Patent Application
20100303849
Dengue virus is a member of the Flaviviridae virus family, which includes four serotypes, DEN-1, DEN-2, DEN-3, and DEN-4. Infection of dengue virus leads to dengue fever, which is characterized by sudden onset of severe headache, muscle and joint pains, fever, and rash. A number of dengue epidemics occurred during the past. According to the World Health Organization, there are an estimated 50 million cases of dengue fever with 500,000 cases of dengue hemorrhagic fever requiring hospitalization each year. Vaccination is considered to be the most effective and efficient approach to prevent Dengue virus infection. However, despite decades of research, a safe and effective dengue vaccine is still not available. There is a need for such a safe and effective dengue vaccine.
This invention relates to immunogenic compositions, such as vaccines, against Dengue virus infection.
One aspect of the invention features an immunogenic composition having a recombinant fusion protein that has a first segment having a lipidating sequence and a second segment having the sequence of a Dengue viral protein fragment. The fusion protein or the dengue viral protein fragment, once administered to a subject, can induce antibodies against dengue virus, e.g., cross-neutralizing antibodies against four serotypes of dengue virus. In one embodiment, the lipidating sequence includes at least 40 residues from the N-terminus of an Ag473 protein (shown below). The immunogenic composition optionally further contains a pharmaceutically acceptable adjuvant.
The Dengue viral protein fragment can be any immunogenic or antigenic protein fragment from a Dengue virus. In a preferred embodiment, the Dengue viral protein fragment includes the sequence of consensus envelope protein domain III (cED III). The amino acid and related nucleic acid coding sequences of this cED III (SEQ ID NOs: 6 and 7, respectively) are listed below:
Another aspect of this invention features an isolated fusion protein that includes a first segment having a lipidating sequence and a second segment having the sequence of a dengue viral protein fragment. The first segment can be located at the N-terminus to the second segment of the fusion protein. In one embodiment, the fusion protein is lipidated. The lipidating sequence can include at least 40 residues from the N-terminus of Ag473 (e.g., SEQ ID NOs: 20-22 shown below). In one embodiment, the Dengue viral protein fragment includes the sequence of envelope protein domain III (SEQ ID NO: 6) or the corresponding sequence of DEN-1, DEN-2, DEN-3, and DEN-4.
An isolated protein or polypeptide refers to a protein or polypeptide substantially free from naturally associated molecules, i.e., it is at least 75% (i.e., any number between 75% and 100%, inclusive) pure by dry weight. Purity can be measured by any appropriate standard method, e.g., by column chromatography, polyacrylamide gel electrophoresis, or HPLC analysis. An isolated polypeptide or protein can be purified from a natural source, produced by recombinant DNA techniques, or by chemical methods.
The invention also features an isolated nucleic acid that contains a sequence encoding the above-described fusion protein. A nucleic acid refers to a DNA molecule (e.g., a cDNA or genomic DNA), an RNA molecule (e.g., an mRNA), or a DNA or RNA analog. A DNA or RNA analog can be synthesized from nucleotide analogs. The nucleic acid molecule can be single-stranded or double-stranded, but preferably is double-stranded DNA. An “isolated nucleic acid” is a nucleic acid the structure of which is not identical to that of any naturally occurring nucleic acid or to that of any fragment of a naturally occurring genomic nucleic acid. The term therefore covers, for example, (a) a DNA which has the sequence of part of a naturally occurring genomic DNA molecule but is not flanked by both of the coding sequences that flank that part of the molecule in the genome of the organism in which it naturally occurs; (b) a nucleic acid incorporated into a vector or into the genomic DNA of a prokaryote or eukaryote in a manner such that the resulting molecule is not identical to any naturally occurring vector or genomic DNA; (c) a separate molecule such as a cDNA, a genomic fragment, a fragment produced by polymerase chain reaction (PCR), or a restriction fragment; and (d) a recombinant nucleotide sequence that is part of a hybrid gene, i.e., a gene encoding a fusion protein. The nucleic acid described above can be used to express the polypeptide or protein of this invention. For this purpose, one can operatively link the nucleic acid to suitable regulatory sequences to generate an expression vector.
A vector refers to a nucleic acid molecule capable of transporting another nucleic acid to which it has been linked. The vector can be capable of autonomous replication or integrate into a host DNA. Examples of the vector include a plasmid, cosmid, or viral vector. The vector of this invention includes a nucleic acid in a form suitable for expression of the nucleic acid in a host cell. Preferably the vector includes one or more regulatory sequences operatively linked to the nucleic acid sequence to be expressed. A “regulatory sequence” includes promoters, enhancers, and other expression control elements (e.g., T7 promoter, cauliflower mosaic virus 35S promoter sequences or polyadenylation signals). Regulatory sequences include those that direct constitutive expression of a nucleotide sequence, as well as tissue-specific regulatory and/or inducible sequences. The design of the expression vector can depend on such factors as the choice of the host cell to be transformed, the level of expression of protein desired, and the like. The expression vector can be introduced into host cells to produce the polypeptide/protein of this invention.
