METHOD FOR SELECTING A CANCER THERAPY

Information

  • Patent Application
  • 20130005747
  • Publication Number
    20130005747
  • Date Filed
    December 21, 2011
    12 years ago
  • Date Published
    January 03, 2013
    11 years ago
Abstract
The present invention provides a method for determining whether or not a cancer subject is suitable for treatment with a purine-based roscovitine-like inhibitor, which method comprises the step of determining the ras status of the cancer, wherein a determination that the subject has mutant ras status is indicative that the subject is suitable for treatment with a purine-based roscovitine-like inhibitor.
Description
FIELD OF THE INVENTION

The present invention relates to a method for determining which cancer subject is suitable for treatment with a particular class of inhibitors, to a method for selecting a therapy for a cancer subject and to a method of treatment using such therapy.


BACKGROUND TO THE INVENTION

Roscovitine is a cyclin dependent kinase (CDK) inhibitor which selectively inhibits multiple enzyme targets, such as CDK2/E, CDK2/A, CDK7 and CDK9, that are central to the process of cell division and cell cycle control. Preclinical studies have shown that roscovitine works by inducing cell apoptosis, or cell suicide, in multiple phases of the cell cycle.


Roscovitine has been shown to have anti-tumor activity against many human cancer cell lines, including those of breast, prostate, colorectal, pancreatic and lung cancer origins (Fleming et al (2008) Clin. Cancer Res. 14:4326-35).


Roscovitine has also been evaluated in several Phase I and II studies (in approximately 400 patients) and has shown early signs of anti-cancer activity. Studies include a Phase I study in which single agent roscovitine was administered to patients with advanced cancer including NSCLC and two Phase IIa studies in which roscovitine was administered in combination with gemcitabine and cisplatin as first-line treatment and with docetaxel as second-line treatment in NSCLC. Roscovitine has also been evaluated in a Phase I study in patients with nasopharyngeal cancer (NPC) with evidence of tumor shrinkage and concomitant reduction in copy counts of the EBV virus that is causally associated with the pathogenesis of NPC.


Roscovitine is currently being evaluated in the APPRAISE trial, a Phase 2b randomized double-blinded study to evaluate the efficacy and safety of the drug as a third line or later treatment in patients with NSCLC. The trial is using a randomized discontinuation trial design. Roscovitine is also being evaluated in a Phase 2 study as a single agent in patients with nasopharyngeal cancer.


Although roscovitine and purine-based roscovitine-like inhibitors have been shown to be effective against a range of cancers, efficacy varies between cancer types and between individual cancer-patients.


It is desirable, therefore, for an improved method to predict the likely efficacy for this type of treatment for a given cancer patient prior to commencing treatment.





DESCRIPTION OF THE FIGURES

FIG. 1—Chemical structure of R-roscovitine (also known as CYC202 and as seliciclib)


FIG. 2—Chemical structures of Compounds A, B, C and D


FIG. 3—Chemical structure for Bohemine


FIG. 4—Chemical structure for Olomoucine


FIG. 5—Profiling for roscovitine sensitivity revealed growth inhibitory effects in diverse cancer lines. (A) Schematic representation of roscovitine sensitivity across 270 cancer cell lines from diverse tissues. Lung (others), four small-cell lung cancer, six mesothelioma, and one bronchial carcinoma cell lines. Miscellaneous, two fibrosarcoma, one fibrous histiocytoma, and one small round-cell sarcoma cancer cell lines. The complete set of data is presented in Table 1. (B) Pie chart representation of NSCLC cell lines sensitivity to roscovitine treatment. (C) Left, ras status for the 15 NSCLC cell lines with highest growth inhibitor response to roscovitine. Right, ras status for the 15 NSCLC cell lines with least growth inhibitory response to roscovitine.


FIG. 6—Effects of seliciclib treatment on human and murine lung cancer cell lines versus murine immortalized pulmonary epithelial cells and cooperation with taxanes. A) Seliciclib treatment independently caused dose-dependent growth inhibition of H-23 (left panel), HOP-62 (center panel) and H-522 (right panel) human lung cancer cell lines at 72 hours post-treatments. B) Dose-dependent growth inhibition of C-10 murine immortalized pulmonary epithelial cells following seliciclib treatment or vehicle treatment. C) Combined treatment of seliciclib with paclitaxel or docetaxel cooperatively inhibited proliferation of these human lung cancer cell lines.





SUMMARY OF THE INVENTION

The present inventors have surprisingly found that, within cancer cell types, there is a tight correlation between ras status and the sensitivity of the cell to treatment with purine-based roscovitine-like inhibitors. Activating ras mutations are associated with increased sensitivity to this type of treatment.


This finding is particularly surprising given that, in general, patients that express a mutant ras protein appear to be less responsive than their wild type equivalents to a wide range of chemotherapies including both traditional cytotoxics (e.g. irinotecan) and more novel targeted agents (e.g. EGFR inhibitors and mTOR inhibitors).


The finding enables predictions to be made about how likely a given cancer patient is to respond to and benefit from treatment with a purine-based roscovitine-like inhibitor.


Thus in a first aspect, the present invention provides a method for determining whether or not a cancer subject is suitable for treatment with a purine-based roscovitine-like inhibitor, which method comprises the step of determining the ras status of the cancer, wherein a determination that the subject has mutant ras status is indicative that the subject is suitable for treatment with a purine-based roscovitine-like inhibitor.


The present inventors also found that there is a tight correlation between the absence of a ras mutation and reduced sensitivity to roscovitine treatment. Hence, in the method of the invention a determination that the subject has wild-type ras status is indicative that the subject is unsuitable for treatment with a purine-based roscovitine-like inhibitor.


In a second aspect, the present invention provides a method for selecting a therapy for treating a cancer subject which comprises the step of determining whether the subject is suitable for treatment with a purine-based roscovitine-like inhibitor using a method according to the first aspect of the invention, and selecting treatment with a purine-based roscovitine-like inhibitor if the subject has mutant ras status.


If, using the method of the second aspect of the invention, the subject is determined to have wild-type ras status, then this is a negative indicator that treatment with a purine-based roscovitine-like inhibitor will be effective. This may form part of a decision to select an alternative type of treatment. However, if there are other positive indicators which would support treatment with a purine-based roscovitine-like inhibitor then the fact that the subject has wild-type ras may not rule out this type of treatment.


The treatment may involve the use of a purine-based roscovitine-like inhibitor in combination with another therapeutic agent.


The treatment may involve the use of a purine-based roscovitine-like inhibitor in combination with a receptor tyrosine kinase (RTK) inhibitor.


The treatment may involve the use of a purine-based roscovitine-like inhibitor in combination with an EGF-R inhibitor.


The treatment may involve the use of a purine-based roscovitine-like inhibitor in combination with an m-TOR inhibitor.


The treatment may involve the use of a purine-based roscovitine-like inhibitor in combination with a PI3-kinase inhibitor.


