Information
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Patent Application
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20030235819
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Publication Number
20030235819
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Date Filed
October 22, 200123 years ago
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Date Published
December 25, 200321 years ago
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Inventors
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Original Assignees
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CPC
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US Classifications
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International Classifications
Abstract
Mutations resulting in stop codons in the BRCA1 gene are described. All of these mutations result in the formation of a truncated BRCA1 protein. Methods for identifying a sequence variation in a BRCA1 polynucleotide sequence are disclosed. The identification process includes allele specific sequence-based assays of known sequence variations. The methods can be used for efficient, and accurate detection of a mutation in a test BRCA1 gene sample for diagnostic and therapeutic purposes.
Description
FIELD OF THE INVENTION
[0001] This invention relates to the cancer suppressor gene BRCA1. More specifically, this invention detects germline mutations of the BRCA1 gene that are associated with breast and ovarian cancer, and somatic cell mutations of the BRCA1 gene indicating the nature of the cancer. Methods and reagents for detecting the presence of these mutations are included.
COPYRIGHT NOTICE
[0002] A portion of the disclosure of this patent document contains material which is subject to copyright protection. The copyright owner has no objection to the facsimile reproduction by anyone of the patent document or the patent disclosure as it appears in the U.S. Patent and Trademark Office patent file or records, but otherwise reserves all copyright rights whatsoever.
BACKGROUND OF THE INVENTION
[0003] BRCA1 is a putative tumor suppressor gene located on chromosome 17. Mutations in the BRCA1 gene are thought to account for roughly 45% of inherited breast cancer and 80-90% of families with increased risk of early onset breast and ovarian cancer (Easton, 1993, et al., American Journal of Human Genetics 52; 678-701). A compilation of the known BRCA1 mutations may be found at the Breast Cancer Information Core world wide web site at http:/Hwww.nhgri.nih.gov/Intramural_research/Lab_transfer/Bic/(BIC) (Friend, S. et al., 1995, Nature Genetics 11: 238). The BRCA1 gene is approximately 100,000 base pairs of genomic DNA encoding the 1836 amino acid BRCA1 protein. The sequence is divided into 24 separate exons. Exons 1 and 4 are noncoding, in that they are not part of the final functional BRCA1 protein product. Each exon consists of 200-400 bp, except for exon 11 which contains about 3600 bp (Weber, B., Science & Medicine (1996). A consensus sequence for the coding region of the human BRCA1 gene, referred to herein as BRCA1 (omi1), was first disclosed in application Ser. No. 08/598,591 (as SEQ ID NO:1, therein), herein incorporated by reference.
[0004] Accuracy in detecting mutations in BRCA1 is extremely important, particularly in clinical settings. Direct end-to-end sequencing of the gene potentially provides the most reliable results, given that an accurate reference sequence is available. However, direct sequencing is a cumbersome technique. Detection of one of many known or unknown mutations is further complicated when the gene is large and/or has a complex structure. The human BRCA1 gene, for example, is approximately 100,000 base pairs long and contains 24 exons (Weber, B., Science and Medicine, Scientific American January-February 1996, 12-21). Furthermore, in order to be practical and available to the general population, mutation detection methods must be efficient enough to accommodate a large number of different samples.
[0005] A number of techniques that are more rapid but less comprehensive than direct sequencing have been developed for detecting nucleotide sequence variations. These techniques may be used to detect differences between normal and mutant nucleotide sequences. DNA sequence-based allelic discrimination methods include: (1) allele-specific hybridization techniques, which effect detection under high stringent hybridization conditions; (2) single strand conformation polymorphism analysis and heteroduplex analysis which exploit differences in secondary structure of nucleic acid molecules; (3) denaturing gradient gel electrophoresis and constant denaturing gel electrophoresis which detect different alleles based on differences in melting behavior of nucleic acid molecules; (4) restriction enzyme cleavage, which discriminates between alleles based on the presence of absence of corresponding restriction recognition sequences; and (5) chemical or nuclease cleavage which detect base mismatch loci. Other techniques, such as the protein truncation test (Hogervorst F. B., et al., Nat. Genet. June 1995; 10(2):208-212), detect changes in the protein transcripts. For a summary of such techniques, see Marajver & Petty, 1996, Clinics in Lab. Med. 16: 139-167, especially Table 5 at p. 152.
[0006] One limitation of all these techniques is that sequence variations are often of unknown clinical significance. Since the triplet code is degenerate, many genetic variants do not alter the amino acid sequence of the resultant protein. Even those sequence alterations that do result in amino acid changes may not have a significant impact on protein function. For example, some amino acid changes will substitute functionally similar amino acids (conservative substitutions) such as one small neutrally charged amino acid for another. Further, some regions of a protein molecule may not be important for protein function. In those regions of the molecule, even large changes the amino acid sequence may be possible. Thus, genetic variants as a whole are often of unknown clinical significance.
[0007] If an altered sequence in the coding region of a gene associated with a condition such as cancer is found however, it is important to determine the clinical significance of the variant sequence. Knowing the significance of the sequence variation can be an invaluable tool in determining an appropriate treatment or monitoring regimen. For example, if an individual carries a mutation that interferes with protein function, it may be possible to provide the individual with increased expression of the gene through gene transfer therapy. It has been demonstrated that the gene transfer of the BRCA1 coding sequence into human cancer cells inhibits their growth and reduces tumorigenesis in nude mice. The BRCA1 protein product appears to be a secreted tumor growth inhibitor, making BRCA1 an ideal gene for gene therapy studies. Transduction of only a moderate percentage of tumor cells apparently produces enough growth inhibitor to inhibit all tumor cells. Arteaga, C. L., and J. T. Holt Cancer Research 56: 1098-1103 (1996); Holt, J. T. et al., Nature Genetics 12: 298-302 (1996). The observation of Holt et al. that the BRCA1 growth inhibitor is a secreted protein, also suggests the possibility of tumor suppression by injecting the growth irhibitor into the area of the tumor.
[0008] Efforts have independently focused on increasing the efficiency of DNA sequence analyses and increasing the comprehensiveness of the sequence-based techniques. There remains a need, however, for a comprehensive method of detecting mutations in individual gene samples that is both accurate enough to provide a reliable diagnosis to an individual patient and efficient enough to be practical for application to the general population.
[0009] Until now, the art has relied upon the occasional occurrence of a previously unreported mutation to increase its base of information for mutation testing in a given gene sequence. To determine the presence or absence of a mutation in a gene from a patient sample, the vast majority of test samples would be subject to complete end-to-end sequencing of the gene. This method is time consuming, often taking six weeks to obtain a result, and is extremely expensive. To ascertain the clinical significance of a previously unidentified sequence variation, those in the art would frequently rely on epidemiological data derived from an analysis of families or populations carrying the newly identified mutation. Other methods of assessing the significance of a newly identified sequence variation would include cloning the altered gene and studying its function in vitro or in vivo or comparing the altered gene sequence with homologous genes in other organisms. Given the realities of many of these genetic diseases, such an analysis comes too late to be of use to the individual bearing the newly identified sequence variation.
[0010] There is need in the art, therefore, for improved methods to identify clinically significant mutations. Identification of mutations of the BRCA1 gene would allow better tumor cell analysis for more appropriate therapy, and more widespread diagnostic screening for hereditary cancers than is currently possible, and also permit identification of critical or biologically significant functional areas deduced from the mutational spectrum observed. While mutations occur throughout the BRCA1 gene, there is a need for an assay, test or means for detecting mutations with a high sample number (throughput), sensitivity, accuracy and cost effectiveness.
[0011] The present invention addresses these needs and more by providing mutations, molecules, and methods useful for the identification of both known and unknown mutations.
SUMMARY OF THE INVENTION
[0012] It is an object of the invention to provide a method for determining a predisposition or higher susceptibility to cancers in individuals by determining the DNA sequence of the BRCA1 genes in the DNA of a patient specimen and comparing it to a naturally occurring (wild type) BRCA1 gene sequence or any haplotype thereof resulting from polymorphisms to determine whether the sample contains a mutation.
[0013] It is a further object of the invention to provide a method of characterizing and classifying a tumor and determining an appropriate therapy dependant upon the type of BRCA1 mutation(s) present.
[0014] It is also an object of the present invention to provide a non-chromosomal mutant BRCA1 gene and expressed mutant protein for drug development, gene therapy and other uses to prevent or ameliorate the effects of or resulting from the mutant BRCA1 gene.
[0015] It is another object of the present invention to prepare oligonucleotides, or groups of these oligonucleotides, where the oligonucleotide will specifically hybridize to either the wild type BRCA1 gene or a mutant BRCA1 gene to distinguish between the two BRCA1 genes.
[0016] It is still another object of the present invention to assay for the presence of a BRCA1 gene encoding a truncated BRCA1 protein by testing for the presence of a truncated BRCA1 protein.
[0017] The present invention is based on the discovery of numerous mutations in the published BRCA1 DNA sequence that result in a truncation of the BRCA1 protein. Mutations in the BRCA1 gene that cause truncations are associated with increased susceptibility to, and developmental stage of, different cancers, particularly breast and ovarian cancer. A truncated protein is likely to be non-functional or at least have a different biological activity.
DETAILED DESCRIPTION OF THE INVENTION
[0018] The present invention stems, in part, from the realization that previously unidentified sequence variations as a whole are typically of unknown clinical significance. At this time, epidemiological studies are time-consuming and may be of little use for infrequently identified sequence variations; laboratory studies of protein function are similarly time-consuming and difficult to extrapolate to human disease. However, mutations resulting in a prematurely terminated protein have a high probability of having clinical significance. In part, this is due to the fact that a premature termination of a coding sequence may entirely delete important functional domains, such as zinc fingers, transmembrane domains, phosphorylation sites, glycosylation sites, etc. It is also due, in part, to the fact that the removal of a portion of a protein molecule can significantly disrupt a protein's structure and function, even where no obvious functional domain has been deleted. Thus, the larger the truncation, the greater the likelihood that an important part of the molecule has been removed. Regardless of the cause, a survey of known clinically significant sequence variations (mutations) of the BRCA1 gene reveals that a large percentage of identified mutations are premature truncation mutations of the BRCA1 protein product. Thus, identifying those sequence variations that are premature truncation-causing mutations offers enormous predictive value to the clinician.
[0019] The presence of tumor cells with a mutation that inactivates BRCA1 may be clinically significant in determining the tumor stage, likelihood of metastasis, appropriate therapy etc. BRCA1 mutations appear in advanced tumors, several advanced primary cancers and cell lines derived from highly aggressive cancers. Individuals with one of their alleles having a BRCA1 mutation in their germline are at increased susceptibility for cancer, particularly breast and ovarian cancer.
[0020] With DNA sequencing technology, genomic DNA has been extracted from samples of whole blood, a cell line or a tumor and the coding regions of the BRCA1 gene were amplified using the polymerase chain reaction (PCR). Each of the coding regions has been sequenced completely and is recited in GENBANK, Accession Number 159546.
[0021] A number of mutations have been described in the BRCA1 gene that cause stop codons to be formed, thereby encoding a truncated BRCA1 protein. A list of mutations published to date is in TABLE 1.
[0022] The nomenclature of the published literature is inconsistent. See, for example, Beaudet et al, Human Mutations, 2: 245-248 (1993), Antonarakis et al, Human Mutations, 4: 166 (1994), Cotton, Human Mutations, 8: 197-202 (1996), and Beutler et al., Human Mutations, 8: 203-206 (1996). Consequently, the following nomenclature is used to define the mutations and polymorphisms of the present invention. In defining the mutation, the number indicates the nucleotide number corresponding to the BRCA1 gene sequence where the mutation first occurs. For simplified identification purposes, the BRCA1 sequence of SEQ ID NO:1, of U.S. Pat. No. 5,654,155 (GENBANK Accession number 159546) is used. However, the invention is equally applicable to other BRCA1 sequences. Other BRCA1 sequences (haplotypes) that are polymorphisms or genetic variations of BRCA1 may be used, in which case, a corresponding mutation at the corresponding nucleotide number is present.
[0023] Haplotypes are distinguished based on the combination of nucleotides present at particular polymorphic loci. Polymorphic nucleotide sites 2201, 2430, 2731, 3232, 3667, 4427, and 4956 usually define a haplotype. Other polymorphic sites of a BRCA1 gene are at Exon 4 (not coding) 49, IVS8-57, 1186, 2196, and 3238. Less common polymorphisms are at 233G>A, 561-34C>T, exon 9-6delT, 710C>T, 1100A>G, 1985G>T, 2202G>A, 2687T>C, 2933A>G, 3263T>C, 4077T>C, 4145A>G, 4193G>A, 4209-141C>A, 4364A>G, 4932T>C, 5106-68G>A, 5106-92G>A, intronic exon17-G>A, 5232G>T, 5272+66A>G, intronic exon18+A>G, 5396+48 12bp insert, 5396+4712bp insert, intronic exon 22+T>C, 5651C>T, 5657G>A, and UGA+36C>G. See, Couch et al., Human Mutations, 8(1):8-18 (1996), where polymorphisms have been reported.
[0024] As the BRCA1 gene numbering does not include introns, when the mutation is located within an intron, a nucleotide in the coding sequence +or − a number of nucleotides is given. Insertion mutations are indicated by “ins” and deletion mutations are indicated by “del”. Letters after “ins” or “del” refer to the nucleotide(s) which were inserted or deleted. Alternatively, where several bases have been inserted or deleted, a number may follow “ins” or “del,” indicating the number of affected bases. When the mutation results in one nucleotide being substituted for another, the original nucleotide(s) is placed to the left of the nucleotide number and the nucleotide(s) corresponding to the substituting nucleotide is placed to the right of the nucleotide number. In some cases, the substitution is indicated by both the original and the substituted nucleotides following the nucleotide number, with an “>” between them. In such cases the original nucleotide is to the left of the “>” and the substituted nucleotide is to the right of the “>,” as for example, in the designation 5657G>A.
TABLE 1
[0025] 185delAG, 185insA, 188del11, 189insA, 189insTGTC, 192del2, 259insT, 351delA, 448insA, 448delAG, 525insA, 589delCT, 613insT, 633delC, 787insA, 788delA, 794delT, 795delT, 816delGT, 916delTT, 917delTT, 926ins11, 962del4, 1048delA, 1049delG, 1099delCA, 1100delAT, 1103insC, 1129delA, 1135insA, 1191delC, 1201del11, 1205delGA, 1206delA, 1220insC, 1240delC, 1294del40, 1323delG, 1374delG, 138del29, 1395delT, 1406insA, 1411insT, 1438delT, 1459insG, 1479delAG, 1499insA, 1505delG, 1506delA, 1509delA, 1511insC, 151insC, 1559insA, 1611delC, 1623del5, 1670delT, 1675delA, 1701del7, 1768delA, 1832delS, 1942del4, 1996ins4, 2000del4, 2012insT, 2071insA, 2072del4, 2072insG, 2080delA, 2080delA, 2080insA, 2138delA, 2140delC, 2187delA, 2190delA, 2198delCA, 2229delAA, 2274insA, 2294delG, 2295delC, 2307insG, 2312del5, 2313del5, 2314del5, 231delAA, 2325delG, 2329delC, 2329delCA, 2334insCT, 2388delG, 2401delAA, 2415delAG, 2448delT, 2473insA, 2509delAA, 2569delG, 2575delC, 2576delC, 2594delC, 2594insA, 2595delA, 2596delC, 2711delA, 2731insT, 2765delTGC, 2795del4, 2798del4, 2800delAA, 2804delAA, 2809insA, 2819delTT, 2844del4, 2846delTCAA, 2862delTC, 2867insA, 2883del4, 2911delTGGT, 2925del4, 2953delGTA>insC, 2953insCdelGTA, 2954insT, 2982del5, 3039delTT, 3109insAA, 3121 delA, 3124delA, 3135del4, 3166ins5, 3172ins5, 3345delAG, 3345delAG, 3375insGA, 339insA, 3407delAA, 3411delCT, 3449insA, 3450del4, 3476delT, 3596del4, 3599dell, 3600del11, 3604delA, 3668delAGinsT, 3731delA, 3768insA, 3818delA, 3819del5, 3825del8, 3829delT, 3874del4, 3875del4, 3879insT, 3879insT, 3883insA, 3889delAG, 3890delGG, 3896delT, 3938insG, 3960delCA, 3977del4, 3988delAA, 4035delTT, 4050del4, 4091delG, 4154delA, 4184del4, 4239delAG, 4280delTC, 4284delAG, 4601delAA, 4693delAA, 5055delG, 5061delA, 5083del19, 5085del19, 5085del19, 5124delG, 5124delG, 5145del11, 5145del11, 5149del4, 5149del4, 5154del5, 5154del5, 5245delG, 5256delG, 5296del4, 5348delAA, 5382insC, 5389del7, 5404insG, 5438insC, 5439delAA, 5502insT, 5559delG, 5598insGA, 5629delG, 5640delA, 5677insA, A1518T, A2154T, C1599T, C1648G,. C1695T, C1740T, C1806T, C2257G, C2428A, C2457T, C297T, C3042T, C3508G, C3549T, C3726T, C3726T, C3726T, C3726T, C3837T, C3904A, C3960T, C3960T, C3960T, C4086T, C4302T, C4305T, C4341T, C4377T, C4446T, C4808G, C4929T, C5370T, C5622T, C624T, G1081A, G1177A, G1235A, G1371T, G1569T, G2307T, G2508T, G2841T, G3297T, G3759T, G3780T, G3867T, G4740T, G5199T, G5273A, G5292T, G5465A, G546T, G5563A, G5625T, G5630A, IVS12-1643del3835, IVS12-1643del3835, T1411G, T2035A, T3053G, T3358A, T3376G, T3458G, T5298A.
[0026] It should be noted that polymorphisms in the coding sequence are known and listed in TABE 2. An example is A180G. In the non-coding regions, a deleted T, 2 base pairs beyond exon 19 (5312+2delT) and a 12 base pair insertion 47 bases beyond exon 20 (5396+47ins12bp) are also known polymorphisms. Other genetic changes which may be polymorphisms or mutations are listed under mutations above. While the present invention references the sequences recited above, it is recognized that polymorphisms, either these recited or others, may be equally used for the purposes of the present invention.
TABLE 2
[0027] del exon 3, del561-702, del561-789, exon 18 delA, 5312+2delT, codong 1749 Pro to Arg, IVS20ins12, dup5396+48, A1100G, G1112C, C1120T, A1186G, A1186G, A120G, M11, D369del, T1256G, G1503A, T151C, A1546G, T1575C, C1605T, G1606A, G1630A, G1639T, T172C, C1735T, A1767C, A180G, 5544delGTT, C1822T, T1831C, T189C, G1985T, exon 9-2A>C, C2053A, G2093C, C212G, C2121T, G2196A, C2198T, C2201T, G2202A, A2286G, C2299T, G233A, G233A, A243G, T2430C, T2434C, G2531C, A2577G, C2596A, C2596A, C2640T, A2646G, T2687C, C2715T, C2731T, C2731T, C2731T, A2933G, T300G, C3030A, T309G, G310A, G310A, G3143A, A3165G, G3202A, A3232G, A3233G, G3238A, G3238A, T3263C, A330G, In6(+3)A>G, A3339G, C3415T, A3446G, T3529C, A3537G, G3543C, C3547T, C3567T, C3567T, A3667G, C3706A, G3720A, G3727A, G3776C, T378G, C3832T, G3867A, T388C, T4077C, A4145G, G4155A, A4158G, G4193A, 4209-141C>A, G4303A, A433G, G4364A, C4380T, C4427T, C4446G, Exon12+6,T>C, G4603T, G4654T, G4719A, G4755A, G5396+48ins12bp, C4801T, C480T, IVS7-3delT, C49T, A4931G, T4932C, A4935G, C4942T, A4956T, A4956G, A5001G, T5002C, T5002C, C5029T, G5040A, G5075A, G5076A, G5112A, G5112A, V1688del, V1688del, G5193A, G5193A, 5194-2A>C, C5214T, G5215A, C5232T, C5242A, C5242A, T5257C, G5263A, IVS18+1G>T, 5272+66A>G, I-18 5272+66G>A, 5272+66G>A, A5277G, 5280delCAG, A5317G, G5332A, A5335G, G5396A, 5396+1 G>A, G5396+1A, 5396+47ins12bp, T5443G, G546A, T5467C, G5482T, T5530A, C5535G, T5542C, T5548G, A5575G, G5586A, 561-34 C>T, G5616A, T5628C, C5651T, 5657G>A, A655G, C676A, G690A, C710T, C710T, G731C, T855G, G876A, G930A, G930C, exon 2-3insAG , IVS20+60ins12, Intron22T>C, T>G ins59bp, exon 9-6delT, G5396+47ins12bp, in18+1G>C, in20-1(G>T), IVS11-2delGT, IVS20ins12, IVS22+5G.A, IVS1-21insAT, IVS11-2A>G, IVS13+1G>T, IVS13+2T>G, IVS13-10C>T, IVS14-2A>G, IVS15+1G>A, IVS16+3G>C, IVS16+6T>C, IVS16-20A>G, IVS16-20A>G, IVS18+6T>G, IVS18-13A>G, IVS2+1G>A, IVS2+IG>T, IVS2-1 delT, IVS2-12C>G, IVS20+60ins12, IVS20-1G>A, IVS22+8T>C, IVS23-10C>A, IVS4-IG>T, IVS5+1G>T, IVS5-11T>G, IVS5-12A>G, IVS6+7G>A, IVS6-2A>T, IVS6-2delA, IVS7-3delT, IVS8+2T>A, IVS8-17G>T, IVS9+3G>A, exon24(+36)C>G, 3′UTR C>G (+36).
[0028] It should be noted that not all of the mutations listed in TABLES 1 and 2 are prior art as some of the mutations were published very recently after applicant determined his mutations.
[0029] Mutations detected according to the present invention are nonsense and frame shift mutations. Nonsense mutations cause an in-frame stop codon, which results in expression of a to truncated protein of presumably no BRCA1 functional ability or at least a significantly altered BRCA1 biological activity. Frameshift mutations cause an out-of-frame stop codon to be created in the inserted or deleted coding sequence. This formed stop codon may be at the site of mutation or downstream from the mutation. For the example of nonsense mutations, a nucleotide in a codon is mutated to provide a stop codon having a sequence of TAA, TAG or TGA. For the example of a frame shift mutation, 1, 2, 4, 5, or any larger integer not 3 or a multiple of three, nucleotides are inserted into, or deleted from, the BRCA1 gene sequence. Such mutations result in the formation of a stop codon at the codon containing the mutation or within codons downstream from the mutation site, but before the end of the wild type BRCA1 gene.
[0030] The presence of one or more of such mutations is expected to be clinically significant as they are capable of producing a truncating BRCA1 mutation. As the effects of truncations are predictably harmful, one has a high degree of certainty that the presence of such a mutation is clinically significant.
[0031] For example, truncating mutations 5382insC, 5438insC, and 185delAG are known to be associated with cancer (Abeliovich, et al., Am. J. Hum. Genet., 60:505-514 (1997); Struewing et al., Nat. Genetics, 11:198-200 (1995); Shattuck-Eidens, et al., JAMA 273(7):535-541 (1995). Accordingly, any truncating mutation deleting the same portion or more of the coding sequence is presumed to produce an affected mutant BRCA1 protein and to be associated with cancer or an increased susceptibility to cancer. 5382insC and 5438insC cause frame shifts, producing a stop codon (TGA) at nucleotides 5604-5606. 185delAG causes a frame shift, producing a stop codon (TGA) at nucleotides 234-236. Therefore, for the purposes of the present invention, truncating mutations at this location of a lower nucleotide number are presumed to be harmful or of clinical significance.
[0032] Conversely, the clinical significance of many missense mutations is unclear. Even when isolated from a tumor cell, the exact effect on BRCA1 protein must be independently shown. Theoretically, most variations in the BRCA1 sequence will be missense variations and relatively AD fewer will be truncating mutations. At the present time, the rules are unknown for which missense mutations in BRCA1 are predictably harmful or otherwise clinically significant. The BRCA1 gene is simply not sufficiently characterized, and given the history of mutations in other genes and computer programs attempting to find predictability, missense mutations will continue to be unpredictable. Without a certainty of their clinical significance, simply knowing that a missense variation exists may have no value.
[0033] In general, truncated proteins are non-functional or of reduced function by lacking proper biological activity. The presence of a BRCA1 gene encoding a truncated protein has a high probably of being clinically significant. This is in part due to important portions of the BRCA1 protein being located in the truncated region and not present in the expressed mutant protein. Important functional domains include, for example, any part of the active site, transmembrane domains, zinc fingers, phosphorylation sites, glycosylation sites, sites interacting with metal ions, coenzymes, cofactors, other ligands or receptors, etc. Furthermore, removal of part of the protein molecule or addition of amino acids to the sequence can significantly disrupt the secondary, tertiary or quaternary (if any) structure of the protein, even when no obvious functional domain has been deleted by the truncation.
[0034] For example, the 5382insC mutation is found in breast and ovarian cancers. This single base insertion creates a stop-codon at codon 1829, truncating the protein at a cysteine residue. This truncation deletes less than 2 percent of the coding sequence of BRCA1 . Accordingly, all truncations that delete this region of the BRCA1 gene would also by inference render the truncated BRCA1 protein non-functional for its putative tumor suppressor function. Mutant BRCA1 genes with even smaller portions of the gene being truncated are also known to be associated with cancer. For example, truncating mutations causing a stop codon at nucleotides 5676-5678, truncating 0.5% of the coding sequence, are also known to be associated with breast cancer (5677insA; Shattuck-Eidens et al., JAMA, 273(7):535-541 (1995)). Please note that several mutations in the DNA result in the expression of the same mutant BRCA1 protein because each mutation causes a stop codon to be formed at nucleotide site 5676-5678. This corresponds to codon 1853 (TAC—Tyrosine). Thus, all of these mutations are very likely to cause the same effective result, for example, in terms of susceptibility to cancer or cancer typing. Therefore, detecting these mutations would be diagnostically significant and useful for assessing the susceptibility for cancer. Given these mutations, oligonucleotides complementary to the F regions of these mutations are prepared to assay for the presence of these mutations in a sample.
[0035] For the present invention, the truncating mutations are detected in the BRCA1 gene or a fragment thereof which contains a mutation which directly or indirectly causes the formation of an in-frame stop codon (TAA, TAG or TGA) prematurely at any of codons 2 to 1863 A premature in-frame stop codon is one that occurs before the natural stop codon, which does not occur in a wild-type BRCA1 gene and when expressed results in a truncated protein product.
[0036] These BRCA1 mutations of the present invention may also be defined as specifically hybridizing to an oligonucleotide probe having the sequence 5′ R1-R2-R3 3′ wherein R1 is an oligonucleotide of at least three nucleotides, R2 is complementary to TAA, TAG or TGA, and R3 is an oligonucleotide of at least three nucleotides, the probe hybridizing to a premature in-frame stop codon on the mutant BRCA1 gene.
[0037] Whenever defining an oligonucleotide probe in the present invention, probes capable of potentially hybridizing to the sense strand are referred to. It should be recognized that oligonucleotide probes having a sequence complementary to these oligonucleotide probes may also be used and may specifically hybridize to the anti-sense strand. For diagnostic purposes either may be used, as DNA from biological samples is generally double stranded and contains both the sense and anti-sense strands.
[0038] In the present invention, the following BRCA1 mutations of the present invention represent one base changes that result in the formation of an in frame TAA, TAG or TGA. These mutations of the present invention are defined by forming stop codons at specific locations in accordance with TABLE 3. Any expressed protein from BRCA1 genes with these types of mutations should be truncated accordingly. The substituted nucleotide is indicated in lower case letters.
1TABLE 3
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List of Nonsense Mutations
Stop Codon FormedNucleotide NumberBase Change
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TaA127T>A
TgA127T>g
tAA144G>T
tAA147G>T
tAA153C>T
tAG174C>T
tAA177A>T
TaA184T>A
TgA184T>g
tAG186G>T
TGa191T>A
TGa200T>A
tAG204G>T
TaG208T>A
tAG213A>T
tAA216G>T
tAG231A>T
TGa236T>A
TGa251C>A
tAA252A>T
TGa260C>A
tAA267A>T
tAG279C>T
tAG282A>T
tAA285A>T
TaA295C>A
TgA295C>g
tAG297C>T
TGa302T>A
TaA307T>A
TgA307T>g
TGa311T>A
tAG312A>T
tAA327A>T
tAA339C>T
tAA342G>T
tGA351A>T
tAA360C>T
tAA369G>T
tAG372G>T
TaG379T>A
tAA381A>T
TGa392T>A
tAG399C>T
TaG415T>A
tAG417G>T
TAa422T>A
TAg422T>G
TAa434T>A
TAg434T>G
tAA444A>T
tAG447A>T
tAA450G>T
tAA465G>T
tAA474A>T
tAA480G>T
tAA495C>T
TAa509C>A
TAg509C>G
tGA510A>T
tAA522A>T
tGA525A>T
tAG534C>T
tAA540G>T
tAA546G>T
TaG559T>A
tAG561C>T
tAA564G>T
tAA582C>T
tGA597G>T
tGA606A>T
tAG621A>T
tAG624C>T
tAA633C>T
tAA639C>T
tAG642A>T
TAa656C>A
TAg656C>G
tAA660G>T
TaG664T>A
tGA666G>T
tAA681G>T
tAG696A>T
TAa707T>A
TAg707T>G
TGa710C>A
tGA717G>T
tAA723C>T
tAA726G>T
TaG730T>A
TaA733T>A
TgA733T>g
tAA735C>T
tAA747C>T
tGA750G>T
tAA762G>T
TaG772T>A
tAA783A>T
tAG786A>T
TGa797T>A
tAA798G>T
tAG807G>T
tAA828G>T
tAA837C>T
TaG856T>A
tAG867G>T
tAG870A>T
tAG882G>T
tAA894G>T
tAG897A>T
TAa902T>A
TAg902T>G
tAG903C>T
TaA919C>A
TgA919C>g
TaG925T>A
tAG933G>T
TGa941T>A
TaA964C>A
TgA964C>g
TaA967T>A
TgA967T>g
tAG969C>T
tAG975G>T
TaA988T>A
TgA988T>g
TaA991T>A
TgA991T>g
tAA999A>T
tGA1005A>T
tAA1017G>T
tAG1020A>T
tAA1026G>T
TGa1034T>A
tAA1038A>T
tAA1044A>T
tAG1047C>T
TaA1057T>A
TgA1057T>g
tAA1068C>T
tGA1077A>T
TaG1081G>A
TGa1082G>A
tGA1086G>T
tAG1092A>T
tAA1095G>T
TGa1103T>A
tAA1128G>T
tAA1131A>T
tAG1134A>T
TGa1163T>A
tAG1164G>T
tGA1167A>T
tAA1170A>T
tAA1173G>T
TaG1177G>A
TGa1178G>A
tAG1182A>T
tAG1185C>T
tAA1188A>T
TGa1199C>A
TaA1201C>A
TgA1201C>g
tAG1203G>T
tGA1212A>T
tAA1221G>T
TaG1234G>A
TGa1235G>A
tAG1257C>T
tAA1260A>T
tAG1269G>T
TaG1273G>A
TGa1274G>A
tGA1281A>T
tAA1290G>T
TaA1297T>A
TgA1297T>g
TaA1312C>A
TgA1312C>g
tAG1323G>T
tAA1329G>T
TaA1333C>A
TgA1333C>g
tAA1341A>T
TaG1357T>A
tAG1371G>T
tAA1380G>T
TAa1385T>A
TAg1385T>G
TaA1396C>A
TgA1396C>g
tAG1398G>T
tAA1401A>T
TaA1411T>A
TgA1411T>g
tAG1431G>T
TaA1438T>A
TgA1438T>g
TGa1445T>A
tAA1446A>T
tAA1452G>T
tGA1455A>T
tAA1467A>T
TaA1471C>A
TgA1471C>g
tAG1476G>T
tAA1488G>T
tAA1494A>T
tAA1506A>T
TAa1514T>A
TAg1514T>G
tAG1518A>T
tAG1521A>T
TaA1540T>A
TgA1540T>g
tAA1554G>T
tGA1569G>T
tAG1584G>T
tAG1590C>T
tAA1599C>T
tAG1602G>T
tAA1620A>T
TaA1624T>A
TgA1624T>g
tAG1626A>T
tAA1632A>T
tGA1638A>T
TaA1648C>A
TgA1648C>g
tAG1662G>T
tAG1674A>T
tAA1677A>T
TaG1687T>A
tAA1695C>T
tAG1698A>T
tAA1707G>T
tAG1719C>T
tGA1722G>T
tAA1731C>T
tAG1737G>T
tAG1740C>T
tAA1749C>T
tAG1779G>T
tAA1785A>T
tAA1791A>T
tAG1806C>T
tAG1812G>T
tAA1815A>T
tAA1833G>T
TaA1837C>A
TgA1837C>g
tAA1842G>T
tAA1845A>T
tAA1848G>T
tAA1860A>T
tAA1866A>T
tAA1872G>T
tAA1902G>T
tAA1908G>T
TaA1912T>A
TgA1912T>g
TaA1927C>A
TgA1927C>g
tAA1929A>T
tAA1938A>T
tAG1941A>T
tAG1959A>T
tAA1989G>T
tGA2004A>T
TGa2027T>A
tAA2031G>T
TaG2035T>A
tAA2037C>T
TGa2051T>A
tAA2061G>T
tAG2064G>T
tAG2070A>T
tAA2073A>T
tAA2076A>T
tAG2079A>T
TAa2084C>A
TAg2084C>G
tAA2088C>T
tGA2109A>T
tAA2118C>T
tAA2127G>T
tAA2133A>T
tAA2136G>T
tGA2148G>T
tAG2154A>T
tAG2157A>T
tAG2166A>T
tAA2175G>T
tAG2178C>T
tAA2187A>T
tGA2190A>T
tAG2214G>T
tAG2220A>T
TaA2224T>A
TgA2224T>g
tAG2250A>T
TGa2255T>A
TaA2257C>A
TgA2257C>g
tAA2268G>T
tAA2274A>T
tAA2277G>T
tGA2301A>T
tAA2304G>T
tAA2307G>T
tAA2310A>T
tAA2313G>T
tAG2316G>T
tAA2319A>T
tAA2325G>T
tAA2334A>T
tAA2352G>T
tAA2361A>T
TaA2374T>A
TgA2374T>g
tGA2379G>T
tAA2382G>T
TaG2392T>A
tAA2394C>T
tAA2400G>T
tGA2403A>T
tAG2412G>T
TaA2428C>A
TgA2428C>g
TAa2450T>A
TAg2450T>G
tAG2457C>T
tAA2460G>T
TaG2470C>A
TaA2473T>A
TgA2473T>g
tAA2478G>T
tAG2496A>T
tAA2502A>T
tAA2508G>T
tAA2517A>T
TGa2522T>A
tAG2529C>T
TGa2534T>A
tAA2544G>T
tAG2553A>T
tGA2556G>T
TGa2573T>A
tAA2577A>T
tGA2586A>T
tAA2598G>T
tAG2607A>T
TAa2612T>A
TAg2612T>G
TaG2617T>A
tGA2619G>T
tAA2625G>T
tAA2643G>T
tAA2655G>T
tAA2661G>T
tAA2664G>T
tAA2670G>T
tAG2682C>T
TAa2687T>A
TAg2687T>G
TaG2689T>A
tAG2691C>T
tAG2703A>T
TaA2710C>A
TgA2710C>g
tAG2712A>T
tAG2718C>T
TaA2722C>A
TgA2722C>g
TaA2737C>A
TgA2737C>g
tGA2745G>T
tAA2754G>T
tAG2757G>T
tAA2760G>T
TGa2765T>A
TaA2794T>A
TgA2794T>g
tAG2796A>T
tAA2799A>T
tAA2802C>T
tAA2811A>T
tAA2823G>T
TGa2828T>A
tAA2829G>T
tAA2832C>T
tAG2835A>T
tAA2838G>T
tAA2841G>T
tAA2847C>T
tGA2850G>T
tAG2853A>T
tAG2859G>T
tAG2871A>T
tAG2880C>T
tAG2919C>T
tAA2922A>T
tAG2928A>T
tAA2946A>T
TGa2951T>A
tAA2958A>T
tGA2961G>T
TGa2978T>A
TaA2983C>A
TgA2983C>g
tAG2988C>T
tGA2994A>T
tAA3003G>T
tGA3009G>T
tAA3027A>T
tGA3033G>T
TaA3040T>A
TgA3040T>g
tAA3042C>T
TAa3053T>A
TAg3053T>G
tAG3078A>T
TaA3082C>A
TgA3082C>g
tAA3090A>T
tAA3096A>T
TGa3101T>A
tAG3102A>T
tAA3105A>T
tAG3117G>T
tAA3120G>T
tAG3129G>T
tAA3132G>T
TaA3139C>A
TgA3139C>g
TaA3145C>A
TgA3145C>g
tAA3150G>T
tGA3153A>T
tAA3156G>T
tGA3162G>T
tAG3168G>T
tGA3213A>T
tAA3216G>T
tAA3228A>T
tGA3231G>T
TaA3241C>A
TgA3241C>g
tAA3255G>T
tAA3276G>T
tAA3297G>T
tAA3315G>T
tAA3324C>T
tAA3330G>T
tGA3339A>T
tGA3345A>T
tAA3354A>T
TaG3358T>A
tGA3372A>T
TaA3376T>A
TgA3376T>g
TaG3385T>A
tAA3387C>T
tAG3393G>T
TAa3401T>A
TAg3401T>G
tAA3402A>T
tAA3405C>T
tGA3417G>T
TGa3428T>A
tAG3429A>T
tAA3438G>T
tAA3444A>T
tAG3447A>T
tAA3450C>T
tAA3453G>T
TAa3458T>A
TAg3458T>G
tAA3459G>T
tAA3462G>T
tAG3471C>T
TAa3500T>A
TAg3500T>G
TaA3508C>A
TgA3508C>g
TaA3517T>A
TgA3517T>g
tAA3519G>T
tAG3522C>T
tGA3531G>T
tAG3549C>T
TGa3557T>A
tAG3561G>T
TaA3580T>A
TgA3580T>g
tAA3591G>T
tAG3597A>T
tAA3600G>T
tAA3618G>T
tAG3630A>T
tAA3633G>T
tAA3654A>T
tAG3663C>T
tGA3666A>T
tGA3669G>T
tAG3672G>T
TaG3712T>A
tAG3717C>T
TAa3725C>A
TAg3725C>G
tGA3726C>T
tGA3729A>T
tAG3738A>T
tAA3741A>T
TaA3745T>A
TgA3745T>g
tAG3747G>T
TaA3754C>A
TgA3754C>g
tAA3756G>T
tAG3759G>T
TaA3766T>A
TgA3766T>g
tAG3774G>T
tAA3780G>T
tAG3783G>T
TGa3794C>A
tAA3798C>T
TaG3805T>A
TaA3808T>A
TgA3808T>g
tAA3816A>T
tAG3837C>T
tAG3867G>T
TGa3872T>A
tAG3879A>T
tAG3888G>T
tAG3891G>T
TaA3898T>A
TgA3898T>g
TaA3901T>A
TgA3901T>g
TaA3904C>A
TgA3904C>g
TaG3907T>A
tAG3909A>T
TaA3919T>A
TgA3919T>g
TGa3929C>A
tAG3936C>T
TaG3946T>A
tAG3951A>T
tAG3960C>T
tAA3963G>T
tAG3978G>T
tAA3981G>T
tAA3987A>T
TGa3992T>A
TaG4003T>A
TaA4012C>A
TgA4012C>g
tAG4014C>T
TGa4019C>A
tAA4023G>T
TaG4027T>A
tAA4029G>T
TaG4036T>A
tAG4056C>T
TaG4069T>A
tAA4083A>T
tAA4086C>T
tAG4098C>T
tAA4104G>T
tAG4110C>T
tGA4113G>T
tAG4131A>T
tAA4134G>T
TaG4138T>A
TaA4144C>A
TgA4144C>g
tAA4152G>T
tAA4155G>T
tGA4158A>T
tGA4161G>T
TaG4171T>A
tAA4173G>T
tAA4176G>T
tAA4185C>T
tAA4188G>T
tAG4191G>T
tAA4194C>T
TaA4207C>A
TgA4207C>g
TaA4213T>A
TgA4213T>g
tAA4218G>T
TGa4235T>A
tAG4236G>T
tAA4242G>T
tAA4257G>T
TGa4265C>A
TaA4267C>A
TgA4267C>g
tAG4281C>T
TaA4294T>A
TgA4294T>g
tAG4302C>T
tAG4305C>T
tAA4320C>T
tAG4335A>T
tAG4341C>T
tAG4344C>T
tAA4347G>T
tAA4356G>T
tAA4362G>T
TaA4372T>A
TgA4372T>g
tAA4374G>T
tAG4377C>T
tAG4389C>T
TAa4406C>A
TAg4406C>G
tAG4437G>T
tGA4446C>T
tAA4455G>T
tAA4458C>T
TaA4468C>A
TgA4468C>g
tAA4470G>T
tAA4473A>T
TaA4483T>A
TgA4483T>g
TaA4489C>A
TgA4489C>g
tAG4491C>T
tAA4494A>T
tAA4503G>T
TAa4508C>A
TAg4508C>G
tAG4518C>T
tAA4527G>T
tAG4545A>T
tAG4551G>T
tAA4578A>T
tAA4584A>T
tAA4587G>T
tGA4593G>T
tAA4599G>T
TaA4606C>A
TgA4606C>g
tAA4617A>T
TGa4622C>A
TaA4627C>A
TgA4627C>g
TaA4630T>A
TgA4630T>g
TaG4642G>A
TGa4643G>A
TAa4646C>A
TAg4646C>G
TGa4658C>A
tAG4671C>T
tGA4677A>T
TAa4685C>A
TAg4685C>G
tAA4692C>T
tAG4695G>T
tAG4698G>T
tAG4707A>T
tAG4722G>T
tAG4725G>T
tAA4728C>T
tAG4731C>T
tAA4737G>T
tAG4740G>T
TaG4759T>A
tAA4764G>T
TAa4775C>A
TAg4775C>G
TaG4777T>A
tAA4785C>T
tAG4794G>T
tGA4797G>T
TAa4808C>A
TAg4808C>G
tAA4812G>T
tGA4818G>T
tAA4845G>T
tAA4860G>T
tGA4866A>T
tAG4875G>T
TaA4879C>A
TgA4879C>g
TaA4906C>A
TgA4906C>g
TaG4918T>A
tAA4920A>T
tAA4929C>T
TaG4933T>A
tAA4935A>T
tAA4944G>T
tAG4953C>T
TAa4994T>A
TAg4994T>G
tAA5004G>T
tAA5007G>T
tAG5022G>T
tAG5025A>T
tAA5031G>T
TaG5035T>A
TaA5044C>A
TgA5044C>g
tAA5049G>T
tAA5061A>T
tGA5064A>T
tAA5097G>T
tAA5100G>T
TAa5117C>A
TAg5117C>G
tAG5118A>T
tGA5127A>T
tAA5130A>T
TaA5146T>A
TgA5146T>g
tAA5163G>T
tAG5166G>T
tAA5187A>T
tAG5199G>T
TGa5210T>A
tAA5211G>T
tAA5223A>T
TAa5228T>A
TAg5228T>G
tGA5235G>T
tGA5244G>T
tGA5247G>T
tAA5250A>T
TaG5254G>A
TGa5255G>A
TAa5267T>A
TAg5267T>G
TaG5272G>A
TGa5273G>A
tAG5280C>T
tAA5289A>T
tAA5292G>T
tGA5295A>T
tAA5298A>T
tAG5310G>T
tAA5322G>T
tGA5328A>T
tGA5331G>T
tGA5346G>T
tGA5349A>T
tAA5358C>T
tAG5367A>T
tGA5370C>T
tGA5376A>T
tAA5379G>T
tAG5385C>T
tGA5391A>T
tAG5394A>T
tAA5412G>T
TGa5420T>A
TGa5423C>A
TAa5426T>A
TAg5426T>G
tAA5454C>T
tAA5460G>T
TaG5464G>A
TGa5465G>A
tAG5472C>T
TGa5480T>A
tAG5496A>T
tAG5499G>T
TaA5506C>A
TgA5506C>g
TaA5509C>A
TgA5509C>g
tAG5550C>T
TaG5563G>A
TGa5564G>A
tAG5568G>T
tAG5595C>T
TGa5603T>A
tAG5604G>T
tGA5622C>T
tAG5625G>T
TaG5629G>A
TGa5630G>A
TaG5635T>A
TAa5654C>A
TAg5654C>G
tAG5655C>T
TGa5660C>A
tAG5661C>T
tAG5664G>T
TAa5678C>A
TAg5678C>G
tAG5688C>T
TAa5708C>A
TAg5708C>G
TaA5710G>A
|
[0039] The genes of the present invention containing nonsense mutations are also defined as BRCA1 genes having the sequence 5′ R1-R2-R3 3′; where R1 is the wild type BRCA1 DNA sequence from codon 1 to X−1; R2 is TAA, TAG or TGA; R3 is the wild type BRCA1 DNA sequence from codon X+1 to 1862; and where X=2 to 1861.
[0040] The genes of the present invention containing nonsense mutations are also defined by being capable of specifically hybridizing to an oligonucleotide probe having at least 12 nucleotides in length and having the sequence 5′ R1-R2-R3 3′; where R1 contains at its 3′ end three nucleotides complementary to codon X−1 of the wild-type BRCA1 gene; R2=a sequence complementary to TAG, TGA or TAA; R3 contains at its 5′ end three nucleotides complementary to codon X+1 of the wild type BRCA1 gene; where X=2 to 1862 Other oligonucleotide probes complementary to these probes are also acceptable, hybridizing to the antisense strand. The oligonucleotide probe is unable to specifically hybridize to the wild-type BRCA1 gene with the same binding affinity as to the mutant BRCA1 gene.
[0041] The present invention also involves frame shift mutations involving insertions or deletions of 1, 2, 4, 5, 7, 8, or any other number which is not 3 or a multiple of 3, nucleotides. Single base deletions of the present invention form one or more stop codons as indicated in the following TABLE 4. The formed in-frame stop codon and the location are provided. Any expressed protein from BRCA1 genes with these types of mutations should be truncated accordingly. It should be recognized that the present invention includes deletions of 3n+1 bases, where n is an integer greater than zero and less than 1862. These larger deletions mutations have stop codons at nucleotide numbers corresponding to the listed stop codon at the nucleotide number listed. The corresponding nucleotide numbers of the stop codons will be 3n nucleotides smaller than those listed.
2TABLE 4
|
|
Single Base Deletions
Codon FormedNucleotide Number
|
TAG183-185
TGA207-209
TGA264-266
TGA249-251
TGA258-260
TGA309-311
TAA321-323
TGA378-380
TAA471-473
TAG420-422
TAA432-434
TGA603-605
TAA507-509
TGA612-614
TAA816-818
TAA654-656
TGA708-710
TGA855-857
TGA1008-1010
TAA918-920
TAG1014-1016
TAG1056-1058
TGA1032-1034
TAG1137-1139
TGA1101-1103
TGA1143-1145
TAA1236-1238
TGA1176-1178
TAG1200-1202
TGA1233-1235
TAA1242-1244
TAG1296-1298
TAG1344-1346
TAA1332-1334
TAA1365-1367
TAG1374-1376
TAG1404-1406
TAG1395-1397
TAA1437-1439
TAG1473-1475
TGA1443-1445
TAG1470-1472
TAA1539-1541
TAA1548-1550
TAA1560-1562
TAG1566-1568
TAA1593-1595
TAA1623-1625
TGA1710-1712
TAG1647-1649
TAA1713-1715
TGA1752-1754
TGA1755-1757
TAG1830-1832
TAA1878-1880
TAA1890-1892
TAA1911-1913
TGA1950-1952
TAA1926-1928
TAG1992-1994
TAG1995-1997
TAA2010-2012
TAA2067-2069
TGA2025-2027
TAA2067-2069
TGA2217-2219
TAA2082-2084
TGA2217-2219
TAA2223-2225
TAG2322-2324
TAA2256-2258
TAG2322-2324
TAA2373-2375
TAG2409-2411
TAG2490-2492
TAG2448-2450
TAG2490-2492
TGA2523-2525
TAA2559-2561
TAG2652-2654
TAA2793-2795
TAA2709-2711
TAA2793-2795
TAA2736-2738
TAA2793-2795
TAG3114-3116
TGA2949-2951
TAG3114-3116
TGA3099-3101
TAG3114-3116
TGA3186-3188
TAA3138-3140
TGA3186-3188
TAG3258-3260
TAA3240-3242
TAG3258-3260
TAG3300-3302
TAG3333-3335
TGA3357-3359
TAG3375-3377
TAA3441-3443
TAA3399-3401
TAA3441-3443
TGA3426-3428
TAA3441-3443
TAG3465-3467
TAG3456-3458
TAG3465-3467
TGA3501-3503
TAG3516-3518
TAG3507-3509
TAG3516-3518
TAG3579-3581
TAA3594-3596
TAG3744-3746
TAA3819-3821
TAG3753-3755
TAA3819-3821
TGA3906-3908
TAA3918-3920
TAA3939-3941
TGA3927-3929
TAA3939-3941
TGA4035-4037
TGA4017-4019
TGA4035-4037
TGA4068-4070
TGA4089-4091
TGA4122-4124
TAG4212-4214
TAG4143-4145
TAG4212-4214
TAA4206-4208
TAG4212-4214
TAA4293-4295
TAG4266-4268
TAA4293-4295
TGA4329-4331
TAA4332-4334
TAG4359-4361
TAG4371-4373
TAA4416-4418
TAA4482-4484
TAG4467-4469
TAA4482-4484
TAA4512-4514
TAG4629-4631
TGA4758-4760
TAA4644-4646
TGA4758-4760
TAG4791-4793
TGA4917-4919
TAG4878-4880
TGA4917-4919
TAA4905-4907
TGA4917-4919
TGA4932-4934
TGA5013-5015
TAA4992-4994
TGA5013-5015
TGA5034-5036
TGA5088-5090
TAA5043-5045
TGA5088-5090
TAA5145-5147
TAA5115-5117
TAA5145-5147
TAA5154-5156
TGA5184-5186
TGA5220-5222
TAG5232-5234
TAG5256-5258
TGA5274-5276
TGA5304-5306
TAG5409-5411
TGA5493-5495
TAG5424-5426
TGA5463-5465
TGA5616-5618
TGA5562-5564
TGA5616-5618
TAG5643-5645
TGA5679-5681
|
[0042] Two base deletions of the present invention form stop codons as indicated in the following TABLE 5. The formed in-frame stop codon and its location are provided. Any expressed protein from BRCA1 genes with these types of mutations should be truncated accordingly. It should be recognized that the present invention includes deletions of 3n+2 bases, where n is an integer greater than zero and less than 1862. These larger deletions mutations have stop codons at nucleotide numbers corresponding to the listed stop codon at the nucleotide number listed. The corresponding nucleotide numbers of the stop codons will be 3n nucleotides smaller than those listed.
3TABLE 5
|
|
Two Base Deletions
Codon FormedNucleotide Number
|
TGA141-143
TAA162-164
TGA234-236
TGA183-185
TGA234-236
TAA309-311
TGA249-251
TGA309-311
TGA315-317
TAG354-356
TGA366-368
TGA402-404
TAA378-380
TGA402-404
TAA432-434
TGA414-416
TAA432-434
TAA453-455
TGA462-464
TGA477-479
TGA537-539
TAG507-509
TGA537-539
TAA588-590
TGA657-659
TGA669-671
TGA678-680
TAA690-692
TAA693-695
TGA759-761
TAG705-707
TGA759-761
TAG708-710
TGA759-761
TGA795-797
TGA771-773
TGA795-797
TGA804-806
TGA825-827
TAA843-845
TAA846-848
TGA849-851
TGA864-866
TAA855-857
TGA864-866
TGA879-881
TAG906-908
TAA900-902
TAG906-908
TGA972-974
TAA918-920
TGA972-974
TAA996-998
TGA1023-1025
TGA1032-1034
TAA1035-1037
TAA1071-1073
TAA1089-1091
TGA1101-1103
TGA1104-1106
TAG1107-1109
TGA1149-1151
TGA1161-1163
TAA1179-1181
TGA1176-1178
TAA1179-1181
TAG1209-1211
TGA1200-1202
TAG1209-1211
TGA1218-1220
TAG1245-1247
TAA1263-1265
TGA1266-1268
TGA1284-1286
TAG1278-1280
TGA1284-1286
TGA1287-1289
TGA1302-1304
TGA1305-1307
TGA1314-1316
TGA1326-1328
TGA1347-1349
TAA1332-1334
TGA1347-1349
TGA1368-1370
TGA1356-1358
TGA1368-1370
TGA1377-1379
TGA1419-1421
TGA1395-1397
TGA1419-1421
TGA1428-1430
TGA1443-1445
TGA1449-1451
TAA1479-1481
TAA1464-1466
TAA1479-1481
TGA1485-1487
TGA1551-1553
TAG1512-1514
TGA1551-1553
TAG1539-1541
TGA1551-1553
TGA1581-1583
TAA1617-1619
TAA1629-1631
TAA1623-1625
TAA1629-1631
TGA1659-1661
TGA1704-1706
TAA1725-1727
TAA1764-1766
TAG1767-1769
TGA1776-1778
TAA1782-1784
TGA1794-1796
TGA1809-1811
TAA1821-1823
TGA1869-1871
TAA1857-1859
TGA1869-1871
TAA1935-1937
TAA1911-1913
TAA1935-1937
TAA1926-1928
TAA1935-1937
TAG1944-1946
TGA1986-1988
TAG2001-2003
TAA2019-2021
TGA2028-2030
TGA2040-2042
TAG2043-2045
TAG2052-2054
TGA2058-2060
TAA2130-2132
TAA2082-2084
TAA2130-2132
TAA2160-2162
TGA2172-2174
TAA2184-2186
TGA2193-2195
TGA2199-2201
TAA2247-2249
TGA2265-2267
TAA2256-2258
TGA2265-2267
TAA2271-2273
TAG2289-2291
TAA2331-2333
TAA2340-2342
TAA2343-2345
TGA2349-2351
TGA2397-2399
TAG2373-2375
TGA2397-2399
TAG2415-2417
TGA2442-2444
TAG2481-2483
TAG2448-2450
TAG2481-2483
TAA2514-2516
TGA2541-2543
TAA2580-2582
TAA2574-2576
TAA2580-2582
TAG2583-2585
TGA2589-2591
TAA2604-2606
TGA2622-2624
TAA2628-2630
TGA2667-2669
TGA2673-2675
TGA2820-2822
TAA2700-2702
TGA2820-2822
TAA2709-2711
TGA2820-2822
TAA2736-2738
TGA2820-2822
TAA2793-2795
TGA2820-2822
TGA2826-2828
TGA2856-2858
TAA2862-2864
TAA2886-2888
TAA2925-2927
TGA2934-2936
TAA2937-2939
TAG2949-2951
TAG2967-2969
TAA3024-3026
TAG2991-2993
TAA3024-3026
TAA3087-3089
TAG3051-3053
TAA3087-3089
TAA3093-3095
TGA3099-3101
TGA3126-3128
TGA3147-3149
TGA3165-3167
TAG3195-3197
TAA3201-3203
TAA3204-3206
TAG3210-3212
TAA3225-3227
TAA3249-3251
TAG3240-3242
TAA3249-3251
TGA3252-3254
TAA3270-3272
TAG3264-3266
TAA3270-3272
TGA3273-3275
TAA3291-3293
TAG3285-3287
TAA3291-3293
TGA3294-3296
TGA3309-3311
TAG3306-3308
TGA3309-3311
TGA3312-3314
TAG3336-3338
TAG3369-3371
TAA3357-3359
TAG3369-3371
TGA3390-3392
TAA3399-3401
TAA3420-3422
TGA3426-3428
TGA3435-3437
TAA3456-3458
TAA3477-3479
TAA3510-3512
TGA3507-3509
TAA3510-3512
TAG3534-3536
TGA3516-3518
TAG3534-3536
TGA3558-3560
TGA3567-3569
TGA3570-3572
TGA3582-3584
TGA3579-3581
TGA3582-3584
TGA3588-3590
TAG3606-3608
TGA3615-3617
TGA3621-3623
TAA3627-3629
TAG3648-3650
TAG3675-3677
TAG3687-3689
TAG3768-3770
TAG3723-3725
TAG3768-3770
TGA3744-3746
TAG3768-3770
TGA3753-3755
TAG3768-3770
TGA3771-3773
TGA3777-3779
TAA3813-3815
TAG3843-3845
TAG3849-3851
TAA3876-3878
TAG3912-3914
TAA3906-3908
TAG3912-3914
TGA3921-3923
TAA3918-3920
TGA3921-3923
TAA3930-3932
TAG3927-3929
TAA3930-3932
TAG3972-3974
TGA3975-3977
TAG3996-3998
TGA4020-4022
TAG4017-4019
TGA4020-4022
TGA4101-4103
TGA4026-4028
TGA4101-4103
TAA4080-4082
TGA4101-4103
TGA4125-4127
TGA4146-4148
TGA4143-4145
TGA4146-4148
TGA4149-4151
TAA4179-4181
TGA4170-4172
TAA4179-4181
TGA4215-4217
TAA4206-4208
TGA4215-4217
TGA4233-4235
TGA4239-4241
TGA4254-4256
TGA4284-4286
TAA4323-4325
TGA4353-4355
TAA4395-4397
TGA4371-4373
TAA4395-4397
TGA4419-4421
TGA4434-4436
TAG4497-4499
TGA4467-4469
TAG4497-4499
TGA4500-4502
TGA4539-4541
TGA4548-4550
TAG4563-4565
TAA4575-4577
TAA4581-4583
TAA4614-4616
TGA4632-4634
TGA4629-4631
TGA4632-4634
TAG4635-4637
TAG4674-4676
TGA4641-4643
TAG4674-4676
TAA4704-4706
TGA4713-4715
TGA4833-4835
TGA4836-4838
TGA4842-4844
TGA4848-4850
TGA4857-4859
TGA4977-4979
TAA4917-4919
TGA4977-4979
TAA4932-4934
TGA4977-4979
TAA4992-4994
TAA5148-5150
TAA5115-5117
TAA5148-5150
TGA5160-5162
TGA5196-5198
TGA5208-5210
TAG5259-5261
TAA5286-5288
TGA5307-5309
TGA5313-5315
TGA5319-5321
TGA5601-5603
TAG5400-5402
TGA5601-5603
TGA5421-5423
TGA5601-5603
TAG5424-5426
TGA5601-5603
TGA5634-5636
TAA5652-5654
TGA5658-5660
TAG5706-5708
|
[0043] Deletion mutations in the BRCA1 gene containing a truncating mutation may also be defined as having the sequence 5′ R1-R2 3′; where R1 is the wild type BRCA1 DNA sequence from nucleotide number 120 to X; R2 contains the wild type BRCA1 DNA sequence from nucleotide number X+Y+1 to 5571, where Y=3n+1 or 3n+2 where n is an integer of zero or greater; and where X=123 to 5707.
