The present invention relates generally to etchant solutions and their use in making porous semiconductor materials, and porous semiconductor materials produced therewith.
Porous devices used in biomedical and bioanalytical assays (e.g., affinity biosensors, immobilized enzyme biocatalysts, drug delivery devices, and tissue engineering devices) that require infiltration of reagents must be designed to enable facile ingress and egress through the porous matrix. Such devices include porous silicon optical sensors (e.g., microcavities, Bragg mirrors, thin film interferometers, and Rugate filters) fabricated by anodic electrochemical dissolution of a single crystal wafer in an HF-containing electrolyte. The detection principle of these devices is based on measuring changes in refractive index caused by substances binding to receptors immobilized within the volume of the porous matrix. For biosensor applications, many target molecules of interest possess molecular weight exceeding 10 kDa. A typical immunoglobin like IgG has a molecular weight of 150 kDa and a diameter of ˜15 nm. Sandwich-type immunoanalytical assays require stacking of two or more IgG-type molecules. Hence, conducting such assays using a sensor where the detection signal is generated from interactions that occur within the volume of the device requires that the morphology be sufficient to accommodate these types of biomolecules.
Mesoporous silicon microcavity sensors fabricated from p+ silicon have been successfully utilized in detection assays for biomolecular reagents less than ˜30 kDa. Biomolecules exceeding this size require larger pore dimensions, which can be achieved through modification of mesoporous structure or by fabricating macroporous devices. Detection of 30-50 kDa proteins using a post-etch-modified p+ mesoporous microcavity has been successfully demonstrated (DeLouise & Miller, “Optimization of Mesoporous Silicon Microcavities for Proteomic Sensing,” Mat. Res. Soc. Symp. Proc. 782:A5.3.1 (2004); DeLouise & Miller, “Quantitative Assessment of Enzyme Immobilization Capacity in Porous Silicon,” Anal. Chem. 76(23):6915-6920 (2004)). Those experienced in the art know that a wide range of pore sizes and channel morphologies can be fabricated directly by changing electrochemical etch parameters including etchant formulation, doping level and type, and current density. However, systematic teaching on this topic does not exist despite the vast amount of published literature (Zhang, “Morphology and Formation Mechanisms of Porous Silicon,” Electrochem. Soc. 151(1):C69-C80 (2004); Lehman et al., Mater. Sci. Eng. B69:11 (2000)) on the subject. Consequently, it currently remains a significant challenge to consistently control the fabrication of reproducible structures with an understanding of the trade-offs associated with generating large pore diameters that enable facile biomolecular infiltration while minimizing interface roughness to yield the desired high quality optical device characteristics. Roughness characteristics resulting from large pore devices may be thought of as a distance between crests of a wave front. Peak-to-peak distances and the amplitude of the peak to valley are much larger for macropores than for mesopores and, hence, rougher on an optical scale, as illustrated in
The quality of biosensor devices designed around either type of porous microstructure and the extent to which equivalently functional devices can be reproducibly made depends critically on the electrochemical etch cell design and the process control of critical parameters such as current density, doping level, and etchant composition. Device sensitivity on the other hand is linked to various design parameters including device type (single layer, mirror, or microcavity) (Anderson et al., “Sensitivity of the Optical Properties of Porous Silicon Layers to the Refractive Index of Liquid in the Pores,” Phys. Stat. Sol. (a) 197(2):528-533 (2003)), detection mode (reflection or photoluminescence), spectral operating range (IR, Vis) (Canham et al., “Derivatized Porous Silicon Mirrors: Implantable Optical Components with Slow Resorbability,” Phys. Stat. Sol. (a) 182:521 (2000)), as well as the efficacy of the surface bound detection chemistry.
It is known that there are many etch conditions under which macroporous silicon from n-type silicon can be made. A particular recipe using CrO3 has been under investigation (Ouyang et al., “Enhanced Control of Porous Silicon Morphology from Macropore to Mesopore Formation,” Phys. Stat. Solidi (a) 202(8):1396-1401 (2005)). While useful for fabricating large pores exceeding 150 nm diameter, adverse side effects have been identified with its use. Because CrO3 is a strong oxidizer, it chemically attacks the porous scaffold during etching as subsequent layers are formed deeper into the wafer. An etch pit forms near the surface layer and the width of the pore channel varies with depth. Etch times must be shortened to minimize degradation of optical quality using this additive. Moreover, the large pore diameter and corresponding interface roughness make it difficult to reproducibly achieve high optical quality devices. Hence, an etchant formulation not requiring this additive is desired.
Finally it has been reported that using basic solutions of KOH is an effective means to alter the porosity and pore diameters of both p-type silicon (DeLouise & Miller, “Trends in Porous Silicon Biomedical Devices: Tuning Microstructure and Performance Trade-Offs in Optical Biosensors,” Proc. SPIE 5357:111-125 (2004)) and n-type material (Tinsley-Brown et al., “Tuning the Pore Size and Surface Chemistry of Porous Silicon for Immunoassays,” Physica Status Solidi A, 182:547-53 (2000)).