The treatment may involve the use of a purine-based roscovitine-like inhibitor in combination with a MEK inhibitor


The treatment may involve the use of a purine-based roscovitine-like inhibitor in combination with a prodrug or pharmaceutical preparation in which the active ingredient is a microtubule targeting agent.


The microtubule targeting agent may, for example, be paclitaxel, docetaxel or taxane.


The purine-based roscovitine-like inhibitor may be, for example, roscovitine, Compounds A B, C, D and E, bohemine or olomoucine.


The subject having mutant ras status may express K-ras, H-ras or N-ras mutant protein.


The cancer may be selected from, for example lung, pancreas, colorectal, breast, liver, intestine, oesophagus, uterus, skin, head & neck, nasopharyngeal and haematological cancer, such as Acute Myeloid Leukemia (AML).


In particular, the cancer may be lung or colorectal cancer. The cancer may be non small-cell lung carcinoma (NSCLC).


The cancer may be insensitive to chemotherapy with other agents. For example, the cancer may be insensitive to chemotherapy with cytotoxic agents. The cancer may be insensitive to treatment with targeted agents such as EGFR inhibitors and mTOR inhibitors.


DETAILED DESCRIPTION
I. Purine Based Roscovitine-Like Inhibitor

The purine-based roscovitine-like inhibitor may be a purine substituted at position 2 by an aliphatic amine, and substituted at position 6 by a benzylic amine where the aromatic moiety may be either heteroaryl or aryl, and substituted at position 9 by an aliphatic group. In each case the 2, 6 and 9-position substituents may independently bear optional substituents.


The purine-based roscovitine-like inhibitor may be selected from the group consisting of: roscovitine, Compounds A B, C and D bohemine and olomoucine.


Roscovitine (seliciclib or CYC202) is a 2,6,9-trisubstituted purine analogue. The chemical structure of roscovitine is shown in FIG. 1.


The chemical structures of compounds A, B, C and D are shown in FIG. 2.


Compound A has the chemical name (2R,3S-3-(6-((4,6-dimethylpyridin-3-ylmethylamino)-9-isopropyl-9H-purin-2-ylamino)pentan-2-ol.


Compound B has the chemical name (3R)-3-{9-isopropyl-6-[(pyridin-3-ylmethyl)-amino]-9H-purin-2-ylamino}-2-methyl-pentan-2-ol.


Compound C has the chemical name (3S)-3-{9-isopropyl-6-[(pyridin-3-ylmethyl)-amino]-9H-purin-2-ylamino}-2-methyl-pentan-2-ol.


Compound D has the chemical name (2R,3S)-3-({9-isopropyl-6-[(pyridin-3-yl methyl)amino]-9H-purin-2-yl}amino)pentan-2-ol


Compounds B, C and D are oral multikinase inhibitors with very similar CDK inhibitory profiles to roscovitine.


Bohemine having the chemical name having the chemical name 6-Benzylamino-2-(3-hydroxypropylamino)-9-isopropylpurine has the chemical structure shown in FIG. 3.


Olomoucine, having the chemical name 2-[[9-methyl-6-[(phenylmethyl)amino]-9H-purin-2-yl]amino]-ethanol has the chemical structure shown in FIG. 4.


The purine-based roscovitine-like inhibitor may be a purine of formula (I),




embedded image


wherein:


R2 is NR4R5, where R4 is H or alkyl, and R5 is alkyl, wherein each alkyl group is independently optionally substituted by one or more R1 substituents; preferably, R4 is H and R5 is alkyl optionally substituted by one or more OH groups;


R6 is NHR3, where R3 is aralkyl or alkyl-heteroaryl, each of which is optionally substituted by one or more R1 substituents; preferably, R3 is —CH2-phenyl or —CH2-pyridinyl, wherein the phenyl or pyridinyl is optionally substituted;


R9 is alkyl, cycloalkyl or cycloalkyl-alkyl, each of which is optionally substituted by one or more R1 substituents; preferably R9 is alkyl;


each R1 is independently selected from alkyl, OR7, NR7R8, halogen, CF3, NO2, COR7, CN, COOR7, CONR7R8, SO2R7 and SO2NR7R8, where each R7 and R8 is independently H or alkyl;


or a pharmaceutically acceptable salt or ester thereof.


As used herein, the term “alkyl” includes both saturated straight chain and branched alkyl groups. Preferably, the alkyl group is a C1-20 alkyl group, more preferably a C1-15, more preferably still a C1-12 alkyl group, more preferably still, a C1-6 alkyl group, more preferably a C1-3 alkyl group. Particularly preferred alkyl groups include, for example, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, tert-butyl, pentyl and hexyl.


As used herein, the term “cycloalkyl” refers to a cyclic alkyl group. Preferably, the cycloalkyl group is a C3-12 cycloalkyl group.


As used herein, the term “cycloalkyl-alkyl” refers to a group having both cycloalkyl and alkyl functionalities.


As used herein, the term “aryl” refers to a C6-12 aromatic group which may be substituted (mono- or poly-) or unsubstituted. Typical examples include phenyl and naphthyl etc. Suitable substituents include, for example, one or more R1 groups.


As used herein, the term “heteroaryl” refers to a C2-12 aromatic, substituted (mono- or poly-) or unsubstituted group, which comprises one or more heteroatoms. Preferably, the heteroaryl group is a C4-12 aromatic group comprising one or more heteroatoms selected from N, O and S. Suitable heteroaryl groups include pyrrole, pyrazole, pyrimidine, pyrazine, pyridine, quinoline, thiophene, 1,2,3-triazole, 1,2,4-triazole, thiazole, oxazole, iso-thiazole, iso-oxazole, imidazole, furan and the like. Again, suitable substituents include, for example, one or more R1 groups.


As used herein, the term “aralkyl” includes, but is not limited to, a group having both aryl and alkyl functionalities. By way of example, the term includes groups in which one of the hydrogen atoms of the alkyl group is replaced by an aryl group, e.g. a phenyl group optionally having one or more substituents such as halo, alkyl, alkoxy, hydroxy, and the like. Typical aralkyl groups include benzyl, phenethyl and the like.


As used herein the term “alkyl-heteroaryl” includes, but is not limited to, a group having both heteroaryl and alkyl functionalities as described above.


The invention also encompasses all enantiomers and tautomers of the purine-based roscovitine-like inhibitors. For compounds that posses optical properties (one or more chiral carbon atoms) or tautomeric characteristics, the corresponding enantiomers and/or tautomers may be isolated/prepared by methods known in the art.


II. Determination of Ras Status

The ras genes were first identified as the transforming oncogenes, responsible for the cancer-causing activities of the Harvey (the HRAS oncogene) and Kirsten (KRAS) sarcoma viruses. Subsequent studies identified a third human ras gene, designated NRAS, for its initial identification in human neuroblastoma cells.


The three human ras genes encode highly related 188 to 189 amino acid proteins, designated H-Ras, N-Ras and K-Ras4A and K-Ras4B (the two K-Ras proteins arise from alternative gene splicing).