[0044] Alternatively, the mutations may be defined as being specifically hybridizable to an oligonucleotide probe being at least 12 nucleotides in length and having the sequence 5′ R1-R2 3′; where R1 contains at its 3′ end three nucleotides complementary to nucleotide numbers X-2, X-1 and X the wild-type BRCA1 gene; R2 contains at its 5′ end three nucleotides complementary to nucleotide numbers X+Y+1, X+Y+2, and X+Y+3 of the wild type BRCA1 DNA sequence; where Y=3n+1 or 3n+2 where n is an integer of zero or greater; and where X=122 to 5706.
[0045] Single base insertions of the present invention form stop codons as indicated in the following TABLE 6. The formed in-frame stop codon and the location are provided. Any expressed protein from BRCA1 genes with these types of mutations should be truncated accordingly. It should be recognized that the present invention includes insertions of 3n+1 bases, where n is an integer greater than zero and less than 1861. These larger insertions mutations have stop codons at nucleotide numbers corresponding to the listed stop codon at the nucleotide number listed. The corresponding nucleotide numbers of the stop codons will be 3n nucleotides larger than those listed.
4TABLE 6
|
|
Single Base Insertions
Codon FormedNucleotide Number
|
TGA144-146
TGA123-125
TGA144-146
TAA165-167
TGA144-146
TAA165-167
TGA147-149
TAA165-167
TAA156-158
TAA165-167
TGA237-239
TAA165-167
TGA237-239
TAA177-179
TGA237-239
TGA186-188
TGA237-239
TAG189-191
TGA237-239
TGA189-191
TGA237-239
TAG198-200
TGA237-239
TGA198-200
TGA237-239
TGA204-206
TGA237-239
TAA213-215
TGA237-239
TGA216-218
TGA237-239
TAA231-233
TGA237-239
TAG234-236
TGA237-239
TGA234-236
TGA237-239
TAA312-314
TGA237-239
TAA312-314
TAG249-251
TAA312-314
TGA249-251
TAA312-314
TAA252-254
TAA312-314
TAG258-260
TAA312-314
TGA258-260
TAA312-314
TAA267-269
TAA312-314
TAA276-278
TAA312-314
TAA282-284
TAA312-314
TAA285-287
TAA312-314
TAG300-302
TAA312-314
TGA300-302
TAA312-314
TAG309-311
TAA312-314
TGA309-311
TAA312-314
TGA318-320
TAA312-314
TGA318-320
TAA315-317
TGA318-320
TAG357-359
TGA318-320
TAG357-359
TAA327-329
TAG357-359
TAG330-332
TAG357-359
TAG333-335
TAG357-359
TGA342-344
TAG357-359
TAG345-347
TAG357-359
TAG351-353
TAG357-359
TGA369-371
TAG357-359
TGA369-371
TGA405-407
TGA369-371
TGA405-407
TGA372-374
TGA405-407
TAA381-383
TGA405-407
TAG390-392
TGA405-407
TGA390-392
TGA405-407
TAA435-437
TGA405-407
TAA435-437
TGA417-419
TAA435-437
TAA420-422
TAA435-437
TGA420-422
TAA435-437
TAA420-422
TAA435-437
TAG420-422
TAA435-437
TAA426-428
TAA435-437
TAG429-431
TAA435-437
TAA432-434
TAA435-437
TGA432-434
TAA435-437
TAA432-434
TAA435-437
TAG432-434
TAA435-437
TAA456-458
TAA435-437
TAA456-458
TAA444-446
TAA456-458
TAA447-449
TAA456-458
TGA450-452
TAA456-458
TAA453-455
TAA456-458
TGA465-467
TAA456-458
TGA465-467
TGA480-482
TGA465-467
TGA480-482
TAA474-476
TGA480-482
TGA477-479
TGA480-482
TGA540-542
TGA480-482
TGA540-542
TAG498-500
TGA540-542
TAA507-509
TGA540-542
TGA507-509
TGA540-542
TAA507-509
TGA540-542
TAG507-509
TGA540-542
TAG510-512
TGA540-542
TAA513-515
TGA540-542
TAA522-524
TGA540-542
TAG525-527
TGA540-542
TAG537-539
TGA540-542
TAA591-593
TGA540-542
TAA591-593
TGA546-548
TAA591-593
TAA549-551
TAA591-593
TGA564-566
TAA591-593
TAG570-572
TAA591-593
TAG576-578
TAA591-593
TGA660-662
TAA591-593
TGA660-662
TAG606-608
TGA660-662
TAG615-617
TGA660-662
TAA621-623
TGA660-662
TAA642-644
TGA660-662
TAA654-656
TGA660-662
TGA654-656
TGA660-662
TAA654-656
TGA660-662
TAG654-656
TGA660-662
TGA672-674
TGA660-662
TGA672-674
TGA681-683
TGA672-674
TGA681-683
TAA693-695
TGA681-683
TAA693-695
TGA684-686
TAA693-695
TAA696-698
TAA693-695
TAA696-698
TGA762-764
TAA696-698
TGA762-764
TAA705-707
TGA762-764
TGA705-707
TGA762-764
TAA705-707
TGA762-764
TAG705-707
TGA762-764
TAG708-710
TGA762-764
TGA708-710
TGA762-764
TAG711-713
TGA762-764
TGA720-722
TGA762-764
TGA726-728
TGA762-764
TAG756-758
TGA762-764
TGA759-761
TGA762-764
TGA798-800
TGA762-764
TGA798-800
TAG768-770
TGA798-800
TGA774-776
TGA798-800
TAA783-785
TGA798-800
TAA786-788
TGA798-800
TAG795-797
TGA798-800
TGA795-797
TGA798-800
TGA807-809
TGA798-800
TGA807-809
TGA828-830
TGA807-809
TGA828-830
TGA813-815
TGA828-830
TAA822-824
TGA828-830
TAA846-848
TGA828-830
TAA846-848
TAG843-845
TAA846-848
TAA849-851
TAA846-848
TAA849-851
TGA852-854
TAA849-851
TGA852-854
TGA867-869
TGA852-854
TGA867-869
TAA858-860
TGA867-869
TGA882-884
TGA867-869
TGA882-884
TAA870-872
TGA882-884
TAG909-911
TGA882-884
TAG909-911
TAG885-887
TAG909-911
TGA894-896
TAG909-911
TAA897-899
TAG909-911
TAA900-902
TAG909-911
TGA900-902
TAG909-911
TAA900-902
TAG909-911
TAG900-902
TAG909-911
TGA975-977
TAG909-911
TGA975-977
TAA921-923
TGA975-977
TGA933-935
TGA975-977
TAG939-941
TGA975-977
TGA939-941
TGA975-977
TAA948-950
TGA975-977
TAG960-962
TGA975-977
TAA 999-1001
TGA975-977
TAA 999-1001
TAA978-980
TAA 999-1001
TAG981-983
TAA 999-1001
TAG984-986
TAA 999-1001
TGA1026-1028
TAA 999-1001
TGA1026-1028
TGA1002-1004
TGA1026-1028
TAG1005-1007
TGA1026-1028
TAA1011-1013
TGA1026-1028
TGA1017-1019
TGA1026-1028
TAA1020-1022
TGA1026-1028
TAA1035-1037
TGA1026-1028
TAA1035-1037
TAG1032-1034
TAA1035-1037
TGA1032-1034
TAA1035-1037
TAA1038-1040
TAA1035-1037
TAA1038-1040
TAA1074-1076
TAA1038-1040
TAA1074-1076
TAG1041-1043
TAA1074-1076
TAA1044-1046
TAA1074-1076
TAG1062-1064
TAA1074-1076
TAG1065-1067
TAA1074-1076
TAA1092-1094
TAA1074-1076
TAA1092-1094
TAG1077-1079
TAA1092-1094
TAG1080-1082
TAA1092-1094
TGA1080-1082
TAA1092-1094
TAG1089-1091
TAA1092-1094
TAA1104-1106
TAA1092-1094
TAA1104-1106
TGA1095-1097
TAA1104-1106
TAG1101-1103
TAA1104-1106
TGA1101-1103
TAA1104-1106
TGA1107-1109
TAA1104-1106
TGA1107-1109
TAG1110-1112
TGA1107-1109
TAG1110-1112
TGA1152-1154
TAG1110-1112
TGA1152-1154
TAG1122-1124
TGA1152-1154
TGA1128-1130
TGA1152-1154
TAA1131-1133
TGA1152-1154
TAA1134-1136
TGA1152-1154
TGA1140-1142
TGA1152-1154
TAA1146-1148
TGA1152-1154
TGA1164-1166
TGA1152-1154
TGA1164-1166
TAG1161-1163
TGA1164-1166
TGA1161-1163
TGA1164-1166
TAA1182-1184
TGA1164-1166
TAA1182-1184
TAG1167-1169
TAA1182-1184
TAA1170-1172
TAA1182-1184
TGA1173-1175
TAA1182-1184
TAG1176-1178
TAA1182-1184
TGA1176-1178
TAA1182-1184
TAA1179-1181
TAA1182-1184
TAG1212-1214
TAA1182-1184
TAG1212-1214
TAA1188-1190
TAG1212-1214
TAG1197-1199
TAG1212-1214
TGA1197-1199
TAG1212-1214
TGA1203-1205
TAG1212-1214
TAA1206-1208
TAG1212-1214
TGA1221-1223
TAG1212-1214
TGA1221-1223
TGA1215-1217
TGA1221-1223
TAG1248-1250
TGA1221-1223
TAG1248-1250
TGA1224-1226
TAG1248-1250
TAG1233-1235
TAG1248-1250
TGA1233-1235
TAG1248-1250
TAA1245-1247
TAG1248-1250
TAA1266-1268
TAG1248-1250
TAA1266-1268
TAG1251-1253
TAA1266-1268
TAA1260-1262
TAA1266-1268
TGA1269-1271
TAA1266-1268
TGA1269-1271
TGA1287-1289
TGA1269-1271
TGA1287-1289
TAG1272-1274
TGA1287-1289
TGA1272-1274
TGA1287-1289
TAG1281-1283
TGA1287-1289
TAG1284-1286
TGA1287-1289
TGA1290-1292
TGA1287-1289
TGA1290-1292
TGA1305-1307
TGA1290-1292
TGA1305-1307
TGA1308-1310
TGA1305-1307
TGA1308-1310
TGA1317-1319
TGA1308-1310
TGA1317-1319
TGA1329-1331
TGA1317-1319
TGA1329-1331
TGA1323-1325
TGA1329-1331
TGA1350-1352
TGA1329-1331
TGA1350-1352
TAA1335-1337
TGA1350-1352
TAA1341-1343
TGA1350-1352
TGA1371-1373
TGA1350-1352
TGA1371-1373
TGA1359-1361
TGA1371-1373
TAA1368-1370
TGA1371-1373
TGA1380-1382
TGA1371-1373
TGA1380-1382
TGA1377-1379
TGA1380-1382
TGA1422-1424
TGA1380-1382
TGA1422-1424
TAA1383-1385
TGA1422-1424
TGA1383-1385
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TGA3870-3872
TAA3879-3881
TAG3915-3917
TAA3879-3881
TAG3915-3917
TAA3882-3884
TAG3915-3917
TGA3888-3890
TAG3915-3917
TGA3891-3893
TAG3915-3917
TAA3894-3896
TAG3915-3917
TAA3909-3911
TAG3915-3917
TAA3912-3914
TAG3915-3917
TGA3924-3926
TAG3915-3917
TGA3924-3926
TAA3921-3923
TGA3924-3926
TAA3933-3935
TGA3924-3926
TAA3933-3935
TAG3927-3929
TAA3933-3935
TGA3927-3929
TAA3933-3935
TAG3930-3932
TAA3933-3935
TAG3975-3977
TAA3933-3935
TAG3975-3977
TAA3951-3953
TAG3975-3977
TGA3963-3965
TAG3975-3977
TGA3978-3980
TAG3975-3977
TGA3978-3980
TAG3999-4001
TGA3978-3980
TAG3999-4001
TGA3981-3983
TAG3999-4001
TAA3987-3989
TAG3999-4001
TAG3990-3992
TAG3999-4001
TGA3990-3992
TAG3999-4001
TGA4023-4025
TAG3999-4001
TGA4023-4025
TAG4017-4019
TGA4023-4025
TGA4017-4019
TGA4023-4025
TAG4020-4022
TGA4023-4025
TGA4104-4106
TGA4023-4025
TGA4104-4106
TGA4029-4031
TGA4104-4106
TGA4032-4034
TGA4104-4106
TAA4044-4046
TGA4104-4106
TAA4050-4052
TGA4104-4106
TGA4059-4061
TGA4104-4106
TAA4083-4085
TGA4104-4106
TAG4092-4094
TGA4104-4106
TGA4128-4130
TGA4104-4106
TGA4128-4130
TAG4107-4109
TGA4128-4130
TAG4125-4127
TGA4128-4130
TGA4149-4151
TGA4128-4130
TGA4149-4151
TAA4131-4133
TGA4149-4151
TGA4134-4136
TGA4149-4151
TGA4146-4148
TGA4149-4151
TGA4152-4154
TGA4149-4151
TGA4152-4154
TAA4182-4184
TGA4152-4154
TAA4182-4184
TGA4155-4157
TAA4182-4184
TAG4158-4160
TAA4182-4184
TGA4173-4175
TAA4182-4184
TGA4176-4178
TAA4182-4184
TAA4179-4181
TAA4182-4184
TGA4218-4220
TAA4182-4184
TGA4218-4220
TGA4188-4190
TGA4218-4220
TGA4191-4193
TGA4218-4220
TAG4197-4199
TGA4218-4220
TGA4203-4205
TGA4218-4220
TAA4209-4211
TGA4218-4220
TGA4236-4238
TGA4218-4220
TGA4236-4238
TAG4233-4235
TGA4236-4238
TGA4233-4235
TGA4236-4238
TGA4242-4244
TGA4236-4238
TGA4242-4244
TAG4239-4241
TGA4242-4244
TGA4257-4259
TGA4242-4244
TGA4257-4259
TAG4248-4250
TGA4257-4259
TGA4287-4289
TGA4257-4259
TGA4287-4289
TGA4260-4262
TGA4287-4289
TAG4263-4265
TGA4287-4289
TGA4263-4265
TGA4287-4289
TAG4284-4286
TGA4287-4289
TAA4326-4328
TGA4287-4289
TAA4326-4328
TAG4308-4310
TAA4326-4328
TGA4311-4313
TAA4326-4328
TGA4356-4358
TAA4326-4328
TGA4356-4358
TAA4335-4337
TGA4356-4358
TGA4347-4349
TGA4356-4358
TAA4398-4400
TGA4356-4358
TAA4398-4400
TGA4362-4364
TAA4398-4400
TGA4374-4376
TAA4398-4400
TAG4386-4388
TAA4398-4400
TGA4422-4424
TAA4398-4400
TGA4422-4424
TAG4401-4403
TGA4422-4424
TAA4404-4406
TGA4422-4424
TGA4404-4406
TGA4422-4424
TAA4404-4406
TGA4422-4424
TAG4404-4406
TGA4422-4424
TAG4419-4421
TGA4422-4424
TGA4437-4439
TGA4422-4424
TGA4437-4439
TAG4500-4502
TGA4437-4439
TAG4500-4502
TGA4440-4442
TAG4500-4502
TAA4449-4451
TAG4500-4502
TGA4455-4457
TAG4500-4502
TAG4461-4463
TAG4500-4502
TGA4470-4472
TAG4500-4502
TAA4473-4475
TAG4500-4502
TAA4494-4496
TAG4500-4502
TAG4497-4499
TAG4500-4502
TGA4503-4505
TAG4500-4502
TGA4503-4505
TGA4542-4544
TGA4503-4505
TGA4542-4544
TAA4506-4508
TGA4542-4544
TGA4506-4508
TGA4542-4544
TAA4506-4508
TGA4542-4544
TAG4506-4508
TGA4542-4544
TAG4515-4517
TGA4542-4544
TAA4521-4523
TGA4542-4544
TGA4527-4529
TGA4542-4544
TGA4551-4553
TGA4542-4544
TGA4551-4553
TAA4545-4547
TGA4551-4553
TAG4566-4568
TGA4551-4553
TAG4566-4568
TGA4563-4565
TAG4566-4568
TAA4578-4580
TAG4566-4568
TAA4578-4580
TAG4575-4577
TAA4578-4580
TAA4584-4586
TAA4578-4580
TAA4584-4586
TAA4581-4583
TAA4584-4586
TAA4617-4619
TAA4584-4586
TAA4617-4619
TGA4587-4589
TAA4617-4619
TGA4599-4601
TAA4617-4619
TAG4602-4604
TAA4617-4619
TGA4635-4637
TAA4617-4619
TGA4635-4637
TAG4620-4622
TGA4635-4637
TGA4620-4622
TGA4635-4637
TGA4632-4634
TGA4635-4637
TAG4638-4640
TGA4635-4637
TAG4638-4640
TAG4677-4679
TAG4638-4640
TAG4677-4679
TAG4641-4643
TAG4677-4679
TGA4641-4643
TAG4677-4679
TAA4644-4646
TAG4677-4679
TGA4644-4646
TAG4677-4679
TAA4644-4646
TAG4677-4679
TAG4644-4646
TAG4677-4679
TAG4653-4655
TAG4677-4679
TAG4656-4658
TAG4677-4679
TGA4656-4658
TAG4677-4679
TAG4665-4667
TAG4677-4679
TAA4674-4676
TAG4677-4679
TAA4707-4709
TAG4677-4679
TAA4707-4709
TAA4680-4682
TAA4707-4709
TAA4683-4685
TAA4707-4709
TGA4683-4685
TAA4707-4709
TAA4683-4685
TAA4707-4709
TAG4683-4685
TAA4707-4709
TGA4695-4697
TAA4707-4709
TGA4698-4700
TAA4707-4709
TGA4716-4718
TAA4707-4709
TGA4716-4718
TGA4836-4838
TGA4716-4718
TGA4836-4838
TGA4722-4724
TGA4836-4838
TGA4725-4727
TGA4836-4838
TGA4737-4739
TGA4836-4838
TGA4740-4742
TGA4836-4838
TGA4755-4757
TGA4836-4838
TGA4764-4766
TGA4836-4838
TAA4773-4775
TGA4836-4838
TGA4773-4775
TGA4836-4838
TAA4773-4775
TGA4836-4838
TAG4773-4775
TGA4836-4838
TAG4782-4784
TGA4836-4838
TGA4788-4790
TGA4836-4838
TGA4794-4796
TGA4836-4838
TAA4806-4808
TGA4836-4838
TGA4806-4808
TGA4836-4838
TAA4806-4808
TGA4836-4838
TAG4806-4808
TGA4836-4838
TGA4812-4814
TGA4836-4838
TAG4824-4826
TGA4836-4838
TGA4839-4841
TGA4836-4838
TGA4839-4841
TGA4845-4847
TGA4839-4841
TGA4845-4847
TGA4851-4853
TGA4845-4847
TGA4851-4853
TGA4860-4862
TGA4851-4853
TGA4860-4862
TGA4980-4982
TGA4860-4862
TGA4980-4982
TGA4863-4865
TGA4980-4982
TAG4866-4868
TGA4980-4982
TGA4875-4877
TGA4980-4982
TAA4893-4895
TGA4980-4982
TAA4920-4922
TGA4980-4982
TAA4935-4937
TGA4980-4982
TGA4944-4946
TGA4980-4982
TAA4995-4997
TGA4980-4982
TAA4995-4997
TAA4992-4994
TAA4995-4997
TGA4992-4994
TAA4995-4997
TAA4992-4994
TAA4995-4997
TAG4992-4994
TAA4995-4997
TAA5151-5153
TAA4995-4997
TAA5151-5153
TGA5004-5006
TAA5151-5153
TGA5007-5009
TAA5151-5153
TAG5010-5012
TAA5151-5153
TAG5016-5018
TAA5151-5153
TAG5019-5021
TAA5151-5153
TGA5022-5024
TAA5151-5153
TAA5025-5027
TAA5151-5153
TGA5031-5033
TAA5151-5153
TGA5049-5051
TAA5151-5153
TAG5052-5054
TAA5151-5153
TAA5058-5060
TAA5151-5153
TAA5061-5063
TAA5151-5153
TAG5064-5066
TAA5151-5153
TGA5097-5099
TAA5151-5153
TGA5100-5102
TAA5151-5153
TAA5115-5117
TAA5151-5153
TGA5115-5117
TAA5151-5153
TAA5115-5117
TAA5151-5153
TAG5115-5117
TAA5151-5153
TAA5118-5120
TAA5151-5153
TAG5127-5129
TAA5151-5153
TAA5130-5132
TAA5151-5153
TGA5163-5165
TAA5151-5153
TGA5163-5165
TGA5199-5201
TGA5163-5165
TGA5199-5201
TGA5166-5168
TGA5199-5201
TAA5187-5189
TGA5199-5201
TGA5193-5195
TGA5199-5201
TGA5211-5213
TGA5199-5201
TGA5211-5213
TAG5208-5210
TGA5211-5213
TGA5208-5210
TGA5211-5213
TAG5262-5264
TGA5211-5213
TAG5262-5264
TAA5223-5225
TAG5262-5264
TAA5226-5228
TAG5262-5264
TGA5226-5228
TAG5262-5264
TAA5226-5228
TAG5262-5264
TAG5226-5228
TAG5262-5264
TAA5250-5252
TAG5262-5264
TAG5253-5255
TAG5262-5264
TGA5253-5255
TAG5262-5264
TAA5289-5291
TAG5262-5264
TAA5289-5291
TAA5265-5267
TAA5289-5291
TGA5265-5267
TAA5289-5291
TAA5265-5267
TAA5289-5291
TAG5265-5267
TAA5289-5291
TAG5271-5273
TAA5289-5291
TGA5271-5273
TAA5289-5291
TGA5310-5312
TAA5289-5291
TGA5310-5312
TGA5292-5294
TGA5310-5312
TAG5295-5297
TGA5310-5312
TAA5298-5300
TGA5310-5312
TAA5307-5309
TGA5310-5312
TGA5316-5318
TGA5310-5312
TGA5316-5318
TGA5322-5324
TGA5316-5318
TGA5322-5324
TGA5604-5606
TGA5322-5324
TGA5604-5606
TAG5328-5330
TGA5604-5606
TGA5334-5336
TGA5604-5606
TAA5343-5345
TGA5604-5606
TAG5349-5351
TGA5604-5606
TAA5352-5354
TGA5604-5606
TAA5367-5369
TGA5604-5606
TAG5376-5378
TGA5604-5606
TGA5379-5381
TGA5604-5606
TGA5388-5390
TGA5604-5606
TAG5391-5393
TGA5604-5606
TAA5394-5396
TGA5604-5606
TAG5403-5405
TGA5604-5606
TGA5412-5414
TGA5604-5606
TAG5418-5420
TGA5604-5606
TGA5418-5420
TGA5604-5606
TAG5421-5423
TGA5604-5606
TGA5421-5423
TGA5604-5606
TAA5424-5426
TGA5604-5606
TGA5424-5426
TGA5604-5606
TAA5424-5426
TGA5604-5606
TAG5424-5426
TGA5604-5606
TAA5439-5441
TGA5604-5606
TGA5451-5453
TGA5604-5606
TGA5460-5462
TGA5604-5606
TAG5463-5465
TGA5604-5606
TGA5463-5465
TGA5604-5606
TAG5478-5480
TGA5604-5606
TGA5478-5480
TGA5604-5606
TAA5496-5498
TGA5604-5606
TGA5499-5501
TGA5604-5606
TGA5556-5558
TGA5604-5606
TAG5562-5564
TGA5604-5606
TGA5562-5564
TGA5604-5606
TGA5568-5570
TGA5604-5606
TGA5571-5573
TGA5604-5606
TAA5574-5576
TGA5604-5606
TAG5601-5603
TGA5604-5606
TGA5601-5603
TGA5604-5606
TGA5625-5627
TGA5628-5630
TGA5637-5639
TAG5640-5642
TAG5652-5654
TGA5658-5660
TGA5664-5666
TGA5670-5672
TAG5676-5678
TAG5700-5702
TAG5706-5708
|
[0046] Two base insertions of the present invention form stop codons as indicated in the following TABLE 7. The formed in-frame stop codon and the location are provided. Any expressed protein from BRCA1 genes with these types of mutations should be truncated accordingly. It should be recognized that the present invention includes insertions of 3n+2 bases, where n is an integer greater than zero and less than 1861. These larger insertions mutations have stop codons at nucleotide numbers corresponding to the listed stop codon at the nucleotide number listed. The corresponding nucleotide numbers of the stop codons will be 3n nucleotides larger than those listed.
5TABLE 7
|
|
Two Base Insertions
Codon FormedNucleotide Number
|
TAG123-125
TAA126-128
TAG126-128
TGA126-128
TAA129-131
TAG129-131
TGA129-131
TAG132-134
TAG141-143
TAG144-146
TAG147-149
TAG150-152
TAA156-158
TAG159-161
TAA162-164
TAA165-167
TAG168-170
TAA171-173
TAA177-179
TGA177-179
TAA180-182
TAA183-185
TAG183-185
TGA183-185
TAG186-188
TAA189-191
TAG189-191
TGA189-191
TAA195-197
TAA198-200
TAG198-200
TGA198-200
TAG204-206
TAA207-209
TAG207-209
TGA207-209
TAA210-212
TGA210-212
TAA213-215
TAG216-218
TAG222-224
TAA225-227
TAG225-227
TGA225-227
TAA228-230
TAA231-233
TAA234-236
TAG234-236
TGA234-236
TAG237-239
TAA243-245
TAA246-248
TAG246-248
TGA246-248
TAA249-251
TAG249-251
TGA249-251
TAA252-254
TAA255-257
TAG255-257
TGA255-257
TAA258-260
TAG258-260
TGA258-260
TAA261-263
TAA267-269
TGA267-269
TAA276-278
TAA282-284
TGA282-284
TAA285-287
TGA285-287
TAG288-290
TAA294-296
TAG294-296
TGA294-296
TAA300-302
TAG300-302
TGA300-302
TAA306-308
TAG306-308
TGA306-308
TAA309-311
TAG309-311
TGA309-311
TAA312-314
TAA315-317
TGA315-317
TAG318-320
TAA321-323
TAA324-326
TAA327-329
TAA330-332
TAA333-335
TGA333-335
TAG342-344
TAA345-347
TAA348-350
TAA351-353
TGA351-353
TAA354-356
TAG354-356
TGA354-356
TAA357-359
TAG366-368
TAG369-371
TAG372-374
TAA378-380
TAG378-380
TGA378-380
TAA381-383
TGA381-383
TAA384-386
TAA387-389
TAA390-392
TAG390-392
TGA390-392
TAG393-395
TAA396-398
TAG396-398
TGA396-398
TAG405-407
TAA408-410
TAG411-413
TAA414-416
TAG414-416
TGA414-416
TAG417-419
TAA420-422
TAG420-422
TGA420-422
TAG423-425
TAA426-428
TAA429-431
TAA432-434
TAG432-434
TGA432-434
TAA435-437
TAA438-440
TAG438-440
TGA438-440
TAG441-443
TAA444-446
TAA447-449
TAG450-452
TAA453-455
TAA456-458
TAA459-461
TAG459-461
TGA459-461
TAG465-467
TAA474-476
TAG477-479
TAG480-482
TAG483-485
TAA486-488
TAG486-488
TGA486-488
TAA489-491
TAA492-494
TAA498-500
TAA501-503
TAG504-506
TAA507-509
TAG507-509
TGA507-509
TAA510-512
TAA513-515
TAG519-521
TAA522-524
TAA525-527
TAA537-539
TGA537-539
TAG540-542
TAG546-548
TAA549-551
TAA555-557
TAG555-557
TGA555-557
TAA558-560
TAG558-560
TGA558-560
TAG564-566
TAA567-569
TAA570-572
TAA576-578
TAG579-581
TAA588-590
TAG588-590
TGA588-590
TAA591-593
TAG597-599
TAA600-602
TAG603-605
TAA606-608
TGA606-608
TAA609-611
TAA615-617
TGA615-617
TAA618-620
TGA618-620
TAA621-623
TAA630-632
TGA630-632
TAA642-644
TAA645-647
TGA645-647
TAA648-650
TAG648-650
TGA648-650
TAG651-653
TAA654-656
TAG654-656
TGA654-656
TAA657-659
TAG660-662
TAA663-665
TAG663-665
TGA663-665
TAG666-668
TAA669-671
TAG669-671
TGA669-671
TAG672-674
TAA675-677
TAG675-677
TGA675-677
TAA678-680
TAG678-680
TGA678-680
TAG681-683
TAG684-686
TAA687-689
TAG690-692
TAA693-695
TAA696-698
TAG699-701
TAA702-704
TAA705-707
TAG705-707
TGA705-707
TAA708-710
TAG708-710
TGA708-710
TAA711-713
TAG714-716
TAG717-719
TAG720-722
TAG726-728
TAA729-731
TAG729-731
TGA729-731
TAA732-734
TAG732-734
TGA732-734
TAA738-740
TAA741-743
TAG750-752
TAA753-755
TAA756-758
TAG759-761
TAG762-764
TAA765-767
TAA768-770
TAA771-773
TAG771-773
TGA771-773
TAG774-776
TAA777-779
TAG777-779
TGA777-779
TAG780-782
TAA783-785
TAA786-788
TAG789-791
TAG792-794
TAA795-797
TAG795-797
TGA795-797
TAG798-800
TAA801-803
TAG801-803
TGA801-803
TAA804-806
TAG804-806
TGA804-806
TAG807-809
TAA810-812
TGA810-812
TAG813-815
TAG816-818
TAA819-821
TAA822-824
TAA825-827
TAG828-830
TAA843-845
TAA846-848
TAA849-851
TAG852-854
TAA855-857
TAG855-857
TGA855-857
TAA858-860
TGA858-860
TAA861-863
TAA864-866
TAG867-869
TAA870-872
TGA870-872
TAG876-878
TAG879-881
TAG882-884
TAA885-887
TGA885-887
TAG894-896
TAA897-899
TAA900-902
TAG900-902
TGA900-902
TAG906-908
TAA909-911
TAA912-914
TAG912-914
TGA912-914
TAG915-917
TAA918-920
TAG918-920
TGA918-920
TAA921-923
TAA924-926
TAG924-926
TGA924-926
TAG930-932
TAG933-935
TAA939-941
TAG939-941
TGA939-941
TAG942-944
TAA945-947
TAA948-950
TAA951-953
TAG957-959
TAA960-962
TAA963-965
TAG963-965
TGA963-965
TAA966-968
TAG966-968
TGA966-968
TAG975-977
TAA978-980
TGA978-980
TAA981-983
TAA984-986
TAA987-989
TAG987-989
TGA987-989
TAA990-992
TAG990-992
TGA990-992
TAA996-998
TAA 999-1001
TAG1002-1004
TAA1005-1007
TAA1008-1010
TAA1011-1013
TGA1011-1013
TAG1014-1016
TAG1017-1019
TAA1020-1022
TAG1023-1025
TAG1026-1028
TAA1029-1031
TAG1029-1031
TGA1029-1031
TAA1032-1034
TAG1032-1034
TGA1032-1034
TAA1035-1037
TAA1038-1040
TAA1041-1043
TAA1044-1046
TAG1053-1055
TAA1056-1058
TAG1056-1058
TGA1056-1058
TAG1059-1061
TAA1062-1064
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TAA3513-3515
TAA3516-3518
TAG3516-3518
TGA3516-3518
TAG3519-3521
TAA3528-3530
TAG3531-3533
TAA3534-3536
TAA3537-3539
TAG3543-3545
TAA3546-3548
TAG3546-3548
TGA3546-3548
TAG3552-3554
TAA3555-3557
TAG3555-3557
TGA3555-3557
TAA3558-3560
TAG3558-3560
TGA3558-3560
TAG3561-3563
TAA3564-3566
TGA3564-3566
TAG3570-3572
TAG3573-3575
TAA3579-3581
TAG3579-3581
TGA3579-3581
TAG3582-3584
TAG3585-3587
TAG3588-3590
TAG3591-3593
TAA3594-3596
TAA3597-3599
TAG3600-3602
TAG3603-3605
TAA3606-3608
TAA3609-3611
TAA3612-3614
TAG3612-3614
TGA3612-3614
TAG3615-3617
TAG3618-3620
TAA3621-3623
TAG3624-3626
TAA3627-3629
TAA3630-3632
TAG3633-3635
TAA3636-3638
TAA3639-3641
TAG3639-3641
TGA3639-3641
TAG3642-3644
TAG3645-3647
TAA3648-3650
TAG3648-3650
TGA3648-3650
TAA3651-3653
TAA3654-3656
TAA3657-3659
TAG3660-3662
TAA3666-3668
TGA3666-3668
TAG3669-3671
TAG3672-3674
TAA3678-3680
TAA3681-3683
TAA3684-3686
TGA3684-3686
TAA3690-3692
TAA3696-3698
TAG3696-3698
TGA3696-3698
TAA3699-3701
TAA3705-3707
TAA3711-3713
TAG3711-3713
TGA3711-3713
TAG3714-3716
TAG3720-3722
TAA3723-3725
TAG3723-3725
TGA3723-3725
TAA3729-3731
TAG3732-3734
TAG3735-3737
TAA3738-3740
TAA3741-3743
TGA3741-3743
TAA3744-3746
TAG3744-3746
TGA3744-3746
TAG3747-3749
TAA3750-3752
TAG3750-3752
TGA3750-3752
TAA3753-3755
TAG3753-3755
TGA3753-3755
TAG3756-3758
TAG3759-3761
TAA3762-3764
TGA3762-3764
TAA3765-3767
TAG3765-3767
TGA3765-3767
TAA3768-3770
TAG3768-3770
TGA3768-3770
TAA3771-3773
TAG3774-3776
TAG3777-3779
TAG3780-3782
TAG3783-3785
TAA3792-3794
TAG3792-3794
TGA3792-3794
TAA3795-3797
TAG3795-3797
TGA3795-3797
TAA3804-3806
TAG3804-3806
TGA3804-3806
TAA3807-3809
TAG3807-3809
TGA3807-3809
TAA3810-3812
TAG3810-3812
TGA3810-3812
TAG3813-3815
TAA3816-3818
TAG3819-3821
TAA3822-3824
TAA3825-3827
TAA3828-3830
TAA3834-3836
TAG3834-3836
TGA3834-3836
TAA3840-3842
TAG3840-3842
TGA3840-3842
TAA3843-3845
TAA3846-3848
TAA3852-3854
TAA3855-3857
TAG3858-3860
TAG3861-3863
TAA3864-3866
TAG3867-3869
TAA3870-3872
TAG3870-3872
TGA3870-3872
TAA3876-3878
TAG3876-3878
TGA3876-3878
TAA3879-3881
TAA3882-3884
TGA3882-3884
TAA3885-3887
TAG3888-3890
TAG3891-3893
TAA3894-3896
TGA3894-3896
TAA3897-3899
TAG3897-3899
TGA3897-3899
TAA3900-3902
TAG3900-3902
TGA3900-3902
TAA3903-3905
TAG3903-3905
TGA3903-3905
TAA3906-3908
TAG3906-3908
TGA3906-3908
TAA3909-3911
TGA3909-3911
TAA3912-3914
TGA3912-3914
TAA3915-3917
TAA3918-3920
TAG3918-3920
TGA3918-3920
TAA3921-3923
TAG3924-3926
TAA3927-3929
TAG3927-3929
TGA3927-3929
TAA3930-3932
TAA3933-3935
TAG3939-3941
TAA3942-3944
TAA3945-3947
TAG3945-3947
TGA3945-3947
TAG3948-3950
TAA3951-3953
TAG3954-3956
TAA3957-3959
TAG3957-3959
TGA3957-3959
TAG3963-3965
TAA3975-3977
TAG3978-3980
TAG3981-3983
TAA3984-3986
TAA3987-3989
TAA3990-3992
TAG3990-3992
TGA3990-3992
TAA3993-3995
TAG3993-3995
TGA3993-3995
TAG3996-3998
TAA3999-4001
TAA4002-4004
TAG4002-4004
TGA4002-4004
TAA4005-4007
TAG4005-4007
TGA4005-4007
TAA4008-4010
TAG4008-4010
TGA4008-4010
TAA4011-4013
TAG4011-4013
TGA4011-4013
TAA4017-4019
TAG4017-4019
TGA4017-4019
TAA4020-4022
TAG4023-4025
TAA4026-4028
TAG4026-4028
TGA4026-4028
TAG4029-4031
TAG4032-4034
TAA4035-4037
TAG4035-4037
TGA4035-4037
TAA4038-4040
TGA4038-4040
TAG4041-4043
TAA4044-4046
TAA4047-4049
TAA4050-4052
TAA4053-4055
TAG4059-4061
TAA4065-4067
TAG4065-4067
TGA4065-4067
TAA4068-4070
TAG4068-4070
TGA4068-4070
TAA4071-4073
TGA4071-4073
TAG4074-4076
TAA4077-4079
TAG4077-4079
TGA4077-4079
TAA4080-4082
TAG4080-4082
TGA4080-4082
TAA4083-4085
TAA4089-4091
TAA4092-4094
TGA4092-4094
TAA4101-4103
TAG4101-4103
TGA4101-4103
TAG4104-4106
TAA4107-4109
TAG4113-4115
TAG4116-4118
TAG4119-4121
TAA4125-4127
TGA4125-4127
TAG4128-4130
TAA4131-4133
TAG4134-4136
TAA4137-4139
TAG4137-4139
TGA4137-4139
TAG4140-4142
TAA4143-4145
TAG4143-4145
TGA4143-4145
TAG4146-4148
TAG4149-4151
TAG4152-4154
TAG4155-4157
TAA4158-4160
TAG4161-4163
TAA4164-4166
TAG4167-4169
TAA4170-4172
TAG4170-4172
TGA4170-4172
TAG4173-4175
TAG4176-4178
TAA4179-4181
TAA4182-4184
TAG4188-4190
TAG4191-4193
TAA4197-4199
TAA4200-4202
TAG4203-4205
TAA4206-4208
TAG4206-4208
TGA4206-4208
TAA4209-4211
TAA4212-4214
TAG4212-4214
TGA4212-4214
TAG4215-4217
TAG4218-4220
TAG4221-4223
TAG4224-4226
TAA4227-4229
TAG4227-4229
TGA4227-4229
TAG4230-4232
TAA4233-4235
TAG4233-4235
TGA4233-4235
TAG4236-4238
TAA4239-4241
TGA4239-4241
TAG4242-4244
TAA4245-4247
TAA4248-4250
TAG4251-4253
TAA4254-4256
TAG4254-4256
TGA4254-4256
TAG4257-4259
TAG4260-4262
TAA4263-4265
TAG4263-4265
TGA4263-4265
TAA4266-4268
TAG4266-4268
TGA4266-4268
TAG4269-4271
TAA4275-4277
TAG4275-4277
TGA4275-4277
TAA4278-4280
TAG4278-4280
TGA4278-4280
TAA4284-4286
TGA4284-4286
TAG4287-4289
TAA4290-4292
TAA4293-4295
TAG4293-4295
TGA4293-4295
TAA4296-4298
TAA4299-4301
TAA4308-4310
TGA4308-4310
TAG4311-4313
TAA4314-4316
TAA4317-4319
TAA4326-4328
TAA4332-4334
TGA4332-4334
TAA4335-4337
TAG4347-4349
TAA4350-4352
TAG4353-4355
TAG4356-4358
TAG4362-4364
TAG4365-4367
TAG4368-4370
TAA4371-4373
TAG4371-4373
TGA4371-4373
TAG4374-4376
TAG4383-4385
TAA4386-4388
TGA4386-4388
TAA4395-4397
TAG4395-4397
TGA4395-4397
TAA4398-4400
TAA4401-4403
TAA4404-4406
TAG4404-4406
TGA4404-4406
TAA4410-4412
TAG4410-4412
TGA4410-4412
TAA4413-4415
TAA4416-4418
TAA4419-4421
TAG4422-4424
TAA4425-4427
TAG4425-4427
TGA4425-4427
TAA4428-4430
TAG4428-4430
TGA4428-4430
TAG4431-4433
TAG4437-4439
TAG4440-4442
TAA4449-4451
TAG4455-4457
TAA4461-4463
TAA4464-4466
TAA4467-4469
TAG4467-4469
TGA4467-4469
TAG4470-4472
TAA4473-4475
TAG4476-4478
TAG4479-4481
TAA4482-4484
TAG4482-4484
TGA4482-4484
TAA4485-4487
TAA4488-4490
TAG4488-4490
TGA4488-4490
TAA4494-4496
TGA4494-4496
TAA4497-4499
TAA4500-4502
TAG4503-4505
TAA4506-4508
TAG4506-4508
TGA4506-4508
TAA4512-4514
TAA4515-4517
TAA4521-4523
TGA4521-4523
TAG4527-4529
TAG4530-4532
TAA4536-4538
TAG4536-4538
TGA4536-4538
TAG4539-4541
TAG4542-4544
TAA4545-4547
TAA4548-4550
TAG4548-4550
TGA4548-4550
TAG4551-4553
TAG4554-4556
TAA4557-4559
TAG4557-4559
TGA4557-4559
TAG4560-4562
TAG4563-4565
TAA4566-4568
TAA4569-4571
TAG4569-4571
TGA4569-4571
TAA4572-4574
TAA4575-4577
TAA4578-4580
TAA4581-4583
TAA4584-4586
TAG4587-4589
TAG4593-4595
TAG4596-4598
TAG4599-4601
TAA4602-4604
TAA4605-4607
TAG4605-4607
TGA4605-4607
TAA4608-4610
TAG4608-4610
TGA4608-4610
TAA4614-4616
TAG4614-4616
TGA4614-4616
TAA4617-4619
TAA4620-4622
TAG4620-4622
TGA4620-4622
TAA4626-4628
TAG4626-4628
TGA4626-4628
TAA4629-4631
TAG4629-4631
TGA4629-4631
TAG4632-4634
TAG4635-4637
TAA4638-4640
TAA4641-4643
TAG4641-4643
TGA4641-4643
TAA4644-4646
TAG4644-4646
TGA4644-4646
TAA4647-4649
TAA4653-4655
TAA4656-4658
TAG4656-4658
TGA4656-4658
TAA4659-4661
TAG4659-4661
TGA4659-4661
TAG4662-4664
TAA4665-4667
TGA4665-4667
TAA4674-4676
TGA4674-4676
TAA4677-4679
TAA4680-4682
TAA4683-4685
TAG4683-4685
TGA4683-4685
TAA4689-4691
TAG4689-4691
TGA4689-4691
TAG4695-4697
TAG4698-4700
TAA4704-4706
TAA4707-4709
TAG4710-4712
TAG4713-4715
TAG4716-4718
TAG4719-4721
TAG4722-4724
TAG4725-4727
TAG4737-4739
TAG4740-4742
TAA4743-4745
TAG4743-4745
TGA4743-4745
TAG4746-4748
TAG4755-4757
TAA4758-4760
TAG4758-4760
TGA4758-4760
TAA4761-4763
TGA4761-4763
TAG4764-4766
TAA4767-4769
TAA4770-4772
TAG4770-4772
TGA4770-4772
TAA4773-4775
TAG4773-4775
TGA4773-4775
TAA4776-4778
TAG4776-4778
TGA4776-4778
TAA4782-4784
TAG4788-4790
TAG4794-4796
TAG4797-4799
TAA4800-4802
TAA4806-4808
TAG4806-4808
TGA4806-4808
TAG4812-4814
TAA4815-4817
TAG4815-4817
TGA4815-4817
TAG4818-4820
TAA4821-4823
TAA4824-4826
TAA4830-4832
TAG4830-4832
TGA4830-4832
TAA4833-4835
TAG4833-4835
TGA4833-4835
TAG4836-4838
TAG4839-4841
TAG4845-4847
TAA4848-4850
TAG4848-4850
TGA4848-4850
TAG4851-4853
TAA4857-4859
TAG4857-4859
TGA4857-4859
TAG4860-4862
TAG4863-4865
TAA4866-4868
TAG4869-4871
TAG4875-4877
TAA4878-4880
TAG4878-4880
TGA4878-4880
TAG4881-4883
TAG4887-4889
TAG4890-4892
TAA4893-4895
TAA4896-4898
TAA4902-4904
TAG4902-4904
TGA4902-4904
TAA4905-4907
TAG4905-4907
TGA4905-4907
TAA4908-4910
TAA4911-4913
TAG4911-4913
TGA4911-4913
TAG4914-4916
TAA4917-4919
TAG4917-4919
TGA4917-4919
TAA4920-4922
TGA4920-4922
TAG4923-4925
TAA4932-4934
TAG4932-4934
TGA4932-4934
TAA4935-4937
TGA4935-4937
TAG4938-4940
TAG4941-4943
TAG4944-4946
TAA4947-4949
TAG4947-4949
TGA4947-4949
TAG4950-4952
TAG4956-4958
TAG4962-4964
TAG4965-4967
TAG4968-4970
TAA4974-4976
TAA4977-4979
TAG4980-4982
TAA4983-4985
TAG4986-4988
TAG4989-4991
TAA4992-4994
TAG4992-4994
TGA4992-4994
TAA4995-4997
TAG4998-5000
TAA5001-5003
TAG5004-5006
TAG5007-5009
TAA5010-5012
TAG5013-5015
TAA5016-5018
TGA5016-5018
TAA5019-5021
TAG5022-5024
TAA5025-5027
TGA5025-5027
TAG5031-5033
TAA5034-5036
TAG5034-5036
TGA5034-5036
TAA5037-5039
TGA5037-5039
TAG5040-5042
TAA5043-5045
TAG5043-5045
TGA5043-5045
TAA5046-5048
TAG5049-5051
TAA5052-5054
TAG5055-5057
TAA5058-5060
TAA5061-5063
TAA5064-5066
TAA5067-5069
TAA5070-5072
TAG5070-5072
TGA5070-5072
TAA5073-5075
TAG5076-5078
TGA5091-5093
|
[0047] Insertion mutant BRCA1 genes containing a truncating mutation may also be defined as having the sequence 5′ R1-R2-R3 3′; where R1 is the wild type BRCA1 DNA sequence from nucleotide number 120 to X; R2 is 3n+1 or 3n+2 nucleotides of any sequence where n is an integer of zero or greater; R3 contains the wild type BRCA1 DNA sequence of nucleotide number X+1 to 5711, and where X=123 to 5707.
[0048] Alternatively, an insertion mutant BRCA1 gene or fragment thereof containing a truncating mutation is capable of specifically hybridizing to an oligonucleotide probe being at least 9 nucleotides in length and having the sequence 5′ R1-R2-R3 3′; where R1 contains at its 3′ end three nucleotides complementary to nucleotide numbers X-2, X-1 and X of the wild-type BRCA1 gene; R2=an oligonucleotide having Y nucleotides of any sequence; R3 contains at its 5′ end three nucleotides complementary to nucleotide numbers X+1, X+2 and X+3 of the wild type BRCA1 gene; where Y is 3n+1 or 3n+2 where n is an integer of zero to 1861, and where X=122 to 5707.
[0049] It should be recognized that for TABLES 4-7, each line indicating a stop codon represents several different mutations, each one of which creates the same truncating stop codon. For example, in TABLE 4, the line indicated by TGA stop codon at 207-209 represents twenty-four different mutations, 185delA, 186delG, 187delA, 188delG, 189delT, 190delG, 191 delT, 192delC, 193delC, 194delC, 195delA, 196delT, 197delC, 198delT, 199delG, 200delT, 201delC, 202delT, 203delG, 204delG, 205delA, 206delG, 207delT, 208delT. The corresponding mutations for each line in each table are easily determined by anyone of very modest skill in the art knowing only the BRCA1 sequence such as given SEQ ID NO:1 and TABLES 4-7.
[0050] A substantially complete listing of all of the mutations, their sites etc. of the present invention is described in Appendix A, B, C, D and E. Likewise, the choice of mutations and corresponding oligonucleotides may be chosen from and determined by the list in Appendix A-E.
[0051] An alternative method for defining the mutations of the present invention is by their nucleotide numbers. Mutant BRCA1 genes having nonsense mutations may be described as having the nucleotide sequence R4-R5-R6, where R4 is nucleotide numbers 120 to 3×of the BRCA1 gene; R5 is TAG, TAA or TGA; and R6 is nucleotide numbers 3X+4 to 5711 of the BRCA1 gene; where X is 41 to 1903.
[0052] Mutant BRCA1 genes having deletion mutations may be described as having the nucleotide sequence R4-R5, where R4 is nucleotide numbers 120 to Y of the BRCA1 gene; and R5 is nucleotide numbers Y+Z+1 to 5711 of the BRCA1 gene; where Y is 124 to 5707, and Z is 3n+1 or 3n+2 where N is an integer of zero or greater.
[0053] Mutant BRCA1 genes having insertion mutations may be described as having the nucleotide sequence R4-R5-R6, where R4 is nucleotide numbers 120 to Y of the BRCA1 gene; R5 is 3n+1 or 3n+2 nucleotides of any sequence where n is an integer of zero or greater; and R6 is nucleotides Y+1 to 5711; wherein Y is from 122 to 5707.
[0054] While the present invention encompasses genes with numerous mutations in the BRCA1 gene, applicant reserves the right to lessen the scope and number of mutations to be included in the present invention.
[0055] It should be recognized that mutations causing truncations which form a smaller protein molecule than mutations causing truncations of known mutations associated with cancer are expected to also be associated with cancer. Removing additional amino acids from a non-function protein is also believed to result in a non-functional protein.
[0056] Useful oligonucleotides according to the present invention are those which will specifically hybridize to BRCA1 sequences in the region of the mutations. The oligonucleotides of the present invention are preferably “biologically active” with respect to structural attributes, such as the capacity of a nucleic acid to hybridize to another nucleic acid molecule or to be used by a polymerase as a primer. Alternatively, such attributes may be catalytic, and thus involve the capacity of the agent to mediate a chemical reaction or response. Typically these oligonucleotides are about 13 to 27 nucleotides in length (longer for large insertions) and have the nucleotide sequence corresponding to the region of the mutations at their respective nucleotide locations on the BRCA1 sequence. Such molecules can be labeled, according to any technique known in the art, such as with radiolabels, fluorescent labels, enzymatic labels, sequence tags, biotin, other ligands, etc.
[0057] According to another aspect of the invention, the oligonucleotides contain one or more of the specific mutations constituting DNA probes. Generally it is preferred for each DNA probe to encompass only one mutation. Such molecules may be labeled and can be used as allele-specific oligonucleotide probes to detect the mutation of interest.
[0058] Alternatively, the oligonucleotide may be one primer of a PCR primer pair, which upon annealing, will amplify a product. In the situation wherein the target DNA sample does not contain a sequence complementary to the oligonucleotide, annealing does not occur, and thus amplification of a product does not occur.
[0059] Polynucleotide-containing biological samples, such as blood, can be tested to determine whether the BRCA1 gene contains one of the specific mutations listed above. To amplify the BRCA1 gene, one may use PCR using primers which hybridize to the ends of the exons or to the introns flanking the exons. To detect mutations in the introns, primers amplifying the introns, especially the regions adjacent to the exons (particularly the splice site regions), may be used. Examples of suitable primers are given in Friedman et al., Nat. Genetics, 8:399-404 (1994).
[0060] Amplification may also be performed by a number of other techniques, such as by cloning the gene or gene fragments, and linking the BRCA1 gene or fragments thereof in the sample to a vector. “Shot gun” cloning is particularly preferred. For the purposes of this to application, a vector may be any polynucleotide containing system which induces replication such as a plasmid, cosmid, virus, transposon, or portions thereof.
[0061] In one embodiment of the invention, the BRCA1 gene or A DNA fragment complementary to its coding sequence is ligated to a vector which is placed inside a suitable host cell or other system for replicating the vector. After replication, the BRCA1 gene or its fragments are then separated from the vector, e.g. by restriction endonuclease digestion, to amplify the copy number of BRCA1 in a particular preparation.
[0062] Probes are synthesized to specifically hybridize to any of the list of mutations in TABLES 3-7. On each side of the mutation, the probe overlaps at least 3 nucleotides so that the probes specifically hybridize to a DNA with the mutation. Likewise for probes specific to the mutation site with a sequence complementary for the wild type DNA sequence. By using either or both (if the sample is heterozygous) of these probes which differentially hybridize to mutant and wild-type BRCA1 sequences, one can determine the presence or absence of a mutant BRCA1 gene. Probes which hybridize to the complementary strand of the target DNA may also be used in the same manner.
[0063] A pair of isolated allele specific oligonucleotide probes are provided for the mutation 185delAG.
6|
wild-type5′-AAT CTT AGA GTG TCC CA-3′,SEQ ID NO:3
|
mutant5′-ATC TTA GTG TCC CAC CT-3′,SEQ ID NO:4
[0064] SEQ ID NO:3 preferentially may be hybridized to a target BRCA1 sequence under conditions where this probe anneals with a wild type BRCA1 gene or gene fragments, whereas SEQ ID NO:4 preferentially may be hybridized to a target BRCA1 sequence under conditions where this probe anneals with BRCA1 gene or gene fragments containing the 185delAG mutation.
[0065] A pair of isolated allele specific oligonucleotide probes are provided for the mutation 1136insA.
7|
wild-type5′-CAG AAA AAA AGG TAG AT-3′,SEQ ID NO:5
|
mutant5′-CAG AAA AAA AAG GTA GA-3′,SEQ ID NO:6
[0066] SEQ ID NO:5 preferentially may be hybridized to a target BRCA1 sequence under conditions where this probe anneals with a wild type BRCA1 gene or gene fragments, whereas SEQ ID NO:6 preferentially may be hybridized to a target BRCA1 sequence under conditions where this probe anneals with BRCA1 gene or gene fragments containing the 1136insA mutation.
[0067] A pair of isolated allele specific oligonucleotide probes are provided for the mutation 5382insC.