Also within the scope of this invention is a host cell that contains the above-described nucleic acid. Examples include E. coli cells, insect cells (e.g., using baculovirus expression vectors), plant cells, yeast cells, or mammalian cells. See e.g., Goeddel, (1990) Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Calif.
To produce a fusion protein/polypeptide of this invention, one can culture a host cell in a medium under conditions permitting expression of the fusion protein/polypeptide encoded by a nucleic acid of this invention, and purify the fusion protein/polypeptide from the cultured cell or the medium of the cell. Alternatively, the nucleic acid of this invention can be transcribed and translated in vitro, for example, using T7 promoter regulatory sequences and T7 polymerase in cell lysate from, e.g., E. coli. The lipidated fusion protein can include, from N-terminus to C-terminus, D1 fragment of Ag473 and dengue envelope protein domain III.
In another aspect, the invention features a method of inducing an immune response to dengue virus infection. The method includes the step of administering to a subject in need thereof an effective amount of the above-described immunogenic composition. The immunogenic composition can be formulated or not formulated with an adjuvant.
The details of one or more embodiments of the invention are set forth in the accompanying drawings and the description below. Other features, objects, and advantages of the invention will be apparent from the description and drawings, and from the claims.
This invention is based, at least in part, on the unexpected discoveries that a lipidating sequence of Ag473 led to lipidatation of a fusion protein having the lipidating sequence and a Dengue virus protein, and that the lipidated a fusion protein was much more immunogenic than the Dengue virus protein with no lipidation.
Accordingly, the present invention features an immunogenic composition, such as vaccines, against Dengue virus infection. As mentioned above, the immunogenic compositions contain a recombinant fusion protein. The fusion protein has a first segment having a lipidating sequence and a second segment having the sequence of a dengue viral protein fragment. The dengue viral protein fragment can induce, in a subject, antibodies against dengue virus, such as cross-neutralizing antibodies against four serotypes of dengue virus.
An “antibody” refers to an immunoglobulin molecule or at least one immunologically active portion of an immunoglobulin molecule that has a specific amino acid sequence and binds only to an antigen or a group of antigens that are closely related. Examples of “antibodies” include IgG, IgM, IgA, IgD and IgE. Examples of immunologically active portions of immunoglobulin molecules include Fab and F(ab)′.sub.2 fragments which can be generated by treating the antibody with an enzyme such as pepsin. An “antibody” can be a monoclonal antibody or a polyclonal antibody. The term “monoclonal antibody” refers to a population of antibody molecules that contains only one species of an antigen binding site and that is capable of immunoreacting with a particular epitope. The term “polyclonal antibody” refers to a population of antibody molecules that contains more than one species of antigen binding sites and that is capable of immunoreacting with more than one epitope on the polypeptide.
A “subject” refers to a human and a non-human animal. Examples of a non-human animal include all vertebrates, e.g., mammals, such as non-human primates (particularly higher primates), dog, rodent (e.g., mouse or rat), guinea pig, cat, and non-mammals, such as birds, amphibians, etc. In a preferred embodiment, the subject is a human. In another embodiment, the subject is an experimental animal or animal suitable as a disease model.
The Dengue viral protein fragment can be any immunogenic or antigenic protein fragment from a Dengue virus. In one embodiment, the dengue viral protein is fragment of a Dengue envelope protein. The Dengue envelope protein includes three domains (I, II, and III). It is believed that domain III (E3) plays an important role in receptor recognition. In the previous U.S. patent application Ser. No. 12/156,908, the content of which is incorporated herein by reference in its entirety, a consensus envelope protein domain III (cED III) was developed as a vaccine candidate. It was found that cED III was able to induce neutralizing antibody against four serotype of dengue virus (Leng, C H, et al., Mcrobe and Infection 11 (2009) 288-295). A “consensus sequence” refers to an amino acid or nucleic acid sequence that is determined by aligning a series of multiple sequences and that defines an idealized sequence that represents the predominant choice of amino acid or base at each corresponding position of the multiple sequences. Depending on the sequences of the series of multiple sequences, the consensus sequence for the series can differ from each of the sequences by zero, one, a few, or more substitutions. Also, depending on the sequences of the series of multiple sequences, more than one consensus sequence may be determined for the series. Various software programs known in the art can be used to determine a consensus sequence.
The present invention discloses a fusion protein of one of the above-mentioned cED I, II, or III with the N-terminal portion of Ag473 for the production of a recombinant lipo-cED I, II, or III in high yield in an E. coli expression system. It was unexpected that the recombinant fusion protein alone (i.e., in the absence of any adjuvant) can induce cross-neutralization antibody responses against four serotypes of dengue virus.