What is lacking in the art is an understanding of how individual etching parameters (current density, etchant solution component concentrations, etc.) and post etch treatments affect porous semiconductor structure morphology (e.g., pore diameter and porosity). Obtaining an understanding of these parameters and their effects on the porous product will allow the design of etching procedures and etchant solutions for reliable and reproducible fabrication of porous semiconductor structures tuned for specific applications.
The present invention is directed to overcoming these and other deficiencies in the art.
One aspect of the present invention relates to an etch solution including about 0-50% ethanol, about 0-25% dimethyl formamide, about 0-30% glycerol, about 5-20% hydrofluoric acid, about 0-90% water, and about 0-1% surfactant.
A second aspect of the present invention relates to a method of preparing a porous semiconductor structure. This method involves providing a semiconductor material, and etching the semiconductor material in an etch solution according to the first aspect of the present invention, under conditions effective to form the porous semiconductor structure.
A third aspect of the present invention relates to porous semiconductor structures produced according to the method of the second aspect of the present invention.
The methods of the present invention provide ways to tailor the pore morphology of porous semiconductor structures that can be used in biomedical and diagnostic devices. The porous semiconductor structures of the present invention may be used for drug delivery, tissue engineering, or for biosensors for detecting microbial pathogens, environmental toxins, and large macromolecule binding conjugates of, e.g., molecular weights exceeding 10 kDa.
FIGS. 3A-B are a cross-sectional (
FIGS. 4A-F are SEM images of porous silicon structures produced at a current density of 30 mA/cm2 using etchant #5 (
FIGS. 11A-B are SEM images of microcavity structures produced using etchant #17 following surface roughening (see Table 8).
FIGS. 18A-C are reflection spectra of a microcavity with 66/84% porosity before and after oxidation (
FIGS. 21 A-B are graphs illustrating the effect on the reflectance spectra of a microcavity exposed to 1.5 mM KOH in aqueous-ethanol for 15 minutes. As shown in
FIGS. 22A-B are graphs of the blue shift versus KOH time and molarity (
FIGS. 23A-B are graphs of the reflectance spectra (
FIGS. 24A-B are graphs of the absorbance intensity indicating the relative amount of conjugation product of three microcavity samples as a function of KOH exposure (
The present invention relates to chemical formulations and processes for tuning the pore morphology of an electrochemically fabricated porous semiconductor device covering any sensor detection modality (electrical or optical) requiring infiltration through the porous matrix, particularly optical devices such as Rugate filters, Bragg mirrors, dielectric mirrors, Fabry-Perot microcavities, and thin film interference devices or other biomedical applications of porous silicon where pore infiltration is a concern, such as in immobilized enzyme supports, biofiltration, drug delivery, and cell attachment scaffolding for tissue engineering. Semiconductor materials include un-doped silicon, p-doped silicon, n-doped silicon, and silicon alloys. Examples of suitable semiconductor materials are described in PCT Application WO 02/068957 to Chan et al., which is hereby incorporated by reference in its entirety. Pore diameter and porosity are a complex function of current density, silicon doping level, and etchant formulation.
Generally, the etching process involves introducing the semiconductor material (to be etched) into an etching cell that includes an anode and a cathode. An etchant is introduced into the etch cell (providing contact between anode and cathode) and a current is applied to initiate the electrochemical etch process. A constant current may be applied to produce, for example, single layer semiconductor materials. Alternatively, current through the cell can be adjusted over a time course to create periodic porous materials, such as Bragg reflectors. For example, multilayer films of alternating porosity may be fabricated by cycling between a higher and lower density, for example between about 20 mA/cm2 and about 60 mA/cm2. After etching, the porous silicon sample is removed from the etch cell, rinsed with ethanol, then water, and dried under a stream of N2 gas. Samples of various thickness are prepared by using a constant current density of and varying the etch time from 1 to 300 seconds.
Electropolishing the surface of the silicon material before fabricating the porous semiconductor structure creates pore nucleation sites, which help guide pore channel growth. Post etch processing using chemical bases can also be used to further alter the porous morphology. For example, to remove nanostructured features that fill the pore channels or to widen the pore diameters, porous silicon films may be treated with a chemical base (e.g. 0.05 mM-0.5 M KOH) post etch process as described herein. A quantitative relation exists between the amount of porous silicon material removed with exposure time and base concentration. Typically, a high concentration aqueous base stock solution is diluted with 95% ethanol to insure the base solution can infiltrate porous silicon. After base exposure, samples are rinsed in ethanol, then water, and dried under a stream of N2 gas.