8|
wild-type5′-AGA GAA TCC CAG GAC AG-3′,SEQ ID NO:7
|
mutant5′-AGA GAA TCC CCA GGA CA-3′,SEQ ID NO:8
[0068] SEQ ID NO:9 preferentially may be hybridized to a target BRCA1 sequence under conditions where this probe anneals with a wild type BRCA1 gene or gene fragments, whereas SEQ ID NO:10 preferentially may be hybridized to a target BRCA1 sequence under conditions where this probe anneals with BRCA1 gene or gene fragments containing the 5382insC mutation.
[0069] A pair of isolated allele specific oligonucleotide probes are provided for the mutation C4446T.
9|
wild-type
5′-AGG ACC TGC GAA ATC CA-3′,SEQ ID NO:9
|
mutant
5′-AGG ACC TGT GAA ATC CA-3′,SEQ ID NO:10
[0070] SEQ ID NO:11 preferentially may be hybridized to a target BRCA1 sequence under conditions where this probe anneals with a wild type BRCA1 gene or gene fragments, whereas SEQ ID NO:12 preferentially may be hybridized to a target BRCA1 sequence under conditions where this probe anneals with BRCA1 gene or gene fragments containing the C4446T mutation. Comparable probes can be prepared for each mutation of the present invention.
[0071] These allele specific oligonucleotides are useful in diagnosis of a subject at risk of having cancer. The allele specific oligonucleotides hybridize with a target polynucleotide sequence containing the mutations listed in TABLES 3-7. The probes having a sequence to naturally occurring (wild-type) BRCA1 hybridize preferentially to the wild type sequence and are useful, for example, as controls. The probes complementary to the sequences containing the mutations listed in TABLES 3-7 are designed to hybridize preferentially to the sequences carrying the specified mutant sequence.
[0072] The primers of the invention embrace oligonucleotides of sufficient length and appropriate sequence so as to provide initiation of polymerization on a significant number of nucleic acids in the mutated locus. Examples of preferred sequences for the primers of the present invention are given in the references cited above.
[0073] Environmental conditions conducive to synthesis of extension products include the presence of nucleoside triphosphates, an agent for polymerization, such as DNA polymerase, and suitable conditions such as temperature, ion composition, ionic strength and pH. The primer is preferably single stranded for maximum efficiency in amplification, but may be double stranded. If double stranded, the primer is preferably first treated to separate its strands before being used to prepare extension products. The primer must be sufficiently long to specifically prime the synthesis of extension products in the presence of the inducing agent for polymerization. The exact length of primer will depend on many factors, including temperature, buffer, and nucleotide composition. The oligonucleotide primer typically contains 13-20 or more nucleotides, although it may contain fewer nucleotides.
[0074] Primers of the invention are designed to be “substantially” complementary to each strand of the genomic locus to be amplified. This means that the primers must be sufficiently complementary to hybridize with their respective strands under conditions which allow the agent for polymerization to perform a polymerase-mediated primer extension reaction. In other words, the primers should have sufficient complementarity with the 5′ and 3′ sequences flanking the mutation to hybridize therewith and permit amplification of the genomic locus. “Substantially” the same as it refers to oligonucleotide sequences which have the functional ability to hybridize or anneal with sufficiently stringent conditions to generate sufficient specificity to distinguish between the presence or absence of the mutation. This is measurable by the temperature of melting being sufficiently different to permit easy identification of whether the oligonucleotide is binding to the normal or mutant BRCA1 gene sequence. Conventional stringency conditions are described, for example, by Sambrook et al, Molecular Cloning, a laboratory Manual, 2nd Edition, Cold Spring Harbor Press, Cold Spring Harbor, N.Y. (1989), more recent editions and Haymes, et al., Nucleic Acid Hybridization, A Practical Approach, IRL Press, Washington, D.C. (1985).
[0075] Oligonucleotide primers of the invention are employed in the amplification process, which is an enzymatic chain reaction that preferably produces exponential quantities of mutated locus relative to the number of reaction steps involved. Typically, one primer is complementary to the negative (−) strand of the mutated locus and the other is complementary to the positive (+) strand. Annealing the primers to denatured nucleic acid is generally followed by extension with an enzyme, such as the large fragment of DNA polymerase I (Klenow) and nucleotides, and results in newly synthesized + and − strands containing the target mutated locus sequence. Because these newly synthesized sequences are also templates, repeated cycles of denaturing, primer annealing, and extension results in exponential production of the region (i.e., the target mutated locus sequence) defined by the primers. The product of the chain reaction is a discreet nucleic acid duplex with termini corresponding to the ends of the specific primers employed.
[0076] The oligonucleotide primers of the invention may be prepared using any suitable method, such as conventional phosphotriester and phosphodiester methods or automated embodiments thereof. In one such automated embodiment, diethylphosphoramidites are used as starting materials and may be synthesized as described by Beaucage, et al., Tetrahedron Letters, 22:1859-1862, (1981). One method for synthesizing oligonucleotides on a modified solid support is described in U.S. Pat. No. 4,458,066.
[0077] Any nucleic acid specimen, in purified or non-purified form, can be utilized as the is starting nucleic acid or acids, providing it contains, or is suspected of containing, the specific nucleic acid sequence containing the mutated locus. Thus, the process may amplify, for example, DNA or RNA, including messenger RNA, wherein DNA or RNA may be single stranded or double stranded. In the event that RNA is to be used as a template, enzymes, and/or conditions optimal for reverse transcribing the template to DNA would preferably be utilized. In addition, a DNA-RNA hybrid which contains one strand of each may be utilized. A mixture of nucleic acids may also be employed, or the nucleic acids produced in a previous amplification reaction herein, using the same or different primers may be so utilized. The specific nucleic acid sequence to be amplified, i.e., the mutated locus, may be a fraction of a larger molecule or can. be present initially as a discrete molecule, so that the specific sequence constitutes the entire nucleic acid. It is not necessary that the sequence to be amplified be present initially in a pure form; it may be a minor fraction of a complex mixture, such as contained in whole human DNA.
[0078] DNA utilized herein may be extracted from a body sample, such as blood, tissue material and the like by a variety of techniques such as that described by Maniatis, et. al. in Molecular Cloning: A Laboratory Manual, Cold Spring Harbor, N.Y., p. 280-281, 1982). If the extracted sample is impure, it may be treated before amplification with an amount of a reagent effective to open the cells, or animal cell membranes of the sample, and to expose and/or separate the strand(s) of the nucleic acid(s). This lysing and nucleic acid denaturing step to expose and separate the strands will allow amplification to occur much more readily.
[0079] The deoxyribonucleotide triphosphates dATP, dCTP, dGTP, and dTTP are added to the synthesis mixture, either separately or together with the primers, in adequate amounts and the resulting solution is heated to about 90′-100° C. from about 1 to 10 minutes, preferably from 1 to 4 minutes. This is sufficient to denature any double strands. After this heating period, the solution is allowed to cool at a rate which is preferable for the primer hybridization. To the cooled mixture is added an appropriate agent for effecting the primer extension reaction (called herein agent for polymerization), and the reaction is allowed to occur under conditions known in the art. The agent for polymerization may also be added together with the other reagents if it is heat stable. This synthesis (or amplification) reaction may occur at room temperature up to a temperature above which the agent for polymerization no longer functions. Thus, for example, if DNA polymerase is used as the agent, the temperature is generally no greater than about 40° C. Thermostable DNA polymerases, such as Taq polymerase, may function at a higher temperature.
[0080] The agent for polymerization may bge any compound or system which will function to accomplish the synthesis of primer extension products, including enzymes. Suitable enzymes for this purpose include, for example, E. coli DNA polymerase I, Klenow fragment of E. coli DNA polymerase, polymerase muteins, reverse transcriptase, other enzymes, including heat-stable enzymes (i e., those enzymes which perform primer extension after being subjected to temperatures sufficiently elevated to cause denaturation), such as Taq polymerase. The suitable enzyme will facilitate combination of the nucleotides in the proper manner to form the primer extension products which are complementary to each nucleic acid strand. Generally, the synthesis will be initiated at the 3′ end of each primer and proceed in the 5′ direction along the template strand, until synthesis terminates, producing molecules of different lengths.
[0081] The newly synthesized strand and its complementary nucleic acid strand will form a double-stranded molecule under hybridizing conditions described above and this hybrid is used in subsequent steps of the process. In the next step, the newly synthesized double-stranded molecule is subjected to denaturing conditions using any of the procedures described above to provide single-stranded molecules.
[0082] The steps of denaturing, annealing, and extension product synthesis can be repeated as often as needed to amplify the target nucleic acid sequence to the extent necessary for detection. The amount of the specific nucleic acid sequence produced will accumulate in an exponential fashion (PCR. A Practical Approach, ILR Press, Eds. M. J. McPherson, P. Quirke, and G. R; Taylor, 1992).
[0083] The amplification products may be detected by Southern blot analysis using non-isotopic detection methods. In such a process, for example, a small sample of DNA containing a very low level of the nucleic acid sequence of the polymorphic locus is amplified, and analyzed via a Southern blotting technique or similarly, using dot blot analysis. The use of non-radioactive probes or labels is facilitated by the high level of the amplified signal. Alternatively, probes used to detect the amplified products can be directly or indirectly detectably labeled, for example, with a radioisotope, a fluorescent compound, a bioluminescent compound, a chemiluminescent compound, a metal chelator or an enzyme. Those of ordinary skill in the art will know of other suitable labels for binding to the probe, or will be able to ascertain such, using routine experimentation. In the preferred embodiment, the amplification products are determinable by separating the mixture on an agarose gel containing ethidium bromide which causes DNA to be fluorescent.
[0084] Sequences amplified by the methods of the invention can be further evaluated, detected, cloned, sequenced, and the like, either in solution or after binding to a solid support, by any method usually applied to the detection of a specific DNA sequence such as PCR, oligomer restriction (Saiki, et.al., Bio/Technology, 3:1008-1012, (1985)), allele-specific oligonucleotide (ASO) probe analysis (Conner, et. al., Proc. Natl. Acad. Sci. U.S.A., 80:278, (1983)), oligonucleotide ligation assays (OLAs) (Landgren, et. al., Science, 241:1007, (1988)), and the like. Molecular techniques for DNA analysis have been reviewed (Landgren, et. al., Science, 242:229-237, (1988)).
[0085] Preferably, the method of amplifying is by PCR, as described herein and as is commonly used by those of ordinary skill in the art. Alternative methods of amplification have been described and can also be employed as long as the BRCA1 locus amplified by PCR using primers of the invention is similarly amplified by the alternative means. Such alternative amplification systems include but are not limited to self-sustained sequence replication, which begins with a short sequence of RNA of interest and a T7 promoter. Reverse transcriptase copies the RNA into cDNA and degrades the RNA, followed by reverse transcriptase polymerizing a second strand of DNA. Another nucleic acid amplification technique is nucleic acid sequence-based amplification (NASBA) which uses reverse transcription and T7 RNA polymerase and incorporates two primers to target its cycling scheme. NASBA can begin with either DNA or RNA and finish with either, and amplifies to 108 copies within 60 to 90 minutes. Alternatively, nucleic acid can be amplified by ligation activated transcription (LAT). LAT works from a single-stranded template with a single primer that is partially single-stranded and partially double-stranded. Amplification is initiated by ligating a cDNA to the promoter oligonucleotide and within a few hours, amplification is 108 to 109 fold. The QB replicase system can be utilized by attaching an RNA sequence called MDV-1 to RNA complementary to a DNA sequence of interest. Upon mixing with a sample, the hybrid RNA finds its complement among the specimen's mRNAs and binds, activating the replicase to copy the tag-along sequence of interest. Another nucleic acid amplification technique, ligase chain reaction (LCR), works by using two differently labeled halves of a sequence of interest which are covalently bonded by ligase in the presence of the contiguous sequence in a sample, forming a new target. The repair chain reaction (RCR) nucleic acid amplification technique uses two complementary and target-specific oligonucleotide probe pairs, thermostable polymerase and ligase, and DNA. nucleotides to geometrically amplify targeted sequences. A 2-base gap separates the oligonucleotide probe pairs, and the RCR fills and joins the gap, mimicking normal DNA repair. Nucleic acid amplification by strand displacement activation (SDA) typically utilizes a short primer containing a recognition site for Hinc II with short overhang on the 5′ end which binds to target DNA. A DNA polymerase fills in the part of the primer opposite the overhang with sulfur-containing adenine analogs. Hinc II is added but only cuts the unmodified DNA strand. A DNA polymerase that lacks 5′ exonuclease activity enters at the cite of the nick and begins to polymerize, displacing the initial primer strand downstream and building a new one which serves as more primer. SDA produces greater than 107-fold amplification in 2 hours at 37° C. Unlike PCR and LCR, SDA does not require instrumented Temperature cycling. Another modification of the PCR is the TAQMAN amplification (PERKIN ELMER) where an oligonucleotide is labeled with a fluorescent and a quencher. This oligonucleotide anneals to the target between the primers so that when one primer is extended, the 5′ nuclease activity of Taq cleaves of the fluorescent label which is then qualitatively detected and quantitatively determined to correspond to the copy number of amplification. Although PCR is the preferred method of amplification in the invention, other methods such as the above can also be used to amplify the BRCA1 locus in accordance with the present invention.
[0086] To sequence the coding region of the BRCA1 gene, each exon is amplified separately using a pair of PCR primers and the resulting PCR products are sequenced in the forward and reverse directions. Any combination of the primers mentioned above which encompass the entire BRCA1 coding region may be used.
[0087] An alternative method for determining whether a truncating mutation is present is the Protein Truncation Assay (PTA). Protein truncation assay enables us to identify three types mutations in a truncated BRCA1 protein: nonsense mutation, frame shift mutation, and splice-site mutations. Nonsense mutations (see TABLE 3) result when a single base change in a codon creates a signal to terminate the production of the protein. These signals or stop codons come in three types: TGA, TAA, TAG. Frame shift mutations (see TABLES 4-7) occur when bases are added or deleted from the normal sequence. Thus, disrupting the reading frame of the protein and causing a stop codon downstream from the alteration. Splice-site mutations occurring at the intron/exon boundaries have the potential of causing the deletion of an entire exon. Examples of protein truncation assays for BRCA1 is mentioned in Furnari et al, Proceedings of the National Academy of Sciences U.S.A., 96: p. 12479-12484 (11-1997) and Tashiro et al, Cancer Research, 57: 3935-3940 (1997).
[0088] Preferably, the Polymerase Chain Reaction (PCR) is performed to amplify the BRCA1 gene copy number. The amplified BRCA1 gene is transcribed and translated in vitro. Detection of truncated proteins is made possible by the use of polyacrylamide gel electrophoresis. The migration of the mutant band on the gel allows for size targeting of the alteration; thus reducing confirmatory sequencing to a minimum.
[0089] In another embodiment of the invention, a method is provided for diagnosing a subject having a predisposition or higher susceptibility to cancer, or other pathology associated with BRCA1 mutations, comprising sequencing a target nucleic acid of a sample from a subject by dideoxy sequencing following amplification of the target nucleic acid. In such an embodiment, one does not even need to use any of the oligonucleotides, either primers or probes as described herein. The BRCA1 gene, or fragments thereof, may be directly cloned and then sequenced. (such as by dideoxy methods) to determine the presence of absence of a mutation. In such a situation, one need only compare the sequence obtained to a naturally occurring (wild type) BRCA1 gene, or a portion thereof.
[0090] In another embodiment of the invention a method is provided for diagnosing a subject having a predisposition or higher susceptibility to cancer comprising contacting a target nucleic acid of a sample from a subject with a reagent that detects the presence of one of the mutations of the present invention and detecting the mutation.
[0091] In yet another embodiment of the invention, a method is provided for determining whether either gene therapy or protein therapy (with normal BRCA1 protein) is appropriate for the prevention or treatment of cancers and other BRCA1 related syndromes. For this method, BRCA1 mutations are assayed for in a biological sample for BRCA1 mutations. When present, the use of gene therapy or protein therapy to prevent cancer in the individual is appropriate. Likewise when BRCA1 mutations are found in tumor cells from a patient, gene therapy or protein therapy is appropriate for that individual.
[0092] In another embodiment of the invention, a method and reagents are provided for repairing the gene mutation in at least some cells by applying an oligomer comprising the sequence of the wild-type probes to repair the individual's genome by triple strand hybridization. See U.S. Pat. Nos. 5,650,316 and 5,624,803 for example. This is a form of gene therapy to correct the defect in either apparently normal tissue or in an active tumor. Gene repair may also be performed on excised tumor cells which may be helpful in determining the preferred therapy to be used, particularly the reagents used for gene therapy. Other forms of gene therapy, such as providing a complete copy of a normal BRCA1 gene may also be used. Some gene therapy techniques specific to BRCA1 are discussed in Furnari et al, Proceedings of the National Academy of Sciences. U.S.A., 96: p. 12479-12484 (11-1997).
[0093] Since the method of the present invention may be applied to detect a mutant BRCA1 gene in a fetus, therapeutic or preventative measures may be possible. Screening of eggs or sperm from heterozygous individuals may permit one to selectively conceive a zygote without the mutant BRCA1 gene since only one half of the sperm or eggs will contain the mutation.
[0094] In another embodiment of the invention a method is provided for characterizing a tumor. Histologic type, morphologic grade, differences between inherited and sporadic cancer appear to be distinguished. One method comprises sequencing the target nucleic acid isolated from the tumor or other biological sample to determine if the mutation is present. Sanger, et al., J. Mol. Biol. 142:1617 (1980).
[0095] Characterizing a tumor as having originated from an inherited gene, a known or suspected cause, or a sporadic cancer gene may be clinically significant as the prevalence of bilateral breast cancer is higher in individuals with a known mutation in a tumor suppressor gene than in sporadic cases. Weber, Scientific American, January-February p. 12-21 (1996). The tumor may be classified based on tissue taken from the tumor itself or from a non-tumor site which contains DNA.
[0096] Yet another embodiment of the present invention is an isolated mutant BRCA1 DNA sequence which may be the entire sequence, an intron, an exon thereof or a fragment or combination thereof. The BRCA1 DNA may be hybridized to an oligonucleotide probe, primer or polynucleotide and still be considered “isolated”. The DNA sequence must contain at least one mutation from the list provided in TABLES 3-7. Preferably, the isolated DNA sequence contains a sequence complementary to at least one of the oligonucleotides complementary to the mutations listed in TABLES 3-7. However, the DNA sequence may contain the DNA sequence of these oligonucleotides. This sequence alone has usefulness or after cloning and expression to determine suitable treatments to prevent formation of a tumor, prevent transmission of the mutant gene to offspring or to decide other prophylactic, diagnostic and treatment protocols. The isolated DNA sequence may also be used for drug design by protein replacement, protein mimetics, screening known and unknown compounds, anti-idiotype antibodies to the BRCA1 active site, for the preparation of an immunogen or vaccine and determining appropriate gene therapy to counter the pathology associated with the mutant BRCA1 gene. For diagnostic purposes, knowing the mutant BRCA1 sequence for comparison purposes is the critical step in diagnosis.
[0097] Another method comprises contacting a target nucleic acid of a sample from a subject with a reagent that detects the presence of the mutation and detecting the mutation. A number of hybridization methods are well known to those skilled in the art. Many of them are useful in carrying out the invention.
[0098] The materials for use in the method of the invention are also ideally suited for the preparation of a diagnostic kit. Such a kit may comprise a carrier means being compartmentalized to receive in close confinement one or more container means such as vials, tubes, and the like, each of the container means comprising one or more of the separate elements to be used in the method. For example, one of the container means may comprise means for amplifying BRCA1 DNA, said means comprising the necessary enzyme(s) and oligonucleotide primers for amplifying said target DNA from the subject. Another container may contain oligonucleotide probes for detecting the presence or absence of a mutation.
[0099] The oligonucleotide primers include primers having a sequences referenced above or primer sequences substantially complementary or substantially homologous thereto. Other primers flanking the BRCA1 locus or a region containing one of the mutation sites may be used. The target flanking 5′ and 3′ polynucleotide sequence include other oligonucleotide primers for amplifying the BRCA1 locus will be known or readily ascertainable to those of skill in the art. See the GENBANK sequences mentioned above where flanking sequences are given.
[0100] Oligonucleotide probes including probes having substantially the sequence complementary to the mutations listed in TABLES 3-7 or complementary sequences are useful. Other oligonucleotide probes which hybridize to one or more of the BRCA1 mutation sites and sequences substantially complementary or homologous thereto may be used. Other oligonucleotide probes for detecting the mutations will be known or readily ascertainable to those of skill in the art.
[0101] The following definitions are provided for the purpose of understanding this invention.
[0102] The term “primer” as used herein refers to a sequence comprising two or more deoxyribonucleotides or ribonucleotides, preferably more than three, and more preferably more than eight and most preferably at least 20 nucleotides of the BRCA1 gene wherein the sequence corresponds to a sequence flanking one of the mutations or wild type sequences of BRCA1 corresponding to the mutation sites. Primers may be used to initiate DNA synthesis via the PCR. Oligonucleotides of the present invention can be used for primer hybridization and others will be known or readily ascertainable to those of skill in the art.
[0103] The term “substantially complementary to” or “substantially the sequence” refers to sequences which hybridize to the sequences provided under stringent conditions and/or sequences having sufficient homology with, such that the allele specific oligonucleotides of the invention hybridize to the sequence.
[0104] “Isolated” as used herein refers to being substantially free of other proteins, lipids, carbohydrates or other materials with which they may be associated. It also refers to being substantially free of polynucleic acids being covalently bound thereto. A DNA may be hybridized to another DNA and still be considered “isolated”, such as being hybridized to a solid phase bound or labeled oligonucleotide probe. Such association is typically either in cellular material or in a synthesis medium.
[0105] “Biological sample” refers to a polynucleotide containing sample originally from a biological source. The sample may be from a living, dead, paraffin-embedded tumor specimen or even archeological source from a variety of tissues and cells. Examples include: body fluid [blood (leukocytes), urine (epithelial cells), saliva, cervical and vaginal secretions, milk . . . ] skin, hair roots/follicle, mucus membrane (e.g. buccal or tongue cell scrapings), cervicovaginal cells (from PAP smear, etc.) internal tissue (normal or tumor), chorionic villus tissue, amniotic cells, placental cells, fetal cells, cord blood, sperm or egg.
[0106] “Coding sequence” or “DNA coding sequence” refers to those portions of a gene which, taken together, code for a peptide (protein), or for which the nucleic acid itself has function. The DNA coding sequence generally encodes the “complete” protein which is one which has the same biological activity as the naturally occurring BRCA1 protein.
[0107] A “target polynucleotide” refers to the nucleotide sequence of interest e.g., the BRCA1 encoding polynucleotide. The nucleotides may be deoxyribonucleotides, ribonucleotides, acyclic derivatives and other functional equivalents such as spacer molecules (inosine, the sugar moiety without a base, etc.) and other molecules which are incorporated by a RNA polymerase, a DNA polymerase or a reverse transcriptase.
[0108] “Consensus” means the most commonly occurring in the population.
[0109] As used herein, a nucleic acid molecule is the “complement” of another nucleic acid molecule if it exhibits complete complementarity. As used herein, molecules are said to exhibit a “complete complementarity” when every nucleotide of one of the molecules is complementary to a nucleotide of the other. Two molecules are said to be “substantially complementary” if they can hybridize to one another with sufficient stability to permit them to remain annealed to one another under at least conventional “high-stringency” conditions. Similarly, the molecules are said to be “partially complementary” if they can hybridize to one another with sufficient stability to permit them to remain annealed to one another under conventional “low-stringency” conditions. Conventional stringency conditions are described, for example, by Sambrook, J., et al., (In: Molecular Cloning, a Laboratory Manual, 2nd Edition, Cold Spring Harbor Press, Cold Spring Harbor, N.Y. (1989)), and by Haymes, B. D., et al. (In: Nucleic Acid Hybridization, A Practical Approach, IRL Press, Washington, D.C. (1985)), both herein incorporated by reference).
[0110] As used herein, an oligonucleotide is said to be capable of “specifically hybridizing” to a complementary target polynucleotide if the two molecules are capable of forming an anti-parallel, double-stranded nucleic acid structure under stringent hybridization conditions, whereas the oligonucleotide is substantially unable to form such a structure when incubated under the same conditions with a target polynucleotide to which the oligonucleotide is not substantially complementary.
[0111] “Sequence variation” as used herein refers to any difference in nucleotide sequence between two different oligonucleotide or polynucleotide sequences.
[0112] “Polymorphism” as used herein refers to a sequence variation in a gene which is not necessarily associated with pathology.
[0113] “Mutation” as used herein refers to an altered genetic sequence which results in the gene coding for a non-functioning protein or a protein with substantially reduced or altered function. Generally, a deleterious mutation is associated with pathology or the potential for pathology. The mutations in the present invention usually involve non-sense and frame shift mutations which cause a truncated (and presumably non-functional) protein to be formed. These truncations are at the terminus of the protein rather than a deletion of one or more amino acids in an internal, non-terminal region of the BRCA1 protein.
[0114] The “mutation site” is the location of the added, deleted or substituted bases in the wild-type or consensus BRCA1 DNA sequence which describes the mutant BRCA1 DNA sequence.
[0115] “Predetermined sequence variation” as used herein refers to a nucleotide sequence that is designed to be different than the corresponding sequence in a reference nucleotide sequence. A predetermined sequence variation can be a known mutation in a BRCA1 gene.
[0116] “BRCA1 gene” refers the published gene sequences, such as those appearing in the GENBANK database under Accession Number, 159546, 2489823, and Y08757. Other different sequences which include polymorphisms and genetic alterations, particularly those which don't cause an amino acid change or which are naturally occurring (wild types), which are not associated with pathology are also considered the BRCA1 gene. The corresponding nucleotides would then be used even if the nucleotide number differs. Generally, the sense strand is referred to. The BRCA1 gene may be in fragments. “Fragments” are segments of the BRCA1 gene, generally about 15 or more nucleotides in length, usually a few hundred or more nucleotides in length and potentially containing the particular mutation site of interest. The complementary strand to the sense strand of the BRCA1 gene (the so-called antisense strand) is also considered the “BRCA1 gene”. While the BRCA1 gene discussed herein is the human BRCA1 gene, the corresponding assays and reagents for the gene in other animals may also be used. The BRCA1 gene includes the coding sequences, non-coding sequences (e.g. introns) and regulatory regions affecting gene expression.
[0117] “Allele specific detection assay” as used herein refers to an assay to detect the presence or absence of a predetermined sequence variation in a test polynucleotide or oligonucleotide by annealing the test polynucleotide or oligonucleotide with a polynucleotide or oligonucleotide of predetermined sequence such that differential DNA sequence based techniques or DNA amplification methods discriminate between normal and mutant. Allele Specific Oligonucleotide hybridization is sometimes referred to ASO or the ASO method.
[0118] “Sequence variation locating assay” as used herein refers to an assay that detects a sequence variation in a test polynucleotide or oligonucleotide and localizes the position of the sequence variation to a sub-region of the test polynucleotide, without necessarily determining the precise base change or position of the sequence variation.
[0119] “Targeted confirmatory sequencing” as used herein refers to sequencing a polynucleotide in the region wherein a sequence variation has been located by a sequence variation locating assay in order to determine the precise base change and/or position of the sequence variation.
[0120] “Probe” includes any oligonucleotide which hybridizes to a BRCA1 or mutant BRCA1 sequence. The probe may be labeled (directly or indirectly) or it may act as a primer such as a PCR primer.
[0121] “Cancer”, “tumor” and “neoplasm” are used interchangeably to refer to certain abnormal cells. The terms are not meant to denote a stage of malignancy.
[0122] The invention in several of its embodiments includes:
[0123] Detection of Predetermined Sequence Variations
[0124] Stage I analysis is used to determine the presence or absence of a predetermined nucleotide sequence variation; preferably a known mutation or set of known mutations in the test gene. In accordance with the invention, such predetermined sequence variations are preferably detected by allele specific hybridization, a sequence-dependent-based technique which permits discrimination between normal and mutant alleles. An allele specific assay is dependent on the differential ability of mismatched nucleotide sequences (e.g., normal:mutant) to hybridize with each other, as compared with matching (e.g., normal:normal or mutant:mutant) sequences.
[0125] Detection of Predetermined Sequence Variations Using Allele Specific Hybridization
[0126] A variety of methods well-known in the art can be used for detection of predetermined sequence variations by allele specific hybridization. Preferably, the test gene is probed with allele specific oligonucleotides (ASOs); and each ASO contains the sequence of a known mutation. ASO analysis detects specific sequence variations in a target polynucleotide fragment by testing the ability of a specific oligonucleotide probe to hybridize to the target polynucleotide fragment. Preferably, the oligonucleotide contains the mutant sequence (or its complement). The presence of a sequence variation in the target sequence is indicated by hybridization between the oligonucleotide probe and the target fragment under conditions in which an oligonucleotide probe containing a normal sequence does not hybridize to the target fragment. A lack of hybridization between the sequence variant (e.g., mutant) oligonucleotide probe and the target polynucleotide fragment indicates the absence of the specific sequence variation (e.g., mutation) in the target fragment. In a preferred embodiment, the test samples are probed in a standard dot blot format. Each region within the test gene that contains the sequence corresponding to the ASO is individually applied to a solid surface, for example, as an individual dot on a membrane. Each individual region can be produced, for example, as a separate PCR amplification product using methods well-known in the art (see, for example, the experimental embodiment set forth in Mullis, U.S. Pat. No. 4,683,202). The use of such a dot blot format is described in detail in the Examples below, detailing the Stage I analysis of the human BRCA1 gene to detect the presence or absence of different known mutations using corresponding ASOs.
[0127] Membrane-based formats that can be used as alternatives to the dot blot format for performing ASO analysis include, but are not limited to, reverse dot blot, MAD (multiplex amplification assay), and multiplex allele-specific diagnostic assay (MASDA).
[0128] In a reverse dot blot format, oligonucleotide or polynucleotide probes having known sequence are immobilized on the solid surface, and are subsequently hybridized with the labeled test polynucleotide sample. In this situation, the primers may be labeled or the NTPs maybe labeled prior to amplification to prepare a labeled test polynucleotide sample. Alternatively, the test polynucleotide sample may be labeled subsequent to isolation and/or synthesis.
[0129] In a multiplex format, individual samples contain multiple target sequences within the test gene, instead of just a single target sequence. For example, multiple PCR products each containing at least one of the ASO target sequences are applied within the same sample dot. Multiple PCR products can be produced simultaneously in a single amplification reaction using the methods of Caskey et al., U.S. Pat. No. 5,582,989. The same blot, therefore, can be probed by each ASO whose corresponding sequence is represented in the sample dots.
[0130] A MASDA format expands the level of complexity of the multiplex format by using multiple ASOs to probe each blot (containing dots with multiple target sequences). This procedure is described in detail in U.S. Pat. No. 5,589,330 by A. P. Shuber, and in Michalowsky et al., American Journal of Human Genetics, 59(4): A272, poster 1573 (October 1996), each of which is incorporated herein by reference in its entirety. First, hybridization between the multiple ASO probe and immobilized sample is detected. This method relies on the prediction that the presence of a mutation among the multiple target sequences in a given dot is sufficiently rare that any positive hybridization signal results from a single ASO within the probe mixture hybridizing with the corresponding mutant target. The hybridizing ASO is then identified by isolating it from the site of hybridization and determining its nucleotide sequence.
[0131] Suitable materials that can be used in the dot blot, reverse dot blot, multiplex, and MASDA formats are well-known in the art and include, but are not limited to nylon and nitrocellulose membranes.
[0132] When the target sequences are produced by PCR amplification, the starting material can be chromosomal DNA in which case the DNA is directly amplified. Alternatively, the starting material can be mRNA, in which case the mRNA is preferably first reversed transcribed into cDNA and then amplified according to the well known technique of RT-PCR (see, for example, to U.S. Pat. No. 5,561,058 by Gelfand et al.).
[0133] The methods described above are suitable for moderate screening of a limited number of sequence variations. However, with the need in molecular diagnosis for rapid, cost effective large scale screening, technologies have developed that integrate the basic concept of ASO, but far exceed the capacity for mutation detection and sample number. These alternative methods to the ones described above include, but are not limited to, large scale chip array sequence-based techniques. The use of large scale arrays allows for the rapid analysis of many sequence variants. A review of the differences in the application and development of chip arrays is covered by Southern, Trends In Genetics, 12: 110-115 (March 1996) and Cheng et al., Molecular Diagnosis, 1:183-200 (Sept. 1996). Several approaches exist involving the manufacture of chip arrays. Differences include, but not restricted to: type of solid support to attach the immobilized oligonucleotides, labeling techniques for identification of variants and changes in the hybridization of the target polynucleotide to the probe.
[0134] A promising methodology for large scale analysis on “DNA chips” is described in detail in Hacia et al., Nature Genetics, 14:441-447 (1996), which is hereby incorporated by reference in its entirety. As described in Hacia et al., high density arrays of over 96,000 oligonucleotides, each 20 nucleotides in length, are immobilized to a single glass or silicon chip using light directed chemical synthesis. Contingent on the number and design of the oligonucleotide probe, potentially every base in a sequence can be interrogated for alterations. Oligonucleotides applied to the chip, therefore, can contain sequence variations that are not yet known to occur in the population, or they can be limited to mutations that are known to occur in the population.
[0135] Prior to hybridization with oligonucleotide probes on the chip, the test sample is preferably isolated, amplified and labeled (e.g. fluorescent markers) by means well known to those skilled in the art. The test polynucleotide sample is then hybridized to the immobilized oligonucleotides. The intensity of hybridization of the target polynucleotide to the immobilized probe is quantitated and compared to a reference sequence. The resulting genetic information can be used in molecular diagnosis.
[0136] A common, but not limiting, utility of the “DNA chip” in molecular diagnosis is screening for known mutations. However, this may impose a limitation to the technique by only looking at mutations that have been described in the field. The present invention allows allele specific hybridization analysis be performed with a far greater number of mutations than 1b previously available. In accordance with the present invention, DNA chips may be constructed with any number of ASO's specific for any number of mutations of the present invention. Such DNA chips may include hundreds, thousands, or more different ASO's, optionally enabling the screening for all possible mutations of the present invention in a single DNA chip. Preferably, DNA chips of the present invention contain about 10 to about 1000, about 100 to about 1,000, about 1,000 to about 10,000, about 10,000 to about 10,0000, or even greater than 100,000 allele specific oligonucleotides specific for the mutations of the present invention. Additionally, such a DNA chip may optionally contain ASO's specific for those missense mutations for which a clinical significance has been established and/or ASO's specific for wild-type BRCA1 DNA sequences. Thus, the efficiency and comprehensiveness of large scale ASO analysis will be broadened, reducing the need for cumbersome end-to-end sequence analysis, not only with known mutations but in a comprehensive manner all mutations which might occur as predicted by the principles accepted, and the cost and time associated with these cumbersome tests will be decreased.
EXAMPLE
[0137] Genomic DNA (at least about 100 ng) is isolated from white blood cells of a subject with a family history of various cancer. Genomic DNA (at least about 100 ng) is also isolated from a wide variety of fresh tumor cells from biopsy, frozen tumor tissue previously surgically removed and tumor cell lines. Dideoxy sequence analysis is performed following polymerase chain reaction amplification of the BRCA1 gene. The primers are the same as used in the references above.
[0138] Each segment of the BRCA1 gene is subjected to direct dideoxy sequence analysis by asymmetric amplification using the polymerase chain reaction (PCR) to generate a single stranded product amplified from this DNA sample. Shuldiner, et al., Handbook of Techniques in Endocrine Research, p. 457-486, DePablo, F., Scanes, C., eds., Academic Press, Inc., 1993. Fluorescent dye is attached for automated sequencing using the TAQ DYE TERMINATOR KIT (PERKIN-ELMER cat# 401628). DNA sequencing is performed in both forward and reverse directions on an APPLIED BIOSYSTEMS, INC. (ABI) automated sequencer (Model 377). The software used for analysis of the resulting data is ASEQUENCE NAVIGATOR@ purchased through ABI.
[0139] The methods of the invention, which can be used to detect sequence variations in any polynucleotide sample, are demonstrated in the Example set forth in this section, for the purpose of illustration, for one gene in particular, namely, the human BRCA1 gene. The BRCA1 coding sequence is approximately 5592 base pairs encoding the 403 amino acids BRCA1 protein.
[0140] Designing an Allele Specific Oligonucleotide (ASO) Probe
[0141] An allele specific oligonucleotide probe is a short, single stranded polynucleotide that is engineered to hybridize exactly to a target sequence under a given set of conditions. Routinely, ASO probes are designed to contain sequences identical to the normal allele and sequence variation respectively. Hybridization of the probe to the target allows for the discrimination of a variant sample. Under stringent conditions, a probe with a variation as simple as a single-base pair will not hybridize to a normal sequence due to a destabilizing effect of the normal-mutant duplex (Ikuta, S. et al, Nucleic Acids Research, 15: 797-811 (1987). For use in this invention, probes are used to discriminate between a wild-type or normal sequence from one that is mutated. Each probe pair contains a polynucleotide sequence that encompassed an area that would identify a selected mutation of the BRCA1 gene.
[0142] The design of an ASO hybridization probe must meet two basic requirements. (Current Protocols in Human Genetics, 9.4, (1995)). First, probes that are used together in the same pool should be around the same length. Although the standard length of a probe is optimally about 17 base pairs, the range can be as short as about 13 or as long as 30 or more. If the mutation contains a long insertion, a longer probe may be desirable. Second, the mismatched region should not be placed at the end of the probe, but approximately in the middle of the sequence. In addition, the placement of a mismatch, in the case of a longer probe, should not be at the end, but at a position that allows strong hybridization and stabilization of the polynucleotide strand. In order to minimize the effects of variations in base composition of the probes, tetramethylammonium chloride may be used as in the ASO hybrid's buffer (Shuber, U.S. Pat. No. 5,633,134). Conventionally, ASO probes are synthesized on a DNA synthesizer. They can be labeled with isotopic or non-isotopic detection agents using means familiar to those of skill in the art. The process outlined in this application for making and using probes can be applicable for other gene sequences.
[0143] Protein Truncation Assay
[0144] PCR Amplification
[0145] BRCA1 is first amplified by PCR from a patient sample using one or more primer sets. A single set of primers may be used to amplify the entire BRCA1 gene or multiple sets of primers may be used. Preferably one need not use a separate set of primers for each exon because the protein expression products are so small that detecting a truncation will be difficult.
[0146] Using the primer sets referenced above in a reaction containing Ex Taq Buffer 10×5.0 mL, dNTP's 2.5 mM 4.0 mL, Forward primer 10 mM 1.0 mL, Reverse primer 10 mM 1.0 mL, TaKaRa Ex Taq (Oncor RR001B) 2.5 U 1.0 mL, Template DNA 100 ng/mL 1.0 mL and OmniPure dH2O to 50 mL final volume. One DNA control (placental DNA), one positive control reaction and three no template control reactions are included for each sample batch.
[0147] PCR for the BRCA1 gene is performed using the following thermocycling conditions (4 linked programs):
10|
|
TemperatureTime#of Cycles
|
94° C.5 min.1
94° C. 55° C. 72° C.30 sec. 1 min. 3 min.1 35
72° C.5 min.1
4° C.hold1
|
[0148] 5 m\μL of the PCR product is placed on a 2% agarose gel. On the same gel a DNA 100 BP LADDER (Gibco BRL 15628-019) and a low DNA MASS LADDER (Gibco BRL 10068-013) is placed to verify product size.
[0149] The resulting product is analyzed according to the following rules: l)Each patient sample must show a band of the correct size. If a patient sample demonstrates smearing or multiple bands, the PCR reaction needs to be repeated (no more than three times) until a clean, single band is detected. If no PCR product is visible or if only a weak band is visible, but the placental DNA sample worked well, the sample is reamplified with twice as much template. The volume of the reaction is adjusted appropriately.
[0150] All “No template” (2-3) reactions must not show amplification products of any size. If any one shows any contamination (i.e. specific amplification product), all PCR products should be thrown away and the entire PCR set-up should be repeated after appropriate PCR decontamination procedures have been taken.
[0151] The intensity of the patient sample PCR product is compared with that of the DNA 100 bp ladder. The optimum amount of PCR product on the gel should be 50-100 ng. If less than this is present or if the intensity of the patient sample is less than half the intensity of the placental control sample, repeat the PCR reaction until sufficient quantity is obtained. If no PCR product is visible or if only a weak band is visible, but the placental DNA sample worked well, the patient sample is reamplified with twice as much template DNA.
[0152] The PCR product is precipitated by adding the following to each tube: 3M sodium acetate 30 μL, 20 mg/mL glycogen 2 μL, dH2O 178 μL, and PCR product 90 μL. The reaction is mixed by inverting the tubes 4-6 times. 600 μL of 100% ethanol (200 proof) is added to each tube and the reaction can be placed at −20° C. overnight. The following day, samples are allowed to equilibrate to room temperature before proceeding. The tubes are centrifuged at 13,000 rpm for 15 minutes at room temperature in an IEC microcentrifuge. The supernatant is removed leaving a pellet. 1 mL cold 70% ethanol is added to each tube and centrifuged at 13,000 rpm for 5 minutes at room temperature in the IEC microcentrifuge. The supernatant is again removed leaving the pellet. The tubes are dried by vacuum for 10-15 minutes until no ethanol remains in the tube. Redissolve the pellet in 10 μL of dH2O.
[0153] 1 mL of the PCR product is electrophoresed on a 2% TAE agarose gel, in parallel with a DNA 100 bp ladder and a DNA mass ladder to verify product size and amount of product. The mass of the 1 μL purified PCR product is estimated using the DNA mass ladder as a reference. The band equals one-tenth of the total quantity of purified PCR product. The amount required for the lysate reaction is between 500-750 ng. For example, if the band is the intensity of the 100 ng marker, then the amount needed for the lysate reaction is 5.0-7.5 μL of purified PCR product. If there is less than 500 ng total, the PCR must be repeated.
[0154] In vitro transcription/translation
[0155] This procedure is performed using the TnT Coupled Reticulocyte Lysate system from Promega L4610. Each kit contains the reagents necessary for 80 25 μL translation reactions. This kit allows the synthesis of the specified protein from PCR product.
[0156] The TnT Rabbit Reticulocyte Lysate is thawed in gloved hands and immediately place on ice. The TnT T7 RNA Polymerase and RNase Inhibitor (Boehringer Mannheim 799025) are placed on ice at all times. Solutions are mixed in the following order in a 0.5 mL microcentrifuge tube. Rabbit Reticulocyte Lysate 12.5 μL, TnT Reaction buffer 1.0 μL, TnT T7 RNA Polymerase 0.5 μL, Amino Acid Mixture minus Met (1 mM) 0.5 μL, RNase inhibitor 0.5 μL, per 15.0 ml sample.
[0157] The following are added to a clean labeled 0.5 mL microcentrifuge tube for each reaction: master mix 15.0 μL, 35S methionine (Amersham SJ1015) (1 mCi/100 μL) 2.0 μL, DNA template (500-750 ng) per μL, sdH2O to 25 μL final volume. The reactions are placed in the 30° C. water bath for 1.5 hours.
[0158] Gel Preparation, Run and Handling
[0159] Pre-run the gel (15% Tris-glycine Ready gel (15 well) BioRad 161-0938 or (10 well) BioRad 161-0908) in a Mini Protean II Gel apparatus (BioRad 165-2941) for 15 minutes to equilibrate the gel with the SDS from the running buffer (10×Tris/Glycine/SDS, BioRad 161-0732). Load samples and check the buffer volume during the course of the run to assure that nothing has leaked out. Decreased buffer volume in the middle chamber will interfere with the current. Monitor the progress of the gel running to prevent the lower marker (blue band) from running off the gel. The average running time is 3 hours.
[0160] The gel is rinsed with dH2O after fixing the gel to remove excess salicylic acid and oriented. A mixture of 5.26 mL of beta-mercaptoethanol (BioRad 161-0710) and 94.74 mL of Laemelli sample buffer (BioRad 161-0737) was prepared. The 35S ladder is added as follows in a labeled, 0.5 mL microcentrifuge tube: 7 kD marker in 5 μL, 11 kD marker in 5 μL, 25 kD marker in 2 μL, 74 kD marker in 2 μL. A second labeled tube completes the 35S ladder with: combined lysate 14 μL, sample buffer 32 μL, 100 μM IAA 12 μL, sdH2O 22 mL with a total of 20 μL per gel.
[0161] In a 0.5 μL microcentrifuge tube, the following is added:
[0162] 2 μL lysate reaction, 8 μL sample buffer, 4 μL 100 mM IAA, 6 μL sdH2O, to a total load volume of 20 μL. The samples are heated at 95° C. for 3 minutes and then placed on ice for 2 minutes before loading gel. For every gel run, the following controls are included:
[0163] a. 10 μL of Broad Range Prestained SDS-PAGE standard (BioRad 161-0318) heated to 37° C. to dissolve any precipitated material.
[0164] b. 35S ladder
[0165] c. one negative control per sample
[0166] d. one positive control specific to the fragment under analysis
[0167] During the first 20 minutes, the samples are run at 10 mA (20 mA for two gels). This allows the protein to migrate through the resolving gel at a slower rate. After 20 minutes, the current is increased to 20 mA (40 mA for two gels) for the remainder of the gel run. The buffer volume is checked during the course of the run to assure that nothing has leaked out. Decreased buffer volume in the middle chamber will interfere with the current. The average running time is 3 hours. The lower marker on the polypeptide standard is 7.1 kD (blue band) and should not run off the gel.
[0168] After running the gel, the plastic adhesive is removed from the back of the ready gel and gently peel off the top plate. The gel will remain attached to the back plate. The gel is placed in fixative solution of Isopropanol 250 mL, sdH2O 650 mL and acetic acid 100 mL in a volume sufficient to cover gel for 15 minutes with swirling the gel occasionally by hand or on a rotating plate. The gel is then placed in a fluorogenic agent of salicylic acid 160 g and sdH2O to 1 L final volume, pH adjusted to pH 6.0, in a volume sufficient to cover gel for 15 minutes with swirling the gel occasionally by hand or on a rotating plate. The gel is then rinsed with sdH2O to remove any excess salicylic acid.
[0169] The gel is dried by sandwiching it between two sheets of cellophane and drying it in a gel dryer (BioRad 165-1771) for 1.5-2.5 hours. The dried gel is removed, placed in a film cassette (Fisher IB1502350) taped to a piece of film (Kodak BioMax MR Sigma 870-1302) over the dried gel(s), oriented with Identi-kit tape (Diversified Biotech ID-100) and exposed for 3-5 XD hours at −80° C. The film may be exposed overnight at −20° C. or over the weekend at room temperature if needed.
[0170] Patient samples are compared to the normal genomic DNA fragments. Truncated proteins are possible at any point along the sequence. Therefore, a shift in bands located in any patient sample is an indication of a mutation. There are areas in the sequence where a mutation can occur that are difficult to detect because of the small molecular weight protein formed by the truncation or because a stop signal occurs at the end of the sequence. These mutations are scanned for as follows. The base pairs at the 5′ end of BRCA1 are sequenced. This assures the ability to detect, by means of sequencing, proteins 10 kD or less and the ability to detect, by means of protein truncation, anything greater than 10 kD. A mutation causing a stop codon to occur at the end of the BRCA1 gene is identified by sequencing the final 257 base pairs.
[0171] The truncated BRCA1 protein should be of equal intensity on the gel as the normal BRCA1 protein. When a potential truncated band is identified, the protein must be sized using the 35S radiolabeled marker. For example, if a band appears to be in the area of the 50 kD marker, then the range of inspection for the mutation is between 40-50 kD. The position of the stop signal does not always indicate the position where the mutation occurred. Using the following conversion factor: 270 bp=10 kD, the molecular weight can be converted into base pairs.
[0172] Detailed Method for the Detection of Sequence Variations in Polynucleotides
[0173] Isolation of Genomic DNA
[0174] White blood cells are collected from the patients and genomic DNA is extracted from the white blood cells according to well-known methods (Sambrook, et al., Molecular Cloning, A Laboratory Manual, 2nd Ed., 1989, Cold Spring Harbor Laboratory Press, at 9.16-9.19). Genomic DNA is similarly extracted from a wide variety of fresh tumor cells from biopsy, frozen tumor tissue previously surgically removed and tumor cell lines.
[0175] PCR Amplification for Sequencing
[0176] The genomic DNA is used as a template to amplify a DNA fragment encompassing the site of the mutation to be tested. The 25 μl PCR reaction contains the following components: 1 μl template (100 ng/ ml) DNA, 2.5 μl 10×PCR Buffer (PERKIN-ELMER), 1.5 μl dNTP (2 mM each dATP, dCTP, dGTP, dTTP), 1.5 μl Forward Primer (10 mM), 1.5 μl Reverse Primer (10 mM), 0.5 μl (2.5 U total) AMPLITAQ GOLD™ TAQ DNA POLYMERASE or AMPLITAQ7 TAQ DNA POLYMERASE (PERKIN-ELMER), 1.0 to 5.0 μl (25 mM) MgCl2 (depending on the primer) and distilled water (dH2O) up to 25 μl. All reagents for each exon except the genomic DNA can be combined in a master mix and aliquoted into the reaction tubes as a pooled mixture.
[0177] For each exon analyzed, the following control PCRs are set up:
[0178] (1) “Negative” DNA control (100 ng placental DNA (SIGMA CHEMICAL CO., St. Louis, Mo.)
[0179] (2) Three “no template” controls
[0180] PCR for all exons is performed using the following thermocycling conditions:
11|
|
TemperatureTimeNumber of Cycles
|
90° C.5 min. (AMPLITAQ)1
or10 min. (GOLD)
|
95° C. 55° C. 72° C.30 sec. 30 sec. 1 min.2 30 cycles
|
72° C.5 min.1
4° C.hold1
|
[0181] Quality Control Agarose Gel of PCR Amplification:
[0182] The quality of the PCR products is examined prior to further analysis by electrophoresing an aliquot of each PCR reaction sample on an agarose gel. 5 μl of each PCR reaction is run on an agarose gel along side a DNA 100 BP DNA LADDER (Gibco BRL cat# 15628-019). The electrophoresed PCR products are analyzed according to the following criteria:
[0183] Each patient sample must show a single band of the size corresponding the number of base pairs expected from the length of the PCR product from the forward primer to the reverse primer. If a patient sample demonstrates smearing or multiple bands, the PCR reaction must be repeated until a clean, single band is detected. If no PCR product is visible or if only a weak band is visible, but the control reactions with placental DNA template produced a robust band, the patient sample should be re-amplified with 2×as much template DNA.
[0184] All three “no template” reactions must show no amplification products. Any PCR product present in these reactions is the result of contamination. If any one of the “no template” reactions shows contamination, all PCR products should be discarded and the entire PCR set of reactions should be repeated after the appropriate PCR decontamination procedures have been taken.
[0185] The optimum amount of PCR product on the gel should be between 50 and 100 ng, which can be determined by comparing the intensity of the patient sample PCR products with that of the DNA ladder. If the patient sample PCR products contain less than 50 to 100 ng, the PCR reaction should be repeated until sufficient quantity is obtained.
[0186] DNA Sequencing
[0187] For DNA sequencing, double stranded PCR products are labeled with four different fluorescent dyes, one specific for each nucleotide, in a cycle sequencing reaction. With Dye Terminator Chemistry, when one of these nucleotides is incorporated into the elongating sequence it causes a termination at that point. Over the course of the cycle sequencing reaction, the dye-labeled nucleotides are incorporated along the length of the PCR product generating many different length fragments.
[0188] The dye-labeled PCR products will separate according to size when electrophoresed through a polyacrylamide gel. At the lower portion of the gel on an ABI automated sequencer, the fragments pass through a region where a laser beam continuously scans across the gel. The laser excites the fluorescent dyes attached to the fragments causing the emission of light at a specific wavelength for each dye. Either a photomultiplier tube (PMT) detects the fluorescent light and converts is into an electrical signal (ABI 373) or the light is collected and separated according to wavelength by a spectrograph onto a cooled, charge coupled device (CCD) camera (ABI 377). In either case the data collection software will collect the signals and store them for subsequent sequence analysis.
[0189] PCR products are first purified for sequencing using a QIAQUICK-SPIN PCR PURIFICATION KIT (QIAGEN #28104). The purified PCR products are labeled by adding primers, fluorescently tagged dNTPs and Taq Polymerase FS in an ABI Prism Dye Terminator Cycle Sequencing Kit (PERKIN ELMER/ABI catalog #02154) in a PERKIN ELMER GENEAMP 9600 thermocycler.
[0190] The amounts of each component are:
12|
|
For SamplesFor Controls
ReagentVolumeReagentVolume
|
Dye mix8.0 μLPGEM2.0 μL
Primer (1.6 mM)2.0 μLM132.0 μL
PCR product2.0 μLDye mix8.0 μL
sdH2O8.0 μLsdH2O8.0 μL
|
[0191] The thermocycling conditions are:
13|
|
TemperatureTime# of Cycles
|
|
|
96° C. 50° C. 60° C.15 sec. 5 sec. 4 min.3 25
|
4° C.hold1
|
[0192] The product is then loaded into a gel and placed into an ABI DNA Sequencer (Models 373A & 377) and run. The sequence obtained is analyzed by comparison to the wild type (reference) sequence using SEQUENCE NAVIGATOR software. When a sequence does not align, it indicates a possible mutation. The DNA sequence is determined in both the forward and reverse directions. All results are provided to a second reader for review.
[0193] Heterozygous/homozygous point mutations and polymorphisms must be seen in both strands. Frame shift mutations will be seen in both strands and must have clear double peaks in frame shift regions to be so identified.
[0194] PCR Amplification for ASO
[0195] The genomic DNA is used as a template to amplify a separate DNA fragment encompassing the site of the mutation to be tested. The 50 ml PCR reaction contains the following components: 1 ml template (100 ng/ ml) DNA, 5.0 ml 10×PCR Buffer (PERKIN-ELMER), 2.5 ml dNTP (2 mM each dATP, dCTP, dGTP, dTTP), 2.5 ml Forward Primer (10 mM), 2.5 ml Reverse Primer (10 mM), 0.5 ml (2.5 U total) AMPLITAQ7 TAQ DNA POLYMERASE or AMPLITAQ GOLD™ DNA POLYMERASE (PERKIN-ELMER), 1.0 to 5.0 ml (25 mM) MgCl2 (depending on the primer) and distilled water (dH2O) up to 50 ml. All reagents for each exon except the genomic DNA can be combined in a master mix and aliquoted into the reaction tubes as a pooled mixture.
[0196] For each exon analyzed, the following control PCRs are set up:
[0197] (1) “Negative” DNA control (100 ng placental DNA (SIGMA CHEMICAL CO., St. Louis, Mo.)
[0198] (2) Three “no template” controls
[0199] PCR for all exons is performed using the following thermocycling conditions:
14|
|
TemperatureTimeNumber of Cycles
|
95° C.5 min. (AMPLITAQ)1
or 10 min. (GOLD)
|
95° C. 55° C. 72° C.30 sec. 30 sec. 1 min.4 30 cycles
|
72° C.5 min.1
4° C.hold1
|
[0200] The quality control agarose gel of PCR amplification is performed as above.
[0201] Binding PCR Products to Nylon Membrane
[0202] The PCR products are denatured no more than 30 minutes prior to binding the PCR products to the nylon membrane. To denature the PCR products, the remaining PCR reaction (45 ml) and the appropriate positive control mutant gene amplification product are diluted to 200 ml final volume with PCR Diluent Solution (500 mM NaOH, 2.0 M NaCl, 25 mM EDTA) and mixed thoroughly. The mixture is heated to 95° C. for 5 minutes, and immediately placed on ice and held on ice until loaded onto dot blotter, as described below.
[0203] The PCR products are bound to 9 cm by 13 cm nylon ZETA PROBE BLOTTING MEMBRANE (BIO-RAD, Hercules, Calif., catalog number 162-0153) using a BIO-RAD dot blotter apparatus. Forceps and gloves are used at all times throughout the ASO analysis to manipulate the membrane, with care taken never to touch the surface of the membrane with bare hands or latex gloves.
[0204] Pieces of 3 MM filter paper [WHATMAN7, Clifton, N.J.] and nylon membrane are pre-wet in 10×SSC prepared fresh from 20×SSC buffer stock. The vacuum apparatus is rinsed thoroughly with dH2O prior to assembly with the membrane. 100 ml of each denatured PCR product is added to the wells of the blotting apparatus. Each row of the blotting apparatus contains a set of reactions for a single exon to be tested, including a placental DNA (negative) control, a synthetic oligonucleotide with the desired mutation or a PCR product from a known mutant sample (positive control), and three no template DNA controls.
