Novel human polynucleotides and polypeptides encoded thereby

Information

  • Patent Application
  • 20040009474
  • Publication Number
    20040009474
  • Date Filed
    May 24, 2001
    23 years ago
  • Date Published
    January 15, 2004
    20 years ago
Abstract
The present invention provides ORFX, a novel isolated polypeptide, as well as a polynucleotide encoding ORFX and antibodies that immunospecifically bind to ORFX or any derivative, variant, mutant, or fragment of the ORFX polypeptide, polynucleotide or antibody. The invention additionally provides methods in which the ORFX polypeptide, polynucleotide and antibody are used in detection and treatment of a broad range of pathological states, as well as to others uses.
Description


BACKGROUND OF THE INVENTION

[0002] The invention relates generally to nucleic acids and polypeptides encoded thereby, and methods of using these nucleic acids and polypeptides.



SUMMARY OF THE INVENTION

[0003] The invention is based in part on the discovery of nucleic acids that include open reading frames encoding novel polypeptides, and on the polypeptides encoded thereby. The nucleic acids and polypeptides are collectively referred to herein as “ORFX”.


[0004] Accordingly, in one aspect, the invention provides an isolated nucleic acid molecule (SEQ ID NO:2n−1, wherein n is an integer between 1-4534), that encodes novel polypeptide, or a fragment, homolog, analog or derivative thereof. The nucleic acid can include, e.g., a nucleic acid sequence encoding a polypeptide at least 85% identical to a polypeptide comprising the amino acid sequences of SEQ ID NO:2n, wherein n is an integer between 1-4534. The nucleic acid can be, e.g., a genomic DNA fragment, or a cDNA molecule.


[0005] Also included in the invention is a vector containing one or more of the nucleic acids described herein, and a cell containing the vectors or nucleic acids described herein.


[0006] The invention is also directed to host cells transformed with a recombinant expression vector comprising any of the nucleic acid molecules described above.


[0007] In another aspect, the invention includes a pharmaceutical composition that includes an ORFX nucleic acid and a pharmaceutically acceptable carrier or diluent.


[0008] In a further aspect, the invention includes a substantially purified ORF polypeptide, e.g., any of the ORFX polypeptides encoded by an ORFX nucleic acid, and fragments, homologs, analogs, and derivatives thereof. The invention also includes a pharmaceutical composition that includes a ORFX polypeptide and a pharmaceutically acceptable carrier or diluent.


[0009] In a still a further aspect, the invention provides an antibody that binds specifically to an ORFX polypeptide. The antibody can be, e.g., a monoclonal or polyclonal antibody, and fragments, homologs, analogs, and derivatives thereof. The invention also includes a pharmaceutical composition including ORFX antibody and a pharmaceutically acceptable carrier or diluent. The invention is also directed to isolated antibodies that bind to an epitope on a polypeptide encoded by any of the nucleic acid molecules described above.


[0010] The invention also includes kits comprising any of the pharmaceutical compositions described above.


[0011] The invention further provides a method for producing an ORFX polypeptide by providing a cell containing a ORFX nucleic acid, e.g., a vector that includes a ORFX nucleic acid, and culturing the cell under conditions sufficient to express the ORFX polypeptide encoded by the nucleic acid. The expressed ORFX polypeptide is then recovered from the cell. Preferably, the cell produces little or no endogenous ORFX polypeptide. The cell can be, e.g., a prokaryotic cell or eukaryotic cell.


[0012] The invention is also directed to methods of identifying an ORFX polypeptide or nucleic acids in a sample by contacting the sample with a compound that specifically binds to the polypeptide or nucleic acid, and detecting complex formation, if present.


[0013] The invention further provides methods of identifying a compound that modulates the activity of a ORFX polypeptide by contacting ORFX polypeptide with a compound and determining whether the ORFX polypeptide activity is modified.


[0014] The invention is also directed to compounds that modulate ORFX polypeptide activity identified by contacting a ORFX polypeptide with the compound and determining whether the compound modifies activity of the ORFX polypeptide, binds to the ORFX polypeptide, or binds to a nucleic acid molecule encoding a ORFX polypeptide.


[0015] In a another aspect, the invention provides a method of determining the presence of or predisposition of an ORFX-associated disorder in a subject. The method includes providing a sample from the subject and measuring the amount of ORFX polypeptide in the subject sample. The amount of ORFX polypeptide in the subject sample is then compared to the amount of ORFX polypeptide in a control sample. An alteration in the amount of ORFX polypeptide in the subject protein sample relative to the amount of ORFX polypeptide in the control protein sample indicates the subject has a tissue proliferation-associated condition. A control sample is preferably taken from a matched individual, i.e., an individual of similar age, sex, or other general condition but who is not suspected of having a tissue proliferation-associated condition. Alternatively, the control sample may be taken from the subject at a time when the subject is not suspected of having a tissue proliferation-associated disorder. In some embodiments, the ORFX is detected using a ORFX antibody.


[0016] In a further aspect, the invention provides a method of determining the presence of or predisposition of an ORFX-associated disorder in a subject. The method includes providing a nucleic acid sample, e.g., RNA or DNA, or both, from the subject and measuring the amount of the ORFX nucleic acid in the subject nucleic acid sample. The amount of ORFX nucleic acid sample in the subject nucleic acid is then compared to the amount of an ORFX nucleic acid in a control sample. An alteration in the amount of ORFX nucleic acid in the sample relative to the amount of ORFX in the control sample indicates the subject has a tissue proliferation-associated disorder.


[0017] In a still further aspect, the invention provides a method of treating or preventing or delaying a ORFX-associated disorder. The method includes administering to a subject in which such treatment or prevention or delay is desired a ORFX nucleic acid, a ORFX polypeptide, or an ORFX antibody in an amount sufficient to treat, prevent, or delay a tissue proliferation-associated disorder in the subject.


[0018] Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In the case of conflict, the present specification, including definitions, will control. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting. Other features and advantages of the invention will be apparent from the following detailed description and claims.



DETAILED DESCRIPTION OF THE INVENTION

[0019] The invention provides novel polypeptides and nucleotides encoded thereby. The polynucleotides and their encoded polypeptides can be grouped according to the functions played by their gene products. Such functions include, structural proteins, proteins from which associated with metabolic pathways fatty acid metabolism, glycolysis, intermediary metabolism, calcium metabolism, proteases, and amino acid metabolism, etc.


[0020] Included in the invention are 4534 novel nucleic acid sequences and their encoded polypeptides. The sequences are collectively referred to as “ORFX nucleic acids” or ORFX polynucleotides” and the corresponding encoded polypeptides are referred to as “ORFX polypeptides” or ORFX proteins”. The ORFX polynucleotides and the encoded polypeptides are


[0021] To determine similarity to previously described proteins, polypeptides encoded by ORFX DNA sequences were tested using the Framesearch Algorithm against a nonredundant version of the GenPept Database from NCBI/Genbank. DNA sequences that had a score of ‘90’ or above (Framesearch algorithm score, Edelman et. al. GCG Genetics) to a known protein were selected. Open reading frames were extended beyond the region of the protein matched using standard DNA translation and codon tables. Novel proteins that lacked a protein match were translated against the standard genetic codons and proteins with an ORF at least 80 amino acids and containing a Methionine start are included in the Table.


[0022] Column 4 of Table 1, entitled “Protein Domain”, lists previously described protein domains, designated by pfam entries, that are present in the polypeptides encoded by the ORFs, Also included in column 3 are proteins in which these domains are present. The pfam entries can be retrieved from http://pfam.wustl.edu/. DNA sequences were translated in all six frames and tested using the Hmmer Algorithm against the Pfam Database (References to the algorithm and Pfam database can be found at http://pfam.wustl.edu). Translated DNA sequences that matched a protein domain entry in the Pfam database AND had a score of ‘7.5’ were selected.


[0023] Column 5 of Table 3, entitled “Protein Classification”, lists the classification assigned for the protein, based on its homology. Examples of proteins in the classification include the following:


[0024] Amylases


[0025] Amylase is responsible for endohydrolysis of 1,4-alpha-glucosidic linkages in oligosaccharides and polysaccharides. Variations in amylase gene may be indicative of delayed maturation and of various amylase producing neoplasms and carcinomas.


[0026] Amyloid


[0027] The serum amyloid A (SAA) proteins comprise a family of vertebrate proteins that associate predominantly with high density lipoproteins (HDL). The synthesis of certain members of the family is greatly increased in inflammation. Prolonged elevation of plasma SAA levels, as in chronic inflammation, 15 results in a pathological condition, called amyloidosis, which affects the liver, kidney and spleen and which is characterized by the highly insoluble accumulation of SAA in these tissues. Amyloid selectively inhibits insulin-stimulated glucose utilization and glycogen deposition in muscle, while not affecting adipocyte glucose metabolism. Deposition of fibrillar amyloid proteins intraneuronally, as neurofibrillary tangles, extracellularly, as plaques and in blood vessels, is characteristic of both Alzheimer's disease and aged Down's syndrome. Amyloid deposition is also associated with type II diabetes mellitus.


[0028] Angiopoeitin


[0029] Members of the angiopoeitin/fibrinogen family have been shown to stimulate the generation of new blood vessels, inhibit the generation of new blood vessels, and perform several roles in blood clotting. This generation of new blood vessels, called angiogenesis, is also an essential step in tumor growth in order for the tumor to get the blood supply it needs to expand. Variation in these genes may be predictive of any form of heart disease, numerous blood clotting disorders, stroke, hypertension and predisposition to tumor formation and metastasis. In particular, these variants may be predictive of the response to various antihypertensive drugs and chemotherapeutic and anti-tumor agents.


[0030] Apoptosis-related Proteins


[0031] Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic). Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. Variants of apoptosis related genes may be useful in formulation of anti-aging drugs.


[0032] Cadherin, Cyclin, Polymerase, Oncogenes, Histones, Kinases


[0033] Members of the cell division/cell cycle pathways such as cyclins, many transcription factors and kinases, DNA polymerases, histones, helicases and other oncogenes play a critical role in carcinogenesis where the uncontrolled proliferation of cells leads to tumor formation and eventually metastasis. Variation in these genes may be predictive of predisposition to any form of cancer, from increased risk of tumor formation to increased rate of metastasis. In particular, these variants may be predictive of the response to various chemotherapeutic and anti-tumor agents.


[0034] Colony-stimulating Factor-related Proteins


[0035] (Granulocyte/macrophage colony-stimulating factors are cytokines that act in hematopoiesis by controlling the production, differentiation, and function of 2 related white cell populations of the blood, the granulocytes and the monocytes-macrophages.


[0036] Complement-related Proteins


[0037] Complement proteins are immune associated cytotoxic agents, acting in a chain reaction to exterminate target cells to that were opsonized (primed) with antibodies, by forming a membrane attack complex (MAC). The mechanism of killing is by opening pores in the target cell membrane. Variations in 20 complement genes or their inhibitors are associated with many autoimmune disorders. Modified serum levels of complement products cause edemas of various tissues, lupus (SLE), vasculitis, glomerulonephritis, renal failure, hemolytic anemia, thrombocytopenia, and arthritis. They interfere with mechanisms of ADCC (antibody dependent cell cytotoxicity), severely impair immune competence and reduce phagocytic ability. Variants of complement genes may also be indicative of type I diabetes mellitus, meningitis neurological disorders such as nemaline myopathy, neonatal hypotonia, muscular disorders such as congenital myopathy and other diseases.


[0038] Cytochrome


[0039] The respiratory chain is a key biochemical pathway which is essential to all aerobic cells. There are five different cytochromes involved in the chain. These are heme bound proteins which serve as electron carriers. Modifications in these genes may be predictive of ataxia areflexia, dementia and myopathic and neuropathic changes in muscles. Also, association with various types of solid tumors.


[0040] Kinesins


[0041] Kinesins are tubulin molecular motors that function to transport organelles within cells and to move chromosomes along microtubules during cell division. Modifications of these genes may be indicative of neurological disorders such as Pick disease of the brain, tuberous sclerosis.


[0042] Cytokines, Interferon, Interleukin


[0043] Members of the cytokine families are known for their potent ability to stimulate cell growth and division even at low concentrations. Cytokines such as erythropoietin are cell-specific in their growth stimulation; erythropoietin is useful for the stimulation of the proliferation of erythroblasts. Variants in cytokines may be predictive for a wide variety of diseases, including cancer predisposition.


[0044] G-protein Coupled Receptors


[0045] G-protein coupled receptors (also called R7G) are an extensive group of hormones, neurotransmitters, odorants and light receptors which transduce extracellular signals by interaction with guanine nucleotide-binding (G) proteins. Alterations in genes coding for G-coupled proteins may be involved in and indicative of a vast number of physiological conditions. These include blood pressure regulation, renal dysfunctions, male infertility, dopamine associated cognitive, emotional, and endocrine functions, hypercalcemia, chondrodysplasia and osteoporosis, pseudohypoparathyroidism, growth retardation and dwarfism.


[0046] Thioesterases


[0047] Eukaryotic thiol proteases are a family of proteolytic enzymes which contain an active site cysteine. Catalysis proceeds through a thioester intermediate and is facilitated by a nearby histidine side chain; an asparagine completes the essential catalytic triad. Variants of thioester associated genes may be predictive of neuronal disorders and mental illnesses such as Ceroid Lipoffiscinosis, Neuronal 1, Infantile, Santavuori disease and more.


[0048] The key to the molecule type is as follows:
1Abbrev:Title:amylaseamylase proteinamylaseinhibamylase inhibitoramyloidamyloid proteinapoptosisapoptosis associated proteinapoptosisinhibapoptosis inhibitorsapoptosisrecepapoptosis receptorsATPase_associatedATPase associated proteinbiotindepbiotin dependent enzyme/proteincadherincadherin proteincalcium_channelcalcium channel proteincarboxylasecarboxylase proteincathepsincathepsin/carboxypeptidasescathepsininhibcathepsin/carboxypeptidase inhibitorchloride_channelchloride channel proteincollagencollagencomplementcomplement proteincomplementreceptcomplement receptor proteincomplementinhibcomplement inhibitorcsfcolony stimulating factorcsfreceptcolony stimulating factor receptorcyclincyclin proteincyto450cytochrome p450 proteincytochromecytochrome related proteindeaminasedeaminasedehydrogenasedehydrogenasedesaturasedesaturasedna_rna_bindDNA/RNA binding protein/factordna_rna_inhibDNA/RNA binding protein/factor inhibitordyneindyneinelastaseelastaseelastaseinhibelastase inhibitorephEPH family of tyrosine kinasesesteraseesteraseesteraseinhibesterase inhibitorfgffibroblast growth factorfgfreceptorfibroblast growth factor receptorgabaGABA receptorglucoamylaseglucoamylaseglucoronidaseglucoronidaseglycoproteinglycoproteinGuanylylguanylylate cyclasehelicasehelicasehistonehistoneHOMhomologoushomeoboxhomeobox proteinhydrolasehydrolasehydroxysteroidhydroxysteroid associated proteinhypoxanthinehypoxanthine associated proteinimmunoglobimmunoglobulinimmunoglobreceptimmunoglobulin receptorinterferoninterferoninterleukininterleukininterleukinreceptinterleukin receptorisomeraseisomeraseisomeraseinhibitorisomerase inhibitorisomerasereceptorisomerase receptorkinasekinasekinaseinhibitorkinase inhibitorkinasereceptorkinase receptorkinesinkinesinlamininlaminin associated proteinlipaselipasemetallothioneinmetallothioneinMHCmajor histocompatability complexmisc_channelmiscellaneous channelngfnerve growth factornuci_recptnuclear receptornucleasenucleaseoncogeneoncogene associated proteinoxidaseoxidaseoxygenaseoxygenasepeptidasepeptidaseperoxidaseperoxidasephosphatasephosphatasephosphataseinhibphosphatase inhibitorphosphorylasephosphorylasePIRPIR DATABASE (release 56,29 OCT. 1998)polymerasepolymerasepotassium_channelpotassium channel proteinprostaglandinprostaglandinproteaseproteaseproteaseinhibprotease inhibitorreductasereductaseribosomalprotribosomal associated proteinRTREMBLDATABASE translated entries not tobe incorporated into SWISS-PROT(20 JUL. 1998)SIMsimilarSPTREMBL DATABASE translated entries to beincorporated into SWISS-PROT(20 JUL. 1998)structstructural associated proteinsulfotransferasesulfotransferaseSWPSWISS-PROT DATABASE(release 18 OCT. 1998)SWPNSWISS-PROT Update(release 11 NOV. 1998)synthasesynthasetgftransforming growth factortgfreceptortransforming growth factor receptorthioesterasethioesterasethiolasethiolasetm7seven transmembrane domain G-proteincoupled receptortnfnecrosis factor receptortraffictumor necrosis factortnfreceptortumor trafficking associated proteinTRNEMBL DATABASE translated entriesupdate (20 JUL. 1998)transcriptfactortranscription factortransferasetransferasetransporttransport proteintubulintubulinubiquitinubiquitinunclassifiedProtein not categorized into one of theaforementioned protein familieswater channelwater channel protein


[0049] from the disclosed sequence while still encoding a protein that maintains its ORFX-like activities and physiological functions. The invention further includes the complement of the nucleic acid sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534), including fragments, derivatives, analogs and homolog thereof. The invention additionally includes nucleic acids or nucleic acid fragments, or complements thereto, whose structures include chemical modifications.


[0050] Also included are nucleic acid fragments sufficient for use as hybridization probes to identify ORFX-encoding nucleic acids (e.g., ORFX mRNA) and fragments for use as polymerase chain reaction (PCR) primers for the amplification or mutation of ORFX nucleic acid molecules. As used herein, the term “nucleic acid molecule” is intended to include DNA molecules (e.g, cDNA or genomic DNA), RNA molecules (e.g., mRNA), analogs of the DNA or RNA generated using nucleotide analogs, and derivatives, fragments and homologs thereof. The nucleic acid molecule can be single-stranded or double-stranded, but preferably is double-stranded DNA.


[0051] “Probes” refer to nucleic acid sequences of variable length, preferably between at least about 10 nucleotides (nt), 100 nt, or as many as about, e.g., 6,000 nt, depending on use. Probes are used in the detection of identical, similar, or complementary nucleic acid sequences. Longer length probes are usually obtained from a natural or recombinant source, are highly specific and much slower to hybridize than oligomers. Probes may be single- or double-stranded and designed to have specificity in PCR, membrane-based hybridization technologies, or ELISA-like technologies.


[0052] An “isolated” nucleic acid molecule is one that is separated from other nucleic acid molecules that are present in the natural source of the nucleic acid. Examples of isolated nucleic acid molecules include, but are not limited to, recombinant DNA molecules contained in a vector, recombinant DNA molecules maintained in a heterologous host cell, partially or substantially purified nucleic acid molecules, and synthetic DNA or RNA molecules. Preferably, an “isolated” nucleic acid is free of sequences which naturally flank the nucleic acid (i.e., sequences located at the 5′ and 3′ ends of the nucleic acid) in the genomic DNA of the organism from which the nucleic acid is derived. For example, in various embodiments, the isolated ORFX nucleic acid molecule can contain less than about 50 kb, 25 kb, 5 kb, 4 kb, 3 kb, 2 kb, 1 kb, 0.5 kb or 0.1 kb of nucleotide sequences which naturally flank the nucleic acid molecule in genomic DNA of the cell from which the nucleic acid is derived. Moreover, an “isolated” nucleic acid molecule, such as a cDNA molecule, can be substantially free of other cellular material or culture medium when produced by recombinant techniques, or of chemical precursors or other chemicals when chemically synthesized.


[0053] A nucleic acid molecule of the present invention, e.g., a nucleic acid molecule having the nucleotide sequence of SEQ ID NO:2n−1 (wherein n=1 to 4534), or a complement of any of this nucleotide sequence, can be isolated using standard molecular biology techniques and the sequence information provided herein. Using all or a portion of the nucleic acid sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534) as a hybridization probe, ORFX nucleic acid sequences can be isolated using standard hybridization and cloning techniques (e.g., as described in Sambrook et al., eds., Molecular Cloning: A Laboratory Manual 2nd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1989; and Ausubel, et al., eds., Current Protocols in Molecular Biology, John Wiley & Sons, New York, N.Y., 1993.)


[0054] A nucleic acid of the invention can be amplified using cDNA, mRNA or alternatively, genomic DNA, as a template and appropriate oligonucleotide primers according to standard PCR amplification techniques. The nucleic acid so amplified can be cloned into an appropriate vector and characterized by DNA sequence analysis. Furthermore, oligonucleotides corresponding to ORFX nucleotide sequences can be prepared by standard synthetic techniques, e.g., using an automated DNA synthesizer.


[0055] As used herein, the term “oligonucleotide” refers to a series of linked nucleotide residues, which oligonucleotide has a sufficient number of nucleotide bases to be used in a PCR reaction. A short oligonucleotide sequence may be based on, or designed from, a genomic or cDNA sequence and is used to amplify, confirm, or reveal the presence of an identical, similar or complementary DNA or RNA in a particular cell or tissue. Oligonucleotides comprise portions of a nucleic acid sequence having about 10 nt, 50 nt, or 100 nt in length, preferably about 15 nt to 30 nt in length. In one embodiment, an oligonucleotide comprising a nucleic acid molecule less than 100 nt in length would further comprise at lease 6 contiguous nucleotides of any of SEQ ID NO:2n−1 (wherein n=1 to 4534), or a complement thereof. Oligonucleotides may be chemically synthesized and may be used as probes.


[0056] In another embodiment, an isolated nucleic acid molecule of the invention comprises a nucleic acid molecule that is a complement of the nucleotide sequence shown in any of SEQ ID NO:2n−1 (wherein n=1 to 4534). In another embodiment, an isolated nucleic acid molecule of the invention comprises a nucleic acid molecule that is a complement of the nucleotide sequence shown in any of SEQ ID NO:2n−1 (wherein n=1 to 4534), or a portion of this nucleotide sequence. A nucleic acid molecule that is complementary to the nucleotide sequence shown in is one that is sufficiently complementary to the nucleotide sequence shown in of any of SEQ ID NO:2n−1 (wherein n=1 to 4534) that it can hydrogen bond with little or no mismatches to the nucleotide sequence shown in of any of SEQ ID NO:2n−1 (wherein n=1 to 4534), thereby forming a stable duplex.


[0057] As used herein, the term “complementary” refers to Watson-Crick or Hoogsteen base pairing between nucleotides units of a nucleic acid molecule, and the term “binding” means the physical or chemical interaction between two polypeptides or compounds or associated polypeptides or compounds or combinations thereof. Binding includes ionic, non-ionic, Von der Waals, hydrophobic interactions, etc. A physical interaction can be either direct or indirect. Indirect interactions may be through or due to the effects of another polypeptide or compound. Direct binding refers to interactions that do not take place through, or due to, the effect of another polypeptide or compound, but instead are without other substantial chemical intermediates.


[0058] Moreover, the nucleic acid molecule of the invention can comprise only a portion of the nucleic acid sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534), e.g. a fragment that can be used as a probe or primer, or a fragment encoding a biologically active portion of ORFX. Fragments provided herein are defined as sequences of at least 6 (contiguous) nucleic acids or at least 4 (contiguous) amino acids, a length sufficient to allow for specific hybridization in the case of nucleic acids or for specific recognition of an epitope in the case of amino acids, respectively, and are at most some portion less than a full length sequence. Fragments may be derived from any contiguous portion of a nucleic acid or amino acid sequence of choice. Derivatives are nucleic acid sequences or amino acid sequences formed from the native compounds either directly or by modification or partial substitution. Analogs are nucleic acid sequences or amino acid sequences that have a structure similar to, but not identical to, the native compound but differs from it in respect to certain components or side chains. Analogs may be synthetic or from a different evolutionary origin and may have a similar or opposite metabolic activity compared to wild type.


[0059] Derivatives and analogs may be full length or other than full length, if the derivative or analog contains a modified nucleic acid or amino acid, as described below. Derivatives or analogs of the nucleic acids or proteins of the invention include, but are not limited to, molecules comprising regions that are substantially homologous to the nucleic acids or proteins of the invention, in various embodiments, by at least about 70%, 80%, 85%, 90%, 95%, 98%, or even 99% identity (with a preferred identity of 80-99%) over a nucleic acid or amino acid sequence of identical size or when compared to an aligned sequence in which the alignment is done by a computer homology program known in the art, or whose encoding nucleic acid is capable of hybridizing to the complement of a sequence encoding the aforementioned proteins under stringent, moderately stringent, or low stringent conditions. See e.g. Ausubel, et al., Current Protocols in Molecular Biology, John Wiley & Sons, New York, N.Y., 1993, and below. An exemplary program is the Gap program (Wisconsin Sequence Analysis Package, Version 8 for UNIX, Genetics Computer Group, University Research Park, Madison, Wis.) using the default settings, which uses the algorithm of Smith and Waterman (Adv. Appl. Math., 1981, 2: 482-489, which is incorporated herein by reference in its entirety).


[0060] A “homologous nucleic acid sequence” or “homologous amino acid sequence,” or variations thereof, refer to sequences characterized by a homology at the nucleotide level or amino acid level as discussed above. Homologous nucleotide sequences encode those sequences coding for isoforms of ORFX polypeptide. Isoforms can be expressed in different tissues of the same organism as a result of, for example, alternative splicing of RNA. Alternatively, isoforms can be encoded by different genes. In the present invention, homologous nucleotide sequences include nucleotide sequences encoding for a ORFX polypeptide of species other than humans, including, but not limited to, mammals, and thus can include, e.g., mouse, rat, rabbit, dog, cat cow, horse, and other organisms. Homologous nucleotide sequences also include, but are not limited to, naturally occurring allelic variations and mutations of the nucleotide sequences set forth herein. A homologous nucleotide sequence does not, however, include the nucleotide sequence encoding human ORFX protein. Homologous nucleic acid sequences include those nucleic acid sequences that encode conservative amino acid substitutions (see below) in any of SEQ ID NO:2n (wherein n=1 to 4534) as well as a polypeptide having ORFX activity. Biological activities of the ORFX proteins are described below. A homologous amino acid sequence does not encode the amino acid sequence of a human ORFX polypeptide.


[0061] The nucleotide sequence determined from the cloning of the human ORFX gene allows for the generation of probes and primers designed for use in identifying the cell types disclosed and/or cloning ORFX homologues in other cell types, e.g., from other tissues, as well as ORFX homologues from other mammals. The probe/primer typically comprises a substantially purified oligonucleotide. The oligonucleotide typically comprises a region of nucleotide sequence that hybridizes under stringent conditions to at least about 12, 25, 50, 100, 150, 200, 250, 300, 350 or 400 or more consecutive sense strand nucleotide sequence of SEQ ID NO:2n−1 (wherein n=1 to 4534); or an anti-sense strand nucleotide sequence of SEQ ID NO:2n−1 (wherein n=1 to 4534); or of a naturally occurring mutant of SEQ ID NO:2n−1 (wherein n=1 to 4534).


[0062] Probes based on the human ORFX nucleotide sequence can be used to detect transcripts or genomic sequences encoding the same or homologous proteins. In various embodiments, the probe further comprises a label group attached thereto, e.g., the label group can be a radioisotope, a fluorescent compound, an enzyme, or an enzyme co-factor. Such probes can be used as a part of a diagnostic test kit for identifying cells or tissue which misexpress a ORFX protein, such as by measuring a level of a ORFX-encoding nucleic acid in a sample of cells from a subject e.g., detecting ORFX mRNA levels or determining whether a genomic ORFX gene has been mutated or deleted.