The chemical etch formulations of the present invention may include water, hydrofluoric acid, glycerol, ethanol, dimelthylformamide, and additives including surfactants and oxidizing agents. These formulations enable the systematic tailoring of pore diameter and porosity of porous silicon fabricated from n+ silicon (0.01-0.02 ohm-cm).
One aspect of the present invention relates to an etch solution 0 including about 0-50% ethanol, about 0-25% dimethyl formamide, about 0-30% glycerol, about 5-20% hydrofluoric acid, about 0-90% water, and about 0-1% surfactant.
Hydrofluoric acid concentrations disclosed herein refer to pure hydrofluoric acid. One of skill in the art will readily understand how to use diluted hydrofluoric acid solutions in the etch solutions of the present invention, such that the total hydrofluoric acid solution falls within the desired range. Deionized water and distilled water are preferred. The percentages of the components of the etchant solutions of the present invention refer percent by weight.
Any suitable surfactant may be used in combination with the other etchant components. Exemplary surfactants include, without limitation, nonionic surfactants including alkylphenol ethoxylate, alcohol ethoxylates, sorbitan esters (Rheodol series), ethylene oxide/polyethylene oxide block polymers (Pluronic series, e.g., F108, F38, P105, L101, and L31, or Dowfax series), and alkylpolyglucosides (Triton series); cationic surfactants including all quaternary ammonium compounds; and anionic surfactants including alkyl, aryl, and ether sulfates and phosphates.
Suitable oxidizing agents according to the present invention include, without limitation, chromium trioxide, ammonium persulfate, osmium tetroxide, and potassium permanganate.
Using the etchant formulations of the present invention, pore diameter can be tuned over a range from 20 nm to 150 nm, which is of particular biochemical interest. The value of the current density at which the electropolishing limit is attained depends on the etchant formulation. Generally, lowering the HF concentration increases porosity and, hence, lowers the current density at which electropolishing occurs; and for a fixed HF concentration, adding solvents increases porosity and decreases pore size.
As described in the Examples, the preferred ranges of the components will vary according to the nature of the porous semiconductor material that is to be made. The properties of the porous semiconductor material can be controlled by selecting appropriate etch conditions, including etching composition and current density.
Preferred etchant solutions include those described in the Examples. According to one embodiment, the etchant solutions include between about 20 to about 80% water, about 5 to about 20% hydrofluoric acid, about 10 to about 50% ethanol, about 0 to about 30% DMF, about 0 to about 30% glycerol, and about 0.01 to about 0.3% surfactant.
The following examples are intended to illustrate, but by no means are intended to limit, the scope of the present invention as set forth in the appended claims.
A design of experiments (DOE) approach was taken to understand the etching parameter space for a formulation consisting of 20% hydrofluoric acid (HF). The HF concentration was kept constant so that the effects of solvent level could be better determined. It is well documented that raising HF levels increases etch rate and lowers porosity in p+ silicon. Lower levels of HF decrease the etch rate and increase the porosity. Hence, with lower levels of HF, larger pore diameters are achieved and the electropolishing limit is reached at lower current densities.
A two level ½ factorial DOE was conducted with four control factors including the solvents comprising the etchant formulation (including ethanol (10 and 25%), DMF (10 and 25%), and glycerol (0 and 30%)) and the current density (10 and 30 mA/cm2). The glycerol was utilized to raise viscosity, and ethanol and DMF to alter the surface tension of the etching solution. All solvents will lessen the dielectric constant and surface tension relative to water, but ethanol will particularly do so. Physical properties of the solvents are listed in Table 1A.
The responses for this DOE included porosity (% P), etch rate measured by gravimetric means, and pore diameter determined by SEM. An additional response analyzed was the value of the porosity at 30 mA/cm2 relative to that at 10 mA/cm2 (“% P Ratio 30/10 mA/cm2”). To simplify multilayer device fabrication (e.g., Bragg mirror, microcavity devices) it is desired that the value of this response be greater than 2-3% and positively correlated with the current density. Eight unique etching formulations, shown in Table 1B, were investigated to complete the DOE. In addition to these, during the period of time over which the DOE was conducted, more than 30 total etchant formulations were studied to assess the effect of ammonium persulfate (APS), CrO3, Pluronic F108, L31, F38, L101, and P105 surfactants, DMSO, and HF concentration. The formulations for etchants that provided significant learning are also included in Table 1B. All etchant formulations were evaluated using single side polished n+ (0.01-0.02 ohm-cm) Si (100) wafers that were cleaned prior to etching by: N2 blow dry to remove dust, dip in diluted HF to remove oxide, water rinse, and N2 blow dry. A single layer porous silicon film was etched for either 100 seconds or 300 seconds.
SEM images of a microcavity etched with a 5% HF, 0.05% Pluronic ution are shown in FIGS. 3A-B.