[0205] After applying PCR products, the nylon filter is placed DNA side up on a piece of 3 MM filter paper saturated with denaturing solution (1.5 M NaCl, 0.5 M NaOH) for 5 minutes. The membrane is transferred to a piece of 3MM filter paper saturated with neutralizing solution (1 M Tris-HCl, pH 8, 1.5 M NaCl) for 5 minutes. The neutralized membrane is then transferred to a dry 3 MM filter DNA side up, and exposed to ultraviolet light (STRALINKER, STRATAGENE, La Jolla, Calif.) for exactly 45 seconds the fix the DNA to the membrane. This UV crosslinking should be performed within 30 min. of the denaturation/neutralization steps. The nylon membrane is then cut into strips such that each strip contains a single row of blots of one set of reactions for a single exon.
[0206] Hybridizing Labeled Oligonucleotides to the Nylon Membrane
[0207] Prehybridization
[0208] The strip is prehybridized at 52° C. incubation using the HYBAID7 (SAVANT INSTRUMENTS, INC., Holbrook, N.Y.) hybridization oven. 2×SSC (15 to 20 ml) is preheated to 52° C. in a water bath. For each nylon strip, a single piece of nylon mesh cut slightly larger than the nylon membrane strip (approximately 1″×5″) is pre-wet with 2×SSC. Each single nylon membrane is removed from the prehybridization solution and placed on top of the nylon mesh. The membrane/mesh “sandwich” is then transferred onto a piece of Parafilm™. The membrane/mesh sandwich is rolled lengthwise and placed into an appropriate HYBAID7 bottle, such that the rotary action of the HYBAID7 apparatus caused the membrane to unroll. The bottle is capped and gently rolled to cause the membrane/mesh to unroll and to evenly distribute the 2×SSC, making sure that no air bubbles formed between the membrane and mesh or between the mesh and the side of the bottle. The 2×SSC is discarded and replaced with 5 ml TMAC Hybridization Solution, which contains 3 M TMAC (tetramethyl ammoniumchloride—SIGMA T-3411), 100 mM Na3PO4 (pH 6.8), 1 mM EDTA, 5× Denhardt's (1% Ficoll, 1% polyvinylpyrrolidone, 1% BSA (fraction V)), 0.6% SDS, and 100 mg/ml Herring Sperm DNA. The filter strips are prehybridized at 52° C. with medium rotation (approx. 8.5 setting on the HYBAID7 speed control) for at least one hour. Prehybridization can also be performed overnight.
[0209] Labeling Oligonucleotides
[0210] The DNA sequences of the numerous oligonucleotide probes are used to detect the BRCA1 mutation. For each mutation, a mutant and a normal oligonucleotide must be labeled. While only five pairs of oligonucleotide probes are listed below, corresponding oligonucleotides for each mutation may be prepared and used in a similar manner.
15|
mutation 185delAG.
wild-type
5′-AAT CTT AGA GTG TCC CA-3′,SEQ ID NO:3
mutant
5′-ATC TTA GTG TCC CAC CT-3′,SEQ ID NO:4
|
mutation 1136insA.
wild-type
5′-CAG AAA AAA AGG TAG AT-3′,SEQ ID NO:5
mutant
5′-CAG AAA AAA AAG GTA GA-3′,SEQ ID NO:6
|
mutation 5383insC.
wild-type
5′-AGA GAA TCC CAG GAC AG-3′,SEQ ID NO:7
mutant
5′-AGA GAA TCC CCA GGA CA-3′,SEQ ID NO:8
|
mutationC4446T.
wild-type
5′-AGG ACC TGC GAA ATC CA-3′,SEQ ID NO:9
mutant
5′-AGG ACC TGT GAA ATC CA-3′,SEQ ID NO:10
[0211] Each labeling reaction contains 2 ml 5×Kinase buffer (or 1 ml of 10×Kinase buffer), 5 ml gamma-ATP 32P (not more than one week old), 1 μl T4 polynucleotide kinase, 3 μl oligonucleotide (20 mM stock), sterile H2O to 10 μl final volume if necessary. The reactions are incubated at 37° C. for 30 minutes, then at 65° C. for 10 minutes to heat inactivate the kinase. The kinase reaction is diluted with an equal volume (10 μl) of sterile dH2O (distilled water).
[0212] The oligonucleotides are purified on STE MICRO SELECT-D, G-25 spin columns (catalog no. 5303-356769), according to the manufacturer's instructions. The 20 μl synthetic oligonucleotide eluate is diluted with 80 μl dH2O (final volume=100 μl). The amount of radioactivity in the oligonucleotide sample is determined by measuring the radioactive counts per minute (cpm). The total radioactivity must be at least 2 million cpm. For any samples containing less than 2 million cpm total, the labeling reaction is repeated.
[0213] Hybridization with Mutant Oligonucleotides
[0214] Approximately 2-5 million cpm of the labeled mutant oligonucleotide probe is diluted into 5 ml of TMAC hybridization solution, containing 40 μl of 20 mM stock of unlabeled normal oligonucleotide. The probe mix is preheated to 52° C. in the hybridization oven. The pre-hybridization solution is removed from each bottle and replaced with the probe mix. The filter is hybridized for 1 hour at 52° C. with moderate agitation. Following hybridization, the probe mix is decanted into a storage tube and stored at −20° C. The filter is rinsed by adding approximately 20 ml of 2×SSC+0.1% SDS at room temperature and rolling the capped bottle gently for approximately 30 seconds and pouring off the rinse. The filter is then washed with 2×SSC+0. 1% SDS at room temperature for 20 to 30 minutes, with shaking.
[0215] The membrane is removed from the wash and placed on a dry piece of 3MM WHATMAN filter paper then wrapped in one layer of plastic wrap, placed on the autoradiography film, and exposed for about five hours depending upon a survey meter indicating the level of radioactivity. The film is developed in an automatic film processor.
[0216] Control Hybridization with Normal Oligonucleotides
[0217] The purpose of this step is to ensure that the PCR products are transferred efficiently to the nylon membrane.
[0218] Following hybridization with the mutant oligonucleotide, as described in the Examples above, each nylon membrane is washed in 2×SSC, 0.1% SDS for 20 minutes at 65° C. to melt off the mutant oligonucleotide probes. The nylon strips are then prehybridized together in 40 ml of TMAC hybridization solution for at least 1 hour at 52° C. in a shaking water bath. 2-5 million counts of each of the normal labeled oligonucleotide probes plus 40 μl of 20 mM stock of unlabeled normal oligonucleotide are added directly to the container containing the nylon membranes and the prehybridization solution. The filter and probes are hybridized at 52° C. with shaking for at least 1 hour. Hybridization can be performed overnight, if necessary. The hybridization solution is poured off, and the nylon membrane is rinsed in 2×SSC, 0. 1% SDS for 1 minute with gentle swirling by hand. The rinse is poured off and the membrane is washed in 2×SSC, 0.1% SDS at room temperature for 20 minutes with shaking.
[0219] The nylon membrane is removed placed on a dry piece of 3 MM WHATMAN filter paper. The nylon membrane is then wrapped in one layer of plastic wrap and placed on autoradiography film, and exposure is for at least 1 hour.
[0220] For each sample, adequate transfer to the membrane is indicated by a strong autoradiographic hybridization signal. For each sample, an absent or weak signal when hybridized with its normal oligonucleotide, indicates an unsuccessful transfer of PCR product, and it is a false negative. The ASO analysis must be repeated for any sample that did not successfully transfer to the nylon membrane.
[0221] Interpreting Results
[0222] After hybridizing with mutant oligonucleotides, the results for each exon are interpreted as follows:
16TABLE 4A
|
|
ResultInterpretationAction
|
|
|
5678All quality controls indicate assay is successfulRecord results, dark circles are mutation positive, and all others are negative
|
(+(−)NTNTNTAssay not specific,Rewash
mutant oligonucleotidemembrane 30
hybridizing to normalminutes longer
DNA.at appropriate
(+)(−)NTNTNTtemperature
Mutant oligonucleotideand re-expose.
probe is either washedRehybridize
off or did notwith remaining
label well enough,oligonucleo-
or PCR product is notsignal, perform
transferred totide labeled
membraneIf still no
efficiently.normal
oligonucleo-
tide hyb. as
per the Exam-
ples to test
transfer of PCR
to membrane.
(+)(−)NTNTNT
Positive and negativePerform
controls indicate assaystandard clean
is successful, but PCRup procedures
(+)(−)NTNTNTis contaminated.for PCR
contamination.
|
[0223] After hybridization with normal oligonucleotides, interpret the results as follows:
17TABLE 4B
|
|
Results indicate transferRecord results.
of PCR products to
membrane is successful.
(+)(−)NTNTNT
|
91011Results indicate transfer of patient sample #1 is inefficient. May get false negative from this sampleThis sample will have to be transferred to another membrane and the assay repeated
|
(+)(−)#1NTNTNT
|
[0224] The sample #1 should be lighter than the controls. Patient samples containing a mutation are generally heterozygous and will hybridize to both the normal and mutant oligonucleotide probes.
[0225] Data on Specific Mutations
[0226] The following specific mutations are examples of those which are presumed to be clinically significant for typing current cancer cells or a germ line mutation increasing the susceptibility to a tumor. A few of these mutations were also found by others as stated in TABLE 1 above.
18TABLE 8
|
|
List of Nonsense Mutations
|
|
T127A, T127g, G144T, G147T, C153T, C174T, A177T, T184A, T184g, G186T, T191A,
T200A, G204T, T208A, A213T, G216T, A231T, T236A, C251A, A252T, C260A, A267T,
C279T, A282T, A285T, C295A, C295g, C297T, T302A, T307A, T307g, T311A, A312T,
A327T, C339T, G342T, A351T, C360T, G369T, G372T, T379A, A381T, T392A, C399T,
T415A, G417T, T422A, T422G, T434A, T434G, A444T, A447T, G450T, G465T, A474T,
G480T, C495T, C509A, C509G, A510T, A522T, A525T, C534T, G540T, G546T, T559A,
C561T, G564T, C582T, G597T, A606T, A621T, C624T, C633T, C639T, A642T, C656A,
C656G, G660T, T664A, G666T, G681T, A696T, T707A, T707G, C710A, G717T, C723T,
G726T, T730A, T733A, T733g, C735T, C747T, G750T, G762T, T772A, A783T, A786T,
T797A, G798T, G807T, G828T, C837T, T856A, G867T, A870T, G882T, G894T, A897T,
T902A, T902G, C903T, C919A, C919g, T925A, G933T, T941A, C964A, C964g, T967A,
T967g, C969T, G975T, T988A, T988g, T991A, T991g, A999T, A1005T, G1017T, A1020T,
G1026T, T1034A, A1038T, A1044T, C1047T, T1057A, T1057g, C1068T, A1077T, G1081A,
G1082A, G1086T, A1092T, G1095T, T1103A, G1128T, A1131T, A1134T, T1163A, G1164T,
A1167T, A1170T, G1173T, G1177A, G1178A, A1182T, C1185T, A1188T, C1199A, C1201A,
C1201g, G1203T, A1212T, G1221T, G1234A, G1235A, C1257T, A1260T, G1269T, G1273A,
G1274A, A1281T, G1290T, T1297A, T1297g, C1312A, C1312g, G1323T, G1329T, C1333A,
C1333g, A1341T, T1357A, G1371T, G1380T, T1385A, T1385G, C1396A, C1396g, G1398T,
A1401T, T1411A, T1411g, G1431T, T1438A, T1438g, T1445A, A1446T, G1452T, A1455T,
A1467T, C1471A, C1471g, G1476T, G1488T, A1494T, A1506T, T1514A, T1514G, A1518T,
A1521T, T1540A, T1540g, G1554T, G1569T, G1584T, C1590T, C1599T, G1602T, A1620T,
T1624A, T1624g, A1626T, A1632T, A1638T, C1648A, C1648g, G1662T, A1674T, A1677T,
T1687A, C1695T, A1698T, G1707T, C1719T, G1722T, C1731T, G1737T, C1740T, C1749T,
G1779T, A1785T, A1791T, C1806T, G1812T, A1815T, G1833T, C1837A, C1837g, G1842T,
A1845T, G1848T, A1860T, A1866T, G1872T, G1902T, G1908T, T1912A, T1912g, C1927A,
C1927g, A1929T, A1938T, A1941T, A1959T, G1989T, A2004T, T2027A, G2031T, T2035A,
C2037T, T2051A, G2061T, G2064T, A2070T, A2073T, A2076T, A2079T, C2084A, C2084G,
C2088T, A2109T, C2118T, G2127T, A2133T, G2136T, G2148T, A2154T, A2157T, A2166T,
G2175T, C2178T, A2187T, A2190T, G2214T, A2220T, T2224A, T2224g, A2250T, T2255A,
C2257A, C2257g, G2268T, A2274T, G2277T, A2301T, G2304T, G2307T, A2310T, G2313T,
G2316T, A2319T, G2325T, A2334T, G2352T, A2361T, T2374A, T2374g, G2379T, G2382T,
T2392A, C2394T, G2400T, A2403T, G2412T, C2428A, C2428g, T2450A, T2450G, C2457T,
G2460T, C2470A, T2473A, T2473g, G2478T, A2496T, A2502T, G2508T, A2517T, T2522A,
C2529T, T2534A, G2544T, A2553T, G2556T, T2573A, A2577T, A2586T, G2598T, A2607T,
T2612A, T2612G, T2617A, G2619T, G2625T, G2643T, G2655T, G2661T, G2664T, G2670T,
C2682T, T2687A, T2687G, T2689A, C2691T, A2703T, C2710A, C2710g, A2712T, C2718T,
C2722A, C2722g, C2737A, C2737g, G2745T, G2754T, G2757T, G2760T, T2765A, T2794A,
T2794g, A2796T, A2799T, C2802T, A2811T, G2823T, T2828A, G2829T, C2832T, A2835T,
G2838T, G2841T, C2847T, G2850T, A2853T, G2859T, A2871T, C2880T, C2919T, A2922T,
A2928T, A2946T, T2951A, A2958T, G2961T, T2978A, C2983A, C2983g, C2988T, A2994T,
G3003T, G3009T, A3027T, G3033T, T3040A, T3040g, C3042T, T3053A, T3053G, A3078T,
C3082A, C3082g, A3090T, A3096T, T3101A, A3102T, A3105T, G3117T, G3120T, G3129T,
G3132T, C3139A, C3139g, C3145A, C3145g, G3150T, A3153T, G3156T, G3162T, G3168T,
A3213T, G3216T, A3228T, G3231T, C3241A, C3241g, G3255T, G3276T, G3297T, G3315T,
C3324T, G3330T, A3339T, A3345T, A3354T, T3358A, A3372T, T3376A, T3376g, T3385A,
C3387T, G3393T, T3401A, T3401G, A3402T, C3405T, G3417T, T3428A, A3429T, G3438T,
A3444T, A3447T, C3450T, G3453T, T3458A, T3458G, G3459T, G3462T, C3471T, T3500A,
T3500G, C3508A, C3508g, T3517A, T3517g, G3519T, C3522T, G3531T, C3549T, T3557A,
G3561T, T3580A, T3580g, G3591T, A3597T, G3600T, G3618T, A3630T, G3633T, A3654T,
C3663T, A3666T, G3669T, G3672T, T3712A, C3717T, C3725A, C3725G, C3726T, A3729T,
A3738T, A3741T, T3745A, T3745g, G3747T, C3754A, C3754g, G3756T, G3759T, T3766A,
T3766g, G3774T, G3780T, G3783T, C3794A, C3798T, T3805A, T3808A, T3808g, A3816T,
C3837T, G3867T, T3872A, A3879T, G3888T, G3891T, T3898A, T3898g, T3901A, T3901g,
C3904A, C3904g, T3907A, A3909T, T3919A, T3919g, C3929A, C3936T, T3946A, A3951T,
C3960T, G3963T, G3978T, G3981T, A3987T, T3992A, T4003A, C4012A, C4012g, C4014T,
C4019A, G4023T, T4027A, G4029T, T4036A, C4056T, T4069A, A4083T, C4086T, C4098T,
G4104T, C4110T, G4113T, A4131T, G4134T, T4138A, C4144A, C4144g, G4152T, G4155T,
A4158T, G4161T, T4171A, G4173T, G4176T, C4185T, G4188T, G4191T, C4194T, C4207A,
C4207g, T4213A, T4213g, G4218T, T4235A, G4236T, G4242T, G4257T, C4265A, C4267A,
C4267g, C4281T, T4294A, T4294g, C4302T, C4305T, C4320T, A4335T, C4341T, C4344T,
G4347T, G4356T, G4362T, T4372A, T4372g, G4374T, C4377T, C4389T, C4406A, C4406G,
G4437T, C4446T, G4455T, C4458T, C4468A, C4468g, G4470T, A4473T, T4483A, T4483g,
C4489A, C4489g, C4491T, A4494T, G4503T, C4508A, C4508G, C4518T, G4527T, A4545T,
G4551T, A4578T, A4584T, G4587T, G4593T, G4599T, C4606A, C4606g, A4617T, C4622A,
C4627A, C4627g, T4630A, T4630g, G4642A, G4643A, C4646A, C4646G, C4658A, C4671T,
A4677T, C4685A, C4685G, C4692T, G4695T, G4698T, A4707T, G4722T, G4725T, C4728T,
C4731T, G4737T, G4740T, T4759A, G4764T, C4775A, C4775G, T4777A, C4785T, G4794T,
G4797T, C4808A, C4808G, G4812T, G4818T, G4845T, G4860T, A4866T, G4875T, C4879A,
C4879g, C4906A, C4906g, T4918A, A4920T, C4929T, T4933A, A4935T, G4944T, C4953T,
T4994A, T4994G, G5004T, G5007T, G5022T, A5025T, G5031T, T5035A, C5044A, C5044g,
G5049T, A5061T, A5064T, G5097T, G5100T, C5117A, C5117G, A5118T, A5127T, A5130T,
T5146A, T5146g, G5163T, G5166T, A5187T, G5199T, T5210A, G5211T, A5223T, T5228A,
T5228G, G5235T, G5244T, G5247T, A5250T, G5254A, G5255A, T5267A, T5267G, G5272A,
G5273A, C5280T, A5289T, G5292T, A5295T, A5298T, G5310T, G5322T, A5328T, G5331T,
G5346T, A5349T, C5358T, A5367T, C5370T, A5376T, G5379T, C5385T, A5391T, A5394T,
G5412T, T5420A, C5423A, T5426A, T5426G, C5454T, G5460T, G5464A, G5465A, C5472T,
T5480A, A5496T, G5499T, C5506A, C5506g, C5509A, C5509g, C5550T, G5563A, G5564A,
G5568T, C5595T, T5603A, G5604T, C5622T, G5625T, G5629A, G5630A, T5635A, C5654A,
C5654G, C5655T, C5660A, C5661T, G5664T, C5678A, C5678G, C5688T, C5708A, C5708G,
G5710A.
|
[0227]
19
TABLE 9
|
|
|
List of One Base deletions
|
|
|
124delA, 125delT, 126delT, 127delT, 128delA, 129delT, 130delC, 131delT, 132delG, 133delC,
|
134delT, 135delC, 136delT, 137delT, 138delC, 139delG, 140delC, 141delG, 142delT, 143delT,
|
144delG, 145delA, 146delA, 147delG, 148delA, 149delA, 150delG, 151delT, 152delA, 153delC,
|
154delA, 155delA, 156delA, 157delA, 158delT, 159delG, 160delT, 161delC, 162delA, 163delT,
|
164delT, 165delA, 166delA, 167delT, 168delG, 169delC, 170delT, 171delA, 172delT, 173delG,
|
174delC, 175delA, 176delG, 177delA, 178delA, 179delA, 180delA, 181delT, 182delC, 183delT,
|
184delT, 185delA, 186delG, 187delA, 188delG, 189delT, 190delG, 191delT, 192delC, 193delC,
|
194delC, 195delA, 196delT, 197delC, 198delT, 199delG, 200delT, 201delC, 202delT, 203delG,
|
204delG, 205delA, 206delG, 207delT, 208delT, 209delG, 210delA, 211delT, 212delC, 213delA,
|
214delA, 215delG, 216delG, 217delA, 218delA, 219delC, 220delC, 221delT, 222delG, 223delT,
|
224delC, 225delT, 226delC, 227delC, 228delA, 229delC, 230delA, 231delA, 232delA, 233delG,
|
234delT, 235delG, 236delT, 237delG, 238delA, 239delC, 240delC, 241delA, 242delC, 243delA,
|
244delT, 245delA, 246delT, 247delT, 248delT, 249delT, 250delG, 251delC, 252delA, 253delA,
|
254delA, 255delT, 256delT, 257delT, 258delT, 259delG, 260delC, 261delA, 262delT, 263delG,
|
264delC, 265delT, 266delG, 267delA, 268delA, 269delA, 270delC, 271delT, 272delT, 273delC,
|
274delT, 275delC, 276delA, 277delA, 278delC, 279delC, 280delA, 281delG, 282delA, 283delA,
|
284delG, 285delA, 286delA, 287delA, 288delG, 289delG, 290delG, 291delC, 292delC, 293delT,
|
294delT, 295delC, 296delA, 297delC, 298delA, 299delG, 300delT, 301delG, 302delT, 303delC,
|
304delC, 305delT, 306delT, 307delT, 308delA, 309delT, 310delG, 311delT, 312delA, 313delA,
|
314delG, 315delA, 316delA, 317delT, 318delG, 319delA, 320delT, 321delA, 322delT, 323delA,
|
324delA, 325delC, 326delC, 327delA, 328delA, 329delA, 330delA, 331delG, 332delG,
|
333delA, 334delG, 335delC, 336delC, 337delT, 338delA, 339delC, 340delA, 341delA, 342delG,
|
343delA, 344delA, 345delA, 346delG, 347delT, 348delA, 349delC, 350delG, 351delA, 352delG,
|
353delA, 354delT, 355delT, 356delT, 357delA, 358delG, 359delT, 360delC, 361delA, 362delA,
|
363delC, 364delT, 365delT, 366delG, 367delT, 368delT, 369delG, 370delA, 371delA, 372delG,
|
373delA, 374delG, 375delC, 376delT, 377delA, 378delT, 379delT, 380delG, 381delA, 382delA,
|
383delA, 384delA, 385delT, 386delC, 387delA, 388delT, 389delT, 390delT, 391delG, 392delT,
|
393delG, 394delC, 395delT, 396delT, 397delT, 398delT, 399delC, 400delA, 401delG, 402delC,
|
403delT, 404delT, 405delG, 406delA, 407delC, 408delA, 409delC, 410delA, 411delG, 412delG,
|
413delT, 414delT, 415delT, 416delG, 417delG, 418delA, 419delG, 420delT, 421delA, 422delT,
|
423delG, 424delC, 425delA, 426delA, 427delA, 428delC, 429delA, 430delG, 431delC, 432delT,
|
433delA, 434delT, 435delA, 436delA, 437delT, 438delT, 439delT, 440delT, 441delG, 442delC,
|
443delA, 444delA, 445delA, 446delA, 447delA, 448delA, 449delG, 450delG, 451delA,
|
452delA, 453delA, 454delA, 455delT, 456delA, 457delA, 458delC, 459delT, 460delC, 461delT,
|
462delC, 463delC, 464delT, 465delG, 466delA, 467delA, 468delC, 469delA, 470delT, 471delC,
|
472delT, 473delA, 474delA, 475delA, 476delA, 477delG, 478delA, 479delT, 480delG, 481delA,
|
482delA, 483delG, 484delT, 485delT, 486delT, 487delC, 488delT, 489delA, 490delT, 491delC,
|
492delA, 493delT, 494delC, 495delC, 496delA, 497delA, 498delA, 499delG, 500delT, 501delA,
|
502delT, 503delG, 504delG, 505delG, 506delC, 507delT, 508delA, 509delC, 510delA, 511delG,
|
512delA, 513delA, 514delA, 515delC, 516delC, 517delG, 518delT, 519delG, 520delC, 521delC,
|
522delA, 523delA, 524delA, 525delA, 526delG, 527delA, 528delC, 529delT, 530delT, 531delC,
|
532delT, 533delA, 534delC, 535delA, 536delG, 537delA, 538delG, 539delT, 540delG, 541delA,
|
542delA, 543delC, 544delC, 545delC, 546delG, 547delA, 548delA, 549delA, 550delA, 551delT,
|
552delC, 553delC, 554delT, 555delT, 556delC, 557delC, 558delT, 559delT, 560delG, 561delC,
|
562delA, 563delG, 564delG, 565delA, 566delA, 567delA, 568delC, 569delC, 570delA,
|
571delG, 572delT, 573delC, 574delT, 575delC, 576delA, 577delG, 578delT, 579delG, 580delT,
|
581delC, 582delC, 583delA, 584delA, 585delC, 586delT, 587delC, 588delT, 589delC, 590delT,
|
591delA, 592delA, 593delC, 594delC, 595delT, 596delT, 597delG, 598delG, 599delA, 600delA,
|
601delC, 602delT, 603delG, 604delT, 605delG, 606delA, 607delG, 608delA, 609delA, 610delC,
|
611delT, 612delC, 613delT, 614delG, 615delA, 616delG, 617delG, 618delA, 619delC, 620delA,
|
621delA, 622delA, 623delG, 624delC, 625delA, 626delG, 627delC, 628delG, 629delG,
|
630delA, 631delT, 632delA, 633delC, 634delA, 635delA, 636delC, 637delC, 638delT, 639delC,
|
640delA, 641delA, 642delA, 643delA, 644delG, 645delA, 646delC, 647delG, 648delT, 649delC,
|
650delT, 651delG, 652delT, 653delC, 654delT, 655delA, 656delC, 657delA, 658delT, 659delT,
|
660delG, 661delA, 662delA, 663delT, 664delT, 665delG, 666delG, 667delG, 668delA, 669delT,
|
670delC, 671delT, 672delG, 673delA, 674delT, 675delT, 676delC, 677delT, 678delT, 679delC,
|
680delT, 681delG, 682delA, 683delA, 684delG, 685delA, 686delT, 687delA, 688delC, 689delC,
|
690delG, 691delT, 692delT, 693delA, 694delA, 695delT, 696delA, 697delA, 698delG, 699delG,
|
700delC, 701delA, 702delA, 703delC, 704delT, 705delT, 706delA, 707delT, 708delT, 709delG,
|
710delC, 711delA, 712delG, 713delT, 714delG, 715delT, 716delG, 717delG, 718delG, 719delA,
|
720delG, 721delA, 722delT, 723delC, 724delA, 725delA, 726delG, 727delA, 728delA, 729delT,
|
730delT, 731delG, 732delT, 733delT, 734delA, 735delC, 736delA, 737delA, 738delA, 739delT,
|
740delC, 741delA, 742delC, 743delC, 744delC, 745delC, 746delT, 747delC, 748delA, 749delA,
|
750delG, 751delG, 752delA, 753delA, 754delC, 755delC, 756delA, 757delG, 758delG,
|
759delG, 760delA, 761delT, 762delG, 763delA, 764delA, 765delA, 766delT, 767delC, 768delA,
|
769delG, 770delT, 771delT, 772delT, 773delG, 774delG, 775delA, 776delT, 777delT, 778delC,
|
779delT, 780delG, 781delC, 782delA, 783delA, 784delA, 785delA, 786delA, 787delA, 788delG,
|
789delG, 790delC, 791delT, 792delG, 793delC, 794delT, 795delT, 796delG, 797delT, 798delG,
|
799delA, 800delA, 801delT, 802delT, 803delT, 804delT, 805delC, 806delT, 807delG, 808delA,
|
809delG, 810delA, 811delC, 812delG, 813delG, 814delA, 815delT, 816delG, 817delT, 818delA,
|
819delA, 820delC, 821delA, 822delA, 823delA, 824delT, 825delA, 826delC, 827delT, 828delG,
|
829delA, 830delA, 831delC, 832delA, 833delT, 834delC, 835delA, 836delT, 837delC, 838delA,
|
839delA, 840delC, 841delC, 842delC, 843delA, 844delG, 845delT, 846delA, 847delA, 848delT,
|
849delA, 850delA, 851delT, 852delG, 853delA, 854delT, 855delT, 856delT, 857delG, 858delA,
|
859delA, 860delC, 861delA, 862delC, 863delC, 864delA, 865delC, 866delT, 867delG, 868delA,
|
869delG, 870delA, 871delA, 872delG, 873delC, 874delG, 875delT, 876delG, 877delC, 878delA,
|
879delG, 880delC, 881delT, 882delG, 883delA, 884delG, 885delA, 886delG, 887delG, 888delC,
|
889delA, 890delT, 891delC, 892delC, 893delA, 894delG, 895delA, 896delA, 897delA, 898delA,
|
899delG, 900delT, 901delA, 902delT, 903delC, 904delA, 905delG, 906delG, 907delG, 908delT,
|
909delA, 910delG, 911delT, 912delT, 913delC, 914delT, 915delG, 916delT, 917delT, 918delT,
|
919delC, 920delA, 921delA, 922delA, 923delC, 924delT, 925delT, 926delG, 927delC, 928delA,
|
929delT, 930delG, 931delT, 932delG, 933delG, 934delA, 935delG, 936delC, 937delC, 938delA,
|
939delT, 940delG, 941delT, 942delG, 943delG, 944delC, 945delA, 946delC, 947delA, 948delA,
|
949delA, 950delT, 951delA, 952delC, 953delT, 954delC, 955delA, 956delT, 957delG, 958delC,
|
959delC, 960delA, 961delG, 962delC, 963delT, 964delC, 965delA, 966delT, 967delT, 968delA,
|
969delC, 970delA, 971delG, 972delC, 973delA, 974delT, 975delG, 976delA, 977delG, 978delA,
|
979delA, 980delC, 981delA, 982delG, 983delC, 984delA, 985delG, 986delT, 987delT, 988delT,
|
989delA, 990delT, 991delT, 992delA, 993delC, 994delT, 995delC, 996delA, 997delC, 998delT,
|
999delA, 1000delA, 1001delA, 1002delG, 1003delA, 1004delC, 1005delA, 1006delG,
|
1007delA, 1008delA, 1009delT, 1010delG, 1011delA, 1012delA, 1013delT, 1014delG,
|
1015delT, 1016delA, 1017delG, 1018delA, 1019delA, 1020delA, 1021delA, 1022delG,
|
1023delG, 1024delC, 1025delT, 1026delG, 1027delA, 1028delA, 1029delT, 1030delT,
|
1031delC, 1032delT, 1033delG, 1034delT, 1035delA, 1036delA, 1037delT, 1038delA,
|
1039delA, 1040delA, 1041delA, 1042delG, 1043delC, 1044delA, 1045delA, 1046delA,
|
1047delC, 1048delA, 1049delG, 1050delC, 1051delC, 1052delT, 1053delG, 1054delG,
|
1055delC, 1056delT, 1057delT, 1058delA, 1059delG, 1060delC, 1061delA, 1062delA,
|
1063delG, 1064delG, 1065delA, 1066delG, 1067delC, 1068delC, 1069delA, 1070delA,
|
1071delC, 1072delA, 1073delT, 1074delA, 1075delA, 1076delC, 1077delA, 1078delG,
|
1079delA, 1080delT, 1081delG, 1082delG, 1083delG, 1084delC, 1085delT, 1086delG,
|
1087delG, 1088delA, 1089delA, 1090delG, 1091delT, 1092delA, 1093delA, 1094delG,
|
1095delG, 1096delA, 1097delA, 1098delA, 1099delC, 1100delA, 1101delT, 1102delG,
|
1103delT, 1104delA, 1105delA, 1106delT, 1107delG, 1108delA, 1109delT, 1110delA,
|
1111delG, 1112delG, 1113delC, 1114delG, 1115delG, 1116delA, 1117delC, 1118delT,
|
1119delC, 1120delC, 1121delC, 1122delA, 1123delG, 1124delC, 1125delA, 1126delC,
|
1127delA, 1128delG, 1129delA, 1130delA, 1131delA, 1132delA, 1133delA, 1134delA,
|
1135delA, 1136delG, 1137delG, 1138delT, 1139delA, 1140delG, 1141delA, 1142delT,
|
1143delC, 1144delT, 1145delG, 1146delA, 1147delA, 1148delT, 1149delG, 1150delC,
|
1151delT, 1152delG, 1153delA, 1154delT, 1155delC, 1156delC, 1157delC, 1158delC,
|
1159delT, 1160delG, 1161delT, 1162delG, 1163delT, 1164delG, 1165delA, 1166delG,
|
1167delA, 1168delG, 1169delA, 1170delA, 1171delA, 1172delA, 1173delG, 1174delA,
|
1175delA, 1176delT, 1177delG, 1178delG, 1179delA, 1180delA, 1181delT, 1182delA,
|
1183delA, 1184delG, 1185delC, 1186delA, 1187delG, 1188delA, 1189delA, 1190delA,
|
1191delC, 1192delT, 1193delG, 1194delC, 1195delC, 1196delA, 1197delT, 1198delG,
|
1199delC, 1200delT, 1201delC, 1202delA, 1203delG, 1204delA, 1205delG, 1206delA,
|
1207delA, 1208delT, 1209delC, 1210delC, 1211delT, 1212delA, 1213delG, 1214delA,
|
1215delG, 1216delA, 1217delT, 1218delA, 1219delC, 1220delT, 1221delG, 1222delA,
|
1223delA, 1224delG, 1225delA, 1226delT, 1227delG, 1228delT, 1229delT, 1230delC,
|
1231delC, 1232delT, 1233delT, 1234delG, 1235delG, 1236delA, 1237delT, 1238delA,
|
1239delA, 1240delC, 1241delA, 1242delC, 1243delT, 1244delA, 1245delA, 1246delA,
|
1247delT, 1248delA, 1249delG, 1250delC, 1251delA, 1252delG, 1253delC, 1254delA,
|
1255delT, 1256delT, 1257delC, 1258delA, 1259delG, 1260delA, 1261delA, 1262delA,
|
1263delG, 1264delT, 1265delT, 1266delA, 1267delA, 1268delT, 1269delG, 1270delA,
|
1271delG, 1272delT, 1273delG, 1274delG, 1275delT, 1276delT, 1277delT, 1278delT,
|
1279delC, 1280delC, 1281delA, 1282delG, 1283delA, 1284delA, 1285delG, 1286delT,
|
1287delG, 1288delA, 1289delT, 1290delG, 1291delA, 1292delA, 1293delC, 1294delT,
|
1295delG, 1296delT, 1297delT, 1298delA, 1299delG, 1300delG, 1301delT, 1302delT,
|
1303delC, 1304delT, 1305delG, 1306delA, 1307delT, 1308delG, 1309delA, 1310delC,
|
1311delT, 1312delC, 1313delA, 1314delC, 1315delA, 1316delT, 1317delG, 1318delA,
|
1319delT, 1320delG, 1321delG, 1322delG, 1323delG, 1324delA, 1325delG, 1326delT,
|
1327delC, 1328delT, 1329delG, 1330delA, 1331delA, 1332delT, 1333delC, 1334delA,
|
1335delA, 1336delA, 1337delT, 1338delG, 1339delC, 1340delC, 1341delA, 1342delA,
|
1343delA, 1344delG, 1345delT, 1346delA, 1347delG, 1348delC, 1349delT, 1350delG,
|
1351delA, 1352delT, 1353delG, 1354delT, 1355delA, 1356delT, 1357delT, 1358delG,
|
1359delG, 1360delA, 1361delC, 1362delG, 1363delT, 1364delT, 1365delC, 1366delT,
|
1367delA, 1368delA, 1369delA, 1370delT, 1371delG, 1372delA, 1373delG, 1374delG,
|
1375delT, 1376delA, 1377delG, 1378delA, 1379delT, 1380delG, 1381delA, 1382delA,
|
1383delT, 1384delA, 1385delT, 1386delT, 1387delC, 1388delT, 1389delG, 1390delG,
|
1391delT, 1392delT, 1393delC, 1394delT, 1395delT, 1396delC, 1397delA, 1398delG,
|
1399delA, 1400delG, 1401delA, 1402delA, 1403delA, 1404delA, 1405delT, 1406delA,
|
1407delG, 1408delA, 1409delC, 1410delT, 1411delT, 1412delA, 1413delC, 1414delT,
|
1415delG, 1416delG, 1417delC, 1418delC, 1419delA, 1420delG, 1421delT, 1422delG,
|
1423delA, 1424delT, 1425delC, 1426delC, 1427delT, 1428delC, 1429delA, 1430delT,
|
1431delG, 1432delA, 1433delG, 1434delG, 1435delC, 1436delT, 1437delT, 1438delT,
|
1439delA, 1440delA, 1441delT, 1442delA, 1443delT, 1444delG, 1445delT, 1446delA,
|
1447delA, 1448delA, 1449delA, 1450delG, 1451delT, 1452delG, 1453delA, 1454delA,
|
1455delA, 1456delG, 1457delA, 1458delG, 1459delT, 1460delT, 1461delC, 1462delA,
|
1463delC, 1464delT, 1465delC, 1466delC, 1467delA, 1468delA, 1469delA, 1470delT,
|
1471delC, 1472delA, 1473delG, 1474delT, 1475delA, 1476delG, 1477delA, 1478delG,
|
1479delA, 1480delG, 1481delT, 1482delA, 1483delA, 1484delT, 1485delA, 1486delT,
|
1487delT, 1488delG, 1489delA, 1490delA, 1491delG, 1492delA, 1493delC, 1494delA,
|
1495delA, 1496delA, 1497delA, 1498delT, 1499delA, 1500delT, 1501delT, 1502delT,
|
1503delG, 1504delG, 1505delG, 1506delA, 1507delA, 1508delA, 1509delA, 1510delC,
|
1511delC, 1512delT, 1513delA, 1514delT, 1515delC, 1516delG, 1517delG, 1518delA,
|
1519delA, 1520delG, 1521delA, 1522delA, 1523delG, 1524delG, 1525delC, 1526delA,
|
1527delA, 1528delG, 1529delC, 1530delC, 1531delT, 1532delC, 1533delC, 1534delC,
|
1535delC, 1536delA, 1537delA, 1538delC, 1539delT, 1540delT, 1541delA, 1542delA,
|
1543delG, 1544delC, 1545delC, 1546delA, 1547delT, 1548delG, 1549delT, 1550delA,
|
1551delA, 1552delC, 1553delT, 1554delG, 1555delA, 1556delA, 1557delA, 1558delA,
|
1559delT, 1560delC, 1561delT, 1562delA, 1563delA, 1564delT, 1565delT, 1566delA,
|
1567delT, 1568delA, 1569delG, 1570delG, 1571delA, 1572delG, 1573delC, 1574delA,
|
1575delT, 1576delT, 1577delT, 1578delG, 1579delT, 1580delT, 1581delA, 1582delC, 1583delT,
|
1584delG, 1585delA, 1586delG, 1587delC, 1588delC, 1589delA, 1590delC, 1591delA,
|
1592delG, 1593delA, 1594delT, 1595delA, 1596delA, 1597delT, 1598delA, 1599delC,
|
1600delA, 1601delA, 1602delG, 1603delA, 1604delG, 1605delC, 1606delG, 1607delT,
|
1608delC, 1609delC, 1610delC, 1611delC, 1612delT, 1613delC, 1614delA, 1615delC,
|
1616delA, 1617delA, 1618delA, 1619delT, 1620delA, 1621delA, 1622delA, 1623delT,
|
1624delT, 1625delA, 1626delA, 1627delA, 1628delG, 1629delC, 1630delG, 1631delT,
|
1632delA, 1633delA, 1634delA, 1635delA, 1636delG, 1637delG, 1638delA, 1639delG,
|
1640delA, 1641delC, 1642delC, 1643delT, 1644delA, 1645delC, 1646delA, 1647delT,
|
1648delC, 1649delA, 1650delG, 1651delG, 1652delC, 1653delC, 1654delT, 1655delT,
|
1656delC, 1657delA, 1658delT, 1659delC, 1660delC, 1661delT, 1662delG, 1663delA,
|
1664delG, 1665delG, 1666delA, 1667delT, 1668delT, 1669delT, 1670delT, 1671delA,
|
1672delT, 1673delC, 1674delA, 1675delA, 1676delG, 1677delA, 1678delA, 1679delA,
|
1680delG, 1681delC, 1682delA, 1683delG, 1684delA, 1685delT, 1686delT, 1687delT,
|
1688delG, 1689delG, 1690delC, 1691delA, 1692delG, 1693delT, 1694delT, 1695delC,
|
1696delA, 1697delA, 1698delA, 1699delA, 1700delG, 1701delA, 1702delC, 1703delT,
|
1704delC, 1705delC, 1706delT, 1707delG, 1708delA, 1709delA, 1710delA, 1711delT,
|
1712delG, 1713delA, 1714delT, 1715delA, 1716delA, 1717delA, 1718delT, 1719delC,
|
1720delA, 1721delG, 1722delG, 1723delG, 1724delA, 1725delA, 1726delC, 1727delT,
|
1728delA, 1729delA, 1730delC, 1731delC, 1732delA, 1733delA, 1734delA, 1735delC,
|
1736delG, 1737delG, 1738delA, 1739delG, 1740delC, 1741delA, 1742delG, 1743delA,
|
1744delA, 1745delT, 1746delG, 1747delG, 1748delT, 1749delC, 1750delA, 1751delA,
|
1752delG, 1753delT, 1754delG, 1755delA, 1756delT, 1757delG, 1758delA, 1759delA,
|
1760delT, 1761delA, 1762delT, 1763delT, 1764delA, 1765delC, 1766delT, 1767delA,
|
1768delA, 1769delT, 1770delA, 1771delG, 1772delT, 1773delG, 1774delG, 1775delT,
|
1776delC, 1777delA, 1778delT, 1779delG, 1780delA, 1781delG, 1782delA, 1783delA,
|
1784delT, 1785delA, 1786delA, 1787delA, 1788delA, 1789delC, 1790delA, 1791delA,
|
1792delA, 1793delA, 1794delG, 1795delG, 1796delT, 1797delG, 1798delA, 1799delT,
|
1800delT, 1801delC, 1802delT, 1803delA, 1804delT, 1805delT, 1806delC, 1807delA,
|
1808delG, 1809delA, 1810delA, 1811delT, 1812delG, 1813delA, 1814delG, 1815delA,
|
1816delA, 1817delA, 1818delA, 1819delA, 1820delT, 1821delC, 1822delC, 1823delT,
|
1824delA, 1825delA, 1826delC, 1827delC, 1828delC, 1829delA, 1830delA, 1831delT,
|
1832delA, 1833delG, 1834delA, 1835delA, 1836delT, 1837delC, 1838delA, 1839delC,
|
1840delT, 1841delC, 1842delG, 1843delA, 1844delA, 1845delA, 1846delA, 1847delA,
|
1848delG, 1849delA, 1850delA, 1851delT, 1852delC, 1853delT, 1854delG, 1855delC,
|
1856delT, 1857delT, 1858delT, 1859delC, 1860delA, 1861delA, 1862delA, 1863delA,
|
1864delC, 1865delG, 1866delA, 1867delA, 1868delA, 1869delG, 1870delC, 1871delT,
|
1872delG, 1873delA, 1874delA, 1875delC, 1876delC, 1877delT, 1878delA, 1879delT,
|
1880delA, 1881delA, 1882delG, 1883delC, 1884delA, 1885delG, 1886delC, 1887delA,
|
1888delG, 1889delT, 1890delA, 1891delT, 1892delA, 1893delA, 1894delG, 1895delC,
|
1896delA, 1897delA, 1898delT, 1899delA, 1900delT, 1901delG, 1902delG, 1903delA,
|
1904delA, 1905delC, 1906delT, 1907delC, 1908delG, 1909delA, 1910delA, 1911delT,
|
1912delT, 1913delA, 1914delA, 1915delA, 1916delT, 1917delA, 1918delT, 1919delC,
|
1920delC, 1921delA, 1922delC, 1923delA, 1924delA, 1925delT, 1926delT, 1927delC,
|
1928delA, 1929delA, 1930delA, 1931delA, 1932delG, 1933delC, 1934delA, 1935delC,
|
1936delC, 1937delT, 1938delA, 1939delA, 1940delA, 1941delA, 1942delA, 1943delG,
|
1944delA, 1945delA, 1946delT, 1947delA, 1948delG, 1949delG, 1950delC, 1951delT,
|
1952delG, 1953delA, 1954delG, 1955delG, 1956delA, 1957delG, 1958delG, 1959delA,
|
1960delA, 1961delG, 1962delT, 1963delC, 1964delT, 1965delT, 1966delC, 1967delT,
|
1968delA, 1969delC, 1970delC, 1971delA, 1972delG, 1973delG, 1974delC, 1975delA,
|
1976delT, 1977delA, 1978delT, 1979delT, 1980delC, 1981delA, 1982delT, 1983delG,
|
1984delC, 1985delG, 1986delC, 1987delT, 1988delT, 1989delG, 1990delA, 1991delA,
|
1992delC, 1993delT, 1994delA, 1995delG, 1996delT, 1997delA, 1998delG, 1999delT,
|
2000delC, 2001delA, 2002delG, 2003delT, 2004delA, 2005delG, 2006delA, 2007delA,
|
2008delA, 2009delT, 2010delC, 2011delT, 2012delA, 2013delA, 2014delG, 2015delC,
|
2016delC, 2017delC, 2018delA, 2019delC, 2020delC, 2021delT, 2022delA, 2023delA,
|
2024delT, 2025delT, 2026delG, 2027delT, 2028delA, 2029delC, 2030delT, 2031delG,
|
2032delA, 2033delA, 2034delT, 2035delT, 2036delG, 2037delC, 2038delA, 2039delA,
|
2040delA, 2041delT, 2042delT, 2043delG, 2044delA, 2045delT, 2046delA, 2047delG,
|
2048delT, 2049delT, 2050delG, 2051delT, 2052delT, 2053delC, 2054delT, 2055delA,
|
2056delG, 2057delC, 2058delA, 2059delG, 2060delT, 2061delG, 2062delA, 2063delA,
|
2064delG, 2065delA, 2066delG, 2067delA, 2068delT, 2069delA, 2070delA, 2071delA,
|
2072delG, 2073delA, 2074delA, 2075delA, 2076delA, 2077delA, 2078delA, 2079delA,
|
2080delA, 2081delG, 2082delT, 2083delA, 2084delC, 2085delA, 2086delA, 2087delC,
|
2088delC, 2089delA, 2090delA, 2091delA, 2092delT, 2093delG, 2094delC, 2095delC,
|
2096delA, 2097delG, 2098delT, 2099delC, 2100delA, 2101delG, 2102delG, 2103delC,
|
2104delA, 2105delC, 2106delA, 2107delG, 2108delC, 2109delA, 2110delG, 2111delA,
|
2112delA, 2113delA, 2114delC, 2115delC, 2116delT, 2117delA, 2118delC, 2119delA,
|
2120delA, 2121delC, 2122delT, 2123delC, 2124delA, 2125delT, 2126delG, 2127delG,
|
2128delA, 2129delA, 2130delG, 2131delG, 2132delT, 2133delA, 2134delA, 2135delA,
|
2136delG, 2137delA, 2138delA, 2139delC, 2140delC, 2141delT, 2142delG, 2143delC,
|
2144delA, 2145delA, 2146delC, 2147delT, 2148delG, 2149delG, 2150delA, 2151delG,
|
2152delC, 2153delC, 2154delA, 2155delA, 2156delG, 2157delA, 2158delA, 2159delG,
|
2160delA, 2161delG, 2162delT, 2163delA, 2164delA, 2165delC, 2166delA, 2167delA,
|
2168delG, 2169delC, 2170delC, 2171delA, 2172delA, 2173delA, 2174delT, 2175delG,
|
2176delA, 2177delA, 2178delC, 2179delA, 2180delG, 2181delA, 2182delC, 2183delA,
|
2184delA, 2185delG, 2186delT, 2187delA, 2188delA, 2189delA, 2190delA, 2191delG,
|