[0063] “A polypeptide having a biologically active portion of ORFX” refers to polypeptides exhibiting activity similar, but not necessarily identical to, an activity of a polypeptide of the present invention, including mature forms, as measured in a particular biological assay, with or without dose dependency. A nucleic acid fragment encoding a “biologically active portion of ORFX” can be prepared by isolating a portion of SEQ ID NO:2n−1 (wherein n=1 to 4534), that encodes a polypeptide having a ORFX biological activity (biological activities of the ORFX proteins are summarized in Table 1), expressing the encoded portion of ORFX protein (e.g., by recombinant expression in vitro) and assessing the activity of the encoded portion of ORFX. For example, a nucleic acid fragment encoding a biologically active portion of ORFX can optionally include a domain as shown in Table 1, column 4.


[0064] ORFX Variants


[0065] The invention further encompasses nucleic acid molecules that differ from the disclosed ORFX nucleotide sequences due to degeneracy of the genetic code. These nucleic acids thus encode the same ORFX protein as that encoded by the nucleotide sequence shown in SEQ ID NO:2n−1 (wherein n=1 to 4534). In another embodiment, an isolated nucleic acid molecule of the invention has a nucleotide sequence encoding a protein having an amino acid sequence shown in any of SEQ ID NO:2n (wherein n=1 to 4534).


[0066] In addition to the human ORFX nucleotide sequence shown in any of SEQ ID NO:2n−1 (wherein n=1 to 4534), it will be appreciated by those skilled in the art that DNA sequence polymorphisms that lead to changes in the amino acid sequences of ORFX may exist within a population (e.g., the human population). Such genetic polymorphism in the ORFX gene may exist among individuals within a population due to natural allelic variation. As used herein, the terms “gene” and “recombinant gene” refer to nucleic acid molecules comprising an open reading frame encoding a ORFX protein, preferably a mammalian ORFX protein. Such natural allelic variations can typically result in 1-5% variance in the nucleotide sequence of the ORFX gene. Any and all such nucleotide variations and resulting amino acid polymorphisms in ORFX that are the result of natural allelic variation and that do not alter the functional activity of ORFX are intended to be within the scope of the invention.


[0067] Moreover, nucleic acid molecules encoding ORFX proteins from other species, and thus that have a nucleotide sequence that differs from the human sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534), are intended to be within the scope of the invention. Nucleic acid molecules corresponding to natural allelic variants and homologues of the ORFX cDNAs of the invention can be isolated based on their homology to the human ORFX nucleic acids disclosed herein using the human cDNAs, or a portion thereof, as a hybridization probe according to standard hybridization techniques under stringent hybridization conditions.


[0068] In another embodiment, an isolated nucleic acid molecule of the invention is at least 6 nucleotides in length and hybridizes under stringent conditions to the nucleic acid molecule comprising the nucleotide sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534). In another embodiment, the nucleic acid is at least 10, 25, 50, 100, 250, 500 or 750 nucleotides in length. In another embodiment, an isolated nucleic acid molecule of the invention hybridizes to the coding region. As used herein, the term “hybridizes under stringent conditions” is intended to describe conditions for hybridization and washing under which nucleotide sequences at least 60% homologous to each other typically remain hybridized to each other.


[0069] Homologs (i.e., nucleic acids encoding ORFX proteins derived from species other than human) or other related sequences (e.g., paralogs) can be obtained by low, moderate or high stringency hybridization with all or a portion of the particular human sequence as a probe using methods well known in the art for nucleic acid hybridization and cloning.


[0070] As used herein, the phrase “stringent hybridization conditions” refers to conditions under which a probe, primer or oligonucleotide will hybridize to its target sequence, but to no other sequences. Stringent conditions are sequence-dependent and will be different in different circumstances. Longer sequences hybridize specifically at higher temperatures than shorter sequences. Generally, stringent conditions are selected to be about 5° C. lower than the thermal melting point (Tm) for the specific sequence at a defined ionic strength and pH. The Tm is the temperature (under defined ionic strength, pH and nucleic acid concentration) at which 50% of the probes complementary to the target sequence hybridize to the target sequence at equilibrium. Since the target sequences are generally present at excess, at Tm, 50% of the probes are occupied at equilibrium. Typically, stringent conditions will be those in which the salt concentration is less than about 1.0 M sodium ion, typically about 0.01 to 1.0 M sodium ion (or other salts) at pH 7.0 to 8.3 and the temperature is at least about 30° C. for short probes, primers or oligonucleotides (e.g., 10 nt to 50 nt) and at least about 60° C. for longer probes, primers and oligonucleotides. Stringent conditions may also be achieved with the addition of destabilizing agents, such as formamide.


[0071] Stringent conditions are known to those skilled in the art and can be found in Current Protocols in Molecular Biology, John Wiley & Sons, N.Y. (1989), 6.3.1-6.3.6. Preferably, the conditions are such that sequences at least about 65%, 70%, 75%, 85%, 90%, 95%, 98%, or 99% homologous to each other typically remain hybridized to each other. A non-limiting example of stringent hybridization conditions is hybridization in a high salt buffer comprising 6×SSC, 50 mM Tris-HCl (pH 7.5), 1 mM EDTA, 0.02% PVP, 0.02% Ficoll, 0.02% BSA, and 500 mg/ml denatured salmon sperm DNA at 65° C. This hybridization is followed by one or more washes in 0.2×SSC, 0.01% BSA at 50° C. An isolated nucleic acid molecule of the invention that hybridizes under stringent conditions to the sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534) corresponds to a naturally occurring nucleic acid molecule. As used herein, a “naturally-occurring” nucleic acid molecule refers to an RNA or DNA molecule having a nucleotide sequence that occurs in nature (e.g., encodes a natural protein).


[0072] In a second embodiment, a nucleic acid sequence that is hybridizable to the nucleic acid molecule comprising the nucleotide sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534), or fragments, analogs or derivatives thereof, under conditions of moderate stringency is provided. A non-limiting example of moderate stringency hybridization conditions are hybridization in 6×SSC, 5×Denhardt's solution, 0.5% SDS and 100 mg/ml denatured salmon sperm DNA at 55° C., followed by one or more washes in 1×SSC, 0.1% SDS at 37° C. Other conditions of moderate stringency that may be used are well known in the art. See, e.g., Ausubel et al. (eds.), 1993, Current Protocols in Molecular Biology, John Wiley & Sons, NY, and Kriegler, 1990, Gene Transfer and Expression, A Laboratory Manual, Stockton Press, NY.


[0073] In a third embodiment, a nucleic acid that is hybridizable to the nucleic acid molecule comprising the nucleotide sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534), or fragments, analogs or derivatives thereof, under conditions of low stringency, is provided. A non-limiting example of low stringency hybridization conditions are hybridization in 35% formamide, 5×SSC, 50 mM Tris-HCl (pH 7.5), 5 mM EDTA, 0.02% PVP, 0.02% Ficoll, 0.2% BSA, 100 mg/ml denatured salmon sperm DNA, 10% (wt/vol) dextran sulfate at 40° C., followed by one or more washes in 2×SSC, 25 mM Tris-HCl (pH 7.4), 5 mM EDTA, and 0.1% SDS at 50° C. Other conditions of low stringency that may be used are well known in the art (e.g., as employed for cross-species hybridizations). See, e.g., Ausubel et al. (eds.), 1993, Current Protocols in Molecular Biology, John Wiley & Sons, NY, and Kriegler, 1990, Gene Transfer and Expression, A Laboratory Manual, Stockton Press, NY; Shilo and Weinberg, 1981, Proc Natl Acad Sci USA 78: 6789-6792.


[0074] Conservative Mutations


[0075] In addition to naturally-occurring allelic variants of the ORFX sequence that may exist in the population, the skilled artisan will further appreciate that changes can be introduced by mutation into the nucleotide sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534), thereby leading to changes in the amino acid sequence of the encoded ORFX protein, without altering the functional ability of the ORFX protein. For example, nucleotide substitutions leading to amino acid substitutions at “non-essential” amino acid residues can be made in the sequence of any of SEQ ID NO:2n−1 (wherein n=1 to 4534). A “non-essential” amino acid residue is a residue that can be altered from the wild-type sequence of ORFX without altering the biological activity, whereas an “essential” amino acid residue is required for biological activity. For example, amino acid residues that are conserved among the ORFX proteins of the present invention, are predicted to be particularly unamenable to alteration.


[0076] Amino acid residues that are conserved among members of an ORFX family members are predicted to be less amenable to alteration. For example, an ORFX protein according to the present invention can contain at least one domain (e.g., as shown in Table 1) that is a typically conserved region in an ORFX family member. As such, these conserved domains are not likely to be amenable to mutation. Other amino acid residues, however, (e.g., those that are not conserved or only semi-conserved among members of the ORFX family) may not be as essential for activity and thus are more likely to be amenable to alteration.


[0077] Another aspect of the invention pertains to nucleic acid molecules encoding ORFX proteins that contain changes in amino acid residues that are not essential for activity. Such ORFX proteins differ in amino acid sequence from any of any of SEQ ID NO:2n (wherein n=1 to 4534), yet retain biological activity. In one embodiment, the isolated nucleic acid molecule comprises a nucleotide sequence encoding a protein, wherein the protein comprises an amino acid sequence at least about 75% homologous to the amino acid sequence of any of SEQ ID NO:2n (wherein n=1 to 4534). Preferably, the protein encoded by the nucleic acid is at least about 80% homologous to any of SEQ ID NO:2n (wherein n=1 to 4534), more preferably at least about 90%, 95%, 98%, and most preferably at least about 99% homologous to SEQ ID NO:2.


[0078] An isolated nucleic acid molecule encoding a ORFX protein homologous to the protein of any of SEQ ID NO:2n (wherein n=1 to 4534) can be created by introducing one or more nucleotide substitutions, additions or deletions into the corresponding nucleotide sequence, i.e. SEQ ID NO:2n−1 for the corresponding n, such that one or more amino acid substitutions, additions or deletions are introduced into the encoded protein.


[0079] Mutations can be introduced into SEQ ID NO:2n−1 (wherein n=1 to 4534) by standard techniques, such as site-directed mutagenesis and PCR-mediated mutagenesis. Preferably, conservative amino acid substitutions are made at one or more predicted non-essential amino acid residues. A “conservative amino acid substitution” is one in which the amino acid residue is replaced with an amino acid residue having a similar side chain. Families of amino acid residues having similar side chains have been defined in the art. These families include amino acids with basic side chains (e.g., lysine, arginine, histidine), acidic side chains (e.g., aspartic acid, glutamic acid), uncharged polar side chains (e.g., glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine), nonpolar side chains (e.g., alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, tryptophan), beta-branched side chains (e.g., threonine, valine, isoleucine) and aromatic side chains (e.g., tyrosine, phenylalanine, tryptophan, histidine). Thus, a predicted nonessential amino acid residue in ORFX is replaced with another amino acid residue from the same side chain family. Alternatively, in another embodiment, mutations can be introduced randomly along all or part of a ORFX coding sequence, such as by saturation mutagenesis, and the resultant mutants can be screened for ORFX biological activity to identify mutants that retain activity. Following mutagenesis of SEQ ID NO:2n−1 (wherein n=1 to 4534). the encoded protein can be expressed by any recombinant technology known in the art and the activity of the protein can be determined.


[0080] In one embodiment, a mutant ORFX protein can be assayed for (1) the ability to form protein:protein interactions with other ORFX proteins, other cell-surface proteins, or biologically active portions thereof, (2) complex formation between a mutant ORFX protein and a ORFX receptor; (3) the ability of a mutant ORFX protein to bind to an intracellular target protein or biologically active portion thereof; (e.g., avidin proteins); (4) the ability to bind BRA protein; or (5) the ability to specifically bind an anti-ORFX protein antibody.


[0081] Antisense


[0082] Another aspect of the invention pertains to isolated antisense nucleic acid molecules that are hybridizable to or complementary to the nucleic acid molecule comprising the nucleotide sequence of SEQ ID NO:2n−1 (wherein n=1 to 4534), or fragments, analogs or derivatives thereof. An “antisense” nucleic acid comprises a nucleotide sequence that is complementary to a “sense” nucleic acid encoding a protein, e.g., complementary to the coding strand of a double-stranded cDNA molecule or complementary to an mRNA sequence. In specific aspects, antisense nucleic acid molecules are provided that comprise a sequence complementary to at least about 10, 25, 50, 100, 250 or 500 nucleotides or an entire ORFX coding strand, or to only a portion thereof. Nucleic acid molecules encoding fragments, homologs, derivatives and analogs of a ORFX protein of any of SEQ ID NO:2n (wherein n=1 to 4534) or antisense nucleic acids complementary to a ORFX nucleic acid sequence of SEQ ID NO:2n−1 (wherein n=1 to 4534) are additionally provided.


[0083] In one embodiment, an antisense nucleic acid molecule is antisense to a “coding region” of the coding strand of a nucleotide sequence encoding ORFX. The term “coding region” refers to the region of the nucleotide sequence comprising codons which are translated into amino acid residues (e.g., the protein coding region of a human ORFX that corresponds to any of SEQ ID NO:2n (wherein n=1 to 4534)). In another embodiment, the antisense nucleic acid molecule is antisense to a “noncoding region” of the coding strand of a nucleotide sequence encoding ORFX. The term “noncoding region” refers to 5′ and 3′ sequences which flank the coding region that are not translated into amino acids (i.e., also referred to as 5′ and 3′ untranslated regions).


[0084] Given the coding strand sequences encoding ORFX disclosed herein (e.g., SEQ ID NO:2n−1 (wherein n=1 to 4534)), antisense nucleic acids of the invention can be designed according to the rules of Watson and Crick or Hoogsteen base pairing. The antisense nucleic acid molecule can be complementary to the entire coding region of ORFX mRNA, but more preferably is an oligonucleotide that is antisense to only a portion of the coding or noncoding region of ORFX mRNA. For example, the antisense oligonucleotide can be complementary to the region surrounding the translation start site of ORFX mRNA. An antisense oligonucleotide can be, for example, about 5, 10, 15, 20, 25, 30, 35, 40, 45 or 50 nucleotides in length. An antisense nucleic acid of the invention can be constructed using chemical synthesis or enzymatic ligation reactions using procedures known in the art. For example, an antisense nucleic acid (e.g., an antisense oligonucleotide) can be chemically synthesized using naturally occurring nucleotides or variously modified nucleotides designed to increase the biological stability of the molecules or to increase the physical stability of the duplex formed between the antisense and sense nucleic acids, e.g., phosphorothioate derivatives and acridine substituted nucleotides can be used.


[0085] Examples of modified nucleotides that can be used to generate the antisense nucleic acid include: 5-fluorouracil, 5-bromouracil, 5-chlorouracil, 5-iodouracil, hypoxanthine, xanthine, 4-acetylcytosine, 5-(carboxyhydroxylmethyl) uracil, 5-carboxymethylaminomethyl-2-thiouridine, 5-carboxymethylaminomethyluracil, dihydrouracil, beta-D-galactosylqueosine, inosine, N6-isopentenyladenine, 1-methylguanine, 1-methylinosine, 2,2-dimethylguanine, 2-methyladenine, 2-methylguanine, 3-methylcytosine, 5-methylcytosine, N6-adenine, 7-methylguanine, 5-methylaminomethyluracil, 5-methoxyaminomethyl-2-thiouracil, beta-D-mannosylqueosine, 5′-methoxycarboxymethyluracil, 5-methoxyuracil, 2-methylthio-N6-isopentenyladenine, uracil-5-oxyacetic acid (v), wybutoxosine, pseudouracil, queosine, 2-thiocytosine, 5-methyl-2-thiouracil, 2-thiouracil, 4-thiouracil, 5-methyluracil, uracil-5-oxyacetic acid methylester, uracil-5-oxyacetic acid (v), 5-methyl-2-thiouracil, 3-(3-amino-3-N-2-carboxypropyl) uracil, (acp3)w, and 2,6-diaminopurine. Alternatively, the antisense nucleic acid can be produced biologically using an expression vector into which a nucleic acid has been subcloned in an antisense orientation (i.e., RNA transcribed from the inserted nucleic acid will be of an antisense orientation to a target nucleic acid of interest, described further in the following subsection).


[0086] The antisense nucleic acid molecules of the invention are typically administered to a subject or generated in situ such that they hybridize with or bind to cellular mRNA and/or genomic DNA encoding a ORFX protein to thereby inhibit expression of the protein, e.g., by inhibiting transcription and/or translation. The hybridization can be by conventional nucleotide complementarity to form a stable duplex, or, for example, in the case of an antisense nucleic acid molecule that binds to DNA duplexes, through specific interactions in the major groove of the double helix. An example of a route of administration of antisense nucleic acid molecules of the invention includes direct injection at a tissue site. Alternatively, antisense nucleic acid molecules can be modified to target selected cells and then administered systemically. For example, for systemic administration, antisense molecules can be modified such that they specifically bind to receptors or antigens expressed on a selected cell surface, e.g. by linking the antisense nucleic acid molecules to peptides or antibodies that bind to cell surface receptors or antigens. The antisense nucleic acid molecules can also be delivered to cells using the vectors described herein. To achieve sufficient intracellular concentrations of antisense molecules, vector constructs in which the antisense nucleic acid molecule is placed under the control of a strong pol II or pol III promoter are preferred.


[0087] In yet another embodiment, the antisense nucleic acid molecule of the invention is an α-anomeric nucleic acid molecule. An α-anomeric nucleic acid molecule forms specific double-stranded hybrids with complementary RNA in which, contrary to the usual β-units, the strands run parallel to each other (Gaultier et al. (1987) Nucleic Acids Res 15: 6625-6641). The antisense nucleic acid molecule can also comprise a 2′-o-methylibonucleotide (Inoue et al. (1987) Nucleic Acids Res 15: 6131-6148) or a chimeric RNA-DNA analogue (Inoue et al. (1987) FEBS Lett 215: 327-330).


[0088] Ribozymes and PNA Moieties


[0089] Such modifications include, by way of nonlimiting example, modified bases, and nucleic acids whose sugar phosphate backbones are modified or derivatized. These modifications are carried out at least in part to enhance the chemical stability of the modified nucleic acid, such that they may be used, for example, as antisense binding nucleic acids in therapeutic applications in a subject.


[0090] In still another embodiment, an antisense nucleic acid of the invention is a ribozyme. Ribozymes are catalytic RNA molecules with ribonuclease activity that are capable of cleaving a single-stranded nucleic acid, such as an mRNA, to which they have a complementary region. Thus, ribozymes (e.g., hammerhead ribozymes (described in Haselhoff and Gerlach (1988) Nature 334:585-591)) can be used to catalytically cleave ORFX mRNA transcripts to thereby inhibit translation of ORFX mRNA. A ribozyme having specificity for a ORFX-encoding nucleic acid can be designed based upon the nucleotide sequence of a ORFX DNA disclosed herein (i.e., SEQ ID NO:2n−1 (wherein n=1 to 4534)). For example, a derivative of a Tetrahymena L-19 IVS RNA can be constructed in which the nucleotide sequence of the active site is complementary to the nucleotide sequence to be cleaved in a ORFX-encoding mRNA. See, e.g., Cech et al. U.S. Pat. No. 4,987,071; and Cech et al. U.S. Pat. No. 5,116,742. Alternatively, ORFX mRNA can be used to select a catalytic RNA having a specific ribonuclease activity from a pool of RNA molecules. See, e.g., Bartel et al., (1993) Science 261:1411-1418.


[0091] Alternatively, ORFX gene expression can be inhibited by targeting nucleotide sequences complementary to the regulatory region of the ORFX (e.g., the ORFX promoter and/or enhancers) to form triple helical structures that prevent transcription of the ORFX gene in target cells. See generally, Helene. (1991) Anticancer Drug Des. 6: 569-84; Helene. et.al. (1992) Ann. N.Y. Acad. Sci. 660:27-36; and Maher (1992) Bioassays 14: 807-15.


[0092] In various embodiments, the nucleic acids of ORFX can be modified at the base moiety, sugar moiety or phosphate backbone to improve, e.g., the stability, hybridization, or solubility of the molecule. For example, the deoxyribose phosphate backbone of the nucleic acids can be modified to generate peptide nucleic acids (see Hyrup et al. (1996) Bioorg Med Chem 4: 5-23). As used herein, the terms “peptide nucleic acids” or “PNAs” refer to nucleic acid mimics, e.g., DNA mimics, in which the deoxyribose phosphate backbone is replaced by a pseudopeptide backbone and only the four natural nucleobases are retained. The neutral backbone of PNAs has been shown to allow for specific hybridization to DNA and RNA under conditions of low ionic strength. The synthesis of PNA oligomers can be performed using standard solid phase peptide synthesis protocols as described in Hyrup et al. (1996) above; Perry-O'Keefe et al. (1996) PNAS 93: 14670-675.


[0093] PNAs of ORFX can be used in therapeutic and diagnostic applications. For example, PNAs can be used as antisense or antigene agents for sequence-specific modulation of gene expression by, e.g., inducing transcription or translation arrest or inhibiting replication. PNAs of ORFX can also be used, e.g., in the analysis of single base pair mutations in a gene by, e.g., PNA directed PCR clamping; as artificial restriction enzymes when used in combination with other enzymes, e.g., S1 nucleases (Hyrup B. (1996) above); or as probes or primers for DNA sequence and hybridization (Hyrup et al. (1996), above; Perry-O'Keefe (1996), above).


[0094] In another embodiment, PNAs of ORFX can be modified, e.g., to enhance their stability or cellular uptake, by attaching lipophilic or other helper groups to PNA, by the formation of PNA-DNA chimeras, or by the use of liposomes or other techniques of drug delivery known in


[0095] In general, an ORFX-like variant that preserves ORFX-like function includes any variant in which residues at a particular position in the sequence have been substituted by other amino acids, and further include the possibility of inserting an additional residue or residues between two residues of the parent protein as well as the possibility of deleting one or more residues from the parent sequence. Any amino acid substitution, insertion, or deletion is encompassed by the invention. In favorable circumstances, the substitution is a conservative substitution as defined above. Furthermore, without limiting the scope of the invention, positions of any of SEQ ID NO:2n (wherein n=1 to 4534) may be substitute such that a mutant or variant protein may include one or more substitutions


[0096] The invention also includes isolated ORFX proteins, and biologically active portions thereof, or derivatives, fragments, analogs or homologs thereof Also provided are polypeptide fragments suitable for use as immunogens to raise anti-ORFX antibodies. In one embodiment, native ORFX proteins can be isolated from cells or tissue sources by an appropriate purification scheme using standard protein purification techniques. In another embodiment, ORFX proteins are produced by recombinant DNA techniques. Alternative to recombinant expression, a ORFX protein or polypeptide can be synthesized chemically using standard peptide synthesis techniques.


[0097] An “isolated” or “purified” protein or biologically active portion thereof is substantially free of cellular material or other contaminating proteins from the cell or tissue source from which the ORFX protein is derived, or substantially free from chemical precursors or other chemicals when chemically synthesized. The language “substantially free of cellular material” includes preparations of ORFX protein in which the protein is separated from cellular components of the cells from which it is isolated or recombinantly produced. In one embodiment, the language “substantially free of cellular material” includes preparations of ORFX protein having less than about 30% (by dry weight) of non-ORFX protein (also referred to herein as a “contaminating protein”), more preferably less than about 20% of non-ORFX protein, still more preferably less than about 10% of non-ORFX protein, and most preferably less than about 5% non-ORFX protein. When the ORFX protein or biologically active portion thereof is recombinantly produced, it is also preferably substantially free of culture medium, i.e., culture medium represents less than about 20%, more preferably less than about 10%, and most preferably less than about 5% of the volume of the protein preparation.


[0098] The language “substantially free of chemical precursors or other chemicals” includes preparations of ORFX protein in which the protein is separated from chemical precursors or other chemicals that are involved in the synthesis of the protein. In one embodiment, the language “substantially free of chemical precursors or other chemicals” includes preparations of ORFX protein having less than about 30% (by dry weight) of chemical precursors or non-ORFX chemicals, more preferably less than about 20% chemical precursors or non-ORFX chemicals, still more preferably less than about 10% chemical precursors or non-ORFX chemicals, and most preferably less than about 5% chemical precursors or non-ORFX chemicals.


[0099] Biologically active portions of a ORFX protein include peptides comprising amino acid sequences sufficiently homologous to or derived from the amino acid sequence of the ORFX protein, e.g., the amino acid sequence shown in SEQ ID NO:2 that include fewer amino acids than the full length ORFX proteins, and exhibit at least one activity of a ORFX protein. Typically, biologically active portions comprise a domain or motif with at least one activity of the ORFX protein. A biologically active portion of a ORFX protein can be a polypeptide which is, for example, 10, 25, 50, 100 or more amino acids in length.


[0100] A biologically active portion of a ORFX protein of the present invention may contain at least one of the above-identified domains conserved between the FGF family of proteins. Moreover, other biologically active portions, in which other regions of the protein are deleted, can be prepared by recombinant techniques and evaluated for one or more of the functional activities of a native ORFX protein.


[0101] In an embodiment, the ORFX protein has an amino acid sequence shown in any of SEQ ID NO:2n (wherein n=1 to 4534). In other embodiments, the ORFX protein is substantially homologous to any of SEQ ID NO:2n (wherein n=1 to 4534) and retains the functional activity of the protein of any of SEQ ID NO:2n (wherein n=1 to 4534), yet differs in amino acid sequence due to natural allelic variation or mutagenesis, as described in detail below. Accordingly, in another embodiment, the ORFX protein is a protein that comprises an amino acid sequence at least about 45% homologous, and more preferably about 55, 65, 70, 75, 80, 85, 90, 95, 98 or even 99% homologous to the amino acid sequence of any of SEQ ID NO:2n (wherein n=1 to 4534) and retains the functional activity of the ORFX proteins of the corresponding polypeptide having the sequence of SEQ ID NO:2n (wherein n=1 to 4534).


[0102] Determining Homology Between Two or More Sequences


[0103] To determine the percent homology of two amino acid sequences or of two nucleic acids, the sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in either of the sequences being compared for optimal alignment between the sequences). The amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared. When a position in the first sequence is occupied by the same amino acid residue or nucleotide as the corresponding position in the second sequence, then the molecules are homologous at that position (i.e., as used herein amino acid or nucleic acid “homology” is equivalent to amino acid or nucleic acid “identity”).


[0104] The nucleic acid sequence homology may be determined as the degree of identity between two sequences. The homology may be determined using computer programs known in the art, such as GAP software provided in the GCG program package. See, Needleman and Wunsch 1970 J Mol Biol 48: 443-453. Using GCG GAP software with the following settings for nucleic acid sequence comparison: GAP creation penalty of 5.0 and GAP extension penalty of 0.3, the coding region of the analogous nucleic acid sequences referred to above exhibits a degree of identity preferably of at least 70%, 75%, 80%, 85%, 90%, 95%, 98%, or 99%, with the CDS (encoding) part of the DNA sequence shown in SEQ ID NO:2n−1 (wherein n=1 to 4534).


[0105] The term “sequence identity” refers to the degree to which two polynucleotide or polypeptide sequences are identical on a residue-by-residue basis over a particular region of comparison. The term “percentage of sequence identity” is calculated by comparing two optimally aligned sequences over that region of comparison,determining the number of positions at which the identical nucleic acid base (e.g., A, T, C, G, U, or I, in the case of nucleic acids) occurs in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the region of comparison (i.e., the window size), and multiplying the result by 100 to yield the percentage of sequence identity. The term “substantial identity” as used herein denotes a characteristic of a polynucleotide sequence, wherein the polynucleotide comprises a sequence that has at least 80 percent sequence identity, preferably at least 85 percent identity and often 90 to 95 percent sequence identity, more usually at least 99 percent sequence identity as compared to a reference sequence over a comparison region. The term “percentage of positive residues” is calculated by comparing two optimally aligned sequences over that region of comparison, determining the number of positions at which the identical and conservative amino acid substitutions, as defined above, occur in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the region of comparison (i.e., the window size), and multiplying the result by 100 to yield the percentage of positive residues.