Mutations in the Ras family of proto-oncogenes (comprising H-Ras, N-Ras and K-Ras) are very common, being found in 20% to 30% of all human tumors.


Ras proteins are GTP-coupled proteins that are important in receptor tyrosine kinase signalling. Mutations in the Ras protein usually cause constitutive activation of Ras GTPase which leads to overactivation of downstream signalling pathways, resulting in cell transformation and tumorigenesis.


Ras status may be determined by a variety of methods known in the art including quantitative PCR (Q-PCR) using mutation specific primers in kits such as the DxS TheraScreen K-RAS Kit or standard PCR-restriction fragment length polymorphism methodology as has been reported previously (Hatzaki et al., Molecular and Cellular Probes 2001; v15, 243) or and direct sequencing using standard techniques of DNA samples isolated from patient tumor biopsies. Any method which gives a high level of accuracy and precision is suitable for use in connection with the method of the invention.


In particular, RAS status may be determined by a method which involves the following steps:


i) Sequence analysis of the H-Ras, K-Ras and/or N-ras genes


ii) Comparison of the sequence with the wild-type H-Ras, K-Ras and/or N-ras genes to determine whether there is an activating ras mutation.


KRAS mutational analysis is commercially available from a number of laboratories such as Clarient Inc or Quintiles.


Two anti-EGFR monoclonal antibody drugs (panitumumab (Vectibix) and cetuximab (Erbitux)) are indicated for treatment of metastatic colorectal cancer. Vectibix specifies that it is are only suitable for treatment of subjects not having KRAS mutations i.e. the patients must be RAS wild type (http://pi.amgen.com/united_states/vectibix/vectibix_pi.pdf).


III. Treatment

The treatment may involve the use of a purine-based roscovitine-like inhibitor in combination with another therapeutic agent.


The two or more agents may be administered in combination, separately or sequentially.


The agent may be a prodrug in which one or more appropriate groups have been modified such that the modification may be reversed upon administration to a human or mammalian subject. Such reversion is usually performed by an enzyme naturally present in such subject, though it is possible for a second agent to be administered together with such a prodrug in order to perform the reversion in vivo. An example of such a modification is an ester, wherein the reversion may be carried out by an esterase.


The purine-like roscovitive inhibitor, other agent or combination may be adapted for oral, rectal, vaginal, parenteral, intramuscular, intraperitoneal, intraarterial, intrathecal, intrabronchial, subcutaneous, intradermal, intravenous, nasal, buccal or sublingual routes of administration.


For oral administration, use may be made of compressed tablets, pills, tablets, gellules, drops, and capsules. The compositions may contain from 1 to 2000 mg, for example, from 50-1000 mg, of active ingredient per dose.


Other forms of administration comprise solutions or emulsions which may be injected intravenously, intraarterially, intrathecally, subcutaneously, intradermally, intraperitoneally or intramuscularly, and which are prepared from sterile or sterilisable solutions. The purine-like roscovitive inhibitor, other agent or combination may also be in form of suppositories, pessaries, suspensions, emulsions, lotions, ointments, creams, gels, sprays, solutions or dusting powders.


An alternative means of transdermal administration is by use of a skin patch. For example, the active ingredient can be incorporated into a cream consisting of an aqueous emulsion of polyethylene glycols or liquid paraffin. The active ingredient can also be incorporated, at a concentration of between 1 and 10% by weight, into an ointment consisting of a white wax or white soft paraffin base together with such stabilisers and preservatives as may be required.


Injectable forms may contain between 10-1000 mg, preferably between 10-500 mg, of active ingredient per dose.


Compositions may be formulated in unit dosage form, i.e., in the form of discrete portions containing a unit dose, or a multiple or sub-unit of a unit dose.


The purine-like roscovitive inhibitor, other agent or combination may be administered intravenously.


A person of ordinary skill in the art can easily determine an appropriate dose of the purine-like roscovitive inhibitor, other agent or combination to administer to a subject without undue experimentation. Typically, a physician will determine the actual dosage which will be most suitable for an individual patient and it will depend on a variety of factors including the activity of the specific compound employed, the metabolic stability and length of action of that compound, the age, body weight, general health, sex, diet, mode and time of administration, rate of excretion, drug combination, the severity of the particular condition, and the individual undergoing therapy. The dosages disclosed herein are exemplary of the average case. There can of course be individual instances where higher or lower dosage ranges are merited, and such are within the scope of this invention.


Depending upon the need, the agent may be administered at a dose of from 0.1 to 30 mg/kg body weight, such as from 0.1 to 10 mg/kg, more preferably from 2 to 20 mg/kg body weight.


Roscovitine is typically administered from about 0.05 to about 5 g/day, preferably from about 0.4 to about 3.2 g/day. Roscovitine is preferably administered orally in tablets or capsules. The total daily dose of roscovitine can be administered as a single dose or divided into separate dosages administered two, three or four times a day.


IV. Subject

The subject may be a mammalian subject, such as human subject.


The present invention provides a method for determining whether a cancer subject is suitable for treatment with a purine-based roscovitine-like inhibitor. A cancer subject is “suitable” if they are likely to respond to treatment with a purine-based roscovitine-like inhibitor or likely to benefit from purine-based roscovitine-like inhibitor. A subject is “likely” to respond/benefit if they have a 20%, 30%, 40%, 50%, 60%, 70%, 80% or 90% chance of responding to treatment.


The subject may be a cancer patient, i.e. a subject having an existing cancerous condition. The subject may, for example, have one of the following cancers: cancer of the breast, ovary, cervix, prostate, testis, oesophagus, stomach, skin, lung, bone, colon, pancreas, thyroid, biliary passages, buccal cavity and pharynx, lip, tongue mouth, small intestine, colon-rectum, large intestine, rectum, brain and central nervous system, glioblastoma, neuroblastoma, keratocanthoma, epidermoid carcinoma, large cell carcinoma, adenocarcinoma, adenoma, follicular cancinoma, undifferentiated carcinoma, papillary carcinoma, seminoma, melanoma, sarcoma, bladder carcinoma, liver carcinoma, kidney carcinoma, myeloid disorders, lymphoid disorders, Hodgkin's disease and leukemia.


In particular, the cancer may be selected from lung, pancreas, colorectal, breast, liver, intestine, oesophagus, uterus, skin, head & neck, nasopharyngeal and haematological malignancies, such as acute myeloid leukemia (AML).


The cancer may be lung or colorectal cancer.


In particular the cancer may be non-small cell lung cancer (NSCLC).


The cancer may be of a type that is insensitive to other drug types, such as EGFR-inhibitors. The term “insensitive” indicates that following treatment, tumor growth has progressed (>20% increase) as defined by the Response Evaluation Criteria in Solid Tumours (RECIST) Committee.