2192delA, 2193delC, 2194delA, 2195delT, 2196delG, 2197delA, 2198delC, 2199delA,
|
2200delG, 2201delT, 2202delG, 2203delA, 2204delT, 2205delA, 2206delC, 2207delT,
|
2208delT, 2209delT, 2210delC, 2211delC, 2212delC, 2213delA, 2214delG, 2215delA,
|
2216delG, 2217delC, 2218delT, 2219delG, 2220delA, 2221delA, 2222delG, 2223delT,
|
2224delT, 2225delA, 2226delA, 2227delC, 2228delA, 2229delA, 2230delA, 2231delT,
|
2232delG, 2233delC, 2234delA, 2235delC, 2236delC, 2237delT, 2238delG, 2239delG,
|
2240delT, 2241delT, 2242delC, 2243delT, 2244delT, 2245delT, 2246delT, 2247delA, 2248delC,
|
2249delT, 2250delA, 2251delA, 2252delG, 2253delT, 2254delG, 2255delT, 2256delT,
|
2257delC, 2258delA, 2259delA, 2260delA, 2261delT, 2262delA, 2263delC, 2264delC,
|
2265delA, 2266delG, 2267delT, 2268delG, 2269delA, 2270delA, 2271delC, 2272delT,
|
2273delT, 2274delA, 2275delA, 2276delA, 2277delG, 2278delA, 2279delA, 2280delT,
|
2281delT, 2282delT, 2283delG, 2284delT, 2285delC, 2286delA, 2287delA, 2288delT,
|
2289delC, 2290delC, 2291delT, 2292delA, 2293delG, 2294delC, 2295delC, 2296delT,
|
2297delT, 2298delC, 2299delC, 2300delA, 2301delA, 2302delG, 2303delA, 2304delG,
|
2305delA, 2306delA, 2307delG, 2308delA, 2309delA, 2310delA, 2311delA, 2312delA,
|
2313delG, 2314delA, 2315delA, 2316delG, 2317delA, 2318delG, 2319delA, 2320delA,
|
2321delA, 2322delC, 2323delT, 2324delA, 2325delG, 2326delA, 2327delA, 2328delA,
|
2329delC, 2330delA, 2331delG, 2332delT, 2333delT, 2334delA, 2335delA, 2336delA,
|
2337delG, 2338delT, 2339delG, 2340delT, 2341delC, 2342delT, 2343delA, 2344delA,
|
2345delT, 2346delA, 2347delA, 2348delT, 2349delG, 2350delC, 2351delT, 2352delG,
|
2353delA, 2354delA, 2355delG, 2356delA, 2357delC, 2358delC, 2359delC, 2360delC,
|
2361delA, 2362delA, 2363delA, 2364delG, 2365delA, 2366delT, 2367delC, 2368delT,
|
2369delC, 2370delA, 2371delT, 2372delG, 2373delT, 2374delT, 2375delA, 2376delA,
|
2377delG, 2378delT, 2379delG, 2380delG, 2381delA, 2382delG, 2383delA, 2384delA,
|
2385delA, 2386delG, 2387delG, 2388delG, 2389delT, 2390delT, 2391delT, 2392delT,
|
2393delG, 2394delC, 2395delA, 2396delA, 2397delA, 2398delC, 2399delT, 2400delG,
|
2401delA, 2402delA, 2403delA, 2404delG, 2405delA, 2406delT, 2407delC, 2408delT,
|
2409delG, 2410delT, 2411delA, 2412delG, 2413delA, 2414delG, 2415delA, 2416delG,
|
2417delT, 2418delA, 2419delG, 2420delC, 2421delA, 2422delG, 2423delT, 2424delA,
|
2425delT, 2426delT, 2427delT, 2428delC, 2429delA, 2430delC, 2431delT, 2432delG,
|
2433delG, 2434delT, 2435delA, 2436delC, 2437delC, 2438delT, 2439delG, 2440delG,
|
2441delT, 2442delA, 2443delC, 2444delT, 2445delG, 2446delA, 2447delT, 2448delT,
|
2449delA, 2450delT, 2451delG, 2452delG, 2453delC, 2454delA, 2455delC, 2456delT,
|
2457delC, 2458delA, 2459delG, 2460delG, 2461delA, 2462delA, 2463delA, 2464delG,
|
2465delT, 2466delA, 2467delT, 2468delC, 2469delT, 2470delC, 2471delG, 2472delT,
|
2473delT, 2474delA, 2475delC, 2476delT, 2477delG, 2478delG, 2479delA, 2480delA,
|
2481delG, 2482delT, 2483delT, 2484delA, 2485delG, 2486delC, 2487delA, 2488delC,
|
2489delT, 2490delC, 2491delT, 2492delA, 2493delG, 2494delG, 2495delG, 2496delA,
|
2497delA, 2498delG, 2499delG, 2500delC, 2501delA, 2502delA, 2503delA, 2504delA,
|
2505delA, 2506delC, 2507delA, 2508delG, 2509delA, 2510delA, 2511delC, 2512delC,
|
2513delA, 2514delA, 2515delA, 2516delT, 2517delA, 2518delA, 2519delA, 2520delT,
|
2521delG, 2522delT, 2523delG, 2524delT, 2525delG, 2526delA, 2527delG, 2528delT,
|
2529delC, 2530delA, 2531delG, 2532delT, 2533delG, 2534delT, 2535delG, 2536delC,
|
2537delA, 2538delG, 2539delC, 2540delA, 2541delT, 2542delT, 2543delT, 2544delG,
|
2545delA, 2546delA, 2547delA, 2548delA, 2549delC, 2550delC, 2551delC, 2552delC,
|
2553delA, 2554delA, 2555delG, 2556delG, 2557delG, 2558delA, 2559delC, 2560delT,
|
2561delA, 2562delA, 2563delT, 2564delT, 2565delC, 2566delA, 2567delT, 2568delG,
|
2569delG, 2570delT, 2571delT, 2572delG, 2573delT, 2574delT, 2575delC, 2576delC,
|
2577delA, 2578delA, 2579delA, 2580delG, 2581delA, 2582delT, 2583delA, 2584delA,
|
2585delT, 2586delA, 2587delG, 2588delA, 2589delA, 2590delA, 2591delT, 2592delG,
|
2593delA, 2594delC, 2595delA, 2596delC, 2597delA, 2598delG, 2599delA, 2600delA,
|
2601delG, 2602delG, 2603delC, 2604delT, 2605delT, 2606delT, 2607delA, 2608delA,
|
2609delG, 2610delT, 2611delA, 2612delT, 2613delC, 2614delC, 2615delA, 2616delT,
|
2617delT, 2618delG, 2619delG, 2620delG, 2621delA, 2622delC, 2623delA, 2624delT,
|
2625delG, 2626delA, 2627delA, 2628delG, 2629delT, 2630delT, 2631delA, 2632delA,
|
2633delC, 2634delC, 2635delA, 2636delC, 2637delA, 2638delG, 2639delT, 2640delC,
|
2641delG, 2642delG, 2643delG, 2644delA, 2645delA, 2646delA, 2647delC, 2648delA,
|
2649delA, 2650delG, 2651delC, 2652delA, 2653delT, 2654delA, 2655delG, 2656delA,
|
2657delA, 2658delA, 2659delT, 2660delG, 2661delG, 2662delA, 2663delA, 2664delG,
|
2665delA, 2666delA, 2667delA, 2668delG, 2669delT, 2670delG, 2671delA, 2672delA,
|
2673delC, 2674delT, 2675delT, 2676delG, 2677delA, 2678delT, 2679delG, 2680delC,
|
2681delT, 2682delC, 2683delA, 2684delG, 2685delT, 2686delA, 2687delT, 2688delT,
|
2689delT, 2690delG, 2691delC, 2692delA, 2693delG, 2694delA, 2695delA, 2696delT,
|
2697delA, 2698delC, 2699delA, 2700delT, 2701delT, 2702delC, 2703delA, 2704delA,
|
2705delG, 2706delG, 2707delT, 2708delT, 2709delT, 2710delC, 2711delA, 2712delA,
|
2713delA, 2714delG, 2715delC, 2716delG, 2717delC, 2718delC, 2719delA, 2720delG,
|
2721delT, 2722delC, 2723delA, 2724delT, 2725delT, 2726delT, 2727delG, 2728delC,
|
2729delT, 2730delC, 2731delT, 2732delG, 2733delT, 2734delT, 2735delT, 2736delT, 2737delC,
|
2738delA, 2739delA, 2740delA, 2741delT, 2742delC, 2743delC, 2744delA, 2745delG,
|
2746delG, 2747delA, 2748delA, 2749delA, 2750delT, 2751delG, 2752delC, 2753delA,
|
2754delG, 2755delA, 2756delA, 2757delG, 2758delA, 2759delG, 2760delG, 2761delA,
|
2762delA, 2763delT, 2764delG, 2765delT, 2766delG, 2767delC, 2768delA, 2769delA,
|
2770delC, 2771delA, 2772delT, 2773delT, 2774delC, 2775delT, 2776delC, 2777delT,
|
2778delG, 2779delC, 2780delC, 2781delC, 2782delA, 2783delC, 2784delT, 2785delC,
|
2786delT, 2787delG, 2788delG, 2789delG, 2790delT, 2791delC, 2792delC, 2793delT,
|
2794delT, 2795delA, 2796delA, 2797delA, 2798delG, 2799delA, 2800delA, 2801delA,
|
2802delC, 2803delA, 2804delA, 2805delA, 2806delG, 2807delT, 2808delC, 2809delC,
|
2810delA, 2811delA, 2812delA, 2813delA, 2814delG, 2815delT, 2816delC, 2817delA,
|
2818delC, 2819delT, 2820delT, 2821delT, 2822delT, 2823delG, 2824delA, 2825delA,
|
2826delT, 2827delG, 2828delT, 2829delG, 2830delA, 2831delA, 2832delC, 2833delA,
|
2834delA, 2835delA, 2836delA, 2837delG, 2838delG, 2839delA, 2840delA, 2841delG,
|
2842delA, 2843delA, 2844delA, 2845delA, 2846delT, 2847delC, 2848delA, 2849delA,
|
2850delG, 2851delG, 2852delA, 2853delA, 2854delA, 2855delG, 2856delA, 2857delA,
|
2858delT, 2859delG, 2860delA, 2861delG, 2862delT, 2863delC, 2864delT, 2865delA,
|
2866delA, 2867delT, 2868delA, 2869delT, 2870delC, 2871delA, 2872delA, 2873delG,
|
2874delC, 2875delC, 2876delT, 2877delG, 2878delT, 2879delA, 2880delC, 2881delA,
|
2882delG, 2883delA, 2884delC, 2885delA, 2886delG, 2887delT, 2888delT, 2889delA,
|
2890delA, 2891delT, 2892delA, 2893delT, 2894delC, 2895delA, 2896delC, 2897delT,
|
2898delG, 2899delC, 2900delA, 2901delG, 2902delG, 2903delC, 2904delT, 2905delT,
|
2906delT, 2907delC, 2908delC, 2909delT, 2910delG, 2911delT, 2912delG, 2913delG,
|
2914delT, 2915delT, 2916delG, 2917delG, 2918delT, 2919delC, 2920delA, 2921delG,
|
2922delA, 2923delA, 2924delA, 2925delG, 2926delA, 2927delT, 2928delA, 2929delA,
|
2930delG, 2931delC, 2932delC, 2933delA, 2934delG, 2935delT, 2936delT, 2937delG,
|
2938delA, 2939delT, 2940delA, 2941delA, 2942delT, 2943delG, 2944delC, 2945delC,
|
2946delA, 2947delA, 2948delA, 2949delT, 2950delG, 2951delT, 2952delA, 2953delG,
|
2954delT, 2955delA, 2956delT, 2957delC, 2958delA, 2959delA, 2960delA, 2961delG,
|
2962delG, 2963delA, 2964delG, 2965delG, 2966delC, 2967delT, 2968delC, 2969delT,
|
2970delA, 2971delG, 2972delG, 2973delT, 2974delT, 2975delT, 2976delT, 2977delG,
|
2978delT, 2979delC, 2980delT, 2981delA, 2982delT, 2983delC, 2984delA, 2985delT,
|
2986delC, 2987delT, 2988delC, 2989delA, 2990delG, 2991delT, 2992delT, 2993delC,
|
2994delA, 2995delG, 2996delA, 2997delG, 2998delG, 2999delC, 3000delA, 3001delA,
|
3002delC, 3003delG, 3004delA, 3005delA, 3006delA, 3007delC, 3008delT, 3009delG,
|
3010delG, 3011delA, 3012delC, 3013delT, 3014delC, 3015delA, 3016delT, 3017delT,
|
3018delA, 3019delC, 3020delT, 3021delC, 3022delC, 3023delA, 3024delA, 3025delA,
|
3026delT, 3027delA, 3028delA, 3029delA, 3030delC, 3031delA, 3032delT, 3033delG,
|
3034delG, 3035delA, 3036delC, 3037delT, 3038delT, 3039delT, 3040delT, 3041delA,
|
3042delC, 3043delA, 3044delA, 3045delA, 3046delA, 3047delC, 3048delC, 3049delC,
|
3050delA, 3051delT, 3052delA, 3053delT, 3054delC, 3055delG, 3056delT, 3057delA,
|
3058delT, 3059delA, 3060delC, 3061delC, 3062delA, 3063delC, 3064delC, 3065delA,
|
3066delC, 3067delT, 3068delT, 3069delT, 3070delT, 3071delT, 3072delC, 3073delC, 3074delC,
|
3075delA, 3076delT, 3077delC, 3078delA, 3079delA, 3080delG, 3081delT, 3082delC,
|
3083delA, 3084delT, 3085delT, 3086delT, 3087delG, 3088delT, 3089delT, 3090delA,
|
3091delA, 3092delA, 3093delA, 3094delC, 3095delT, 3096delA, 3097delA, 3098delA,
|
3099delT, 3100delG, 3101delT, 3102delA, 3103delA, 3104delG, 3105delA, 3106delA,
|
3107delA, 3108delA, 3109delA, 3110delT, 3111delC, 3112delT, 3113delG, 3114delC,
|
3115delT, 3116delA, 3117delG, 3118delA, 3119delG, 3120delG, 3121delA, 3122delA,
|
3123delA, 3124delA, 3125delC, 3126delT, 3127delT, 3128delT, 3129delG, 3030delA,
|
3131delG, 3132delG, 3133delA, 3134delA, 3135delC, 3136delA, 3137delT, 3138delT,
|
3139delC, 3140delA, 3141delA, 3142delT, 3143delG, 3144delT, 3145delC, 3146delA,
|
3147delC, 3148delC, 3149delT, 3150delG, 3151delA, 3152delA, 3153delA, 3154delG,
|
3155delA, 3156delG, 3157delA, 3158delA, 3159delA, 3160delT, 3161delG, 3162delG,
|
3163delG, 3164delA, 3165delA, 3166delA, 3167delT, 3168delG, 3169delA, 3170delG,
|
3171delA, 3172delA, 3173delC, 3174delA, 3175delT, 3176delT, 3177delC, 3178delC,
|
3179delA, 3180delA, 3181delG, 3182delT, 3183delA, 3184delC, 3185delA, 3186delG,
|
3187delT, 3188delG, 3189delA, 3190delG, 3191delC, 3192delA, 3193delC, 3194delA,
|
3195delA, 3196delT, 3197delT, 3198delA, 3199delG, 3200delC, 3201delC, 3202delG,
|
3203delT, 3204delA, 3205delA, 3206delT, 3207delA, 3208delA, 3209delC, 3210delA,
|
3211delT, 3212delT, 3213delA, 3214delG, 3215delA, 3216delG, 3217delA, 3218delA,
|
3219delA, 3220delA, 3221delT, 3222delG, 3223delT, 3224delT, 3225delT, 3226delT,
|
3227delT, 3228delA, 3229delA, 3230delA, 3231delG, 3232delG, 3233delA, 3234delG,
|
3235delC, 3236delC, 3237delA, 3238delG, 3239delC, 3240delT, 3241delC, 3242delA,
|
3243delA, 3244delG, 3245delC, 3246delA, 3247delA, 3248delT, 3249delA, 3250delT,
|
3251delT, 3252delA, 3253delA, 3254delT, 3255delG, 3256delA, 3257delA, 3258delG,
|
3259delT, 3260delA, 3261delG, 3262delG, 3263delT, 3264delT, 3265delC, 3266delC,
|
3267delA, 3268delG, 3269delT, 3270delA, 3271delC, 3272delT, 3273delA, 3274delA,
|
3275delT, 3276delG, 3277delA, 3278delA, 3279delG, 3280delT, 3281delG, 3282delG,
|
3283delG, 3284delC, 3285delT, 3286delC, 3287delC, 3288delA, 3289delG, 3290delT,
|
3291delA, 3292delT, 3293delT, 3294delA, 3295delA, 3296delT, 3297delG, 3298delA,
|
3299delA, 3300delA, 3301delT, 3302delA, 3303delG, 3304delG, 3305delT, 3306delT,
|
3307delC, 3308delC, 3309delA, 3310delG, 3311delT, 3312delG, 3313delA, 3314delT,
|
3315delG, 3316delA, 3317delA, 3318delA, 3319delA, 3320delC, 3321delA, 3322delT,
|
3323delT, 3324delC, 3325delA, 3326delA, 3327delG, 3328delC, 3329delA, 3330delG,
|
3331delA, 3332delA, 3333delC, 3334delT, 3335delA, 3336delG, 3337delG, 3338delT,
|
3339delA, 3340delG, 3341delA, 3342delA, 3343delA, 3344delC, 3345delA, 3346delG,
|
3347delA, 3348delG, 3349delG, 3350delG, 3351delC, 3352delC, 3353delA, 3354delA,
|
3355delA, 3356delA, 3357delT, 3358delT, 3359delG, 3360delA, 3361delA, 3362delT,
|
3363delG, 3364delC, 3365delT, 3366delA, 3367delT, 3368delG, 3369delC, 3370delT,
|
3371delT, 3372delA, 3373delG, 3374delA, 3375delT, 3376delT, 3377delA, 3378delG,
|
3379delG, 3380delG, 3381delG, 3382delT, 3383delT, 3384delT, 3385delT, 3386delG,
|
3387delC, 3388delA, 3389delA, 3390delC, 3391delC, 3392delT, 3393delG, 3394delA,
|
3395delG, 3396delG, 3397delT, 3398delC, 3399delT, 3400delA, 3401delT, 3402delA,
|
3403delA, 3404delA, 3405delC, 3406delA, 3407delA, 3408delA, 3409delG, 3410delT,
|
3411delC, 3412delT, 3413delT, 3414delC, 3415delC, 3416delT, 3417delG, 3418delG,
|
3419delA, 3420delA, 3421delG, 3422delT, 3423delA, 3424delA, 3425delT, 3426delT,
|
3427delG, 3428delT, 3429delA, 3430delA, 3431delG, 3432delC, 3433delA, 3434delT,
|
3435delC, 3436delC, 3437delT, 3438delG, 3439delA, 3440delA, 3441delA, 3442delT,
|
3443delA, 3444delA, 3445delA, 3446delA, 3447delA, 3448delA, 3449delG, 3450delC,
|
3451delA, 3452delA, 3453delG, 3454delA, 3455delA, 3456delT, 3457delA, 3458delT,
|
3459delG, 3460delA, 3461delA, 3462delG, 3463delA, 3464delA, 3465delG, 3466delT,
|
3467delA, 3468delG, 3469delT, 3470delT, 3471delC, 3472delA, 3473delG, 3474delA,
|
3475delC, 3476delT, 3477delG, 3478delT, 3479delT, 3480delA, 3481delA, 3482delT,
|
3483delA, 3484delC, 3485delA, 3486delG, 3487delA, 3488delT, 3489delT, 3490delT,
|
3491delC, 3492delT, 3493delC, 3494delT, 3495delC, 3496delC, 3497delA, 3498delT,
|
3499delA, 3500delT, 3501delC, 3502delT, 3503delG, 3504delA, 3505delT, 3506delT,
|
3507delT, 3508delC, 3509delA, 3510delG, 3511delA, 3512delT, 3513delA, 3514delA,
|
3515delC, 3516delT, 3517delT, 3518delA, 3519delG, 3520delA, 3521delA, 3522delC,
|
3523delA, 3524delG, 3525delC, 3526delC, 3527delT, 3528delA, 3529delT, 3530delG,
|
3531delG, 3532delG, 3533delA, 3534delA, 3535delG, 3536delT, 3537delA, 3538delG,
|
3539delT, 3540delC, 3541delA, 3542delT, 3543delG, 3544delC, 3545delA, 3546delT,
|
3547delC, 3548delT, 3549delC, 3550delA, 3551delG, 3552delG, 3553delT, 3554delT,
|
3555delT, 3556delG, 3557delT, 3558delT, 3559delC, 3560delT, 3561delG, 3562delA,
|
3563delG, 3564delA, 3565delC, 3566delA, 3567delC, 3568delC, 3569delT, 3570delG,
|
3571delA, 3572delT, 3573delG, 3574delA, 3575delC, 3576delC, 3577delT, 3578delG,
|
3579delT, 3580delT, 3581delA, 3582delG, 3583delA, 3584delT, 3585delG, 3586delA,
|
3587delT, 3588delG, 3589delG, 3590delT, 3591delG, 3592delA, 3593delA, 3594delA,
|
3595delT, 3596delA, 3597delA, 3598delA, 3599delG, 3600delG, 3601delA, 3602delA,
|
3603delG, 3604delA, 3605delT, 3606delA, 3607delC, 3608delT, 3609delA, 3610delG,
|
3611delT, 3612delT, 3613delT, 3614delT, 3615delG, 3616delC, 3617delT, 3618delG,
|
3619delA, 3620delA, 3621delA, 3622delA, 3623delT, 3624delG, 3625delA, 3626delC,
|
3627delA, 3628delT, 3629delT, 3630delA, 3631delA, 3632delG, 3633delG, 3634delA,
|
3635delA, 3636delA, 3637delG, 3638delT, 3639delT, 3640delC, 3641delT, 3642delG,
|
3643delC, 3644delT, 3645delG, 3646delT, 3647delT, 3648delT, 3649delT, 3650delT, 3651delA,
|
3652delG, 3653delC, 3654delA, 3655delA, 3656delA, 3657delA, 3658delG, 3659delC,
|
3660delG, 3661delT, 3662delC, 3663delC, 3664delA, 3665delG, 3666delA, 3667delG,
|
3668delA, 3669delG, 3670delG, 3671delA, 3672delG, 3673delA, 3674delG, 3675delC
|
3676delT, 3677delT, 3678delA, 3679delG, 3680delC, 3681delA, 3682delG, 3683delG,
|
3684delA, 3685delG, 3686delT, 3687delC, 3688delC, 3689delT, 3690delA, 3691delG,
|
3692delC, 3693delC, 3694delC, 3695delT, 3696delT, 3697delT, 3698delC, 3699delA,
|
3700delC, 3701delC, 3702delC, 3703delA, 3704delT, 3705delA, 3706delC, 3707delA,
|
3708delC, 3709delA, 3710delT, 3711delT, 3712delT, 3713delG, 3714delG, 3715delC,
|
3716delT, 3717delC, 3718delA, 3719delG, 3720delG, 3721delG, 3722delT, 3723delT,
|
3724delA, 3725delC, 3726delC, 3727delG, 3728delA, 3729delA, 3730delG, 3731delA,
|
3732delG, 3733delG, 3734delG, 3735delG, 3736delC, 3737delC, 3738delA, 3739delA,
|
3740delG, 3741delA, 3742delA, 3743delA, 3744delT, 3745delT, 3746delA, 3747delG,
|
3748delA, 3749delG, 3750delT, 3751delC, 3752delC, 3753delT, 3754delC, 3755delA,
|
3756delG, 3757delA, 3758delA, 3759delG, 3760delA, 3761delG, 3762delA, 3763delA,
|
3764delC, 3765delT, 3766delT, 3767delA, 3768delT, 3769delC, 3770delT, 3771delA,
|
3772delG, 3773delT, 3774delG, 3775delA, 3776delG, 3777delG, 3778delA, 3779delT,
|
3780delG, 3781delA, 3782delA, 3783delG, 3784delA, 3785delG, 3786delC, 3787delT,
|
3788delT, 3789delC, 3790delC, 3791delC, 3792delT, 3793delG, 3794delC, 3795delT,
|
3796delT, 3797delC, 3798delC, 3799delA, 3800delA, 3801delC, 3802delA, 3803delC,
|
3804delT, 3805delT, 3806delG, 3807delT, 3808delT, 3809delA, 3810delT, 3811delT, 3812delT,
|
3813delG, 3814delG, 3815delT, 3816delA, 3817delA, 3818delA, 3819delG, 3820delT,
|
3821delA, 3822delA, 3823delA, 3824delC, 3825delA, 3826delA, 3827delT, 3828delA,
|
3829delT, 3830delA, 3831delC, 3832delC, 3833delT, 3834delT, 3835delC, 3836delT,
|
3837delC, 3838delA, 3839delG, 3840delT, 3841delC, 3842delT, 3843delA, 3844delC,
|
3845delT, 3846delA, 3847delG, 3848delG, 3849delC, 3850delA, 3851delT, 3852delA,
|
3853delG, 3854delC, 3855delA, 3856delC, 3857delC, 3858delG, 3859delT, 3860delT,
|
3861delG, 3862delC, 3863delT, 3864delA, 3865delC, 3866delC, 3867delG, 3868delA,
|
3869delG, 3870delT, 3871delG, 3872delT, 3873delC, 3874delT, 3875delG, 3876delT,
|
3877delC, 3878delT, 3879delA, 3880delA, 3881delG, 3882delA, 3883delA, 3884delC,
|
3885delA, 3886delC, 3887delA, 3888delG, 3889delA, 3890delG, 3891delG, 3892delA,
|
3893delG, 3894delA, 3895delA, 3896delT, 3897delT, 3898delT, 3899delA, 3900delT,
|
3901delT, 3902delA, 3903delT, 3904delC, 3905delA, 3906delT, 3907delT, 3908delG,
|
3909delA, 3910delA, 3911delG, 3912delA, 3913delA, 3914delT, 3915delA, 3916delG,
|
3917delC, 3918delT, 3919delT, 3920delA, 3921delA, 3922delA, 3923delT, 3924delG,
|
3925delA, 3926delC, 3927delT, 3928delG, 3929delC, 3930delA, 3931delG, 3932delT,
|
3933delA, 3934delA, 3935delC, 3936delC, 3937delA, 3938delG, 3939delG, 3940delT,
|
3941delA, 3942delA, 3943delT, 3944delA, 3945delT, 3946delT, 3947delG, 3948delG,
|
3949delC, 3950delA, 3951delA, 3952delA, 3953delG, 3954delG, 3955delC, 3956delA,
|
3957delT, 3958delC, 3959delT, 3960delC, 3961delA, 3962delG, 3963delG, 3964delA,
|
3965delA, 3966delC, 3967delA, 3968delT, 3969delC, 3970delA, 3971delC, 3972delC,
|
3973delT, 3974delT, 3975delA, 3976delG, 3977delT, 3978delG, 3979delA, 3980delG,
|
3981delG, 3982delA, 3983delA, 3984delA, 3985delC, 3986delA, 3987delA, 3988delA,
|
3989delA, 3990delT, 3991delG, 3992delT, 3993delT, 3994delC, 3995delT, 3996delG,
|
3997delC, 3998delT, 3999delA, 4000delG, 4001delC, 4002delT, 4003delT, 4004delG,
|
4005delT, 4006delT, 4007delT, 4008delT, 4009delC, 4010delT, 4011delT, 4012delC, 4013delA,
|
4014delC, 4015delA, 4016delG, 4017delT, 4018delG, 4019delC, 4020delA, 4021delG,
|
4022delT, 4023delG, 4024delA, 4025delA, 4026delT, 4027delT, 4028delG, 4029delG,
|
4030delA, 4031delA, 4032delG, 4033delA, 4034delC, 4035delT, 4036delT, 4037delG,
|
4038delA, 4039delC, 4040delT, 4041delG, 4042delC, 4043delA, 4044delA, 4045delA,
|
4046delT, 4047delA, 4048delC, 4049delA, 4050delA, 4051delA, 4052delC, 4053delA,
|
4054delC, 4055delC, 4056delC, 4057delA, 4058delG, 4059delG, 4060delA, 4061delT,
|
4062delC, 4063delC, 4064delT, 4065delT, 4066delT, 4067delC, 4068delT, 4069delT,
|
4070delG, 4071delA, 4072delT, 4073delT, 4074delG, 4075delG, 4076delT, 4077delT,
|
4078delC, 4079delT, 4080delT, 4081delC, 4082delC, 4083delA, 4084delA, 4085delA,
|
4086delC, 4087delA, 4088delA, 4089delA, 4090delT, 4091delG, 4092delA, 4093delG,
|
4094delG, 4095delC, 4096delA, 4097delT, 4098delC, 4099delA, 4100delG, 4101delT,
|
4102delC, 4103delT, 4104delG, 4105delA, 4106delA, 4107delA, 4108delG, 4109delC,
|
4110delC, 4111delA, 4112delG, 4113delG, 4114delG, 4115delA, 4116delG, 4117delT,
|
4118delT, 4119delG, 4120delG, 4121delT, 4122delC, 4123delT, 4124delG, 4125delA,
|
4126delG, 4127delT, 4128delG, 4129delA, 4130delC, 4131delA, 4132delA, 4133delG,
|
4134delG, 4135delA, 4136delA, 4137delT, 4138delT, 4139delG, 4140delG, 4141delT,
|
4142delT, 4143delT, 4144delC, 4145delA, 4146delG, 4147delA, 4148delT, 4149delG,
|
4150delA, 4151delT, 4152delG, 4153delA, 4154delA, 4155delG, 4156delA, 4157delA,
|
4158delA, 4159delG, 4160delA, 4161delG, 4162delG, 4163delA, 4164delA, 4165delC,
|
4166delG, 4167delG, 4168delG, 4169delC, 4170delT, 4171delT, 4172delG, 4173delG,
|
4174delA, 4175delA, 4176delG, 4177delA, 4178delA, 4179delA, 4180delA, 4181delT,
|
4182delA, 4183delA, 4184delT, 4185delC, 4186delA, 4187delA, 4188delG, 4189delA,
|
4190delA, 4191delG, 4192delA, 4193delG, 4194delC, 4195delA, 4196delA, 4197delA,
|
4198delG, 4199delC, 4200delA, 4201delT, 4202delG, 4203delG, 4204delA, 4205delT,
|
4206delT, 4207delC, 4208delA, 4209delA, 4210delA, 4211delC, 4212delT, 4213delT,
|
4214delA, 4215delG, 4216delG, 4217delT, 4218delG, 4219delA, 4220delA, 4221delG,
|
4222delC, 4223delA, 4224delG, 4225delC, 4226delA, 4227delT, 4228delC, 4229delT,
|
4230delG, 4231delG, 4232delG, 4233delT, 4234delG, 4235delT, 4236delG, 4237delA,
|
4238delG, 4239delA, 4240delG, 4241delT, 4242delG, 4243delA, 4244delA, 4245delA,
|
4246delC, 4247delA, 4248delA, 4249delG, 4250delC, 4251delG, 4252delT, 4253delC,
|
4254delT, 4255delC, 4256delT, 4257delG, 4258delA, 4259delA, 4260delG, 4261delA,
|
4262delC, 4263delT, 4264delG, 4265delC, 4266delT, 4267delC, 4268delA, 4269delG,
|
4270delG, 4271delG, 4272delC, 4273delT, 4274delA, 4275delT, 4276delC, 4277delC,
|
4278delT, 4279delC, 4280delT, 4281delC, 4282delA, 4283delG, 4284delA, 4285delG,
|
4286delT, 4287delG, 4288delA, 4289delC, 4290delA, 4291delT, 4292delT, 4293delT,
|
4294delT, 4295delA, 4296delA, 4297delC, 4298delC, 4299delA, 4300delC, 4301delT,
|
4302delC, 4303delA, 4304delG, 4305delC, 4306delA, 4307delG, 4308delA, 4309delG,
|
4310delG, 4311delG, 4312delA, 4313delT, 4314delA, 4315delC, 4316delC, 4317delA,
|
4318delT, 4319delG, 4320delC, 4321delA, 4322delA, 4323delC, 4324delA, 4325delT,
|
4326delA, 4327delA, 4328delC, 4329delC, 4330delT, 4331delG, 4332delA, 4333delT,
|
4334delA, 4335delA, 4336delA, 4337delG, 4338delC, 4339delT, 4340delC, 4341delC,
|
4342delA, 4343delG, 4344delC, 4345delA, 4346delG, 4347delG, 4348delA, 4349delA,
|
4350delA, 4351delT, 4352delG, 4353delG, 4354delC, 4355delT, 4356delG, 4357delA,
|
4358delA, 4359delC, 4360delT, 4361delA, 4362delG, 4363delA, 4364delA, 4365delG,
|
4366delC, 4367delT, 4368delG, 4369delT, 4370delG, 4371delT, 4372delT, 4373delA,
|
4374delG, 4375delA, 4376delA, 4377delC, 4378delA, 4379delG, 4380delC, 4381delA,
|
4382delT, 4383delG, 4384delG, 4385delG, 4386delA, 4387delG, 4388delC, 4389delC,
|
4390delA, 4391delG, 4392delC, 4393delC, 4394delT, 4395delT, 4396delC, 4397delT,
|
4398delA, 4399delA, 4400delC, 4401delA, 4402delG, 4403delC, 4404delT, 4405delA,
|
4406delC, 4407delC, 4408delC, 4409delT, 4410delT, 4411delC, 4412delC, 4413delA,
|
4414delT, 4415delC, 4416delA, 4417delT, 4418delA, 4419delA, 4420delG, 4421delT,
|
4422delG, 4423delA, 4424delC, 4425delT, 4426delC, 4427delC, 4428delT, 4429delC,
|
4430delT, 4431delG, 4432delC, 4433delC, 4434delC, 4435delT, 4436delT, 4437delG,
|
4438delA, 4439delG, 4440delG, 4441delA, 4442delC, 4443delC, 4444delT, 4445delG,
|
4446delC, 4447delG, 4448delA, 4449delA, 4450delA, 4451delT, 4452delC, 4453delC,
|
4454delA, 4455delG, 4456delA, 4457delA, 4458delC, 4459delA, 4460delA, 4461delA,
|
4462delG, 4463delC, 4464delA, 4465delC, 4466delA, 4467delT, 4468delC, 4469delA,
|
4470delG, 4471delA, 4472delA, 4473delA, 4474delA, 4475delA, 4476delG, 4477delC,
|
4478delA, 4479delG, 4480delT, 4481delA, 4482delT, 4483delT, 4484delA, 4485delA,
|
4486delC, 4487delT, 4488delT, 4489delC, 4490delA, 4491delC, 4492delA, 4493delG,
|
4494delA, 4495delA, 4496delA, 4497delA, 4498delG, 4499delT, 4500delA, 4501delG,
|
4502delT, 4503delG, 4504delA, 4505delA, 4506delT, 4507delA, 4508delC, 4509delC,
|
4510delC, 4511delT, 4512delA, 4513delT, 4514delA, 4515delA, 4516delG, 4517delC,
|
4518delC, 4519delA, 4520delG, 4521delA, 4522delA, 4523delT, 4524delC, 4525delC,
|
4526delA, 4527delG, 4528delA, 4529delA, 4530delG, 4531delG, 4532delC, 4533delC,
|
4534delT, 4535delT, 4536delT, 4537delC, 4538delT, 4539delG, 4540delC, 4541delT,
|
4542delG, 4543delA, 4544delC, 4545delA, 4546delA, 4547delG, 4548delT, 4549delT,
|
4550delT, 4551delG, 4552delA, 4553delG, 4554delG, 4555delT, 4556delG, 4557delT,
|
4558delC, 4559delT, 4560delG, 4561delC, 4562delA, 4563delG, 4564delA, 4565delT,
|
4566delA, 4567delG, 4568delT, 4569delT, 4570delC, 4571delT, 4572delA, 4573delC,
|
4574delC, 4575delA, 4576delG, 4577delT, 4578delA, 4579delA, 4580delA, 4581delA,
|
4582delA, 4583delT, 4584delA, 4585delA, 4586delA, 4587delG, 4588delA, 4589delA,
|
4590delC, 4591delC, 4592delA, 4593delG, 4594delG, 4595delA, 4596delG, 4597delT,
|
4598delG, 4599delG, 4600delA, 4601delA, 4602delA, 4603delG, 4604delG, 4605delT,
|
4606delC, 4607delA, 4608delT, 4609delC, 4610delC, 4611delC, 4612delC, 4613delT,
|
4614delT, 4615delC, 4616delT, 4617delA, 4618delA, 4619delA, 4620delT, 4621delG,
|
4622delC, 4623delC, 4624delC, 4625delA, 4626delT, 4627delC, 4628delA, 4629delT,
|
4630delT, 4631delA, 4632delG, 4633delA, 4634delT, 4635delG, 4636delA, 4637delT,
|
4638delA, 4639delG, 4640delG, 4641delT, 4642delG, 4643delG, 4644delT, 4645delA,
|
4646delC, 4647delA, 4648delT, 4649delG, 4650delC, 4651delA, 4652delC, 4653delA,
|
4654delG, 4655delT, 4656delT, 4657delG, 4658delC, 4659delT, 4660delC, 4661delT,
|
4662delG, 4663delG, 4664delG, 4665delA, 4666delG, 4667delT, 4668delC, 4669delT,
|
4670delT, 4671delC, 4672delA, 4673delG, 4674delA, 4675delA, 4676delT, 4677delA,
|
4678delG, 4679delA, 4680delA, 4681delA, 4682delC, 4683delT, 4684delA, 4685delC,
|
4686delC, 4687delC, 4688delA, 4689delT, 4690delC, 4691delT, 4692delC, 4693delA,
|
4694delA, 4695delG, 4696delA, 4697delG, 4698delG, 4699delA, 4700delG, 4701delC,
|
4702delT, 4703delC, 4704delA, 4705delT, 4706delT, 4707delA, 4708delA, 4709delG,
|
4710delG, 4711delT, 4712delT, 4713delG, 4714delT, 4715delT, 4716delG, 4717delA,
|
4718delT, 4719delG, 4720delT, 4721delG, 4722delG, 4723delA, 4724delG, 4725delG,
|
4726delA, 4727delG, 4728delC, 4729delA, 4730delA, 4731delC, 4732delA, 4733delG,
|
4734delC, 4735delT, 4736delG, 4737delG, 4738delA, 4739delA, 4740delG, 4741delA,
|
4742delG, 4743delT, 4744delC, 4745delT, 4746delG, 4747delG, 4748delG, 4749delC,
|
4750delC, 4751delA, 4752delC, 4753delA, 4754delC, 4755delG, 4756delA, 4757delT,
|
4758delT, 4759delT, 4760delG, 4761delA, 4762delC, 4763delG, 4764delG, 4765delA,
|
4766delA, 4767delA, 4768delC, 4769delA, 4770delT, 4771delC, 4772delT, 4773delT,
|
4774delA, 4775delC, 4776delT, 4777delT, 4778delG, 4779delC, 4780delC, 4781delA,
|
4782delA, 4783delG, 4784delG, 4785delC, 4786delA, 4787delA, 4788delG, 4789delA,
|
4790delT, 4791delC, 4792delT, 4793delA, 4794delG, 4795delA, 4796delG, 4797delG,
|
4798delG, 4799delA, 4800delA, 4801delC, 4802delC, 4803delC, 4804delC, 4805delT,
|
4806delT, 4807delA, 4808delC, 4809delC, 4810delT, 4811delG, 4812delG, 4813delA,
|
4814delA, 4815delT, 4816delC, 4817delT, 4818delG, 4819delG, 4820delA, 4821delA,
|
4822delT, 4823delC, 4824delA, 4825delG, 4826delC, 4827delC, 4828delT, 4829delC,
|
4830delT, 4831delT, 4832delC, 4833delT, 4834delC, 4835delT, 4836delG, 4837delA,
|
4838delT, 4839delG, 4840delA, 4841delC, 4842delC, 4843delC, 4844delT, 4845delG,
|
4846delA, 4847delA, 4848delT, 4849delC, 4850delT, 4851delG, 4852delA, 4853delT,
|
4854delC, 4855delC, 4856delT, 4857delT, 4858delC, 4859delT, 4860delG, 4861delA,
|
4862delA, 4863delG, 4864delA, 4865delC, 4866delA, 4867delG, 4868delA, 4869delG,
|
4870delC, 4871delC, 4872delC, 4873delC, 4874delA, 4875delG, 4876delA, 4877delG,
|
4878delT, 4879delC, 4880delA, 4881delG, 4882delC, 4883delT, 4884delC, 4885delG,
|
4886delT, 4887delG, 4888delT, 4889delT, 4890delG, 4891delG, 4892delC, 4893delA,
|
4894delA, 4895delC, 4896delA, 4897delT, 4898delA, 4899delC, 4900delC, 4901delA,
|
4902delT, 4903delC, 4904delT, 4905delT, 4906delC, 4907delA, 4908delA, 4909delC,
|
4910delC, 4911delT, 4912delC, 4913delT, 4914delG, 4915delC, 4916delA, 4917delT,
|
4918delT, 4919delG, 4920delA, 4921delA, 4922delA, 4923delG, 4924delT, 4925delT,
|
4926delC, 4927delC, 4928delC, 4929delC, 4930delA, 4931delA, 4932delT, 4933delT,
|
4934delG, 4935delA, 4936delA, 4937delA, 4938delG, 4939delT, 4940delT, 4941delG,
|
4942delC, 4943delA, 4944delG, 4945delA, 4946delA, 4947delT, 4948delC, 4949delT,
|
4950delG, 4951delC, 4952delC, 4953delC, 4954delA, 4955delG, 4956delG, 4957delG,
|
4958delT, 4959delC, 4960delC, 4961delA, 4962delG, 4963delC, 4964delT, 4965delG,
|
4966delC, 4967delT, 4968delG, 4969delC, 4970delT, 4971delC, 4972delA, 4973delT,
|
4974delA, 4975delC, 4976delT, 4977delA, 4978delC, 4979delT, 4980delG, 4981delA,
|
4982delT, 4983delA, 4984delC, 4985delT, 4986delG, 4987delC, 4988delT, 4989delG,
|
4990delG, 4991delG, 4992delT, 4993delA, 4994delT, 4995delA, 4996delA, 4997delT,
|
4998delG, 4999delC, 5000delA, 5001delA, 5002delT, 5003delG, 5004delG, 5005delA,
|
5006delA, 5007delG, 5008delA, 5009delA, 5010delA, 5011delG, 5012delT, 5013delG,
|
5014delT, 5015delG, 5016delA, 5017delG, 5018delC, 5019delA, 5020delG, 5021delG,
|
5022delG, 5023delA, 5024delG, 5025delA, 5026delA, 5027delG, 5028delC, 5029delC,
|
5030delA, 5031delG, 5032delA, 5033delA, 5034delT, 5035delT, 5036delG, 5037delA,
|
5038delC, 5039delA, 5040delG, 5041delC, 5042delT, 5043delT, 5044delC, 5045delA,
|
5046delA, 5047delC, 5048delA, 5049delG, 5050delA, 5051delA, 5052delA, 5053delG,
|
5054delG, 5055delG, 5056delT, 5057delC, 5058delA, 5059delA, 5060delC, 5061delA,
|
5062delA, 5063delA, 5064delA, 5065delG, 5066delA, 5067delA, 5068delT, 5069delG,
|
5070delT, 5071delC, 5072delC, 5073delA, 5074delT, 5075delG, 5076delG, 5077delT,
|
5078delG, 5079delG, 5080delT, 5081delG, 5082delT, 5083delC, 5084delT, 5085delG,
|
5086delG, 5087delC, 5088delC, 5089delT, 5090delG, 5091delA, 5092delC, 5093delC,
|
5094delC, 5095delC, 5096delA, 5097delG, 5098delA, 5099delA, 5100delG, 5101delA,
|
5102delA, 5103delT, 5104delT, 5105delT, 5106delA, 5107delT, 5108delG, 5109delC,
|
5110delT, 5111delC, 5112delG, 5113delT, 5114delG, 5115delT, 5116delA, 5117delC,
|
5118delA, 5119delA, 5120delG, 5121delT, 5122delT, 5123delT, 5124delG, 5125delC,
|
5126delC, 5127delA, 5128delG, 5129delA, 5130delA, 5131delA, 5132delA, 5133delC,
|
5134delA, 5135delC, 5136delC, 5137delA, 5138delC, 5139delA, 5140delT, 5141delC,
|
5142delA, 5143delC, 5144delT, 5145delT, 5146delT, 5147delA, 5148delA, 5149delC,
|
5150delT, 5151delA, 5152delA, 5153delT, 5154delC, 5155delT, 5156delA, 5157delA,
|
5158delT, 5159delT, 5160delA, 5161delC, 5162delT, 5163delG, 5164delA, 5165delA,
|
5166delG, 5167delA, 5168delG, 5169delA, 5170delC, 5171delT, 5172delA, 5173delC,
|
5174delT, 5175delC, 5176delA, 5177delT, 5178delG, 5179delT, 5180delT, 5181delG,
|
5182delT, 5183delT, 5184delA, 5185delT, 5186delG, 5187delA, 5188delA, 5189delA,
|
5190delA, 5191delC, 5192delA, 5193delG, 5194delA, 5195delT, 5196delG, 5197delC,
|
5198delT, 5199delG, 5200delA, 5201delG, 5202delT, 5203delT, 5204delT, 5205delG,
|
5206delT, 5207delG, 5208delT, 5209delG, 5210delT, 5211delG, 5212delA, 5213delA,
|
5214delC, 5215delG, 5216delG, 5217delA, 5218delC, 5219delA, 5220delC, 5221delT,
|
5222delG, 5223delA, 5224delA, 5225delA, 5226delT, 5227delA, 5228delT, 5229delT,
|
5230delT, 5231delT, 5232delC, 5233delT, 5234delA, 5235delG, 5236delG, 5237delA,
|
5238delA, 5239delT, 5240delT, 5241delG, 5242delC, 5243delG, 5244delG, 5245delG,
|
5246delA, 5247delG, 5248delG, 5249delA, 5250delA, 5251delA, 5252delA, 5253delT,
|
5254delG, 5255delG, 5256delG, 5257delT, 5258delA, 5259delG, 5260delT, 5261delT,
|
5262delA, 5263delG, 5264delC, 5265delT, 5266delA, 5267delT, 5268delT, 5269delT,
|
5270delC, 5271delT, 5272delG, 5273delG, 5274delG, 5275delT, 5276delG, 5277delA,
|
5278delC, 5279delC, 5280delC, 5281delA, 5282delG, 5283delT, 5284delC, 5285delT,
|
5286delA, 5287delT, 5288delT, 5289delA, 5290delA, 5291delA, 5292delG, 5293delA,
|
5294delA, 5295delA, 5296delG, 5297delA, 5298delA, 5299delA, 5300delA, 5301delA,
|
5302delT, 5303delG, 5304delC, 5305delT, 5306delG, 5307delA, 5308delA, 5309delT,
|
5310delG, 5311delA, 5312delG, 5313delC, 5314delA, 5315delT, 5316delG, 5317delA,
|
5318delT, 5319delT, 5320delT, 5321delT, 5322delG, 5323delA, 5324delA, 5325delG,
|
5326delT, 5327delC, 5328delA, 5329delG, 5330delA, 5331delG, 5332delG, 5333delA,
|
5334delG, 5335delA, 5336delT, 5337delG, 5338delT, 5339delG, 5340delG, 5341delT,
|
5342delC, 5343delA, 5344delA, 5345delT, 5346delG, 5347delG, 5348delA, 5349delA,
|
5350delG, 5351delA, 5352delA, 5353delA, 5354delC, 5355delC, 5356delA, 5357delC,
|
5358delC, 5359delA, 5360delA, 5361delG, 5362delG, 5363delT, 5364delC, 5365delC,
|
5366delA, 5367delA, 5368delA, 5369delG, 5370delC, 5371delG, 5372delA, 5373delG,
|
5374delC, 5375delA, 5376delA, 5377delG, 5378delA, 5379delG, 5380delA, 5381delA,
|
5382delT, 5383delC, 5384delC, 5385delC, 5386delA, 5387delG, 5388delG, 5389delA,
|
5390delC, 5391delA, 5392delG, 5393delA, 5394delA, 5395delA, 5396delG, 5397delA,
|
5398delT, 5399delC, 5400delT, 5401delT, 5402delC, 5403delA, 5404delG, 5405delG,
|
5406delG, 5407delG, 5408delG, 5409delC, 5410delT, 5411delA, 5412delG, 5413delA,
|
5414delA, 5415delA, 5416delT, 5417delC, 5418delT, 5419delG, 5420delT, 5421delT,
|
5422delG, 5423delC, 5424delT, 5425delA, 5426delT, 5427delG, 5428delG, 5429delG,
|
5430delC, 5431delC, 5432delC, 5433delT, 5434delT, 5435delC, 5436delA, 5437delC,
|
5438delC, 5439delA, 5440delA, 5441delC, 5442delA, 5443delT, 5444delG, 5445delC,
|
5446delC, 5447delC, 5448delA, 5449delC, 5450delA, 5451delG, 5452delA, 5453delT,
|
5454delC, 5455delA, 5456delA, 5457delC, 5458delT, 5459delG, 5460delG, 5461delA,
|
5462delA, 5463delT, 5464delG, 5465delG, 5466delA, 5467delT, 5468delG, 5469delG,
|
5470delT, 5471delA, 5472delC, 5473delA, 5474delG, 5475delC, 5476delT, 5477delG,
|
5478delT, 5479delG, 5480delT, 5481delG, 5482delG, 5483delT, 5484delG, 5485delC,
|
5486delT, 5487delT, 5488delC, 5489delT, 5490delG, 5491delT, 5492delG, 5493delG,
|
5494delT, 5495delG, 5496delA, 5497delA, 5498delG, 5499delG, 5500delA, 5501delG,
|
5502delC, 5503delT, 5504delT, 5505delT, 5506delC, 5507delA, 5508delT, 5509delC,
|
5510delA, 5511delT, 5512delT, 5513delC, 5514delA, 5515delC, 5516delC, 5517delC,
|
5518delT, 5519delT, 5520delG, 5521delG, 5522delC, 5523delA, 5524delC, 5525delA,
|
5526delG, 5527delG, 5528delT, 5529delG, 5530delT, 5531delC, 5532delC, 5533delA,
|
5534delC, 5535delC, 5536delC, 5537delA, 5538delA, 5539delT, 5540delT, 5541delG,
|
5542delT, 5543delG, 5544delG, 5545delT, 5546delT, 5547delG, 5548delT, 5549delG,
|
5550delC, 5551delA, 5552delG, 5553delC, 5554delC, 5555delA, 5556delG, 5557delA,
|
5558delT, 5559delG, 5560delC, 5561delC, 5562delT, 5563delG, 5564delG, 5565delA,
|
5566delC, 5567delA, 5568delG, 5569delA, 5570delG, 5571delG, 5572delA, 5573delC,
|
5574delA, 5575delA, 5576delT, 5577delG, 5578delG, 5579delC, 5580delT, 5581delT,
|
5582delC, 5583delC, 5584delA, 5585delT, 5586delG, 5587delC, 5588delA, 5589delA,
|
5590delT, 5591delT, 5592delG, 5593delG, 5594delG, 5595delC, 5596delA, 5597delG,
|
5598delA, 5599delT, 5600delG, 5601delT, 5602delG, 5603delT, 5604delG, 5605delA,
|
5606delG, 5607delG, 5608delC, 5609delA, 5610delC, 5611delC, 5612delT, 5613delG,
|
5614delT, 5615delG, 5616delG, 5617delT, 5618delG, 5619delA, 5620delC, 5621delC,
|
5622delC, 5623delG, 5624delA, 5625delG, 5626delA, 5627delG, 5628delT, 5629delG,
|
5630delG, 5631delG, 5632delT, 5633delG, 5634delT, 5635delT, 5636delG, 5637delG,
|
5638delA, 5639delC, 5640delA, 5641delG, 5642delT, 5643delG, 5644delT, 5645delA,
|
5646delG, 5647delC, 5648delA, 5649delC, 5650delT, 5651delC, 5652delT, 5653delA,
|
5654delC, 5655delC, 5656delA, 5657delG, 5658delT, 5659delG, 5660delC, 5661delC,
|
5662delA, 5663delG, 5664delG, 5665delA, 5666delG, 5667delC, 5668delT, 5669delG,
|
5670delG, 5671delA, 5672delC, 5673delA, 5674delC, 5675delC, 5676delT, 5677delA,
|
5678delC, 5679delC.
