This application incorporates by reference the Sequence Listing submitted in Computer Readable Form as file P017Z_261212, created on Mar. 4, 2021 and containing 34,093 bytes.
Embodiments herein relate to treating illness with gene therapy, and more specifically, to nanoparticle delivery of mRNA encoding one or more gene products into subjects afflicted with a coronavirus.
Severe acute respiratory syndrome coronavirus 2 (SARS-COV-2) enters through the airways and infects the lungs, causing lethal pulmonary damage in vulnerable patients. This virus contains spike proteins on its envelope that binds to human angiotensin-converting enzyme 2 (hACE2) expressed on the surface of airway cells, enabling entry of the virus for causing infection. In severe cases, the virus enters the circulatory system, contributing to multi-organ failure. Remdesivir, an investigational antiviral drug, has shown encouraging evidence in improving time of recovery among patients. The overall mortality rate, however, remains unchanged while conflicting reports have emerged on clinical outcomes. Dexamethasone, an anti-inflammatory steroid repurposed for COVID-19, was shown to lower mortality in the patients when used in conjunction with respiratory support. Further treatments for SARS-COV-2 that can be rapidly prepared and readily distributed represent an urgent need to reduce the adverse impact of SARS-COV-2 on human health and the global economy.
Embodiments will be readily understood by the following detailed description in conjunction with the accompanying drawings and the appended claims. Embodiments are illustrated by way of example and not by way of limitation in the figures of the accompanying drawings.
In the following detailed description, reference is made to the accompanying drawings which form a part hereof, and in which are shown by way of illustration embodiments that may be practiced. It is to be understood that other embodiments may be utilized and structural or logical changes may be made without departing from the scope. Therefore, the following detailed description is not to be taken in a limiting sense.
Various operations may be described as multiple discrete operations in turn, in a manner that may be helpful in understanding embodiments; however, the order of description should not be construed to imply that these operations are order-dependent.
The description may use perspective-based descriptions such as up/down, back/front, and top/bottom. Such descriptions are merely used to facilitate the discussion and are not intended to restrict the application of disclosed embodiments.
The terms “coupled” and “connected,” along with their derivatives, may be used. It should be understood that these terms are not intended as synonyms for each other. Rather, in particular embodiments, “connected” may be used to indicate that two or more elements are in direct physical or electrical contact with each other. “Coupled” may mean that two or more elements are in direct physical or electrical contact. However, “coupled” may also mean that two or more elements are not in direct contact with each other, but yet still cooperate or interact with each other.
For the purposes of the description, a phrase in the form “A/B” or in the form “A and/or B” means (A), (B), or (A and B). For the purposes of the description, a phrase in the form “at least one of A, B, and C” means (A), (B), (C), (A and B), (A and C), (B and C), or (A, B and C). For the purposes of the description, a phrase in the form “(A)B” means (B) or (AB) that is, A is an optional element.
The description may use the terms “embodiment” or “embodiments,” which may each refer to one or more of the same or different embodiments. Furthermore, the terms “comprising,” “including,” “having,” and the like, as used with respect to embodiments, are synonymous, and are generally intended as “open” terms (e.g., the term “including” should be interpreted as “including but not limited to,” the term “having” should be interpreted as “having at least,” the term “includes” should be interpreted as “includes but is not limited to,” etc.).
With respect to the use of any plural and/or singular terms herein, those having skill in the art can translate from the plural to the singular and/or from the singular to the plural as is appropriate to the context and/or application. The various singular/plural permutations may be expressly set forth herein for sake of clarity.
Unless otherwise noted, technical terms are used according to conventional usage. Definitions of common terms in molecular biology can be found in Benjamin Lewin, Genes IX, published by Jones and Bartlet, 2008 (ISBN 0763752223); Kendrew et al. (eds.), The Encyclopedia of Molecular Biology, published by Blackwell Science Ltd., 1994 (ISBN 0632021829); and Robert A. Meyers (ed.), Molecular Biology and Biotechnology: a Comprehensive Desk Reference, published by VCH Publishers, Inc., 1995 (ISBN 9780471185710); and other similar references. The singular terms “a,” “an,” and “the” include plural referents unless context clearly indicates otherwise. Similarly, the word “or” is intended to include “and” unless the context clearly indicates otherwise. It is further to be understood that all base sizes or amino acid sizes, and all molecular weight or molecular mass values, given for nucleic acids or polypeptides are approximate, and are provided for description. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of this disclosure, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In case of conflict, the present specification, including explanations of terms, will control. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting.
Administration: To provide or give a subject one or more agents, such as an mRNA agent alone or included within a delivery vehicle such as a lipid nanoparticle (LNP) that treats one or more symptoms associated with a condition/disorder or disease including but not limited to viral infection/immune response to antigen, hypertension, stroke, or any disease or condition at least partly due to dysregulation of the Renin Angiotensin Aldosterone System (RAAS) by any effective route. Exemplary routes of administration include, but are not limited to, injection (such as subcutaneous, intramuscular, intradermal, intraperitoneal, and intravenous), oral, sublingual, rectal, transdermal, intranasal, vaginal and inhalation routes.
Agent: Any protein, nucleic acid molecule (including chemically modified nucleic acids), compound, antibody, small molecule, organic compound, inorganic compound, or other molecule of interest. Agent can include a therapeutic agent, a diagnostic agent or a pharmaceutical agent. A therapeutic or pharmaceutical agent is one that alone or together with an additional compound induces the desired response.
Contacting: Placement in direct physical association, including both a solid and liquid form. Contacting an agent with a cell can occur in vitro by adding the agent to isolated cells or in vivo by administering the agent to a subject.
Effective amount: An amount of agent that is sufficient to generate a desired response, such as reducing or inhibiting one or more signs or symptoms associated with a condition or disease (e.g., COVID-19 caused by infection with SARS-CoV-2). When administered to a subject, a dosage will generally be used that will achieve target tissue/cell/bloodstream concentrations. In some examples, an “effective amount” is one that treats one or more symptoms and/or underlying causes of any of a disorder or disease. In a representative example, an “effective amount” is a therapeutically effective amount in which the agent alone or with an additional therapeutic agent(s), induces the desired response such as reduction in one or more symptoms associated with COVID-19 or other coronavirus.
The symptoms and/or underlying cause of a disease, syndrome, viral infection, etc., do not need to be completely inhibited for the pharmaceutical preparation to be effective. For example, a pharmaceutical preparation may decrease the progression of the disease, syndrome, viral infection, etc., by a desired amount, for example by at least 10%, at least 20%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95%, at least 98%, or even at least 100%, as compared to the progression typical in the absence of the pharmaceutical preparation.