The patient may have relapsed following treatment with another drug type. The term “relapsed” as used herein means that after initial improvement, the symptoms of cancer, such as rate of proliferation of cancer cells, returned. A patient may be considered to have relapsed when after a period of remission or stable disease, following treatment, the tumor has started to grow again (>20% increase above the smallest size since the start of treatment) as defined by the Response Evaluation Criteria in Solid Tumours (RECIST) Committee.


The invention will now be further described by way of Examples, which are meant to serve to assist one of ordinary skill in the art in carrying out the invention and are not intended in any way to limit the scope of the invention.


EXAMPLES
Example 1
Pharmacogenomic Analysis of Cancer Cell Lines

To examine the effects of roscovitine comprehensively, a method for detecting pharmacologic responses was used with a large number of cancer cell lines and a robotic-based platform (McDermott et al (2007) 104:19936-41; McDermott et al (2008) Methods Enzymol. 438:331-41). A total of 270 human cancer cell lines from diverse cancer histopathologic types were investigated. Over half of investigated lung, pancreatic, head and neck, esophageal, liver, thyroid, ovarian, uterine, and skin cancer cell lines showed at least 50% growth inhibition following 72 hours of roscovitine treatment, compared with vehicle treated cells (see Table 1; FIG. 5A). Among the 270 human cancer cell lines investigated, 52 were of NSCLC origin and 2 (4%) were relatively insensitive to roscovitine (fractional growth, ≧75% compared with vehicle-treated cells), whereas 21 (40%) displayed a modest sensitivity (fractional growth was between 75% and 50% compared with vehicle-treated cells), and 29 (56%) showed marked sensitivity scored as fractional growth, ≦50% versus controls (FIG. 5B).


Effects of roscovitine treatments on proliferation of H522 lung cancer cells were also investigated (FIG. 6A) with concordant results as in this high-throughput experiment. As shown, this cell line was less sensitive than others examined and had wild-type ras status (Table 2). The ras status of 13 to 15 NSCLC cell lines with highest sensitivity to roscovitine is known. Intriguingly, analyses revealed that 12 of 13 (92%) of the lung cancer cells most sensitive to roscovitine treatment have K-ras- or N-ras-activating mutations, whereas none of the NSCLC cell lines with the least sensitivity to roscovitine had such mutations (Table 2; FIG. 5C). Prior work has shown that both H23 and HOP-62 lung cancer cells harbor ras mutations and, as shown in Table 1, are more sensitive to roscovitine that H-522 lung cancer cells. Thus, findings from this large panel of cancer cell lines indicated significant roscovitine sensitivity well beyond those human and murine lung cancer cells already investigated. For lung cancer cells, this response is tightly associated with the presence of ras activation in highly responsive cells.


A tight correlation was therefore found between ras mutations and sensitivity to roscovitine treatment. Activating ras mutations are found in a subset of NSCLCs and this predicts resistance to epidermal growth factor receptor-tyrosine kinase inhibitors (Massarelli et al (2007) 13:2890-2896; Eberhard et al (2005) J. Clin. Oncol. 23:5900-9). The presence of ras mutations has been linked to chromosomal instability (Castanogla et al (2005) 1756:115-125; Perera et al (2008) 29:747-53). Without wishing to be bound by theory, the present inventors predict that ras mutations may confer sensitivity to roscovitine treatment through reduced chromosomal stability. This indicates that roscovitine-based therapies may be effective for lung cancer patients resistant to epidermal growth factor receptor-tyrosine kinase inhibitor-based therapy due to activating ras mutations.


Example 2
Repeat Analysis Using Compound A to D

A repeat analysis was conducted with expansion to include the follow-on molecules Compounds A to D. There was extremely good correlation between the sensitivity of the cells to both roscovitine and Compound A (Pearson correlation=0.9) thereby implying that sensitivity to Compound A is also dependent on ras mutational status.


The cell line data are shown in Table 3 and 4.


Example 3
Investigating the Relationship Between Roscovitine Sensitivity and Sensitivity to Other Drugs

The cell line panel used in the Galimberti manuscript had previously been used to screen a number of other kinase inhibitors (McDermott 2007 PNAS vol 104(50): p 19936-41). When the data for the NSCLC cell lines that overlapped both studies was compared it was immediately apparent that the cell lines most sensitive to roscovitine were not the most sensitive to any of the other kinase inhibitors, in fact roscovitine had a unique profile. Moreover those cell lines more sensitive to roscovitine were less sensitive to EGFR inhibitors; this makes logical sense because EGFR inhibitors are known to be less active in cells that contain k-ras mutations


Example 4
Response of Patient with Mutant Ras Status to Roscovitine

The incidence of nasopharyngeal cancer (NPC) varies, with higher rates in southern Asia, intermediate rates in Mediterranean basin countries as well as in Greenland and Alaska populations, and low rates in most of the western countries (Chang et al 2006 Cancer Epidemiol. Biomarkers Prev. v15 p 1765). A clinical study of R-roscovitine (seliciclib) in patients with previously treated advanced solid tumors that was heavily enriched for NPC patients was performed. Patients were evaluated for 6-month progression-free survival and two dosing schedules of seliciclib were used. Schedule A was 400 mg seliciclib given twice per day for four consecutive days repeated every week. Schedule B was 800 mg seliciclib given once per day for four consecutive days repeated every week. Patients were also evaluated for overall survival, response rate, response duration, safety, and tolerability.


A total of 23 patients were enrolled on the study (11 at 400 mg bid and 12 at 800 mg qd.). Both dose levels were well tolerated and prolonged stable disease among the NPC patients was seen in a number of individuals (Yeo et al 2009 J. Clin. Oncol. 2009; 27:15s, (suppl; abstr 6026).


One NPC patient was treated on schedule B and experienced stable disease for over two years. This patient was Caucasian and thus not from one of the patient populations where NPC is more prevalent. K-Ras mutations are extremely rare in NPC patients. A biopsy sample from this patient was analysed for K-Ras mutational status. DNA was extracted from a paraffin embedded tumor sample and analysed for a total of 12 different mutations in Gly12 and Gly13 which represent the most common K-Ras activating mutations. Analysis was performed using a standard PCR-RFLP methodology as has been reported previously (Hatzaki et al 2001 Molecular and Cellular Probes; v15, 243) which identified a K-Ras activating mutation at Gly12 in the tumor sample.


Thus this patient represents an unusual individual to present with NPC, both being Caucasian and carrying an activating K-Ras mutation, however, he responded well to seliciclib achieving stable disease for greater than two years. This was a longer period of clinical benefit than achieved with four previous therapies.