The above-mentioned Ag473 is a Neisseria Mengitidis lipoprotein consisting of four domains, SP and Domains 1-3. See
SP: amino acid residues 1-17 in SEQ ID NO:1 (underlined, SEQ ID NO: 8)
Domain 1: amino acid residues 18-40 in SEQ ID NO:1 (highlited, SEQ ID NO: 9)
Domain 2: amino acid residues 41-71 in SEQ ID NO:1 (bold face, SEQ ID NO: 10)
Domain 3: amino acid residues 72-121 in SEQ ID NO:1 (italic, SEQ ID NO: 11)
Listed below are the amino acid and nucleic acid of fusion proteins of E3 from Dengue-1, Dengue-2, Dengue-3, and Dengue-4 viruses (SEQ ID NOs: 12-19). The SP-Domain 1 sequence (D1 fragment, aa 1-40) and E3 sequence (aa 43-145; SEQ ID NOs: 23-26) in each fusion protein are underlined.
Met Lys Lys Leu Leu Ile Ala Ala Met Met Ala Ala
Ala Leu Ala Ala Cys Ser Gln Glu Ala Lys Gln Glu
Val Lys Glu Ala Val Gln Ala Val Glu Ser Asp Val
Lys Asp Thr Ala Gly Ser Lys Gly Met Ser Tyr Val
Met Cys Thr Gly Ser Phe Lys Leu Gln Lys Glu Val
Ala Glu Thr Gln His Gly Thr Val Leu Val Gln Val
Lys Tyr Glu Gly Thr Asp Ala Pro Cys Lys Ile Pro
Phe Ser Ser Gln Asp Glu Lys Gly Val Thr Gln Asn
Gly Arg Leu Ile Thr Ala Asn Pro Ile Val Thr Asp
Lys Glu Lys Pro Val Asn Ile Glu Ala Glu Pro Pro
Phe Gly Glu Ser Tyr Ile Val Val Gly Ala Gly Glu
Lys Ala Leu Lys Leu Ser Trp Phe Lys Lys Gly Ser Ser
Met Lys Lys Leu Leu Ile Ala Ala Met Met Ala Ala
Ala Leu Ala Ala Cys Ser Gln Glu Ala Lys Gln Glu
Val Lys Glu Ala Val Gln Ala Val Glu Ser Asp Val
Lys Asp Thr Ala Gly Ser Lys Gly Met Ser Tyr Ser
Met Cys Thr Gly Lys Phe Lys Val Val Lys Glu Ile
Ala Glu Thr Gln His Gly Thr Ile Val Ile Arg Val
Gln Tyr Glu Gly Asp Gly Ser Pro Cys Lys Ile Pro
Phe Glu Ile Met Asp Leu Glu Lys Arg His Val Leu
Gly Arg Leu Ile Thr Val Asn Pro Ile Val Thr Glu
Lys Asp Ser Pro Val Asn Ile Glu Ala Glu Pro Pro
Phe Gly Asp Ser Tyr Ile Ile Ile Gly Val Glu Pro
Gly Gln Leu Lys Leu Asn Trp Phe Lys Lys Gly Ser
Ser
Met Lys Lys Leu Leu Ile Ala Ala Met Met Ala Ala
Ala Leu Ala Ala Cys Ser Gln Glu Ala Lys Gln Glu
Val Lys Glu Ala Val Gln Ala Val Glu Ser Asp Val
Lys Asp Thr Ala Gly Ser Lys Gly Met Ser Tyr Ala
Met Cys Leu Asn Thr Phe Val Leu Lys Lys Glu Val
Ser Glu Thr Gln His Gly Thr Ile Leu Ile Lys Val
Glu Tyr Lys Gly Glu Asp Ala Pro Cys Lys Ile Pro
Phe Ser Thr Glu Asp Gly Gln Gly Lys Ala His Asn
Gly Arg Leu Ile Thr Ala Asn Pro Val Val Thr Lys
Lys Glu Glu Pro Val Asn Ile Glu Ala Glu Pro Pro
Phe Gly Glu Ser Asn Ile Val Ile Gly Ile Gly Asp
Lys Ala Leu Lys Ile Asn Trp Tyr Lys Lys Gly Ser
Ser
Met Lys Lys Leu Leu Ile Ala Ala Met Met Ala Ala
Ala Leu Ala Ala Cys Ser Gln Glu Ala Lys Gln Glu
Val Lys Glu Ala Val Gln Ala Val Glu Ser Asp Val
Lys Asp Thr Ala Gly Ser Lys Gly Met Ser Tyr Thr
Met Cys Ser Gly Lys Phe Ser Ile Asp Lys Glu Met
Ala Glu Thr Gln His Gly Thr Thr Val Val Lys Val
Lys Tyr Glu Gly Ala Gly Ala Pro Cys Lys Val Pro
Ile Glu Ile Arg Asp Val Asn Lys Glu Lys Val Val
Gly Arg Ile Ile Ser Ser Thr Pro Phe Ala Glu Asn
Thr Asn Ser Val Thr Asn Ile Glu Leu Glu Pro Pro
Phe Gly Asp Ser Tyr Ile Val Ile Gly Val Gly Asp
Ser Ala Leu Thr Leu His Trp Phe Arg Lys Gly Ser
Ser
The term “lipidating sequence” used herein refers to a non-naturally occurring amino acid sequence that (a) includes a first fragment that is at least 80% (85%, 90%, 95%, or 99%) identical to SP of Ag473 and a second fragment at least 80% (85%, 90%, 95%, or 99%) identical to Domain 1 of Ag473, the first fragment being at the N-terminus of the lipidating sequence, and (b) facilitates lipidation in E. coli of a polypeptide or protein carrying the lipidating sequence at its N-terminus. In the lipidating sequence, the first fragment is linked to the second fragment either directly or via a peptide linker. Preferably, this sequence has a length of 40-100 (e.g., 40-80) amino acids. In one example, the lipidating sequence described herein includes SP and Domain 1, i.e., aa 1-40 of SEQ ID NO: 1 (SEQ ID NO: 20). Other examples of the lipidating sequence include any other fragments of SEQ ID NO: 1 that include aa 1-40, e.g., 1-41, 1-45, 1-50, 1-60, 1-80, 1-100, and 1-121 of SEQ ID NO: 1. Examples also include aa 1-41 and aa 1-42 of SEQ ID NO: 12 (SEQ ID NOs: 21 and 22).