The disclosed therapeutic agents can be administered in a single dose, or in several doses, for example hourly, daily, weekly, monthly, yearly, during a course of treatment. The effective amount can be dependent on the subject being treated, the severity and type of the condition being treated, and the manner of administration.
Expression: The process by which the coded information of a gene is converted into an operational, non-operational, or structural part of a cell, such as the synthesis of a protein. Gene expression can be influenced by external signals. For instance, exposure of a cell to a hormone may stimulate expression of a hormone-induced gene. Different types of cells can respond differently to an identical signal. Expression of a gene also can be regulated anywhere in the pathway from DNA to RNA (mRNA) to protein. Regulation can include controls on transcription, translation, RNA transport and processing, degradation of intermediary molecules such as mRNA, or through activation, inactivation, compartmentalization or degradation of specific protein molecules after they are produced. In an example, expression, such as expression of a soluble form of angiotensin-converting enzyme 2 (ACE2), can be regulated to treat one or more signs or symptoms associated with viral infection, hypertension, etc., as discussed herein.
The expression of a nucleic acid molecule can be altered relative to a normal (wild type) nucleic acid molecule. Alterations in gene expression, such as differential expression, include but are not limited to: (1) overexpression; (2) underexpression; or (3) suppression of expression. Alterations in the expression of a nucleic acid molecule can be associated with, and in fact cause, a change in expression of the corresponding protein.
Protein expression can also be altered in some manner to be different from the expression of the protein in a normal (wild type) situation. This includes but is not necessarily limited to: (1) a mutation in the protein such that one or more of the amino acid residues is different; (2) a short deletion or addition of one or a few (such as no more than 10-20) amino acid residues to the sequence of the protein; (3) a longer deletion or addition of amino acid residues (such as at least 20 residues), such that an entire protein domain or sub-domain is removed or added; (4) expression of an increased amount of the protein compared to a control or standard amount; (5) expression of a decreased amount of the protein compared to a control or standard amount; (6) alteration of the subcellular localization or targeting of the protein; (7) alteration of the temporally regulated expression of the protein (such that the protein is expressed when it normally would not be, or alternatively is not expressed when it nominally would be); (8) alteration in stability of a protein through increased longevity in the time that the protein remains localized in a cell; and (9) alteration of the localized (such as organ or tissue specific or subcellular localization) expression of the protein (such that the protein is not expressed where it would normally be expressed or is expressed where it normally would not be expressed), each compared to a control or standard.
Luciferase: A generic term for a class of oxidative enzymes that produce bioluminescence. Found naturally in insect fireflies and in luminous marine and terrestrial microorganisms, luciferase is thus a light-producing enzyme. When expressed in mammalian or insect cells, the native signal sequences of these luciferases are functionally active, mediating their export from within the cell to the surrounding culture medium. Bioluminescence assays are conducted using culture media, whereupon the activity of the secreted luciferases provides a readout of the biological signaling event under study.
Patient: As used herein, the term “patient” includes human and non-human animals. The preferred patient for treatment is a human. “Patient” and “subject” are used interchangeably herein.
Pharmaceutically acceptable carriers: The pharmaceutically acceptable carriers (vehicles) useful in this disclosure are conventional. Remington's Pharmaceutical Sciences, by E. W. Martin, Mack Publishing Co., Easton, Pa., 19th Edition (1995), describes compositions and formulations suitable for pharmaceutical delivery of one or more agents, such as one or more 001 modulatory agents.
In general, the nature of the carrier will depend on the particular mode of administration being employed. For instance, parenteral formulations can include injectable fluids that include pharmaceutically and physiologically acceptable fluids such as water, physiological saline, balanced salt solutions, aqueous dextrose, glycerol or the like as a vehicle. In addition to biologically-neutral carriers, pharmaceutical agents to be administered can contain minor amounts of non-toxic auxiliary substances, such as wetting or emulsifying agents, preservatives, and pH buffering agents and the like, for example sodium acetate or sorbitan monolaurate, sodium lactate, potassium chloride, calcium chloride, and triethanolamine oleate.
Preventing, treating or ameliorating a disease: “Preventing” a condition/disease (such as COVID-19) refers to inhibiting the full development of a disease. “Treating” refers to a therapeutic intervention that ameliorates a sign or symptom of a condition/disease or pathological condition after it has begun to develop. “Ameliorating” refers to the reduction in the number or severity of signs or symptoms of a condition/disease.
Treating a disease: A therapeutic intervention that ameliorates a sign or symptom of a condition/disease or pathological condition including but not limited to an infection by a coronavirus, such as a sign or symptom of COVID-19. Treatment can induce remission or cure of a condition or slow progression, for example, in some instances can include inhibiting the full development of a disease, for example preventing development of adverse conditions associated with COVID-19. Prevention of a disease does not require a total absence of disease. For example, a decrease of at least 50%, or at least 40%, or at least 30%, or at least 20% can be sufficient.
Treating a condition/disease can be a reduction in severity of some or all clinical symptoms of the disease or condition, a reduction in the number of relapses of the disease or condition, an improvement in the overall health or well-being of the subject, by other parameters well known in the art that are specific to the particular disease or condition, and combinations of such factors. It may be understood that treating a disease as discussed is not limited to viral infection and hypertension, but can include others (e.g., other conditions/diseases where dysregulation of RAAS is involved, cancer, and the like) as disclosed herein.
Under conditions sufficient for: A phrase that is used to describe any environment that permits the desired activity. One example includes administering a disclosed agent to a subject under conditions sufficient to allow the desired activity. In particular examples, the desired activity is increasing the expression or activity of a soluble form of human ACE2 (hsACE2).
Wild-type: A strain, gene or characteristic which prevails among individuals in natural conditions, as distinct from an atypical mutant type.
SARS-COV-2, the pathogen of coronavirus disease 2019 (COVID-19), is a B-coronavirus that primarily enters through the airways and lungs. The envelope of SARS-COV-2 is decorated with homotrimeric spike (S) proteins that bind to the human angiotensin-converting enzyme 2 (hACE2) receptor expressed on the cell surface. The S protein is composed of S1 and S2 subunits responsible for viral attachment and fusion, respectively. Binding between the receptor-binding domain (RBD), which is located within the S1 subunit, and hACE2 triggers a cascade that accelerates cellular entry and viral membrane fusion. hACE2 is expressed in the lungs, heart, kidney, and intestine.
hACE2 functions as a key enzyme that participates in the Renin Angiotensin Aldosterone System (RAAS) responsible to maintain blood pressure. hACE2 is a carboxypeptidase that converts Angiotensin 1 to Angiotensin (1-9) or Angiotensin II to Angiotensin (1-7), both of which are vasodilators with cardioprotective effects through regulation of blood pressure. SARS-COV-2 interacts with hACE2 to enter and infect human airway epithelial cells, causing cytotoxic responses. It also can lead to development of pneumonia and cytokine storm, resulting in Acute Respiratory Distress Syndrome (ARDS) in severe cases. Once the virus infiltrates systemic circulation, it can dysregulate RAAS and immune system, cause endothelial cell damage, possibly target other tissues that express hACE2, and overall cause a multiorgan failure.