The SEM images for etchant #2 (
Images for etchant #17 (FIGS. 5A-D) also illustrate the significant effect that post etch KOH treatment has on pore morphology. A rounding of the pores is evident, as is a pore widening of ˜34% (see
It is of interest to note that in the SEM images shown in
In relation to optimizing pore morphology, a generally accepted relation between porosity and pore diameter is described. Small pore diameter is associated with higher porosity. This relation describes a high surface area mesoporous material comprising a dendritic pore channel morphology that results from the nucleation of numerous pore channels that sustain current conduction along which etching occurs. Large pore diameter is associated with lower porosity. This relation describes a lower surface area macroporous material consisting of fewer pore channels and a smoother pore channel morphology. This results from the tendency for only a few of the nucleated pore channels to sustain current conduction and growth.
Pore diameters resulting from this etching formulation DOE on polished wafer surfaces ranged between 10-40 nm. This is still in the mesoporous regime, but most formulations were found to yield much larger pore diameters than what is typically produced in etching standard mesoporous silicon from p+ wafers. Moreover, significant insight is gleaned from sensitivity analysis of the relationships that exist between control factors and responses.
Table 2 summarizes results of the DOE sensitivity analysis of the dependence of responses on control factors. Graphs plotting the data from which this summary was produced are shown in
Examples 2-5 describe unique etchant formulations designed to produce porous semiconductor structures of a specific morphology type.
Table 3 illustrates that to maximize pore diameter and maximize porosity while allowing the other parameters to vary within range, an optimized formulation includes about 25% ethanol, about 10-11% DMF, and about 0% glycerol, in water. This represents the maximum level of ethanol and the lowest levels of DMF and glycerol, as studied in this set of experiments.
Table 4 illustrates that to maintain a maximum pore diameter but to minimize porosity (the conditions indicative of macroporous silicon) while allowing the other parameters to vary within range, an optimized formula includes about 10% ethanol and about 10% DMF, in water, which are the lower limits of all the solvent systems studied in this set of experiments. This data teaches that lowering solvent load and viscosity are essential for maximizing pore diameter. Solvents and a high viscosity enhance pore channel nucleation, and sustained etching along multiple pathways leads to higher porosity.
Table 5 illustrates that to minimize pore diameter and maximize porosity (the conditions indicative of mesoporous silicon) while allowing the other parameters to vary within range, an optimized formula includes about 25% ethanol, about 25% DMF, and about 30% glycerol, in water, the maximum solvent concentration studied in this set of experiments. This teaches that raising the viscosity and solvent load enhances pore nucleation and the ability of numerous pore channels to sustain etch current and growth.
Table 6A illustrates that to minimize pore diameter and minimize porosity while allowing the other parameters to vary within range, an optimized formula includes about 10% ethanol, about 25% DMF, and about 5-12% DMF, in water. This result is achieved, however, at lower current densities of 10 mA/cm2. Table 6B illustrates that to achieve this morphology at higher current density (e.g., ˜30 mA/cm2) the glycerol concentration must be increased to ˜30%, the maximum studied; however, the porosity consequently increases somewhat.
The sensitivity analysis demonstrated in Examples 2-5 illustrates the complexity of the interactions between etching formulation and morphology, from which several conclusions can be drawn. To fabricate small mesoporous material (2 nm-20 nm dia., high porosity), the etchant should maximize solvent load and raise viscosity. To make large mesoporous (20 nm-50 nm) and macroporous material (low porosity, large pore diameter), the formulation should minimize solvent load and lower viscosity. To raise the porosity of large mesoporous and macroporous materials, the solvent level, particularly ethanol, should be raised. Adding DMF ensures that a positive correlation exists between porosity and current density. A summary of the effects of ethanol, glycerol, and DMF on n+ silicon (0.1-0.2 ohm-cm) microcavities is shown in Table 7.
Taking into consideration the DOE results and significant learning from the additional formulations investigated, an optimum formulation to achieve large meso- and macroporous silicon can be defined: 0-25% ethanol, 0-10% DMF, 10-20% HF, and 0-1% surfactant. For a given current density, larger pores are formed by lowering the HF concentration. A preferred HF concentration is 15%.