[0106] Chimeric and Fusion Proteins


[0107] The invention also provides ORFX chimeric or fusion proteins. As used herein, a ORFX “chimeric protein” or “fusion protein” includes a ORFX polypeptide operatively linked to a non-ORFX polypeptide. A “ORFX polypeptide” refers to a polypeptide having an amino acid sequence corresponding to ORFX, whereas a “non-ORFX polypeptide” refers to a polypeptide having an amino acid sequence corresponding to a protein that is not substantially homologous to the ORFX protein, e.g., a protein that is different from the ORFX protein and that is derived from the same or a different organism. Within a ORFX fusion protein the ORFX polypeptide can correspond to all or a portion of a ORFX protein. In one embodiment, a ORFX fusion protein comprises at least one biologically active portion of a ORFX protein. In another embodiment, a ORFX fusion protein comprises at least two biologically active portions of a ORFX protein. Within the fusion protein, the term “operatively linked” is intended to indicate that the ORFX polypeptide and the non-ORFX polypeptide are fused in-frame to each other. The non-ORFX polypeptide can be fused to the N-terminus or C-terminus of the ORFX polypeptide.


[0108] For example, in one embodiment a ORFX fusion protein comprises a ORFX polypeptide operably linked to the extracellular domain of a second protein. Such fusion proteins can be further utilized in screening assays for compounds that modulate ORFX activity (such assays are described in detail below).


[0109] In another embodiment, the fusion protein is a GST-ORFX fusion protein in which the ORFX sequences are fused to the C-terminus of the GST (i.e., glutathione S-transferase) sequences. Such fusion proteins can facilitate the purification of recombinant ORFX.


[0110] In yet another embodiment, the fusion protein is a ORFX protein containing a heterologous signal sequence at its N-terminus. For example, the native ORFX signal sequence can be removed and replaced with a signal sequence from another protein. In certain host cells (e.g., mammalian host cells), expression and/or secretion of ORFX can be increased through use of a heterologous signal sequence.


[0111] In another embodiment, the fusion protein is a ORFX-immunoglobulin fusion protein in which the ORFX sequences comprising one or more domains are fused to sequences derived from a member of the immunoglobulin protein family. The ORFX-immunoglobulin fusion proteins of the invention can be incorporated into pharmaceutical compositions and administered to a subject to inhibit an interaction between a ORFX ligand and a ORFX protein on the surface of a cell, to thereby suppress ORFX-mediated signal transduction in vivo. In one nonlimiting example, a contemplated ORFX ligand of the invention is an ORFX receptor. The ORFX-immunoglobulin fusion proteins can be used to modulate the bioavailability of a ORFX cognate ligand. Inhibition of the ORFX ligand/ORFX interaction may be useful therapeutically for both the treatment of proliferative and differentiative disorders, as well as modulating (e.g., promoting or inhibiting) cell survival. Moreover, the ORFX-immunoglobulin fusion proteins of the invention can be used as immunogens to produce anti-ORFX antibodies in a subject, to purify ORFX ligands, and in screening assays to identify molecules that inhibit the interaction of ORFX with a ORFX ligand.


[0112] A ORFX chimeric or fusion protein of the invention can be produced by standard recombinant DNA techniques. For example, DNA fragments coding for the different polypeptide sequences are ligated together in-frame in accordance with conventional techniques, e.g., by employing blunt-ended or stagger-ended termnini for ligation, restriction enzyme digestion to provide for appropriate termini, filling-in of cohesive ends as appropriate, alkaline phosphatase treatment to avoid undesirable joining, and enzymatic ligation. In another embodiment, the fusion gene can be synthesized by conventional techniques including automated DNA synthesizers. Alternatively, PCR amplification of gene fragments can be carried out using anchor primers that give rise to complementary overhangs between two consecutive gene fragments that can subsequently be annealed and reamplified to generate a chimeric gene sequence (see, for example, Ausubel et al. (eds.) Current Protocols in Molecular Biology, John Wiley & Sons, 1992). Moreover, many expression vectors are commercially available that already encode a fusion moiety (e.g., a GST polypeptide). A ORFX-encoding nucleic acid can be cloned into such an expression vector such that the fusion moiety is linked in-frame to the ORFX protein.


[0113] ORFX Agonists and Antagonists


[0114] The present invention also pertains to variants of the ORFX proteins that function as either ORFX agonists (mimetics) or as ORFX antagonists. Variants of the ORFX protein can be generated by mutagenesis, e.g., discrete point mutation or truncation of the ORFX protein. An agonist of the ORFX protein can retain substantially the same, or a subset of, the biological activities of the naturally occurring form of the ORFX protein. An antagonist of the ORFX protein can inhibit one or more of the activities of the naturally occurring form of the ORFX protein by, for example, competitively binding to a downstream or upstream member of a cellular signaling cascade which includes the ORFX protein. Thus, specific biological effects can be elicited by treatment with a variant of limited function. In one embodiment, treatment of a subject with a variant having a subset of the biological activities of the naturally occurring form of the protein has fewer side effects in a subject relative to treatment with the naturally occurring form of the ORFX proteins.


[0115] Variants of the ORFX protein that function as either ORFX agonists (mimetics) or as ORFX antagonists can be identified by screening combinatorial libraries of mutants, e.g., truncation mutants, of the ORFX protein for ORFX protein agonist or antagonist activity. In one embodiment, a variegated library of ORFX variants is generated by combinatorial mutagenesis at the nucleic acid level and is encoded by a variegated gene library. A variegated library of ORFX variants can be produced by, for example, enzymatically ligating a mixture of synthetic oligonucleotides into gene sequences such that a degenerate set of potential ORFX sequences is expressible as individual polypeptides, or alternatively, as a set of larger fusion proteins (e.g., for phage display) containing the set of ORFX sequences therein. There are a variety of methods which can be used to produce libraries of potential ORFX variants from a degenerate oligonucleotide sequence. Chemical synthesis of a degenerate gene sequence can be performed in an automatic DNA synthesizer, and the synthetic gene then ligated into an appropriate expression vector. Use of a degenerate set of genes allows for the provision, in one mixture, of all of the sequences encoding the desired set of potential ORFX sequences. Methods for synthesizing degenerate oligonucleotides are known in the art (see, e.g., Narang (1983) Tetrahedron 39:3; Itakura et al. (1984) Annu Rev Biochem 53:323; Itakura et al. (1984) Science 198:1056; Ike et al. (1983) Nucl Acid Res 11:477.


[0116] Polypeptide Libraries


[0117] In addition, libraries of fragments of the ORFX protein coding sequence can be used to generate a variegated population of ORFX fragments for screening and subsequent selection of variants of a ORFX protein. In one embodiment, a library of coding sequence fragments can be generated by treating a double stranded PCR fragment of a ORFX coding sequence with a nuclease under conditions wherein nicking occurs only about once per molecule, denaturing the double stranded DNA, renaturing the DNA to form double stranded DNA that can include sense/antisense pairs from different nicked products, removing single stranded portions from reformed duplexes by treatment with S1 nuclease, and ligating the resulting fragment library into an expression vector. By this method, an expression library can be derived which encodes N-terminal and internal fragments of various sizes of the ORFX protein.


[0118] Several techniques are known in the art for screening gene products of combinatorial libraries made by point mutations or truncation, and for screening cDNA libraries for gene products having a selected property. Such techniques are adaptable for rapid screening of the gene libraries generated by the combinatorial mutagenesis of ORFX proteins. The most widely used techniques, which are amenable to high throughput analysis, for screening large gene libraries typically include cloning the gene library into replicable expression vectors, transforming appropriate cells with the resulting library of vectors, and expressing the combinatorial genes under conditions in which detection of a desired activity facilitates isolation of the vector encoding the gene whose product was detected. Recrusive ensemble mutagenesis (REM), a new technique that enhances the frequency of functional mutants in the libraries, can be used in combination with the screening assays to identify ORFX variants (Arkin and Yourvan (1992) PNAS 89:7811-7815; Delgrave et al. (1993) Protein Engineering 6:327-331).


[0119] Anti-ORFX Antibodies


[0120] The invention further encompasses antibodies and antibody fragments, such as Fab or (Fab)2, that bind immunospecifically to any of the proteins of the invention.


[0121] An isolated ORFX protein, or a portion or fragment thereof, can be used as an immunogen to generate antibodies that bind ORFX using standard techniques for polyclonal and monoclonal antibody preparation. Full-length ORFX protein can be used. Alternatively, the invention provides antigenic peptide fragments of ORFX for use as immunogens. The antigenic peptide of ORFX comprises at least 4 amino acid residues of the amino acid sequence shown in any of SEQ ID NO:2n (wherein n=1 to 4534). The antigenic peptide encompasses an epitope of ORFX such that an antibody raised against the peptide forms a specific immune complex with ORFX. The antigenic peptide may comprise at least 6 aa residues, at least 8 aa residues, at least 10 aa residues, at least 15 aa residues, at least 20 aa residues, or at least 30 aa residues. In one embodiment of the invention, the antigenic peptide comprises a polypeptide comprising at least 6 contiguous amino acids of any of SEQ ID NO:2n (wherein n=1 to 4534).


[0122] In an embodiment of the invention, epitopes encompassed by the antigenic peptide are regions of ORFX that are located on the surface of the protein, e.g., hydrophilic regions. As a means for targeting antibody production, hydropathy plots showing regions of hydrophilicity and hydrophobicity may be generated by any method well known in the art, including, for example, the Kyte Doolittle or the Hopp Woods methods, either with or without Fourier transformation. See, e.g., Hopp and Woods, 1981, Proc. Nat. Acad. Sci. USA 78: 3824-3828; Kyte and Doolittle 1982, J. Mol. Biol. 157: 105-142, each incorporated herein by reference in their entirety.


[0123] As disclosed herein, an ORFX protein sequence of any of SEQ ID NO:2n (wherein n=1 to 4534), or derivatives, fragments, analogs or homologs thereof, may be utilized as immunogens in the generation of antibodies that immunospecifically-bind these protein components. The term “antibody” as used herein refers to immunoglobulin molecules and immunologically active portions of immunoglobulin molecules, i.e., molecules that contain an antigen binding site that specifically binds (immunoreacts with) an antigen, such as ORFX. Such antibodies include, but are not limited to, polyclonal, monoclonal, chimeric, single chain, Fab and F(ab′)2 fragments, and an Fab expression library. In a specific embodiment, antibodies to human ORFX proteins are disclosed. Various procedures known within the art may be used for the production of polyclonal or monoclonal antibodies to a ORFX protein sequence of any of SEQ ID NO:2n (wherein n=1 to 4534) or derivative, fragment, analog or homolog thereof. Some of these proteins are discussed below.


[0124] For the production of polyclonal antibodies, various suitable host animals (e.g., rabbit, goat, mouse or other mammal) may be immunized by injection with the native protein, or a synthetic variant thereof, or a derivative of the foregoing. An appropriate immunogenic preparation can contain, for example, recombinantly expressed ORFX protein or a chemically synthesized ORFX polypeptide. The preparation can further include an adjuvant. Various adjuvants used to increase the immunological response include, but are not limited to, Freund's (complete and incomplete), mineral gels (e.g., aluminum hydroxide), surface active substances (e.g., lysolecithin, pluronic polyols, polyanions, peptides, oil emulsions, dinitrophenol, etc.), human adjuvants such as Bacille Calmette-Guerin and Corynebacterium parvum, or similar immunostimulatory agents. If desired, the antibody molecules directed against ORFX can be isolated from the mammal (e.g., from the blood) and further purified by well known techniques, such as protein A chromatography to obtain the IgG fraction.


[0125] The term “monoclonal antibody” or “monoclonal antibody composition”, as used herein, refers to a population of antibody molecules that contain only one species of an antigen binding site capable of immunoreacting with a particular epitope of ORFX. A monoclonal antibody composition thus typically displays a single binding affinity for a particular ORFX protein with which it immunoreacts. For preparation of monoclonal antibodies directed towards a particular ORFX protein, or derivatives, fragments, analogs or homologs thereof, any technique that provides for the production of antibody molecules by continuous cell line culture may be utilized. Such techniques include, but are not limited to, the hybridoma technique (see Kohler & Milstein, 1975 Nature 256: 495-497); the trioma technique; the human B-cell hybridoma technique (see Kozbor, et al., 1983 Immunol Today 4: 72) and the EBV hybridoma technique to produce human monoclonal antibodies (see Cole, et al., 1985 In: Monoclonal Antibodies and Cancer Therapy, Alan R. Liss, Inc., pp. 77-96). Human monoclonal antibodies may be utilized in the practice of the present invention and may be produced by using human hybridomas (see Cote, et al., 1983. Proc Natl Acad Sci USA 80: 2026-2030) or by transforming human B-cells with Epstein Barr Virus in vitro (see Cole, et al., 1985 In: Monoclonal Antibodies and Cancer Therapy, Alan R. Liss, Inc., pp. 77-96). Each of the above citations are incorporated herein by reference in their entirety


[0126] According to the invention, techniques can be adapted for the production of single-chain antibodies specific to a ORFX protein (see e.g., U.S. Pat. No. 4,946,778). In addition, methods can be adapted for the construction of Fab expression libraries (see e.g., Huse, et al., 1989 Science 246: 1275-1281) to allow rapid and effective identification of monoclonal Fab fragments with the desired specificity for a ORFX protein or derivatives, fragments, analogs or homologs thereof. Non-human antibodies can be “humanized” by techniques well known in the art. See e.g., U.S. Pat. No. 5,225,539. Each of the above citations are incorporated herein by reference. Antibody fragments that contain the idiotypes to a ORFX protein may be produced by techniques known in the art including, but not limited to: (i) an F(ab′)2 fragment produced by pepsin digestion of an antibody molecule; (ii) an Fab fragment generated by reducing the detect ORFX protein (e.g., in a cellular lysate or cell supernatant) in order to evaluate the abundance and pattern of expression of the ORFX protein. Anti-ORFX antibodies can be used diagnostically to monitor protein levels in tissue as part of a clinical testing procedure, e.g., to, for example, determine the efficacy of a given treatment regimen. Detection can be facilitated by coupling (i.e., physically linking) the antibody to a detectable substance. Examples of detectable substances include various enzymes, prosthetic groups, fluorescent materials, luminescent materials, bioluminescent materials, and radioactive materials. Examples of suitable enzymes include horseradish peroxidase, alkaline phosphatase, β-galactosidase, or acetylcholinesterase; examples of suitable prosthetic group complexes include streptavidin/biotin and avidintbiotin; examples of suitable fluorescent materials include umbelliferone, fluorescein, fluorescein isothiocyanate, rhodamine, dichlorotriazinylamine fluorescein, dansyl chloride or phycoerytlirin; an example of a luminescent material includes luminol; examples of bioluminescent materials include luciferase, luciferin, and aequorin, and examples of suitable radioactive material include 125I, 131I, 35S or 3H.


[0127] ORFX Recombinant Vectors and Host Cells


[0128] Another aspect of the invention pertains to vectors, preferably expression vectors, containing a nucleic acid encoding ORFX protein, or derivatives, fragments, analogs or homologs thereof. As used herein, the term “vector” refers to a nucleic acid molecule capable of transporting another nucleic acid to which it has been linked. One type of vector is a “plasmid”, which refers to a circular double stranded DNA loop into which additional DNA segments can be ligated. Another type of vector is a viral vector, wherein additional DNA segments can be ligated into the viral genome. Certain vectors are capable of autonomous replication in a host cell into which they are introduced (e.g., bacterial vectors having a bacterial origin of replication and episomal mammalian vectors). Other vectors (e.g., non-episomal mammalian vectors) are integrated into the genome of a host cell upon introduction into the host cell, and thereby are replicated along with the host genome. Moreover, certain vectors are capable of directing the expression of genes to which they are operatively linked. Such vectors are referred to herein as “expression vectors”. In general, expression vectors of utility in recombinant DNA techniques are often in the form of plasmids. In the present specification, “plasmid” and “vector” can be used interchangeably as the plasmid is the most commonly used form of vector. However, the invention is intended to include such other forms of expression vectors, such as viral vectors (e.g., replication defective retroviruses, adenoviruses and adeno-associated viruses), which serve equivalent functions.


[0129] The recombinant expression vectors of the invention comprise a nucleic acid of the invention in a form suitable for expression of the nucleic acid in a host cell, which means that the recombinant expression vectors include one or more regulatory sequences, selected on the basis of the host cells to be used for expression, that is operatively linked to the nucleic acid sequence to be expressed. Within a recombinant expression vector, “operably linked” is intended to mean that the nucleotide sequence of interest is linked to the regulatory sequence(s) in a manner that allows for expression of the nucleotide sequence (e.g., in an in vitro transcription/translation system or in a host cell when the vector is introduced into the host cell). The term “regulatory sequence” is intended to includes promoters, enhancers and other expression control elements (e.g., polyadenylation signals). Such regulatory sequences are described, for example, in Goeddel; Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Calif. (1990). Regulatory sequences include those that direct constitutive expression of a nucleotide sequence in many types of host cell and those that direct expression of the nucleotide sequence only in certain host cells (e.g., tissue-specific regulatory sequences). It will be appreciated by those skilled in the art that the design of the expression vector can depend on such factors as the choice of the host cell to be transformed, the level of expression of protein desired, etc. The expression vectors of the invention can be introduced into host cells to thereby produce proteins or peptides, including fusion proteins or peptides, encoded by nucleic acids as described herein (e.g., ORFX proteins, mutant forms of ORFX, fusion proteins, etc.).


[0130] The recombinant expression vectors of the invention can be designed for expression of ORFX in prokaryotic or eukaryotic cells. For example, ORFX can be expressed in bacterial cells such as E. coli, insect cells (using baculovirus expression vectors) yeast cells or mammalian cells. Suitable host cells are discussed further in Goeddel, Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Calif. (1990). Alternatively, the recombinant expression vector can be transcribed and translated in vitro, for example using T7 promoter regulatory sequences and T7 polymerase.


[0131] Expression of proteins in prokaryotes is most often carried out in E. coli with vectors containing constitutive or inducible promoters directing the expression of either fusion or non-fusion proteins. Fusion vectors add a number of amino acids to a protein encoded therein, usually to the amino terminus of the recombinant protein. Such fusion vectors typically serve three purposes: (1) to increase expression of recombinant protein; (2) to increase the solubility of the recombinant protein; and (3) to aid in the purification of the recombinant protein by acting as a ligand in affinity purification. Often, in fusion expression vectors, a proteolytic cleavage site is introduced at the junction of the fusion moiety and the recombinant protein to enable separation of the recombinant protein from the fusion moiety subsequent to purification of the fusion protein. Such enzymes, and their cognate recognition sequences, include Factor Xa, thrombin and enterokinase. Typical fusion expression vectors include pGEX (Pharmacia Biotech Inc; Smith and Johnson (1988) Gene 67:31-40), pMAL (New England Biolabs, Beverly, Mass.) and pRIT5 (Pharmacia, Piscataway, N.J.) that fuse glutathione S-transferase (GST), maltose E binding protein, or protein A, respectively, to the target recombinant protein.


[0132] Examples of suitable inducible non-fusion E. coli expression vectors include pTrc (Amrann et al., (1988) Gene 69:301-315) and pET 11d (Studier et al., Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Calif. (1990) 60-89).


[0133] One strategy to maximize recombinant protein expression in E. coli is to express the protein in a host bacteria with an impaired capacity to proteolytically cleave the recombinant protein. See, Gottesman, Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Calif. (1990) 119-128. Another strategy is to alter the nucleic acid sequence of the nucleic acid to be inserted into an expression vector so that the individual codons for each amino acid are those preferentially utilized in E. coli (Wada et al., (1992) Nucleic Acids Res. 20:2111-2118). Such alteration of nucleic acid sequences of the invention can be carried out by standard DNA synthesis techniques.


[0134] In another embodiment, the ORFX expression vector is a yeast expression vector. Examples of vectors for expression in yeast S. cerivisae include pYepSec1 (Baldari, et al., (1987) EMBO J 6:229-234), pMFa (Kurjan and Herskowitz, (1982) Cell 30:933-943), pJRY88 (Schultz et al., (1987) Gene 54:113-123), pYES2 (Invitrogen Corporation, San Diego, Calif.), and picZ (InVitrogen Corp, San Diego, Calif.).


[0135] Alternatively, ORFX can be expressed in insect cells using baculovirus expression vectors. Baculovirus vectors available for expression of proteins in cultured insect cells (e.g., SF9 cells) include the pAc series (Smith et al. (1983) Mol Cell Biol 3:2156-2165) and the pVL series (Lucklow and Summers (1989) Virology 170:31-39).


[0136] In yet another embodiment, a nucleic acid of the invention is expressed in mammalian cells using a mammalian expression vector. Examples of mammalian expression vectors include pCDM8 (Seed (1987) Nature 329:840) and pMT2PC (Kaufman et al. (1987) EMBO J 6: 187-195). When used in mammalian cells, the expression vector's control functions are often provided by viral regulatory elements. For example, commonly used promoters are derived from polyoma, Adenovirus 2, cytomegalovirus and Simian Virus 40. For other suitable expression systems for both prokaryotic and eukaryotic cells. See, e.g., Chapters 16 and 17 of Sambrook et al., Molecular Cloning: A Laboratory Manual. 2nd ed., Cold Spring Harbor Laboratory, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1989.


[0137] In another embodiment, the recombinant mammalian expression vector is capable of directing expression of the nucleic acid preferentially in a particular cell type (e.g., tissue-specific regulatory elements are used to express the nucleic acid). Tissue-specific regulatory elements are known in the art. Non-limiting examples of suitable tissue-specific promoters include the albumin promoter (liver-specific; Pinkert et al. (1987) Genes Dev 1:268-277), lymphoid-specific promoters (Calame and Eaton (1988) Adv Immunol 43:235-275), in particular promoters of T cell receptors (Winoto and Baltimore (1989) EMBO J 8:729-733) and immunoglobulins (Banerji et al. (1983) Cell 33:729-740; Queen and Baltimore (1983) Cell 33:741-748), neuron-specific promoters (e.g., the neurofilament promoter; Byrne and Ruddle (1989) PNAS 86:5473-5477), pancreas-specific promoters (Edlund et al. (1985) Science 230:912-916), and mammary gland-specific promoters (e.g.,.milk whey promoter; U.S. Pat. No. 4,873,316 and European Application Publication No. 264,166). Developmentally-regulated promoters are also encompassed, e.g., the murine hox promoters (Kessel and Gruss (1990) Science 249:374-379) and the α-fetoprotein promoter (Campes and Tilghman (1989) Genes Dev 3:537-546).


[0138] The invention further provides a recombinant expression vector comprising a DNA molecule of the invention cloned into the expression vector in an antisense orientation. That is, the DNA molecule is operatively linked to a regulatory sequence in a manner that allows for expression (by transcription of the DNA molecule) of an RNA molecule that is antisense to ORFX mRNA. Regulatory sequences operatively linked to a nucleic acid cloned in the antisense orientation can be chosen that direct the continuous expression of the antisense RNA molecule in a variety of cell types, for instance viral promoters and/or enhancers, or regulatory sequences can be chosen that direct constitutive, tissue specific, or cell type specific expression of antisense RNA. The antisense expression vector can be in the. form of a recombinant plasmid, phagemid or attenuated virus in which antisense nucleic acids are produced under the control of a high efficiency regulatory region, the activity of which can be determined by the cell type into which the vector is introduced. For a discussion of the regulation of gene expression using antisense genes see Weintraub et al., “Antisense RNA as a molecular tool for genetic analysis,” Reviews—Trends in Genetics, Vol. 1(1) 1986.


[0139] Another aspect of the invention pertains to host cells into which a recombinant expression vector of the invention has been introduced. The terms “host cell” and “recombinant host cell” are used interchangeably herein. It is understood that such terms refer not only to the particular subject cell but to the progeny or potential progeny of such a cell. Because certain modifications may occur in succeeding generations due to either mutation or environmental influences, such progeny may not, in fact, be identical to the parent cell, but are still included within the scope of the term as used herein.


[0140] A host cell can be any prokaryotic or eukaryotic cell. For example, ORFX protein can be expressed in bacterial cells such as E. coli, insect cells, yeast or mammalian cells (such as Chinese hamster ovary cells (CHO) or COS cells). Other suitable host cells are known to those skilled in the art.


[0141] Vector DNA can be introduced into prokaryotic or eukaryotic cells via conventional transformation or transfection techniques. As used herein, the terms “transformation” and “transfection” are intended to refer to a variety of art-recognized techniques for introducing foreign nucleic acid (e.g. DNA) into a host cell, including calcium phosphate or calcium chloride co-precipitation, DEAE-dextran-mediated transfection, lipofection, or electroporation. Suitable methods for transforming or transfecting host cells can be found in Sambrook, et al. (Molecular Cloning: A Laboratory Manual. 2nd ed., Cold Spring Harbor Laboratory, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1989), and other laboratory manuals.


[0142] For stable transfection of mammalian cells, it is known that, depending upon the expression vector and transfection technique used, only a small fraction of cells may integrate the foreign DNA into their genome. In order to identify and select these integrants, a gene that encodes a selectable marker (e.g., resistance to antibiotics) is generally introduced into the host cells along with the gene of interest. Various selectable markers include those that confer resistance to drugs, such as G418, hygromycin and methotrexate. Nucleic acid encoding a selectable marker can be introduced into a host cell on the same vector as that encoding ORFX or can be introduced on a separate vector. Cells stably transfected with the introduced nucleic acid can be identified by drug selection (e.g., cells that have incorporated the selectable marker gene will survive, while the other cells die).


[0143] A host cell of the invention, such as a prokaryotic or eukaryotic host cell in culture, can be used to produce (i.e., express) ORFX protein. Accordingly, the invention further provides methods for producing ORFX protein using the host cells of the invention. In one embodiment, the method comprises culturing the host cell of invention (into which a recombinant expression vector encoding ORFX has been introduced) in a suitable medium such that ORFX protein is produced. In another embodiment, the method further comprises isolating ORFX from the medium or the host cell.


[0144] Transgenic Animals


[0145] The host cells of the invention can also be used to produce nonhuman transgenic animals. For example, in one embodiment, a host cell of the invention is a fertilized oocyte or an embryonic stem cell into which ORFX-coding sequences have been introduced. Such host cells can then be used to create non-human transgenic animals in which exogenous ORFX sequences have been introduced into their genome or homologous recombinant animals in which endogenous ORFX sequences have been altered. Such animals are useful for studying the function and/or activity of ORFX and for identifying and/or evaluating modulators of ORFX activity. As used herein, a “transgenic animal” is a non-human animal, preferably a mammal, more preferably a rodent such as a rat or mouse, in which one or more of the cells of the animal includes a transgene. Other examples of transgenic animals include non-human primates, sheep, dogs, cows, goats, chickens, amphibians, etc. A transgene is exogenous DNA that is integrated into the genome of a cell from which a transgenic animal develops and that remains in the genome of the mature animal, thereby directing the expression of an encoded gene product in one or more cell types or tissues of the transgenic animal. As used herein, a “homologous recombinant animal” is a non-human animal, preferably a mammal, more preferably a mouse, in which an endogenous ORFX gene has been altered by homologous recombination between the endogenous gene and an exogenous DNA molecule introduced into a cell of the animal, e.g., an embryonic cell of the animal, prior to development of the animal.