hACE2 consists of three segments: an extracellular segment that contains the peptidase domain where the RBD binds to, a transmembrane segment, and an intracellular segment. hACE2 can be cleaved by peptidases at the neck region of the extracellular segment, releasing a soluble form of hACE2 (hsACE2) which is enzymatically active. Since the RBD of SARS-COV-2 binds to the extracellular domain of hACE2, hsACE2 protein may be capable of reducing the viral infection through competitive inhibition. However, it is herein recognized that a relatively short half-life of the recombinant hsACE2 in the bloodstream would undesirably necessitate repeated administrations to ensure long-term circulation of the protein for days after exposure to SARS-COV-2. A short half-life of soluble ACE2 (<2 h in mouse) thus severely limits its time window of action and extended residence of hsACE2 is desirable to mitigate SARS-COV-2 mediated RAAS activation and hence to reduce inflammation-related injury of organs.
To overcome these challenges, herein disclosed is the use of LNPs to deliver in-vitro-transcribed messenger RNA (IVT mRNA) for rapid expression of hsACE2. This strategy may allow for rapid clearance of the captured virus while maintaining hsACE2 levels that can surveil circulation, clear the virus, and rescue the disrupted RAAS system. LNP-delivered mRNA as herein disclosed provides a transient yet high expression of protein with proper folding and post-translational modifications, but without risk of insertional mutagenesis as is associated with viral-based gene therapy. Unlike viral vectors, this platform technology can be repeatedly administered to sustain protein production until the infection subsides and cease of the treatment allows for clearance of hsACE2 within days, mitigating any off-target effects. In this way, expression of hsACE2 may prevent SARS-COV-2 from binding to cell surface receptors and block its entry. Discussed herein, an IVT mRNA was designed to encode the 1-740 amino acid sequence of hACE2 with a cleavable V5-epitope tag at the C-terminus.
Specifically, it is herein disclosed an mRNA-based nanotherapeutic that produces the decoy hsACE2 protein to potentially inhibit the SARS-COV-2 infection. A potent LNP formulation (eLNP) herein disclosed is shown to deliver IVT mRNA to the cytosol, where it is translated into hsACE2 protein more efficiently than the conventional LNPs (LNPs containing cholesterol but lacking β-sitosterol). It is herein disclosed that hsACE2 protein that was generated from the LNP-delivered mRNA efficiently binds to the RBD of SARS-COV-2 with a high affinity. Additionally, hsACE2 exerts a potent neutralizing effect on the pseudovirus decorated with the S protein of SARS-COV-2.
Disclosed herein, intravenous injection of eLNP/hsACE2 is shown to enable rapid and sustained expression of the circulating hsACE2 protein in the blood circulation within 2 h, peaking at 6 h and clearing gradually. Lung transfection with eLNP/hsACE2 is shown to illicit secretion of hsACE2 protein to the airway mucus in which the primary infection of SARS-COV-2 occurs. Unlike Fc fragment fused chimeric hsACE2 protein, the availability of mRNA-derived circulating hsACE2 is due to continuous generation of new protein from the liver. This provides an opportunity for rapid clearance of the virus while providing protection against the dysregulated RAAS system due to long term presence of newly made protein in the serum.
Another use of recombinant hsACE2 as herein disclosed may be to regulate blood pressure in the Angiotensin II-dependent hypertension. The prevalence of hypertension among the elderly in the United States is more than 60%, and this age-group is also at high risk of COVID-19. In this regard, it is conceivable that expression of enzymatically active hsACE2 from the mRNA therapy could protect COVID-19 patients with hypertension from aggravation of cardiovascular diseases as well as viral infection.
Furthermore, sustained expression of hsACE2 during infection could facilitate ACE2-mediated lung protection, reduce the incidence of ARDS by neutralizing SARS-COV-2, and prevent RAAS dysregulation. Additionally, hsACE2 may bind SARS-CoV-2 in the bloodstream and reduce its ability to infect other peripheral organs. It is possible that, by binding and thus masking the RBD, hsACE2 may decrease the amplitude of inflammatory response that causes multiorgan failure.
Accordingly, in one aspect, embodiments herein provide for a method of treating a patient suffering from a condition or disease, comprising administering to the patient an effective amount of a therapeutic agent comprising one or more RNA molecules encapsulated by a lipid nanoparticle. The treating of the patient may reduce at least one or more signs or symptoms associated with the condition or disease.
In an example of the method, the RNA is mRNA, and encodes for a soluble form of human angiotensin-converting enzyme 2 (hACE2) and/or one or more variations thereof. The mRNA encoding the soluble form of hACE2 and/or one or more variations thereof may comprise one or more sequences of SEQ ID NOs: 1-13 as disclosed herein.
In examples, the condition or disease is a viral infection. In a particular example, the viral infection is caused by severe acute respiratory syndrome coronavirus 2 (SARS-COV-2).
In examples, the lipid nanoparticle is comprised of an ionizable lipid, a PEG lipid, β-sitosterol, and a structural lipid. In some examples, the lipid nanoparticle does not include cholesterol.
In examples, the therapeutic agent is administered to the patient intravenously. In some examples, the therapeutic agent is administered to the patient by inhalation.
In an example of the method, an expression of the soluble form of hACE2 and/or one or more variations thereof is dependent on a dosage of the therapeutic agent. In a particular example, the expression of the soluble form of hACE2 and/or one or more variations thereof is time-dependent with a highest level of expression around 6 hours after the administration of the therapeutic agent.
In another aspect, embodiments provide for a therapeutic agent for treating a patient suffering from a viral infection, comprising a lipid nanoparticle comprised of each of an ionizable lipid, a PEG lipid, a sterol and/or substitution for the sterol, and a structural lipid; and one or more mRNA molecules encoding at least a portion of a soluble protein encapsulated within the lipid nanoparticle.