Example 5
Clinical Study

Adult patients with histologically-confirmed recurrent non-small cell lung cancer were treated in a randomized Phase II study of R-roscovitine (seliciclib) oral capsules. Patients must have had at least two prior systemic treatment regimens and had measurable disease according to RECIST, with an Eastern Cooperative Oncology Group performance status 0-1, adequate bone marrow, hepatic and renal function and ability to swallow capsules. Patients were also at least 3 weeks from prior systemic treatments including investigational anti-cancer therapy, at least 7 days from prior radiation therapy and had recovered from prior toxicities. All patients were dosed with 1200 mg of seliciclib twice per day for three days every two weeks. This cycle of treatment was repeated three times. Patients achieving stable disease at this six week evaluation point were randomised to continue receiving seliciclib on the same schedule, or to receive placebo capsules on an identical schedule. A total of 187 patients were enrolled and treated. Fifty-three patients entered the randomised phase of treatment. Patients continued to be treated with seliciclib or placebo until they had progressive disease by RECIST criteria. Patients receiving placebo who then had progressive disease were permitted to cross over back onto the seliciclib treatment. Patients were evaluated for progression-free survival (PFS), PFS from the time of randomization, overall survival, response, response duration, safety and tolerability.


Where tumor biopsy samples were sufficient and available, an assessment of Ras status was made using a commercially available assay.


Tables









TABLE 1







Fractional growth inhibitory response of human cancer cell lines following 72 hours


treatment with seliciclib (15 μM) displayed from most to least sensitive cell lines.















Legend





15 μM
(Fractional


CellLine
Organ
Histology
seliciclib
Growth)