As used herein, “percent homology” of two amino acid sequences is determined using the algorithm described in Karlin and Altschul, Proc, Natl. Acad. Sci. USA 87:2264-2268, 1990, modified as described in Karlin and Altschul, Proc, Natl. Acad. Sci. USA 90:5873-5877, 1993. Such an algorithm is incorporated into the NBLAST and XBLAST programs of Altschul et al., J. Mol. Biol. 215:403-410, 1990. BLAST protein searches are performed with the XBLAST program, score=50, wordlength=3, to obtain amino acid sequences homologous to a reference polypeptide. To obtain gapped alignments for comparison purposes, Gapped BLAST is utilized as described in Altschul et al., Nucleic Acids Res. 25:3389-3402, 1997. When utilizing the BLAST and Gapped BLAST programs, the default parameters of the respective programs (e.g., XBLAST and NBLAST) are used. See www.ncbi.nlm.nih.gov.
A fusion protein of the invention can be obtained as a synthetic polypeptide or a recombinant polypeptide. To prepare a recombinant polypeptide, a nucleic acid encoding it can be linked to another nucleic acid encoding a fusion partner, e.g., Glutathione-S-Transferase (GST), 6x-His epitope tag, or M13 Gene 3 protein. The resultant fusion nucleic acid expresses in suitable host cells a fusion protein that can be isolated by methods known in the art. The isolated fusion protein can be further treated, e.g., by enzymatic digestion, to remove the fusion partner and obtain the recombinant polypeptide of this invention.
A heterologous polypeptide, nucleic acid, or gene is one that originates from a foreign species, or, if from the same species, is substantially modified from its original form. Two fused domains or sequences are heterologous to each other if they are not adjacent to each other in a naturally occurring protein or nucleic acid. The term “recombinant” when used with reference, e.g., to a cell, or nucleic acid, protein, or vector, indicates that the cell, nucleic acid, protein or vector, has been modified by the introduction of a heterologous nucleic acid or protein or the alteration of a native nucleic acid or protein, or that the cell is derived from a cell so modified. Thus, for example, recombinant cells express genes that are not found within the native (naturally occurring) form of the cell or express a second copy of a native gene that is otherwise normally or abnormally expressed, under expressed or not expressed at all.
In one embodiment of the present invention, the lipidating sequence mentioned above is linked to dengue cED III to form a fusion protein, which is in lipidated form when expressed in E. coli by conventional recombinant technology. An example follows. A DNA fragment encoding the lipidating sequence and a DNA fragment encoding the dengue cED III are inserted into an expression vector, preferably carrying a strong promoter (e.g., T7, T5, T3, or SP6), to construct an expression plasmid. The strong promoter can be inducible, e.g., by isopropyl β-D-thiogalactoside (IPTG). The expression plasmid is then introduced into an E. coli host strain and positive transformants are cultured under suitable conditions for protein expression. It is preferred that the E. coli host strain be resistant to the toxic effects induced by over-expression of exogenous proteins. Such E. coli strains can be identified/generated by the methods described in U.S. Pat. No. 6,361,966. Examples of these E. coli strains include, but are not limited to, C43(DE3) (ECCC B96070445), C41(DE3) (ECCC B96070444), C0214(DE3), DK8(DE3)S(NCIMB 40885), and C2014(DE3) (NCIMB 40884).