Examples of ionizable lipids include 2,2-dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane (DLin-KC2-DMA), (6Z,9Z,28Z,31Z)-Heptatriaconta-6,9,28,31-tetraen-19-yl 4-(dimethylamino)butanoate (DLin-MC3-DMA), 1,1′-((2-(4-(2-((2-(bis(2-hydroxydodecyl) amino)ethyl)(2-hydroxydodecyl)amino)ethyl)piperazin-1-yl) ethyl)azanediyl)bis(dodecan-2-ol) (C12-200), 3,6-bis(4-(bis(2-hydroxydodecyl) amino)butyl)piperazine-2,5-dione (cKK-E12), di((Z)-non-2-en-1-yl) 9-((4-(dimethylamino)butanoyl)oxy)heptadecanedioate (L319), (6Z,9Z,28Z,31Z)-19-(4-(dimethylamino) butyl)heptatriaconta-6,9,28,31-tetraen-19-ol (YSK12-C4), 1-methyl-4,4-bis (((9Z,12Z)-octadeca-9,12-dien-1-yl)oxy)piperidine (YSK05), 7-(4-(dipropylamino) butyl)-7-hydroxytridecane-1,13-diyl dioleate (CL4H6), heptadecan-9-yl 8-((2-hydroxyethyl)(6-oxo-6-(undecyloxy)hexyl)amino)octanoate (SM-102; Lipid 8), heptadecan-9-yl 8-((2-hydroxyethyl)(4-(nonyloxy)-4-oxobutyl)amino)octanoate (Lipid 9), heptadecan-9-yl 8-((2-hydroxyethyl)(8-(nonyloxy)-8-oxooctyl)amino)octanoate (Lipid 5), 6-[6-(2-hexyldecanoyloxy)hexyl-(4-hydroxybutyl)amino]hexyl 2-hexyldecanoate (ALC-0315), 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP), and 1,2-dioleoyl-3-dimethylammonium-propane (DODAP), 1,2-dioleyloxy-3-dimethylaminopropane (DODMA), N1, N3,N5-tris(3-(didodecylamino)-propyl)benzene-1,3,5-tricarboxamide (TT3), 3-((4,4-bis(octyloxy)butanoyl)oxy)-2-((((3-(diethylamino) propoxy)carbonyl)oxy)methyl)propyl (9E, 12E)-octadeca-9,12-dienoate (LP01), 2-(di((9E,12E)-octadeca-9,12-dien-1-yl)amino)ethyl 3-(4-methylpiperazin-1-yl)propanoate (Lipid 10).
Examples of PEG lipids include 1,2-dimyristoyl-rac-glycero-3-methoxypolyethylene glycol (DMG-PEG), 1,2-distearoyl-rac-glycero-3-methylpolyoxyethylene (DSG-PEG), 1,2-dipalmitoyl-rac-glycero-3-methylpolyoxyethylene (DPG-PEG), N-(Methylpolyoxyethylene oxycarbonyl)-1, 2-distearoyl-sn-glycero-3-phosphoethanolamine (DSPE-PEG), N-(Methylpolyoxyethylene oxycarbonyl)-1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (DPPE-PEG), N-(Methylpolyoxyethylene oxycarbonyl)-1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine (DMPE-PEG), 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy (polyethylene glycol)-2000] (14:0 PEG), 2-[(polyethylene glycol)-2000]-N,N-ditetradecylacetamide (ALC-0159).
Examples of structural lipids include 1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC), 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE), 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC), 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (DPPE), 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine (DMPE), 1,2-dioleoyl-sn-glycero-3-phospho-(1′-rac-glycerol) (DOPG).
Examples of sterols and/or substitutions for sterols include cholesterol, β-sitosterol, fucosterol, campesterol, stigmastanol, dihydrocholesterol, ent-cholesterol, epi-cholesterol, desmosterol, cholestanol, cholestanone, cholestenone, cholesteryl-2′-hydroxyethyl ether, cholesteryl-4′-hydroxybutyl ether, 3β[N-(N′N′-dimethylaminoethyl) carbamoyl cholesterol (DC-Chol), 24(S)-hydroxycholesterol, 25-hydroxycholesterol, 25(R)-27-hydroxycholesterol, 22-oxacholesterol, 23-oxacholesterol, 24-oxacholesterol, cycloartenol, 22-ketosterol, 20-hydroxysterol, 7-hydroxycholesterol, 19-hydroxycholesterol, 22-hydroxycholesterol, 25-hydroxycholesterol, 7-dehydrocholesterol, 5α-cholest-7-en-3β-ol, 3,6,9-trioxaoctan-1-ol-cholesteryl-3e-ol, dehydroergosterol, dehydroepiandrosterone, lanosterol, dihydrolanosterol, lanostenol, lumisterol, sitocalciferol, calcipotriol, coprostanol, cholecalciferol, lupeol, ergocalciferol, 22-dihydroegocalciferol, ergosterol, brassicasterol, tomatidine, tomatine, ursolic acid, cholic acid, chenodeoxycholic acid, zymosterol, diosgenin, fucosterol, fecosterol, or fecosterol, or a salt or ester thereof, e.g., sodium cholate.
In an example, the lipid nanoparticle does not include cholesterol.
In some examples, the mRNA encodes for a soluble form of human angiotensin-converting enzyme 2 (hACE2) and/or one or more variations thereof. The mRNA encoding the soluble form of hACE2 and/or one or more variations thereof may comprise one or more sequences of SEQ ID NOs: 1-13 as disclosed herein.
In some examples, the viral infection is caused by severe acute respiratory syndrome coronavirus 2 (SARS-COV-2).
In some examples, the soluble form of hACE2 and/or one or more variations thereof may bind to a receptor-binding domain of a spike protein of the virus with a high affinity.
In some examples, the soluble form of hACE2 and/or one or more variations thereof may reduce the viral infection through competitive inhibition.
In another aspect, embodiments provide for a method of treating a patient suffering from an infection caused by severe acute respiratory syndrome coronavirus 2 (SARS-COV-2), comprising administering to the patient an effective amount of a therapeutic agent comprising one or more mRNA molecules encoding at least a portion of a soluble form of human angiotensin-converting enzyme 2 (hACE2) encapsulated by a lipid nanoparticle, the lipid nanoparticle including an ionizable lipid, a PEG lipid, β-sitosterol, and a structural lipid. The treating of the patient may reduce at least one or more signs or symptoms associated with the infection.
In some examples, the therapeutic agent is administered to the patient intravenously in a single dose or in multiple doses.
In some examples, the therapeutic agent is administered to the patient by inhalation in a single dose or in multiple doses.
In examples, the one or more mRNA molecules encoding the soluble form of hACE2 may comprise one or more sequences of SEQ ID NOs: 1-13 as disclosed herein.
In examples, the soluble form of hACE2 may bind to a receptor-binding domain of a spike protein of SARS-COV-2 and reduce the one or more signs or symptoms associated with the infection through a competitive inhibition of SARS-COV-2.
While in examples a LNP is used as a delivery vector, it is within the scope of this disclosure that additionally or alternatively other/another delivery vector may be used (e.g., lentiviral vector, plasmid expression vector, and the like).