|
|
[0228]
20
TABLE 10
|
|
|
List of Two Base Deletions
|
|
|
4delGA, 5delAT, 6delTT, 7delTT, 8delTA, 9delAT, 10delTC, 11delCT, 12delTG, 132delGC,
|
133delCT, 134delTC, 135delCT, 136delTT, 137delTC, 138delCG, 139delGC, 140delCG,
|
141delGT, 142delTT, 143delTG, 144delGA, 145delAA, 146delAG, 147delGA, 148delAA,
|
149delAG, 150delGT, 151delTA, 152delAC, 153delCA, 154delAA, 155delAA, 156delAA,
|
157delAT, 158delTG, 159delGT, 160delTC, 161delCA, 162delAT, 163delTT, 164delTA,
|
165delAA, 166delAT, 167delTG, 168delGC, 169delCT, 170delTA, 171delAT, 172delTG,
|
173delGC, 174delCA, 175delAG, 176delGA, 177delAA, 178delAA, 179delAA, 180delAT,
|
181delTC, 182delCT, 183delTT, 184delTA, 185delAG, 186delGA, 187delAG, 188delGT,
|
189delTG, 190delGT, 191delTC, 192delCC, 193delCC, 194delCA, 195delAT, 196delTC,
|
197delCT, 198delTG, 199delGT, 200delTC, 201delCT, 202delTG, 203delGG, 204delGA,
|
205delAG, 206delGT, 207delTT, 208delTG, 209delGA, 210delAT, 211delTC, 212delCA,
|
213delAA, 214delAG, 215delGG, 216delGA, 217delAA, 218delAC, 219delCC, 220delCT,
|
221delTG, 222delGT, 223delTC, 224delCT, 225delTC, 226delCC, 227delCA, 228delAC,
|
229delCA, 230delAA, 231delAA, 232delAG, 233delGT, 234delTG, 235delGT, 236delTG,
|
237delGA, 238delAC, 239delCC, 240delCA, 241delAC, 242delCA, 243delAT, 244delTA,
|
245delAT, 246delTT, 247delTT, 248delTT, 249delTG, 250delGC, 251delCA, 252delAA,
|
253delAA, 254delAT, 255delTT, 256delTT, 257delTT, 258delTG, 259delGC, 260delCA,
|
261delAT, 262delTG, 263delGC, 264delCT, 265delTG, 266delGA, 267delAA, 268delAA,
|
269delAC, 270delCT, 271delTT, 272delTC, 273delCT, 274delTC, 275delCA, 276delAA,
|
277delAC, 278delCC, 279delCA, 280delAG, 281delGA, 282delAA, 283delAG, 284delGA,
|
285delAA, 286delAA, 287delAG, 288delGG, 289delGG, 290delGC, 291delCC, 292delCT,
|
293delTT, 294delTC, 295delCA, 296delAC, 297delCA, 298delAG, 299delGT, 300delTG,
|
301delGT, 302delTC, 303delCC, 304delCT, 305delTT, 306delTT, 307delTA, 308delAT,
|
309delTG, 310delGT, 311delTA, 312delAA, 313delAG, 314delGA, 315delAA, 316delAT,
|
317delTG, 318delGA, 319delAT, 320delTA, 321delAT, 322delTA, 323delAA, 324delAC,
|
325delCC, 326delCA, 327delAA, 328delAA, 329delAA, 330delAG, 331delGG, 332delGA,
|
333delAG, 334delGC, 335delCC, 336delCT, 337delTA, 338delAC, 339delCA, 340delAA,
|
341delAG, 342delGA, 343delAA, 344delAA, 345delAG, 346delGT, 347delTA, 348delAC,
|
349delCG, 350delGA, 351delAG, 352delGA, 353delAT, 354delTT, 355delTT, 356delTA,
|
357delAG, 358delGT, 359delTC, 360delCA, 361delAA, 362delAC, 363delCT, 364delTT,
|
365delTG, 366delGT, 367delTT, 368delTG, 369delGA, 370delAA, 371delAG, 372delGA,
|
373delAG, 374delGC, 375delCT, 376delTA, 377delAT, 378delTT, 379delTG, 380delGA,
|
381delAA, 382delAA, 383delAA, 384delAT, 385delTC, 386delCA, 387delAT, 388delTT,
|
389delTT, 390delTG, 391delGT, 392delTG, 393delGC, 394delCT, 395delTT, 396delTT,
|
397delTT, 398delTC, 399delCA, 400delAG, 401delGC, 402delCT, 403delTT, 404delTG,
|
405delGA, 406delAC, 407delCA, 408delAC, 409delCA, 410delAG, 411delGG, 412delGT,
|
413delTT, 414delTT, 415delTG, 416delGG, 417delGA, 418delAG, 419delGT, 420delTA,
|
421delAT, 422delTG, 423delGC, 424delCA, 425delAA, 426delAA, 427delAC, 428delCA,
|
429delAG, 430delGC, 431delCT, 432delTA, 433delAT, 434delTA, 435delAA, 436delAT,
|
437delTT, 438delTT, 439delTT, 440delTG, 441delGC, 442delCA, 443delAA, 444delAA,
|
445delAA, 446delAA, 447delAA, 448delAG, 449delGG, 450delGA, 451delAA, 452delAA,
|
453delAA, 454delAT, 455delTA, 456delAA, 457delAC, 458delCT, 459delTC, 460delCT,
|
461delTC, 462delCC, 463delCT, 464delTG, 465delGA, 466delAA, 467delAC, 468delCA,
|
469delAT, 470delTC, 471delCT, 472delTA, 473delAA, 474delAA, 475delAA, 476delAG,
|
477delGA, 478delAT, 479delTG, 480delGA, 481delAA, 482delAG, 483delGT, 484delTT,
|
485delTT, 486delTC, 487delCT, 488delTA, 489delAT, 490delTC, 491delCA, 492delAT,
|
493delTC, 494delCC, 495delCA, 496delAA, 497delAA, 498delAG, 499delGT, 500delTA,
|
501delAT, 502delTG, 503delGG, 504delGG, 505delGC, 506delCT, 507delTA, 508delAC,
|
509delCA, 510delAG, 511delGA, 512delAA, 513delAA, 514delAC, 515delCC, 516delCG,
|
517delGT, 518delTG, 519delGC, 520delCC, 521delCA, 522delAA, 523delAA, 524delAA,
|
525delAG, 526delGA, 527delAC, 528delCT, 529delTT, 530delTC, 531delCT, 532delTA,
|
533delAC, 534delCA, 535delAG, 536delGA, 537delAG, 538delGT, 539delTG, 540delGA,
|
541delAA, 542delAC, 543delCC, 544delCC, 545delCG, 546delGA, 547delAA, 548delAA,
|
549delAA, 550delAT, 551delTC, 552delCC, 553delCT, 554delTT, 555delTC, 556delCC,
|
557delCT, 558delTT, 559delTG, 560delGC, 561delCA, 562delAG, 563delGG, 564delGA,
|
565delAA, 566delAA, 567delAC, 568delCC, 569delCA, 570delAG, 571delGT, 572delTC,
|
573delCT, 574delTC, 575delCA, 576delAG, 577delGT, 578delTG, 579delGT, 580delTC,
|
581delCC, 582delCA, 583delAA, 584delAC, 585delCT, 586delTC, 587delCT, 588delTC,
|
589delCT, 590delTA, 591delAA, 592delAC, 593delCC, 594delCT, 595delTT, 596delTG,
|
597delGG, 598delGA, 599delAA, 600delAC, 601delCT, 602delTG, 603delGT, 604delTG,
|
605delGA, 606delAG, 607delGA, 608delAA, 609delAC, 610delCT, 611delTC, 612delCT,
|
613delTG, 614delGA, 615delAG, 616delGG, 617delGA, 618delAC, 619delCA, 620delAA,
|
621delAA, 622delAG, 623delGC, 624delCA, 625delAG, 626delGC, 627delCG, 628delGG,
|
629delGA, 630delAT, 631delTA, 632delAC, 633delCA, 634delAA, 635delAC, 636delCC,
|
637delCT, 638delTC, 639delCA, 640delAA, 641delAA, 642delAA, 643delAG, 644delGA,
|
645delAC, 646delCG, 647delGT, 648delTC, 649delCT, 650delTG, 651delGT, 652delTC,
|
653delCT, 654delTA, 655delAC, 656delCA, 657delAT, 658delTT, 659delTG, 660delGA,
|
661delAA, 662delAT, 663delTT, 664delTG, 665delGG, 666delGG, 667delGA, 668delAT,
|
669delTC, 670delCT, 671delTG, 672delGA, 673delAT, 674delTT, 675delTC, 676delCT,
|
677delTT, 678delTC, 679delCT, 680delTG, 681delGA, 682delAA, 683delAG, 684delGA,
|
685delAT, 686delTA, 687delAC, 688delCC, 689delCG, 690delGT, 691delTT, 692delTA,
|
693delAA, 694delAT, 695delTA, 696delAA, 697delAG, 698delGG, 699delGC, 700delCA,
|
701delAA, 702delAC, 703delCT, 704delTT, 705delTA, 706delAT, 707delTT, 708delTG,
|
709delGC, 710delCA, 711delAG, 712delGT, 713delTG, 714delGT, 715delTG, 716delGG,
|
717delGG, 718delGA, 719delAG, 720delGA, 721delAT, 722delTC, 723delCA, 724delAA,
|
725delAG, 726delGA, 727delAA, 728delAT, 729delTT, 730delTG, 731delGT, 732delTT,
|
733delTA, 734delAC, 735delCA, 736delAA, 737delAA, 738delAT, 739delTC, 740delCA,
|
741delAC, 742delCC, 743delCC, 744delCC, 745delCT, 746delTC, 747delCA, 748delAA,
|
749delAG, 750delGG, 751delGA, 752delAA, 753delAC, 754delCC, 755delCA, 756delAG,
|
757delGG, 758delGG, 759delGA, 760delAT, 761delTG, 762delGA, 763delAA, 764delAA,
|
765delAT, 766delTC, 767delCA, 768delAG, 769delGT, 770delTT, 771delTT, 772delTG,
|
773delGG, 774delGA, 775delAT, 776delTT, 777delTC, 778delCT, 779delTG, 780delGC,
|
781delCA, 782delAA, 783delAA, 784delAA, 785delAA, 786delAA, 787delAG, 788delGG,
|
789delGC, 790delCT, 791delTG, 792delGC, 793delCT, 794delTT, 795delTG, 796delGT,
|
797delTG, 798delGA, 799delAA, 800delAT, 801delTT, 802delTT, 803delTT, 804delTC,
|
805delCT, 806delTG, 807delGA, 808delAG, 809delGA, 810delAC, 811delCG, 812delGG,
|
813delGA, 814delAT, 815delTG, 816delGT, 817delTA, 818delAA, 819delAC, 820delCA,
|
821delAA, 822delAA, 823delAT, 824delTA, 825delAC, 826delCT, 827delTG, 828delGA,
|
829delAA, 830delAC, 831delCA, 832delAT, 833delTC, 834delCA, 835delAT, 836delTC,
|
837delCA, 838delAA, 839delAC, 840delCC, 841delCC, 842delCA, 843delAG, 844delGT,
|
845delTA, 846delAA, 847delAT, 848delTA, 849delAA, 850delAT, 851delTG, 852delGA,
|
853delAT, 854delTT, 855delTT, 856delTG, 857delGA, 858delAA, 859delAC, 860delCA,
|
861delAC, 862delCC, 863delCA, 864delAC, 865delCT, 866delTG, 867delGA, 868delAG,
|
869delGA, 870delAA, 871delAG, 872delGC, 873delCG, 874delGT, 875delTG, 876delGC,
|
877delCA, 878delAG, 879delGC, 880delCT, 881delTG, 882delGA, 883delAG, 884delGA,
|
885delAG, 886delGG, 887delGC, 888delCA, 889delAT, 890delTC, 891delCC, 892delCA,
|
893delAG, 894delGA, 895delAA, 896delAA, 897delAA, 898delAG, 899delGT, 900delTA,
|
901delAT, 902delTC, 903delCA, 904delAG, 905delGG, 906delGG, 907delGT, 908delTA,
|
909delAG, 910delGT, 911delTT, 912delTC, 913delCT, 914delTG, 915delGT, 916delTT,
|
917delTT, 918delTC, 919delCA, 920delAA, 921delAA, 922delAC, 923delCT, 924delTT,
|
925delTG, 926delGC, 927delCA, 928delAT, 929delTG, 930delGT, 931delTG, 932delGG,
|
933delGA, 934delAG, 935delGC, 936delCC, 937delCA, 938delAT, 939delTG, 940delGT,
|
941delTG, 942delGG, 943delGC, 944delCA, 945delAC, 946delCA, 947delAA, 948delAA,
|
949delAT, 950delTA, 951delAC, 952delCT, 953delTC, 954delCA, 955delAT, 956delTG,
|
957delGC, 958delCC, 959delCA, 960delAG, 961delGC, 962delCT, 963delTC, 964delCA,
|
965delAT, 966delTT, 967delTA, 968delAC, 969delCA, 970delAG, 971delGC, 972delCA,
|
973delAT, 974delTG, 975delGA, 976delAG, 977delGA, 978delAA, 979delAC, 980delCA,
|
981delAG, 982delGC, 983delCA, 984delAG, 985delGT, 986delTT, 987delTT, 988delTA,
|
989delAT, 990delTT, 991delTA, 992delAC, 993delCT, 994delTC, 995delCA, 996delAC,
|
997delCT, 998delTA, 999delAA, 1000delAA, 1001delAG, 1002delGA, 1003delAC,
|
1004delCA, 1005delAG, 1006delGA, 1007delAA, 1008delAT, 1009delTG, 1010delGA,
|
1011delAA, 1012delAT, 1013delTG, 1014delGT, 1015delTA, 1016delAG, 1017delGA,
|
1018delAA, 1019delAA, 1020delAA, 1021delAG, 1022delGG, 1023delGC, 1024delCT,
|
1025delTG, 1026delGA, 1027delAA, 1028delAT, 1029delTT, 1030delTC, 1031delCT,
|
1032delTG, 1033delGT, 1034delTA, 1035delAA, 1036delAT, 1037delTA, 1038delAA,
|
1039delAA, 1040delAA, 1041delAG, 1042delGC, 1043delCA, 1044delAA, 1045delAA,
|
1046delAC, 1047delCA, 1048delAG, 1049delGC, 1050delCC, 1051delCT, 1052delTG,
|
1053delGG, 1054delGC, 1055delCT, 1056delTT, 1057delTA, 1058delAG, 1059delGC,
|
1060delCA, 1061delAA, 1062delAG, 1063delGG, 1064delGA, 1065delAG, 1066delGC,
|
1067delCC, 1068delCA, 1069delAA, 1070delAC, 1071delCA, 1072delAT, 1073delTA,
|
1074delAA, 1075delAC, 1076delCA, 1077delAG, 1078delGA, 1079delAT, 1080delTG,
|
1081delGG, 1082delGG, 1083delGC, 1084delCT, 1085delTG, 1086delGG, 1087delGA,
|
1088delAA, 1089delAG, 1090delGT, 1091delTA, 1092delAA, 1093delAG, 1094delGG,
|
1095delGA, 1096delAA, 1097delAA, 1098delAC, 1099delCA, 1100delAT, 1101delTG,
|
1102delGT, 1103delTA, 1104delAA, 1105delAT, 1106delTG, 1107delGA, 1108delAT,
|
1109delTA, 1110delAG, 1111delGG, 1112delGC, 1113delCG, 1114delGG, 1115delGA,
|
1116delAC, 1117delCT, 1118delTC, 1119delCC, 1120delCC, 1121delCA, 1122delAG,
|
1123delGC, 1124delCA, 1125delAC, 1126delCA, 1127delAG, 1128delGA, 1129delAA,
|
1130delAA, 1131delAA, 1132delAA, 1133delAA, 1134delAA, 1135delAG, 1136delGG,
|
1137delGT, 1138delTA, 1139delAG, 1140delGA, 1141delAT, 1142delTC, 1143delCT,
|
1144delTG, 1145delGA, 1146delAA, 1147delAT, 1148delTG, 1149delGC, 1150delCT,
|
1151delTG, 1152delGA, 1153delAT, 1154delTC, 1155delCC, 1156delCC, 1157delCC,
|
1158delCT, 1159delTG, 1160delGT, 1161delTG, 1162delGT, 1163delTG, 1164delGA,
|
1165delAG, 1166delGA, 1167delAG, 1168delGA, 1169delAA, 1170delAA, 1171delAA,
|
1172delAG, 1173delGA, 1174delAA, 1175delAT, 1176delTG, 1177delGG, 1178delGA,
|
1179delAA, 1180delAT, 1181delTA, 1182delAA, 1183delAG, 1184delGC, 1185delCA,
|
1186delAG, 1187delGA, 1188delAA, 1189delAA, 1190delAC, 1191delCT, 1192delTG,
|
1193delGC, 1194delCC, 1195delCA, 1196delAT, 1197delTG, 1198delGC, 1199delCT,
|
1200delTC, 1201delCA, 1202delAG, 1203delGA, 1204delAG, 1205delGA, 1206delAA,
|
1207delAT, 1208delTC, 1209delCC, 1210delCT, 1211delTA, 1212delAG, 1213delGA,
|
1214delAG, 1215delGA, 1216delAT, 1217delTA, 1218delAC, 1219delCT, 1220delTG,
|
1221delGA, 1222delAA, 1223delAG, 1224delGA, 1225delAT, 1226delTG, 1227delGT,
|
1228delTT, 1229delTC, 1230delCC, 1331delCT, 1232delTT, 1233delTG, 1234delGG,
|
1235delGA, 1236delAT, 1237delTA, 1238delAA, 1239delAC, 1240delCA, 1241delAC,
|
1242delCT, 1243delTA, 1244delAA, 1245delAA, 1246delAT, 1247delTA, 1248delAG,
|
1249delGC, 1250delCA, 1251delAG, 1252delGC, 1253delCA, 1254delAT, 1255delTT,
|
1256delTC, 1257delCA, 1258delAG, 1259delGA, 1260delAA, 1261delAA, 1262delAG,
|
1263delGT, 1264delTT, 1265delTA, 1266delAA, 1267delAT, 1268delTG, 1269delGA,
|
1270delAG, 1271delGT, 1272delTG, 1273delGG, 1274delGT, 1275delTT, 1276delTT,
|
1277delTT, 1278delTC, 1279delCC, 1280delCA, 1281delAG, 1282delGA, 1283delAA,
|
1284delAG, 1285delGT, 1286delTG, 1287delGA, 1288delAT, 1289delTG, 1290delGA,
|
1291delAA, 1292delAC, 1293delCT, 1294delTG, 1295delGT, 1296delTT, 1297delTA,
|
1298delAG, 1299delGG, 1300delGT, 1301delTT, 1302delTC, 1303delCT, 1304delTG,
|
1305delGA, 1306delAT, 1307delTG, 1308delGA, 1309delAC, 1310delCT, 1311delTC,
|
1312delCA, 1313delAC, 1314delCA, 1315delAT, 1316delTG, 1317delGA, 1318delAT,
|
1319delTG, 1320delGG, 1321delGG, 1322delGG, 1323delGA, 1324delAG, 1325delGT,
|
1326delTC, 1327delCT, 1328delTG, 1329delGA, 1330delAA, 1331delAT, 1332delTC,
|
1333delCA, 1334delAA, 1335delAA, 1336delAT, 1337delTG, 1338delGC, 1339delCC,
|
1340delCA, 1341delAA, 1342delAA, 1343delAG, 1344delGT, 1345delTA, 1346delAG,
|
1347delGC, 1348delCT, 1349delTG, 1350delGA, 1351delAT, 1352delTG, 1353delGT,
|
1354delTA, 1355delAT, 1356delTT, 1357delTG, 1358delGG, 1359delGA, 1360delAC,
|
1361delCG, 1362delGT, 1363delTT, 1364delTC, 1365delCT, 1366delTA, 1367delAA,
|
1368delAA, 1369delAT, 1370delTG, 1371delGA, 1372delAG, 1373delGG, 1374delGT,
|
1375delTA, 1376delAG, 1377delGA, 1378delAT, 1379delTG, 1380delGA, 1381delAA,
|
1382delAT, 1383delTA, 1384delAT, 1385delTT, 1386delTC, 1387delCT, 1388delTG,
|
1389delGG, 1390delGT, 1391delTT, 1392delTC, 1393delCT, 1394delTT, 1395delTC,
|
1396delCA, 1397delAG, 1398delGA, 1399delAG, 1400delGA, 1401delAA, 1402delAA,
|
1403delAA, 1404delAT, 1405delTA, 1406delAG, 1407delGA, 1408delAC, 1409delCT,
|
1410delTT, 1411delTA, 1412delAC, 1413delCT, 1414delTG, 1415delGG, 1416delGC,
|
1417delCC, 1418delCA, 1419delAG, 1420delGT, 1421delTG, 1422delGA, 1423delAT,
|
1424delTC, 1425delCC, 1426delCT, 1427delTC, 1428delCA, 1429delAT, 1430delTG,
|
1431delGA, 1432delAG, 1433delGG, 1434delGC, 1435delCT, 1436delTT, 1437delTT,
|
1438delTA, 1439delAA, 1440delAT, 1441delTA, 1442delAT, 1443delTG, 1444delGT,
|
1445delTA, 1446delAA, 1447delAA, 1448delAA, 1449delAG, 1450delGT, 1451delTG,
|
1452delGA, 1453delAA, 1454delAA, 1455delAG, 1456delGA, 1457delAG, 1458delGT,
|
1459delTT, 1460delTC, 1461delCA, 1462delAC, 1463delCT, 1464delTC, 1465delCC,
|
1466delCA, 1467delAA, 1468delAA, 1469delAT, 1470delTC, 1471delCA, 1472delAG,
|
1473delGT, 1474delTA, 1475delAG, 1476delGA, 1477delAG, 1478delGA, 1479delAG,
|
1480delGT, 1481delTA, 1482delAA, 1483delAT, 1484delTA, 1485delAT, 1486delTT,
|
1487delTG, 1488delGA, 1489delAA, 1490delAG, 1491delGA, 1492delAC, 1493delCA,
|
1494delAA, 1495delAA, 1496delAA, 1497delAT, 1498delTA, 1499delAT, 1500delTT,
|
1501delTT, 1502delTG, 1503delGG, 1504delGG, 1505delGA, 1506delAA, 1507delAA,
|
1508delAA, 1509delAC, 1510delCC, 1511delCT, 1512delTA, 1513delAT, 1514delTC,
|
1515delCG, 1516delGG, 1517delGA, 1518delAA, 1519delAG, 1520delGA, 1521delAA,
|
1522delAG, 1523delGG, 1524delGC, 1525delCA, 1526delAA, 1527delAG, 1528delGC,
|
1529delCC, 1530delCT, 1531delTC, 1532delCC, 1533delCC, 1534delCC, 1535delCA,
|
1536delAA, 1537delAC, 1538delCT, 1539delTT, 1540delTA, 1541delAA, 1542delAG,
|
1543delGC, 1544delCC, 1545delCA, 1546delAT, 1547delTG, 1548delGT, 1549delTA,
|
1550delAA, 1551delAC, 1552delCT, 1553delTG, 1554delGA, 1555delAA, 1556delAA,
|
1557delAA, 1558delAT, 1559delTC, 1560delCT, 1561delTA, 1562delAA, 1563delAT,
|
1564delTT, 1565delTA, 1566delAT, 1567delTA, 1568delAG, 1569delGG, 1570delGA,
|
1571delAG, 1572delGC, 1573delCA, 1574delAT, 1575delTT, 1576delTT, 1577delTG,
|
1578delGT, 1579delTT, 1580delTA, 1581delAC, 1582delCT, 1583delTG, 1584delGA,
|
1585delAG, 1586delGC, 1587delCC, 1588delCA, 1589delAC, 1590delCA, 1591delAG,
|
1592delGA, 1593delAT, 1594delTA, 1595delAA, 1596delAT, 1597delTA, 1598delAC,
|
1599delCA, 1600delAA, 1601delAG, 1602delGA, 1603delAG, 1604delGC, 1605delCG,
|
1606delGT, 1607delTC, 1608delCC, 1609delCC, 1610delCC, 1611delCT, 1612delTC,
|
1613delCA, 1614delAC, 1615delCA, 1616delAA, 1617delAA, 1618delAT, 1619delTA,
|
1620delAA, 1621delAA, 1622delAT, 1623delTT, 1624delTA, 1625delAA, 1626delAA,
|
1627delAG, 1628delGC, 1629delCG, 1630delGT, 1631delTA, 1632delAA, 1633delAA,
|
1634delAA, 1635delAG, 1636delGG, 1637delGA, 1638delAG, 1639delGA, 1640delAC,
|
1641delCC, 1642delCT, 1643delTA, 1644delAC, 1645delCA, 1646delAT, 1647delTC,
|
1648delCA, 1649delAG, 1650delGG, 1651delGC, 1652delCC, 1653delCT, 1654delTT,
|
1655delTC, 1656delCA, 1657delAT, 1658delTC, 1659delCC, 1660delCT, 1661delTG,
|
1662delGA, 1663delAG, 1664delGG, 1665delGA, 1666delAT, 1667delTT, 1668delTT,
|
1669delTT, 1670delTA, 1671delAT, 1672delTC, 1673delCA, 1674delAA, 1675delAG,
|
1676delGA, 1677delAA, 1678delAA, 1679delAG, 1680delGC, 1681delCA, 1682delAG,
|
1683delGA, 1684delAT, 1685delTT, 1686delTT, 1687delTG, 1688delGG, 1689delGC,
|
1690delCA, 1691delAG, 1692delGT, 1693delTT, 1694delTC, 1695delCA, 1696delAA,
|
1697delAA, 1698delAA, 1699delAG, 1700delGA, 1701delAC, 1702delCT, 1703delTC,
|
1704delCC, 1705delCT, 1706delTG, 1707delGA, 1708delAA, 1709delAA, 1710delAT,
|
1711delTG, 1712delGA, 1713delAT, 1714delTA, 1715delAA, 1716delAA, 1717delAT,
|
1718delTC, 1719delCA, 1720delAG, 1721delGG, 1722delGG, 1723delGA, 1724delAA,
|
1725delAC, 1726delCT, 1727delTA, 1728delAA, 1729delAC, 1730delCC, 1731delCA,
|
1732delAA, 1733delAA, 1734delAC, 1735delCG, 1736delGG, 1737delGA, 1738delAG,
|
1739delGC, 1740delCA, 1741delAG, 1742delGA, 1743delAA, 1744delAT, 1745delTG,
|
1746delGG, 1747delGT, 1748delTC, 1749delCA, 1750delAA, 1751delAG, 1752delGT,
|
1753delTG, 1754delGA, 1755delAT, 1756delTG, 1757delGA, 1758delAA, 1759delAT,
|
1760delTA, 1761delAT, 1762delTT, 1763delTA, 1764delAC, 1765delCT, 1766delTA,
|
1767delAA, 1768delAT, 1769delTA, 1770delAG, 1771delGT, 1772delTG, 1773delGG,
|
1774delGT, 1775delTC, 1776delCA, 1777delAT, 1778delTG, 1779delGA, 1780delAG,
|
1781delGA, 1782delAA, 1783delAT, 1784delTA, 1785delAA, 1786delAA, 1787delAA,
|
1788delAC, 1789delCA, 1790delAA, 1791delAA, 1792delAA, 1793delAG, 1794delGG,
|
1795delGT, 1796delTG, 1797delGA, 1798delAT, 1799delTT, 1800delTC, 1801delCT,
|
1802delTA, 1803delAT, 1804delTT, 1805delTC, 1806delCA, 1807delAG, 1808delGA,
|
1809delAA, 1810delAT, 1811delTG, 1812delGA, 1813delAG, 1814delGA, 1815delAA,
|
1816delAA, 1817delAA, 1818delAA, 1819delAT, 1820delTC, 1821delCC, 1822delCT,
|
1823delTA, 1824delAA, 1825delAC, 1826delCC, 1827delCC, 1828delCA, 1829delAA,
|
1830delAT, 1831delTA, 1832delAG, 1833delGA, 1834delAA, 1835delAT, 1836delTC,
|
1837delCA, 1838delAC, 1839delCT, 1840delTC, 1841delCG, 1842delGA, 1843delAA,
|
1844delAA, 1845delAA, 1846delAA, 1847delAG, 1848delGA, 1849delAA, 1850delAT,
|
1851delTC, 1852delCT, 1853delTG, 1854delGC, 1855delCT, 1856delTT, 1857delTT,
|
1858delTC, 1859delCA, 1860delAA, 1861delAA, 1862delAA, 1863delAC, 1864delCG,
|
1865delGA, 1866delAA, 1867delAA, 1868delAG, 1869delGC, 1870delCT, 1871delTG,
|
1872delGA, 1873delAA, 1874delAC, 1875delCC, 1876delCT, 1877delTA, 1878delAT,
|
1879delTA, 1880delAA, 1881delAG, 1882delGC, 1883delCA, 1884delAG, 1885delGC,
|
1886delCA, 1887delAG, 1888delGT, 1889delTA, 1890delAT, 1891delTA, 1892delAA,
|
1893delAG, 1894delGC, 1895delCA, 1896delAA, 1897delAT, 1898delTA, 1899delAT,
|
1900delTG, 1901delGG, 1902delGA, 1903delAA, 1904delAC, 1905delCT, 1906delTC,
|
1907delCG, 1908delGA, 1909delAA, 1910delAT, 1911delTT, 1912delTA, 1913delAA,
|
1914delAA, 1915delAT, 1916delTA, 1917delAT, 1918delTC, 1919delCC, 1920delCA,
|
1921delAC, 1922delCA, 1923delAA, 1924delAT, 1925delTT, 1926delTC, 1927delCA,
|
1928delAA, 1929delAA, 1930delAA, 1931delAG, 1932delGC, 1933delCA, 1934delAC,
|
1935delCC, 1936delCT, 1937delTA, 1938delAA, 1939delAA, 1940delAA, 1941delAA,
|
1942delAG, 1943delGA, 1944delAA, 1945delAT, 1946delTA, 1947delAG, 1948delGG,
|
1949delGC, 1950delCT, 1951delTG, 1952delGA, 1953delAG, 1954delGG, 1955delGA,
|
1956delAG, 1957delGG, 1958delGA, 1959delAA, 1960delAG, 1961delGT, 1962delTC,
|
1963delCT, 1964delTT, 1965delTC, 1966delCT, 1967delTA, 1968delAC, 1969delCC,
|
1970delCA, 1971delAG, 1972delGG, 1973delGC, 1974delCA, 1975delAT, 1976delTA,
|
1977delAT, 1978delTT, 1979delTC, 1980delCA, 1981delAT, 1982delTG, 1983delGC,
|
1984delCG, 1985delGC, 1986delCT, 1987delTT, 1988delTG, 1989delGA, 1990delAA,
|
1991delAC, 1992delCT, 1993delTA, 1994delAG, 1995delGT, 1996delTA, 1997delAG,
|
1998delGT, 1999delTC, 2000delCA, 2001delAG, 2002delGT, 2003delTA, 2004delAG,
|
2005delGA, 2006delAA, 2007delAA, 2008delAT, 2009delTC, 2010delCT, 2011delTA,
|
2012delAA, 2013delAG, 2014delGC, 2015delCC, 2016delCC, 2017delCA, 2018delAC,
|
2019delCC, 2020delCT, 2021delTA, 2022delAA, 2023delAT, 2024delTT, 2025delTG,
|
2026delGT, 2027delTA, 2028delAC, 2029delCT, 2030delTG, 2031delGA, 2032delAA,
|
2033delAT, 2034delTT, 2035delTG, 2036delGC, 2037delCA, 2038delAA, 2039delAA,
|
2040delAT, 2041delTT, 2042delTG, 2043delGA, 2044delAT, 2045delTA, 2046delAG,
|
2047delGT, 2048delTT, 2049delTG, 2050delGT, 2051delTT, 2052delTC, 2053delCT,
|
2054delTA, 2055delAG, 2056delGC, 2057delCA, 2058delAG, 2059delGT, 2060delTG,
|
2061delGA, 2062delAA, 2063delAG, 2064delGA, 2065delAG, 2066delGA, 2067delAT,
|
2068delTA, 2069delAA, 2070delAA, 2071delAG, 2072delGA, 2073delAA, 2074delAA,
|
2075delAA, 2076delAA, 2077delAA, 2078delAA, 2079delAA, 2080delAG, 2081delGT,
|
2082delTA, 2083delAC, 2084delCA, 2085delAA, 2086delAC, 2087delCC, 2088delCA,
|
2089delAA, 2090delAA, 2091delAT, 2092delTG, 2093delGC, 2094delCC, 2095delCA,
|
2096delAG, 2097delGT, 2098delTC, 2099delCA, 2100delAG, 2101delGG, 2102delGC,
|
2103delCA, 2104delAC, 2105delCA, 2106delAG, 2107delGC, 2108delCA, 2109delAG,
|
2110delGA, 2111delAA, 2112delAA, 2113delAC, 2114delCC, 2115delCT, 2116delTA,
|
2117delAC, 2118delCA, 2119delAA, 2120delAC, 2121delCT, 2122delTC, 2123delCA,
|
2124delAT, 2125delTG, 2126delGG, 2127delGA, 2128delAA, 2129delAG, 2130delGG,
|
2131delGT, 2132delTA, 2133delAA, 2134delAA, 2135delAG, 2136delGA, 2137delAA,
|
2138delAC, 2139delCC, 2140delCT, 2141delTG, 2142delGC, 2143delCA, 2144delAA,
|
2145delAC, 2146delCT, 2147delTG, 2148delGG, 2149delGA, 2150delAG, 2151delGC,
|
2152delCC, 2153delCA, 2154delAA, 2155delAG, 2156delGA, 2157delAA, 2158delAG,
|
2159delGA, 2160delAG, 2161delGT, 2162delTA, 2163delAA, 2164delAC, 2165delCA,
|
2166delAA, 2167delAG, 2168delGC, 2169delCC, 2170delCA, 2171delAA, 2172delAA,
|
2173delAT, 2174delTG, 2175delGA, 2176delAA, 2177delAC, 2178delCA, 2179delAG,
|
2180delGA, 2181delAC, 2182delCA, 2183delAA, 2184delAG, 2185delGT, 2186delTA,
|
2187delAA, 2188delAA, 2189delAA, 2190delAG, 2191delGA, 2192delAC, 2193delCA,
|
2194delAT, 2195delTG, 2196delGA, 2197delAC, 2198delCA, 2199delAG, 2200delGT,
|
2201delTG, 2202delGA, 2203delAT, 2204delTA, 2205delAC, 2206delCT, 2207delTT,
|
2208delTT, 2209delTC, 2210delCC, 2211delCC, 2212delCA, 2213delAG, 2214delGA,
|
2215delAG, 2216delGC, 2217delCT, 2218delTG, 2219delGA, 2220delAA, 2221delAG,
|
2222delGT, 2223delTT, 2224delTA, 2225delAA, 2226delAC, 2227delCA, 2228delAA,
|
2229delAA, 2230delAT, 2231delTG, 2232delGC, 2233delCA, 2234delAC, 2235delCC,
|
2236delCT, 2237delTG, 2238delGG, 2239delGT, 2240delTT, 2241delTC, 2242delCT,
|
2243delTT, 2244delTT, 2245delTT, 2246delTA, 2247delAC, 2248delCT, 2249delTA,
|
2250delAA, 2251delAG, 2252delGT, 2253delTG, 2254delGT, 2255delTT, 2256delTC,
|
2257delCA, 2258delAA, 2259delAA, 2260delAT, 2261delTA, 2262delAC, 2263delCC,
|
2264delCA, 2265delAG, 2266delGT, 2267delTG, 2268delGA, 2269delAA, 2270delAC,
|
2271delCT, 2272delTT, 2273delTA, 2274delAA, 2275delAA, 2276delAG, 2277delGA,
|
2278delAA, 2279delAT, 2280delTT, 2281delTT, 2282delTG, 2283delGT, 2284delTC,
|
2285delCA, 2286delAA, 2287delAT, 2288delTC, 2289delCC, 2290delCT, 2291delTA,
|
2292delAG, 2293delGC, 2294delCC, 2295delCT, 2296delTT, 2297delTC, 2298delCC,
|
2299delCA, 2300delAA, 2301delAG, 2302delGA, 2303delAG, 2304delGA, 2305delAA,
|
2306delAG, 2307delGA, 2308delAA, 2309delAA, 2310delAA, 2311delAA, 2312delAG,
|
2313delGA, 2314delAA, 2315delAG, 2316delGA, 2317delAG, 2318delGA, 2319delAA,
|
2320delAA, 2321delAC, 2322delCT, 2323delTA, 2324delAG, 2325delGA, 2326delAA,
|
2327delAA, 2328delAC, 2329delCA, 2330delAG, 2331delGT, 2332delTT, 2333delTA,
|
2334delAA, 2335delAA, 2336delAG, 2337delGT, 2338delTG, 2339delGT, 2340delTC,
|
2341delCT, 2342delTA, 2343delAA, 2344delAT, 2345delTA, 2346delAA, 2347delAT,
|
2348delTG, 2349delGC, 2350delCT, 2351delTG, 2352delGA, 2353delAA, 2354delAG,
|
2355delGA, 2356delAC, 2357delCC, 2358delCC, 2359delCC, 2360delCA, 2361delAA,
|
2362delAA, 2363delAG, 2364delGA, 2365delAT, 2366delTC, 2367delCT, 2368delTC,
|
2369delCA, 2370delAT, 2371delTG, 2372delGT, 2373delTT, 2374delTA, 2375delAA,
|
2376delAG, 2377delGT, 2378delTG, 2379delGG, 2380delGA, 2381delAG, 2382delGA,
|
2383delAA, 2384delAA, 2385delAG, 2386delGG, 2387delGG, 2388delGT, 2389delTT,
|
2390delTT, 2391delTT, 2392delTG, 2393delGC, 2394delCA, 2395delAA, 2396delAA,
|
2397delAC, 2398delCT, 2399delTG, 2400delGA, 2401delAA, 2402delAA, 2403delAG,
|
2404delGA, 2405delAT, 2406delTC, 2407delCT, 2408delTG, 2409delGT, 2410delTA,
|
2411delAG, 2412delGA, 2413delAG, 2414delGA, 2415delAG, 2416delGT, 2417delTA,
|
2418delAG, 2419delGC, 2420delCA, 2421delAG, 2422delGT, 2423delTA, 2424delAT,
|
2425delTT, 2426delTT, 2427delTC, 2428delCA, 2429delAC, 2430delCT, 2431delTG,
|
2432delGG, 2433delGT, 2434delTA, 2435delAC, 2436delCC, 2437delCT, 2438delTG,
|
2439delGG, 2440delGT, 2441delTA, 2442delAC, 2443delCT, 2444delTG, 2445delGA,
|
2446delAT, 2447delTT, 2448delTA, 2449delAT, 2450delTG, 2451delGG, 2452delGC,
|
2453delCA, 2454delAC, 2455delCT, 2456delTC, 2457delCA, 2458delAG, 2459delGG,
|
2460delGA, 2461delAA, 2462delAA, 2463delAG, 2464delGT, 2465delTA, 2466delAT,
|
2467delTC, 2468delCT, 2469delTC, 2470delCG, 2471delGT, 2472delTT, 2473delTA,
|
2474delAC, 2475delCT, 2476delTG, 2477delGG, 2478delGA, 2479delAA, 2480delAG,
|
2481delGT, 2482delTT, 2483delTA, 2484delAG, 2485delGC, 2486delCA, 2487delAC,
|
2488delCT, 2489delTC, 2490delCT, 2491delTA, 2492delAG, 2493delGG, 2494delGG,
|
2495delGA, 2496delAA, 2497delAG, 2498delGG, 2499delGC, 2500delCA, 2501delAA,
|
2502delAA, 2503delAA, 2504delAA, 2505delAC, 2506delCA, 2507delAG, 2508delGA,
|
2509delAA, 2510delAC, 2511delCC, 2512delCA, 2513delAA, 2514delAA, 2515delAT,
|
2516delTA, 2517delAA, 2518delAA, 2519delAT, 2520delTG, 2521delGT, 2522delTG,
|
2523delGT, 2524delTG, 2525delGA, 2526delAG, 2527delGT, 2528delTC, 2529delCA,
|
2530delAG, 2531delGT, 2532delTG, 2533delGT, 2534delTG, 2535delGC, 2536delCA,
|
2537delAG, 2538delGC, 2539delCA, 2540delAT, 2541delTT, 2542delTT, 2543delTG,
|
2544delGA, 2545delAA, 2546delAA, 2547delAA, 2548delAC, 2549delCC, 2550delCC,
|
2551delCC, 2552delCA, 2553delAA, 2554delAG, 2555delGG, 2556delGG, 2557delGA,
|
2558delAC, 2559delCT, 2560delTA, 2561delAA, 2562delAT, 2563delTT, 2564delTC,
|
2565delCA, 2566delAT, 2567delTG, 2568delGG, 2569delGT, 2570delTT, 2571delTG,
|
2572delGT, 2573delTT, 2574delTC, 2575delCC, 2576delCA, 2577delAA, 2578delAA,
|
2579delAG, 2580delGA, 2581delAT, 2582delTA, 2583delAA, 2584delAT, 2585delTA,
|
2586delAG, 2587delGA, 2588delAA, 2589delAA, 2590delAT, 2591delTG, 2592delGA,
|
2593delAC, 2594delCA, 2595delAC, 2596delCA, 2597delAG, 2598delGA, 2599delAA,
|
2600delAG, 2601delGG, 2602delGC, 2603delCT, 2604delTT, 2605delTT, 2606delTA,
|
2607delAA, 2608delAG, 2609delGT, 2610delTA, 2611delAT, 2612delTC, 2613delCC,
|
2614delCA, 2615delAT, 2616delTT, 2617delTG, 2618delGG, 2619delGG, 2620delGA,
|
2621delAC, 2622delCA, 2623delAT, 2624delTG, 2625delGA, 2626delAA, 2627delAG,
|
2628delGT, 2629delTT, 2630delTA, 2631delAA, 2632delAC, 2633delCC, 2634delCA,
|
2635delAC, 2636delCA, 2637delAG, 2638delGT, 2639delTC, 2640delCG, 2641delGG,
|
2642delGG, 2643delGA, 2644delAA, 2645delAA, 2646delAC, 2647delCA, 2648delAA,
|
2649delAG, 2650delGC, 2651delCA, 2652delAT, 2653delTA, 2654delAG, 2655delGA,
|
2656delAA, 2657delAA, 2658delAT, 2659delTG, 2660delGG, 2661delGA, 2662delAA,
|
2663delAG, 2664delGA, 2665delAA, 2666delAA, 2667delAG, 2668delGT, 2669delTG,
|
2670delGA, 2671delAA, 2672delAC, 2673delCT, 2674delTT, 2675delTG, 2676delGA,
|
2677delAT, 2678delTG, 2679delGC, 2680delCT, 2681delTC, 2682delCA, 2683delAG,
|
2684delGT, 2685delTA, 2686delAT, 2687delTT, 2688delTT, 2689delTG, 2690delGC,
|
2691delCA, 2692delAG, 2693delGA, 2694delAA, 2695delAT, 2696delTA, 2697delAC,
|
2698delCA, 2699delAT, 2700delTT, 2701delTC, 2702delCA, 2703delAA, 2704delAG,
|
2705delGG, 2706delGT, 2707delTT, 2708delTT, 2709delTC, 2710delCA, 2711delAA,
|
2712delAA, 2713delAG, 2714delGC, 2715delCG, 2716delGC, 2717delCC, 2718delCA,
|
2719delAG, 2720delGT, 2721delTC, 2722delCA, 2723delAT, 2724delTT, 2725delTT,
|
2726delTG, 2727delGC, 2728delCT, 2729delTC, 2730delCT, 2731delTG, 2732delGT,
|
2733delTT, 2734delTT, 2735delTT, 2736delTC, 2737delCA, 2738delAA, 2739delAA,
|
2740delAT, 2741delTC, 2742delCC, 2743delCA, 2744delAG, 2745delGG, 2746delGA,
|
2747delAA, 2748delAA, 2749delAT, 2750delTG, 2751delGC, 2752delCA, 2753delAG,
|
2754delGA, 2755delAA, 2756delAG, 2757delGA, 2758delAG, 2759delGG, 2760delGA,
|
2761delAA, 2762delAT, 2763delTG, 2764delGT, 2765delTG, 2766delGC, 2767delCA,
|
2768delAA, 2769delAC, 2770delCA, 2771delAT, 2772delTT, 2773delTC, 2774delCT,
|
2775delTC, 2776delCT, 2777delTG, 2778delGC, 2779delCC, 2780delCC, 2781delCA,
|
2782delAC, 2783delCT, 2784delTC, 2785delCT, 2786delTG, 2787delGG, 2788delGG,
|
2789delGT, 2790delTC, 2791delCC, 2792delCT, 2793delTT, 2794delTA, 2795delAA,
|
2796delAA, 2797delAG, 2798delGA, 2799delAA, 2800delAA, 2801delAC, 2802delCA,
|
2803delAA, 2804delAA, 2805delAG, 2806delGT, 2807delTC, 2808delCC, 2809delCA,
|
2810delAA, 2811delAA, 2812delAA, 2813delAG, 2814delGT, 2815delTC, 2816delCA,
|
2817delAC, 2818delCT, 2819delTT, 2820delTT, 2821delTT, 2822delTG, 2823delGA,
|
2824delAA, 2825delAT, 2826delTG, 2827delGT, 2828delTG, 2829delGA, 2830delAA,
|
2831delAC, 2832delCA, 2833delAA, 2834delAA, 2835delAA, 2836delAG, 2837delGG,
|
2838delGA, 2839delAA, 2840delAG, 2841delGA, 2842delAA, 2843delAA, 2844delAA,
|
2845delAT, 2846delTC, 2847delCA, 2848delAA, 2849delAG, 2850delGG, 2851delGA,
|
2852delAA, 2853delAA, 2854delAG, 2855delGA, 2856delAA, 2857delAT, 2858delTG,
|
2859delGA, 2860delAG, 2861delGT, 2862delTC, 2863delCT, 2864delTA, 2865delAA,
|
2866delAT, 2867delTA, 2868delAT, 2869delTC, 2870delCA, 2871delAA, 2872delAG,
|
2873delGC, 2874delCC, 2875delCT, 2876delTG, 2877delGT, 2878delTA, 2879delAC,
|
2880delCA, 2881delAG, 2882delGA, 2883delAC, 2884delCA, 2885delAG, 2886delGT,
|
2887delTT, 2888delTA, 2889delAA, 2890delAT, 2891delTA, 2892delAT, 2893delTC,
|
2894delCA, 2895delAC, 2896delCT, 2897delTG, 2898delGC, 2899delCA, 2900delAG,
|
2901delGG, 2902delGC, 2903delCT, 2904delTT, 2905delTT, 2906delTC, 2907delCC,
|
2908delCT, 2909delTG, 2910delGT, 2911delTG, 2912delGG, 2913delGT, 2914delTT,
|
2915delTG, 2916delGG, 2917delGT, 2918delTC, 2919delCA, 2920delAG, 2921delGA,
|
2922delAA, 2923delAA, 2924delAG, 2925delGA, 2926delAT, 2927delTA, 2928delAA,
|
2929delAG, 2930delGC, 2931delCC, 2932delCA, 2933delAG, 2934delGT, 2935delTT,
|
2936delTG, 2937delGA, 2938delAT, 2939delTA, 2940delAA, 2941delAT, 2942delTG,
|
2943delGC, 2944delCC, 2945delCA, 2946delAA, 2947delAA, 2948delAT, 2949delTG,
|
2950delGT, 2951delTA, 2952delAG, 2953delGT, 2954delTA, 2955delAT, 2956delTC,
|
2957delCA, 2958delAA, 2959delAA, 2960delAG, 2961delGG, 2962delGA, 2963delAG,
|
2964delGG, 2965delGC, 2966delCT, 2967delTC, 2968delCT, 2969delTA, 2970delAG,
|
2971delGG, 2972delGT, 2973delTT, 2974delTT, 2975delTT, 2976delTG, 2977delGT,
|
2978delTC, 2979delCT, 2980delTA, 2981delAT, 2982delTC, 2983delCA, 2984delAT,
|
2985delTC, 2986delCT, 2987delTC, 2988delCA, 2989delAG, 2990delGT, 2991delTT,
|
2992delTC, 2993delCA, 2994delAG, 2995delGA, 2996delAG, 2997delGG, 2998delGC,
|
2999delCA, 3000delAA, 3001delAC, 3002delCG, 3003delGA, 3004delAA, 3005delAA,
|
3006delAC, 3007delCT, 3008delTG, 3009delGG, 3010delGA, 3011delAC, 3012delCT,
|
3013delTC, 3014delCA, 3015delAT, 3016delTT, 3017delTA, 3018delAC, 3019delCT,
|
3020delTC, 3021delCC, 3022delCA, 3023delAA, 3024delAA, 3025delAT, 3026delTA,
|
3027delAA, 3028delAA, 3029delAC, 3030delCA, 3031delAT, 3032delTG, 3033delGG,
|
3034delGA, 3035delAC, 3036delCT, 3037delTT, 3038delTT, 3039delTT, 3040delTA,
|
3041delAC, 3042delCA, 3043delAA, 3044delAA, 3045delAA, 3046delAC, 3047delCC,
|
3048delCC, 3049delCA, 3050delAT, 3051delTA, 3052delAT, 3053delTC, 3054delCG,
|
3055delGT, 3056delTA, 3057delAT, 3058delTA, 3059delAC, 3060delCC, 3061delCA,
|
3062delAC, 3063delCC, 3064delCA, 3065delAC, 3066delCT, 3067delTT, 3068delTT,
|
3069delTT, 3070delTT, 3071delTC, 3072delCC, 3073delCC, 3074delCA, 3075delAT,
|
3076delTC, 3077delCA, 3078delAA, 3079delAG, 3080delGT, 3081delTC, 3082delCA,
|
3083delAT, 3084delTT, 3085delTT, 3086delTG, 3087delGT, 3088delTT, 3089delTA,
|
3090delAA, 3091delAA, 3092delAA, 3093delAC, 3094delCT, 3095delTA, 3096delAA,
|
3097delAA, 3098delAT, 3099delTG, 3100delGT, 3101delTA, 3102delAA, 3103delAG,
|
3104delGA, 3105delAA, 3106delAA, 3107delAA, 3108delAA, 3109delAT, 3110delTC,
|
3111delCT, 3112delTG, 3113delGC, 3114delCT, 3115delTA, 3116delAG, 3117delGA,
|
3118delAG, 3119delGG, 3120delGA, 3121delAA, 3122delAA, 3123delAA, 3124delAC,
|
3125delCT, 3126delTT, 3127delTT, 3128delTG, 3129delGA, 3130delAG, 3131delGG,
|
3132delGA, 3133delAA, 3134delAC, 3135delCA, 3136delAT, 3137delTT, 3138delTC,
|
3139delCA, 3140delAA, 3141delAT, 3142delTG, 3143delGT, 3144delTC, 3145delCA,
|
3146delAC, 3147delCC, 3148delCT, 3149delTG, 3150delGA, 3151delAA, 3152delAA,
|
3153delAG, 3154delGA, 3155delAG, 3156delGA, 3157delAA, 3158delAA, 3159delAT,
|
3160delTG, 3161delGG, 3162delGG, 3163delGA, 3164delAA, 3165delAA, 3166delAT,
|
3167delTG, 3168delGA, 3169delAG, 3170delGA, 3171delAA, 3172delAC, 3173delCA,
|
3174delAT, 3175delTT, 3176delTC, 3177delCC, 3178delCA, 3179delAA, 3180delAG,
|
3181delGT, 3182delTA, 3183delAC, 3184delCA, 3185delAG, 3186delGT, 3187delTG,
|
3188delGA, 3189delAG, 3190delGC, 3191delCA, 3192delAC, 3193delCA, 3194delAA,
|
3195delAT, 3196delTT, 3197delTA, 3198delAG, 3199delGC, 3200delCC, 3201delCG,
|
3202delGT, 3203delTA, 3204delAA, 3205delAT, 3206delTA, 3207delAA, 3208delAC,
|
3209delCA, 3210delAT, 3211delTT, 3212delTA, 3213delAG, 3214delGA, 3215delAG,
|
3216delGA, 3217delAA, 3218delAA, 3219delAA, 3220delAT, 3221delTG, 3222delGT,
|
3223delTT, 3224delTT, 3225delTT, 3226delTT, 3227delTA, 3228delAA, 3229delAA,
|
3230delAG, 3231delGG, 3232delGA, 3233delAG, 3234delGC, 3235delCC, 3236delCA,
|
3237delAG, 3238delGC, 3239delCT, 3240delTC, 3241delCA, 3242delAA, 3243delAG,
|
3244delGC, 3245delCA, 3246delAA, 3247delAT, 3248delTA, 3249delAT, 3250delTT,
|
3251delTA, 3252delAA, 3253delAT, 3254delTG, 3255delGA, 3256delAA, 3257delAG,
|
3258delGT, 3259delTA, 3260delAG, 3261delGG, 3262delGT, 3263delTT, 3264delTC,
|
3265delCC, 3266delCA, 3267delAG, 3268delGT, 3269delTA, 3270delAC, 3271delCT,
|
3272delTA, 3273delAA, 3274delAT, 3275delTG, 3276delGA, 3277delAA, 3278delAG,
|
3279delGT, 3280delTG, 3281delGG, 3282delGG, 3283delGC, 3284delCT, 3285delTC,
|
3286delCC, 3287delCA, 3288delAG, 3289delGT, 3290delTA, 3291delAT, 3292delTT,
|
3293delTA, 3294delAA, 3295delAT, 3296delTG, 3297delGA, 3298delAA, 3299delAA,
|
3300delAT, 3301delTA, 3302delAG, 3303delGG, 3304delGT, 3305delTT, 3306delTC,
|
3307delCC, 3308delCA, 3309delAG, 3310delGT, 3311delTG, 3312delGA, 3313delAT,
|
3314delTG, 3315delGA, 3316delAA, 3317delAA, 3318delAA, 3319delAC, 3320delCA,
|
3321delAT, 3322delTT, 3323delTC, 3324delCA, 3325delAA, 3326delAG, 3327delGC,
|
3328delCA, 3329delAG, 3330delGA, 3331delAA, 3332delAC, 3333delCT, 3334delTA,
|
3335delAG, 3336delGG, 3337delGT, 3338delTA, 3339delAG, 3340delGA, 3341delAA,
|
3342delAA, 3343delAC, 3344delCA, 3345delAG, 3346delGA, 3347delAG, 3348delGG,
|
3349delGG, 3350delGC, 3351delCC, 3352delCA, 3353delAA, 3354delAA, 3355delAA,
|
3356delAT, 3357delTT, 3358delTG, 3359delGA, 3360delAA, 3361delAT, 3362delTG,
|
3363delGC, 3364delCT, 3365delTA, 3366delAT, 3367delTG, 3368delGC, 3369delCT,
|
3370delTT, 3371delTA, 3372delAG, 3373delGA, 3374delAT, 3375delTT, 3376delTA,
|
3377delAG, 3378delGG, 3379delGG, 3380delGG, 3381delGT, 3382delTT, 3383delTT,
|
3384delTT, 3385delTG, 3386delGC, 3387delCA, 3388delAA, 3389delAC, 3390delCC,
|
3391delCT, 3392delTG, 3393delGA, 3394delAG, 3395delGG, 3396delGT, 3397delTC,
|
3398delCT, 3399delTA, 3400delAT, 3401delTA, 3402delAA, 3403delAA, 3404delAC,
|
3405delCA, 3406delAA, 3407delAA, 3408delAG, 3409delGT, 3410delTC, 3411delCT,
|
3412delTT, 3413delTC, 3414delCC, 3415delCT, 3416delTG, 3417delGG, 3418delGA,
|
3419delAA, 3420delAG, 3421delGT, 3422delTA, 3423delAA, 3424delAT, 3425delTT,
|
3426delTG, 3427delGT, 3428delTA, 3429delAA, 3430delAG, 3431delGC, 3432delCA,
|
3433delAT, 3434delTC, 3435delCC, 3436delCT, 3437delTG, 3438delGA, 3439delAA,
|
3440delAA, 3441delAT, 3442delTA, 3443delAA, 3444delAA, 3445delAA, 3446delAA,
|
3447delAA, 3448delAG, 3449delGC, 3450delCA, 3451delAA, 3452delAG, 3453delGA,
|
3454delAA, 3455delAT, 3456delTA, 3457delAT, 3458delTG, 3459delGA, 3460delAA,
|
3461delAG, 3462delGA, 3463delAA, 3464delAG, 3465delGT, 3466delTA, 3467delAG,
|
3468delGT, 3469delTT, 3470delTC, 3471delCA, 3472delAG, 3473delGA, 3474delAC,
|
3475delCT, 3476delTG, 3477delGT, 3478delTT, 3479delTA, 3480delAA, 3481delAT,
|
3482delTA, 3483delAC, 3484delCA, 3485delAG, 3486delGA, 3487delAT, 3488delTT,
|
3489delTT, 3490delTC, 3491delCT, 3492delTC, 3493delCT, 3494delTC, 3495delCC,
|
3496delCA, 3497delAT, 3498delTA, 3499delAT, 3500delTC, 3501delCT, 3502delTG,
|
3503delGA, 3504delAT, 3505delTT, 3506delTT, 3507delTC, 3508delCA, 3509delAG,
|
3510delGA, 3511delAT, 3512delTA, 3513delAA, 3514delAC, 3515delCT, 3516delTT,
|
3517delTA, 3518delAG, 3519delGA, 3520delAA, 3521delAC, 3522delCA, 3523delAG,
|
3524delGC, 3525delCC, 3526delCT, 3527delTA, 3528delAT, 3529delTG, 3530delGG,
|
3531delGG, 3532delGA, 3533delAA, 3534delAG, 3535delGT, 3536delTA, 3537delAG,
|
3538delGT, 3539delTC, 3540delCA, 3541delAT, 3542delTG, 3543delGC, 3544delCA,
|
3545delAT, 3546delTC, 3547delCT, 3548delTC, 3549delCA, 3550delAG, 3551delGG,
|
3552delGT, 3553delTT, 3554delTT, 3555delTG, 3556delGT, 3557delTT, 3558delTC,
|
3559delCT, 3560delTG, 3561delGA, 3562delAG, 3563delGA, 3564delAC, 3565delCA,
|
3566delAC, 3567delCC, 3568delCT, 3569delTG, 3570delGA, 3571delAT, 3572delTG,
|
3573delGA, 3574delAC, 3575delCC, 3576delCT, 3577delTG, 3578delGT, 3579delTT,
|
3580delTA, 3581delAG, 3582delGA, 3583delAT, 3584delTG, 3585delGA, 3586delAT,
|
3587delTG, 3588delGG, 3589delGT, 3590delTG, 3591delGA, 3592delAA, 3593delAA,
|
3594delAT, 3595delTA, 3596delAA, 3597delAA, 3598delAG, 3599delGG, 3600delGA,
|
3601delAA, 3602delAG, 3603delGA, 3604delAT, 3605delTA, 3606delAC, 3607delCT,
|
3608delTA, 3609delAG, 3610delGT, 3611delTT, 3612delTT, 3613delTT, 3614delTG,
|
3615delGC, 3616delCT, 3617delTG, 3618delGA, 3619delAA, 3620delAA, 3621delAA,
|
3622delAT, 3623delTG, 3624delGA, 3625delAC, 3626delCA, 3627delAT, 3628delTT,
|
3629delTA, 3630delAA, 3631delAG, 3632delGG, 3633delGA, 3634delAA, 3635delAA,
|
3636delAG, 3637delGT, 3638delTT, 3639delTC, 3640delCT, 3641delTG, 3642delGC,
|
3643delCT, 3644delTG, 3645delGT, 3646delTT, 3647delTT, 3648delTT, 3649delTT,
|
3650delTA, 3651delAG, 3652delGC, 3653delCA, 3654delAA, 3655delAA, 3656delAA,
|
3657delAG, 3658delGC, 3659delCG, 3660delGT, 3661delTC, 3662delCC, 3663delCA,
|
3664delAG, 3665delGA, 3666delAG, 3667delGA, 3668delAG, 3669delGG, 3670delGA,
|
3671delAG, 3672delGA, 3673delAG, 3674delGC, 3675delCT, 3676delTT, 3677delTA,
|
3678delAG, 3679delGC, 3680delCA, 3681delAG, 3682delGG, 3683delGA, 3684delAG,
|
3685delGT, 3686delTC, 3687delCC, 3688delCT, 3689delTA, 3690delAG, 3691delGC,
|
3692delCC, 3693delCC, 3694delCT, 3695delTT, 3696delTT, 3697delTC, 3698delCA,
|
3699delAC, 3700delCC, 3701delCC, 3702delCA, 3703delAT, 3704delTA, 3705delAC,
|
3706delCA, 3707delAC, 3708delCA, 3709delAT, 3710delTT, 3711delTT, 3712delTG,
|
3713delGG, 3714delGC, 3715delCT, 3716delTC, 3717delCA, 3718delAG, 3719delGG,
|
3720delGG, 3721delGT, 3722delTT, 3723delTA, 3724delAC, 3725delCC, 3726delCG,
|
3727delGA, 3728delAA, 3729delAG, 3730delGA, 3731delAG, 3732delGG, 3733delGG,
|
3734delGG, 3735delGC, 3736delCC, 3737delCA, 3738delAA, 3739delAG, 3740delGA,
|
3741delAA, 3742delAA, 3743delAT, 3744delTT, 3745delTA, 3746delAG, 3747delGA,
|
3748delAG, 3749delGT, 3750delTC, 3751delCC, 3752delCT, 3753delTC, 3754delCA,
|
3755delAG, 3756delGA, 3757delAA, 3758delAG, 3759delGA, 3760delAG, 3761delGA,
|
3762delAA, 3763delAC, 3764delCT, 3765delTT, 3766delTA, 3767delAT, 3768delTC,
|
3769delCT, 3770delTA, 3771delAG, 3772delGT, 3773delTG, 3774delGA, 3775delAG,
|
3776delGG, 3777delGA, 3778delAT, 3779delTG, 3780delGA, 3781delAA, 3782delAG,
|
3783delGA, 3784delAG, 3785delGC, 3786delCT, 3787delTT, 3788delTC, 3789delCC,
|
3790delCC, 3791delCT, 3792delTG, 3793delGC, 3794delCT, 3795delTT, 3796delTC,
|
3797delCC, 3798delCA, 3799delAA, 3800delAC, 3801delCA, 3802delAC, 3803delCT,
|
3804delTT, 3805delTG, 3806delGT, 3807delTT, 3808delTA, 3809delAT, 3810delTT,
|
3811delTT, 3812delTG, 3813delGG, 3814delGT, 3815delTA, 3816delAA, 3817delAA,
|
3818delAG, 3819delGT, 3820delTA, 3821delAA, 3822delAA, 3823delAC, 3824delCA,
|
3825delAA, 3826delAT, 3827delTA, 3828delAT, 3829delTA, 3830delAC, 3831delCC,
|
3832delCT, 3833delTT, 3834delTC, 3835delCT, 3836delTC, 3837delCA, 3838delAG,
|
3839delGT, 3840delTC, 3841delCT, 3842delTA, 3843delAC, 3844delCT, 3845delTA,
|
3846delAG, 3847delGG, 3848delGC, 3849delCA, 3850delAT, 3851delTA, 3852delAG,
|
3853delGC, 3854delCA, 3855delAC, 3856delCC, 3857delCG, 3858delGT, 3859delTT,
|
3860delTG, 3861delGC, 3862delCT, 3863delTA, 3864delAC, 3865delCC, 3866delCG,
|
3867delGA, 3868delAG, 3869delGT, 3870delTG, 3871delGT, 3872delTC, 3873delCT,
|
3874delTG, 3875delGT, 3876delTC, 3877delCT, 3878delTA, 3879delAA, 3880delAG,
|
3881delGA, 3882delAA, 3883delAC, 3884delCA, 3885delAC, 3886delCA, 3887delAG,
|
3888delGA, 3889delAG, 3890delGG, 3891delGA, 3892delAG, 3893delGA, 3894delAA,
|
3895delAT, 3896delTT, 3897delTT, 3898delTA, 3899delAT, 3900delTT, 3901delTA,
|
3902delAT, 3903delTC, 3904delCA, 3905delAT, 3906delTT, 3907delTG, 3908delGA,
|
3909delAA, 3910delAG, 3911delGA, 3912delAA, 3913delAT, 3914delTA, 3915delAG,
|
3916delGC, 3917delCT, 3918delTT, 3919delTA, 3920delAA, 3921delAA, 3922delAT,
|
3923delTG, 3924delGA, 3925delAC, 3926delCT, 3927delTG, 3928delGC, 3929delCA,
|
3930delAG, 3931delGT, 3932delTA, 3933delAA, 3934delAC, 3935delCC, 3936delCA,
|
3937delAG, 3938delGG, 3939delGT, 3940delTA, 3941delAA, 3942delAT, 3943delTA,
|
3944delAT, 3945delTT, 3946delTG, 3947delGG, 3948delGC, 3949delCA, 3950delAA,
|
3951delAA, 3952delAG, 3953delGG, 3954delGC, 3955delCA, 3956delAT, 3957delTC,
|
3958delCT, 3959delTC, 3960delCA, 3961delAG, 3962delGG, 3963delGA, 3964delAA,
|
3965delAC, 3966delCA, 3967delAT, 3968delTC, 3969delCA, 3970delAC, 3971delCC,
|
3972delCT, 3973delTT, 3974delTA, 3975delAG, 3976delGT, 3977delTG, 3978delGA,
|
3979delAG, 3980delGG, 3981delGA, 3982delAA, 3983delAA, 3984delAC, 3985delCA,
|
3986delAA, 3987delAA, 3988delAA, 3989delAT, 3990delTG, 3991delGT, 3992delTT,
|
3993delTC, 3994delCT, 3995delTG, 3996delGC, 3997delCT, 3998delTA, 3999delAG,
|
4000delGC, 4001delCT, 4002delTT, 4003delTG, 4004delGT, 4005delTT, 4006delTT,
|
4007delTT, 4008delTC, 4009delCT, 4010delTT, 4011delTC, 4012delCA, 4013delAC,
|
4014delCA, 4015delAG, 4016delGT, 4017delTG, 4018delGC, 4019delCA, 4020delAG,
|
4021delGT, 4022delTG, 4023delGA, 4024delAA, 4025delAT, 4026delTT, 4027delTG,
|
4028delGG, 4029delGA, 4030delAA, 4031delAG, 4032delGA, 4033delAC, 4034delCT,
|
4035delTT, 4036delTG, 4037delGA, 4038delAC, 4039delCT, 4040delTG, 4041delGC,