Preferably, the fusion protein thus expressed is isolated from the E. coli host cells and its lipidation status is confirmed via methods known in the art, e.g., immunoblotting with an anti-lipoprotein antibody or mass spectrometry.
A fusion protein of this invention can also be used to prepare an immunogenic composition (e.g., a vaccine) for generating antibodies against Dengue virus in a subject (e.g., a human subject) susceptible to the virus. Such compositions can be prepared, e.g., in the manners described below, or by any other equivalent methods known in the art.
This lipidated fusion protein can be mixed with a pharmaceutically acceptable carrier such as a phosphate buffered saline, a bicarbonate solution, or an adjuvant to produce a pharmaceutical composition. The carrier must be “acceptable” in the sense that it is compatible with the active ingredient of the composition, and preferably, capable of stabilizing the active ingredient and not deleterious to the subject to be treated. The carrier is selected on the basis of the mode and route of administration, and standard pharmaceutical practice. Suitable pharmaceutical carriers and diluents, as well as pharmaceutical necessities for their use, are described in Remington's Pharmaceutical Sciences. In one example, the fusion protein is mixed with an adjuvant to form a composition useful for immune modulation. This composition may be prepared as injectables, as liquid solutions or emulsions. See U.S. Pat. Nos. 4,601,903; 4,599,231; 4,599,230; and 4,596,792.
An “adjuvant” refers to a substance added to an immunogenic composition, such as a vaccine, that while not having any specific antigenic effect in itself, can stimulate the immune system and increase the immune response to the immunogenic composition. Examples of adjuvants include, but are not limited to, alum-precipitate, Freund's complete adjuvant, Freund's incomplete adjuvant, monophosphoryl-lipid A/trehalose dicorynomycolate adjuvant, water in oil emulsion containing Corynebacterium parvum and tRNA, and other substances that accomplish the task of increasing immune response by mimicking specific sets of evolutionarily conserved molecules including liposomes, lipopolysaccharide (LPS), molecular cages for antigen, components of bacterial cell walls, and endocytosed nucleic acids such as double-stranded RNA, single-stranded DNA, and unmethylated CpG dinucleotide-containing DNA. Other examples include cholera toxin, E. coli heat-labile enterotoxin, liposome, immune-stimulating complex (ISCOM), immunostimulatory sequences oligodeoxynucleotide, and aluminum hydroxide. The composition can also include a polymer that facilitates in vivo delivery.
See Audran R. et al. Vaccine 21:1250-5, 2003; and Denis-Mize et al. Cell Immunol., 225:12-20, 2003. Alternatively, the lipo-cED III fusion protein of the invention can be used in a dengue vaccine without any adjuvant.
An effective amount of the pharmaceutical composition described above may be administered parenterally, e.g., subcutaneous injection or intramuscular injection. Alternatively, other modes of administration including suppositories and oral formulations may be desirable. For suppositories, binders and carriers may include, for example, polyalkalene glycols or triglycerides. Oral formulations may include normally employed incipients such as pharmaceutical grades of saccharine, cellulose, magnesium carbonate and the like. These compositions take the form of solutions, suspensions, tablets, pills, capsules, sustained release formulations or powders. An “effective amount” means that amount of a composition that elicits a biological or medicinal response in a tissue system of a subject, or in a subject, that is being sought by a researcher, veterinarian, medical doctor or other clinician.
The above-described fusion protein can be used in an immunogenic composition, e.g., a vaccine for generating antibodies and immune response against Dengue virus in a subject susceptible to the virus. A vaccine can be administered in a manner compatible with the dosage formulation, and in an amount that is therapeutically effective, protective and immunogenic. The quantity to be administered depends on the subject to be treated, including, for example, the capacity of the individual's immune system to synthesize antibodies, and if needed, to produce a cell-mediated immune response. Precise amounts of active ingredient required to be administered depend on the judgment of the practitioner. However, suitable dosage ranges are readily determinable by one skilled in the art and may be of the order of micrograms of the polypeptide of this invention. Suitable regimes for initial administration and booster doses are also variable, but may include an initial administration followed by subsequent administrations. The dosage of the vaccine may also depend on the route of administration and varies according to the size of the host.
As described in the examples below, the above-described fusion protein or composition can be used to induce immune response in a subject against Dengue virus infection. The term “immune response” or “immunogenic response” refers to any reaction of the immune system in response to an antigen in a subject. Examples of an immune response in a vertebrate include, but are not limited to, antibody production, induction of cell-mediated immunity, complement activation, and development of immune tolerance. The immune response to a subsequent stimulus by the same antigen, also named the secondary immune response, is more rapid than in the case of the primary immune response.