SNU-398
Liver
hepatocellular
0.0473
>1.5




carcinoma


PL4
Pancreas

0.057
.75-1.5


LU99A
Lung: NSCLC
giant cell carcinoma
0.0948
 .5-.75


NCI-H2122
Lung: NSCLC
non-small cell lung
0.1093
.2-.5




cancer


SW 48
Intestine
colon adenocarcinoma
0.1123
<.2 


T.T
Esophagus
squamous cell
0.1271




carcinoma


EN
Uterus
endometrial carcinoma
0.1503


COLO 853
Skin
malignant melanoma
0.154


HLE
Liver
hepatoma
0.1553


HMCB
Skin
melanoma
0.161


LCLC-97TM1
Lung: NSCLC
large cell lung
0.1711




carcinoma


A-375
Skin
melanoma
0.1771


Detroit 562
Head & Neck
pharynx carcinoma
0.1846


A549
Lung: NSCLC
carcinoma
0.1925


RPMI 2650
Head & Neck
nasal septum quasi-
0.1937




diploid squamous




carcinoma


HT 1080
Miscellaneous
fibrosarcoma
0.2044


AN3CA
Uterus
endometrial
0.2094




adenocarcinoma


AGS
Stomach
gastric adenocarcinoma
0.2157


LU99B
Lung: NSCLC
giant cell carcinoma
0.2318


COR-L23
Lung: NSCLC
large cell carcenoma
0.2341


RT-112
Bladder
urinary bladder
0.243




transitional cell


PFSK-1
Brain
cerebellum
0.249


HCC-366
Lung: NSCLC
non-small cell lung
0.2561




carcinoma


PCI-15
Head & Neck

0.2641


A-204
Muscle
rhabdomyosarcoma
0.2653


JHU-013
Head & Neck

0.2699


G-402
Kidney
renal leiomyoblastoma
0.2708


HGC-27
Stomach
gastric carcinoma
0.2806


Lu-135
Lung
small cell lung
0.2812




carcinoma


SK-N-MC
Brain
neuroepithelioma
0.283


PCI-15B
Head & Neck

0.2847


NCI-H1734
Lung: NSCLC
non-small cell lung
0.2849




cancer


CS1R
Bone

0.2923


TYK-nu
Ovary
carcinoma
0.3005


KU-19-19
Bladder
urinary bladder
0.3033




transitional cell


NCI-H2030
Lung: NSCLC
non-small cell lung
0.3063




cancer


EJ138
Bladder
bladder carcinoma
0.3103


A431
Skin
squamous carcinoma
0.3116


CAL-62
Thyroid
thyroid anaplastic
0.3139




carcinoma


UO-31
Kidney

0.3152


TOV-112D
Ovary
endometrioid
0.3156




carcinoma


RT112/84
Bladder
bladder carcinoma
0.318




epithelial


COLO 320DM
Intestine
carcinoma of sigmoid
0.3188




colon


SAS
Head & Neck
tongue squamous
0.3207




carcinoma


JHH-6
Liver
undifferentiated
0.3234




hepatocellular




carcinoma


NCI-H2347
Lung: NSCLC
non-small cell lung
0.3299




cancer


VM-CUB1
Bladder
urinary bladder
0.3307




transitional cell


NCI-H1568
Lung: NSCLC
non-small cell lung
0.3317




cancer


NCI-H1299
Lung: NSCLC
non-small cell lung
0.3352




cancer


SNG-M
Uterus
adenocarcinoma
0.3393


KP-3
Pancreas
adenosquamous
0.3396




carcinoma


NAE
Skin
melanoma
0.3413


XPA-4
Pancreas

0.3444


CAL-12T
Lung: NSCLC
non-small cell lung
0.3472




carcinoma


UM-UC-3
Bladder
transitional cell
0.3538




carcinoma


G-401
Kidney
rhabdoid tumor
0.3542




(formerly classified as




Wilms' tumor


MS751
Cervix
cervical carcinoma
0.3573


MKN1
Stomach
adenosquamous
0.3594


PCI-4A
Head & Neck
squamous cell
0.3628




carcinoma


PCI-38
Head & Neck
H&N
0.3656


LS174T
Intestine
colon adenocarcinoma
0.3713


JHU-028EP
Head & Neck

0.3716


SW 780
Bladder
transitional cell
0.3743




carcinoma


M-14
Skin

0.3765


LU65C
Lung: NSCLC
giant cell carcinoma
0.3767


LU99C
Lung: NSCLC
giant cell carcinoma
0.3864


Caki-1
Kidney
Renal
0.3885


SU.86.86
Pancreas
adenocarcinoma
0.3887


H2052
Lung
pleural mesothelioma
0.3892


HSC-4
Head & Neck
tongue squamous
0.3894




carcinoma


HuH-7
Liver
hepatoma
0.3911


HTC-C3
Thyroid
throid carcinoma
0.3914


MES-SA
Uterus
uterus sarcoma
0.3922


FTC-133
Thyroid
follicular thyroid
0.393




carcinoma


EBC-1
Lung: NSCLC
squamous cell
0.3971




carcinoma


786-O
Kidney
renal cell
0.3998




adenocarcinoma


PC-3
Prostate
adenocarcinoma
0.4021


OVCAR-5
Ovary

0.4053


KYSE-450
Esophagus
esophageal squamous
0.4067




cell carcinoma


OE21
Esophagus
esophageal squamous
0.4083




cell carcinoma


Hs 633T
Miscellaneous
fibrosarcoma
0.41


A673
Muscle
rhabdomyosarcoma
0.4111


NCI-H1975
Lung: NSCLC
adenocarcinoma; non-
0.4117




small cell lung cancer


MCF7
Breast
adenocarcinoma
0.4137


KYSE-510
Esophagus
esophageal squamous
0.4141




cell carcinoma


NCI-H2023
Lung: NSCLC
non-small cell lung
0.4148




cancer


BEN
Lung: NSCLC
lung carcinoma
0.4149


RVH-421
Skin
melanoma
0.4165


639-V
Bladder
ureter transitional cell
0.4196




carcinoma


BFTC-905
Bladder
urinary bladder
0.4198




transitional cell


8505C
Thyroid
thyroid carcinoma
0.4214


Panc 08.13
Pancreas
adenocarcinoma
0.4222


JHU-019
Head & Neck

0.4229


A-427
Lung: NSCLC
carcinoma
0.4252


Hs 766T
Pancreas
adenocarcinoma
0.4284


KATO III
Stomach
signet ring
0.4299




adenocarcinoma


SiHa
Cervix
cervical squamous cell
0.4302




carcinoma


HUP-T3
Pancreas
Carcinoma
0.4333


NCI-H1915
Lung: NSCLC
non-small cell lung
0.4337




cancer


KP-3L
Pancreas
adenosquamous
0.4338




carcinoma


ESS-1
Uterus
endometrial stromal
0.4399




sarcoma


T98G
Brain
glioblastoma
0.4404


COLO 205
Intestine
colon adenocarcinoma
0.4437


SK-MES
Lung: NSCLC
squamous carcinoma
0.4439


BHT-101
Thyroid
thyroid carcinoma
0.4486


NCI-H647
Lung: NSCLC
non-small cell lung
0.4521




cancer


NCI-H2170
Lung: NSCLC
squamous cell
0.4534




carcinoma


MGH-MC-1
Skin
melanoma
0.4543


HuCCT1
Liver
bile duct carcinoma
0.4559


NCI-H2452
Lung
mesothelioma
0.4571


NCI-H2085
Lung: NSCLC
non-small cell lung
0.4597




cancer


Ca9-22
Head & Neck
gingival carcinoma
0.4623


LU65A
Lung: NSCLC
giant cell carcinoma
0.4627


HPAF-II
Pancreas
adenocarcinoma
0.4628


HEC-1
Uterus
endometrial
0.4632




adenocarcinoma


MDA-MB-231
Breast
adenocarcinoma
0.4643


HMVII
Skin
vaginal malignant
0.4646




melanoma


NCI-H1792
Lung: NSCLC
adenocarcinoma
0.4649


SW 156
Kidney
hypernephroma
0.467


PCI-4B
Head & Neck

0.4686


KYSE-410
Esophagus
esophageal squamous
0.4693




cell carcinoma


J82
Bladder
transitional cell
0.4753




carcinoma


AU565
Breast
adenocarcinoma
0.4762


NCI-H1703
Lung: NSCLC
non-small cell lung
0.4772




cancer


IGROV-1
Ovary

0.4776


GCT
Miscellaneous
fibrous histiocytoma
0.4799


HCC-827
Lung: NSCLC
non-small cell lung
0.4812




carcinoma


MIA PaCa-2
Pancreas
adenocarcinoma
0.4826


A2780
Ovary
ovarian carcinoma
0.4827


HT115
Intestine
colon carcinoma
0.4837


HO-1-u-1
Head & Neck
mouth floor squamous
0.4858




cell carcinoma


Panc 04.03
Pancreas
adenocarcinoma
0.4899


MDA-H2774
Ovary

0.491


UMC-11
Lung
carcinoma
0.4912


Panc 10.05
Pancreas
adenocarcinoma
0.493


MEL-JUSO
Skin
melanoma
0.4945


PCI-15A
Head & Neck

0.4965


WM 266-4
Skin
melanoma
0.4972


ACHN
Kidney
renal cell
0.4977




adenocarcinoma


HT-1197
Bladder
carcinoma
0.5024


LCLC-103H
Lung: NSCLC
large cell lung
0.5051




carcinoma


C-4 I
Cervix
cervical carcinoma