To improve the stability of pore formation and to insure sustained growth of large pore diameter to 100 nm or higher, the polished wafer surface first must be roughened. A convenient (but not sole) method to achieve this is to apply an electropolishing step prior to fabricating the porous silicon layer or multilayer structure. This phenomenon was discovered while monitoring voltages during the process of optimizing the electrochemical etch times for fabricating a λ/2 microcavity structure using etchant #17. Tables 8 and 9 illustrate the voltages (average of three independent runs) as a function of layer. Table 8 indicates the voltages used to prepare a microcavity without surface roughening. Note that the voltage for etching the first layer using a current density of 15 mA/cm2 is nearly two times larger than that required to etch the second, third, and fourth layers using an equivalent current density. Table 9 illustrates that roughening the surface with an electropolishing step prior to etching the microcavity stabilizes the voltage required to etch the first layer using a current density of 15 mA/cm2 to the voltage level recorded in subsequent layers. The origin of this effect is not well understood, but is believed to be due to dopant surface segregation, which alters the resistivity of the surface layer. Electropolishing several hundred nanometers of the polished surface removes this inhomogeneity. The quality of a typical microcavity fabricated using 10 periods in each mirror layer is illustrated in
The effect of utilizing a potassium hydroxide (KOH) solution to modify pore morphology of hydride terminated porous silicon is demonstrated in the SEM images of microcavities produced using etchant #17 shown in FIGS. 5A-D. Other basic substances can be used. Examples of solvents systems tried successfully are listed in Table 10. See Examples 10-13 and
HF concentration is a control factor of pore size. For a given current density bigger pores are produced when the HF concentration is lowered. Bigger pores are formed when the current density approaches the electropolishing limit. Raising the HF concentration increases the current density at which electropolishing occurs.
A 20% ethanol, 7.5% HF solution yielded a structure with a 50 nm average pore diameter at 60 mA/cm2. A 20% ethanol, 10% HF solution yielded a structure with a 20 nm average pore diameter at 60 mA/cm2. The electropolishing limit was exceeded at 60 mA/cm2 with a formulation of 20% ethanol, 5% HF, so pore diameter could not be measured. A preferred formulation would use 5-7.5% HF in water containing a surfactant to lower the surface tension.
The presence of organics in the etch solution help to lower surface tension-they are not needed if surfactants are used. And while both solvents and surfactants can be used to lower the surface tension, their effect on pore morphology is different. Etchant formulas containing certain organic solvents and large molecular weight surfactants can yield by-product in the electrochemical etch process, especially at high current densities, that may leave behind a surface film on the porous silicon scaffold. This behavior is akin to the formation of surface passivation layers in gas phase etch processing of semiconductors for integrated circuit fabrication. These surface films effectively passivate side walls from further etching, enabling patterning of anisotropic features with high aspect ratios. This feature can be advantageously used to alter the surface properties and reactivity of the porous silicon films. For example, the internal surfaces of porous silicon films etched using Etchant #27 (15% HF, 85% water, 0.1 gm pluronic F108 (a high molecular weight surfactant)) are coated with an organic layer that provides protection against KOH and leaves the pore channels hydrophilic right out of the etch bath. A nonionic surfactant series that varies systematically in hydrolipid balance (HLB), surface tension and molecular weight, such as the Pluronic series (e.g., F108, F38, P105, L101, and L31), provides a means to tailor pore morphology and surface passivation.
A microcavity produced from n+ silicon etched using etchant #17 is shown in
A microcavity produced from n+ silicon etched using etchant #27 at 60 mA/cm2 is shown in FIGS. 14 (top view) and 15 (side view).
Mesoporous silicon microcavities were prepared from highly doped (boron), p+<100> silicon wafers with a resistively of 0.01 Ω-cm. Devices were electrochemically etched at room temperature in a standard Teflon etch cell (P
During etching the electrolyte was mildly mixed using a manual pipe pump. High Q-factor (Δλ/λ) microcavity structures (DeLouise & Miller, “Optimization of Mesoporous Silicon Microcavities for Proteomic Sensing,” Mat. Res. Soc. Symp. Proc. 2003 Fall Meeting, A5.3 (2004), which is hereby incorporated by reference in its entirety) with nearly identical resonance frequencies were reproducibly achieved using this method. Table 12 lists the peak resonances for six mesoporous λ/2 microcavity structures etched sequentially and designed to operate at 800 nm. The data are illustrative of the process control in fabricating mesoporous structures. After etching, the microcavity samples were removed from the etch cell, rinsed with ethanol, then water, and dried under a stream of N2 gas.
KOH Modification
A dilute KOH solution made from a 7.7 mM KOH stock solution in water was employed to modify the intrinsic 3D microstructure of as-etched microcavity devices. Dilutions of 1:15 (0.5 mM) or 1:5 (1.5 mM) were made using 95% ethanol to aid pore infiltration. After KOH exposure, samples were rinsed in ethanol, then water, and dried under a stream of N2 gas.
Thermal Oxidation
Microcavities were thermally oxidized to enhance photoluminescence, to impart greater stability in biological solutions and to create hydrophilic pore channels. Dry thermal oxidation was conducted using a three zone Lindberg tube furnace at 900° C. Samples were slowly shuttled into the center zone where they were annealed for 3 minutes. The entire oxidization cycle took about 16 minutes to complete.