An “antigen” refers to a molecule containing one or more epitopes that will stimulate a host's immune system to make a humoral and/or cellular antigen-specific response. The term “antigen” is used interchangeably with “immunogen.” As a result of coming in contact with appropriate cells, an “antigen” induces a state of sensitivity or immune responsiveness and reacts in a demonstrable way with antibodies or immune cells of the sensitized subject in vivo or in vitro. An “antigen” can be specifically recognized and bound by antibodies in an organism. An antigen in association with a major histocompatibility complex (MHC) can also be recognized and bound by receptors on the surface of T lymphocytes (T-cells), leading to the activation of the T-cells. The term “epitope” as used herein refers to the site on an antigen to which a specific antibody molecule or a T-cell receptor binds. The term “epitope” is used herein interchangeably with “antigenic determinant” or “antigenic determinant site.”
A subject susceptible to Dengue virus infection can be identified by methods known in the art and administered a composition of the invention. The dose of the composition depends, for example, on the particular polypeptide/protein, whether an adjuvant is co-administered, and the type of adjuvant co-administered, the mode and frequency of administration, as can be determined by one skilled in the art. Administration is repeated as necessary, as can be determined by one skilled in the art. For example, a priming dose can be followed by three booster doses at weekly intervals. A booster shot can be given at 4 to 8 weeks after the first immunization, and a second booster can be given at 8 to 12 weeks, using the same formulation. Sera or T-cells can be taken from the subject for testing the immune response elicited by the composition against the Dengue virus. Methods of assaying antibodies or cytotoxic T cells against a protein or infection are well known in the art. Additional boosters can be given as needed. By varying the amount of polypeptide/protein, the dose of the composition, and frequency of administration, the immunization protocol can be optimized for eliciting a maximal immune response. Before a large scale administering, efficacy testing is desirable. In an efficacy testing, a non-human subject (e.g., mouse, rat, rabbit, house, pig, cow, or monkey) can be administered via an oral or parenteral route with a composition of the invention. After the initial administration or after optional booster administration, both the test subject and the control subject (receiving mock administration) can be challenged with Dengue virus to test the efficacy of the composition.
This invention also features an isolated antibody, polyclonal or monoclonal, that selectively binds to a peptide comprising a sequence selected from the group consisting of SEQ ID NOs: 6 and 23-26. To produce this antibody of claim 20, one can use standard antibody generating techniques, including immunizing an animal with the above-described fusion protein, which elicits an immune response in the animal to produce the antibody; and isolating the antibody or a cell producing the antibody from the animal
The specific examples below are to be construed as merely illustrative, and not limitative of the remainder of the disclosure in any way whatsoever. Without further elaboration, it is believed that one skilled in the art can, based on the description herein, utilize the present invention to its fullest extent. All publications cited herein are hereby incorporated by reference in their entirety. Further, any mechanism proposed below does not in any way restrict the scope of the claimed invention.
The cED III gene was obtained using an assembly PCR method with overlapping primers. The product of the assembly PCR was then amplified by conventional PCR. The forward primer for this step (5′-ACATATGAAAGGCATGAGCTATGCG-3′, SEQ ID NO: 2) included an Nde I site, and the reverse primer (5′-ACTCGAGGCTGCTGCCTTTTTTA-3′, SEQ ID NO: 3), included an Xho I site. The PCR product was cloned into the expression vector pET-22b(+) (NOVAGEN, Madison, Wis.), using Nde I and Xho I sites to produce a pDconE3 plasmid. As a result, the C-terminal end of the recombinant protein contains an additional hexahistidine tag (HisTag).
The Ag473 fragments D1 shown in
Met Lys Lys Leu Leu Ile Ala Ala Met Met Ala Ala
Ala Leu Ala Ala Cys Ser Gln Glu Ala Lys Gln Glu
Val Lys Glu Ala Val Gln Ala Val Glu Ser Asp Val
Lys Asp Thr Ala Gly Ser Lys Gly Met Ser Tyr Ala
Met Cys Thr Gly Lys Phe Lys Leu Glu Lys Glu Val
Ala Glu Thr Gln His Gly Thr Ile Leu Ile Lys Val
Lys Tyr Glu Gly Asp Gly Ala Pro Cys Lys Ile Pro
Phe Glu Ile Gln Asp Val Gly Lys Lys His Val Asn
Gly Arg Leu Ile Thr Ala Asn Pro Ile Val Thr Asp
Lys Glu Ser Pro Val Asn Ile Glu Ala Glu Pro Pro
Phe Gly Asp Ser Tyr Ile Val Ile Gly Val Gly Asp
Lys Ala Leu Lys Leu Asn Trp Phe Lys Lys Gly Ser
Ser
The expression plasmids noted above were introduced into E. coli strain C43(DE3) (IMAXIO, Saint-Beauzire, France) via conventional recombinant technology and positive transformants were selected. The transformants were cultured at 37° C. overnight and then induced with 1 mM of IPTG for 3 hours. The E. coli cells were harvested afterwards by centrifugation and lyzed. The cell lysates were first analyzed by SDS-PAGE to determine presence of the fusion protein, i.e., lipo-cED III expressed from the expression plasmid.