0.5067


WM-115
Skin
melanoma
0.5068


H2869
Lung
pleural mesothelioma
0.5086


AZ-521
Stomach
adenocarcinoma
0.5115


SK-MEL-37
Skin
melanoma
0.5209


NH-6
Kidney
adrenal gland
0.5218




neuroblastoma


HSC-3
Head & Neck
tongue squamous
0.5223




carcinoma


HT-29
Intestine
colorectal
0.5243




adenocarcinoma


T24
Bladder
transitional cell
0.5262




carcinoma


JHU-028
Head & Neck

0.5325


PCI-6B
Head & Neck

0.5328


HCT-15
Intestine
colon adenocarcinoma
0.5363


T84
Intestine
colon carcinoma
0.5371


C32
Skin
melanoma
0.5391


HSC-2
Head & Neck
mouth squamous
0.5464




carcinoma


MG-63
Bone
osteosarcoma
0.5484


NCI-H1573
Lung: NSCLC
adenocarcinoma
0.5485


NCI-H1048
Lung
small cell lung cancer
0.5502


KMRC-1
Kidney
carcinoma
0.554


PCI-30
Head & Neck

0.5541


NUGC-3
Stomach
carcinoma
0.5557


PA-TU-8902
Pancreas
adenocarcinoma
0.5577


BHY
Head & Neck
oral squamous cell
0.5602




carcinoma


KP-4
Pancreas
ductal cell carcinoma
0.5607


SW 13
Kidney
adrenal cortex
0.5624




adenocarcinoma


Panc 03.27
Pancreas
adenocarcinoma
0.5632


SCaBER
Bladder
squamous cell
0.5642




carcinoma


C-33 A
Cervix
carcinoma
0.5677


MFM-223
Breast
breast carcinoma
0.5683


U-2 OS
Bone
osteosarcoma
0.5686


GAMG
Brain
glioma
0.571


SCC-25
Head & Neck
tongue squamous cell
0.571




carcinoma


Saos-2
Bone
osteosarcoma
0.5733


CAL-29
Bladder
urinary bladder
0.5744




transitional cell


B-CPAP
Thyroid
thyroid carcinoma
0.5754


PANC-1
Pancreas
ductal adenocarcinoma
0.5761


IGR-1
Skin
melanoma
0.5764


PC-14
Lung: NSCLC
adenocarcinoma
0.5776


PA-TU-8988S
Pancreas
Adenocarcinoma
0.5791


CaR-1
Intestine
rectum adenocarcinoma
0.5795


PCI-6A
Head & Neck

0.5818


SW 900
Lung: NSCLC
non-small cell lung
0.5842




cancer


NCI-H727
Lung
carcinoma bronchus
0.5866


YAPC
Pancreas
Carcinoma
0.588


OVCAR-8
Ovary

0.5886


Ca Ski
Cervix
cervical epidermoid
0.591




carcinoma


MFE-280
Uterus
endometrial
0.5959




adenocarcinoma


VMRC-RCZ
Kidney
renal cancer
0.5994


769-P
Kidney
renal cell
0.602




adenocarcinoma


BPH-1
Prostate
benign prostate
0.6039




hyperplasia


KP-1N
Pancreas
pancreatic tumor
0.6045


SW 1573
Lung: NSCLC
alveolar cell carcinoma
0.6076


Calu-1
Lung: NSCLC
non-small cell lung
0.6124




cancer


143B
Bone
osteosarcoma
0.6124


5637
Bladder
carcinoma
0.6151


H2373
Lung
pleural mesothelioma
0.6168


HOS
Bone
osteosarcoma
0.617


SHP-77
Lung

0.617


SCCH-196
Miscellaneous
small round cell
0.6177




sarcoma


HARA
Lung: NSCLC
squamous cell lung
0.6182




carcinoma


NCI-H2172
Lung: NSCLC
non-small cell lung
0.6197




cancer


DoTc2 4510
Cervix
cervical carcinoma
0.6205


Daoy
Brain
medulloblastoma
0.6209


NCI-H522
Lung: NSCLC
non-small cell lung
0.6262




cancer


NCI-H1781
Lung: NSCLC
adenocarcinoma
0.6273


NCI-H1793
Lung: NSCLC
adenocarcinoma, non-
0.6274




small cell lung cancer


KYSE-140
Esophagus
esophageal squamous
0.6278




cell carcinoma


NCI-H1651
Lung: NSCLC
non-small cell lung
0.6289




cancer


JHU-022
Head & Neck

0.6294


EPLC-272H
Lung: NSCLC
epidermoid lung
0.6305




carcinoma


SNU-449
Liver
hepatocellular
0.6309




carcinoma


T47D
Breast
breast tumor
0.6314


A2058
Skin
melanoma
0.6341


JHH-2
Liver
hepatocellular
0.635




carcinoma


NCI-H1435
Lung: NSCLC
non-small cell lung
0.6379




cancer


SN-12C
Kidney
renal cell carcinoma
0.6383


G-292 Clone
Bone
osteosarcoma
0.6393


A141B1


TCCSUP
Bladder
transitional cell
0.6407




carcinoma


RERF-GC-1B
Stomach
adenocarcinoma
0.6411


SISO
Cervix
cervix adenocarcinoma
0.6424


Sarc9371
Bone
sarcoma
0.6425


RERF-LC-Sq1
Lung: NSCLC
squamous carcinoma
0.6428


Calu-3
Lung: NSCLC
adenocarcinoma
0.6463


1A6
Bladder
carcinoma
0.6475


GTL-16
Stomach

0.6482


SW756
Cervix
cervical squamous cell
0.6484




carcinoma


NCI-H2228
Lung: NSCLC
non-small cell lung
0.6493




cancer


ABC-1
Lung: NSCLC
adenocarcinoma
0.6543


SKG-IIIb
Cervix
squamous cell
0.6636




carcinoma


RCM-1
Intestine
rectum adenocarcinoma
0.6689


BxPC-3
Pancreas
adenocarcinoma
0.671


CHSA8926
Bone
chondrosarcoma
0.674


SW-1710
Bladder
urinary bladder
0.6764




transitional cell


CAL-33
Head & Neck
tongue squamous cell
0.6834




carcinoma


COLO-680N
Esophagus
esophagus squamous
0.6838




cell carcinoma


DAN-G
Pancreas
Adenocarcinoma
0.6841


NCI-H520
Lung: NSCLC
squamous cell
0.6863




carcinoma


AsPC-1
Pancreas
adenocarcinoma
0.6879


HT 1376
Bladder
bladder carcinoma
0.6897


NCI-H1944
Lung: NSCLC
non-small cell lung
0.6921




cancer


LNZTA3WT4
Brain
glioblastoma
0.6936


S-117
Thyroid
thyroid sarcoma
0.696


HCC1395
Breast
primary ductal
0.6999




carcinoma


BT-20
Breast
carcinoma
0.7016


LUDLU-1
Lung: NSCLC
squamous cell
0.7029




carcinoma


HPAC
Pancreas
adenocarcinoma
0.7062


BFTC-909
Kidney
kidney transitional cell
0.7132




carcinoma


DBTRG-05MG
Brain
glioblastoma
0.7139


SK-N-AS
Brain
neuroblastoma
0.7261


SK-OV-3
Ovary
ovary adenocarcinoma
0.7375


GP5d
Intestine
colon adenocarcinoma
0.7382


SBC-5
Lung
small cell carcinoma
0.7399


22RV1
Prostate
prostate carcinoma
0.7432


SW620
Intestine

0.7486


H2596
Lung
pleural mesothelioma
0.7486


C-4 II
Cervix
cervical carcinoma
0.7489


NCI-H630
Intestine
colorectal
0.7543




adenocarcinoma


BT-549
Breast
ductal carcinoma
0.758


SW 1116
Intestine
colon adenocarcinoma
0.7592


NCI-H841
Lung
small cell lung cancer
0.7639


NCI-H1581
Lung: NSCLC
lung cancer
0.7659


PC-9
Lung: NSCLC
non-small cell lung
0.7822




cancer


HDQ-P1
Breast
breast carcinoma
0.8137


HCC38
Breast
primary ductal
0.8297




carcinoma


DK-MG
Brain
glioma
0.8572


H2722
Lung
pleural mesothelioma
0.8974


HeLa
Cervix
cervical
0.9192




adenocarcinoma


RT4
Bladder
bladder transitional cell
0.9342




carcinoma


H4
Brain
glioma
0.9708
















TABLE 2A







Ras status for the 15 NSCLC cell lines with


highest growth inhibitory response to seliciclib.


Most Seliciclib Sensitive NSCLC Cells













Fractional Growth



Cell Line
RAS Status
Seliciclib







LU99A
Mutant (K-RAS)
0.0948



NCI-H2122
Mutant (K-RAS)
0.1093



LCLC-97TM1
Mutant (K-RAS)
0.1711



A549
Mutant (K-RAS)
0.1925



LU99B
Mutant (K-RAS)
0.2318



COR-L23
Mutant (K-RAS)
0.2341



HCC-366
Not Known
0.2561



NCI-H1734
Mutant (K-RAS)
0.2849



NCI-H2030
Mutant (K-RAS)
0.3063



NCI-H2347
Mutant (K-RAS)
0.3299



NCI-H1568
Not Known
0.3317



NCI-H1299
Mutant (N-RAS)
0.3352



CAL-12T
Wild-type
0.3472



LU65C
Mutant (K-RAS)
0.3767



LU99C
Mutant (K-RAS)
0.3864

















TABLE 2B







Ras status for the 15 NSCLC cell lines with


least growth inhibitory response to seliciclib.