Glutathione-S-Transferase Enzyme Activity Assay
Glutathione-S-Transferases are a family of multifunctional enzymes found in all biological systems. They are involved in the metabolism of a broad variety of chemical substances foreign to the body such as toxic carcinogens and insecticides (Ortiz-Salmerón et al., “Thermodynamic Analysis of the Binding of Glutathione to Glutathione S-Transferase Over a Range of Temperatures,” Europ. J. Biochem. 268(15):4307 (2001), which is hereby incorporated by reference in its entirety). Glutathione-S-transferases are dimeric (25 kDa/monomer) cystolic proteins that catalyze the nucleophilic attack of the thiol group (—SH) of glutathione (GSH) to the electrophilic center of the foreign substrate (Hornby et al., “Equilibrium Folding of Dimeric Class Mu Glutathione Transferases Involves a Stable Monomeric Intermediate,” Biochem. 39(40):12336-12344 (2000), which is hereby incorporated by reference in its entirety). Standard tissue assays have been developed to probe for GST activity based on the conjugation reaction between GSH and 1-chloro 2,4-dinitrobenzene (CDNB) (Habig et al., “Glutathione S-Transferases. The First Enzymatic Step in Mercapturic Acid Formation,” J. Biol. Chem. 249(22):7130-7139 (1974), which is hereby incorporated by reference in its entirety). The product of this reaction is monitored spectrophotometrically by measuring absorbance at 340 nm. This assay has been adapted to probe the effects of KOH exposure on microstructure of mesoporous microcavities as described in Examples 12-13.
Materials
GST (G6511 from equine liver 40 U specific activity), CDNB (C6396) and reduced GSH (G6529) were all were purchased from Sigma and used without further purification. All solutions were made fresh each day prior to use. Biological solutions were mixed using PBE buffer containing 100 mM potassium phosphate monobasic buffer with 1.0 mM EDTA at pH 6.5. Stock solutions of 20 mM GSH and 2 mg/ml GST were prepared in PBE and a stock solution of 100 mM CDNB was prepared in ethanol.
Solution Enzyme Reaction
Solution phase enzyme reactions were conducted prior to the immobilized solid phase reactions on microcavity chips to validate the experimental protocols and gain familiarity with enzyme kinetics. Absorbance versus time measurements were made by introducing 25 μl of GST solution (0.01-1.0 mg/ml) to a reaction tube containing (0.25-2.5 mM) GSH and 2.5 mM CDNB. Solution reactions were conducted with a total solution volume of either 75 μl or 600 μl, the former being used to more closely parallel the solid phase microcavity reactions described in Examples 12-13. Absorbance versus time was typically monitored for up to 5-10 minutes and could be quantitatively related to concentration using the molar excitation coefficient for the conjugation product, ε=9600 (μM-cm)-1. Enzyme activity was determined from the linear portion of the absorbance change with time (<3 min). Specific activity was normalized to the number of milligrams of GST utilized and found to be in good agreement with the vendor specification. Enzyme efficiency was best achieved utilizing low enzyme (<10 nM) with millimolar substrate concentrations.
Solid Phase Microcavity Enzyme Reaction
Solid phase enzyme reactions were carried out by derivatizing the microcavity chip with covalently bonded GST. The three microcavity chips referred to in Example 13 were electrochemically etched according to an equivalent procedure. Two were subsequently exposed to 1.5 mM KOH for 2 and 10 minutes, respectively. All three microcavity devices were oxidized and then derivatized with an acidified 2% aqueous glycidyl epoxy silane solution (VWR AA-30504) containing methanol for 15 minutes. The devices were rinsed with methanol, then water, dried under a stream of N2, and baked at 100° C. for 15 minutes. The microcavity chips were next exposed to 40 μl of 5 mg/ml (˜100 nM) GST for 1 hour, after which the residual GST solution was pipetted off the surface before washing with buffer. Prior to conducting the solid phase immobilized enzyme reaction, the microcavity chip was soaked in buffer for ≧30 minutes to allow nonspecifically bound GST to desorb from the pores.
The enzyme reaction was conducted by pipetting 50 μl of ligand stock solution containing 2 mM GSH and 2 mM CDNB onto the device surface. The conjugation reaction was allowed to proceed for 5 minutes, after which 40 μl of solution was recovered from the chip surface, diluted with 560 μl PBE, and the absorbance at 340 nm recorded. Residual ligand stock solution was washed from the microcavity chip with buffer and the device allowed to soak in PBE for ≧10 minutes before running another enzyme reaction. Absorbance measurements were recorded for 5 independent chip reactions using fresh ligand stock solution and the average absorbance value reported. The linearity of the immobilized enzyme activity extends far beyond 5 minutes (DeLouise & Miller, “Enzyme Immobilization in Porous Silicon Biochip—Quantitative Analysis of the Kinetic Parameters for Glutathione-S-transferases,” Anal. Chem. 77(7): 1950-1956 (2005), which is hereby incorporated by reference in its entirety). As such, it was concluded that the magnitude of absorbance at 340 nm is proportional to the amount of functional immobilized enzyme.