[0146] A transgenic animal of the invention can be created by introducing ORFX-encoding nucleic acid into the male pronuclei of a fertilized oocyte, e.g., by microinjection, retroviral infection, and allowing the oocyte to develop in a pseudopregnant female foster animal. The human ORFX DNA sequence of SEQ ID NO:2n−1 (wherein n=1 to 4534) can be introduced as a transgene into the genome of a non-human animal. Alternatively, a nonhuman homologue of the human ORFX gene, such as a mouse ORFX gene, can be isolated based on hybridization to the human ORFX cDNA (described further above) and used as a transgene. Intronic sequences and polyadenylation signals can also be included in the transgene to increase the efficiency of expression of the transgene. A tissue-specific regulatory sequence(s) can be operably linked to the ORFX transgene to direct expression of ORFX protein to particular cells. Methods for generating transgenic animals via embryo manipulation and microinjection, particularly animals such as mice, have become conventional in the art and are described, for example, in U.S. Pat. Nos. 4,736,866; 4,870,009; and 4,873,191; and Hogan 1986, In: Manipulating the Mouse Embryo, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. Similar methods are used for production of other transgenic animals. A transgenic founder animal can be identified based upon the presence of the ORFX transgene in its genome and/or expression of ORFX mRNA in tissues or cells of the animals. A transgenic founder animal can then be used to breed additional animals carrying the transgene. Moreover, transgenic animals carrying a transgene encoding ORFX can further be bred to other transgenic animals carrying other transgenes.


[0147] To create a homologous recombinant animal, a vector is prepared which contains at least a portion of a ORFX gene into which a deletion, addition or substitution has been introduced to thereby alter, e.g., functionally disrupt, the ORFX gene. The ORFX gene can be a human gene (e.g., SEQ ID NO:2n−1 (wherein n=1 to 4534)), but more preferably, is a non-human homologue of a human ORFX gene. For example, a mouse homologue of human ORFX gene of SEQ ID NO:2n−1 (wherein n=1 to 4534) can be used to construct a homologous recombination vector suitable for altering an endogenous ORFX gene in the mouse genome. In one embodiment, the vector is designed such that, upon homologous recombination; the endogenous ORFX gene is functionally disrupted (i.e., no longer encodes a functional protein; also referred to as a “knock out” vector).


[0148] Alternatively, the vector can be designed such that, upon homologous recombination, the endogenous ORFX gene is mutated or otherwise altered but still encodes functional protein (e.g., the upstream regulatory region can be altered to thereby alter the expression of the endogenous ORFX protein). In the homologous recombination vector, the altered portion of the ORFX gene is flanked at its 5′ and 3′ ends by additional nucleic acid of the ORFX gene to allow for homologous recombination to occur between the exogenous ORFX gene carried by the vector and an endogenous ORFX gene in an embryonic stem cell. The additional flanking ORFX nucleic acid is of sufficient length for successful homologous recombination with the endogenous gene. Typically, several kilobases of flanking DNA (both at the 5′ and 3′ ends) are included in the vector. See e.g., Thomas et al. (1987) Cell 51:503 for a description of homologous recombination vectors. The vector is introduced into an embryonic stem cell line (e.g., by electroporation) and cells in which the introduced ORFX gene has homologously recombined with the endogenous ORFX gene are selected (see e.g., Li et al. (1992) Cell 69:915).


[0149] The selected cells are then injected into a blastocyst of an animal (e.g., a mouse) to form aggregation chimeras. See e.g., Bradley 1987, In: Teratocarcinomas and Embryonic Stem Cells: A Practical Approach, Robertson, ed. IRL, Oxford, pp. 113-152. A chimeric embryo can then be implanted into a suitable pseudopregnant female foster animal and the embryo brought to term. Progeny harboring the homologously recombined DNA in their germ cells can be used to breed animals in which all cells of the animal contain the homologously recombined DNA by germline transmission of the transgene. Methods for constructing homologous recombination vectors and homologous recombinant animals are described further in Bradley (1991) Curr Opin Biotechnol 2:823-829; PCT International Publication Nos.: WO 90/11354; WO 91/01140; WO 92/0968; and WO 93/04169.


[0150] In another embodiment, transgenic non-humans animals can be produced that contain selected systems that allow for regulated expression of the transgene. One example of such a


[0151] A pharmaceutical composition of the invention is formulated to be compatible with its intended route of administration. Examples of routes of administration include parenteral, e.g., intravenous, intradermal, subcutaneous, oral (e.g., inhalation), transdermal (topical), transmucosal, and rectal administration. Solutions or suspensions used for parenteral, intradermal, or subcutaneous application can include the following components: a sterile diluent such as water for injection, saline solution, fixed oils, polyethylene glycols, glycerine, propylene glycol or other synthetic solvents; antibacterial agents such as benzyl alcohol or methyl parabens; antioxidants such as ascorbic acid or sodium bisulfite; chelating agents such as ethylenediaminetetraacetic acid; buffers such as acetates, citrates or phosphates, and agents for the adjustment of tonicity such as sodium chloride or dextrose. The pH can be adjusted with acids or bases, such as hydrochloric acid or sodium hydroxide. The parenteral preparation can be enclosed in ampoules, disposable syringes or multiple dose vials made of glass or plastic.


[0152] Pharmaceutical compositions suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersion. For intravenous administration, suitable carriers include physiological saline, bacteriostatic water, Cremophor EL™ (BASF, Parsippany, N.J.) or phosphate buffered saline (PBS). In all cases, the composition must be sterile and should be fluid to the extent that easy syringeability exists. It must be stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi. The carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (for example, glycerol, propylene glycol, and liquid polyethylene glycol, and the like), and suitable mixtures thereof. The proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants. Prevention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, polyalcohols such as manitol, sorbitol, sodium chloride in the composition. Prolonged absorption of the injectable compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminum monostearate and gelatin.


[0153] Sterile injectable solutions can be prepared by incorporating the active compound (e g., a ORFX protein or anti-ORFX antibody) in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the active compound into a sterile vehicle that contains a basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, methods of preparation are vacuum drying and freeze-drying that yields a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.


[0154] Oral compositions generally include an inert diluent or an edible carrier. They can be enclosed in gelatin capsules or compressed into tablets. For the purpose of oral therapeutic administration, the active compound can be incorporated with excipients and used in the form of tablets, troches, or capsules. Oral compositions can also be prepared using a fluid carrier for use as a mouthwash, wherein the compound in the fluid carrier is applied orally and swished and expectorated or swallowed. Pharmaceutically compatible binding agents, and/or adjuvant materials can be included as part of the composition. The tablets, pills, capsules, troches and the like can contain any of the following ingredients, or compounds of a similar nature: a binder such as microcrystalline cellulose, gum tragacanth or gelatin; an excipient such as starch or lactose, a disintegrating agent such as alginic acid, Primogel, or corn starch; a lubricant such as magnesium stearate or Sterotes; a glidant such as colloidal silicon dioxide; a sweetening agent such as sucrose or saccharin; or a flavoring agent such as peppermint, methyl salicylate, or orange flavoring.


[0155] For administration by inhalation, the compounds are delivered in the form of an aerosol spray from pressured container or dispenser which contains a suitable propellant, e.g., a gas such as carbon dioxide, or a nebulizer.


[0156] Systemic administration can also be by transmucosal or transdermal means. For transmucosal or transdermal administration, penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are, generally known in the art, and include, for example, for transmucosal administration, detergents, bile salts, and fusidic acid derivatives. Transmucosal administration can be accomplished through the use of nasal sprays or suppositories. For transdermal administration, the active compounds are formulated into ointments, salves, gels, or creams as generally known in the art.


[0157] The compounds can also be prepared in the form of suppositories (e.g., with conventional suppository bases such as cocoa butter and other glycerides) or retention enemas for rectal delivery.


[0158] In one embodiment, the active compounds are prepared with carriers that will protect the compound against rapid elimination from the body, such as a controlled release formulation, including implants and microencapsulated delivery systems. Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters, and polylactic acid. Methods for preparation of such formulations will be apparent to those skilled in the art. The materials can also be obtained commercially from Alza Corporation and Nova Pharmaceuticals, Inc. Liposomal suspensions (including liposomes targeted to infected cells with monoclonal antibodies to viral antigens) can also be used as pharmaceutically acceptable carriers. These can be prepared according to methods known to those skilled in the art, for example, as described in U.S. Pat. No. 4,522,811.


[0159] It is especially advantageous to formulate oral or parenteral compositions in dosage unit form for ease of administration and uniformity of dosage. Dosage unit form as used herein refers to physically discrete units suited as unitary dosages for the subject to be treated; each unit containing a predetermined quantity of active compound calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier. The specification for the dosage unit forms of the invention are dictated by and directly dependent on the unique characteristics of the active compound and the particular therapeutic effect to be achieved.


[0160] The nucleic acid molecules of the invention can be inserted into vectors and used as gene therapy vectors. Gene therapy vectors can be delivered to a subject by any of a number of routes, e.g., as described in U.S. Pat. No. 5,703,055. Delivery can thus also include, e.g., intravenous injection, local administration (see U.S. Pat. No. 5,328,470) or stereotactic injection (see e.g., Chen et al. (1994) PNAS 91:3054-3057). The pharmaceutical preparation of the gene therapy vector can include the gene therapy vector in an acceptable diluent, or can comprise a slow release matrix in which the gene delivery vehicle is imbedded. Alternatively, where the complete gene delivery vector can be produced intact from recombinant cells, e.g., retroviral vectors, the pharmaceutical preparation can include one or more cells that produce the gene delivery system.


[0161] The pharmaceutical compositions can be included in a container, pack, or dispenser together with instructions for administration.


[0162] Additional Uses and Methods of the Invention


[0163] The nucleic acid molecules, proteins, protein homologues, and antibodies described herein can be used in one or more of the following methods: (a) screening assays; (b) detection assays (e.g., chromosomal mapping, cell and tissue typing, forensic biology), (c) predictive medicine (e.g., diagnostic assays, prognostic assays, monitoring clinical trials, and pharmacogenomics); and (d) methods of treatment (e.g., therapeutic and prophylactic).


[0164] The isolated nucleic acid molecules of the invention can be used to express ORFX protein (e.g., via a recombinant expression vector in a host cell in gene therapy applications), to detect ORFX mRNA (e.g., in a biological sample) or a genetic lesion in a ORFX gene, and to modulate ORFX activity, as described further below. In addition, the ORFX proteins can be used to screen drugs or compounds that modulate the ORFX activity or expression as well as to treat disorders characterized by insufficient or excessive production of ORFX protein, for example proliferative or differentiative disorders, or production of ORFX protein forms that have decreased or aberrant activity compared to ORFX wild type protein. In addition, the anti-ORFX antibodies of the invention can be used to detect and isolate ORFX proteins and modulate ORFX activity.


[0165] This invention further pertains to novel agents identified by the above described screening assays and uses thereof for treatments as described herein.


[0166] Screening Assays


[0167] The invention provides a method (also referred to herein as a “screening assay”) for identifying modulators, i.e., candidate or test compounds or agents (e.g., peptides, peptidomimetics, small molecules or other drugs) that bind to ORFX proteins or have a stimulatory or inhibitory effect on, for example, ORFX. expression or ORFX activity.


[0168] In one embodiment, the invention provides assays for screening candidate or test compounds which bind to or modulate the activity of a ORFX protein or polypeptide or biologically active portion thereof. The test compounds of the present invention can be obtained using any of the numerous approaches in combinatorial library methods known in the art, including: biological libraries; spatially addressable parallel solid phase or solution phase libraries; synthetic library methods requiring deconvolution; the “one-bead one-compound” library method; and synthetic library methods using affinity chromatography selection. The biological library approach is limited to peptide libraries, while the other four approaches are applicable to peptide, non-peptide oligomer or small molecule libraries of compounds (Lam (1997) Anticancer Drug Des 12:145).


[0169] Examples of methods for the synthesis of molecular libraries can be found in the art, for example in: DeWitt et al. (1993) Proc Natl Acad Sci U.S.A. 90:6909; Erb et al. (1994) Proc Natl Acad Sci U.S.A. 91:11422; Zuckermann et al. (1994) J Med Chem 37:2678; Cho et al. (1993) Science 261:1303; Carrell et.al. (1994) Angew Chem Int Ed Engl 33:2059; Carell et.al. (1994) Angew Chem Int Ed Engl 33:2061; and Gallop et al. (1994) J Med Chem 37:1233.


[0170] Libraries of compounds may be presented in solution (e.g., Houghten (1992) Biotechniques 13:412-421), or on beads (Lam (1991) Nature 354:82-84), on chips (Fodor (1993) Nature 364:555-556), bacteria (Ladner U.S. Pat. No. 5,223,409), spores (Ladner U.S. Pat. No. '409), plasmids (Cull et al. (1992) Proc Natl Acad Sci USA 89:1865-1869) or on phage (Scott and Smith (1990) Science 249:386-390; Devlin (1990) Science 249:404-406; Cwirla et.al. (1990) Proc Natl Acad Sci U.S.A. 87:6378-6382; Felici (1991) J Mol Biol 222:301-310; Ladner above.).


[0171] In one embodiment, an assay is a cell-based assay in which a cell which expresses a membrane-bound form of ORFX protein, or a biologically active portion thereof, on the cell surface is contacted with a test compound and the ability of the test compound to bind to a ORFX protein determined. The cell, for example, can of mammalian origin or a yeast cell. Determining the ability of the test compound to bind to the ORFX protein can be accomplished, for example, by coupling the test compound with a radioisotope or enzymatic label such that binding of the test compound to the ORFX protein or biologically active portion thereof can be determined by detecting the labeled compound in a complex. For example, test compounds can be labeled with 125I, 35S, 14C, or 3H, either directly or indirectly, and the radioisotope detected by direct counting of radioemission or by scintillation counting. Alternatively, test compounds can be enzymatically labeled with, for example, horseradish peroxidase, alkaline phosphatase, or luciferase, and the enzymatic label detected by determination of conversion of an appropriate substrate to product. In one embodiment, the assay comprises contacting a cell which expresses a membrane-bound form of ORFX protein, or a biologically active portion thereof, on the cell surface with a known compound which binds ORFX to form an assay mixture, contacting the assay mixture with a test compound, and determining the ability of the test compound to interact with a ORFX protein, wherein determining the ability of the test compound to interact with a ORFX protein comprises determining the ability of the test compound to preferentially bind to ORFX or a biologically active portion thereof as compared to the known compound.


[0172] In another embodiment, an assay is a cell-based assay comprising contacting a cell expressing a membrane-bound form of ORFX protein, or a biologically active portion thereof, on the cell surface with a test compound and determining the ability of the test compound to modulate (e.g., stimulate or inhibit) the activity of the ORFX protein or biologically active portion thereof. Determining the ability of the test compound to modulate the activity of ORFX or a biologically active portion thereof can be accomplished, for example, by determining the ability of the ORFX protein to bind to or interact with a ORFX target molecule. As used herein, a “target molecule” is a molecule with which a ORFX protein binds or interacts in nature, for example, a molecule on the surface of a cell which expresses a ORFX interacting protein, a molecule on the surface of a second cell, a molecule in the extracellular milieu, a molecule associated with the internal surface of a cell membrane or a cytoplasmic molecule. A ORFX target molecule can be a non-ORFX molecule or a ORFX protein or polypeptide of the present invention. In one embodiment, a ORFX target molecule is a component of a signal transduction pathway that facilitates transduction of an extracellular signal (e.g., a signal generated by binding of a compound to a membrane-bound ORFX molecule) through the cell membrane and into the cell. The target, for example, can be a second intercellular protein that has catalytic activity or a protein that facilitates the association of downstream signaling molecules with ORFX.


[0173] Determining the ability of the ORFX protein to bind to or interact with a ORFX target molecule can be accomplished by one of the methods described above for determining direct binding. In one embodiment, determining the ability of the ORFX protein to bind to or interact with a ORFX target molecule can be accomplished by determining the activity of the target molecule. For example, the activity of the target molecule can be determined by detecting induction of a cellular second messenger of the target (i.e. intracellular Ca2+, diacylglycerol, IP3, etc.), detecting catalytic/enzymatic activity of the target an appropriate substrate, detecting the induction of a reporter gene (comprising a ORFX-responsive regulatory element operatively linked to a nucleic acid encoding a detectable marker, e.g., luciferase), or detecting a cellular response, for example, cell survival, cellular differentiation, or cell proliferation.


[0174] In yet another embodiment, an assay of the present invention is a cell-free assay comprising contacting a ORFX protein or biologically active portion thereof with a test compound and determining the ability of the test compound to bind to the ORFX protein or biologically active portion thereof. Binding of the test compound to the ORFX protein can be determined either directly or indirectly as described above. In one embodiment, the assay comprises contacting the ORFX protein or biologically active portion thereof with a known compound which binds ORFX to form an assay mixture, contacting the assay mixture with a test compound, and determining the, ability of the test compound to interact with a ORFX protein, wherein determining the ability of the test compound to interact with a ORFX protein comprises determining the ability of the test compound to preferentially bind to ORFX or biologically active portion thereof as compared to the known compound.


[0175] In another embodiment, an assay is a cell-free assay comprising contacting ORFX protein or biologically active portion thereof with a test compound and determining the ability of the test compound to modulate (e.g., stimulate or inhibit) the activity of the ORFX protein or biologically active portion thereof. Determining the ability of the test compound to modulate the activity of ORFX can be accomplished, for example, by determining the ability of the ORFX protein to bind to a ORFX target molecule by one of the methods described above for determining direct binding. In an alternative embodiment, determining the ability of the test compound to modulate the activity of ORFX can be accomplished by determining the ability of the ORFX protein further modulate a ORFX target molecule. For example, the catalytic/enzymatic activity of the target molecule on an appropriate substrate can be determined as previously described.


[0176] In yet another embodiment, the cell-free assay comprises contacting the ORFX protein or biologically active portion thereof with a known compound which binds ORFX to form an assay mixture, contacting the assay mixture with a test compound, and determining the ability of the test compound to interact with a ORFX protein, wherein determining the ability of the test compound to interact with a ORFX protein comprises determining the ability of the ORFX protein to preferentially bind to or modulate the activity of a ORFX target molecule.


[0177] The cell-free assays of the present invention are amenable to use of both the soluble form or the membrane-bound form of ORFX. In the case of cell-free assays comprising the membrane-bound form of ORFX, it may be desirable to utilize a solubilizing agent such that the membrane-bound form of ORFX is maintained in solution. Examples of such solubilizing agents include non-ionic detergents such as n-octylglucoside, n-dodecylglucoside, n-dodecylmaltoside, octanoyl-N-methylglucamide, decanoyl-N-methylglucamide, Triton® X-100, Tritono® X-114, Thesit®, Isotridecypoly(ethylene glycol ether)n, N-dodecyl—N,N-dimethyl-3-ammonio-1-propane sulfonate, 3-(3-cholaridopropyl)dimethylamminiol-1-propane sulfonate (CHAPS), or 3-(3-cholamidopropyl)dimethylamminiol-2-hydroxy-1-propane sulfonate (CHAPSO).


[0178] In more than one embodiment of the above assay methods of the present invention, it may be desirable to immobilize either ORFX or its target molecule to facilitate separation of complexed from uncomplexed forms of one or both of the proteins, as well as to accommodate automation of the assay. Binding of a test compound to ORFX, or interaction of ORFX with a target molecule in the presence and absence of a candidate compound, can be accomplished in any vessel suitable for containing the reactants. Examples of such vessels include microtiter plates, test tubes, and micro-centrifuge tubes. In one embodiment, a fusion protein can be provided that adds a domain that allows one or both of the proteins to be bound to a matrix. For example, GST-ORFX fusion proteins or GST-target fusion proteins can be adsorbed onto glutathione sepharose beads (Sigmna Chemical, St. Louis, Mo.) or glutathione derivatized microtiter plates, that are then combined with the test compound or the test compound and either the non-adsorbed target protein or ORFX protein, and the mixture is incubated under conditions conducive to complex formation (e.g., at physiological conditions for salt and pH). Following incubation, the beads or microtiter plate wells are washed to remove any unbound components, the matrix immobilized in the case of beads, complex determined either directly or indirectly, for example, as described above. Alternatively, the complexes can be dissociated from the matrix, and the level of ORFX binding or activity determined using standard techniques.


[0179] Other techniques for immobilizing proteins on matrices can also be used in the screening assays of the invention. For example, either ORFX or its target molecule can be immobilized utilizing conjugation of biotin and streptavidin. Biotinylated ORFX or target molecules can be prepared from biotin-NHS (N-hydroxy-succinimide) using techniques well known in the art (e.g., biotinylation kit, Pierce Chemicals, Rockford, Ill.), and immobilized in the wells of streptavidin-coated 96 well plates (Pierce Chemical). Alternatively, antibodies reactive with ORFX or target molecules, but which do not interfere with binding of the ORFX protein to its target molecule, can be derivatized to the wells of the plate, and unbound target or ORFX trapped in the wells by antibody conjugation. Methods for detecting such complexes, in addition to those described above for the GST-immobilized complexes, include immunodetection of complexes using antibodies reactive with the ORFX or target molecule, as well as enzyme-linked assays that rely on detecting an enzymatic activity associated with the ORFX or target molecule.


[0180] In another embodiment, modulators of ORFX expression are identified in a method wherein a cell is contacted with a candidate compound and the expression of ORFX mRNA or protein in the cell is determined. The level of expression of ORFX mRNA or protein in the presence of the candidate compound is compared to the level of expression of ORFX mRNA or protein in the absence of the candidate compound. The candidate compound can then be identified as a modulator of ORFX expression based on this comparison. For example, when expression of ORFX mRNA or protein is greater (statistically significantly greater) in the presence of the candidate compound than in its absence, the candidate compound is identified as a stimulator of ORFX mRNA or protein expression. Alternatively, when expression of ORFX mRNA or protein is less (statistically significantly less) in the presence of the candidate compound than in its absence, the candidate compound is identified as an inhibitor of ORFX mRNA or protein expression. The level of ORFX mRNA or protein expression in the cells can be determined by methods described herein for detecting ORFX mRNA or protein.


[0181] In yet another aspect of the invention, the ORFX proteins can be used as “bait proteins” in a two-hybrid assay or three hybrid assay (see, e.g., U.S. Pat. No. 5,283,317; Zervos et al. (1993) Cell 72:223-232; Madura et al. (1993) J Biol Chem 268:12046-12054; Bartel et al. (1993) Biotechniques 14:920-924; Iwabuchi et al. (1993) Oncogene 8:1693-1696; and Brent WO94/10300), to identify other proteins that bind to or interact with ORFX (“ORFX-binding proteins” or “ORFX-bp”) and modulate ORFX activity. Such ORFX-binding proteins are also likely to be involved in the propagation of signals by the ORFX proteins as, for example, upstream or downstream elements of the ORFX pathway.


[0182] The two-hybrid system is based on the modular nature of most transcription factors, which consist of separable DNA-binding and activation domains. Briefly, the assay utilizes two different DNA constructs. In one construct, the gene that codes for ORFX is fused to a gene encoding the DNA binding domain of a known transcription factor (e.g., GAL-4). In the other construct, a DNA sequence, from a library of DNA sequences, that encodes an unidentified protein (“prey” or “sample”) is fused to a gene that codes for the activation domain of the known transcription factor. If the “bait” and the “prey” proteins are able to interact, in vivo, forming a ORFX-dependent complex, the DNA-binding and activation domains of the transcription factor are brought into close proximity. This proximity allows transcription of a reporter gene (e.g., LacZ) that is operably linked to a transcriptional regulatory site responsive to the transcription factor. Expression of the reporter gene can be detected and cell colonies containing the functional transcription factor can be isolated and used to obtain the cloned gene that encodes the protein which interacts with ORFX.


[0183] This invention further pertains to novel agents identified by the above-described screening assays and uses thereof for treatments as described herein.


[0184] Detection Assays


[0185] Portions or fragments of the cDNA sequences identified herein (and the corresponding complete gene sequences) can be used in numerous ways as polynucleotide reagents. For example, these sequences can be used to: (i) map their respective genes on a chromosome; and, thus, locate gene regions associated with genetic disease; (ii) identify an individual from a minute biological sample (tissue typing); and (iii) aid in forensic identification of a biological sample.


[0186] The ORFX sequences of the present invention can also be used to identify individuals from minute biological samples. In this technique, an individual's genomic DNA is digested with one or more restriction enzymes, and probed on a Southern blot to yield unique bands for identification. The sequences of the present invention are useful as additional DNA markers for RFLP (“restriction fragment length polymorphisms,” described in U.S. Pat. No. 5,272,057).


[0187] Furthermore, the sequences of the present invention can be used to provide an alternative technique that determines the actual base-by-base DNA sequence of selected portions of an individual's genome. Thus, the ORFX sequences described herein can be used to prepare two PCR primers from the 5′ and 3′ ends of the sequences. These primers can then be used to amplify an individual's DNA and subsequently sequence it.


[0188] Panels of corresponding DNA sequences from individuals, prepared in this manner, can provide unique individual identifications, as each individual will have a unique set of such DNA sequences due to allelic differences. The sequences of the present invention can be used to obtain such identification sequences from individuals and from tissue. The ORFX sequences of the invention uniquely represent portions of the human genome. Allelic variation occurs to some degree in the coding regions of these sequences, and to a greater degree in the noncoding regions. It is estimated that allelic variation between individual humans occurs with a frequency of about once per each 500 bases. Much of the allelic variation is due to single nucleotide polymorphisms (SNPs), which include restriction fragment length polymorphisms (RFLPs).


[0189] Each of the sequences described herein can, to some degree, be used as a standard against which DNA from an individual can be compared for identification purposes. Because greater numbers of polymorphisms occur in the noncoding regions, fewer sequences are necessary to differentiate individuals. The noncoding sequences of SEQ ID NO:2n−1 (wherein n=1 to 4534), as described above, can comfortably provide positive individual identification with a panel of perhaps 10 to 1,000 primers that each yield a noncoding amplified sequence of 100 bases. If predicted coding sequences are used, a more appropriate number of primers for positive individual identification would be 500-2,000.


[0190] Predictive Medicine


[0191] The present invention also pertains to the field of predictive medicine in which diagnostic assays, prognostic assays, pharmacogenomics, and monitoring clinical trials are used for prognostic (predictive) purposes to thereby treat an individual prophylactically. Accordingly, one aspect of the present invention relates to diagnostic assays for determining ORFX protein and/or nucleic acid expression as well as ORFX activity, in the context of a biological sample (e.g., blood, serum, cells, tissue) to thereby determine whether an individual is afflicted with a disease or disorder, or is at risk of developing a disorder, associated with aberrant ORFX expression or activity. The invention also provides for prognostic (or predictive) assays for determining whether an individual is at risk of developing a disorder associated with ORFX protein, nucleic acid expression or activity. For example, mutations in a ORFX gene can be assayed in a biological sample. Such assays can be used for prognostic or predictive purpose to thereby prophylactically treat an individual prior to the onset of a disorder characterized by or associated with ORFX protein, nucleic acid expression or activity.


[0192] Another aspect of the invention provides methods for determining ORFX protein, nucleic acid expression or ORFX activity in an individual to thereby. select appropriate therapeutic or prophylactic agents for that individual (referred to herein as “pharmacogenomics”). Pharmacogenomics allows for the selection of agents (e.g., drugs) for therapeutic or prophylactic treatment of an individual based on the genotype of the individual (e.g., the genotype of the individual examined to determine the ability of the individual to respond to a particular agent.)


[0193] Yet another aspect of the invention pertains to monitoring the influence of agents (e.g., drugs, compounds) on the expression or activity of ORFX in clinical trials.


[0194] Use of Partial ORFX Sequences in Forensic Biology


[0195] DNA-based identification techniques can also be used in forensic biology. Forensic biology is a scientific field employing genetic typing of biological evidence found at a crime scene as a means for positively identifying, for example, a perpetrator of a crime. To make such an identification, PCR technology can be used to amplify DNA sequences taken from very small biological samples such as tissues, e.g., hair or skin, or body fluids, e.g., blood, saliva, or semen found at a crime scene. The amplified sequence can then be compared to a standard, thereby allowing identification of the origin of the biological sample.