Fluc mRNA and hsACE2 variant mRNA were purchased from TriLink Biotechnologies (CA, USA). Uridine of Fluc mRNA was fully substituted with 5-methoxyuridine, and uridine and cytidine of hsACE2 mRNA were fully substituted with pseudouridine and 5-methyl-cytidine, respectively. Cholesterol and β-sitosterol were purchased from Sigma-Aldrich. DMG-PEG2K was bought from NOF America. DLin-MC3-DMA and DSPC were obtained from BioFine International Inc. and Avanti Polar Lipids, Inc., respectively.
LNPs composed of DLin-MC3-DMA, Cholesterol or β-sitosterol, DMG-PEG2K, DSPC, and mRNA were prepared using microfluidic mixing. Briefly, mRNA was diluted in sterile 50 mM citrate buffer, and lipid components were prepared in 100% ethanol at 50:38.5:1.5:10 molar ratio. The lipid and mRNA solutions were mixed using the NanoAssemblr Benchtop at a 1:3 ratio, followed by overnight dialysis against sterile PBS using a Slide-A-Lyzer G2 cassette with 10,000 Da molecular-weight-cut-off (Thermo Fisher Scientific). Dialyzed LNP solutions were concentrated using Amicon® Ultra centrifugal filter units with 10,000 Da molecular-weight-cut-off (Millipore). Hydrodynamic size and PDI of the LNPs were measured in dynamic light scattering using the Zetasizer Nano ZSP (Malvern Instruments, UK). mRNA encapsulation was assayed using a Quant-iT™ RiboGreen® RNA Assay kit (Thermo Fisher Scientific) and a multimode microplate reader (Tecan Trading AG, Switzerland).
293T, Calu-3, Hep G2 cell lines were kindly gifted from Prof. Sadik Esener (OHSU), Prof. Kelvin MacDonald (OHSU), and Prof. Conroy Sun (OSU), respectively. 293T/17 cell line was purchased from ATCC (CRL-11268). 293T, 293T/17 and Hep G2 cells were cultured in DMEM supplemented with 10% heat-inactivated FBS and 1% penicillin/streptomycin. Calu-3 cells were cultured in MEM supplemented with 10% heat-inactivated FBS, 1% penicillin/streptomycin, non-essential amino acids, and sodium pyruvate.
In Vitro Fluc mRNA Transfection Assay
For in vitro Fluc mRNA transfection assays, cells were seeded on a white 96 well plate at 4×103 cells/well for 293T and Hep G2 cells or at 104 cells/well for Calu-3, followed by overnight incubation for cell attachment. Cells were incubated with nanoparticles encapsulating Fluc mRNA and analyzed for cell viability and luciferase activity with the ONE-Glo™+Tox luciferase reporter and cell viability assay kit (Promega) using a multimode microplate reader.
In Vitro hsACE2 mRNA Transfection
For in vitro mRNA transfection for hsACE2 production, cells were seeded on a 12-well plate at 3×105 cells per well and allowed to attach for overnight. Cells were treated with LNPs encapsulating hsACE2 mRNA for 24 h, and culture media were centrifuged at 500 g for 10 min at 4° C. Cell-free media was supplemented with protease and phosphatase inhibitor cocktail (Thermo Fisher Scientific) and used for downstream experiments. Besides culture media, transfected cells were lysed using RIPA buffer containing protease and phosphatase inhibitor cocktail, followed by centrifugation at 16,000 g for 30 min at 4° C. Supernatant lysate was collected for western blot.
Detection of hsACE2 Protein by Western Blot
Production of hsACE2 protein upon transfection was detected by western blot. In brief, total protein concentration of sample was quantified using a Micro BCA protein assay kit (Thermo Fisher Scientific) according to the manufacturer's instruction. Cell-free supernatants or cell lysates containing 30 μg of total protein were prepared in 1× LDS sample buffer under reducing conditions, denatured at 70° C. for 10 min, and run on 4-12% Bis-Tris gels or 4-20% Tris-glycine gels, followed by dry transfer to PVDF membrane using iBlot 2 Dry Blotting System (Thermo Fisher Scientific). The blots were blocked using 5% skim milk for 1 h at room temperature. The primary antibodies used were: rabbit monoclonal anti-V5 tag at 1:1,000 (Cell Signaling Technology, 13202), rabbit monoclonal anti-6x-His tag at 1:1,000 (Thermo Fisher Scientific, MA5-33032), and mouse monoclonal anti-β-actin at 1:10,000 (R&D Systems, MAB8929). The secondary antibodies used were goat polyclonal anti-rabbit HRP (Jackson ImmunoResearch, 111-035-003) and anti-mouse HRP (115-035-003). For detection and documentation, we used SuperSignal™ West Pico Plus Chemiluminescent Substrate and myECL imager (Thermo Fisher Scientific). After chemiluminescent imaging, blots were further stained using GelCode™ Blue Safe Protein Stain (Thermo Fisher Scientific) according to the manufacturer's instruction.
Co-Immunoprecipitation of hsACE2 and SARS-COV-2 Spike RBD
Cell free media from untreated or transfected 293T cell culture was prepared. 1 μg of SARS-COV-2 Spike RBD-His (Sino Biological) was inoculated to 400 μl of cell free media, followed by overnight incubation at 4° C. with rotation. Subsequent co-immunoprecipitation was conducted using Dynabeads™ Protein G Immunoprecipitation kit (Thermo Fisher Scientific) according to the manufacturer's instruction. Briefly, cell-free media inoculated with the spike RBD were incubated with antibody bound Dynabeads for 20 min at room temperature with rotation. The antibodies used for pull-down were mouse monoclonal anti-His tag (sc-8036) or anti-V5 tag (sc-81594) antibody (Santa Cruz Biotechnology). Following three washes with PBS, samples were eluted using elution buffer and denatured using LDS sample buffer and reducing agent for western blot.
All animal studies were conducted at Oregon Health and Sciences University and approved by the Institutional Animal Care and Use Committee (IACUC, IP00001707).
In Vivo Fluc mRNA Transfection via Intravenous Administration
Female BALB/c mice (8-12 weeks) were sedated using isoflurane, and LNPs encapsulating Fluc mRNA were intravenously administered via tail vein. At predetermined time points post-administration, 200 μl of D-luciferin substrate was intraperitoneally injected to the mice 10 minutes prior to bioluminescence imaging (150 mg/kg). Image acquisition and analysis were performed using the IVIS® Lumina XRMS and the manufacturer's software (PerkinElmer).
In vivo hsACE2 mRNA Transfection via Intravenous Administration
Female BALB/c mice (8-12 weeks) were sedated using isoflurane, and LNPs encapsulating hsACE2 mRNA were administered to animals via tail vein. At predetermined time points post-administration, whole blood was collected using cardiac puncture or submandibular bleeding. The collected blood samples were processed to sera using serum-separating tubes (BD). The separated sera were used for downstream experiments. Mouse liver were sterilely harvested and homogenized using a handheld tissue homogenizer.