|
4042delCA, 4043delAA, 4044delAA, 4045delAT, 4046delTA, 4047delAC, 4048delCA,
|
4049delAA, 4050delAA, 4051delAC, 4052delCA, 4053delAC, 4054delCC, 4055delCC,
|
4056delCA, 4057delAG, 4058delGG, 4059delGA, 4060delAT, 4061delTC, 4062delCC,
|
4063delCT, 4064delTT, 4065delTT, 4066delTC, 4067delCT, 4068delTT, 4069delTG,
|
4070delGA, 4071delAT, 4072delTT, 4073delTG, 4074delGG, 4075delGT, 4076delTT,
|
4077delTC, 4078delCT, 4079delTT, 4080delTC, 4081delCC, 4082delCA, 4083delAA,
|
4084delAA, 4085delAC, 4086delCA, 4087delAA, 4088delAA, 4089delAT, 4090delTG,
|
4091delGA, 4092delAG, 4093delGG, 4094delGC, 4095delCA, 4096delAT, 4097delTC,
|
4098delCA, 4099delAG, 4100delGT, 4101delTC, 4102delCT, 4103delTG, 4104delGA,
|
4105delAA, 4106delAA, 4107delAG, 4108delGC, 4109delCC, 4110delCA, 4111delAG,
|
4112delGG, 4113delGG, 4114delGA, 4115delAG, 4116delGT, 4117delTT, 4118delTG,
|
4119delGG, 4120delGT, 4121delTC, 4122delCT, 4123delTG, 4124delGA, 4125delAG,
|
4126delGT, 4127delTG, 4128delGA, 4129delAC, 4130delCA, 4131delAA, 4132delAG,
|
4133delGG, 4134delGA, 4135delAA, 4136delAT, 4137delTT, 4138delTG, 4139delGG,
|
4140delGT, 4141delTT, 4142delTT, 4143delTC, 4144delCA, 4145delAG, 4146delGA,
|
4147delAT, 4148delTG, 4149delGA, 4150delAT, 4151delTG, 4152delGA, 4153delAA,
|
4154delAG, 4155delGA, 4156delAA, 4157delAA, 4158delAG, 4159delGA, 4160delAG,
|
4161delGG, 4162delGA, 4163delAA, 4164delAC, 4165delCG, 4166delGG, 4167delGG,
|
4168delGC, 4169delCT, 4170delTT, 4171delTG, 4172delGG, 4173delGA, 4174delAA,
|
4175delAG, 4176delGA, 4177delAA, 4178delAA, 4179delAA, 4180delAT, 4181delTA,
|
4182delAA, 4183delAT, 4184delTC, 4185delCA, 4186delAA, 4187delAG, 4188delGA,
|
4189delAA, 4190delAG, 4191delGA, 4192delAG, 4193delGC, 4194delCA, 4195delAA,
|
4196delAA, 4197delAG, 4198delGC, 4199delCA, 4200delAT, 4201delTG, 4202delGG,
|
4203delGA, 4204delAT, 4205delTT, 4206delTC, 4207delCA, 4208delAA, 4209delAA,
|
4210delAC, 4211delCT, 4212delTT, 4213delTA, 4214delAG, 4215delGG, 4216delGT,
|
4217delTG, 4218delGA, 4219delAA, 4220delAG, 4221delGC, 4222delCA, 4223delAG,
|
4224delGC, 4225delCA, 4226delAT, 4227delTC, 4228delCT, 4229delTG, 4230delGG,
|
4231delGG, 4232delGT, 4233delTG, 4234delGT, 4235delTG, 4236delGA, 4237delAG,
|
4238delGA, 4239delAG, 4240delGT, 4241delTG, 4242delGA, 4243delAA, 4244delAA,
|
4245delAC, 4246delCA, 4247delAA, 4248delAG, 4249delGC, 4250delCG, 4251delGT,
|
4252delTC, 4253delCT, 4254delTC, 4255delCT, 4256delTG, 4257delGA, 4258delAA,
|
4259delAG, 4260delGA, 4261delAC, 4262delCT, 4263delTG, 4264delGC, 4265delCT,
|
4266delTC, 4267delCA, 4268delAG, 4269delGG, 4270delGG, 4271delGC, 4272delCT,
|
4273delTA, 4274delAT, 4275delTC, 4276delCC, 4277delCT, 4278delTC, 4279delCT,
|
4280delTC, 4281delCA, 4282delAG, 4283delGA, 4284delAG, 4285delGT, 4286delTG,
|
4287delGA, 4288delAC, 4289delCA, 4290delAT, 4291delTT, 4292delTT, 4293delTT,
|
4294delTA, 4295delAA, 4296delAC, 4297delCC, 4298delCA, 4299delAC, 4300delCT,
|
4301delTC, 4302delCA, 4303delAG, 4304delGC, 4305delCA, 4306delAG, 4307delGA,
|
4308delAG, 4309delGG, 4310delGG, 4311delGA, 4312delAT, 4313delTA, 4314delAC,
|
4315delCC, 4316delCA, 4317delAT, 4318delTG, 4319delGC, 4320delCA, 4321delAA,
|
4322delAC, 4323delCA, 4324delAT, 4325delTA, 4326delAA, 4327delAC, 4328delCC,
|
4329delCT, 4330delTG, 4331delGA, 4332delAT, 4333delTA, 4334delAA, 4335delAA,
|
4336delAG, 4337delGC, 4338delCT, 4339delTC, 4340delCC, 4341delCA, 4342delAG,
|
4343delGC, 4344delCA, 4345delAG, 4346delGG, 4347delGA, 4348delAA, 4349delAA,
|
4350delAT, 4351delTG, 4352delGG, 4353delGC, 4354delCT, 4355delTG, 4356delGA,
|
4357delAA, 4358delAC, 4359delCT, 4360delTA, 4361delAG, 4362delGA, 4363delAA,
|
4364delAG, 4365delGC, 4366delCT, 4367delTG, 4368delGT, 4369delTG, 4370delGT,
|
4371delTT, 4372delTA, 4373delAG, 4374delGA, 4375delAA, 4376delAC, 4377delCA,
|
4378delAG, 4379delGC, 4380delCA, 4381delAT, 4382delTG, 4383delGG, 4384delGG,
|
4385delGA, 4386delAG, 4387delGC, 4388delCC, 4389delCA, 4390delAG, 4391delGC,
|
4392delCC, 4393delCT, 4394delTT, 4395delTC, 4396delCT, 4397delTA, 4398delAA,
|
4399delAC, 4400delCA, 4401delAG, 4402delGC, 4403delCT, 4404delTA, 4405delAC,
|
4406delCC, 4407delCC, 4408delCT, 4409delTT, 4410delTC, 4411delCC, 4412delCA,
|
4413delAT, 4414delTC, 4415delCA, 4416delAT, 4417delTA, 4418delAA, 4419delAG,
|
4420delGT, 4421delTG, 4422delGA, 4423delAC, 4424delCT, 4425delTC, 4426delCC,
|
4427delCT, 4428delTC, 4429delCT, 4430delTG, 4431delGC, 4432delCC, 4433delCC,
|
4434delCT, 4435delTT, 4436delTG, 4437delGA, 4438delAG, 4439delGG, 4440delGA,
|
4441delAC, 4442delCC, 4443delCT, 4444delTG, 4445delGC, 4446delCG, 4447delGA,
|
4448delAA, 4449delAA, 4450delAT, 4451delTC, 4452delCC, 4453delCA, 4454delAG,
|
4455delGA, 4456delAA, 4457delAC, 4458delCA, 4459delAA, 4460delAA, 4461delAG,
|
4462delGC, 4463delCA, 4464delAC, 4465delCA, 4466delAT, 4467delTC, 4468delCA,
|
4469delAG, 4470delGA, 4471delAA, 4472delAA, 4473delAA, 4474delAA, 4475delAG,
|
4476delGC, 4477delCA, 4478delAG, 4479delGT, 4480delTA, 4481delAT, 4482delTT,
|
4483delTA, 4484delAA, 4485delAC, 4486delCT, 4487delTT, 4488delTC, 4489delCA,
|
4490delAC, 4491delCA, 4492delAG, 4493delGA, 4494delAA, 4495delAA, 4496delAA,
|
4497delAG, 4498delGT, 4499delTA, 4500delAG, 4501delGT, 4502delTG, 4503delGA,
|
4504delAA, 4505delAT, 4506delTA, 4507delAC, 4508delCC, 4509delCC, 4510delCT,
|
4511delTA, 4512delAT, 4513delTA, 4514delAA, 4515delAG, 4516delGC, 4517delCC,
|
4518delCA, 4519delAG, 4520delGA, 4521delAA, 4522delAT, 4523delTC, 4524delCC,
|
4525delCA, 4526delAG, 4527delGA, 4528delAA, 4529delAG, 4530delGG, 4531delGC,
|
4532delCC, 4533delCT, 4534delTT, 4535delTT, 4536delTC, 4537delCT, 4538delTG,
|
4539delGC, 4540delCT, 4541delTG, 4542delGA, 4543delAC, 4544delCA, 4545delAA,
|
4546delAG, 4547delGT, 4548delTT, 4549delTT, 4550delTG, 4551delGA, 4552delAG,
|
4553delGG, 4554delGT, 4555delTG, 4556delGT, 4557delTC, 4558delCT, 4559delTG,
|
4560delGC, 4561delCA, 4562delAG, 4563delGA, 4564delAT, 4565delTA, 4566delAG,
|
4567delGT, 4568delTT, 4569delTC, 4570delCT, 4571delTA, 4572delAC, 4573delCC,
|
4574delCA, 4575delAG, 4576delGT, 4577delTA, 4578delAA, 4579delAA, 4580delAA,
|
4581delAA, 4582delAT, 4583delTA, 4584delAA, 4585delAA, 4586delAG, 4587delGA,
|
4588delAA, 4589delAC, 4590delCC, 4591delCA, 4592delAG, 4593delGG, 4594delGA,
|
4595delAG, 4596delGT, 4597delTG, 4598delGG, 4599delGA, 4600delAA, 4601delAA,
|
4602delAG, 4603delGG, 4604delGT, 4605delTC, 4606delCA, 4607delAT, 4608delTC,
|
4609delCC, 4610delCC, 4611delCC, 4612delCT, 4613delTT, 4614delTC, 4615delCT,
|
4616delTA, 4617delAA, 4618delAA, 4619delAT, 4620delTG, 4621delGC, 4622delCC,
|
4623delCC, 4624delCA, 4625delAT, 4626delTC, 4627delCA, 4628delAT, 4629delTT,
|
4630delTA, 4631delAG, 4632delGA, 4633delAT, 4634delTG, 4635delGA, 4636delAT,
|
4637delTA, 4638delAG, 4639delGG, 4640delGT, 4641delTG, 4642delGG, 4643delGT,
|
4644delTA, 4645delAC, 4646delCA, 4647delAT, 4648delTG, 4649delGC, 4650delCA,
|
4651delAC, 4652delCA, 4653delAG, 4654delGT, 4655delTT, 4656delTG, 4657delGC,
|
4658delCT, 4659delTC, 4660delCT, 4661delTG, 4662delGG, 4663delGG, 4664delGA,
|
4665delAG, 4666delGT, 4667delTC, 4668delCT, 4669delTT, 4670delTC, 4671delCA,
|
4672delAG, 4673delGA, 4674delAA, 4675delAT, 4676delTA, 4677delAG, 4678delGA,
|
4679delAA, 4680delAA, 4681delAC, 4682delCT, 4683delTA, 4684delAC, 4685delCC,
|
4686delCC, 4687delCA, 4688delAT, 4689delTC, 4690delCT, 4691delTC, 4692delCA,
|
4693delAA, 4694delAG, 4695delGA, 4696delAG, 4697delGG, 4698delGA, 4699delAG,
|
4700delGC, 4701delCT, 4702delTC, 4703delCA, 4704delAT, 4705delTT, 4706delTA,
|
4707delAA, 4708delAG, 4709delGG, 4710delGT, 4711delTT, 4712delTG, 4713delGT,
|
4714delTT, 4715delTG, 4716delGA, 4717delAT, 4718delTG, 4719delGT, 4720delTG,
|
4721delGG, 4722delGA, 4723delAG, 4724delGG, 4725delGA, 4726delAG, 4727delGC,
|
4728delCA, 4729delAA, 4730delAC, 4731delCA, 4732delAG, 4733delGC, 4734delCT,
|
4735delTG, 4736delGG, 4737delGA, 4738delAA, 4739delAG, 4740delGA, 4741delAG,
|
4742delGT, 4743delTC, 4744delCT, 4745delTG, 4746delGG, 4747delGG, 4748delGC,
|
4749delCC, 4750delCA, 4751delAC, 4752delCA, 4753delAC, 4754delCG, 4755delGA,
|
4756delAT, 4757delTT, 4758delTT, 4759delTG, 4760delGA, 4761delAC, 4762delCG,
|
4763delGG, 4764delGA, 4765delAA, 4766delAA, 4767delAC, 4768delCA, 4769delAT,
|
4770delTC, 4771delCT, 4772delTT, 4773delTA, 4774delAC, 4775delCT, 4776delTT,
|
4777delTG, 4778delGC, 4779delCC, 4280delCA, 4781delAA, 4782delAG, 4783delGG,
|
4784delGC, 4785delCA, 4786delAA, 4787delAG, 4788delGA, 4789delAT, 4790delTC,
|
4791delCT, 4792delTA, 4793delAG, 4794delGA, 4795delAG, 4796delGG, 4797delGG,
|
4798delGA, 4799delAA, 4800delAC, 4801delCC, 4802delCC, 4803delCC, 4804delCT,
|
4805delTT, 4806delTA, 4807delAC, 4808delCC, 4809delCT, 4810delTG, 4811delGG,
|
4812delGA, 4813delAA, 4814delAT, 4815delTC, 4816delCT, 4817delTG, 4818delGG,
|
4819delGA, 4820delAA, 4821delAT, 4822delTC, 4823delCA, 4824delAG, 4825delGC,
|
4826delCC, 4827delCT, 4828delTC, 4829delCT, 4830delTT, 4831delTC, 4832delCT,
|
4833delTC, 4834delCT, 4835delTG, 4836delGA, 4837delAT, 4838delTG, 4839delGA,
|
4840delAC, 4841delCC, 4842delCC, 4843delCT, 4844delTG, 4845delGA, 4846delAA,
|
4847delAT, 4848delTC, 4849delCT, 4850delTG, 4851delGA, 4852delAT, 4853delTC,
|
4854delCC, 4855delCT, 4856delTT, 4857delTC, 4858delCT, 4859delTG, 4860delGA,
|
4861delAA, 4862delAG, 4863delGA, 4864delAC, 4865delCA, 4866delAG, 4867delGA,
|
4868delAG, 4869delGC, 4870delCC, 4871delCC, 4872delCC, 4873delCA, 4874delAG,
|
4875delGA, 4876delAG, 4877delGT, 4878delTC, 4879delCA, 4880delAG, 4881delGC,
|
4882delCT, 4883delTC, 4884delCG, 4885delGT, 4886delTG, 4887delGT, 4888delTT,
|
4889delTG, 4890delGG, 4891delGC, 4892delCA, 4893delAA, 4894delAC, 4895delCA,
|
4896delAT, 4897delTA, 4898delAC, 4899delCC, 4900delCA, 4901delAT, 4902delTC,
|
4903delCT, 4904delTT, 4905delTC, 4906delCA, 4907delAA, 4908delAC, 4909delCC,
|
4910delCT, 4911delTC, 4912delCT, 4913delTG, 4914delGC, 4915delCA, 4916delAT,
|
4917delTT, 4918delTG, 4919delGA, 4920delAA, 4921delAA, 4922delAG, 4923delGT,
|
4924delTT, 4925delTC, 4926delCC, 4927delCC, 4928delCC, 4929delCA, 4930delAA,
|
4931delAT, 4932delTT, 4933delTG, 4934delGA, 4935delAA, 4936delAA, 4937delAG,
|
4938delGT, 4939delTT, 4940delTG, 4941delGC, 4942delCA, 4943delAG, 4944delGA,
|
4945delAA, 4946delAT, 4947delTC, 4948delCT, 4949delTG, 4950delGC, 4951delCC,
|
4952delCC, 4953delCA, 4954delAG, 4955delGG, 4956delGG, 4957delGT, 4958delTC,
|
4959delCC, 4960delCA, 4961delAG, 4962delGC, 4963delCT, 4964delTG, 4965delGC,
|
4966delCT, 4967delTG, 4968delGC, 4969delCT, 4970delTC, 4971delCA, 4972delAT,
|
4973delTA, 4974delAC, 4975delCT, 4976delTA, 4977delAC, 4978delCT, 4979delTG,
|
4980delGA, 4981delAT, 4982delTA, 4983delAC, 4984delCT, 4985delTG, 4986delGC,
|
4987delCT, 4988delTG, 4989delGG, 4990delGG, 4991delGT, 4992delTA, 4993delAT,
|
4994delTA, 4995delAA, 4996delAT, 4997delTG, 4998delGC, 4999delCA, 5000delAA,
|
5001delAT, 5002delTG, 5003delGG, 5004delGA, 5005delAA, 5006delAG, 5007delGA,
|
5008delAA, 5009delAA, 5010delAG, 5011delGT, 5012delTG, 5013delGT, 5014delTG,
|
5015delGA, 5016delAG, 5017delGC, 5018delCA, 5019delAG, 5020delGG, 5021delGG,
|
5022delGA, 5023delAG, 5024delGA, 5025delAA, 5026delAG, 5027delGC, 5028delCC,
|
5029delCA, 5030delAG, 5031delGA, 5032delAA, 5033delAT, 5034delTT, 5035delTG,
|
5036delGA, 5037delAC, 5038delCA, 5039delAG, 5040delGC, 5041delCT, 5042delTT,
|
5043delTC, 5044delCA, 5045delAA, 5046delAC, 5047delCA, 5048delAG, 5049delGA,
|
5050delAA, 5051delAA, 5052delAG, 5053delGG, 5054delGG, 5055delGT, 5056delTC,
|
5057delCA, 5058delAA, 5059delAC, 5060delCA, 5061delAA, 5062delAA, 5063delAA,
|
5064delAG, 5065delGA, 5066delAA, 5067delAT, 5068delTG, 5069delGT, 5070delTC,
|
5071delCC, 5072delCA, 5073delAT, 5074delTG, 5075delGG, 5076delGT, 5077delTG,
|
5078delGG, 5079delGT, 5080delTG, 5081delGT, 5082delTC, 5083delCT, 5084delTG,
|
5085delGG, 5086delGC, 5087delCC, 5088delCT, 5089delTG, 5090delGA, 5091delAC,
|
5092delCC, 5093delCC, 5094delCC, 5095delCA, 5096delAG, 5097delGA, 5098delAA,
|
5099delAG, 5100delGA, 5101delAA, 5102delAT, 5103delTT, 5104delTT, 5105delTA,
|
5106delAT, 5107delTG, 5108delGC, 5109delCT, 5110delTC, 5111delCG, 5112delGT,
|
5113delTG, 5114delGT, 5115delTA, 5116delAC, 5117delCA, 5118delAA, 5119delAG,
|
5120delGT, 5121delTT, 5122delTT, 5123delTG, 5124delGC, 5125delCC, 5126delCA,
|
5127delAG, 5128delGA, 5129delAA, 5130delAA, 5131delAA, 5132delAC, 5133delCA,
|
5134delAC, 5135delCC, 5136delCA, 5137delAC, 5138delCA, 5139delAT, 5140delTC,
|
5141delCA, 5142delAC, 5143delCT, 5144delTT, 5145delTT, 5146delTA, 5147delAA,
|
5148delAC, 5149delCT, 5150delTA, 5151delAA, 5152delAT, 5153delTC, 5154delCT,
|
5155delTA, 5156delAA, 5157delAT, 5158delTT, 5159delTA, 5160delAC, 5161delCT,
|
5162delTG, 5163delGA, 5164delAA, 5165delAG, 5166delGA, 5167delAG, 5168delGA,
|
5169delAC, 5170delCT, 5171delTA, 5172delAC, 5173delCT, 5174delTC, 5175delCA,
|
5176delAT, 5177delTG, 5178delGT, 5179delTT, 5180delTG, 5181delGT, 5182delTT,
|
5183delTA, 5184delAT, 5185delTG, 5186delGA, 5187delAA, 5188delAA, 5189delAA,
|
5190delAC, 5191delCA, 5192delAG, 5193delGA, 5194delAT, 5195delTG, 5196delGC,
|
5197delCT, 5198delTG, 5199delGA, 5200delAG, 5201delGT, 5202delTT, 5203delTT,
|
5204delTG, 5205delGT, 5206delTG, 5207delGT, 5208delTG, 5209delGT, 5210delTG,
|
5211delGA, 5212delAA, 5213delAC, 5214delCG, 5215delGG, 5216delGA, 5217delAC,
|
5218delCA, 5219delAC, 5220delCT, 5221delTG, 5222delGA, 5223delAA, 5224delAA,
|
5225delAT, 5226delTA, 5227delAT, 5228delTT, 5229delTT, 5230delTT, 5231delTC,
|
5232delCT, 5233delTA, 5234delAG, 5235delGG, 5236delGA, 5237delAA, 5238delAT,
|
5239delTT, 5240delTG, 5241delGC, 5242delCG, 5243delGG, 5244delGG, 5245delGA,
|
5246delAG, 5247delGG, 5248delGA, 5249delAA, 5250delAA, 5251delAA, 5252delAT,
|
5253delTG, 5254delGG, 5255delGG, 5256delGT, 5257delTA, 5258delAG, 5259delGT,
|
5260delTT, 5261delTA, 5262delAG, 5263delGC, 5264delCT, 5265delTA, 5266delAT,
|
5267delTT, 5268delTT, 5269delTC, 5270delCT, 5271delTG, 5272delGG, 5273delGG,
|
5274delGT, 5275delTG, 5276delGA, 5277delAC, 5278delCC, 5279delCC, 5280delCA,
|
5281delAG, 5282delGT, 5283delTC, 5284delCT, 5285delTA, 5286delAT, 5287delTT,
|
5288delTA, 5289delAA, 5290delAA, 5291delAG, 5292delGA, 5293delAA, 5294delAA,
|
5295delAG, 5296delGA, 5297delAA, 5298delAA, 5299delAA, 5300delAA, 5301delAT,
|
5302delTG, 5303delGC, 5304delCT, 5305delTG, 5306delGA, 5307delAA, 5308delAT,
|
5309delTG, 5310delGA, 5311delAG, 5312delGC, 5313delCA, 5314delAT, 5315delTG,
|
5316delGA, 5317delAT, 5318delTT, 5319delTT, 5320delTT, 5321delTG, 5322delGA,
|
5323delAA, 5324delAG, 5325delGT, 5126delTC, 5327delCA, 5328delAG, 5329delGA,
|
5330delAG, 5331delGG, 5332delGA, 5333delAG, 5334delGA, 5335delAT, 5336delTG,
|
5337delGT, 5338delTG, 5339delGG, 5340delGT, 5341delTC, 5342delCA, 5343delAA,
|
5344delAT, 5345delTG, 5346delGG, 5347delGA, 5348delAA, 5349delAG, 5350delGA,
|
5351delAA, 5352delAA, 5353delAC, 5354delCC, 5355delCA, 5356delAC, 5357delCC,
|
5358delCA, 5359delAA, 5360delAG, 5361delGG, 5362delGT, 5363delTC, 5364delCC,
|
5365delCA, 5366delAA, 5367delAA, 5368delAG, 5369delGC, 5370delCG, 5371delGA,
|
5372delAG, 5373delGC, 5374delCA, 5375delAA, 5376delAG, 5377delGA, 5378delAG,
|
5379delGA, 5380delAA, 5381delAT, 5382delTC, 5383delCC, 5384delCC, 5385delCA,
|
5386delAG, 5387delGG, 5388delGA, 5389delAC, 5390delCA, 5391delAG, 5392delGA,
|
5393delAA, 5394delAA, 5395delAG, 5396delGA, 5397delAT, 5398delTC, 5399delCT,
|
5400delTT, 5401delTC, 5402delCA, 5403delAG, 5404delGG, 5405delGG, 5406delGG,
|
5407delGG, 5408delGC, 5409delCT, 5410delTA, 5411delAG, 5412delGA, 5413delAA,
|
5414delAA, 5415delAT, 5416delTC, 5417delCT, 5418delTG, 5419delGT, 5420delTT,
|
5421delTG, 5422delGC, 5423delCT, 5424delTA, 5425delAT, 5426delTG, 5427delGG,
|
5428delGG, 5429delGC, 5430delCC, 5431delCC, 5432delCT, 5433delTT, 5434delTC,
|
5435delCA, 5436delAC, 5437delCC, 5438delCA, 5439delAA, 5440delAC, 5441delCA,
|
5442delAT, 5443delTG, 5444delGC, 5445delCC, 5446delCC, 5447delCA, 5448delAC,
|
5449delCA, 5450delAG, 5451delGA, 5452delAT, 5453delTC, 5454delCA, 5455delAA,
|
5456delAC, 5457delCT, 5458delTG, 5459delGG, 5460delGA, 5461delAA, 5462delAT,
|
5463delTG, 5464delGG, 5465delGA, 5466delAT, 5467delTG, 5468delGG, 5469delGT,
|
5470delTA, 5471delAC, 5472delCA, 5473delAG, 5474delGC, 5475delCT, 5476delTG,
|
5477delGT, 5478delTG, 5479delGT, 5480delTG, 5481delGG, 5482delGT, 5483delTG,
|
5484delGC, 5485delCT, 5486delTT, 5487delTC, 5488delCT, 5489delTG, 5490delGT,
|
5491delTG, 5492delGG, 5493delGT, 5494delTG, 5495delGA, 5496delAA, 5497delAG,
|
5498delGG, 5499delGA, 5500delAG, 5501delGC, 5502delCT, 5503delTT, 5504delTT,
|
5505delTC, 5506delCA, 5507delAT, 5508delTC, 5509delCA, 5510delAT, 5511delTT,
|
5512delTC, 5513delCA, 5514delAC, 5515delCC, 5516delCC, 5517delCT, 5518delTT,
|
5519delTG, 5520delGG, 5521delGC, 5522delCA, 5523delAC, 5524delCA, 5525delAG,
|
5526delGG, 5527delGT, 5528delTG, 5529delGT, 5530delTC, 5531delCC, 5532delCA,
|
5533delAC, 5534delCC, 5535delCC, 5536delCA, 5537delAA, 5538delAT, 5539delTT,
|
5540delTG, 5541delGT, 5542delTG, 5543delGG, 5544delGT, 5545delTT, 5546delTG,
|
5547delGT, 5548delTG, 5549delGC, 5550delCA, 5551delAG, 5552delGC, 5553delCC,
|
5554delCA, 5555delAG, 5556delGA, 5557delAT, 5558delTG, 5559delGC, 5560delCC,
|
5561delCT, 5562delTG, 5563delGG, 5564delGA, 5565delAC, 5566delCA, 5567delAG,
|
5568delGA, 5569delAG, 5570delGG, 5571delGA, 5572delAC, 5573delCA, 5574delAA,
|
5575delAT, 5576delTG, 5577delGG, 5578delGC, 5579delCT, 5580delTT, 5581delTC,
|
5582delCC, 5583delCA, 5584delAT, 5585delTG, 5586delGC, 5587delCA, 5588delAA,
|
5589delAT, 5590delTT, 5591delTG, 5592delGG, 5593delGG, 5594delGC, 5595delCA,
|
5596delAG, 5597delGA, 5598delAT, 5599delTG, 5600delGT, 5601delTG, 5602delGT,
|
5603delTG, 5635delTG, 5654delCC, 5660delCC, 5708delCT.
|
|
[0229]
21
TABLE 11
|
|
|
List of One Base Insertions
|
(N = A, T, G, or C)
|
|
|
122insN, 123insN, 124insN, 125insN, 126insN, 127insN, 128insN, 129insN, 130insN, 131insN,
|
132insN, 133insN, 134insN, 135insN, 136insN, 137insN, 138insN, 139insN, 140insN, 141insN,
|
142insN, 143insN, 144insN, 145insN, 146insN, 147insN, 148insN, 149insN, 150insN, 151insN,
|
152insN, 153insN, 154insN, 155insN, 156insN, 157insN, 158insN, 159insN, 160insN, 161insN,
|
162insN, 163insN, 164insN, 165insN, 166insN, 167insN, 168insN, 169insN, 170insN, 171insN,
|
172insN, 173insN, 174insN, 175insN, 176insN, 177insN, 178insN, 179insN, 180insN, 181insN,
|
182insN, 183insN, 184insN, 185insN, 186insN, 187insN, 188insN, 189insN, 190insN, 191insN,
|
192insN, 193insN, 194insN, 195insN, 196insN, 197insN, 198insN, 199insN, 200insN, 201insN,
|
202insN, 203insN, 204insN, 205insN, 206insN, 207insN, 208insN, 209insN, 210insN, 211insN,
|
212insN, 213insN, 214insN, 215insN, 216insN, 217insN, 218insN, 219insN, 220insN, 221insN,
|
222insN, 223insN, 224insN, 225insN, 226insN, 227insN, 228insN, 229insN, 230insN, 231insN,
|
232insN, 233insN, 234insN, 235insN, 236insN, 237insN, 238insN, 239insN, 240insN, 241insN,
|
242insN, 243insN, 244insN, 245insN, 246insN, 247insN, 248insN, 249insN, 250insN, 251insN,
|
252insN, 253insN, 254insN, 255insN, 256insN, 257insN, 258insN, 259insN, 260insN, 261insN,
|
262insN, 263insN, 264insN, 265insN, 266insN, 267insN, 268insN, 269insN, 270insN, 271insN,
|
272insN, 273insN, 274insN, 275insN, 276insN, 277insN, 278insN, 279insN, 280insN, 281insN,
|
282insN, 283insN, 284insN, 285insN, 286insN, 287insN, 288insN, 289insN, 290insN, 291insN,
|
292insN, 293insN, 294insN, 295insN, 296insN, 297insN, 298insN, 299insN, 300insN, 301insN,
|
302insN, 303insN, 304insN, 305insN, 306insN, 307insN, 308insN, 309insN, 310insN, 311insN,
|
312insN, 313insN, 314insN, 315insN, 316insN, 317insN, 318insN, 319insN, 320insN, 321insN,
|
322insN, 323insN, 324insN, 325insN, 326insN, 327insN, 328insN, 329insN, 330insN, 331insN,
|
332insN, 333insN, 334insN, 335insN, 336insN, 337insN, 338insN, 339insN, 340insN, 341insN,
|
342insN, 343insN, 344insN, 345insN, 346insN, 347insN, 348insN, 349insN, 350insN, 351insN,
|
352insN, 353insN, 354insN, 355insN, 356insN, 357insN, 358insN, 359insN, 360insN, 361insN,
|
362insN, 363insN, 364insN, 365insN, 366insN, 367insN, 368insN, 369insN, 370insN, 371insN,
|
372insN, 373insN, 374insN, 375insN, 376insN, 377insN, 378insN, 379insN, 380insN, 381insN,
|
382insN, 383insN, 384insN, 385insN, 386insN, 387insN, 388insN, 389insN, 390insN, 391insN,
|
392insN, 393insN, 394insN, 395insN, 396insN, 397insN, 398insN, 399insN, 400insN, 401insN,
|
402insN, 403insN, 404insN, 405insN, 406insN, 407insN, 408insN, 409insN, 410insN, 411insN,
|
412insN, 413insN, 414insN, 415insN, 416insN, 417insN, 418insN, 419insN, 420insN, 421insN,
|
422insN, 423insN, 424insN, 425insN, 426insN, 427insN, 428insN, 429insN, 430insN, 431insN,
|
432insN, 433insN, 434insN, 435insN, 436insN, 437insN, 438insN, 439insN, 440insN, 441insN,
|
442insN, 443insN, 444insN, 445insN, 446insN, 447insN, 448insN, 449insN, 450insN, 451insN,
|
452insN, 453insN, 454insN, 455insN, 456insN, 457insN, 458insN, 459insN, 460insN, 461insN,
|
462insN, 463insN, 464insN, 465insN, 466insN, 467insN, 468insN, 469insN, 470insN, 471insN,
|
472insN, 473insN, 474insN, 475insN, 476insN, 477insN, 478insN, 479insN, 480insN, 481insN,
|
482insN, 483insN, 484insN, 485insN, 486insN, 487insN, 488insN, 489insN, 490insN, 491insN,
|
492insN, 493insN, 494insN, 495insN, 496insN, 497insN, 498insN, 499insN, 500insN, 501insN,
|
502insN, 503insN, 504insN, 505insN, 506insN, 507insN, 508insN, 509insN, 510insN, 511insN,
|
512insN, 513insN, 514insN, 515insN, 516insN, 517insN, 518insN, 519insN, 520insN, 521insN,
|
522insN, 523insN, 524insN, 525insN, 526insN, 527insN, 528insN, 529insN, 530insN, 531insN,
|
532insN, 533insN, 534insN, 535insN, 536insN, 537insN, 538insN, 539insN, 540insN, 541insN,
|
542insN, 543insN, 544insN, 545insN, 546insN, 547insN, 548insN, 549insN, 550insN, 551insN,
|
552insN, 553insN, 554insN, 555insN, 556insN, 557insN, 558insN, 559insN, 560insN, 561insN,
|
562insN, 563insN, 564insN, 565insN, 566insN, 567insN, 568insN, 569insN, 570insN, 571insN,
|
572insN, 573insN, 574insN, 575insN, 576insN, 577insN, 578insN, 579insN, 580insN, 581insN,
|
582insN, 583insN, 584insN, 585insN, 586insN, 587insN, 588insN, 589insN, 590insN, 591insN,
|
592insN, 593insN, 594insN, 595insN, 596insN, 597insN, 598insN, 599insN, 600insN, 601insN,
|
602insN, 603insN, 604insN, 605insN, 606insN, 607insN, 608insN, 609insN, 610insN, 611insN,
|
612insN, 613insN, 614insN, 615insN, 616insN, 617insN, 618insN, 619insN, 620insN, 621insN,
|
622insN, 623insN, 624insN, 625insN, 626insN, 627insN, 628insN, 629insN, 630insN, 631insN,
|
632insN, 633insN, 634insN, 635insN, 636insN, 637insN, 638insN, 639insN, 640insN, 641insN,
|
642insN, 643insN, 644insN, 645insN, 646insN, 647insN, 648insN, 649insN, 650insN, 651insN,
|
652insN, 653insN, 654insN, 655insN, 656insN, 657insN, 658insN, 659insN, 660insN, 661insN,
|
662insN, 663insN, 664insN, 665insN, 666insN, 667insN, 668insN, 669insN, 670insN, 671insN,
|
672insN, 673insN, 674insN, 675insN, 676insN, 677insN, 678insN, 679insN, 680insN, 681insN,
|
682insN, 683insN, 684insN, 685insN, 686insN, 687insN, 688insN, 689insN, 690insN, 691insN,
|
692insN, 693insN, 694insN, 695insN, 696insN, 697insN, 698insN, 699insN, 700insN, 701insN,
|
702insN, 703insN, 704insN, 705insN, 706insN, 707insN, 708insN, 709insN, 710insN, 711insN,
|
712insN, 713insN, 714insN, 715insN, 716insN, 717insN, 718insN, 719insN, 720insN, 721insN,
|
722insN, 723insN, 724insN, 725insN, 726insN, 727insN, 728insN, 729insN, 730insN, 731insN,
|
732insN, 733insN, 734insN, 735insN, 736insN, 737insN, 738insN, 739insN, 740insN, 741insN,
|
742insN, 743insN, 744insN, 745insN, 746insN, 747insN, 748insN, 749insN, 750insN, 751insN,
|
752insN, 753insN, 754insN, 755insN, 756insN, 757insN, 758insN, 759insN, 760insN, 761insN,
|
762insN, 763insN, 764insN, 765insN, 766insN, 767insN, 768insN, 769insN, 770insN, 771insN,
|
772insN, 773insN, 774insN, 775insN, 776insN, 777insN, 778insN, 779insN, 780insN, 781insN,
|
782insN, 783insN, 784insN, 785insN, 786insN, 787insN, 788insN, 789insN, 790insN, 791insN,
|
792insN, 793insN, 794insN, 795insN, 796insN, 797insN, 798insN, 799insN, 800insN, 801insN,
|
802insN, 803insN, 804insN, 805insN, 806insN, 807insN, 808insN, 809insN, 810insN, 811insN,
|
812insN, 813insN, 814insN, 815insN, 816insN, 817insN, 818insN, 819insN, 820insN, 821insN,
|
822insN, 823insN, 824insN, 825insN, 826insN, 827insN, 828insN, 829insN, 830insN, 831insN,
|
832insN, 833insN, 834insN, 835insN, 836insN, 837insN, 838insN, 839insN, 840insN, 841insN,
|
842insN, 843insN, 844insN, 845insN, 846insN, 847insN, 848insN, 849insN, 850insN, 851insN,
|
852insN, 853insN, 854insN, 855insN, 856insN, 857insN, 858insN, 859insN, 860insN, 861insN,
|
862insN, 863insN, 864insN, 865insN, 866insN, 867insN, 868insN, 869insN, 870insN, 871insN,
|
872insN, 873insN, 874insN, 875insN, 876insN, 877insN, 878insN, 879insN, 880insN, 881insN,
|
882insN, 883insN, 884insN, 885insN, 886insN, 887insN, 888insN, 889insN, 890insN, 891insN,
|
892insN, 893insN, 894insN, 895insN, 896insN, 897insN, 898insN, 899insN, 900insN, 901insN,
|
902insN, 903insN, 904insN, 905insN, 906insN, 907insN, 908insN, 909insN, 910insN, 911insN,
|
912insN, 913insN, 914insN, 915insN, 916insN, 917insN, 918insN, 919insN, 920insN, 921insN,
|
922insN, 923insN, 924insN, 925insN, 926insN, 927insN, 928insN, 929insN, 930insN, 931insN,
|
932insN, 933insN, 934insN, 935insN, 936insN, 937insN, 938insN, 939insN, 940insN, 941insN,
|
942insN, 943insN, 944insN, 945insN, 946insN, 947insN, 948insN, 949insN, 950insN, 951insN,
|
952insN, 953insN, 954insN, 955insN, 956insN, 957insN, 958insN, 959insN, 960insN, 961insN,
|
962insN, 963insN, 964insN, 965insN, 966insN, 967insN, 968insN, 969insN, 970insN, 971insN,
|
972insN, 973insN, 974insN, 975insN, 976insN, 977insN, 978insN, 979insN, 980insN, 981insN,
|
982insN, 983insN, 984insN, 985insN, 986insN, 987insN, 988insN, 989insN, 990insN, 991insN,
|
992insN, 993insN, 994insN, 995insN, 996insN, 997insN, 998insN, 999insN, 1000insN,
|
1001insN, 1002insN, 1003insN, 1004insN, 1005insN, 1006insN, 1007insN, 1008insN,
|
1009insN, 1010insN, 1011insN, 1012insN, 1013insN, 1014insN, 1015insN, 1016insN,
|
1017insN, 1018insN, 1019insN, 1020insN, 1021insN, 1022insN, 1023insN, 1024insN,
|
1025insN, 1026insN, 1027insN, 1028insN, 1029insN, 1030insN, 1031insN, 1032insN,
|
1033insN, 1034insN, 1035insN, 1036insN, 1037insN, 1038insN, 1039insN, 1040insN,
|
1041insN, 1042insN, 1043insN, 1044insN, 1045insN, 1046insN, 1047insN, 1048insN,
|
1049insN, 1050insN, 1051insN, 1052insN, 1053insN, 1054insN, 1055insN, 1056insN,
|
1057insN, 1058insN, 1059insN, 1060insN, 1061insN, 1062insN, 1063insN, 1064insN,
|
1065insN, 1066insN, 1067insN, 1068insN, 1069insN, 1070insN, 1071insN, 1072insN,
|
1073insN, 1074insN, 1075insN, 1076insN, 1077insN, 1078insN, 1079insN, 1080insN,
|
1081insN, 1082insN, 1083insN, 1084insN, 1085insN, 1086insN, 1087insN, 1088insN,
|
1089insN, 1090insN, 1091insN, 1092insN, 1093insN, 1094insN, 1095insN, 1096insN,
|
1097insN, 1098insN, 1099insN, 1100insN, 1101insN, 1102insN, 1103insN, 1104insN,
|
1105insN, 1106insN, 1107insN, 1108insN, 1109insN, 1110insN, 1111insN, 1112insN,
|
1113insN, 1114insN, 1115insN, 1116insN, 1117insN, 1118insN, 1119insN, 1120insN,
|
1121insN, 1122insN, 1123insN, 1124insN, 1125insN, 1126insN, 1127insN, 1128insN,
|
1129insN, 1130insN, 1131insN, 1132insN, 1133insN, 1134insN, 1135insN, 1136insN,
|
1137insN, 1138insN, 1139insN, 1140insN, 1141insN, 1142insN, 1143insN, 1144insN,
|
1145insN, 1146insN, 1147insN, 1148insN, 1149insN, 1150insN, 1151insN, 1152insN,
|
1153insN, 1154insN, 1155insN, 1156insN, 1157insN, 1158insN, 1159insN, 1160insN,
|
1161insN, 1162insN, 1163insN, 1164insN, 1165insN, 1166insN, 1167insN, 1168insN,
|
1169insN, 1170insN, 1171insN, 1172insN, 1173insN, 1174insN, 1175insN, 1176insN,
|
1177insN, 1178insN, 1179insN, 1180insN, 1181insN, 1182insN, 1183insN, 1184insN,
|
1185insN, 1186insN, 1187insN, 1188insN, 1189insN, 1190insN, 1191insN, 1192insN,
|
1193insN, 1194insN, 1195insN, 1196insN, 1197insN, 1198insN, 1199insN, 1200insN,
|
1201insN, 1202insN, 1203insN, 1204insN, 1205insN, 1206insN, 1207insN, 1208insN,
|
1209insN, 1210insN, 1211insN, 1212insN, 1213insN, 1214insN, 1215insN, 1216insN,
|
1217insN, 1218insN, 1219insN, 1220insN, 1221insN, 1222insN, 1223insN, 1224insN,
|
1225insN, 1226insN, 1227insN, 1228insN, 1229insN, 1230insN, 1231insN, 1232insN,
|
1233insN, 1234insN, 1235insN, 1236insN, 1237insN, 1238insN, 1239insN, 1240insN,
|
1241insN, 1242insN, 1243insN, 1244insN, 1245insN, 1246insN, 1247insN, 1248insN,
|
1249insN, 1250insN, 1251insN, 1252insN, 1253insN, 1254insN, 1255insN, 1256insN,
|
1257insN, 1258insN, 1259insN, 1260insN, 1261insN, 1262insN, 1263insN, 1264insN,
|
1265insN, 1266insN, 1267insN, 1268insN, 1269insN, 1270insN, 1271insN, 1272insN,
|
1273insN, 1274insN, 1275insN, 1276insN, 1277insN, 1278insN, 1279insN, 1280insN,
|
1281insN, 1282insN, 1283insN, 1284insN, 1285insN, 1286insN, 1287insN, 1288insN,
|
1289insN, 1290insN, 1291insN, 1292insN, 1293insN, 1294insN, 1295insN, 1296insN,
|
1297insN, 1298insN, 1299insN, 1300insN, 1301insN, 1302insN, 1303insN, 1304insN,
|
1305insN, 1306insN, 1307insN, 1308insN, 1309insN, 1310insN, 1311insN, 1312insN,
|
1313insN, 1314insN, 1315insN, 1316insN, 1317insN, 1318insN, 1319insN, 1320insN,
|
1321insN, 1322insN, 1323insN, 1324insN, 1325insN, 1326insN, 1327insN, 1328insN,
|
1329insN, 1330insN, 1331insN, 1332insN, 1333insN, 1334insN, 1335insN, 1336insN,
|
1337insN, 1338insN, 1339insN, 1340insN, 1341insN, 1342insN, 1343insN, 1344insN,
|
1345insN, 1346insN, 1347insN, 1348insN, 1349insN, 1350insN, 1351insN, 1352insN,
|
1353insN, 1354insN, 1355insN, 1356insN, 1357insN, 1358insN, 1359insN, 1360insN,
|
1361insN, 1362insN, 1363insN, 1364insN, 1365insN, 1366insN, 1367insN, 1368insN,
|
1369insN, 1370insN, 1371insN, 1372insN, 1373insN, 1374insN, 1375insN, 1376insN,
|
1377insN, 1378insN, 1379insN, 1380insN, 1381insN, 1382insN, 1383insN, 1384insN,
|
1385insN, 1386insN, 1387insN, 1388insN, 1389insN, 1390insN, 1391insN, 1392insN,
|
1393insN, 1394insN, 1395insN, 1396insN, 1397insN, 1398insN, 1399insN, 1400insN,
|
1401insN, 1402insN, 1403insN, 1404insN, 1405insN, 1406insN, 1407insN, 1408insN,
|
1409insN, 1410insN, 1411insN, 1412insN, 1413insN, 1414insN, 1415insN, 1416insN,
|
1417insN, 1418insN, 1419insN, 1420insN, 1421insN, 1422insN, 1423insN, 1424insN,
|
1425insN, 1426insN, 1427insN, 1428insN, 1429insN, 1430insN, 1431insN, 1432insN,
|
1433insN, 1434insN, 1435insN, 1436insN, 1437insN, 1438insN, 1439insN, 1440insN,
|
1441insN, 1442insN, 1443insN, 1444insN, 1445insN, 1446insN, 1447insN, 1448insN,
|
1449insN, 1450insN, 1451insN, 1452insN, 1453insN, 1454insN, 1455insN, 1456insN,
|
1457insN, 1458insN, 1459insN, 1460insN, 1461insN, 1462insN, 1463insN, 1464insN,
|
1465insN, 1466insN, 1467insN, 1468insN, 1469insN, 1470insN, 1471insN, 1472insN,
|
1473insN, 1474insN, 1475insN, 1476insN, 1477insN, 1478insN, 1479insN, 1480insN,
|
1481insN, 1482insN, 1483insN, 1484insN, 1485insN, 1486insN, 1487insN, 1488insN,
|
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4401insN, 4402insN, 4403insN, 4404insN, 4405insN, 4406insN, 4407insN, 4408insN,
|
4409insN, 4410insN, 4411insN, 4412insN, 4413insN, 4414insN, 4415insN, 4416insN,
|
4417insN, 4418insN, 4419insN, 4420insN, 4421insN, 4422insN, 4423insN, 4424insN,
|
4425insN, 4426insN, 4427insN, 4428insN, 4429insN, 4430insN, 4431insN, 4432insN,
|
4433insN, 4434insN, 4435insN, 4436insN, 4437insN, 4438insN, 4439insN, 4440insN,
|
4441insN, 4442insN, 4443insN, 4444insN, 4445insN, 4446insN, 4447insN, 4448insN,
|
4449insN, 4450insN, 4451insN, 4452insN, 4453insN, 4454insN, 4455insN, 4456insN,
|
4457insN, 4458insN, 4459insN, 4460insN, 4461insN, 4462insN, 4463insN, 4464insN,
|
4465insN, 4466insN, 4467insN, 4468insN, 4469insN, 4470insN, 4471insN, 4472insN,
|
4473insN, 4474insN, 4475insN, 4476insN, 4477insN, 4478insN, 4479insN, 4480insN,
|
4481insN, 4482insN, 4483insN, 4484insN, 4485insN, 4486insN, 4487insN, 4488insN,
|
4489insN, 4490insN, 4491insN, 4492insN, 4493insN, 4494insN, 4495insN, 4496insN,
|
4497insN, 4498insN, 4499insN, 4500insN, 4501insN, 4502insN, 4503insN, 4504insN,
|
4505insN, 4506insN, 4507insN, 4508insN, 4509insN, 4510insN, 4511insN, 4512insN,
|
4513insN, 4514insN, 4515insN, 4516insN, 4517insN, 4518insN, 4519insN, 4520insN,
|
4521insN, 4522insN, 4523insN, 4524insN, 4525insN, 4526insN, 4527insN, 4528insN,
|
4529insN, 4530insN, 4531insN, 4532insN, 4533insN, 4534insN, 4535insN, 4536insN,
|
4537insN, 4538insN, 4539insN, 4540insN, 4541insN, 4542insN, 4543insN, 4544insN,
|
4545insN, 4546insN, 4547insN, 4548insN, 4549insN, 4550insN, 4551insN, 4552insN,
|
4553insN, 4554insN, 4555insN, 4556insN, 4557insN, 4558insN, 4559insN, 4560insN,
|
4561insN, 4562insN, 4563insN, 4564insN, 4565insN, 4566insN, 4567insN, 4568insN,
|
4569insN, 4570insN, 4571insN, 4572insN, 4573insN, 4574insN, 4575insN, 4576insN,
|
4577insN, 4578insN, 4579insN, 4580insN, 4581insN, 4582insN, 4583insN, 4584insN,
|
4585insN, 4586insN, 4587insN, 4588insN, 4589insN, 4590insN, 4591insN, 4592insN,
|
4593insN, 4594insN, 4595insN, 4596insN, 4597insN, 4598insN, 4599insN, 4600insN,
|
4601insN, 4602insN, 4603insN, 4604insN, 4605insN, 4606insN, 4607insN, 4608insN,
|
4609insN, 4610insN, 4611insN, 4612insN, 4613insN, 4614insN, 4615insN, 4616insN,
|
4617insN, 4618insN, 4619insN, 4620insN, 4621insN, 4622insN, 4623insN, 4624insN,
|
4625insN, 4626insN, 4627insN, 4628insN, 4629insN, 4630insN, 4631insN, 4632insN,
|
4633insN, 4634insN, 4635insN, 4636insN, 4637insN, 4638insN, 4639insN, 4640insN,
|
4641insN, 4642insN, 4643insN, 4644insN, 4645insN, 4646insN, 4647insN, 4648insN,
|
4649insN, 4650insN, 4651insN, 4652insN, 4653insN, 4654insN, 4655insN, 4656insN,
|
4657insN, 4658insN, 4659insN, 4660insN, 4661insN, 4662insN, 4663insN, 4664insN,
|
4665insN, 4666insN, 4667insN, 4668insN, 4669insN, 4670insN, 4671insN, 4672insN,
|
4673insN, 4674insN, 4675insN, 4676insN, 4677insN, 4678insN, 4679insN, 4680insN,
|
4681insN, 4682insN, 4683insN, 4684insN, 4685insN, 4686insN, 4687insN, 4688insN,
|
4689insN, 4690insN, 4691insN, 4692insN, 4693insN, 4694insN, 4695insN, 4696insN,
|
4697insN, 4698insN, 4699insN, 4700insN, 4701insN, 4702insN, 4703insN, 4704insN,
|
4705insN, 4706insN, 4707insN, 4708insN, 4709insN, 4710insN, 4711insN, 4712insN,
|
4713insN, 4714insN, 4715insN, 4716insN, 4717insN, 4718insN, 4719insN, 4720insN,
|
4721insN, 4722insN, 4723insN, 4724insN, 4725insN, 4726insN, 4727insN, 4728insN,
|
4729insN, 4730insN, 4731insN, 4732insN, 4733insN, 4734insN, 4735insN, 4736insN,
|
4737insN, 4738insN, 4739insN, 4740insN, 4741insN, 4742insN, 4743insN, 4744insN,
|
4745insN, 4746insN, 4747insN, 4748insN, 4749insN, 4750insN, 4751insN, 4752insN,
|
4753insN, 4754insN, 4755insN, 4756insN, 4757insN, 4758insN, 4759insN, 4760insN,
|
4761insN, 4762insN, 4763insN, 4764insN, 4765insN, 4766insN, 4767insN, 4768insN,
|
4769insN, 4770insN, 4771insN, 4772insN, 4773insN, 4774insN, 4775insN, 4776insN,
|
4777insN, 4778insN, 4779insN, 4780insN, 4781insN, 4782insN, 4783insN, 4784insN,
|
4785insN, 4786insN, 4787insN, 4788insN, 4789insN, 4790insN, 4791insN, 4792insN,
|
4793insN, 4794insN, 4795insN, 4796insN, 4797insN, 4798insN, 4799insN, 4800insN,
|
4801insN, 4802insN, 4803insN, 4804insN, 4805insN, 4806insN, 4807insN, 4808insN,
|
4809insN, 4810insN, 4811insN, 4812insN, 4813insN, 4814insN, 4815insN, 4816insN,
|
4817insN, 4818insN, 4819insN, 4820insN, 4821insN, 4822insN, 4823insN, 4824insN,
|
4825insN, 4826insN, 4827insN, 4828insN, 4829insN, 4830insN, 4831insN, 4832insN,
|
4833insN, 4834insN, 4835insN, 4836insN, 4837insN, 4838insN, 4839insN, 4840insN,
|
4841insN, 4842insN, 4843insN, 4844insN, 4845insN, 4846insN, 4847insN, 4848insN,
|
4849insN, 4850insN, 4851insN, 4852insN, 4853insN, 4854insN, 4855insN, 4856insN,
|
4857insN, 4858insN, 4859insN, 4860insN, 4861insN, 4862insN, 4863insN, 4864insN,
|
4865insN, 4866insN, 4867insN, 4868insN, 4869insN, 4870insN, 4871insN, 4872insN,
|
4873insN, 4874insN, 4875insN, 4876insN, 4877insN, 4878insN, 4879insN, 4880insN,
|
4881insN, 4882insN, 4883insN, 4884insN, 4885insN, 4886insN, 4887insN, 4888insN,
|
4889insN, 4890insN, 4891insN, 4892insN, 4893insN, 4894insN, 4895insN, 4896insN,
|
4897insN, 4898insN, 4899insN, 4900insN, 4901insN, 4902insN, 4903insN, 4904insN,
|
4905insN, 4906insN, 4907insN, 4908insN, 4909insN, 4910insN, 4911insN, 4912insN,
|
4913insN, 4914insN, 4915insN, 4916insN, 4917insN, 4918insN, 4919insN, 4920insN,
|
4921insN, 4922insN, 4923insN, 4924insN, 4925insN, 4926insN, 4927insN, 4928insN,
|
4929insN, 4930insN, 4931insN, 4932insN, 4933insN, 4934insN, 4935insN, 4936insN,
|
4937insN, 4938insN, 4939insN, 4940insN, 4941insN, 4942insN, 4943insN, 4944insN,
|
4945insN, 4946insN, 4947insN, 4948insN, 4949insN, 4950insN, 4951insN, 4952insN,
|
4953insN, 4954insN, 4955insN, 4956insN, 4957insN, 4958insN, 4959insN, 4960insN,
|
4961insN, 4962insN, 4963insN, 4964insN, 4965insN, 4966insN, 4967insN, 4968insN,
|
4969insN, 4970insN, 4971insN, 4972insN, 4973insN, 4974insN, 4975insN, 4976insN,
|
4977insN, 4978insN, 4979insN, 4980insN, 4981insN, 4982insN, 4983insN, 4984insN,
|
4985insN, 4986insN, 4987insN, 4988insN, 4989insN, 4990insN, 4991insN, 4992insN,
|
4993insN, 4994insN, 4995insN, 4996insN, 4997insN, 4998insN, 4999insN, 5000insN,
|
5001insN, 5002insN, 5003insN, 5004insN, 5005insN, 5006insN, 5007insN, 5008insN,
|
5009insN, 5010insN, 5011insN, 5012insN, 5013insN, 5014insN, 5015insN, 5016insN,
|
5017insN, 5018insN, 5019insN, 5020insN, 5021insN, 5022insN, 5023insN, 5024insN,
|
5025insN, 5026insN, 5027insN, 5028insN, 5029insN, 5030insN, 5031insN, 5032insN,
|
5033insN, 5034insN, 5035insN, 5036insN, 5037insN, 5038insN, 5039insN, 5040insN,
|
5041insN, 5042insN, 5043insN, 5044insN, 5045insN, 5046insN, 5047insN, 5048insN,
|
5049insN, 5050insN, 5051insN, 5052insN, 5053insN, 5054insN, 5055insN, 5056insN,
|
5057insN, 5058insN, 5059insN, 5060insN, 5061insN, 5062insN, 5063insN, 5064insN,
|
5065insN, 5066insN, 5067insN, 5068insN, 5069insN, 5070insN, 5071insN, 5072insN,
|
5073insN, 5074insN, 5075insN, 5076insN, 5077insN, 5078insN, 5079insN, 5080insN,
|
5081insN, 5082insN, 5083insN, 5084insN, 5085insN, 5086insN, 5087insN, 5088insN,
|
5089insN, 5090insN, 5091insN, 5092insN, 5093insN, 5094insN, 5095insN, 5096insN,
|
5097insN, 5098insN, 5099insN, 5100insN, 5101insN, 5102insN, 5103insN, 5104insN,
|
5105insN, 5106insN, 5107insN, 5108insN, 5109insN, 5110insN, 5111insN, 5112insN,
|
5113insN, 5114insN, 5115insN, 5116insN, 5117insN, 5118insN, 5119insN, 5120insN,
|
5121insN, 5122insN, 5123insN, 5124insN, 5125insN, 5126insN, 5127insN, 5128insN,
|
5129insN, 5130insN, 5131insN, 5132insN, 5133insN, 5134insN, 5135insN, 5136insN,
|
5137insN, 5138insN, 5139insN, 5140insN, 5141insN, 5142insN, 5143insN, 5144insN,
|
5145insN, 5146insN, 5147insN, 5148insN, 5149insN, 5150insN, 5151insN, 5152insN,
|
5153insN, 5154insN, 5155insN, 5156insN, 5157insN, 5158insN, 5159insN, 5160insN,
|
5161insN, 5162insN, 5163insN, 5164insN, 5165insN, 5166insN, 5167insN, 5168insN,
|
5169insN, 5170insN, 5171insN, 5172insN, 5173insN, 5174insN, 5175insN, 5176insN,
|
5177insN, 5178insN, 5179insN, 5180insN, 5181insN, 5182insN, 5183insN, 5184insN,
|
5185insN, 5186insN, 5187insN, 5188insN, 5189insN, 5190insN, 5191insN, 5192insN,
|
5193insN, 5194insN, 5195insN, 5196insN, 5197insN, 5198insN, 5199insN, 5200insN,
|
5201insN, 5202insN, 5203insN, 5204insN, 5205insN, 5206insN, 5207insN, 5208insN,
|
5209insN, 5210insN, 5211insN, 5212insN, 5213insN, 5214insN, 5215insN, 5216insN,
|
5217insN, 5218insN, 5219insN, 5220insN, 5221insN, 5222insN, 5223insN, 5224insN,
|
5225insN, 5226insN, 5227insN, 5228insN, 5229insN, 5230insN, 5231insN, 5232insN,
|
5233insN, 5234insN, 5235insN, 5236insN, 5237insN, 5238insN, 5239insN, 5240insN,
|
5241insN, 5242insN, 5243insN, 5244insN, 5245insN, 5246insN, 5247insN, 5248insN,
|
5249insN, 5250insN, 5251insN, 5252insN, 5253insN, 5254insN, 5255insN, 5256insN,
|
5257insN, 5258insN, 5259insN, 5260insN, 5261insN, 5262insN, 5263insN, 5264insN,
|
5265insN, 5266insN, 5267insN, 5268insN, 5269insN, 5270insN, 5271insN, 5272insN,
|
5273insN, 5274insN, 5275insN, 5276insN, 5277insN, 5278insN, 5279insN, 5280insN,
|
5281insN, 5282insN, 5283insN, 5284insN, 5285insN, 5286insN, 5287insN, 5288insN,
|
5289insN, 5290insN, 5291insN, 5292insN, 5293insN, 5294insN, 5295insN, 5296insN,
|
5297insN, 5298insN, 5299insN, 5300insN, 5301insN, 5302insN, 5303insN, 5304insN,
|
5305insN, 5306insN, 5307insN, 5308insN, 5309insN, 5310insN, 5311insN, 5312insN,
|
5313insN, 5314insN, 5315insN, 5316insN, 5317insN, 5318insN, 5319insN, 5320insN,
|
5321insN, 5322insN, 5323insN, 5324insN, 5325insN, 5326insN, 5327insN, 5328insN,
|
5329insN, 5330insN, 5331insN, 5332insN, 5333insN, 5334insN, 5335insN, 5336insN,
|
5337insN, 5338insN, 5339insN, 5340insN, 5341insN, 5342insN, 5343insN, 5344insN,
|
5345insN, 5346insN, 5347insN, 5348insN, 5349insN, 5350insN, 5351insN, 5352insN,
|
5353insN, 5354insN, 5355insN, 5356insN, 5357insN, 5358insN, 5359insN, 5360insN,
|
5361insN, 5362insN, 5363insN, 5364insN, 5365insN, 5366insN, 5367insN, 5368insN,
|
5369insN, 5370insN, 5371insN, 5372insN, 5373insN, 5374insN, 5375insN, 5376insN,
|
5377insN, 5378insN, 5379insN, 5380insN, 5381insN, 5382insN, 5383insN, 5384insN,
|
5385insN, 5386insN, 5387insN, 5388insN, 5389insN, 5390insN, 5391insN, 5392insN,
|
5393insN, 5394insN, 5395insN, 5396insN, 5397insN, 5398insN, 5399insN, 5400insN,
|
5401insN, 5402insN, 5403insN, 5404insN, 5405insN, 5406insN, 5407insN, 5408insN,
|
5409insN, 5410insN, 5411insN, 5412insN, 5413insN, 5414insN, 5415insN, 5416insN,
|
5417insN, 5418insN, 5419insN, 5420insN, 5421insN, 5422insN, 5423insN, 5424insN,
|
5425insN, 5426insN, 5427insN, 5428insN, 5429insN, 5430insN, 5431insN, 5432insN,
|
5433insN, 5434insN, 5435insN, 5436insN, 5437insN, 5438insN, 5439insN, 5440insN,
|
5441insN, 5442insN, 5443insN, 5444insN, 5445insN, 5446insN, 5447insN, 5448insN,
|
5449insN, 5450insN, 5451insN, 5452insN, 5453insN, 5454insN, 5455insN, 5456insN,
|
5457insN, 5458insN, 5459insN, 5460insN, 5461insN, 5462insN, 5463insN, 5464insN,
|
5465insN, 5466insN, 5467insN, 5468insN, 5469insN, 5470insN, 5471insN, 5472insN,
|
5473insN, 5474insN, 5475insN, 5476insN, 5477insN, 5478insN, 5479insN, 5480insN,
|
5481insN, 5482insN, 5483insN, 5484insN, 5485insN, 5486insN, 5487insN, 5488insN,
|
5489insN, 5490insN, 5491insN, 5492insN, 5493insN, 5494insN, 5495insN, 5496insN,
|
5497insN, 5498insN, 5499insN, 5500insN, 5501insN, 5502insN, 5503insN, 5504insN,
|
5505insN, 5506insN, 5507insN, 5508insN, 5509insN, 5510insN, 5511insN, 5512insN,
|
5513insN, 5514insN, 5515insN, 5516insN, 5517insN, 5518insN, 5519insN, 5520insN,
|
5521insN, 5522insN, 5523insN, 5524insN, 5525insN, 5526insN, 5527insN, 5528insN,
|
5529insN, 5530insN, 5531insN, 5532insN, 5533insN, 5534insN, 5535insN, 5536insN,
|
5537insN, 5538insN, 5539insN, 5540insN, 5541insN, 5542insN, 5543insN, 5544insN,
|
5545insN, 5546insN, 5547insN, 5548insN, 5549insN, 5550insN, 5551insN, 5552insN,
|
5553insN, 5554insN, 5555insN, 5556insN, 5557insN, 5558insN, 5559insN, 5560insN,
|
5561insN, 5562insN, 5563insN, 5564insN, 5565insN, 5566insN, 5567insN, 5568insN,
|
5569insN, 5570insN, 5571insN, 5572insN, 5573insN, 5574insN, 5575insN, 5576insN,
|
5577insN, 5578insN, 5579insN, 5580insN, 5581insN, 5582insN, 5583insN, 5584insN,
|
5585insN, 5586insN, 5587insN, 5588insN, 5589insN, 5590insN, 5591insN, 5592insN,
|
5593insN, 5594insN, 5595insN, 5596insN, 5597insN, 5598insN, 5599insN, 5600insN,
|
5601insN, 5602insN, 5628insN, 5629insN, 5652insN, 5653insN, 5658insN, 5659insN,
|
5676insN, 5677insN, 5706insN, 5707insN.