[0196] The sequences of the present invention can be used to provide polynucleotide reagents, e.g., PCR primers, targeted to specific loci in the human genome, that can enhance the reliability of DNA-based forensic identifications by, for example, providing another “identification marker” (i.e. another DNA sequence that is unique to a particular individual). As mentioned above, actual base sequence information can be used for identification as an accurate alternative to patterns formed by restriction enzyme generated fragments. Sequences targeted to noncoding regions of SEQ ID NOs:_ are particularly appropriate for this use as greater numbers of polymorphisms occur in the noncoding regions, making it easier to differentiate individuals using this technique. Examples of polynucleotide reagents include the ORFX sequences or portions thereof, e.g., fragments derived from the noncoding regions of one or more of SEQ ID NO:2n−1 (where n=1 to 4534), having a length of at least 20 bases, preferably at least 30 bases.


[0197] The ORFX sequences described herein can further be used to provide polynucleotide reagents, e.g., labeled or label-able probes that can be used, for example, in an in situ hybridization technique, to identify a specific tissue, e.g., brain tissue, etc. This can be very useful in cases where a forensic pathologist is presented with a tissue of unknown origin. Panels of such ORFX probes can be used to identify tissue by species and/or by organ type.


[0198] In a similar fashion, these reagents, e.g., ORFX primers or probes can be used to screen tissue culture for contamination (i.e. screen for the presence of a mixture of different types of cells in a culture).


[0199] Predictive Medicine


[0200] The present invention also pertains to the field of predictive medicine in which diagnostic assays, prognostic assays, pharmacogenomics, and monitoring clinical trials are used for prognostic (predictive) purposes to thereby treat an individual prophylactically. Accordingly, one aspect of the present invention relates to diagnostic assays for determining ORFX protein and/or nucleic acid expression as well as ORFX activity, in the context of a biological sample (e.g., blood, serum, cells, tissue) to thereby determine whether an individual is afflicted with a disease or disorder, or is at risk of developing a disorder, associated with aberrant ORFX expression or activity. The invention also provides for prognostic (or predictive) assays for determining whether an individual is at risk of developing a disorder associated with ORFX protein, nucleic acid expression or activity. For example, mutations in a ORFX gene can be assayed in a biological sample. Such assays can be used for prognostic or predictive purpose to thereby prophylactically treat an individual prior to the onset of a disorder characterized by or associated with ORFX protein, nucleic acid expression or activity.


[0201] Another aspect of the invention provides methods for determining ORFX protein, nucleic acid expression or ORFX activity in an individual to thereby select appropriate therapeutic or prophylactic agents for that individual (referred to herein as “pharmacogenomics”). Pharmacogenomics allows for the selection of agents (e.g., drugs) for therapeutic or prophylactic treatment of an individual based on the genotype of the individual (e.g., the genotype of the individual examined to determine the ability of the individual to respond to a particular agent.)


[0202] Yet another aspect of the invention pertains to monitoring the influence of agents (e.g., drugs, compounds) on the expression or activity of ORFX in clinical trials.


[0203] These and other agents are described in further detail in the following sections.


[0204] Diagnostic Assays


[0205] Other conditions in which proliferation of cells plays a role include tumors, restenosis, psoriasis, Dupuytren's contracture, diabetic complications, Kaposi's sarcoma and rheumatoid arthritis.


[0206] An ORFX polypeptide may be used to identify an interacting polypeptide a sample or tissue. The method comprises contacting the sample or tissue with ORFX, allowing formation of a complex between the ORFX polypeptide and the interacting polypeptide, and detecting the complex, if present.


[0207] The proteins of the invention may be used to stimulate production of antibodies specifically binding the proteins. Such antibodies may be used in immunodiagnostic procedures to detect the occurrence of the protein in a sample. The proteins of the invention may be used to stimulate cell growth and cell proliferation in conditions in which such growth would be favorable. An example would be to counteract toxic side effects of chemotherapeutic agents on, for example, hematopoiesis and platelet formation, linings of the gastrointestinal tract, and hair follicles. They may also be used to stimulate new cell growth in neurological disorders including, for example, Alzheimer's disease. Alternatively, antagonistic treatments may be administered in which an antibody specifically binding the ORFX-like proteins of the invention would abrogate the specific growth-inducing effects of the proteins. Such antibodies may be useful, for example, in the treatment of proliferative disorders including various tumors and benign hyperplasias.


[0208] Polynucleotides or oligonucleotides corresponding to any one portion of the ORFX nucleic acids of SEQ ID NO:2n−1 (wherein n=1 to 4534) may be used to detect DNA containing a corresponding ORF gene, or detect the expression of a corresponding ORFX gene, or ORFX-like gene. For example, an ORFX nucleic acid expressed in a particular cell or tissue, as noted in Table 2, can be used to identify the presence of that particular cell type.


[0209] An exemplary method for detecting the presence or absence of ORFX in a biological sample involves obtaining a biological sample from a test subject and contacting the biological sample with a compound or an agent capable of detecting ORFX protein or nucleic acid (e.g., mRNA, genomic DNA) that encodes ORFX protein such that the presence of ORFX is detected in the biological sample. An agent for detecting ORFX mRNA or genomic DNA is a labeled nucleic acid probe capable of hybridizing to ORFX mRNA or genomic DNA. The nucleic acid probe can be, for example, a full-length ORFX nucleic acid, such as the nucleic acid of SEQ ID NO:2n−1 (wherein n=1 to 4534), or a portion thereof, such as an oligonucleotide of at least 15, 30, 50, 100, 250 or 500 nucleotides in length and sufficient to specifically hybridize under stringent conditions to ORFX mRNA or genomic DNA, as described above. Other suitable probes for use in the diagnostic assays of the invention are described herein.


[0210] An agent for detecting ORFX protein is an antibody capable of binding to ORFX protein, preferably an antibody with a detectable label. Antibodies can be polyclonal, or more preferably, monoclonal. An intact antibody, or a fragment thereof (e.g., Fab or F(ab′)2) can be used. The term “labeled”, with regard to the probe or antibody, is intended to encompass direct labeling of the probe or antibody by coupling (i.e., physically linking) a detectable substance to the probe or antibody, as well as indirect labeling of the probe or antibody by reactivity with another reagent that is directly labeled. Examples of indirect labeling include detection of a primary antibody using a fluorescently labeled secondary antibody and end-labeling of a DNA probe with biotin such that it can be detected with fluorescently labeled streptavidin. The term “biological sample” is intended to include tissues, cells and biological fluids isolated from a subject, as well as tissues, cells and fluids present within a subject. That is, the detection method of the invention can be used to detect ORFX mRNA, protein, or genomic DNA in a biological sample in vitro as well as in vivo. For example, in vitro techniques for detection of ORFX mRNA include Northern hybridizations and in situ hybridizations. In vitro techniques for detection of ORFX protein include enzyme linked immunosorbent assays (ELISAs), Western blots, immunoprecipitations and immunofluorescence. In vitro techniques for detection of ORFX genomic DNA include Southern hybridizations. Furthermore, in vivo techniques for detection of ORFX protein include introducing into a subject a labeled anti-ORFX antibody. For example, the antibody can be labeled with a radioactive marker whose presence and location in a subject can be detected by standard imaging techniques.


[0211] In one embodiment, the biological sample contains protein molecules from the test subject. Alternatively, the biological sample can contain mRNA molecules from the test subject or genomic DNA molecules from the test subject. A preferred biological sample is a peripheral blood leukocyte sample isolated by conventional means from a subject.


[0212] In another embodiment, the methods further involve obtaining a control biological sample from acontrol subject, contacting the control sample with a compound or agent capable of detecting ORFX protein, mRNA, or genomic DNA, such that the presence of ORFX protein, mRNA or genomic DNA is detected in the biological sample, and comparing the presence of ORFX protein, mRNA or genomic DNA in the control sample with the presence of ORFX protein, mRNA or genomic DNA in the test sample.


[0213] The invention also encompasses kits for detecting the presence of ORFX in a biological sample. For example, the kit can comprise: a labeled compound or agent capable of detecting ORFX protein or mRNA in a biological sample; means for determining the amount of ORFX in the sample; and means for comparing the amount of ORFX in the sample with a standard. The compound or agent can be packaged in a suitable container. The kit can further comprise instructions for using the kit to detect ORFX protein or nucleic acid.


[0214] Prognostic Assays


[0215] The diagnostic methods described herein can furthermore be utilized to identify subjects having or at risk of developing a disease or disorder associated with aberrant ORFX expression or activity. For example, the assays described herein, such as the preceding diagnostic assays or the following assays, can be utilized to identify a subject having or at risk of developing a disorder associated with ORFX protein, nucleic acid expression or activity in, e.g., proliferative or differentiative disorders such as hyperplasias, tumors, restenosis, psoriasis, Dupuytren's contracture, diabetic complications, or rheumatoid arthritis, etc.; and glia-associated disorders such as cerebral lesions, diabetic neuropathies, cerebral edema, senile dementia, Alzheimer's disease, etc. Alternatively, the prognostic assays can be utilized to identify a subject having or at risk for developing a disease or disorder. Thus, the present invention provides a method for identifying a disease or disorder associated with aberrant ORFX expression or activity in which a test sample is obtained from a subject and ORFX protein or nucleic acid (e.g., mRNA, genomic DNA) is detected, wherein the presence of ORFX protein or nucleic acid is diagnostic for a subject having or at risk of developing a disease or disorder associated with aberrant ORFX expression or activity. As used herein, a “test sample” refers to a biological sample obtained from a subject of interest. For example, a test sample can be a biological fluid (e.g., serum), cell sample, or tissue.


[0216] Furthermore, the prognostic assays described herein can be used to determine whether a subject can be administered an agent (e.g., an agonist, antagonist, peptidomimetic, protein, peptide, nucleic acid, small molecule, or other drug candidate) to treat a disease or disorder associated with aberrant ORFX expression or activity. For example, such methods can be used to determine whether a subject can be effectively treated with an agent for a disorder, such as a proliferative disorder, differentiative disorder, glia-associated disorders, etc. Thus, the present invention provides methods for determining whether a subject can be effectively treated with an agent for a disorder associated with aberrant ORFX expression or activity in which a test sample is obtained and ORFX protein or nucleic acid is detected (e.g., wherein the presence of ORFX protein or nucleic acid is diagnostic for a subject that can be administered the agent to treat a disorder associated with aberrant ORFX expression or activity.)


[0217] The methods of the invention can also be used to detect genetic lesions in a ORFX gene, thereby determining if a subject with the lesioned gene is at risk for, or suffers from, a proliferative disorder, differentiative disorder, glia-associated disorder, etc. In various embodiments, the methods include detecting, in a sample of cells from the subject, the presence or absence of a genetic lesion characterized by at least one of an alteration affecting the integrity of a gene encoding a ORFX-protein, or the mis-expression of the ORFX gene. For example, such genetic lesions can be detected by ascertaining the existence of at least one of (1) a deletion of one or more nucleotides from a ORFX gene; (2) an addition of one or more nucleotides to a ORFX gene; (3) a substitution of one or more nucleotides of a ORFX gene, (4) a chromosomal rearrangement of a ORFX gene; (5) an alteration in the level of a messenger RNA transcript of a ORFX gene, (6) aberrant modification of a ORFX gene, such as of the methylation pattern of the genomic DNA, (7) the presence of a non-wild type splicing pattern of a messenger RNA transcript of a ORFX gene, (8) a non-wild type level of a ORFX-protein, (9) allelic loss of a ORFX gene, and (10) inappropriate post-translational modification of a ORFX-protein. As described herein, there are a large number of assay techniques known in the art which can be used for detecting lesions in a ORFX gene. A preferred biological sample is a peripheral blood leukocyte sample isolated by conventional means from a subject. However, any biological sample containing nucleated cells may be used, including, for example, buccal mucosal cells.


[0218] In certain embodiments, detection of the lesion involves the use of a probe/primer in a polymerase chain reaction (PCR) (see, e.g., U.S. Pat. Nos. 4,683,195 and 4,683,202), such as anchor PCR or RACE PCR, or, alternatively, in a ligation chain reaction (LCR) (see, e.g, Landegran et al. (1988) Science 241:1077-1080; and Nakazawa et al. (1994) PNAS 91:360-364), the latter of which can be particularly useful for detecting point mutations in the ORFX-gene (see Abravaya et al. (1995) Nucl Acids Res 23:675-682). This method can include the steps of collecting a sample of cells from a patient, isolating nucleic acid (e.g., genomic, mRNA or both) from the cells of the sample, contacting the nucleic acid sample with one or more primers that specifically hybridize to a ORFX gene under conditions such that hybridization and amplification of the ORFX gene (if present) occurs, and detecting the presence or absence of an amplification product, or detecting the size of the amplification product and comparing the length to a control sample. It is anticipated that PCR and/or LCR may be desirable to use as a preliminary amplification step in conjunction with any of the techniques used for detecting mutations described herein.


[0219] Alternative amplification methods include: self sustained sequence replication (Guatelli et al., 1990, Proc Natl Acad Sci USA 87:1874-1878),transcriptional amplification system (Kwoh, et al., 1989, Proc Natl Acad Sci USA 86:1173-1177), Q-Beta Replicase (Lizardi et al, 1988, BioTechnology 6:1197), or any other nucleic acid amplification method, followed by the detection of the amplified molecules using techniques well known to those of skill in the art. These detection schemes are especially useful for the detection of nucleic acid molecules if such molecules are present in very low numbers.


[0220] In an alternative embodiment, mutations in a ORFX gene from a sample cell can be identified by alterations in restriction enzyme cleavage patterns. For example, sample and control DNA is isolated, amplified (optionally), digested with one or more restriction endonucleases, and fragment length sizes are determined by gel electrophoresis and compared. Differences in fragment length sizes between sample and control DNA indicates mutations in the sample DNA. Moreover, the use of sequence specific ribozymes (see, for example, U.S. Pat. No. 5,493,531) can be used to score for the presence of specific mutations by development or loss of a ribozyme cleavage site.


[0221] In other embodiments, genetic mutations in ORFX can be identified by hybridizing a sample and control nucleic acids, e.g., DNA or RNA, to high density arrays containing hundreds or thousands of oligonucleotides probes (Cronin et al. (1996) Human Mutation 7: 244-255; Kozal et al. (1996) Nature Medicine 2: 753-759). For example, genetic mutations in ORFX can be identified in two dimensional arrays containing light-generated DNA probes as described in Cronin et al. above. Briefly, a first hybridization array of probes can be used to scan through long stretches of DNA in a sample and control to identify base changes between the sequences by making linear arrays of sequential overlapping probes. This step allows the identification of point mutations. This step is followed by a second hybridization array that allows the characterization of specific mutations by using smaller, specialized probe arrays complementary to all variants or mutations detected. Each mutation array is composed of parallel probe sets, one complementary to the wild-type gene and the other complementary to the mutant gene.


[0222] In yet another embodiment, any of a variety of sequencing reactions known in the art can be used to directly sequence the ORFX gene and detect mutations by comparing the sequence of the sample ORFX with the corresponding wild-type (control) sequence. Examples of sequencing reactions include those based on techniques developed by Maxim and Gilbert (1977) PNAS 74:560 or Sanger (1977) PNAS 74:5463. It is also contemplated that any of a variety of automated sequencing procedures can be utilized when performing the diagnostic assays (Naeve et al., (1995) Biotechniques 19:448), including sequencing by mass spectrometry (see, e.g., PCT International Publ. No. WO 94/16101; Cohen et al. (1996) Adv Chromatogr 36:127-162; and Griffin et al. (1993) Appl Biochem Biotechnol 38:147-159).


[0223] Other methods for detecting mutations in the ORFX gene include methods in which protection from cleavage agents is used to detect mismatched bases in RNA/RNA or RNA/DNA heteroduplexes (Myers et al. (1985) Science 230:1242). In general, the art technique of “mismatch cleavage” starts by providing heteroduplexes of formed by hybridizing (labeled) RNA or DNA containing the wild-type ORFX sequence with potentially mutant RNA or DNA obtained from a tissue sample. The double-stranded duplexes are treated with an agent that cleaves single-stranded regions of the duplex such as which will exist due to basepair mismatches between the control and sample strands. For instance, RNA/DNA duplexes can be treated with RNase and DNA/DNA hybrids treated with SI nuclease to enzymatically digesting the mismatched regions. In other embodiments, either DNA/DNA or RNA/DNA duplexes can be treated with hydroxylamine or osmium tetroxide and with piperidine in order to digest mismatched regions. After digestion of the mismatched regions, the resulting material is then separated by size on denaturing polyacrylamide gels to determine the site of mutation. See, for example, Cotton et al (1988) Proc Natl Acad Sci USA 85:4397; Saleeba et al (1992) Methods Enzymol 217:286-295. In an embodiment, the control DNA or RNA can be labeled for detection.


[0224] In still another embodiment, the mismatch cleavage reaction employs one or more proteins that recognize mismatched base pairs in double-stranded DNA (so called “DNA mismatch repair” enzymes) in defined systems for detecting and mapping point mutations in ORFX cDNAs obtained from samples of cells. For example, the mutY enzyme of E. coli cleaves A at G/A mismatches and the thymidine DNA glycosylase from HeLa cells cleaves T at G/F mismatches (Hsu et al. (1994) Carcinogenesis 15:1657-1662). According to an exemplary embodiment, a probe based on a ORFX sequence, e.g., a wild-type ORFX sequence, is hybridized to a cDNA or other DNA product from a test cell(s). The duplex is treated with a DNA mismatch repair enzyme, and the cleavage products, if any, can be detected from electrophoresis protocols or the like. See, for example, U.S. Pat. No. 5,459,039.


[0225] In other embodiments, alterations in electrophoretic mobility will be used to identify mutations in ORFX genes. For example, single strand conformation polymorphism (SSCP) may be used to detect differences in electrophoretic mobility between mutant and wild type nucleic acids (Orita et al. (1989) Proc Natl Acad Sci USA: 86:2766, see also Cotton (1993) Mutat Res 285:125-144; Hayashi (1992) Genet Anal Tech Appl 9:73-79). Single-stranded DNA fragments of sample and control ORFX nucleic acids will be denatured and allowed to renature. The secondary structure of single-stranded nucleic acids varies according to sequence, the resulting alteration in electrophoretic mobility enables the detection of even a single base change. The DNA fragments may be labeled or detected with labeled probes. The sensitivity of the assay may be enhanced by using RNA, rather than DNA, in which the secondary structure is more sensitive to a change in sequence. In one embodiment, the subject method utilizes heteroduplex analysis to separate double stranded heteroduplex molecules on the basis of changes in electrophoretic mobility. See, e.g., Keen et al. (1991) Trends Genet 7:5.


[0226] In yet another embodiment the movement of mutant or wild-type fragments in polyacrylamide gels containing a gradient of denaturant is assayed using denaturing gradient gel electrophoresis (DGGE). See, e.g., Myers et al (1985) Nature 313:495. When DGGE is used as the method of analysis, DNA will be modified to insure that it does not completely denature, for example by adding a GC clamp of approximately 40 bp of high-melting GC-rich DNA by PCR. In a further embodiment, a temperature gradient is used in place of a denaturing gradient to identify differences in the mobility of control and sample DNA. See, e.g., Rosenbaum and Reissner (1987) Biophys Chem 265:12753.


[0227] Examples of other techniques for detecting point mutations include, but are not limited to, selective oligonucleotide hybridization, selective amplification, or. selective primer extension. For example, oligonucleotide primers may be prepared in which the known mutation is placed centrally and then hybridized to target DNA under conditions that permit hybridization only if a perfect match is found. See, e.g., Saiki et al. (1986) Nature 324:163); Saiki et al. (1989) Proc Natl Acad Sci USA 86:6230. Such allele specific oligonucleotides are hybridized to PCR amplified target DNA or a number of different mutations when the oligonucleotides are attached to the hybridizing membrane and hybridized with labeled target DNA.


[0228] Alternatively, allele specific amplification technology that depends on selective PCR amplification may be used in conjunction with the instant invention. Oligonucleotides used as primers for specific amplification may carry the mutation of interest in the center of the molecule (so that amplification depends on differential hybridization) (Gibbs et al. (1989) Nucleic Acids Res 17:2437-2448) or at the extreme 3′ end of one primer where, under appropriate conditions, mismatch can prevent, or reduce polymerase extension (Prossner (1993) Tibtech 11:238). In addition it may be desirable to introduce a novel restriction site in the region of the mutation to create cleavage-based detection. See, e.g., Gasparini et al (1992) Mol Cell Probes 6:1. It is anticipated that in certain embodiments amplification may also be performed using Taq ligase for amplification. See, e.g., Barany (1991) Proc Natl Acad Sci USA 88:189. In such cases, ligation will occur only if there is a perfect match at the 3′ end of the 5′ sequence, making it possible to detect the presence of a known mutation at a specific site by looking for the presence or absence of amplification.


[0229] The methods described herein may be performed, for example, by utilizing pre-packaged diagnostic kits comprising at least one probe nucleic acid or antibody reagent described herein, which may be conveniently used, e.g., in clinical settings to diagnose patients exhibiting symptoms or family history of a disease or illness involving a ORFX gene.


[0230] Furthermore, any cell type or tissue, preferably peripheral blood leukocytes, in which ORFX is expressed may be utilized in the prognostic assays described herein. However, any biological sample containing nucleated cells may be used, including, for example, buccal mucosal cells.


[0231] Pharmacogenomics


[0232] Agents, or modulators that have a stimulatory or inhibitory effect on ORFX activity (e.g., ORFX gene expression), as identified by a screening assay described herein can be administered to individuals to treat (prophylactically or therapeutically) disorders (e.g., neurological, cancer-related or gestational disorders) associated with aberrant ORFX activity. In conjunction with such treatment, the pharmacogenomics (i.e., the study of the relationship between an individual's genotype and that individual's response to a foreign compound or drug) of the individual may be considered. Differences in metabolism of therapeutics can lead to severe toxicity or therapeutic failure by altering the relation between dose and blood concentration of the pharmacologically active drug. Thus, the pharmacogenomics of the individual permits the selection of effective agents (e.g., drugs) for prophylactic or therapeutic treatments based on a consideration of the individual's genotype. Such pharmacogenomics can further be used to determine appropriate dosages and therapeutic regimens. Accordingly, the activity of ORFX protein, expression of ORFX nucleic acid, or mutation content of ORFX genes in an individual can be determined to thereby select appropriate agent(s) for therapeutic or prophylactic treatment of the individual.


[0233] Pharmacogenomics deals with clinically significant hereditary variations in the response to drugs due to altered drug disposition and abnormal action in affected persons. See e.g., Eichelbaum, 1996, Clin Exp Pharmacol Physiol, 23:983-985 and Linder, 1997, Clin Chem, 43:254-266. In general, two types of pharmacogenetic conditions can be differentiated. Genetic conditions transmitted as a single factor altering the way drugs act on the body (altered drug action) or genetic conditions transmitted as single factors altering the way the body acts on drugs (altered drug metabolism). These pharmacogenetic conditions can occur either as rare defects or as polymorphisms. For example, glucose-6-phosphate dehydrogenase (G6PD) deficiency is a common inherited enzymopathy in which the main clinical complication is haemolysis after ingestion of oxidant drugs (anti-malarials, sulfonamides, analgesics, nitrofurans) and consumption of fava beans.


[0234] As an illustrative embodiment, the activity of drug metabolizing enzymes is a major determinant of both the intensity and duration of drug action. The discovery of genetic polymorphisms of drug metabolizing enzymes (e.g., N-acetyltransferase 2 (NAT 2) and cytochrome P450 enzymes CYP2D6 and CYP2C19) has provided an explanation as to why some patients do not obtain the expected drug effects or show exaggerated drug response and serious toxicity after taking the standard and safe dose of a drug. These polymorphisms are expressed in two phenotypes in the population, the extensive metabolizer (EM) and poor metabolizer (PM). The prevalence of PM is different among different populations. For example, the gene coding for CYP2D6 is highly polymorphic and several mutations have been identified in PM, which all lead to the absence of functional CYP2D6. Poor metabolizers of CYP2D6 and CYP2C19 quite frequently experience exaggerated drug response and side effects when they receive standard doses. If a metabolite is the active therapeutic moiety, PM show no therapeutic response, as demonstrated for the analgesic effect of codeine mediated by its CYP2D6-formed metabolite morphine. The other extreme are the so called ultra-rapid metabolizers who do not respond to standard doses. Recently, the molecular basis of ultra-rapid metabolism has been identified to be due to CYP2D6 gene amplification.


[0235] Thus, the activity of ORFX protein, expression of ORFX nucleic acid, or mutation content of ORFX genes in an individual can be determined to thereby select appropriate agent(s) for therapeutic or prophylactic treatment of the individual. In addition, pharmacogenetic studies can be used to apply genotyping of polymorphic alleles encoding drug-metabolizing enzymes to the identification of an individual's drug responsiveness phenotype. This knowledge, when applied to dosing or drug selection, can avoid adverse reactions or therapeutic failure and thus enhance therapeutic or prophylactic efficiency when treating a subject with a ORFX modulator, such as a modulator identified by one of the exemplary screening assays described herein.


[0236] Monitoring Clinical Efficacy


[0237] Monitoring the influence of agents (e.g., drugs, compounds) on the expression or activity of ORFX (e.g., the ability to modulate aberrant cell proliferation and/or differentiation) can be applied in basic drug screening and in clinical trials. For example, the effectiveness of an agent determined by a screening assay as described herein to increase ORFX gene expression, protein levels, or upregulate ORFX activity, can be monitored in clinical trials of subjects exhibiting decreased ORFX gene expression, protein levels, or downregulated ORFX activity. Alternatively, the effectiveness of an agent determined by a screening assay to decrease ORFX gene expression, protein levels, or downregulate ORFX activity, can be monitored in clinical trials of subjects exhibiting increased ORFX gene expression, protein levels, or upregulated ORFX activity. In such clinical trials, the expression or activity of ORFX and, preferably, other genes that have been implicated in, for example, a proliferative or neurological disorder, can be used as a “read out” or marker of the responsiveness of a particular cell.


[0238] For example, genes, including ORFX, that are modulated in cells by treatment with an agent (e.g., compound, drug or small molecule) that modulates ORFX activity (e.g., identified in a screening assay as described herein) can be identified. Thus, to study the effect of agents on cellular proliferation disorders, for example, in a clinical trial, cells can be isolated and RNA prepared and analyzed for the levels of expression of ORFX and other genes implicated in the disorder. The levels of gene expression (i.e., a gene expression pattern) can be quantified by Northern blot analysis or RT-PCR, as described herein, or alternatively by measuring the amount of protein produced, by one of the methods as described herein, or by measuring the levels of activity of ORFX or other genes. In this way, the gene expression pattern can serve as a marker, indicative of the physiological response of the cells to the agent. Accordingly, this response state may be determined before, and at various points during, treatment of the individual with the agent.


[0239] In one embodiment, the invention provides a method for monitoring the effectiveness of treatment of a subject with an agent (e.g., an agonist, antagonist, protein, peptide, nucleic acid, peptidomimetic, small molecule, or other drug candidate identified by the screening assays described herein) comprising the steps of (i) obtaining a pre-administration sample from a subject prior to administration of the agent; (ii) detecting the level of expression of a ORFX protein, mRNA, or genomic DNA in the preadministration sample; (iii) obtaining one or more post-administration samples from the subject; (iv) detecting the level of expression or activity of the ORFX protein, mRNA, or genomic DNA in the post-administration samples; (v) comparing the level of expression or activity of the ORFX protein, mRNA, or genomic DNA in the pre-administration sample with the ORFX protein, mRNA, or genomic DNA in the post administration sample or samples; and (vi) altering the administration of the agent to the subject accordingly. For example, increased administration of the agent may be desirable to increase the expression or activity of ORFX to higher levels than detected, i.e., to increase the effectiveness of the agent. Alternatively, decreased administration of the agent may be desirable to decrease expression or activity of ORFX to lower levels than detected, i.e., to decrease the effectiveness of the agent.