Recombinant cED III, expressed from pDconE3, and fusion protein lipo-cED III, expressed from pD1E3, were isolated from C43(DE3) cells by immobilized metal affinity chromatography (IMAC) as follows. E. coli cells were harvested from 2.4 liter cell cultures by centrifugation (8000×g for 20 min) and the pellets thus collected were re-suspended in 100 ml of a homogenization buffer containing 20 mM Tris-Cl (pH 8.0), 500 mM NaCl, 10% glycerol, 50 mM sucrose, and 10 mM imidazole). The E. coli cells were then disrupted using a French Press (CONSTANT SYSTEMS, Daventry, UK) at 27 Kpsi in the presence of a detergent and the cell lysates thus obtained were centrifuged at 80,000×g for 60 min. The supernatants were collected and loaded onto a column (2.2 cm i.d.×5.3 cm) filled with 20 ml Ni—NTA resin (QIAGEN, San Diego, Calif., USA). The column was washed first with the homogenization buffer and then with the same buffer containing 50 mM imidazole. The recombinant proteins were eluted with the homogenization buffer containing 500 mM imidazole and characterized by both SDS-PAGE and immunoblotting. The result thus obtained (which is showed in
Fusion protein lipo-cED III was then subjected to mass spectrometry (MS) analysis as described below. The protein was first dialyzed against 5 mM ammonium bicarbonate at pH 8.5 and then treated with trypsin (PROMEGA Co., Madison, Wis.) at a lipo-cED III: trypsin ratio of 50:1 (Wt/Wt) in 25 mM ammonium bicarbonate (pH 8.5) for 2 hours at room temperature. The enzymatic reaction was terminated by addition of formic acid (final concentration 1.2%). One microliter of the typsini-digested protein was mixed with 1 μl of a saturated solution of α-ciano-4-hydrozycinnamic acid (SIGMA) in acetonitrile/0.1% trifluoroacetic acid (1:3, vol/vol). One microliter of the mixture was placed on the target plate of a matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometer (BURKER) for analysis. The MS peaks obtained from this analysis represent the peptides obtained from complete trpsin-digestion of lipo-cED III. These peptides correspond to the C-terminal fragments of the fusion protein. The MS results also indicate that these peptides are not modified.
The fusion protein was then subjected to partial trypsin digestion (10 minutes digestion). Results obtained from MALDI-TOF analysis as described above indicate that the partial trypsin digestion products correspond to the N-terminal fragments of lipo-cED III and these peptides are lipidated. Take together, it is demonstrated that fusion protein lipo-cED III is a lipoprotein.
To evaluate the immunogenic property of rlipo-cED III in vivo, assays were carried out to analyze the magnitude of cED III-specific antibody responses in mice immunized with either recombinant cED III or recombinant lipo-cED III.
Groups of 8-12-week old BALB/c mice (n=5) were initially immunized subcutaneously with 20 μg (1.5 nmol) of recombinant lipo-cED III, or 20 μg (1.6 nmol) of recombinant cED III formulated in PBS. The antigen of the same formulation and amount was administered subcutaneously to boost the immune response in each mouse on day 14 after priming. Immune sera were collected by tail vein bleeding 2 weeks after the booster immunization. Anti-cED III antibody titers were determined by ELISA. Briefly, microtiter plates were coated with cED III and incubated with the sera of various dilutions. Bound IgG was detected with horseradish peroxidase-conjugated goat anti-mouse IgG Fc. Color was developed by adding 3,3,5,5-tetramethylbenzidine and the absorbance at 450 nm was measured in an ELISA reader. End-point titers were defined as the serum dilution that resulted in an absorbance value>0.2.
As shown in
To evaluate the ability of recombinant cED III and recombinant lipo-cED III to induce cross-neutralizing antibodies against four serotypes of dengue virus, a foci reduction neutralization assay was performed to test increasing dilutions of pooled individual immune sera from mice of each group.
BALB/c mice (n=5) were immunized subcutaneously with 20 μg/mouse of cED III or lipo-cED III three times at two-week intervals. Sera were collected 14 days after the last immunization. The sera from each group were then pooled to evaluate neutralization of the infectivity of dengue virus by Focus Reduction Neutralization Test (FRNT). The neutralizing antibody titer was calculated as the reciprocal of the highest dilution that resulted in a 40% reduction of Focus-Forming Unit (FFU) compared to that of a control of virus with pre-immunization sera. The neutralizing antibody titers were summarized in Table 1 below.
As showed in Table 1, recombinant cED III elicited the lowest neutralizing antibody titer (<8). In contrast, recombinant lipo-cED III, in the absence of adjuvant, generated a cross-neutralizing effect (from 8 to 16). These results demonstrate that the cED III is able to elicit antibodies to inhibit the four serotypes of dengue viral infections when it is lipidated with the aid of a lipidating sequence derived from Ag473.