Least Seliciclib Sensitive NSCLC Cells













Fractional Growth



Cell Line
RAS Status
Seliciclib







NCI-H522
Wild-type
0.6262



NCI-H1781
Wild-type
0.6273



NCI-H1793
Wild-type
0.6274



NCI-H1651
Wild-type
0.6289



EPLC-272H
Wild-type
0.6305



NCI-H1435
Wild-type
0.6379



RERF-LC-Sq1
Wild-type
0.6428



Calu-3
Wild-type
0.6463



NCI-H2228
Wild-type
0.6493



ABC-1
Wild-type
0.6543



NCI-H520
Wild-type
0.6863



NCI-H1944
Wild-type
0.6921



LUDLU-1
Wild-type
0.7029



NCI-H1581
Wild-type
0.7659



PC-9
Wild-type
0.7822

















TABLE 3







Cell line data for compounds A, B, C and D and roscovitine









IC50 micromolar
















Ras


R-






Cell Line
Status
Mutation
Tissue
roscovitine
B
C
D
A


















H1650
WT

Lung
21.9
6.5
3.7
1.2
0.5


MDA-MB-436
WT

Breast
17.8
6.6
3.4
1.0
0.4


H2052
WT

Mesothelioma
17.1
5.2
2.4
0.9
0.3


LoVo
K-Ras
G13D
Colon
17.1
4.5
2.2
0.8
0.7


Saos-2
WT

Osteosarcoma
17.0
5.3
2.5
1.4


H292
WT

Lung
15.4
6.6
2.3
0.9
0.4


Colo205
WT

Colon
13.3
4.5
2.3
0.8
0.3


HT-29
WT

Colon
12.5
4.1
1.7
1.2


NCI-H460
K-Ras
Q61H
Lung
12.3
2.8
2.2
0.7
0.5


LP-1
WT

Myeloma
11.7

1.6
0.5


A549
K-Ras
G12S
Lung uterine
10.5
3.0
1.6
0.5
0.2


MESSA
WT

sarcoma
10.0
3.6
1.6
0.5
0.2


HCT 116
K-Ras
G13D
Colon
9.5

1.6
0.4


MCF7
WT

Breast
9.4
3.6
1.6
0.4
0.3


NCI-H929
N-Ras

Myeloma
8.1
5.2
2.4
0.8
0.4


A2780
WT

Ovary
6.7
2.6
1.1
0.4
0.4


H358
K-Ras
G12C
Lung
5.8
2.7
0.8
0.3
0.2


Median



12.3
4.5
2.2
0.8
0.4


IC50



















TABLE 4








Number of cell lines with




mutant Ras status with IC50



Compound
values below the median IC50









R-roscovitine
5 out of 6



Compound B
4 out of 5



Compound C
5 out of 6



Compound D
6 out of 6



Compound A
3 out of 5










All publications mentioned in the above specification are herein incorporated by reference. Various modifications and variations of the described methods and system of the invention will be apparent to those skilled in the art without departing from the scope and spirit of the invention. Although the invention has been described in connection with specific preferred embodiments, it should be understood that the invention as claimed should not be unduly limited to such specific embodiments. Indeed, various modifications of the described modes for carrying out the invention which are obvious to those skilled in cancer biology or related fields are intended to be within the scope of the following claims.

Claims
  • 1. A method for determining whether or not a cancer subject is suitable for treatment with a purine-based roscovitine-like inhibitor, which method comprises the step of determining the ras status of the cancer, wherein a determination that the subject has mutant ras status is indicative that the subject is suitable for treatment with a purine-based roscovitine-like inhibitor.
  • 2. A method according to claim 1, wherein a determination that the subject has wild-type ras status is indicative that the subject is unsuitable for treatment with a purine-based roscovitine-like inhibitor.
  • 3. A method for selecting a therapy for treating a cancer subject which comprises the step of determining whether the subject is suitable for treatment with a purine-based roscovitine-like inhibitor using a method according to claim 1, and selecting treatment with a purine-based roscovitine-like inhibitor if the subject has mutant ras status.
  • 4. A method for selecting a therapy for treating a cancer subject which comprises the step of determining whether the subject is suitable for treatment with a purine-based roscovitine-like inhibitor using a method according to claim 2, and selecting an alternative type of treatment if the subject has wild-type ras status.
  • 5. A method for treating cancer in a subject by administering a therapeutically effective amount of a purine-based roscovitine-like inhibitor to the subject, wherein the subject has a cancer characterised by mutant ras status.
  • 6. A method for treating cancer in a subject, which comprises the following steps: (i) determining the ras status of the cancer; and(ii) administering a therapeutically effective amount of a purine-based roscovitine-like inhibitor to the subject, if the cancer has mutant ras status.
  • 7. A method according to claim 3, wherein the treatment involves the use of a purine-based roscovitine-like inhibitor in combination with another therapeutic agent.
  • 8. A method according to claim 7, wherein the treatment involves the use of a purine-based roscovitine-like inhibitor in combination with a receptor tyrosine kinase (RTK) inhibitor.
  • 9. A method according to claim 8, wherein the treatment involves the use of a purine-based roscovitine-like inhibitor in combination with an EGF-R inhibitor and/or a MEK inhibitor.
  • 10. A method according to claim 7, wherein the treatment involves the use of a purine-based roscovitine-like inhibitor in combination with an m-TOR inhibitor.
  • 11. A method according to claim 7, wherein the treatment involves the use of a purine-based roscovitine-like inhibitor in combination with a PI3-kinase inhibitor.
  • 12. A method according to claim 3, wherein the treatment involves the use of a purine-based roscovitine-like inhibitor in combination with a prodrug or pharmaceutical preparation in which the active ingredient is a microtubule targeting agent.
  • 13. A method according to claim 12, wherein the microtubule targeting agent is paclitaxel, docetaxel or a taxane.
  • 14. A method according to claim 3, wherein the purine-based roscovitine-like inhibitor is selected from roscovitine, Compound A, B, C and D, bohemine and olomoucine.
  • 15. A method according to claim 14, wherein the purine-based roscovitine-like inhibitor is roscovitine.
  • 16. A method according to claim 3, wherein a subject having mutant ras status expresses K-ras, H-ras or N-ras mutant protein.
  • 17. A method according to claim 1, wherein the cancer is selected from lung, pancreas, colorectal, breast, liver, intestine, oesophagus, uterus, skin, head & neck, nasopharyngeal and haematological cancer, such as Acute Myeloid Leukemia (AML).
  • 18. A method according to claim 17, wherein the cancer is lung or colorectal cancer.
  • 19. A method according to claim 18, wherein the cancer is non small-cell lung carcinoma (NSCLC).
  • 20. A method according to claim 1, wherein the cancer is insensitive to chemotherapy with other agents.
  • 21. A method according to claim 20, wherein the cancer is insensitive to chemotherapy with cytotoxic agents.
  • 22. A method according to claim 21, wherein the cancer is insensitive to treatment with targeted agents such as EGFR inhibitors and mTOR inhibitors.
RELATED APPLICATIONS

The present application claims priority to U.S. Provisional Application No. 61/425,621, filed Dec. 21, 2010. The entire contents of this application are hereby incorporated herein by reference in their entirety.

GOVERNMENT FUNDING

This invention was made with government support under contract numbers CA087546 and CA111422 awarded by the National Institutes of Health. The government has certain rights in the invention.

Provisional Applications (1)
Number Date Country
61425621 Dec 2010 US