[0240] Methods of Treatment


[0241] The present invention provides for both prophylactic and therapeutic methods of treating a subject at risk of (or susceptible to) a disorder or having a disorder associated with aberrant ORFX expression or activity.


[0242] Diseases and disorders that are characterized by increased (relative to a subject not suffering from the disease or disorder) levels or biological activity may be treated with Therapeutics that antagonize (i.e., reduce or inhibit) activity. Therapeutics that antagonize activity may be administered in a therapeutic or prophylactic manner. Therapeutics that may be utilized include, but are not limited to, (i) a ORFX polypeptide, or analogs, derivatives, fragments or homologs thereof; (it) antibodies to a ORFX peptide; (iii) nucleic acids encoding a ORFX peptide; (iv) administration of antisense nucleic acid and nucleic acids that are “dysfunctional” (i.e., due to a heterologous insertion within the coding sequences of coding sequences to a ORFX peptide) that are utilized to “knockout” endogenous function of a ORFX peptide by homologous recombination (see, e.g., Capecchi, 1989, Science 244: 1288-1292); or (v) modulators (i.e., inhibitors, agonists and antagonists, including additional peptide mimetic of the invention or antibodies specific to a peptide of the invention) that alter the interaction between a ORFX peptide and its binding partner.


[0243] Diseases and disorders that are characterized by decreased (relative to a subject not suffering from the disease or disorder) levels or biological activity may be treated with Therapeutics that increase (i.e., are agonists to) activity. Therapeutics that upregulate activity may be administered in a therapeutic or prophylactic manner. Therapeutics that may be utilized include, but are not limited to, a ORFX peptide, or analogs, derivatives, fragments or homologs thereof; or an agonist that increases bioavailability.


[0244] Increased or decreased levels can be readily detected by quantifying peptide and/or RNA, by obtaining a patient tissue sample (e.g., from biopsy tissue) and assaying it in vitro for RNA or peptide levels, structure and/or activity of the expressed peptides (or mRNAs of a ORFX peptide). Methods that are well-known within the art include, but are not limited to, immunoassays (e.g., by Western blot analysis, immunoprecipitation followed by sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis, immunocytochemistry, etc.) and/or hybridization assays to detect expression of mRNAs (e.g., Northern assays, dot blots, in situ hybridization, etc.).


[0245] In one aspect, the invention provides a method for preventing, in a subject, a disease or condition associated with an aberrant ORFX expression or activity, by administering to the subject an agent that modulates ORFX expression or at least one ORFX activity. Subjects at risk for a disease that is caused or contributed to by aberrant ORFX expression or activity can be identified by, for example, any or a combination of diagnostic or prognostic assays as described herein. Administration of a prophylactic agent can occur prior to the manifestation of symptoms characteristic of the ORFX aberrancy, such that a disease or disorder is prevented or, alternatively, delayed in its progression. Depending on the type of ORFX aberrancy, for example, a ORFX agonist or ORFX antagonist agent can be used for treating the subject. The appropriate agent can be determined based on screening assays described herein.


[0246] Another aspect of the invention pertains to methods of modulating ORFX expression or activity for therapeutic purposes. The modulatory method of the invention involves contacting a cell with an agent that modulates one or more of the activities of ORFX protein activity associated with the cell. An agent that modulates ORFX protein activity can be an agent as described herein, such as a nucleic acid or a protein, a naturally-occurring cognate ligand of a ORFX protein, a peptide, a ORFX peptidomimetic, or other small molecule. In one embodiment, the agent stimulates one or more ORFX protein activity. Examples of such stimulatory agents include active ORFX protein and a nucleic acid molecule encoding ORFX that has been introduced into the cell. In another embodiment, the agent inhibits one or more ORFX protein activity. Examples of such inhibitory agents include antisense ORFX nucleic acid molecules and anti-ORFX antibodies. These modulatory methods can be performed in vitro (e.g., by culturing the cell with the agent) or, alternatively, in vivo (e.g., by administering the agent to a subject). As such, the present invention provides methods of treating an individual afflicted with a disease or disorder characterized by aberrant expression or activity of a ORFX protein or nucleic acid molecule. In one embodiment, the method involves administering an agent (e.g., an agent identified by a screening assay described herein), or combination of agents that modulates (e.g., upregulates or downregulates) ORFX expression or activity. In another embodiment, the method involves administering a ORFX protein or nucleic acid molecule as therapy to compensate for reduced or aberrant ORFX expression or activity.


[0247] Determination of the Biological Effect of a Therapeutic


[0248] In various embodiments of the present invention, suitable in vitro or in vivo assays are utilized to determine the effect of a specific Therapeutic and whether its administration is indicated for treatment of the affected tissue.


[0249] In various specific embodiments, in vitro assays may be performed with representative cells of the type(s) involved in the patient's disorder, to determine if a given Therapeutic exerts the desired effect upon the cell type(s). Compounds for use in therapy may be tested in suitable animal model systems including, but not limited to rats, mice, chicken, cows, monkeys, rabbits, and the like, prior to testing in human subjects. Similarly, for in vivo testing, any of the animal model system known in the art may be used prior to administration to human subjects.


[0250] Malignancies


[0251] Some ORFX polypeptides are expressed in cancerous cells (see, e.g., Tables 1 and 2). Accordingly, the corresponding ORF protein is involved in the regulation of cell proliferation. Accordingly, Therapeutics of the present invention may be useful in the therapeutic or prophylactic treatment of diseases or disorders that are associated with cell hyperproliferation and/or loss of control of cell proliferation (e.g., cancers, malignancies and tumors). For a review of such hyperproliferation disorders, see e.g., Fishman, et al., 1985. Medicine 2nd ed., J. B. Lippincott Co., Philadelphia, Pa.


[0252] Therapeutics of the present invention may be assayed by any method known within the art for efficacy in treating or preventing malignancies and related disorders. Such assays include, but are not limited to, in vitro assays utilizing transformed cells or cells derived from the patient's tumor, as well as in vivo assays using animal models of cancer or malignancies. Potentially effective Therapeutics are those that, for example, inhibit the proliferation of tumor-derived or transformed cells in culture or cause a regression of tumors in animal models, in comparison to the controls.


[0253] In the practice of the present invention, once a malignancy or cancer has been shown to be amenable to treatment by modulating (i.e., inhibiting, antagonizing or agonizing) activity, that cancer or malignancy may subsequently be treated or prevented by the administration of a Therapeutic that serves to modulate protein function.


[0254] Premalignant Conditions


[0255] The Therapeutics of the present invention that are effective in the therapeutic or prophylactic treatment of cancer or malignancies may also be administered for the treatment of pre-malignant conditions and/or to prevent the progression of a pre-malignancy to a neoplastic or malignant state. Such prophylactic or therapeutic use is indicated in conditions known or suspected of preceding progression to neoplasia or cancer, in particular, where non-neoplastic cell growth consisting of hyperplasia, metaplasia or, most particularly, dysplasia has occurred. For a review of such abnormal cell growth see e.g., Robbins & Angell, 1976. Basic Pathology, 2nd ed., W. B. Saunders Co., Philadelphia, Pa.


[0256] Hyperplasia is a form of controlled cell proliferation involving an increase in cell number in a tissue or organ, without significant alteration in its structure or function. For example, it has been demonstrated that endometrial hyperplasia often precedes endometrial cancer. Metaplasia is a form of controlled cell growth in which one type of mature or fully differentiated cell substitutes for another type of mature cell. Metaplasia may occur in epithelial or connective tissue cells. Dysplasia is generally considered a precursor of cancer, and is found mainly in the epithelia. Dysplasia is the most disorderly form of non-neoplastic cell growth, and involves a loss in individual cell uniformity and in the architectural orientation of cells. Dysplasia characteristically occurs where there exists chronic irritation or inflammation, and is often found in the cervix, respiratory passages, oral cavity, and gall bladder.


[0257] Alternatively, or in addition to the presence of abnormal cell growth characterized as hyperplasia, metaplasia, or dysplasia, the presence of one or more characteristics of a transformed or malignant phenotype displayed either in vivo or in vitro within a cell sample derived from a patient, is indicative of the desirability of prophylactic/therapeutic administration of a Therapeutic that possesses the ability to modulate activity of An aforementioned protein. Characteristics of a transformed phenotype include, but are not limited to: (i) morphological changes; (ii) looser substratum attachment; (iii) loss of cell-to-cell contact inhibition; (iv) loss of anchorage dependence; (v) protease release; (vi) increased sugar transport; (vii) decreased serum requirement; (viii) expression of fetal antigens, (ix) disappearance of the 250 kDal cell-surface protein, and the like. See e.g., Richards, et al., 1986. Molecular Pathology, W. B. Saunders Co., Philadelphia, Pa.


[0258] In a specific embodiment of the present invention, a patient that exhibits one or more of the following predisposing factors for malignancy is treated by administration of an effective amount of a Therapeutic: (i) a chromosomal translocation associated with a malignancy (e.g., the Philadelphia chromosome (bcr/abl) for chronic myelogenous leukemia and t(14;18) for follicular lymphoma, etc.); (ii) familial polyposis or Gardner's syndrome (possible forerunners of colon cancer); (iii) monoclonal gammopathy of undetermined significance (a possible precursor of multiple myeloma) and (iv) a first degree kinship with persons having a cancer or pre-cancerous disease showing a Mendelian (genetic) inheritance pattern (e.g., familial polyposis of the colon, Gardner's syndrome, hereditary exostosis, polyendocrine adenomatosis, Peutz-Jeghers syndrome, neurofibromatosis of Von Recklinghausen, medullary thyroid carcinoma with amyloid production and pheochromocytoma, retinoblastoma, carotid body tumor, cutaneous melanocarcinoma, intraocular melanocarcinoma, xeroderma pigmentosum, ataxia telangiectasia, Chediak-Higashi syndrome, albinism, Fanconi's aplastic anemia and Bloom's syndrome).


[0259] In another embodiment, a Therapeutic of the present invention is administered to a human patient to prevent the progression to breast, colon, lung, pancreatic, or uterine cancer, or melanoma or sarcoma.


[0260] Hyperproliferative and Dysproliferative Disorders


[0261] In one embodiment of the present invention, a Therapeutic is administered in the therapeutic or prophylactic treatment of hyperproliferative or benign dysproliferative disorders. The efficacy in treating or preventing hyperproliferative diseases or disorders of a Therapeutic of the present invention may be assayed by any method known within the art. Such assays include in vitro cell proliferation assays, in vitro or in vivo assays using animal models of hyperproliferative diseases or disorders, or the like. Potentially effective Therapeutics may, for example, promote cell proliferation in culture or cause growth or cell proliferation in animal models in comparison to controls.


[0262] Specific embodiments of the present invention are directed to the treatment or prevention of cirrhosis of the liver (a condition in which scarring has overtaken normal liver regeneration processes); treatment of keloid (hypertrophic scar) formation causing disfiguring of the skin in which the scarring process interferes with normal renewal; psoriasis (a common skin condition characterized by excessive proliferation of the skin and delay in proper cell fate determination); benign tumors; fibrocystic conditions and tissue hypertrophy (e.g., benign prostatic hypertrophy).


[0263] Neurodegenerative Disorders


[0264] Some ORFX proteins are found in cell types have been implicated in the deregulation of cellular maturation and apoptosis, which are both characteristic of neurodegenerative disease. Accordingly, Therapeutics of the invention, particularly but not limited to those that modulate (or supply) activity of an aforementioned protein, may be effective in treating or preventing neurodegenerative disease. Therapeutics of the present invention that modulate the activity of an aforementioned protein involved in neurodegenerative disorders can be assayed by any method known in the art for efficacy in treating or preventing such neurodegenerative diseases and disorders. Such assays include in vitro assays for regulated cell maturation or inhibition of apoptosis or in vivo assays using animal models of neurodegenerative diseases or disorders, or any of the assays described below. Potentially effective Therapeutics, for example but not by way of limitation, promote regulated cell maturation and prevent cell apoptosis in culture, or reduce neurodegeneration in animal models in comparison to controls.


[0265] Once a neurodegenerative disease or disorder has been shown to be amenable to treatment by modulation activity, that neurodegenerative disease or disorder can be treated or prevented by administration of a Therapeutic that modulates activity. Such diseases include all degenerative disorders involved with aging, especially osteoarthritis and neurodegenerative disorders.


[0266] Disorders Related to Organ Transplantation


[0267] Some ORFX can be associated with disorders related to organ transplantation, in particular but not limited to organ rejection. Therapeutics of the invention, particularly those that modulate (or supply) activity, may be effective in treating or preventing diseases or disorders related to organ transplantation. Therapeutics of the invention (particularly Therapeutics that modulate the levels or activity of an aforementioned protein) can be assayed by any method known in the art for efficacy in treating or preventing such diseases and disorders related to organ transplantation. Such assays include in vitro assays for using cell culture models as described below, or in vivo assays using animal models of diseases and disorders related to organ transplantation, see e.g., below. Potentially effective Therapeutics, for example but not by way of limitation, reduce immune rejection responses in animal models in comparison to controls.


[0268] Accordingly, once diseases and disorders related to organ transplantation are shown to be amenable to treatment by modulation of activity, such diseases or disorders can be treated or prevented by administration of a Therapeutic that modulates activity.


[0269] Cardiovascular Disease


[0270] GENX has been implicated in cardiovascular disorders, including in atherosclerotic plaque formation. Diseases such as cardiovascular disease, including cerebral thrombosis or hemorrhage, ischemic heart or renal disease, peripheral vascular disease, or thrombosis of other major vessel, and other diseases, including diabetes mellitus, hypertension, hypothyroidism, cholesterol ester storage disease, systemic lupus erythematosus, homocysteinemia, and familial protein or lipid processing diseases, and the like, are either directly or indirectly associated with atherosclerosis. Accordingly, Therapeutics of the invention, particularly those that modulate (or supply) activity or formation may be effective in treating or preventing atherosclerosis-associated diseases or disorders. Therapeutics of the invention (particularly Therapeutics that modulate the levels or activity) can be assayed by any method known in the art, including those described below, for efficacy in treating or preventing such diseases and disorders.


[0271] A vast array of animal and cell culture models exist for processes involved in atherosclerosis. A limited and non-exclusive list of animal models includes knockout mice for premature atherosclerosis (Kurabayashi and Yazaki, 1996, Int. Angiol. 15: 187-194), transgenic mouse models of atherosclerosis (Kappel et al., 1994, FASEB J. 8: 583-592), antisense oligonucleotide treatment of animal models (Callow, 1995, Curr. Opin. Cardiol. 10: 569-576), transgenic rabbit models for atherosclerosis (Taylor, 1997, Ann. N.Y. Acad. Sci 811: 146-152), hypercholesterolemic animal models (Rosenfeld, 1996, Diabetes Res. Clin. Pract. 30 Suppl.: 1-11), hyperlipidemic mice (Paigen et al., 1994, Curr. Opin. Lipidol. 5: 258-264), and inhibition of lipoxygenase in animals (Sigal et al., 1994, Ann. N.Y. Acad. Sci. 714: 211-224). In addition, in vitro cell models include but are not limited to monocytes exposed to low density lipoprotein (Frostegard et al., 1996, Atherosclerosis 121: 93-103), cloned vascular smooth muscle cells (Suttles et al., 1995, Exp. Cell Res. 218: 331-338), endothelial cell-derived chemoattractant exposed T cells (Katz et al., 1994, J. Leukoc. Biol. 55: 567-573), cultured human aortic endothelial cells (Farber et al., 1992, Am. J. Physiol. 262: H1088-1085), and foam cell cultures (Libby et al., 1996, Curr Opin Lipidol 7: 330-335). Potentially effective Therapeutics, for example but not by way of limitation, reduce foam cell formation in cell culture models, or reduce atherosclerotic plaque formation in hypercholesterolemic mouse models of atherosclerosis in comparison to controls.


[0272] Accordingly, once an atherosclerosis-associated disease or disorder has been shown to be amenable to treatment by modulation of activity or formation, that disease or disorder can be treated or prevented by administration of a Therapeutic that modulates activity.


[0273] Cytokine and Cell Proliferation/Differentiation Activity


[0274] A GENX protein of the present invention may exhibit cytokine, cell proliferation (either inducing or inhibiting) or cell differentiation (either inducing or inhibiting) activity or may induce production of other cytokines in certain cell populations. Many protein factors discovered to date, including all known cytokines, have exhibited activity in one or more factor dependent cell proliferation assays, and hence the assays serve as a convenient confirmation of cytokine activity. The activity of a protein of the present invention is evidenced by any one of a number of routine factor dependent cell proliferation assays for cell lines including, without limitation, 32D, DA2, DA1G, T10, B9, B9/11, BaF3, MC9/G, M+(preB M+), 2E8, RB5, DA1, 123, T1165, HT2, CTLL2, TF-1, Mo7e and CMK.


[0275] The activity of a protein of the invention may, among other means, be measured by the following methods: Assays for T-cell or thymocyte proliferation include without limitation those described in: Current Protocols in Immunology, Ed by Coligan et al., Greene Publishing Associates and Wiley-Interscience (Chapter 3 and Chapter 7); Takai et al, J Immunol 137:3494-3500, 1986; Bertagnoili et al., J Immunol 145:1706-1712, 1990; Bertagnolli et al., Cell Immunol 133:327-341, 1991; Bertagnolli, et al., J Immunol 149:3778-3783, 1992; Bowman et al., J Immunol 152:1756-1761, 1994.


[0276] Assays for cytokine production and/or proliferation of spleen cells, lymph node cells or thymocytes include, without limitation,those described by Kruisbeek and Shevach, In: Current Protocols in Immunology. Coligan et al., eds. Vol 1, pp. 3.12.1-14, John Wiley and Sons, Toronto 1994; and by Schreiber, In: Current Protocols in Immunology. Coligan eds. Vol 1 pp. 6.8.1-8, John Wiley and Sons, Toronto 1994.


[0277] Assays for proliferation and differentiation of hematopoietic and lymphopoietic cells include, without limitation, those described by Bottomly et al., In: Current Protocols in Immunology. Coligan et al., eds. Vol 1 pp. 6.3.1-6.3.12, John Wiley and Sons, Toronto 1991; deVries et al., J Exp Med 173:1205-1211, 1991; Moreau et al., Nature 336:690-692, 1988; Greenberger et al., Proc Natl Acad Sci U.S.A. 80:2931-2938, 1983; Nordan, In: Current Protocols in Immunology. Coligan et al., eds. Vol 1 pp. 6.6.1-5, John Wiley and Sons, Toronto 1991; Smith et al., Proc Natl Acad Sci U.S.A. 83:1857-1861, 1986; Measurement of human Interleukin 11-Bennett, et al. In: Current Protocols in Immunology. Coligan et al., eds. Vol 1 pp. 6.15.1 John Wiley and Sons, Toronto 1991; Ciarletta, et al., In: Current Protocols in Immunology. Coligan et al., eds. Vol 1 pp. 6.13.1, John Wiley and Sons, Toronto 1991.


[0278] Assays for T-cell clone responses to antigens (which will identify, among others, proteins that affect APC-T cell interactions as well as direct T-cell effects by measuring proliferation and cytokine production) include, without limitation, those described In: Current Protocols in Immunology. Coligan et al., eds., Greene Publishing Associates and Wiley-Interscience (Chapter 3Chapter 6, Chapter 7); Weinberger et al., Proc Natl Acad Sci USA 77:6091-6095, 1980; Weinberger et al., Eur J Immun 11:405-411, 1981; Takai et al., J Immunol 137:3494-3500, 1986; Takai et al., J Immunol 140:508-512, 1988.


[0279] Immune Stimulating or Suppressing Activity


[0280] A GENX protein of the present invention may also exhibit immune stimulating or immune suppressing activity, including without limitation the activities for which assays are described herein. A protein may be useful in the treatment of various immune deficiencies and disorders (including severe combined immunodeficiency (SCID)), e.g., in regulating (up or down) growth and proliferation of T and/or B lymphocytes, as well as effecting the cytolytic activity of NK cells and other cell populations. These immune deficiencies may be genetic or be caused by vital (e.g., HIV) as well as bacterial or fungal infections, or may result from autoimmune disorders. More specifically, infectious diseases causes by vital, bacterial, fungal or other infection may be treatable using a protein of the present invention, including infections by HIV, hepatitis viruses, herpesviruses, mycobacteria, Leishmania species., malaria species. and various fungal infections such as candidiasis. Of course, in this regard, a protein of the present invention may also be useful where a boost to the immune system generally may be desirable, i.e., in the treatment of cancer.


[0281] Autoimmune disorders which may be treated using a protein of the present invention include, for example, connective tissue disease, multiple sclerosis, systemic lupus erythematosus, rheumatoid arthritis, autoimmune pulmonary inflammation, Guillain-Barre syndrome, autoimmune thyroiditis, insulin dependent diabetes mellitus, myasthenia gravis, graft-versus-host disease and autoimmune inflammatory eye disease. Such a protein of the present invention may also to be useful in the treatment of allergic reactions and conditions, such as asthma (particularly allergic asthma) or other respiratory problems. Other conditions, in which immune suppression is desired (including, for example, organ transplantation), may also be treatable using a protein of the present invention.


[0282] Using the proteins of the invention it may also be possible to immune responses, in a number of ways. Down regulation may be in the form of inhibiting or blocking an immune response already in progress or may involve preventing the induction of an immune response. The functions of activated T cells may be inhibited by suppressing T cell responses or by inducing specific tolerance in T cells, or both. Immunosuppression of T cell responses is generally an active, non-antigen-specific, process which requires continuous exposure of the T cells to the suppressive agent. Tolerance, which involves inducing non-responsiveness or energy in T cells, is distinguishable from immunosuppression in that it is generally antigen-specific and persists after exposure to the tolerizing agent has ceased. Operationally, tolerance can be demonstrated by the lack of a T cell response upon re-exposure to specific antigen in the absence of the tolerizing agent.


[0283] Down regulating or preventing one or more antigen functions (including without limitation B lymphocyte antigen functions (such as, for example, B7), e.g., preventing high level lymphokine synthesis by activated T cells, will be useful in situations of tissue, skin and organ transplantation and in graft-versus-host disease (GVHD). For example, blockage of T cell function should result in reduced tissue destruction in tissue transplantation. Typically, in tissue transplants, rejection of the transplant is initiated through its recognition as foreign by T cells, followed by an immune reaction that destroys the transplant. The administration of a molecule which inhibits or blocks interaction of a B7 lymphocyte antigen with its natural ligand(s) on immune cells (such as a soluble, monomeric form of a peptide having B7-2 activity alone or in conjunction with a monomeric form of a peptide having an activity of another B lymphocyte antigen (e.g., B7-1, B7-3) or blocking antibody), prior to transplantation can lead to the binding of the molecule to the natural ligand(s) on the immune cells without transmitting the corresponding costimulatory signal. Blocking B lymphocyte antigen function in this matter prevents cytokine synthesis by immune cells, such as T cells, and thus acts as an immunosuppressant. Moreover, the lack of costimulation may also be sufficient to energize the T cells, thereby inducing tolerance in a subject. Induction of long-term tolerance by B lymphocyte antigen-blocking reagents may avoid the necessity of repeated administration of these blocking reagents. To achieve sufficient immunosuppression or tolerance in a subject, it may also be necessary to block the function of B lymphocyte antigens.


[0284] The efficacy of particular blocking reagents in preventing organ transplant rejection or GVHD can be assessed using animal models that are predictive of efficacy in humans. Examples of appropriate systems which can be used include allogeneic cardiac grafts in rats and xenogeneic pancreatic islet cell grafts in mice, both of which have been used to examine the immunosuppressive effects of CTLA4Ig fusion proteins in vivo as described in Lenschow et al., Science 257:789-792 (1992) and Turka et al., Proc Natl Acad Sci USA, 89:11102-11105 (1992). In addition, murine models of GVHD (see Paul ed., Fundamental Immunology, Raven Press, New York, 1989, pp. 846-847) can be used to determine the effect of blocking B lymphocyte antigen function in vivo on the development of that disease.


[0285] Blocking antigen function may also be therapeutically useful for treating autoimmune diseases. Many autoimmune disorders are the result of inappropriate activation of T cells that are reactive against self tissue and which promote the production of cytokines and auto-antibodies involved in the pathology of the diseases. Preventing the activation of autoreactive T cells may reduce or eliminate disease symptoms. Administration of reagents which block costimulation of T cells by disrupting receptor:ligand interactions of B lymphocyte antigens can be used to inhibit T cell activation and prevent production of auto-antibodies or T cell-derived cytokines which may be involved in the disease process. Additionally, blocking reagents may induce antigen-specific tolerance of autoreactive T cells which could lead to long-term relief from the disease. The efficacy of blocking reagents in preventing or alleviating autoimmune disorders can be determined using a number of well-characterized animal models of human autoimmune diseases. Examples include murine experimental autoimmune encephalitis, systemic lupus erythematosis in MRL/lpr/lpr mice or NZB hybrid mice, murine autoimmune collagen arthritis, diabetes mellitus in NOD mice and BB rats, and murine experimental myasthenia gravis (see Paul ed., Fundamental Immunology Raven Press, New York, 1989, pp. 840-856).


[0286] Upregulation of an antigen function (preferably a B lymphocyte antigen function), as a means of up regulating immune responses, may also be useful in therapy. Upregulation of immune responses may be in the form of enhancing an existing immune response or eliciting an initial immune response. For example, enhancing an immune response through stimulating B lymphocyte antigen function may be useful in cases of viral infection. In addition, systemic vital diseases such as influenza, the common cold, and encephalitis might be alleviated by the administration of stimulatory forms of B lymphocyte antigens systemically.


[0287] Alternatively, anti-viral immune responses may be enhanced in an infected patient by removing T cells from the patient, costimulating the T cells in vitro with viral antigen-pulsed APCs either expressing a peptide of the present invention or together with a stimulatory form of a soluble peptide of the present invention and reintroducing the in vitro activated T cells into the patient. Another method of enhancing anti-vital immune responses would be to isolate infected cells from a patient, transfect them with a nucleic acid encoding a protein of the present invention as described herein such that the cells express all or a portion of the protein on their surface, and reintroduce the transfected cells into the patient. The infected cells would now be capable of delivering a costimulatory signal to, and thereby activate, T cells in vivo.


[0288] In another application, up regulation or enhancement of antigen function (preferably B lymphocyte antigen function) may be useful in the induction of tumor immunity. Tumor cells (e.g., sarcoma, melanoma, lymphoma, leukemia, neuroblastoma, carcinoma) transfected with a nucleic acid encoding at least one peptide of the present invention can be administered to a subject to overcome tumor-specific tolerance in the. subject. If desired, the tumor cell can be transfected to express a combination of peptides. For example, tumor cells obtained from a patient can be transfected ex vivo with an expression vector directing the expression of a peptide having B7-2-like activity alone, or in conjunction with a peptide having B7-1-like activity and/or B7-3-like activity. The transfected tumor cells are returned to the patient to result in expression of the peptides on the surface of the transfected cell. Alternatively, gene therapy techniques can be used to target a tumor cell for transfection in vivo.