In vivo mRNA transfection via Intratracheal Instillation
Intratracheal instillation was performed according to established protocols. Female BALB/c mice (8-12 weeks) were anesthetized using ketamine/xylazine cocktail. Anesthetized animals were leaned over intubation stand (Kent Scientific), and their vocal cords were directly visualized using an otoscope with a 2-mm speculum (Welch Allyn). A flexible guide wire was advanced through the vocal cords to trachea. Once the wire was located within trachea, a 20 G catheter was passed over the wire and the wire was removed. To administer LNPs, a gas tight syringe with a 22 G blunt needle (Hamilton) was filled with LNPs containing mRNA. The syringe were inserted through the catheter and LNPs encapsulating mRNA was administered to lungs, followed by 100 μl of air to distribute the LNP solution throughout the lungs.
After intratracheal instillation, euthanize the animals by CO2 asphyxia at an appropriate time post-administration. The trachea was surgically exposed and intubated with a 20 G catheter. The mouse lungs lavage was performed three times with 0.8 ml of prewarm PBS to collect BALF. The collected BALF was centrifuged at 500 g for 10 min at 4° C. The supernatants were supplemented with protease and phosphatase inhibitor cocktail and used for downstream experiments.
Immunoprecipitation of hsACE2 from BALF
Immunoprecipitation of hsACE2 from BALF was conducted using Dynabeads™ Protein G Immunoprecipitation kit (Thermo Fisher Scientific) according to the manufacturer's instruction. The collected BALF was incubated with Dynabeads having anti-V5 tag antibody for 20 min at room temperature with rotation. Following three washes with PBS, samples were eluted using elution buffer and denatured using LDS sample buffer and reducing agent for western blot.
Lentiviral reporter plasmid pHAGE-CMV-Luc2-IRES-ZsGreen-W (BEI Resources, NR-52516) and helper plasmids pHDM-Hgpm2 (BEI Resources, NR-52517), pHDM-tatb (BEI Resources, NR-52518), pRC-CMV-rev1b (BEI Resources, NR-52519), and hACE2 containing pHAGE2-EF1a ACE2 (BEI Resources, NR-52512) were kindly provided by Jesse D. Bloom. pcDNA3.1-SARS2-Spike (Addgene, #145032) was a gift from Fang Li. pMD2.G containing VSV-G envelope protein (Addgene, #12259) and pCMVΔR8.2 (Addgene, #12263) were a gift from Didier Trono.
In order to create 293T/17 cells overexpressing hACE2, we transduced the hACE2 gene to 293T/17 cells using a lentiviral vector. To produce the lentivirus packaging hACE2 gene, 293T/17 cells were transfected with pCMVΔR8.2, pMD2.G, and pHAGE2-EF1aInt-ACE2-WT using lipofectamine 2000. After 4 h, the cells were replenished with the fresh growth media. After 48 h, the lentiviral particles were collected, filtered, and used immediately to transduce 293T/17 cells. After 48 h transduction, the cells were harvested, passaged with the growth media, and referred to as 293T-hACE2. To confirm the expression of hACE2 after transduction, 293T-hACE2 cells were harvested and lysed using RIPA buffer containing protease and phosphatase inhibitor cocktail. Cell lysates was processed to perform western blot analysis as described above. To probe hACE2, anti-ACE2 antibody (Santa Cruz Biotechnology, sc-390851) and anti-mouse HRP were used as the primary and secondary antibodies at 1:200 and 1:2,000, respectively.
293T/17 cells were seeded in T-75 flask at 5×104 cells/flask and grown for 18 h. Cells were co-transfected with 7.8 μg of the lentiviral reporter, 1.7 μg of each helper plasmids, and either 7.8 μg of pcDNA3.1-SARS2-Spike (Spike), 2.5 μg of pMD2.G (VSV-G), or no plasmid (No envelope) using lipofectamine 3000 as instructed by manufacture. After 48 h, pseudoviruses were collected, filtered, aliquoted into single-use vials, and stored at −80° C.
293T-hACE2 cells were seeded at 104 cells/well in white, 96-well plates and grown for 18 h. Cells were transduced in triplicate with a 4-point, 1:3 serial dilution of the pseudoviruses with polybrene at a final concentration of 5 μg/ml. Polybrene was not included in the VSV-G pseudovirus-treated wells. After 48 h, cell viability and luciferase activity were assessed with the ONE-Glo™M+Tox luciferase reporter and cell viability assay kit.
To make conditioned media containing hsACE2, 293T/17 cells were seeded into T-75 flasks at 5×104 cells/flask and grown 18 h. Cells were transfected with 22 μg mRNA or equivalent volume of PBS using lipofectamine 3000. After incubation for 6 h, cells were washed with PBS and the complete media was added. After 24 h, media was harvested, filtered with 0.45 um filter, and concentrated in a spin column with Amicon® Ultra centrifugal filter units with 10,000 Da molecular-weight-cut-off at 4,000 g for 30 minutes. The concentrated, conditioned media was brought up to 2 ml with serum-free media and used immediately in the neutralization assay.
For neutralization assay, 293T-hACE2 cells were seeded into white 96-well plates at 2×104 cells/well and grown for 24 h. Pseudovirus was serially diluted as before. The conditioned media was added to the serial dilutions at ratio of 2:3 for conditioned media: pseudovirus, and incubated at 4° C. for 1 h. Polybrene was added as before. Media was removed from the 96-well plates and cells were transduced as before. After 48 h, cell viability and luciferase activity were assessed with the ONE-Glo™M+Tox luciferase reporter and cell viability assay kit.
Design of mRNA-based Nanotherapeutic to Treat SARS-COV-2 Infection
LNPs were used to deliver in-vitro-transcribed messenger RNA (IVT mRNA) for rapid expression of hsACE2.
Characterization of hsACE2 Expression
To confirm whether the designed IVT mRNA produces hsACE2 protein after transfection, 293T cells were transfected with hsACE2 mRNA using lipofectamine 3000. hsACE2 protein was detected in cell-free conditioned media (
Intracellular delivery of mRNA, especially in vivo, may be more efficient with a delivery vector (e.g., LNP). LNPs may be comprised of at least four lipids: (1) ionizable lipid, (2) PEG lipid, (3) cholesterol, and (4) structural lipid (
It was found that eLNP encapsulating firefly luciferase (Fluc) mRNA generated significantly higher luciferase expressions than LNP (p<0.01) with a dose-dependent manner in 293T cells without decreasing cell viability, indicating improved transfection efficiency (
Invasion of SARS-COV-2 in ACE2-expressing airway epithelial cells maybe followed by infection of endothelial cells, which may thereby lead to endotheliitis. Vascular leakage caused by damaged endothelial cells may provide the virus with a putative gateway to the circulatory system and other ACE2-expressing organs.