Microcavity Optical Characterization
Optical characteristics were checked before and after all microcavity fabrication and surface derivatization steps by both white light reflection and photoluminescence using an Ocean Optics HR2000 system. Photoluminescence was stimulated using a fiber optic coupled 25 mW diode pumped laser at 532 nm. Prior to inserting the microcavity into the optical reader the device was dried under a stream of N2. Optical measurements to determine the impact of GST immobilization were delayed until after conducting the GSH-CDNB conjugation reaction to preserve enzyme activity (DeLouise & Miller, “Enzyme Immobilization in Porous Silicon Biochip—Quantitative Analysis of the Kinetic Parameters for Glutathione-S-transferases,” Anal. Chem. 77(7):1950-1956 (2005), which is hereby incorporated by reference in its entirety).
The biosensor development efforts discussed in Example 10 focus mainly around p+ mesoporous silicon resonant microcavity devices because of the convenience of etching, the greater control over porosity with current density and the resulting high interface quality compared to n-doped material. Microcavity devices are often preferred over interferometric single layer and mirror structures (Anderson et al., “Sensitivity of the Optical Properties of Porous Silicon Layers to the Refractive Index of Liquid in the Pores,” Phys. Stat. Sol. (a) 197(2):528-533 (2003); Lin et al., “A Porous Silicon-based Optical Interferometric Biosensor,” Science 278:840-843 (1997); Collins et al., “Determining Protein Size Using an Electrochemically Machined Pore Gradient in Silicon,” Adv. Func. Mat. 12:187-191 (2002), which are hereby incorporated by reference in their entirety) because they can be designed to exhibit characteristic resonance peaks in the optical response from which changes in the optical path length (ηd) induced by a molecular binding event can be unambiguously monitored. Mesoporous microcavities also offer the option to measure the sensor response in reflection or photoluminescence (PL). The resonant characteristic of the microcavity device reinforces sensor response yielding narrow line widths such that 0.5-1 nm shifts are reliably resolved. A SEM image of the cross-section of a typical microcavity device and the optical response in both reflection and photoluminescence are illustrated in
An advantage to monitoring shifts in the resonant peaks as the primary sensor response is that the magnitude of the shift is a linear function of % pore filling. A computer simulation using the Bruggeman effective medium approximation (Bruggeman, “Berechnung Verschiedener Physikalischer Konstanten von Heterogenen Substanzen,” Ann. Phys. 24:636-679 (1935), which is hereby incorporated by reference in its entirety) was conducted to investigate the effect of filling the pores with water (η=1.33) on the reflectivity spectrum of a λ/2 microcavity. Results show that as the optical thickness increases the resonant peak of a microcavity undergoes a red shift.
Another advantage of mesoporous silicon is the high surface area (>100 m2/cm3). In addition to being able to immobilize a high concentration of probe in a biosensor application, mesoporous devices are anticipated to offer an inherent sensitivity advantage in responding to subtle alterations in porosity induced by monolayer surface modifications.
Despite the advantages of mesoporous devices discussed, there are limitations. Most notable is pore diameter. The pore diameter of a typical device ranging between 20-30 nm may restrict pore infiltration and slow diffusion of large biomolecules (>30-50 kDa). Pore diameter is believed to be linked to the root cause of an observed high level (˜50%) of sensor false negatives in preliminary efforts to develop a proteomic sensor prototype to detect the enteropathogenic and enterohemorrhagic strains of E. coli. The influence of surface energy on pore infiltration is also a concern. A decrease in the wetting characteristic of microcavity devices following surface derivatization with large proteins has been observed. This phenomenon is being investigated more thoroughly; however, preliminary observations suggest that hydrophobic interactions in addition to pore diameter play a significant role in pore infiltration.
Therefore, in attempting to develop versatile mesoporous microcavity devices for biosensor applications it is desirable to exploit available design parameters and to develop fabrication options. Example 13 discusses key design parameters including oxidation, current dependent porosity, the number of mirror periods, and post-etch KOH processing, to fabricate microcavities tuned to operate in the visible spectrum where the photoluminescence intensity is maximum.