[0289] The presence of the peptide of the present invention having the activity of a B lymphocyte antigen(s) on the surface of the tumor cell provides the necessary costimulation signal to T cells to induce a T cell mediated immune response against the transfected tumor cells. In addition, tumor cells which lack MHC class I or MHC class II molecules, or which fail to reexpress sufficient amounts of MHC class I or MHC class II molecules, can be transfected with nucleic acid encoding all or a portion of (e.g., a cytoplasmic-domain truncated portion) of an MHC class I α chain protein and β2 microglobulin protein or an MHC class II a chain protein and an MHC class II β chain protein to thereby express MHC class I or MHC class II proteins on the cell surface. Expression of the appropriate class I or class II MHC in conjunction with a peptide having the activity of a B lymphocyte antigen (e.g., B7-1, B7-2, B7-3) induces a T cell mediated immune response against the transfected tumor cell. Optionally, a gene encoding an antisense construct which blocks expression of an MHC class II associated protein, such as the invariant chain, can also be cotransfected with a DNA encoding a peptide having the activity of a B lymphocyte antigen to promote presentation of tumor associated antigens and induce tumor specific immunity. Thus, the induction of a T cell mediated immune response in a human subject may be sufficient to overcome tumor-specific tolerance in the subject.


[0290] The activity of a protein of the invention may, among other means, be measured by the following methods: Suitable assays for thymocyte or splenocyte cytotoxicity include, without limitation, those described In: Current Protocols in Immunology. Coligan et al., eds. Greene Publishing Associates and Wiley-Interscience (Chapter 3, Chapter 7); Herrmann et al., Proc Natl Acad Sci USA 78:2488-2492, 1981; Herrmann et al., J Immunol 128:1968-1974, 1982; Handa et al., J Immunol 135:1564-1572, 1985; Takai et al., J Immunol 137:3494-3500, 1986; Takai et al., J Immunol 140:508-512, 1988; Herrmann et al., Proc Natl Acad Sci USA 78:2488-2492, 1981; Herrmann et al., J Immunol 128:1968-1974, 1982; Handa et al., J Immunol 135:1564-1572, 1985; Takai et al., J Immunol 137:3494-3500, 1986; Bowman et al., J Virology 61:1992-1998; Takai et al, J Immunol 140:508-512, 1988; Bertagnolli et al., Cell Immunol 133:327-341, 1991; Brown et al., J Immunol 153:3079-3092, 1994.


[0291] Assays for T-cell-dependent immunoglobulin responses and isotype switching (which will identify, among others, proteins that modulate T-cell dependent antibody,responses and that affect Th1/Th2 profiles) include, without limitation, those described in: Maliszewski, J Immunol 144:3028-3033, 1990; and Mond and Brunswick In: Current Protocols in Immunology. Coligan et al., (eds.) Vol 1 pp. 3.8.1-3.8.16, John Wiley and Sons, Toronto 1994.


[0292] Mixed lymphocyte reaction (MLR) assays (which will identify, among others, proteins that generate predominantly Th1 and CTL responses) include, without limitation, those described In: Current Protocols in Immunology. Coligan et al., eds. Greene Publishing Associates and Wiley-Interscience (Chapter 3, Chapter 7); Takai et al., J Immunol 137:3494-3500, 1986; Takai et al., J Immunol 140:508-512, 1988; Bertagnolli et al., J Immunol 149:3778-3783, 1992.


[0293] Dendritic cell-dependent assays (which will identify, among others, proteins expressed by dendritic cells that activate naive T-cells) include, without limitation, those described in: Guery et al., J Immunol 134:536-544, 1995; Inaba et al, J Exp Med 173:549-559, 1991; Macatonia et al., J Immunol 154:5071-5079, 1995; Porgador et al, J Exp Med 182:255-260, 1995; Nair et al, J Virol 67:4062-4069, 1993; Huang et al., Science 264:961-965, 1994; Macatonia et al., J Exp Med 169:1255-1264, 1989; Bhardwaj et al, J Clin Investig 94:797-807, 1994; and Inaba et al., J Exp Med 172:631-640, 1990.


[0294] Assays for lymphocyte survival/apoptosis (which will identify, among others, proteins that prevent apoptosis after superantigen induction and proteins that regulate lymphocyte homeostasis) include, without limitation, those described in: Darzynkiewicz et al., Cytometry 13:795-808, 1992; Gorczyca et al., Leukemia 7:659-670, 1993; Gorczyca et al., Cancer Res 53:1945-1951, 1993; Itoh et al., Cell 66:233-243, 1991; Zacharchuk J Immunol 145:4037-4045, 1990; Zamai et al., Cytometry 14:891-897, 1993; Gorczyca et al., Internat J Oncol 1:639-648, 1992.


[0295] Assays for proteins that influence early steps of T-cell commitment and development include, without limitation, those described in: Antica et al, Blood 84:111-117, 1994; Fine et al., Cell Immunol 155: 111-122, 1994; Galy et al., Blood 85:2770-2778, 1995; Toki et al., Proc Nat Acad Sci USA 88:7548-7551, 1991.


[0296] Hematopoiesis Regulating Activity


[0297] A GENX protein of the present invention may be useful in regulation of hematopoiesis and, consequently, in the treatment of myeloid or lymphoid cell deficiencies. Even marginal biological activity in support of colony forming cells or of factor-dependent cell lines indicates involvement in regulating hematopoiesis, e.g. in supporting the growth and proliferation of erythroid progenitor cells alone or in combination with other cytokines, thereby indicating utility, for example, in treating various anemias or for use in conjunction with irradiation/chemotherapy to stimulate the production of erythroid precursors and/or erythroid cells; in supporting the growth and proliferation of myeloid cells such as granulocytes and monocytes/macrophages (i.e., traditional CSF activity) useful, for example, in conjunction with chemotherapy to prevent or treat consequent myelo-suppression; in supporting the growth and proliferation of megakaryocytes and consequently of platelets thereby allowing prevention or treatment of various platelet disorders such as thrombocytopenia, and generally for use in place of or complimentary to platelet transfusions; and/or in supporting the growth and proliferation of hematopoietic stem cells which are capable of maturing to any and all of the above-mentioned hematopoietic cells and therefore find therapeutic utility in various stem cell disorders (such as those usually treated with transplantation, including, without limitation, aplastic anemia and paroxysmal nocturnal hemoglobinuria), as well as in repopulating the stem cell compartment post irradiation/chemotherapy, either in-vivo or ex-vivo (i.e., in conjunction with bone marrow transplantation or with peripheral progenitor cell transplantation (homologous or heterologous)) as normal cells or genetically manipulated for gene therapy.


[0298] The activity of a protein of the invention may, among other means, be measured by the following methods:


[0299] Suitable assays for proliferation and differentiation of various hematopoietic lines are cited above.


[0300] Assays for embryonic stem cell differentiation (which will identify, among others, proteins that influence embryonic differentiation hematopoiesis) include, without limitation, those described in: Johansson et al. Cellular Biology 15:141-151, 1995; Keller et al., Mol. Cell. Biol. 13:473-486, 1993; McClanahan et al., Blood 81:2903-2915, 1993.


[0301] Assays for stem cell survival and differentiation (which will identify, among others, proteins that regulate lympho-hematopoiesis) include, without limitation, those described in: Methylcellulose colony forming assays, Freshney, In: Culture of Hematopoietic Cells. Freshney, et al. (eds.) Vol pp. 265-268, Wiley-Liss, Inc., New York, N.Y. 1994; Hirayama et al., Proc Natl Acad Sci USA 89:5907-5911, 1992; McNiece and Briddeli, In: Culture of Hematopoietic Cells. Freshney, et al. (eds.) Vol pp. 23-39, Wiley-Liss, Inc., New York, N.Y. 1994; Neben et al., Exp Hematol 22:353-359, 1994; Ploemacher, In: Culture of Hematopoietic Cells. Freshney, et al. eds. Vol pp. 1-21, Wiley-Liss, Inc., New York, N.Y. 1994; Spoonceret al., In: Culture of Hematopoietic Cells. Freshhey, et al., (eds.) Vol pp. 163-179, Wiley-Liss, Inc., New York, N.Y. 1994; Sutherland, In: Culture of Hematopoietic Cells. Freshney, et al., (eds.) Vol pp. 139-162, Wiley-Liss, Inc., New York, N.Y. 1994.


[0302] Tissue Growth Activity


[0303] A GENX protein of the present invention also may have utility in compositions used for bone, cartilage, tendon, ligament and/or nerve tissue growth or regeneration, as well as for wound healing and tissue repair and replacement, and in the treatment of burns, incisions and ulcers.


[0304] A protein of the present invention, which induces cartilage and/or bone growth in circumstances where bone is not normally formed, has application in the healing of bone fractures and cartilage damage or defects in humans and other animals. Such a preparation employing a protein of the invention may have prophylactic use in closed as well as open fracture reduction and also in the improved fixation of artificial joints. De novo bone formation induced by an osteogenic agent contributes to the repair of congenital, trauma induced, or oncologic resection induced craniofacial defects, and also is useful in cosmetic plastic surgery.


[0305] A protein of this invention may also be used in the treatment of periodontal disease, and in other tooth repair processes. Such agents may provide an environment to attract bone-forming cells, stimulate growth of bone-forming cells or induce differentiation of progenitors of bone-forming cells. A protein of the invention may also be useful in the treatment of osteoporosis or osteoarthritis, such as through stimulation of bone and/or cartilage repair or by blocking inflammation or processes of tissue destruction (collagenase activity, osteoclast activity, etc.) mediated by inflammatory processes.


[0306] Another category of tissue regeneration activity that may be attributable to the protein of the present invention is tendon/ligament formation. A protein of the present invention, which induces tendon/ligament-like tissue or other tissue formation in circumstances where such tissue is not normally formed, has application in the healing of tendon or ligament tears, deformities and other tendon or ligament defects in humans and other animals. Such a preparation employing a tendon/ligament-like tissue inducing protein may have prophylactic use in preventing damage to tendon or ligament tissue, as well as use in the improved fixation of tendon or ligament to bone or other tissues, and in repairing defects to tendon or ligament tissue. De novo tendon/ligament-like tissue formation induced by a composition of the present invention contributes to the repair of congenital, trauma induced, or other tendon or ligament defects of other origin, and is also useful in cosmetic plastic surgery for attachment or repair of tendons or ligaments. The compositions of the present invention may provide an environment to attract tendon- or ligament-forming cells, stimulate growth of tendon- or ligament-forming cells, induce differentiation of progenitors of tendon- or ligament-forming cells, or induce growth of tendon/ligament cells or progenitors ex vivo for return in vivo to effect tissue repair. The compositions of the invention may also be useful in the treatment of tendonitis, carpal tunnel syndrome and other tendon or ligament defects. The compositions may also include an appropriate matrix and/or sequestering agent as a career as is well known in the art.


[0307] The protein of the present invention may also be useful for proliferation of neural cells and for regeneration of nerve and brain tissue, i.e. for the treatment of central and peripheral nervous system diseases and neuropathies, as well as mechanical and traumatic disorders, which involve degeneration, death or trauma to neural cells or nerve tissue. More specifically, a protein may be used in the treatment of diseases of the peripheral nervous system, such as peripheral nerve injuries, peripheral neuropathy and localized neuropathies, and central nervous system diseases, such as Alzheimer's, Parkinson's disease, Huntington's disease, amyotrophic lateral sclerosis, and Shy-Drager syndrome. Further conditions which may be treated in accordance with the present invention include mechanical and traumatic disorders, such as spinal cord disorders, head trauma and cerebrovascular diseases such as stroke. Peripheral neuropathies resulting from chemotherapy or other medical therapies may also be treatable using a protein of the invention.


[0308] Proteins of the invention may also be useful to promote better or faster closure of non-healing wounds, including without limitation pressure ulcers, ulcers associated with vascular insufficiency, surgical and traumatic wounds, and the like.


[0309] It is expected that a protein of the present invention may also exhibit activity for generation or regeneration of other tissues, such as organs (including, for example, pancreas, liver, intestine, kidney, skin, endothelium), muscle (smooth, skeletal or cardiac) and vascular (including vascular endothelium) tissue, or for promoting the growth of cells comprising such tissues. Part of the desired effects may be by inhibition or modulation of fibrotic scarring to allow normal tissue to regenerate. A protein of the invention may also exhibit angiogenic activity.


[0310] A protein of the present invention may also be useful for gut protection or regeneration and treatment of lung or liver fibrosis, reperfusion injury in various tissues, and conditions resulting from systemic cytokine damage.


[0311] A protein of the present invention may also be useful for promoting or inhibiting differentiation of tissues described above from precursor tissues or cells; or for inhibiting the growth of tissues described above.


[0312] The activity of a protein of the invention may, among other means, be measured by the following methods:


[0313] Assays for tissue generation activity include, without limitation, those described in: International Patent Publication No. WO95/16035 (bone, cartilage, tendon); International Patent Publication No. WO95/05846 (nerve, neuronal); International Patent Publication No. WO91/07491 (skin, endothelium).


[0314] Assays for wound healing activity include, without limitation, those described in: Winter, Epidermal Wound Healing, pp. 71-112 (Maibach and Rovee, eds.), Year Book Medical Publishers, Inc., Chicago, as modified by Eaglstein and Menz, J Invest. Dermatol 71:382-84 (1978).


[0315] Activin/Inhibin Activity


[0316] A GENX protein of the present invention may also exhibit activin- or inhibin-related activities. Inhibins are characterized by their ability to inhibit the release of follicle stimulating hormone (FSH), while activins and are characterized by their ability to stimulate the release of follicle stimulating hormone (FSH). Thus, a protein of the present invention, alone or in heterodimers with a member of the inhibin a family, may be useful as a contraceptive based on the ability of inhibins to decrease fertility in female mammals and decrease spermatogenesis in male mammals. Administration of sufficient amounts of other inhibins can induce infertility in these mammals. Alternatively, the protein of the invention, as a homodimer or as a heterodimer with other protein subunits of the inhibin-b group, may be useful as a fertility inducing therapeutic, based upon the ability of activin molecules in stimulating FSH release from cells of the anterior pituitary. See, for example, U.S. Pat. No. 4,798,885. A protein of the invention may also be useful for advancement of the onset of fertility in sexually immature mammals, so as to increase the lifetime reproductive performance of domestic animals such as cows, sheep and pigs.


[0317] The activity of a protein of the invention may, among other means, be measured by the following methods:


[0318] Assays for activin/inhibin activity include, without limitation, those described in: Vale et al., Endocrinology 91:562-572, 1972; Ling et al., Nature 321:779-782, 1986; Vale et al., Nature 321:776-779, 1986; Mason et al., Nature 318:659-663, 1985; Forage et al., Proc Natl Acad Sci USA 83:3091-3095, 1986.


[0319] Chemotactic/Chemokinetic Activity


[0320] A protein of the present invention may have chemotactic or chemokinetic activity (e.g., act as a chemokine) for mammalian cells, including, for example, monocytes, fibroblasts, neutrophils, T-cells, mast cells, eosinophils, epithelial and/or endothelial cells. Chemotactic and chemokinetic proteins can be used to mobilize or attract a desired cell population to a desired site of action. Chemotactic or chemokinetic proteins provide particular advantages in treatment of wounds and other trauma to tissues, as well as in treatment of localized infections. For example, attraction of lymphocytes, monocytes or neutrophils to tumors or sites of infection may result in improved immune responses against the tumor or infecting agent.


[0321] A protein or peptide has chemotactic activity for a particular cell population if it can stimulate, directly or indirectly, the directed orientation or movement of such cell population. Preferably, the protein or peptide has the ability to directly stimulate directed movement of cells. Whether a particular protein has chemotactic activity for a population of cells can be readily determined by employing such protein or peptide in any known assay for cell chemotaxis.


[0322] The activity of a protein of the invention may, among other means, be measured by following methods:


[0323] Assays for chemotactic activity (which will identify proteins that induce or prevent chemotaxis) consist of assays that measure the ability of a protein to induce the migration of cells across a membrane as well as the ability of a protein to induce the adhesion of one cell population to another cell population. Suitable assays for movement and adhesion include, without limitation, those described in: Current Protocols in Immunology, Coligan et al., eds. (Chapter 6.12, Measurement of Alpha and Beta Chemokines 6.12.1-6.12.28); Taub et al. J Clin Invest 95:1370-1376, 1995; Lind et al. APMIS 103:140-146, 1995; Muller et al., Eur J Immunol 25: 1744-1748; Gruberet al. J Immunol 152:5860-5867, 1994; Johnston et al., J Immunol 153: 1762-1768, 1994.


[0324] Hemostatic and Thrombolytic Activity


[0325] A protein of the invention may also exhibit hemostatic or thrombolytic activity. As a result, such a protein is expected to be useful in treatment of various coagulation disorders (including hereditary disorders, such as hemophilias) or to enhance coagulation and other hemostatic events in treating wounds resulting from trauma, surgery or other causes. A protein of the invention may also be useful for dissolving or inhibiting formation of thromboses and for treatment and prevention of conditions resulting therefrom (such as, for example, infarction of cardiac and central nervous system vessels (e.g., stroke).


[0326] The activity of a protein of the invention may,: among other means, be measured by the following methods:


[0327] Assay for hemostatic and thrombolytic activity include, without limitation, those described in: Linet et al., J Clin. Pharmacol. 26:131-140, 1986; Burdick et al., Thrombosis Res. 45:413-419, 1987; Humphrey et al., Fibrinolysis 5:71-79 (1991); Schaub, Prostaglandins 35:467-474, 1988.


[0328] Receptor/Ligand Activity


[0329] A protein of the present invention may also demonstrate activity as receptors, receptor ligands or inhibitors or agonists of receptor/ligand interactions. Examples of such receptors and ligands include, without limitation, cytokine receptors and their ligands, receptor kinases and their ligands, receptor phosphatases and their ligands, receptors involved in cell-cell interactions and their ligands (including without limitation, cellular adhesion molecules (such as selectins, integrins and their ligands) and receptor/ligand pairs involved in antigen presentation, antigen recognition and development of cellular and humoral immune responses). Receptors and ligands are also useful for screening of potential peptide or small molecule inhibitors of the relevant receptor/ligand interaction. A protein of the present invention (including, without limitation, fragments of receptors and ligands) may themselves be useful as inhibitors of receptor/ligand interactions.


[0330] The activity of a protein of the invention may, among other means, be measured by the following methods:


[0331] Suitable assays for receptor-ligand activity include without limitation those described in: Current Protocols in Immunology, Ed by Coligan, et al., Greene Publishing Associates and Wiley-Interscience (Chapter 7.28, Measurement of Cellular Adhesion under static conditions 7.28.1-7.28.22), Takai et al., Proc Natl Acad Sci USA 84:6864-6868, 1987; Bierer et al., J. Exp. Med. 168:1145-1156, 1988; Rosenstein et al., J Exp. Med. 169:149-160 1989; Stoltenborg et al., J Immunol Methods 175:59-68, 1994; Stitt et al., Cell 80:661-670, 1995.


[0332] Anti-Inflammatory Activity


[0333] Proteins of the present invention may also exhibit anti-inflammatory activity. The anti-inflammatory activity may be achieved by providing a stimulus to cells involved in the inflammatory response, by inhibiting or promoting cell-cell interactions (such as, for example, cell adhesion), by inhibiting or promoting chemotaxis of cells involved in the inflammatory process, inhibiting or promoting cell extravasation, or by stimulating or suppressing production of other factors which more directly inhibit or promote an inflammatory response. Proteins exhibiting such activities can be used to treat inflammatory conditions including chronic or acute conditions), including without limitation inflammation associated with infection (such as septic shock, sepsis or systemic inflammatory response syndrome (SIRS)), ischemia-reperfusion injury, endotoxin lethality, arthritis, complement-mediated hyperacute rejection, nephritis, cytokine or chemokine-induced lung injury, inflammatory bowel disease, Crohn's disease or resulting from over production of cytokines such as TNF or IL-1. Proteins of the invention may also be useful to treat anaphylaxis and hypersensitivity to an antigenic substance or material.


[0334] Tumor Inhibition Activity


[0335] In addition to the activities described above for immunological treatment or prevention of tumors, a protein of the invention may exhibit other anti-tumor activities. A protein may inhibit tumor growth directly or indirectly (such as, for example, via ADCC). A protein may exhibit its tumor inhibitory activity by acting on tumor tissue or tumor precursor tissue, by inhibiting formation of tissues necessary to support tumor growth (such as, for example, by inhibiting angiogenesis), by causing production of other factors, agents or cell types which inhibit tumor growth, or by suppressing, eliminating or inhibiting factors,.agents or cell types which promote tumor growth.


[0336] Other Activities


[0337] A protein of the invention may also exhibit one or more of the following additional activities or effects: inhibiting the growth, infection or function of, or killing, infectious agents, including, without limitation, bacteria, viruses, fingi and other parasites; effecting (suppressing or enhancing) bodily characteristics, including, without limitation, height, weight, hair color, eye color, skin, fat to lean ratio or other tissue pigmentation, or organ or body part size or shape (such as, for example, breast augmentation or diminution, change in bone form or shape); effecting biorhythms or circadian cycles or rhythms; effecting the fertility of male or female subjects; effecting the metabolism, catabolism, anabolism, processing, utilization, storage or elimination of dietary fat, lipid, protein, carbohydrate, vitamins, minerals, cofactors or other nutritional factors or component(s); effecting behavioral characteristics, including, without limitation, appetite, libido, stress, cognition (including cognitive disorders), depression (including depressive disorders) and violent behaviors; providing analgesic effects or other pain reducing effects; promoting differentiation and growth of embryonic stem cells in lineages other than hematopoietic lineages; hormonal or endocrine activity; in the case of enzymes, correcting deficiencies of the enzyme and treating deficiency-related diseases; treatment of hyperproliferative disorders (such as, for example, psoriasis); immunoglobulin-like activity (such as, for example, the ability to bind antigens or complement); and the ability to act as an antigen in a vaccine composition to raise an immune response against such protein or another material or entity which is cross-reactive with such protein.


[0338] Neural disorders in general include Parkinson's disease, Alzheimer's disease, Huntington's disease, multiple sclerosis, amyotrophic lateral sclerosis (ALS), peripheral neuropathy, tumors of the nervous system, exposure to neurotoxins, acute brain injury, peripheral nerve trauma or injury, and other neuropathies, epilepsy, and/or tremors.