Therefore, blockade of influx of the virus from the blood circulation to peripheral organs may prevent multisystem organ failure.
For these reasons, in vivo delivery of eLNP/hsACE2 was evaluated for production, secretion, and blood circulation of hsACE2 protein. Intravenously administered LNPs are typically destined to transfect hepatocytes owing to the interaction between LNP and apolipoprotein E. Thus, it was theorized that the liver may serve as a factory for protein production upon hsACE2 mRNA transfection. To assess this in vitro, the human liver cell line, Hep G2, was transfected with LNPs. eLNP/Fluc yielded more luciferase expression than LNP/Fluc in Hep G2 cells (
In the Hep G2 cell lysates, two discrete hsACE2 bands were observed. We assume the band at approximately 125 kDa represented the fully-glycosylated form and the band at 100 kDa represented the pre- or partially-glycosylated form (
It was next examined whether the eLNPs lead to improved protein production in vivo. It was shown that eLNP/Fluc induced strong bioluminescent signals in the livers of BALB/c mice after intravenous injection of LNPs at 4 hours post-injection, which decreased with time (
eLNP/hsACE2 was injected in BALB/c mice and mouse sera was collected up to 72 h post-administration with predetermined time intervals. Notably, hsACE2 appeared in the mouse sera as early as 2 h post-injection (
LNP-Delivered hsACE2 mRNA to the Lungs Results in Production of Mucosal hsACE2 Protein
Airway and lungs are the first target organs where the virus attacks and are highly vulnerable organs due to high levels of hACE2 expression. Having hsACE2 protein as a decoy on the airway epithelium could mitigate viral infection at early stages of disease progression. Therefore, the ability of LNPs to produce mucosal hsACE2 was assessed. Consistent with the previous results, eLNP/Fluc exerted significantly greater levels of transfection than LNP/Fluc in Calu-3, a human lung epithelial cell line (
hsACE2 Protein Binds the RBD and Prevents S1-Pseudovirus Infection
Next, it was evaluated whether there was a physical interaction of hsACE2 protein with the RBD of SARS-COV-2. 293T cells were transfected with eLNP/hsACE2 for 24 h, and untreated cells served as controls. Cell-free conditioned media was collected and inoculated with either PBS or the recombinant His-tagged RBD (
mRNA Sequence of the hsACE2 (SEQ ID NO: 1)
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes the 1-740 amino acid sequence of hACE2 protein.
mRNA sequence of the hsACE2 variant (1) (SEQ ID NO: 2)
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The sequence corresponding to the TEV site is underlined and is gag aac uug uac uuc caa ucc. The sequence following the TEV site and before the stop codon corresponds to the V5 tag, and is ggu aag ccu auc ccu aac ccu cuc cuc ggu cuc gau ucu acg. The remaining sequence encodes the 1-740 amino acid sequence of hACE2 protein.
mRNA Sequence of the hsACE2 Variant (2) (SEQ ID NO: 3)
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes the 1-357 amino acid sequence of hACE2 protein. This truncated variant produced from the above sequence may have the increased accessibility to the spike protein due to a small size, potentially improving binding affinity.
mRNA Sequence of the hsACE2 Variant (3) (SEQ ID NO: 4)
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes the 1-740 amino acid sequence of hACE2 protein with two mutations. Two mutations are underlined and in bold, and are r105a>c and r109g>a, resulting in pGlu35Asp and pGlu37Lys, respectively. These mutations are incorporated to increase the strength of hydrogen bonds formed with Gln493 and Tyr505 of virus spike protein, which may increase the binding affinity.
mRNA Sequence of the hsACE2 Variant (4) (SEQ ID NO: 5)
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes the 1-357 amino acid sequence of hACE2 protein with two mutations. This truncated variant produced from the above sequence may have the increased accessibility to the spike protein due to a small size, potentially resulting in improved binding affinity. Two mutations are underlined and in bold, and are r105a>c and r109g>a, resulting in pGlu35Asp and pGlu37Lys, respectively. These mutations are incorporated to increase the strength of hydrogen bonds formed with Gln493 and Tyr505 of virus spike protein, which may increase the binding affinity.
Example 10
mRNA Sequence of the hsACE2 Variant (5) (SEQ ID NO: 6)
agc ggc agc ggc ggc agc ggc ggc ggc agc aug
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes a dimer consisting of two sets of the 1-357 amino acid sequence of hACE2 protein connected by a 16-mer linker sequence. The sequence corresponding to the 16-mer linker is underlined, and is ggc ggc ggc agc ggc ggc agc ggc agc ggc ggc agc ggc ggc ggc agc. The sequence corresponding to the dimer contains four mutations. Four mutations are underlined and in bold, and are r105a>c, r109g>a, r1224a>c, and r1228g>a, resulting in pGlu35Asp, pGlu37Lys, pGlu408Asp, and pGlu410Lys, respectively. The mutations are incorporated to increase the strength of hydrogen bonds formed with Gln493 and Tyr505 of virus spike protein, which may increase the binding affinity. This dimer consisting of two truncated variant produced from the above sequence is bivalent, and therefore has the increased avidity. This dimer may have the increased accessibility to the spike protein due to a small size, potentially improving binding affinity.
mRNA Sequence of the hsACE2 Variant (6) (SEQ ID NO: 7)
agc ggc agc ggc ggc agc ggc ggc ggc agc aug
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes a dimer consisting of two sets of the 1-357 amino acid sequence of hACE2 protein connected by a 16-mer linker sequence. The sequence corresponding to the 16-mer linker is underlined, and is ggc ggc ggc agc ggc ggc agc ggc agc ggc ggc agc ggc ggc ggc agc. This dimer consisting of two truncated variant produced from the above sequence is bivalent, and therefore has the increased avidity. This dimer may have the increased accessibility to the spike protein due to a small size, potentially improving binding affinity.
mRNA Sequence of the hsACE2 Variant (7) (SEQ ID NO: 8)
ggc ggc aug uca agc ucu ucc ugg cuc cuu cuc
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes a dimer consisting of two sets of the 1-357 amino acid sequence of hACE2 protein connected by a 8-mer linker sequence. The sequence corresponding to the 8-mer linker is underlined, and is ggc ggc agc ggc ggc agc ggc ggc. The sequence corresponding to the dimer contains four mutations. Four mutations are underlined and in bold, and are r105a>c, r109g>a, r1200a>c, and r1204g>a, resulting in pGlu35Asp, pGlu37Lys, pGlu400Asp, and pGlu402Lys, respectively. The mutations are incorporated to increase the strength of hydrogen bonds formed with Gln493 and Tyr505 of virus spike protein, which may increase the binding affinity. This dimer consisting of two truncated variant produced from the above sequence is bivalent, and therefore has the increased avidity. This dimer may have the increased accessibility to the spike protein due to a small size, potentially improving binding affinity.