Oxidation of mesoporous devices is a useful step in the design of microcavity biosensors. First, as discussed in Example 12, oxidizing the mesoporous silicon devices aids in creating hydrophilic surfaces to facilitate pore infiltration and subsequent surface derivatization chemistry. Second, the oxide helps to stabilize the sensor against premature corrosion in biological solutions containing high levels of salt. As-etched hydride-terminated mesoporous silicon will dissolve completely in a matter of hours while soaking in typical buffer (PBS and HEPES) solutions and even sterile solutions containing only biological levels of sodium chloride. This observation is consistent with previous reports of high porosity mesoporous silicon degradation in biological fluids (Canham et al., “Derivatized Porous Silicon Mirrors: Implantable Optical Components with Slow Resorbability,” Phys. Stat. Sol. (a) 182:521 (2000); Anderson et al., “Dissolution of Different Forms of Partially Porous Silicon Wafers Under Simulated Physiological Conditions,” Phys. Stat. Sol. (a) 197(2):331-335 (2003); Canham et al., “Derivatized Mesoporous Silicon With Dramatically Improved Stability in Simulated Human Blood Plasma,” Adv. Mat. 11:1505 (1999); Buriak & Allen, “Lewis Acid Mediated Functionalization of Porous Silicon with Substituted Alkenes and Alkynes,” J. Am. Chem. Soc. 120:1339 (1998); Stewart et al., “Three Methods for Stabilization and Functionalization of Porous Silicon Surfaces via Hydrosilylation and Electrografting Reactions,” Phys. Stat. Sol. (a) 182(1): 109-115 (2000), which are hereby incorporated by reference in their entirety), suggesting that salt is particularly corrosive. Finally, oxidation is used to enhance and stabilize the photoluminescent properties of the mesoporous silicon (Vinegoni et al., “Porous Silicon Microcavities,” in 2 S
It is well known that the resonance frequencies of a microcavity device undergo a blue shift upon oxidation (Vinegoni et al., “Porous Silicon Microcavities,” in 2 S
In addition to the optical blue shift, oxidation also causes a slight reduction in % reflection and microcavity quality as measured by the Q factor (Q=Δλ/λ). The magnitude of the degradation again depends on the porosity difference between mirror layers.
Number of Mirror Periods
To counter the deleterious effect of oxidation, the number of mirror periods can be increased.
Pore Diameter Modification
A clear shortcoming of mesoporous silicon for biosensor applications is the smaller than desired pore diameter. In etching p+ silicon, increasing the current density is more effective at increasing porosity than pore diameter. A SEM view of a typical microcavity surface, shown in
Photoluminescence data from KOH treated mesoporous microcavities also indicates that KOH etching is a two step mechanism.
GST Chip Reactions
To further assess the effect of KOH treatment on porosity and pore diameter, a comparative study of the GST enzyme conjugation reaction was conducted on three λ/2 microcavity chips fabricated with 10 periods per mirror using 20/70 mA/cm2. One sample was exposed to 1.5 mM KOH for 2 minutes (0.18 M-sec, fast etch regime, −18 nm blue shift), and a second sample for 10 minutes (0.92 M-sec, slower etch regime, −45 nm blue shift). A third chip served as a control (no KOH). Samples were oxidized and derivatized with epoxy silane prior to GST immobilization. Details of the GST chip reaction and a comparison of the solid state kinetics to solution phase activity are reported in Example 11.
The pore diameter in microcavities, where one of the layers in the periodic mirror stack is etched at 20 mA/cm2, is insufficient to allow facile penetration of the GST enzyme (50 kDa) (DeLouise & Miller, “Optimization of Mesoporous Silicon Microcavities for Proteomic Sensing,” Mat. Res. Soc. Symp. Proc. 2003 Fall Meeting, A5.3 (2004), which is hereby incorporated by reference in its entirety). After immobilizing 50 μl of GST solution (5 mg/ml, ˜5 nmol) onto the three microcavities, the GSH-CDNB conjugation reaction was allowed to proceed for 5 minutes.
Further insight into these results was gained from the optical response of microcavity chips measured after completing the GSH-CDNB reaction. The optical shift data are illustrated in
Summary
The advantages and design considerations of utilizing p+ mesoporous silicon microcavities in optical biosensing applications has been discussed. This is an attractive technology because the fabrication methods are inexpensive and sufficiently flexible such that devices can be reproducibly made. The device fabrication parameters can be sufficiently controlled to enable the tailoring of the device microstructure and quality (Q-factor) to overcome some of the limitations of pore infiltration. Specifically it has been established that a dilute KOH solution is an effective means to systematically modify the pore structure in mesoporous devices to enable the ingress of larger biomolecules (˜50 kDa). A consequence of this treatment, however, is that the high surface area nanostructures responsible for giving rise to efficient photoluminescence are readily removed. As such, KOH treated sensors can be operated in reflection mode only.
Although preferred embodiments have been depicted and described in detail herein, it will be apparent to those skilled in the relevant art that various modifications, additions, substitutions, and the like can be made without departing from the spirit of the invention and these are therefore considered to be within the scope of the invention as defined in the claims which follow.
This application claims the benefit of U.S. Provisional Patent Application Ser. No. 60/673,108, filed Apr. 20, 2005, which is hereby incorporated by reference in its entirety.
Number | Date | Country | |
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60673108 | Apr 2005 | US |