|
|
[0230]
22
TABLE 12
|
|
|
List of Two Base Insertions
|
(NN = AA, AT, AG, AC, TA, TT, TG, TC, GA, GT, GG, GC, CA, CT, CG, or CC)
|
|
|
122insNN, 123insNN, 124insNN, 125insNN, 126insNN, 127insNN, 128insNN, 129insNN,
|
130insNN, 131insNN, 132insNN, 133insNN, 134insNN, 135insNN, 136insNN, 137insNN,
|
138insNN, 139insNN, 140insNN, 141insNN, 142insNN, 143insNN, 144insNN, 145insNN,
|
146insNN, 147insNN, 148insNN, 149insNN, 150insNN, 151insNN, 152insNN, 153insNN,
|
154insNN, 155insNN, 156insNN, 157insNN, 158insNN, 159insNN, 160insNN, 161insNN,
|
162insNN, 163insNN, 164insNN, 165insNN, 166insNN, 167insNN, 168insNN, 169insNN,
|
170insNN, 171insNN, 172insNN, 173insNN, 174insNN, 175insNN, 176insNN, 177insNN,
|
178insNN, 179insNN, 180insNN, 181insNN, 182insNN, 183insNN, 184insNN, 185insNN,
|
186insNN, 187insNN, 188insNN, 189insNN, 190insNN, 191insNN, 192insNN, 193insNN,
|
194insNN, 195insNN, 196insNN, 197insNN, 198insNN, 199insNN, 200insNN, 201insNN,
|
202insNN, 203insNN, 204insNN, 205insNN, 206insNN, 207insNN, 208insNN, 209insNN,
|
210insNN, 211insNN, 212insNN, 213insNN, 214insNN, 215insNN, 216insNN, 217insNN,
|
218insNN, 219insNN, 220insNN, 221insNN, 222insNN, 223insNN, 224insNN, 225insNN,
|
226insNN, 227insNN, 228insNN, 229insNN, 230insNN, 231insNN, 232insNN, 233insNN,
|
234insNN, 235insNN, 236insNN, 237insNN, 238insNN, 239insNN, 240insNN, 241insNN,
|
242insNN, 243insNN, 244insNN, 245insNN, 246insNN, 247insNN, 248insNN, 249insNN,
|
250insNN, 251insNN, 252insNN, 253insNN, 254insNN, 255insNN, 256insNN, 257insNN,
|
258insNN, 259insNN, 260insNN, 261insNN, 262insNN, 263insNN, 264insNN, 265insNN,
|
266insNN, 267insNN, 268insNN, 269insNN, 270insNN, 271insNN, 272insNN, 273insNN,
|
274insNN, 275insNN, 276insNN, 277insNN, 278insNN, 279insNN, 280insNN, 281insNN,
|
282insNN, 283insNN, 284insNN, 285insNN, 286insNN, 287insNN, 288insNN, 289insNN,
|
290insNN, 291insNN, 292insNN, 293insNN, 294insNN, 295insNN, 296insNN, 297insNN,
|
298insNN, 299insNN, 300insNN, 301insNN, 302insNN, 303insNN, 304insNN, 305insNN,
|
306insNN, 307insNN, 308insNN, 309insNN, 310insNN, 311insNN, 312insNN, 313insNN,
|
314insNN, 315insNN, 316insNN, 317insNN, 318insNN, 319insNN, 320insNN, 321insNN,
|
322insNN, 323insNN, 324insNN, 325insNN, 326insNN, 327insNN, 328insNN, 329insNN,
|
330insNN, 331insNN, 332insNN, 333insNN, 334insNN, 335insNN, 336insNN, 337insNN,
|
338insNN, 339insNN, 340insNN, 341insNN, 342insNN, 343insNN, 344insNN, 345insNN,
|
346insNN, 347insNN, 348insNN, 349insNN, 350insNN, 351insNN, 352insNN, 353insNN,
|
354insNN, 355insNN, 356insNN, 357insNN, 358insNN, 359insNN, 360insNN, 361insNN,
|
362insNN, 363insNN, 364insNN, 365insNN, 366insNN, 367insNN, 368insNN, 369insNN,
|
370insNN, 371insNN, 372insNN, 373insNN, 374insNN, 375insNN, 376insNN, 377insNN,
|
378insNN, 379insNN, 380insNN, 381insNN, 382insNN, 383insNN, 384insNN, 385insNN,
|
386insNN, 387insNN, 388insNN, 389insNN, 390insNN, 391insNN, 392insNN, 393insNN,
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1884insNN, 1885insNN, 1886insNN, 1887insNN, 1888insNN, 1889insNN, 1890insNN,
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1891insNN, 1892insNN, 1893insNN, 1894insNN, 1895insNN, 1896insNN, 1897insNN,
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1898insNN, 1899insNN, 1900insNN, 1901insNN, 1902insNN, 1903insNN, 1904insNN,
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1905insNN, 1906insNN, 1907insNN, 1908insNN, 1909insNN, 1910insNN, 1911insNN,
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1912insNN, 1913insNN, 1914insNN, 1915insNN, 1916insNN, 1917insNN, 1918insNN,
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1919insNN, 1920insNN, 1921insNN, 1922insNN, 1923insNN, 1924insNN, 1925insNN,
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1926insNN, 1927insNN, 1928insNN, 1929insNN, 1930insNN, 1931insNN, 1932insNN,
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1933insNN, 1934insNN, 1935insNN, 1936insNN, 1937insNN, 1938insNN, 1939insNN,
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1940insNN, 1941insNN, 1942insNN, 1943insNN, 1944insNN, 1945insNN, 1946insNN,
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1947insNN, 1948insNN, 1949insNN, 1950insNN, 1951insNN, 1952insNN, 1953insNN,
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1954insNN, 1955insNN, 1956insNN, 1957insNN, 1958insNN, 1959insNN, 1960insNN,
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1961insNN, 1962insNN, 1963insNN, 1964insNN, 1965insNN, 1966insNN, 1967insNN,
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1968insNN, 1969insNN, 1970insNN, 1971insNN, 1972insNN, 1973insNN, 1974insNN,
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1975insNN, 1976insNN, 1977insNN, 1978insNN, 1979insNN, 1980insNN, 1981insNN,
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1982insNN, 1983insNN, 1984insNN, 1985insNN, 1986insNN, 1987insNN, 1988insNN,
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1989insNN, 1990insNN, 1991insNN, 1992insNN, 1993insNN, 1994insNN, 1995insNN,
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1996insNN, 1997insNN, 1998insNN, 1999insNN, 2000insNN, 2001insNN, 2002insNN,
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2003insNN, 2004insNN, 2005insNN, 2006insNN, 2007insNN, 2008insNN, 2009insNN,
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2010insNN, 2011insNN, 2012insNN, 2013insNN, 2014insNN, 2015insNN, 2016insNN,
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2017insNN, 2018insNN, 2019insNN, 2020insNN, 2021insNN, 2022insNN, 2023insNN,
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2024insNN, 2025insNN, 2026insNN, 2027insNN, 2028insNN, 2029insNN, 2030insNN,
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2031insNN, 2032insNN, 2033insNN, 2034insNN, 2035insNN, 2036insNN, 2037insNN,
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2038insNN, 2039insNN, 2040insNN, 2041insNN, 2042insNN, 2043insNN, 2044insNN,
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2045insNN, 2046insNN, 2047insNN, 2048insNN, 2049insNN, 2050insNN, 2051insNN,
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2052insNN, 2053insNN, 2054insNN, 2055insNN, 2056insNN, 2057insNN, 2058insNN,
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2059insNN, 2060insNN, 2061insNN, 2062insNN, 2063insNN, 2064insNN, 2065insNN,
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2066insNN, 2067insNN, 2068insNN, 2069insNN, 2070insNN, 2071insNN, 2072insNN,
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2073insNN, 2074insNN, 2075insNN, 2076insNN, 2077insNN, 2078insNN, 2079insNN,
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2080insNN, 2081insNN, 2082insNN, 2083insNN, 2084insNN, 2085insNN, 2086insNN,
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2087insNN, 2088insNN, 2089insNN, 2090insNN, 2091insNN, 2092insNN, 2093insNN,
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2094insNN, 2095insNN, 2096insNN, 2097insNN, 2098insNN, 2099insNN, 2100insNN,
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2101insNN, 2102insNN, 2103insNN, 2104insNN, 2105insNN, 2106insNN, 2107insNN,
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2108insNN, 2109insNN, 2110insNN, 2111insNN, 2112insNN, 2113insNN, 2114insNN,
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2115insNN, 2116insNN, 2117insNN, 2118insNN, 2119insNN, 2120insNN, 2121insNN,
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2122insNN, 2123insNN, 2124insNN, 2125insNN, 2126insNN, 2127insNN, 2128insNN,
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2129insNN, 2130insNN, 2131insNN, 2132insNN, 2133insNN, 2134insNN, 2135insNN,
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2136insNN, 2137insNN, 2138insNN, 2139insNN, 2140insNN, 2141insNN, 2142insNN,
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2143insNN, 2144insNN, 2145insNN, 2146insNN, 2147insNN, 2148insNN, 2149insNN,
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2150insNN, 2151insNN, 2152insNN, 2153insNN, 2154insNN, 2155insNN, 2156insNN,
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2157insNN, 2158insNN, 2159insNN, 2160insNN, 2161insNN, 2162insNN, 2163insNN,
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2164insNN, 2165insNN, 2166insNN, 2167insNN, 2168insNN, 2169insNN, 2170insNN,
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2171insNN, 2172insNN, 2173insNN, 2174insNN, 2175insNN, 2176insNN, 2177insNN,
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2178insNN, 2179insNN, 2180insNN, 2181insNN, 2182insNN, 2183insNN, 2184insNN,
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2185insNN, 2186insNN, 2187insNN, 2188insNN, 2189insNN, 2190insNN, 2191insNN,
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2192insNN, 2193insNN, 2194insNN, 2195insNN, 2196insNN, 2197insNN, 2198insNN,
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2199insNN, 2200insNN, 2201insNN, 2202insNN, 2203insNN, 2204insNN, 2205insNN,
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2206insNN, 2207insNN, 2208insNN, 2209insNN, 2210insNN, 2211insNN, 2212insNN,
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2213insNN, 2214insNN, 2215insNN, 2216insNN, 2217insNN, 2218insNN, 2219insNN,
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2220insNN, 2221insNN, 2222insNN, 2223insNN, 2224insNN, 2225insNN, 2226insNN,
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2227insNN, 2228insNN, 2229insNN, 2230insNN, 2231insNN, 2232insNN, 2233insNN,
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2234insNN, 2235insNN, 2236insNN, 2237insNN, 2238insNN, 2239insNN, 2240insNN,
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2241insNN, 2242insNN, 2243insNN, 2244insNN, 2245insNN, 2246insNN, 2247insNN,
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2248insNN, 2249insNN, 2250insNN, 2251insNN, 2252insNN, 2253insNN, 2254insNN,
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2255insNN, 2256insNN, 2257insNN, 2258insNN, 2259insNN, 2260insNN, 2261insNN,
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2262insNN, 2263insNN, 2264insNN, 2265insNN, 2266insNN, 2267insNN, 2268insNN,
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2269insNN, 2270insNN, 2271insNN, 2272insNN, 2273insNN, 2274insNN, 2275insNN,
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2276insNN, 2277insNN, 2278insNN, 2279insNN, 2280insNN, 2281insNN, 2282insNN,
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2283insNN, 2284insNN, 2285insNN, 2286insNN, 2287insNN, 2288insNN, 2289insNN,
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2290insNN, 2291insNN, 2292insNN, 2293insNN, 2294insNN, 2295insNN, 2296insNN,
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2297insNN, 2298insNN, 2299insNN, 2300insNN, 2301insNN, 2302insNN, 2303insNN,
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2304insNN, 2305insNN, 2306insNN, 2307insNN, 2308insNN, 2309insNN, 2310insNN,
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2311insNN, 2312insNN, 2313insNN, 2314insNN, 2315insNN, 2316insNN, 2317insNN,
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2318insNN, 2319insNN, 2320insNN, 2321insNN, 2322insNN, 2323insNN, 2324insNN,
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2325insNN, 2326insNN, 2327insNN, 2328insNN, 2329insNN, 2330insNN, 2331insNN,
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2332insNN, 2333insNN, 2334insNN, 2335insNN, 2336insNN, 2337insNN, 2338insNN,
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2339insNN, 2340insNN, 2341insNN, 2342insNN, 2343insNN, 2344insNN, 2345insNN,
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2346insNN, 2347insNN, 2348insNN, 2349insNN, 2350insNN, 2351insNN, 2352insNN,
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2353insNN, 2354insNN, 2355insNN, 2356insNN, 2357insNN, 2358insNN, 2359insNN,
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2360insNN, 2361insNN, 2362insNN, 2363insNN, 2364insNN, 2365insNN, 2366insNN,
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2367insNN, 2368insNN, 2369insNN, 2370insNN, 2371insNN, 2372insNN, 2373insNN,
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2374insNN, 2375insNN, 2376insNN, 2377insNN, 2378insNN, 2379insNN, 2380insNN,
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2381insNN, 2382insNN, 2383insNN, 2384insNN, 2385insNN, 2386insNN, 2387insNN,
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2388insNN, 2389insNN, 2390insNN, 2391insNN, 2392insNN, 2393insNN, 2394insNN,
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2395insNN, 2396insNN, 2397insNN, 2398insNN, 2399insNN, 2400insNN, 2401insNN,
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2402insNN, 2403insNN, 2404insNN, 2405insNN, 2406insNN, 2407insNN, 2408insNN,
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2409insNN, 2410insNN, 2411insNN, 2412insNN, 2413insNN, 2414insNN, 2415insNN,
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2416insNN, 2417insNN, 2418insNN, 2419insNN, 2420insNN, 2421insNN, 2422insNN,
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2423insNN, 2424insNN, 2425insNN, 2426insNN, 2427insNN, 2428insNN, 2429insNN,
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2430insNN, 2431insNN, 2432insNN, 2433insNN, 2434insNN, 2435insNN, 2436insNN,
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2437insNN, 2438insNN, 2439insNN, 2440insNN, 2441insNN, 2442insNN, 2443insNN,
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2444insNN, 2445insNN, 2446insNN, 2447insNN, 2448insNN, 2449insNN, 2450insNN,
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2451insNN, 2452insNN, 2453insNN, 2454insNN, 2455insNN, 2456insNN, 2457insNN,
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2458insNN, 2459insNN, 2460insNN, 2461insNN, 2462insNN, 2463insNN, 2464insNN,
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2465insNN, 2466insNN, 2467insNN, 2468insNN, 2469insNN, 2470insNN, 2471insNN,
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2472insNN, 2473insNN, 2474insNN, 2475insNN, 2476insNN, 2477insNN, 2478insNN,
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2479insNN, 2480insNN, 2481insNN, 2482insNN, 2483insNN, 2484insNN, 2485insNN,
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2486insNN, 2487insNN, 2488insNN, 2489insNN, 2490insNN, 2491insNN, 2492insNN,
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2493insNN, 2494insNN, 2495insNN, 2496insNN, 2497insNN, 2498insNN, 2499insNN,
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2500insNN, 2501insNN, 2502insNN, 2503insNN, 2504insNN, 2505insNN, 2506insNN,
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2507insNN, 2508insNN, 2509insNN, 2510insNN, 2511insNN, 2512insNN, 2513insNN,
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2514insNN, 2515insNN, 2516insNN, 2517insNN, 2518insNN, 2519insNN, 2520insNN,
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2521insNN, 2522insNN, 2523insNN, 2524insNN, 2525insNN, 2526insNN, 2527insNN,
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2528insNN, 2529insNN, 2530insNN, 2531insNN, 2532insNN, 2533insNN, 2534insNN,
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2535insNN, 2536insNN, 2537insNN, 2538insNN, 2539insNN, 2540insNN, 2541insNN,
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2542insNN, 2543insNN, 2544insNN, 2545insNN, 2546insNN, 2547insNN, 2548insNN,
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2549insNN, 2550insNN, 2551insNN, 2552insNN, 2553insNN, 2554insNN, 2555insNN,
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2556insNN, 2557insNN, 2558insNN, 2559insNN, 2560insNN, 2561insNN, 2562insNN,
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2563insNN, 2564insNN, 2565insNN, 2566insNN, 2567insNN, 2568insNN, 2569insNN,
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2570insNN, 2571insNN, 2572insNN, 2573insNN, 2574insNN, 2575insNN, 2576insNN,
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2577insNN, 2578insNN, 2579insNN, 2580insNN, 2581insNN, 2582insNN, 2583insNN,
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2584insNN, 2585insNN, 2586insNN, 2587insNN, 2588insNN, 2589insNN, 2590insNN,
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2591insNN, 2592insNN, 2593insNN, 2594insNN, 2595insNN, 2596insNN, 2597insNN,
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2598insNN, 2599insNN, 2600insNN, 2601insNN, 2602insNN, 2603insNN, 2604insNN,
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2605insNN, 2606insNN, 2607insNN, 2608insNN, 2609insNN, 2610insNN, 2611insNN,
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2612insNN, 2613insNN, 2614insNN, 2615insNN, 2616insNN, 2617insNN, 2618insNN,
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2619insNN, 2620insNN, 2621insNN, 2622insNN, 2623insNN, 2624insNN, 2625insNN,
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2626insNN, 2627insNN, 2628insNN, 2629insNN, 2630insNN, 2631insNN, 2632insNN,
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2633insNN, 2634insNN, 2635insNN, 2636insNN, 2637insNN, 2638insNN, 2639insNN,
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2640insNN, 2641insNN, 2642insNN, 2643insNN, 2644insNN, 2645insNN, 2646insNN,
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2647insNN, 2648insNN, 2649insNN, 2650insNN, 2651insNN, 2652insNN, 2653insNN,
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2654insNN, 2655insNN, 2656insNN, 2657insNN, 2658insNN, 2659insNN, 2660insNN,
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2661insNN, 2662insNN, 2663insNN, 2664insNN, 2665insNN, 2666insNN, 2667insNN,
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2668insNN, 2669insNN, 2670insNN, 2671insNN, 2672insNN, 2673insNN, 2674insNN,
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2675insNN, 2676insNN, 2677insNN, 2678insNN, 2679insNN, 2680insNN, 2681insNN,
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2682insNN, 2683insNN, 2684insNN, 2685insNN, 2686insNN, 2687insNN, 2688insNN,
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2689insNN, 2690insNN, 2691insNN, 2692insNN, 2693insNN, 2694insNN, 2695insNN,
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2696insNN, 2697insNN, 2698insNN, 2699insNN, 2700insNN, 2701insNN, 2702insNN,
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2703insNN, 2704insNN, 2705insNN, 2706insNN, 2707insNN, 2708insNN, 2709insNN,
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2710insNN, 2711insNN, 2712insNN, 2713insNN, 2714insNN, 2715insNN, 2716insNN,
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2717insNN, 2718insNN, 2719insNN, 2720insNN, 2721insNN, 2722insNN, 2723insNN,
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2724insNN, 2725insNN, 2726insNN, 2727insNN, 2728insNN, 2729insNN, 2730insNN,
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2731insNN, 2732insNN, 2733insNN, 2734insNN, 2735insNN, 2736insNN, 2737insNN,
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2738insNN, 2739insNN, 2740insNN, 2741insNN, 2742insNN, 2743insNN, 2744insNN,
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2759insNN, 2760insNN, 2761insNN, 2762insNN, 2763insNN, 2764insNN, 2765insNN,
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2815insNN, 2816insNN, 2817insNN, 2818insNN, 2819insNN, 2820insNN, 2821insNN,
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4754insNN, 4755insNN, 4756insNN, 4757insNN, 4758insNN, 4759insNN, 4760insNN,
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4761insNN, 4762insNN, 4763insNN, 4764insNN, 4765insNN, 4766insNN, 4767insNN,
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4768insNN, 4769insNN, 4770insNN, 4771insNN, 4772insNN, 4773insNN, 4774insNN,
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4775insNN, 4776insNN, 4777insNN, 4778insNN, 4779insNN, 4780insNN, 4781insNN,
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4782insNN, 4783insNN, 4784insNN, 4785insNN, 4786insNN, 4787insNN, 4788insNN,
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4789insNN, 4790insNN, 4791insNN, 4792insNN, 4793insNN, 4794insNN, 4795insNN,
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4796insNN, 4797insNN, 4798insNN, 4799insNN, 4800insNN, 4801insNN, 4802insNN,
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4803insNN, 4804insNN, 4805insNN, 4806insNN, 4807insNN, 4808insNN, 4809insNN,
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4810insNN, 4811insNN, 4812insNN, 4813insNN, 4814insNN, 4815insNN, 4816insNN,
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4817insNN, 4818insNN, 4819insNN, 4820insNN, 4821insNN, 4822insNN, 4823insNN,
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4824insNN, 4825insNN, 4826insNN, 4827insNN, 4828insNN, 4829insNN, 4830insNN,
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4831insNN, 4832insNN, 4833insNN, 4834insNN, 4835insNN, 4836insNN, 4837insNN,
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4838insNN, 4839insNN, 4840insNN, 4841insNN, 4842insNN, 4843insNN, 4844insNN,
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4845insNN, 4846insNN, 4847insNN, 4848insNN, 4849insNN, 4850insNN, 4851insNN,
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4852insNN, 4853insNN, 4854insNN, 4855insNN, 4856insNN, 4857insNN, 4858insNN,
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4859insNN, 4860insNN, 4861insNN, 4862insNN, 4863insNN, 4864insNN, 4865insNN,
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4866insNN, 4867insNN, 4868insNN, 4869insNN, 4870insNN, 4871insNN, 4872insNN,
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4873insNN, 4874insNN, 4875insNN, 4876insNN, 4877insNN, 4878insNN, 4879insNN,
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4880insNN, 4881insNN, 4882insNN, 4883insNN, 4884insNN, 4885insNN, 4886insNN,
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4887insNN, 4888insNN, 4889insNN, 4890insNN, 4891insNN, 4892insNN, 4893insNN,
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4894insNN, 4895insNN, 4896insNN, 4897insNN, 4898insNN, 4899insNN, 4900insNN,
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4901insNN, 4902insNN, 4903insNN, 4904insNN, 4905insNN, 4906insNN, 4907insNN,
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4908insNN, 4909insNN, 4910insNN, 4911insNN, 4912insNN, 4913insNN, 4914insNN,
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4915insNN, 4916insNN, 4917insNN, 4918insNN, 4919insNN, 4920insNN, 4921insNN,
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4922insNN, 4923insNN, 4924insNN, 4925insNN, 4926insNN, 4927insNN, 4928insNN,
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4929insNN, 4930insNN, 4931insNN, 4932insNN, 4933insNN, 4934insNN, 4935insNN,
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4936insNN, 4937insNN, 4938insNN, 4939insNN, 4940insNN, 4941insNN, 4942insNN,
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4943insNN, 4944insNN, 4945insNN, 4946insNN, 4947insNN, 4948insNN, 4949insNN,
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4950insNN, 4951insNN, 4952insNN, 4953insNN, 4954insNN, 4955insNN, 4956insNN,
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4957insNN, 4958insNN, 4959insNN, 4960insNN, 4961insNN, 4962insNN, 4963insNN,
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4964insNN, 4965insNN, 4966insNN, 4967insNN, 4968insNN, 4969insNN, 4970insNN,
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4971insNN, 4972insNN, 4973insNN, 4974insNN, 4975insNN, 4976insNN, 4977insNN,
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4978insNN, 4979insNN, 4980insNN, 4981insNN, 4982insNN, 4983insNN, 4984insNN,
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4985insNN, 4986insNN, 4987insNN, 4988insNN, 4989insNN, 4990insNN, 4991insNN,
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4992insNN, 4993insNN, 4994insNN, 4995insNN, 4996insNN, 4997insNN, 4998insNN,
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4999insNN, 5000insNN, 5001insNN, 5002insNN, 5003insNN, 5004insNN, 5005insNN,
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5006insNN, 5007insNN, 5008insNN, 5009insNN, 5010insNN, 5011insNN, 5012insNN,
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5013insNN, 5014insNN, 5015insNN, 5016insNN, 5017insNN, 5018insNN, 5019insNN,
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5020insNN, 5021insNN, 5022insNN, 5023insNN, 5024insNN, 5025insNN, 5026insNN,
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5027insNN, 5028insNN, 5029insNN, 5030insNN, 5031insNN, 5032insNN, 5033insNN,
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5034insNN, 5035insNN, 5036insNN, 5037insNN, 5038insNN, 5039insNN, 5040insNN,
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5041insNN, 5042insNN, 5043insNN, 5044insNN, 5045insNN, 5046insNN, 5047insNN,
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5048insNN, 5049insNN, 5050insNN, 5051insNN, 5052insNN, 5053insNN, 5054insNN,
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5055insNN, 5056insNN, 5057insNN, 5058insNN, 5059insNN, 5060insNN, 5061insNN,
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5062insNN, 5063insNN, 5064insNN, 5065insNN, 5066insNN, 5067insNN, 5068insNN,
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5069insNN, 5070insNN, 5071insNN, 5072insNN, 5073insNN, 5074insNN, 5075insNN,
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5076insNN, 5077insNN.
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[0231] The present invention is not to be limited in scope by the specific embodiments described herein, which are intended as single illustrations of individual aspects of the invention, and functionally equivalent methods and components are within the scope of the invention. Indeed, various modifications of the invention, in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and accompanying drawings. Such modifications are intended to fall within the scope of the appended claims.
[0232] All references mentioned herein are incorporated by reference.
Claims
- 1. An isolated mutant BRCA1 gene or polynucleotide fragment thereof containing a mutation site, or a polynucleotide complementary to said gene or said fragment, having an in-frame stop codon before codon 1863, with the proviso that the mutation site not be one defined by TABLE 1.
- 2. An isolated mutant BRCA1 gene, a polynucleotide fragment of said mutant BRCA1 gene, or a complementary polynucleotide to said mutant BRCA1 gene or said fragment, according to claim 1, containing a truncating mutation and forming a stop codon as defined in TABLES 3-7, wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 3. An isolated mutant BRCA1 gene, a polynucleotide fragment of said mutant BRCA1 gene or a complementary polynucleotide to said mutant BRCA1 gene or said fragment according to claim 1, containing a truncating mutation and having the sequence 5′ R1-R2-R3 3′; where
R1 is a wild type BRCA1 DNA sequence from nucleotide number 120 to X, R2 is TAA, TAG or TGA, and R3 is a wild type BRCA1 DNA sequence from nucleotide number X+4 to 5711 and where X=123 to 5710; or R1 is a wild type BRCA1 DNA sequence from nucleotide number 120 to X, R2 is zero nucleotides, and R3 is the wild type BRCA1 DNA sequence from nucleotides X+Y+1 to 5711, where Y is an integer of 3n+1 or 3n+2 where n=0 to 1861 and where X=123 to 5707; or R1 is a wild type BRCA1 DNA sequence from nucleotide number 120 to X, R2 is Y nucleotides of any sequence, and R3 contains the wild type BRCA1 DNA sequence of nucleotide number X+1 to 5711, where Y is 3n+1 or 3n+2 where n is an integer of zero or greater, and where X=123 to 5707; wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein, with the proviso that the mutation not be one defined by TABLE 1.
- 4. An isolated mutant BRCA1 gene or a polynucleotide fragment thereof, or a polynucleotide complementary to said mutant BRCA1 gene or said fragment according to claim 1, containing a truncating mutation site and capable of specifically hybridizing to an oligonucleotide probe being at least 12 nucleotides in length and having the sequence 5′ R1-R2-R3 3′; where either
R1 contains at its 3′ end three nucleotides complementary to codon X-1 of the wild-type BRCA1 gene; R2 is complementary to TAG, TAA or TGA, and R3 contains at its 5′ end three nucleotides complementary to codon X+1 of the wild type BRCA1 gene, where X=2 to 1862; or R1 contains at its 3′ end three nucleotides complementary to nucleotide numbers X-2 to X of the wild-type BRCA1 gene, R2 is an oligonucleotide having Y nucleotides of any sequence, R3 contains at its 5′ end three nucleotides complementary to nucleotide numbers X+1 to X+3 of the wild type BRCA1 gene, where Y is an integer greater than zero and is not 3 or a multiple of 3, where X=122 to 5707; or R1 contains at its 3′ end three nucleotides complementary to nucleotide numbers X-2 to X of the wild-type BRCA1 gene, R2=zero, R3 contains at its 5′ end three nucleotides complementary to nucleotide numbers X+1+Y of the wild type BRCA1 DNA sequence, where Y=1 to 5582 but is not 3 or a multiple of 3 and where X=122 to 5706; wherein the oligonucleotide probe is unable to specifically hybridize to the wild-type BRCA1 gene; and with the proviso that the mutation not be one defined by TABLE 1.
- 5. A mutant BRCA1 gene or a polynucleotide fragment thereof, or a polynucleotide complementary to said mutant BRCA1 gene or said fragment according to claim 1, containing a premature stop codon and incapable of expressing a complete BRCA1 protein;
wherein said mutant BRCA1 gene contains a mutation resulting from a substituted nucleotide in the naturally occurring (wild-type) sequence so that an in-frame stop codon is formed at any of codon numbers 2-1863; or inserted or deleted 3n+1 or 3n+2 nucleotides, where n is an integer of 0 or greater, causing a frame shift mutation in the naturally occurring (wild-type) sequence so that an in-frame stop codon is formed at any of codon numbers 2-1863; wherein a mutant BRCA1 protein expressed from said mutant BRCA1 gene lacks full biological activity of naturally occurring (wild type) BRCA1 protein; and with the proviso that the mutation is not one of the mutations listed in TABLE 1.
- 6. A method for detecting a mutation in a sample containing a mutant BRCA1 gene according to claim 1, comprising:
a) amplifying at least a fragment of sample BRCA1 gene; b) dermining the sequence of said at least a fragment of the sample BRCA1 gene; and c) comparing the sequence obtained with a wild-type BRCA1 sequence; wherein the presence of the sequence of said mutation in said sample BRCA1 gene indicates the presence of a mutation in the sample.
- 7. A method for detecting a mutation in a sample containing a BRCA1 gene comprising:
a) amplifying at least a fragment of sample BRCA1 gene; b) determining the sequence of said at least a fragment of sample BRCA1 gene; and c) comparing the sequence obtained with one or more sequences of mutant BRCA1 genes according to claim 1;wherein the presence of a sequence of said mutant BRCA1 gene indicates the presence of a mutation in the sample.
- 8. A method for detecting a mutation in a BRCA1 gene comprising:
a) obtaining a BRCA1 protein expressed by a BRCA1 gene according to claim 1; and b) determining the relative molecular weight of said BRCA1 protein compared to wild type BRCA1 protein; c) wherein the presence of said BRCA1 protein having a molecular weight less than that of wild-type BRCA1 protein indicates the presence of a mutation in the BRCA1 gene.
- 9. An oligonucleotide capable of specifically hybridizing to either:
a) a DNA containing a mutant BRCA1 as defined in claim 1, or a DNA having a sequence complementary thereto; or b) a DNA containing a wild-type BRCA1 sequence at a mutation site other than defined by TABLE 1, or a DNA having a sequence complementary thereto; but not both a) and b).
- 10. A plurality of oligonucleotides comprising at least one oligonucleotide according to claim 9 and at least one additional oligonucleotide capable of specifically hybridizing to the wild-type BRCA1 gene or its complement.
- 11. A chip array having “n” elements for performing allele specific sequence-based techniques using the oligonucleotide probes comprising, a solid phase chip and a plurality of oligonucleotides of claim 10 having “n” different nucleotide sequences, wherein “n” is an integer greater than one;
wherein said oligonucleotides are bound to said solid phase chip in a manner which permits said oligonucleotides to effectively hybridize to complementary oligonucleotides or polynucleotides; wherein oligonucleotides having different nucleotide sequences are bound to said solid phase chip at different locations so that a particular location on said solid phase chip exclusively binds oligonucleotides having a specific nucleotide sequence; and wherein at least one oligonucleotide is capable of specifically hybridizing to a mutant BRCA1 gene having a truncating mutation as defined by TABLES 3-7 or a DNA complementary thereto, with the proviso that the mutation not be one defined by TABLE 1, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 12. A method for detecting the presence or absence of a BRCA1 gene mutation in a sample DNA comprising, specifically hybridizing sample DNA with an oligonucleotide according to claim 9 under stringent conditions and determining whether said oligonucleotide specifically hybridizes to said sample DNA.
- 13. A method for determining therapy for an individual having a tumor comprising:
a) obtaining a DNA containing biological sample from the individual having a tumor; b) determining whether the DNA contains a mutant BRCA1 gene according to claim 1, or a DNA complementary thereto; and c) determining appropriate therapy based on the presence or absence of said mutant BRCA1 gene; wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 14. A method for determining whether to begin diagnostic or prophylactic treatment for an individual comprising:
a) obtaining a DNA containing biological sample from the individual; b) determining whether the DNA contains a mutant BRCA1 gene according to claim 1; and c) determining appropriate diagnostic or prophylactic treatment based on the presence or absence of said mutant BRCA1 gene; wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 15. A method for treating a condition associated with a mutant BRCA1 gene comprising administering biologically active BRCA1 protein to a patient with a condition associated with a mutant BRCA1 gene wherein said patient contains cells having a mutant BRCA1 gene according to claim 1, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 16. A method for preventing a condition associated with a mutant BRCA1 gene comprising administering biologically active BRCA1 protein to a patient with a cancer wherein said patient contains cells having a truncating BRCA1 gene mutation according to claim 1, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 17. A method for determining appropriate gene therapy for an individual comprising detecting the presence of a mutant BRCA1 gene according to claim 1, in cells from the individual and administering a DNA containing biologically active BRCA1 gene to the individual, wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 18. A method for detecting a mutation in a sample containing a mutant BRCA1 gene according to claim 2, comprising:
a) amplifying at least a fragment of sample BRCA1 gene; b) determining the sequence of said at least a fragment of sample BRCA1 gene; and c) comparing the sequence obtained with a wild-type BRCA1 sequence; wherein the presence of the sequence of said mutant BRCA1 gene indicates the presence of a mutation in the sample.
- 19. A method for detecting a mutation in a sample containing a BRCA1 gene comprising:
a) amplifying at least a fragment of sample BRCA1 gene; b) determining the sequence of said at least a fragment of sample BRCA1 gene; and c) comparing the sequence obtained with one or more of mutant BRCA1 genes according to claim 2;wherein the presence of a sequence of said mutant BRCA1 gene indicates the presence of a mutation in the sample.
- 20. A method for detecting a mutation in a BRCA1 gene comprising:
a) obtaining a BRCA1 protein expressed by a BRCA1 gene according to claim 2; and b) determining the relative molecular weight of said BRCA1 protein compared to wild type BRCA1 protein; wherein the presence of said BRCA1 protein having a molecular weight less than that of wild-type BRCA1 protein indicates the presence of a mutation in the BRCA1 gene.
- 21. An oligonucleotide capable of specifically hybridizing to either:
a) a DNA containing a mutant BRCA1 as defined in claim 2, or a DNA having a sequence complementary thereto; or b) a DNA containing a wild-type BRCA1 sequence at a mutation site other than defined by TABLE 1, or a DNA having a sequence complementary thereto; but not both a) and b).
- 22. A plurality of oligonucleotides comprising at least one oligonucleotide according to claim 21 and at least one additional oligonucleotide capable of specifically hybridizing to the wild-type BRCA1 gene or its complement.
- 23. A chip array having “n” elements for performing allele specific sequence-based techniques using the oligonucleotide probes comprising a solid phase chip and a plurality of oligonucleotides of claim 22 having “n” different nucleotide sequences, wherein “n” is an integer greater than two;
wherein said oligonucleotides are bound to said solid phase chip in a manner which permits said oligonucleotides to effectively hybridize to complementary oligonucleotides or polynucleotides; wherein oligonucleotides having different nucleotide sequences are bound to said solid phase chip at different locations so that a particular location on said solid phase chip exclusively binds oligonucleotides having a specific nucleotide sequence; and wherein at least one oligonucleotide is capable of specifically hybridizing to a mutant BRCA1 gene having a truncating mutation as defined by TABLES 3-7 or a DNA complementary thereto, with the proviso that the mutation not be one defined by TABLE 1, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 24. A method for detecting the presence or absence of a BRCA1 gene mutation in a sample DNA comprising specifically hybridizing sample DNA with an oligonucleotide according to claim 21 under stringent conditions and determining whether said oligonucleotide specifically hybridizes to said sample DNA.
- 25. A method for determining therapy for an individual having a tumor comprising obtaining a DNA containing biological sample from the individual having a tumor, determining whether the DNA contains a mutant BRCA1 gene according to claim 2, or a DNA complementary thereto, and determining appropriate therapy based on the presence or absence of said mutant BRCA1 gene, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 26. A method for determining whether to begin diagnostic or prophylactic treatment for an individual comprising:
a) taking a DNA containing biological sample from the individual; b) determining whether the DNA contains a mutant BRCA1 gene according to claim 2; and c) determining appropriate diagnostic or prophylactic treatment based on the presence or absence of said mutant BRCA1 gene; wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 27. A method for treating a condition associated with a mutant BRCA1 gene comprising, administering biologically active BRCA1 protein to a patient with a condition associated with a mutant BRCA1 gene wherein said patient contains cells having a mutant BRCA1 gene according to claim 2, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 28. A method for preventing a condition associated with a mutant BRCA1 gene comprising, administering biologically active BRCA1 protein to a patient with a cancer wherein said patient contains cells having a truncating BRCA1 gene mutation according to claim 2, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 29. A method for determining appropriate gene therapy for an individual comprising, detecting the presence of a mutant BRCA1 gene according to claim 2, in cells from the individual and administering a DNA containing biologically active BRCA1 gene to the individual, wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 30. A method for detecting a mutation in a sample containing a mutant BRCA1 gene according to claim 3, comprising:
a) amplifying at least a fragment of sample BRCA1 gene; b) determining the sequence of said at least a fragment of sample BRCA1 gene; and c) comparing the sequence obtained with a wild-type BRCA1 sequence; wherein the presence of the sequence of said mutant BRCA1 gene indicates the presence of a mutation in the sample.
- 31. A method for detecting a mutation in a sample containing a BRCA1 gene comprising:
a) amplifying at least a fragment of sample BRCA1 gene; b) determining the sequence of said at least a fragment of sample BRCA1 gene; and c) comparing the sequence obtained with one or more of mutant BRCA1 genes according to claim 3;wherein the presence of a sequence of said mutant BRCA1 gene indicates the presence of a mutation in the sample.
- 32. A method for detecting a mutation in a BRCA1 gene comprising, obtaining a BRCA1 protein expressed by a BRCA1 gene according to claim 3, and determining the relative molecular weight of said BRCA1 protein compared to wild type BRCA1 protein, wherein the presence of said BRCA1 protein having a molecular weight less than that of wild-type BRCA1 protein indicates the presence of a mutation in the BRCA1 gene.
- 33. An oligonucleotide capable of specifically hybridizing to either:
a) a DNA containing a mutant BRCA1 as defined in claim 3, or a DNA having a sequence complementary thereto; or b) a DNA containing a wild-type BRCA1 sequence at a mutation site other than defined by TABLE 1, or a DNA having a sequence complementary thereto; but not both a) and b).
- 34. A plurality of oligonucleotides comprising at least one oligonucleotide according to claim 33 and at least one additional oligonucleotide capable of specifically hybridizing to the wild-type BRCA1 gene or its complement.
- 35. A chip array having “n” elements for performing allele specific sequence-based techniques using oligonucleotide probes comprising, a solid phase chip and a plurality of oligonucleotides of claim 34 having “n” different nucleotide sequences, wherein “n” is an integer greater than two;
wherein said oligonucleotides are bound to said solid phase chip in a manner which permits said oligonucleotides to effectively hybridize to complementary oligonucleotides or polynucleotides; wherein oligonucleotides having different nucleotide sequences are bound to said solid phase chip at different locations so that a particular location on said solid phase chip exclusively binds oligonucleotides having a specific nucleotide sequence; and wherein at least one oligonucleotide is capable of specifically hybridizing to a mutant BRCA1 gene having a truncating mutation as defined by TABLES 3-7 or a DNA complementary thereto, with the proviso that the mutation not be one defined by TABLE 1, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 36. A method for detecting the presence or absence of a BRCA1 gene mutation in a sample DNA comprising, specifically hybridizing sample DNA with an oligonucleotide according to claim 33 under stringent conditions, and determining whether said oligonucleotide specifically hybridizes to said sample DNA.
- 37. A method for determining therapy for an individual having a tumor comprising;
a) obtaining a DNA containing biological sample from the individual having a tumor; b) determining whether the DNA contains a mutant BRCA1 gene according to claim 3, or a DNA complementary thereto; and c) determining appropriate therapy based on the presence or absence of said mutant BRCA1 gene; wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks fill biological activity of wild-type BRCA1 protein.
- 38. A method for determining whether to begin diagnostic or prophylactic treatment for an individual comprising:
a) obtaining a DNA containing biological sample from the individual; b) determining whether the DNA contains a mutant BRCA1 gene according to claim 3; and c) determining appropriate diagnostic or prophylactic treatment based on the presence or absence of said mutant BRCA1 gene; wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks fill biological activity of wild-type BRCA1 protein.
- 39. A method for treating a condition associated with a mutant BRCA1 gene comprising,, administering biologically active BRCA1 protein to a patient with a condition associated with a mutant BRCA1 gene wherein said patient contains cells having a mutant BRCA1 gene according to claim 3, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 40. A method for preventing a condition associated with a mutant BRCA1 gene comprising, administering biologically active BRCA1 protein to a patient with a cancer wherein said patient contains cells having a truncating BRCA1 gene mutation according to claim 3, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 41. A method for determining appropriate gene therapy for an individual comprising, detecting the presence of a mutant BRCA1 gene according to claim 3 in cells from the individual and administering a DNA containing biologically active BRCA1 gene to the individual, wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 42. A method for detecting a mutation in a sample containing a mutant BRCA1 gene according to claim 4, comprising:
a) amplifying at least a fragment of sample BRCA1 gene; b) determining the sequence of said at least a fragment of sample BRCA1 gene; and c) comparing the sequence obtained with a wild-type BRCA1 sequence; wherein the presence of the sequence of said mutant BRCA1 gene indicates the presence of a mutation in the sample.
- 43. A method for detecting a mutation in a sample containing a BRCA1 gene comprising:
a) amplifying at least a fragment of sample BRCA1 gene; b) determining the sequence of said at least a fragment of sample BRCA1 gene; and c) comparing the sequence obtained with one or more of mutant BRCA1 genes according to claim 4;wherein the presence of a sequence of said mutant BRCA1 gene indicates the presence of a mutation in the sample.
- 44. A method for detecting a mutation in a BRCA1 gene comprising, obtaining a BRCA1 protein expressed by a BRCA1 gene according to claim 4, and determining the relative molecular weight of said BRCA1 protein compared to wild type BRCA1 protein, wherein the presence of said BRCA1 protein having a molecular weight less than that of wild-type BRCA1 protein indicates the presence of a mutation in the BRCA1 gene.
- 45. An oligonucleotide capable of specifically hybridizing to either:
a) a DNA containing a mutant BRCA1 as defined in claim 4, or a DNA having a sequence complementary thereto; or b) a DNA containing a wild-type BRCA1 sequence at a mutation site other than defined by TABLE 1, or a DNA having a sequence complementary thereto; but not both a) and b).
- 46. A plurality of oligonucleotides comprising at least one oligonucleotide according to claim 45 and at least one additional oligonucleotide capable of specifically hybridizing to the wild-type BRCA1 gene or its complement.
- 47. A chip array having “n” elements for performing allele specific sequence-based techniques using the oligonucleotide probes comprising, a solid phase chip and a plurality of oligonucleotides of claim 46 having “n” different nucleotide sequences, wherein “n” is an integer greater than two;
wherein said oligonucleotides are bound to said solid phase chip in a manner which permits said oligonucleotides to effectively hybridize to complementary oligonucleotides or polynucleotides; wherein oligonucleotides having different nucleotide sequences are bound to said solid phase chip at different locations so that a particular location on said solid phase chip exclusively binds oligonucleotides having a specific nucleotide sequence; and wherein at least one oligonucleotide is capable of specifically hybridizing to a mutant BRCA1 gene having a truncating mutation as defined by TABLES 3-7 or a DNA complementary thereto, with the proviso that the mutation not be one defined by TABLE 1, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 48. A method for detecting the presence or absence of a BRCA1 gene mutation in a sample DNA comprising, specifically hybridizing sample DNA with an oligonucleotide according to claim 45 under stringent conditions, determining whether said oligonucleotide specifically hybridizes to said sample DNA.
- 49. A method for determining therapy for an individual having a tumor comprising;
a) obtaining a DNA containing biological sample from the individual having a tumor; b) determining whether the DNA contains a mutant BRCA1 gene according to claim 4, or a DNA complementary thereto; and c) determining appropriate therapy based on the presence or absence of said mutant BRCA1 gene; wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 50. A method for determining whether to begin diagnostic or prophylactic treatment for an individual comprising:
a) taking a DNA containing biological sample from the individual; b) determining whether the DNA contains a mutant BRCA1 gene according to claim 4; and c) determining appropriate diagnostic or prophylactic treatment based on the presence or absence of said mutant BRCA1 gene; wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 51. A method for treating a condition associated with a mutant BRCA1 gene comprising, administering biologically active BRCA1 protein to a patient with a condition associated with a mutant BRCA1 gene wherein said patient contains cells having a mutant BRCA1 gene according to claim 4, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 52. A method for preventing a condition associated with a mutant BRCA1 gene comprising, administering biologically active BRCA1 protein to a patient with a cancer, wherein said patient contains cells having a truncating BRCA1 gene mutation according to claim 4, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 53. A method for determining appropriate gene therapy for an individual comprising, detecting the presence of a mutant BRCA1 gene according to claim 4 in cells from the individual, and administering a DNA containing biologically active BRCA1 gene to the individual, wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 54. A method for detecting a mutation in a sample containing a mutant BRCA1 gene according to claim 5, comprising, amplifying at least a fragment of said BRCA1 gene, determining the sequence of said at least a fragment of said BRCA1 gene, and comparing the sequence obtained with a wild-type BRCA1 sequence, wherein the presence of the sequence of said mutant BRCA1 gene indicates the presence of a mutation in the sample.
- 55. A method for detecting a mutation in a sample containing a BRCA1 gene comprising, amplifying at least a fragment of said BRCA1 gene, determining the sequence of said at least a fragment of said BRCA1 gene, and comparing the sequence obtained with one or more of mutant BRCA1 genes according to claim 5, wherein the presence of a sequence of said mutant BRCA1 gene indicates the presence of a mutation in the sample.
- 56. A method for detecting a mutation in a BRCA1 gene comprising, obtaining a BRCA1 protein expressed by a BRCA1 gene according to claim 5, and determining the relative molecular weight of said BRCA1 protein compared to wild type BRCA1 protein, wherein the presence of said BRCA1 protein having a molecular weight less than that of wild-type BRCA1 protein indicates the presence of a mutation in the BRCA1 gene.
- 57. An oligonucleotide capable of specifically hybridizing to either:
a) a DNA containing a mutant BRCA1 as defined in claim 5, or a DNA having a sequence complementary thereto; or b) a DNA containing a wild-type BRCA1 sequence at a mutation site other than defined by TABLE 1, or a DNA having a sequence complementary thereto; but not both a) and b).
- 58. A plurality of oligonucleotides comprising at least one oligonucleotide according to claim 57 and at least one additional oligonucleotide capable of specifically hybridizing to the wild-type BRCA1 gene or its complement.
- 59. A chip array having “n” elements for performing allele specific sequence-based techniques using the oligonucleotide probes comprising, a solid phase chip and a plurality of oligonucleotides of claim 58 having “n” different nucleotide sequences, wherein “n” is an integer greater than two;
wherein said oligonucleotides are bound to said solid phase chip in a manner which permits said oligonucleotides to effectively hybridize to complementary oligonucleotides or polynucleotides; wherein oligonucleotides having different nucleotide sequences are bound to said solid phase chip at different locations so that a particular location on said solid phase chip exclusively binds oligonucleotides having a specific nucleotide sequence; and wherein at least one oligonucleotide is capable of specifically hybridizing to a mutant BRCA1 gene having a truncating mutation as defined by TABLES 3-7 or a DNA complementary thereto, with the proviso that the mutation not be one defined by TABLE 1, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 60. A method for detecting the presence or absence of a BRCA1 gene mutation in a sample DNA comprising, specifically hybridizing sample DNA with an oligonucleotide according to claim 57 under stringent conditions, and determining whether said oligonucleotide specifically hybridizes to said sample DNA.
- 61. A method for determining therapy for an individual having a tumor comprising;
a) obtianing a DNA containing biological sample from the individual having a tumor; b) determining whether the DNA contains a mutant BRCA1 gene according to claim 5, or a DNA complementary thereto; and c) determining appropriate therapy based on the presence or absence of said mutant BRCA1 gene; wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 62. A method for determining whether to begin diagnostic or prophylactic treatment for an individual comprising, taking a DNA containing biological sample from the individual, determining whether the DNA contains a mutant BRCA1 gene according to claim 5, and determining appropriate diagnostic or prophylactic treatment based on the presence or absence of said mutant BRCA1 gene, wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 63. A method for treating a condition associated with a mutant BRCA1 gene comprising, administering biologically active BRCA1 protein to a patient with a condition associated with a mutant BRCA1 gene, wherein said patient contains cells having a mutant BRCA1 gene according to claim 5, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 64. A method for preventing a condition associated with a mutant BRCA1 gene comprising, administering biologically active BRCA1 protein to a patient with a cancer, wherein said patient contains cells having a truncating BRCA1 gene mutation according to claim 5, wherein the BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 65. A method for determining appropriate gene therapy for an individual comprising, detecting the presence of a mutant BRCA1 gene according to claim 5 in cells from the individual, and administering a DNA containing biologically active BRCA1 gene to the individual, wherein the mutant BRCA1 gene codes for a truncated BRCA1 protein which lacks full biological activity of wild-type BRCA1 protein.
- 66. An isolated mutant BRCA1 gene according to claim 1, capable of expressing a truncated BRCA1 protein of less than 1854 amino acids.
Divisions (1)
|
Number |
Date |
Country |
Parent |
09697149 |
Oct 2000 |
US |
Child |
09982835 |
Oct 2001 |
US |
Continuations (1)
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Number |
Date |
Country |
Parent |
09038946 |
Mar 1998 |
US |
Child |
09697149 |
Oct 2000 |
US |