mRNA sequence of the hsACE2 variant (8) (SEQ ID NO: 9)
ggc ggc aug uca agc ucu ucc ugg cuc cuu cuc
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes a dimer consisting of two sets of the 1-357 amino acid sequence of hACE2 protein connected by a 8-mer linker sequence. The sequence corresponding to the 8-mer linker is underlined, and is ggc ggc agc ggc ggc agc ggc ggc. This dimer consisting of two truncated variant produced from the above sequence is bivalent, and therefore has the increased avidity. This dimer may have the increased accessibility to the spike protein due to a small size, potentially improving binding affinity.
mRNA Sequence of the hsACE2 Variant (9) (SEQ ID NO: 10)
uau auu ccg gaa gcg ccg cgc gau ggc cag gcg
uau gug cgc aaa gau ggc gaa ugg gug cug cug
agc acc uuu cug uaa
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes the 1-357 amino acid sequence of hACE2 protein, followed by a 5-mer linker-foldon fusion protein. This truncated variant produced from the above sequence may have the increased accessibility to the spike protein due to a small size, potentially resulting in improved binding affinity. The sequence corresponding to the 5-mer linker-foldon fusion protein is underlined, and is gaa geg geg geg aaa ggc uau auu ccg gaa geg ccg cgc gau ggc cag geg uau gug cgc aaa gau ggc gaa ugg gug cug cug age acc uuu cug. This variant containing the sequence of the foldon domain, which is derived from the fibritin protein of bacteriophage T4, forms a trimer, which becomes trivalent and therefore has the increased avidity to the viral spike protein.
mRNA Sequence of the hsACE2 Variant (10) (SEQ ID NO: 11)
uau auu ccg gaa gcg ccg cgc gau ggc cag gcg
uau gug cgc aaa gau ggc gaa ugg gug cug cug
agc acc uuu cug uaa
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes the 1-357 amino acid sequence of hACE2 protein with two mutations, followed by a 5-mer linker-foldon fusion protein. Two mutations are underlined, and are r105a>c and r109g>a, resulting in pGlu35Asp and pGlu37Lys, respectively. These mutations are incorporated to increase the strength of hydrogen bonds formed with Gln493 and Tyr505 of virus spike protein, which may increase the binding affinity. This truncated variant produced from the above sequence may have the increased accessibility to the spike protein due to a small size, potentially resulting in improved binding affinity. The sequence corresponding to the 5-mer linker-foldon fusion protein is underlined, and is gaa geg geg geg aaa ggc uau auu ccg gaa geg ccg cgc gau ggc cag geg uau gug cgc aaa gau ggc gaa ugg gug cug cug agc acc uuu cug. This variant containing the sequence of the foldon domain, which is derived from the fibritin protein of bacteriophage T4, forms a trimer, which becomes trivalent and therefore has the increased avidity to the viral spike protein.
mRNA Sequence of the hsACE2 Variant (11) (SEQ ID NO: 12)
ccg gaa gcg ccg cgc gau ggc cag gcg uau gug
cgc aaa gau ggc gaa ugg gug cug cug agc acc
uuu cug uaa
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes the 1-740 amino acid sequence of hACE2 protein, followed by a 5-mer linker-foldon fusion protein. The sequence corresponding to the 5-mer linker-foldon fusion protein is underlined, and is gaa geg geg geg aaa gge uau auu ccg gaa geg ccg cgc gau ggc cag gcg uau gug cgc aaa gau ggc gaa ugg gug cug cug agc acc uuu cug. This variant containing the sequence of the foldon domain, which is derived from the fibritin protein of bacteriophage T4, forms a trimer, which becomes trivalent and therefore has the increased avidity to the viral spike protein.
mRNA Sequence of the hsACE2 Variant (12) (SEQ ID NO: 13)
ccg gaa gcg ccg cgc gau ggc cag gcg uau gug
cgc aaa gau ggc gaa ugg gug cug cug agc acc
uuu cug uaa
With reference to the above sequence, the first three nucleotides (aug) and the last three nucleotides (uaa) are start and stop codons, respectively. The last three nucleotides can be replaced to uag and uga. The remaining sequence encodes the 1-740 amino acid sequence of hACE2 protein with two mutations, followed by a 5-mer linker-foldon fusion protein. Two mutations are underlined, and are r105a>c and r109g>a, resulting in pGlu35Asp and pGlu37Lys, respectively. These mutations are incorporated to increase the strength of hydrogen bonds formed with Gln493 and Tyr505 of virus spike protein, which may increase the binding affinity. The sequence corresponding to the 5-mer linker-foldon fusion protein is underlined, and is gaa gcg gcg gcg aaa ggc uau auu ccg gaa geg ccg cgc gau ggc cag gog uau gug cgc aaa gau ggc gaa ugg gug cug cug agc acc uuu cug. This variant containing the sequence of the foldon domain, which is derived from the fibritin protein of bacteriophage T4, forms a trimer, which becomes trivalent and therefore has the increased avidity to the viral spike protein.
With reference to the above Examples 5-17, it may be understood that the present disclosure also encompasses the amino acid sequences corresponding to each of the mRNA sequences disclosed.
It may be understood that the methods laid out in this disclosure are not limited to soluble forms of the hACE2 protein, but encompass other receptors (or portions/variations thereof) which are recognized by viral proteins, bacterial proteins, and the like, capable of causing disease or other health complications via their interaction with such receptors.
Although certain embodiments have been illustrated and described herein, it will be appreciated by those of ordinary skill in the art that a wide variety of alternate and/or equivalent embodiments or implementations calculated to achieve the same purposes may be substituted for the embodiments shown and described without departing from the scope. Those with skill in the art will readily appreciate that embodiments may be implemented in a very wide variety of ways. This application is intended to cover any adaptations or variations of the embodiments discussed herein. Therefore, it is manifestly intended that embodiments be limited only by the claims and the equivalents thereof.
The present application claims priority to U.S. Provisional Patent Application No. 63/159,032, which was filed Mar. 10, 2021, the disclosure of which is hereby incorporated by reference.
This invention was made with government support under 1R01HL146736-01, awarded by the National Institutes of Health. The government has certain rights to the invention.
Filing Document | Filing Date | Country | Kind |
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PCT/US2022/019705 | 3/10/2022 | WO |
Number | Date | Country | |
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63159032 | Mar 2021 | US |