In the present invention, it is unambiguously demonstrated that fusion of a lipidated domain to dengue cED III can dramatically enhance the immunogenicity of dengue cED III and that the lipidated cED III (lipo-cED III) is much more immunogenic than its non-lipidated counterpart. Furthermore, the observation that recombinant lipo-cED III induced significantly higher neutralizing antibody titers against dengue virus than non-lipidated recombinant cED III counterpart not only indicates that the lipid moiety confers immunopotentiating activity to the fusion protein but also that the additional bacterial sequence did not alter the functional epitope structure of the viral immunogen. Therefore, the present invention provides a new approach for a large-scale production of dengue cED III lipoprotein and lipo-immunogen with intrinsic adjuvant properties for the design of a new generation of dengue virus vaccines.
To evaluate the ability of recombinant Den-1 ED III and recombinant lipo-Den-1
ED III (SEQ ID NO: 12) to induce neutralizing antibodies against dengue-1 virus, we tested increasing dilutions of pooled individual immune sera from mice using the foci reduction neutralization assay described above.
Briefly, BALB/c mice (n=5) were immunized subcutaneously with 10 μg of Den-1 ED III or lipo-Den-1 ED III three times at two-week intervals. Sera were collected 14 days after the last immunization. The sera in each group were pooled to evaluate neutralization of the infectivity of dengue virus by FRNT. The neutralizing antibody titer was calculated as the reciprocal of the highest dilution that resulted in a 40% reduction of FFU compared to that of a control of virus with pre-immunization sera. Values are the means of triplicate wells. The results were summarized in Table 2.
To evaluate the ability of recombinant Den-2 ED III and recombinant lipo-Den-2 ED III (SEQ ID NO: 14)to induce neutralizing antibodies against dengue-2 virus, we tested increasing dilutions of pooled individual immune sera from mice of each group in the foci reduction neutralization assay. BALB/c mice (n=5) were immunized subcutaneously with 10 μg of Den-2 ED III or lipo-Den-2 ED III three times at two-week intervals. Sera were collected 14 days after the last immunization. Sera were pooled in each group to evaluate neutralization of the infectivity of dengue virus by FRNT. The neutralizing antibody titer was calculated as the reciprocal of the highest dilution that resulted in a 40% reduction of FFU compared to that of a control of virus with pre-immunization sera. Values are the means of triplicate wells. The results were summarized in Table 3.
To evaluate the ability of recombinant Den-3 ED III and recombinant lipo-Den-3
ED III (SEQ ID NO: 16) to induce neutralizing antibodies against dengue-3 virus, we tested increasing dilutions of pooled individual immune sera from mice of each group in the foci reduction neutralization assay. BALB/c mice (n=5) were immunized subcutaneously with 10 μg of Den-4 ED III or lipo-Den-4 ED III three times at two-week intervals. Sera were collected 14 days after the last immunization. Sera were pooled in each group to evaluate neutralization of the infectivity of dengue virus by FRNT. The neutralizing antibody titer was calculated as the reciprocal of the highest dilution that resulted in a 40% reduction of FFU compared to that of a control of virus with pre-immunization sera. Values are the means of triplicate wells. The results were summarized in Table 4.
To evaluate the ability of recombinant Den-4 ED III and recombinant lipo-Den-4 ED III (SEQ ID NO: 18) to induce neutralizing antibodies against dengue-4 virus, we tested increasing dilutions of pooled individual immune sera from mice of each group in the foci reduction neutralization assay. BALB/c mice (n=5) were immunized subcutaneously with 10 μg of Den-4 ED III or lipo-Den-4 ED III three times at two-week intervals. Sera were collected 14 days after the last immunization. Sera were pooled in each group to evaluate neutralization of the infectivity of dengue virus by FRNT. The neutralizing antibody titer was calculated as the reciprocal of the highest dilution that resulted in a 40% reduction of FFU compared to that of a control of virus with pre-immunization sera. Values are the means of triplicate wells. The results were summarized in Table 5.
All of the features disclosed in this specification may be combined in any combination. Each feature disclosed in this specification may be replaced by an alternative feature serving the same, equivalent, or similar purpose. Thus, unless expressly stated otherwise, each feature disclosed is only an example of a generic series of equivalent or similar features.
A number of embodiments of the invention have been described. Nevertheless, it will be understood that various modifications may be made without departing from the spirit and scope of the invention. Accordingly, other embodiments are within the scope of the following claims.
This application claims priority of U.S. Provisional Application No. 61/183,277, filed on Jun. 2, 2009. The prior application is incorporated herein by reference in its entirety.
| Number | Date | Country | |
|---|---|---|---|
| 61183277 | Jun 2009 | US |