EQUIVALENTS

[0339] From the foregoing detailed description of the specific embodiments of the invention, it should be apparent that particular novel compositions and methods involving nucleic acids, polypeptides, antibodies, detection and treatment have been described. Although these particular embodiments have been disclosed herein in detail, this has been done by way of example for purposes of illustration only, and is not intended to be limiting with respect to the scope of the appended claims that follow. In particular, it is contemplated by the inventors that various substitutions, alterations, and modifications may be made as a matter of routine for a person of ordinary skill in the art to the invention without departing from the spirit and scope of the invention as defined by the claims. Indeed, various modifications of the invention in addition to those described herein will become apparent to those skilled in the art from the foregoing description and accompanying figures. Such modifications are intended to fall within the scope of the appended claims.
2TABLE 1EntrySequence IdProtein SimilarityProtein DomainProtein ClassificationTissue Expression113089485 (1957, 1958)Novel Protein sim. GBank gi|113764|sp|P25718|AMY1_ECOLI-ALPHA-amylase1020AMYLASE PRECURSOR (1,4-ALPHA-D-GLUCANGLUCANOHYDROLASE)29862020 (493, 494)Novel Protein sim. GBank gi|2127400|pir||S65770 - maltooligosyltrehaloseamylase1006trehalohydrolase - Arthrobacter sp. (strain Q36)378963176 (609, 610)Novel Protein sim. GBank gi|4580331|emb|CAB40107.1| - (AJ001206)amylase1024, 1038putative glycogen debranching enzyme [Streptomyces coellcolor]419646712 (803, 804)Novel Protein sim. GBank gi|728851|sp|Q05884|AMY_STRLI - ALPHA-amylase1008AMYLASE PRECURSOR (1,4-ALPHA-D-GLUCANGLUCANOHYDROLASE)580218543 (5115, 5116)Novel Protein sim. GBank gi|266398|sp|P01088|ITRF_MAIZE -amylaseinhib1002, 1003, 1006, 1007,TRYPSIN/FACTOR XIIA INHIBITOR PRECURSOR (HAGEMAN FACTOR1020, 1022, 1024, 1031INHIBITOR) (CHFI)636996488 (6391, 6392)Novel Protein sim. GBank gi|4757752|ref|NP_004664.1|pANGP -Contains protein domainangiopoietin1001, 1003angiopoietin 3(PF00147) - Fibrinogen beta andgamma chains, C-terminalglobular domain719507966 (3275, 3276)Novel Protein sim. GBank gi|135809|sp|P18292|THRB_RAT -Contains protein domainapolipoprotein1022PROTHROMBIN PRECURSOR(PF00051) - Kringle domain878748816 (1433, 1434)Novel Protein sim. GBank gi|91984|pir||A24700 - apolipoprotein A-Iapolipoprotein1041precursor - rat965864934 (509, 510)Novel Protein sim. GBank gi|1449179|dbj|BAA13101| - (D86506) N-Contains protein domainATPase_associated1014ethylmaleimide sensitive fusion protein [Nicotiana tabacum](PF00004) - ATPases associatedwith various cellular activities(AAA)1016835471 (1903, 1904)Novel Protein sim. GBank gi|295644 (J04421) - ATPase [SaccharomycesContains protein domainATPase_associated1015cerevislae](PF00122) - E1-E2 ATPase1178669846 (6615, 6616)Novel Protein sim. GBank gi|295644 (J04421) - ATPase [SaccharomycesContains protein domainATPase_associated1007cerevislae](PF00122) - E1-E2 ATPase1278696296 (219, 220)Novel Protein sim. GBank gi|417496|sp|P33158|PMGY_STRCO -Contains protein domainATPase_associated1015PHOSPHOGLYCERATE MUTASE (PHOSPHOGLYCEROMUTASE)(PF00300) - Phosphoglycerate(PGAM) (BPG-DEPENDENT PGAM)mutase family1378895589 (5555, 5556)Novel Protein sim. GBank gi|549614|sp|P36137|YK24_YEAST -Contains protein domainATPase_associated1015, 1036HYPOTHETICAL 51.0 KD PROTEIN IN GAP1-NAP1 INTERGENIC(PF00300) - PhosphoglycerateREGIONmutase family1457303171 (5323, 5324)Novel Protein sim. GBank gi|1854476|dbj|BAA07458.1| - (D38380)Contains protein domainATPase_associated1003, 1004, 1006, 1007,transferrin [Rattus norvegicus](PF00405) - Transferrin1020, 10241580248523 (3455, 3456)Novel Protein sim. GBank gi|2326751|emb|CAB10965| - (Z98268)Contains protein domainATPase_associated1002, 1004, 1008, 1020,hypothetical protein Rv1708 [Mycobacterium tuberculosis](PF00991) - ParA family ATPase1022, 1028, 1031, 10361629202483 (2287, 2288)Novel Protein sim. GBank gi|124205|sp|P09064|IF2B_YEAST -ATPase_associated1004, 1020, 1021, 1022,EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT1031EIF-2-BETA1780237817 (1631, 1632)Novel Protein sim. GBank gi|171544 (M34709) - pot. ORF; putativeATPase_associated1004, 1006, 1022, 1035[Saccharomyces cerevisiae]1879874660 (4591, 4592)Novel Protein sim. GBank gi|1730836|sp|P23503|YNY0_YEAST -ATPase_associated1001HYPOTHETICAL 54.2 KD PROTEIN IN ZWF1-BLH1/LAP3 INTERGENICREGION1979829954 (1169, 1170)Novel Protein sim. GBank gi|2131333|pir||S67642 - hypothetical proteinATPase_associated1006, 1007, 1015, 1036YDL100c - yeast (Saccharomyces cerevisiae)2027838931 (7009, 7010)Novel Protein sim. GBank gi|2132688|pir||S64942 - probable membraneATPase_associated1002, 1004, 1020, 1022,protein YLR106c - yeast (Saccharomyces cerevisiae)10312123308866 (1159, 1160)Novel Protein sim. GBank gi|2654870 (AF015302) - RbohAOsp [OryzaATPase_associated1050sativa]2271229404 (5033, 5034)Novel Protein sim. GBank gi|2668599 (AF012537) - ATPaseATPase_associated1000[Pseudomonas aeruginosa]2380496778 (7757, 7758)Novel Protein sim. GBank gi|2895095 (AF011337) - putative E1-E2ATPase_associated1002, 1006, 1008, 1010,ATPase [Mus musculus]10412420290015 (2341, 2342)Novel Protein sim. GBank gi|4585584|emb|CAB40852.1| - (AL049628)ATPase_associated1031putative DNA-binding protein [Streptomyces coelicolor]259945091 (4139, 4140)Novel Protein sim. GBank gi|461975|sp|P34036|DYHC_DICDI - DYNEINATPase_associated1015HEAVY CHAIN, CYTOSOLIC (DYHC)2617940495 (4187, 4188)Novel Protein sim. GBank gi|465495|sp|P33595|YABN_ECOLI -ATPase_associated1036HYPOTHETICAL 63.9 KD PROTEIN IN TBPA-LEUD INTERGENICREGION (ORF103)2756285913 (1495, 1496)Novel Protein sim. GBank gi|4982470|gb|AAD31036.2|AF14193 -ATPase_associated1002(AF141934) sodium bicarbonate cotransporter NBC1 [Mus musculus]2878963164 (8137, 8138)Novel Protein sim. GBank gi|4982470|gb|AAD31036.2|AF14193 -ATPase_associated1022, 1027(AF141934) sodium bicarbonate cotransporter NBC1 [Mus musculus]2995105757 (7549, 7550)Novel Protein sim. GBank gi|5174779|gb|AAD40696.1| - (U87804) 50 kDaATPase_associated1008protein [Caulobacter crescentus]3050098031 (7163, 7164)Novel Protein sim. GBank gi|687204 (U03973) - dynein heavy chainATPase_associated1033isotype 4 [Tripneustes gratilla]3180053071 (8477, 8478)Novel Protein sim. GBank gi|807957|emb|CAA89222| - (Z49259) unknownATPase_associated1001, 1003, 1007, 1015,[Saccharomyces cerevisiae]1023, 1028, 10353285813960 (6501, 6502)Novel Protein sim. GBank gi|118353|sp|P13187|DCOA_KLEPN -biotindep1051OXALOACETATE DECARBOXYLASE ALPHA CHAIN3395104899 (3489, 3490)Novel Protein sim. GBank gi|1345960|sp|P33450|FAT_DROME -Contains protein domaincadherin1004, 1007, 1008, 1046CADHERIN-RELATED TUMOR SUPPRESSOR PRECURSOR (FAT(PF00028) - Cadherin domainPROTEIN)3434405797 (565, 566)Novel Protein sim. GBank gi|2764994|emb|CAA69965| - (Y08715)Contains protein domaincadherin1051vascular cadherin-2 [Mus musculus](PF00028) - Cadherin domain3587898594 (6959, 6960)Novel Protein sim. GBank gi|1825710 (U88183) - ZK377.2 gene productContains protein domaincadherin1013[Caenorhabditis elegans](PF00047) - Immunoglobulindomain3680032194 (8345, 8346)Novel Protein sim. GBank gi|1345960|sp|P33450|FAT_DROME -cadherin1050CADHERIN-RELATED TUMOR SUPPRESSOR PRECURSOR (FATPROTEIN)3723209902 (3369, 3370)Novel Protein sim. GBank gi|2137142|pir||I61186 - alpha-7 integrin -cadherin1002mouse388367741 (1853, 1854)Novel Protein sim. GBank gi|3095102 (AF043257) - beta5B integrin [Muscadherin1008musculus]3979811289 (1929, 1930)Novel Protein sim. GBank gi|3122261|sp|Q12522|IF6_YEAST -cadherin1006EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (EIF-6)4078780522 (4215, 4216)Novel Protein sim. GBank gi|423613|pir||A46052 - vascular cell adhesioncadherin1020molecule 1, GPI-anchored splice form - mouse4178902729 (2379, 2380)Novel Protein sim. GBank gi|466085|sp|P34616|YOG7_CAEEL -cadherin1006HYPOTHETICAL 375.7 KD PROTEIN ZK112.7 PRECURSOR INCHROMOSOME III4229226009 (3259, 3260)Novel Protein sim. GBank gi|5456975|gb|AAD43730.1| - (AF152336)cadherin1051protocadherin gamma B7 [Homo sapiens]4311090708 (8653, 8654)Novel Protein sim. GBank gi|902358|emb|CAA61165| - (X87941) ORFcalcium_channel1004857 [Saccharomyces cerevisiae]4456945240 (1213, 1214)Novel Protein sim. GBank gi|515236|pdb|1PYD|A - SaccharomycesContains protein domaincarboxylase1002, 1022, 1036bayanus(PF00205) - Thiaminepyrophosphate enzymes4578916253 (7447, 7448)Novel Protein sim. GBank gi|585765|sp|P32327|PYC2_YEAST -Contains protein domaincarboxylase1006, 1036PYRUVATE CARBOXYLASE 2 (PYRUVIC CARBOXYLASE 2) (PCB 2)(PF00289) - Carbamoyl-phosphate synthase (CPSase)4679829360 (1891, 1892)Novel Protein sim. GBank gi|2145998|pir||S73055 - pyc protein -Contains protein domaincarboxylase1041Mycobacterium tuberculosis(PF00364) - Biotin-requiringenzymes4780503126 (6595, 6596)Novel Protein sim. GBank gi|1850108|emb|CAB06690| - (Z86089)carboxylase1004, 1006, 1008, 1010,hypothetical protein Rv0263c [Mycobacterium tuberculosis]1015, 1021, 1022, 1025,1028, 10354820725040 (8787, 8788)Novel Protein sim. GBank gi|2506124|sp|P08193|ACCD_ECOLI -carboxylase1022ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASESUBUNIT BETA4919881269 (2869, 2870)Novel Protein sim. GBank gi|2749948 (U94697) - propionyl-CoAcarboxylase1031carboxylase beta chain homolog [Caulobacter crescentus]5037035436 (7151, 7152)Novel Protein sim. GBank gi|5019761|gb|AAD37851.1|AF12642 -carboxylase1010(AF126429) JadJ [Streptomyces venezuelae]518491135 (8343, 8344)Novel Protein sim. GBank gi|137120|sp|P11214|UROT_MOUSE -Contains protein domaincathepsin1031TISSUE PLASMINOGEN ACTIVATOR PRECURSOR (TPA) (T-(PF00051) - Kringle domainPLASMINOGEN ACTIVATOR)5278478107 (1485, 1486)Novel Protein sim. GBank gi|4210355|emb|CAA18442| - (AL022314)Contains protein domaincathepsin1002dJ1170K4.2 (novel Trypsin family protein with class A LDL receptor(PF00089) - Trypsindomains) [Homo sapiens]5357302877 (5459, 5460)Novel Protein sim. GBank gi|4506153|ref|NP_002764.1|pPRSS -Contains protein domaincathepsin1004, 1007, 1024, 1041protease, serine, 8 (prostasin)(PF00089) - Trypsin5480239316 (6353, 6354)Novel Protein sim. GBank gi|134734|sp|P05044|SORC_CRILO - SORCINcathepsin1004, 1031(22 KD PROTEIN) (CP-22) (V19)5578753812 (4167, 4168)Novel Protein sim. GBank gi|1708879|sp|P51885|LUM_MOUSE -Contains protein domaincollagen1002LUMICAN PRECURSOR (LUM) (KERATAN SULFATE(PF00560) - Leucine Rich RepeatPROTEOGLYCAN)5677651711 (1825, 1826)Novel Protein sim. GBank gi|1705570|sp|P51942|CAMA_MOUSE -collagen1035CARTILAGE MATRIX PROTEIN PRECURSOR (MATRILIN-1)5790936827 (1257, 1258)Novel Protein sim. GBank gi|387115 (M15832) - type IV collagen alpha-1collagen1018[Mus musculus]5895419866 (2131, 2132)Novel Protein sim. GBank gi|4539386|emb|CAB37452.1| - (AL035526)collagen1006, 1015, 1021, 1035,extensin-like protein [Arabidopsis thaliana]1036, 1041, 10515986380200 (5865, 5866)Novel Protein sim. GBank gi|4704417|gb|AAD28083.1| - (AF056183) WScollagen1050beta-transducin repeats protein [Homo sapiens]6020756502 (199, 200)Novel Protein sim. GBank gi|765323|bbs|157676 - (S74439) silk fibroincollagen1020heavy chain (C-terminal) [Bombyx mori = silkworms, Peptide Partial, 633aa] [Bombyx mori]6110297625 (1933, 1934)collagen10236295314273 (3611, 3612)collagen1006, 1026, 1031, 10416381953722 (8775, 8776)Novel Protein sim. GBank gi|204657 (K01933) - preprohaptoglobinContains protein domaincomplement1007, 1008, 1014, 1020,[Rattus norvegicus](PF00089) - Trypsin1024, 10366478835967 (3681, 3682)Novel Protein sim. GBank gi|116597|sp|P01026|CO3_RAT -Contains protein domaincomplement1007COMPLEMENT C3 PRECURSOR (CONTAINS: C3A ANAPHYLATOXIN)(PF00207) - Alpha-2-macroglobulin family6590936839 (3791, 3792)Novel Protein sim. GBank gi|116597|sp|P01026|CO3_RAT -Contains protein domaincomplement1004, 1008, 1015, 1018,COMPLEMENT C3 PRECURSOR (CONTAINS: C3A ANAPHYLATOXIN)(PF00207) - Alpha-2-1020, 1024macroglobulin family668522842 (1871, 1872)Novel Protein sim. GBank gi|116608|sp|P06684|CO5_MOUSE -Contains protein domaincomplement1031COMPLEMENT C5 PRECURSOR (CONTAINS: C5A ANAPHYLATOXIN)(PF00207) - Alpha-2-macroglobulin family678522050 (5503, 5504)Novel Protein sim. GBank gi|112893|sp|P14046|A1I3_RAT - ALPHA-1-Contains protein domaincomplement1003INHIBITOR III PRECURSOR(PF01835) - Alpha-2-macroglobulin family N-terminalregion6852563488 (3181, 3182)Novel Protein sim. GBank gi|129701|sp|P15873|PCNA_YEAST -cyclin1002PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA)6920738462 (1821, 1822)Novel Protein sim. GBank gi|1345736|sp|P20437|CG11_YEAST - G1/S-cyclin1031SPECIFIC CYCLIN CLN17094143356 (5979, 5980)Novel Protein sim. GBank gi|117245|sp|P12939|CPD5_RAT -Contains protein domaincyto4501008, 1031CYTOCHROME P450 2D5 (CYPIID5) (P450-DB5) (P450-CMF1B)(PF00067) - Cytochrome P450(DEBRISOQUINE 4-HYDROXYLASE)7129459361 (317, 318)Novel Protein sim. GBank gi|117254|sp|P24461 |CPG1_RABIT -Contains protein domaincyto4501020CYTOCHROME P450 2G1 (CYPIIG1) (P450-NMB) (OLFACTIVE)(PF00067) - Cytochrome P4507216835554 (2401, 2402)Novel Protein sim. GBank gi|1706098|sp|P51590|CPJ3_RAT -Contains protein domaincyto4501015CYTOCHROME P450 2J3 (CYPIIJ3)(PF00067) - Cytochrome P4507371228838 (7637, 7638)Novel Protein sim. GBank gi|2117409|pir||I49625 - testosterone 16a-Contains protein domaincyto4501006, 1014, 1020hydroxylase type b - mouse(PF00067) - Cytochrome P4507429246103 (1343, 1344)Novel Protein sim. GBank gi|2760837|gb|AAB95305.1| - (AC003105)Contains protein domaincyto4501007putative cytochrome P450 [Arabidopsis thaliana](PF00067) - Cytochrome P4507565460027 (6215, 6216)Novel Protein sim. GBank gi|320081|pir||A34272 - testosterone 7 alpha-Contains protein domaincyto4501051hydroxylase (EC 1.14.14.—) cytochrome P450 2A1 - rat(PF00067) - Cytochrome P4507625170872 (2171, 2172)Novel Protein sim. GBank gi|498858 (U09734) - testosterone 6-beta-Contains protein domaincyto4501003, 1007hydroxylase [Rattus norvegicus](PF00067) - Cytochrome P450778489815 (7075, 7076)Novel Protein sim. GBank gi|1421741 (U54770) - cytochrome P450cyto4501031homolog [Lycopersicon esculentum]7838927279 (1693, 1694)Novel Protein sim. GBank gi|4587057|dbj|BAA76602.1| - (AB018596)cyto4501006sterol 12-alpha hydroxylase [Rattus norvegicus]9678516862 (4847, 4848)Novel Protein sim. GBank gi|729306|sp|P06773|DCTD_YEAST -deaminase1007DEOXYCYTIDYLATE DEAMINASE (DCMP DEAMINASE)979367144 (3133, 3134)Novel Protein sim. GBank gi|2497263|sp|Q51375|LEU3_PSEAE - 3-Contains protein domaindehydrogenase1015ISOPROPYLMALATE DEHYDROGENASE (BETA-IPM(PF00180) - Isocitrate andDEHYDROGENASE) (IMDH) (3-IPM-DH)isopropylmalate dehydrogenases9885530525 (7209, 7210)Novel Protein sim. GBank gi|3790552 (AF069035) - isocitrateContains protein domaindehydrogenase1035dehydrogenase [Coxiella bumetii](PF00180) - Isocitrate andisopropylmalate dehydrogenases9966396086 (4085, 4086)Novel Protein sim. GBank gi|4033783|sp|P42958|YCSA_BACSU -Contains protein domaindehydrogenase1006HYPOTHETICAL 33.1 KD PROTEIN IN MTLD-SIPU INTERGENIC(PF00180) - Isocitrate andREGIONisopropylmalate dehydrogenases10013022417 (2971, 2972)Novel Protein sim. GBank gi|1477946|bbs|177171 - (S81735) leucineContains protein domaindehydrogenase1022dehydrogenase (EC 1.4.1.9) [Bacillus licheniformls, TSN9, Peptide, 364(PF00208) -aa] [Bacillus licheniformis]Glutamate/Leucine/Phenylalanine/Valine dehydrogenase10180249569 (1309, 1310)Novel Protein sim. GBank gi|322228|pir||S32227 - glutamateContains protein domaindehydrogenase1004, 1051dehydrogenase (NADP+) (EC 1.4.1.4) - Corynebacterium glutamicum(PF00208) -Glutamate/Leucine/Phenylalanine/Valine dehydrogenase10225261707 (2575, 2576)Novel Protein sim. GBank gi|3947740|emb|CAA77186| - (Y18476) NADHContains protein domaindehydrogenase1006dehydrogenase subunit 2 [Trichophyton rubrum](PF00361) - NADH-Ubiquinone/plastoquinone(complex I), various chains10380083230 (2743, 2744)Novel Protein sim. GBank gi|1352619|sp|P19262|ODO2_YEAST -Contains protein domaindehydrogenase1001, 1006, 1008, 1014,DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE COMPONENT OF 2-(PF00364) - Biotin-requiring1015, 1022, 1041OXOGLUTARATE DEHYDROGENASE COMPLEX PRECURSOR (E2)enzymes10482133796 (4013, 4014)Novel Protein sim. GBank gi|2132191|pir||S62008 - hypothetical proteinContains protein domaindehydrogenase1002, 1003, 1004, 1006,YPL113c - yeast (Saccharomyces cerevisiae)(PF00389) - D-isomer specific 2-1014, 1020, 1024, 1031,hydroxyacid dehydrogenases104110527983417 (5005, 5006)Novel Protein sim. GBank gi|2708656 (AF037440) - D-3-Contains protein domaindehydrogenase1006phosphoglycerate dehydrogenase [Edwardsiella ictaluri](PF00389) - D-isomer specific 2-hydroxyacid dehydrogenases10680080941 (8083, 8064)Novel Protein sim. GBank gi|3122346|sp|Q59642|LDHD_PEDAC - D-Contains protein domaindehydrogenase1031LACTATE DEHYDROGENASE (D-LDH)(PF00389) - D-Isomer specific 2-hydroxyacid dehydrogenases10782442962 (6449, 6450)Novel Protein sim. GBank gi|3123275|sp|P35136|SERA_BACSU - D-3-Contains protein domaindehydrogenase1001, 1020, 1025, 1031PHOSPHOGLYCERATE DEHYDROGENASE (PGDH)(PF00389) - D-isomer specific 2-hydroxyacid dehydrogenases10814218605 (5049, 5050)Novel Protein sim. GBank gi|4155559 (AE001527) - D-3-Contains protein domaindehydrogenase1050PHOSPHOGLYCERATE DEHYDROGENASE [Helicobacter pylori J99](PF00389) - D-Isomer specific 2-hydroxyacid dehydrogenases10994745539 (8077, 8078)Novel Protein sim. GBank gi|205294 (M26594) - malic enzyme [RattusContains protein domaindehydrogenase1002norvegicus](PF00390) - Malic enzyme11017673515 (8729, 8730)Novel Protein sim. GBank gi|3047125 (AF058919) - No definition lineContains protein domaindehydrogenase1006found [Arabidopsis thaliana](PF00390) - Malic enzyme11112997849 (7605, 7606)Novel Protein sim. GBank gi|581228|emb|CAA39419| - (X55956)Contains protein domaindehydrogenase1025altemative [Escherichia coli](PF00390) - Malic enzyme11247656812 (3459, 3460)Novel Protein sim. GBank gi|1321895|emb|CAA63250| - (X92503) gndContains protein domaindehydrogenase1026[Mycobacterium smegmatis](PF00393) - 6-phosphogluconatedehydrogenases11339554838 (5427, 5428)Novel Protein sim. GBank gi|2117216|emb|CAB09054| - (Z95585) gnd2Contains protein domaindehydrogenase1036[Mycobacterium tuberculosis](PF00393) - 6-phosphogluconatedehydrogenases11482443593 (4667, 4668)Novel Protein sim. GBank gi|2829816|sp|P95171|NUOK_MYCTU - NADHContains protein domaindehydrogenase1001, 1004, 1010, 1020,DEHYDROGENASE I CHAIN K (NADH-UBIQUINONE(PF00420) - NADH-1022, 1031OXIDOREDUCTASE CHAIN 11) (NUO11)ubiquinone/plastoquinoneoxidoreductase chain 4L11580419176 (2053, 2054)Novel Protein sim. GBank gi|1877329|emb|CAB07077| - (Z92771) fadE25Contains protein domaindehydrogenase1002, 1003, 1004, 1008,[Mycobacterium tuberculosis](PF00441) - Acyl-CoA1015, 1020, 1022, 1023,dehydrogenase1031, 105011679633434 (8485, 8486)Novel Protein sim. GBank gi|1073456|pir||S47810 - probable alcoholContains protein domaindehydrogenase1036dehydrogenase (EC 1.1.1.1) - Escherichia coli(PF00465) - Iron-containingalcohol dehydrogenases11721427080 (6543, 6544)Novel Protein sim. GBank gi|1732040 (U55016) - alcohol dehydrogenaseContains protein domaindehydrogenase1020[Actinobacillus pleuropneumoniae](PF00465) - Iron-containingalcohol dehydrogenases11880409743 (603, 604)Novel Protein sim. GBank gi|5459404|emb|CAB50762.1| - (AL096839)Contains protein domaindehydrogenase1001, 1003, 1004, 1014,putative glucose-6-phosphate 1-dehydrogenase [Streptomyces coelicolor](PF00479) - Glucose-6-phosphate1020, 1022, 1024, 1026dehydrogenase11980060092 (6903, 6904)Novel Protein sim. GBank gi|1708477|sp|P50095|IMH2_YEAST -Contains protein domaindehydrogenase1020, 1041PROBABLE INOSINE-5′-MONOPHOSPHATE DEHYDROGENASE (IMP(PF00571) - CBS domainDEHYDROGENASE) (IMPDH) (IMPD)12087454335 (4901, 4902)Novel Protein sim. GBank gi|5104022|dbj|BAA79338.1| - (AP000059)Contains protein domaindehydrogenase1002, 1023, 1055147aa long hypothetical protein [Aeropyrum pemix](PF00571) - CBS domain12179489230 (6997, 6998)Novel Protein sim. GBank gi|3242279|emb|CAA16667| - (AL021646) nuoLContains protein domaindehydrogenase1035, 1036[Mycobacterium tuberculosis](PF00662) - NADH-Ubiquinoneoxidoreductase (complex I), chain5 N-terminus12279624876 (785, 786)Novel Protein sim. GBank gi|231993|sp|Q00711|DHSA_YEAST -Contains protein domaindehydrogenase1004, 1041SUCCINATE DEHYDROGENASE (UBIQUINONE) FLAVOPROTEIN(PF00890) - FAD binding domainSUBUNIT PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF COMPLEXII)12320292751 (8493, 8494)Novel Protein sim. GBank gi|3329036 (AE001330) - SuccinateContains protein domaindehydrogenase1031Dehydrogenase [Chlamydia trachomatis](PF00890) - FAD binding domain12420617170 (7759, 7760)Novel Protein sim. GBank gi|2506955|sp|P33601|NUOE_ECOLI - NADHContains protein domaindehydrogenase1003DEHYDROGENASE I CHAIN E (NADH-UBIQUINONE(PF01257) - Respiratory-chainOXIDOREDUCTASE CHAIN 5) (NUO5)NADH dehydrogenase 24 Kdsubunit12520695817 (8371, 8372)Novel Protein sim. GBank gi|1041092 (L48550) - methylmalonic aciddehydrogenase1031semialdehyde dehydrogenase [Streptomyces coelicolor]12678484712 (515, 516)Novel Protein sim. GBank gi|1076668|pir||S52261 - NADH dehydrogenasedehydrogenase1024(EC 1.6.99.3) - potato12746850827 (3627, 3628)Novel Protein sim. GBank gi|1169602|sp|P45382|FADH_PARDE -dehydrogenase1026GLUTATHIONE-DEPENDENT FORMALDEHYDE DEHYDROGENASE(FDH) (FALDH) (GD-FALDH)12825306971 (3101, 3102)Novel Protein sim. GBank gi|1170799|sp|P46454|LLDD_HAEIN - L-dehydrogenase1020LACTATE DEHYDROGENASE (CYTOCHROME)12913526472 (2345, 2346)Novel Protein sim. GBank gi|1172706|sp|P45107|PTA_HAEIN -dehydrogenase1025PHOSPHATE ACETYLTRANSFERASE (PHOSPHOTRANSACETYLASE)13080029007 (5997, 5998)Novel Protein sim. GBank gi|120777|sp|P25526|GABD_ECOLI -dehydrogenase1004, 1017SUCCINATE-SEMIALDEHYDE DEHYDROGENASE (NADP+) (SSDH)13178805052 (8239, 8240)Novel Protein sim. GBank gi|1223606|emb|CAA65298| - (X96434) moxRdehydrogenase1014[Borrelia burgdorferi]1325621309 (2895, 2896)Novel Protein sim. GBank gi|123178|sp|P24226|HISX_BRAOC -dehydrogenase1055HISTIDINOL DEHYDROGENASE, CHLOROPLAST PRECURSOR (HDH)13379398232 (3271, 3272)Novel Protein sim. GBank gi|1262198 (U39263) - proline dehydrogenasedehydrogenase1004[Agrobacterium tumefaciens]13479580022 (5545, 5546)Novel Protein sim. GBank gi|128741|sp|P03910|NU4M_BOVIN - NADH-dehydrogenase1008UBIQUINONE OXIDOREDUCTASE CHAIN 41355496494 (5075, 5076)Novel Protein sim. GBank gi|1346120|sp|P49095|GCSP_YEAST -dehydrogenase1055GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR(GLYCINE DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)13666404023 (6207, 6208)Novel Protein sim. GBank gi|146177 (M20938) - glycerol-3-phosphatedehydrogenase1020dehydrogenase subunit A [Escherichia coli]13725264259 (2187, 2188)Novel Protein sim. GBank gi|1652865|dbj|BAA17783| - (D90909) NADHdehydrogenase1002dehydrogenase [Synechocystis sp.]13880249306 (1565, 1566)Novel Protein sim. GBank gi|1658402 (U73807) - formate dehydrogenasedehydrogenase1004, 1020, 1028, 1039beta subunit [Moorella thermoacetica]13911100223 (3499, 3500)Novel Protein sim. GBank gi|1706887|sp|P51696|FOLD_PHOPO -dehydrogenase1020METHYLENETETRAHYDROFOLATE DEHYDROGENASE/METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE14019881142 (8387, 8388)Novel Protein sim. GBank gi|1707879|sp|P54261|GCST_SYNY3 -dehydrogenase1031PROBABLE AMINOMETHYL TRANSFERASE (GLYCINE CLEAVAGESYSTEM T PROTEIN)14129463275 (7459, 7460)Novel Protein sim. GBank gi|1710631|sp|P55006|ROH3_RAT - RETINOLdehydrogenase1020DEHYDROGENASE TYPE III (RODH III)14286475450 (2047, 2048)Novel Protein sim. GBank gi|1723372|sp|Q01333|YCR4_ERWHE -dehydrogenase1045HYPOTHETICAL 11.2 KD PROTEIN IN CRTE 3′REGION (ORF4)1439524765 (7755, 7756)Novel Protein sim. GBank gi|1730163|sp|P51009|G3P_XANFL -dehydrogenase1031GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)14487456832 (6409, 6410)Novel Protein sim. GBank gi|1848283 (U87982) - Sorghum bicolordehydrogenase1023aldehyde dehydrogenase (Dha1) mRNA, partial sequence14533202157 (3629, 3630)Novel Protein sim. GBank gi|2108268|emb|CAA63467| - (X92868) NADP-dehydrogenase1024dependent alcohol dehydrogenase [Bacillus subtilis]14611070327 (8561, 8562)Novel Protein sim. GBank gi|2121110|pir||I69649 - dTDP-6-deoxy-L-dehydrogenase1022mannose-dehydrogenase - Escherichia coli14711355842 (8171, 8172)Novel Protein sim. GBank gi|2144098|pir||I56573 - SC2 - ratdehydrogenase105514879182952 (7731, 7732)Novel Protein sim. GBank gi|2493994|sp|Q47945|CYCA_GLUSU -dehydrogenase1003ALCOHOL DEHYDROGENASE CYTOCHROME C SUBUNITPRECURSOR (CYTOCHROME C-553) (C553) (G3-ADH SUBUNIT II)14925165320 (5447, 5448)Novel Protein sim. GBank gi|2498413|sp|Q48485|GLF1_KLEPN -dehydrogenase1002PROBABLE UDP-GALACTOPYRANOSE MUTASE15056307045 (1285, 1286)Novel Protein sim. GBank gi|2498557|sp|P77580|MHPF_ECOLI -dehydrogenase1002, 1015, 1021ACETALDEHYDE DEHYDROGENASE (ACETALDEHYDEDEHYDROGENASE [ACETYLATING])15179603387 (7911, 7912)Novel Protein sim. GBank gi|2578379|emb|CAA15464| - (AL008609)dehydrogenase1031glycine dehydrogenase (decarboxylating) [Mycobacterium leprae]15280248682 (6327, 6328)Novel Protein sim. GBank gi|2624302|emb|CAA15575| - (AL008967) aiddehydrogenase1004, 1008, 1010, 1028,[Mycobacterium tuberculosis]103115330422405 (2133, 2134)Novel Protein sim. GBank gi|2661213 (U89280) - oxidative 17 betadehydrogenase1006hydroxysteroid dehydrogenase type 6 [Rattus norvegicus]15494315307 (4067, 4068)Novel Protein sim. GBank gi|2695834|emb|CAA15904| - (AL021006) sucAdehydrogenase1003, 1007, 1008, 1021,[Mycobacterium tuberculosis]1022, 1031, 103615595289134 (1589, 1590)Novel Protein sim. GBank gi|2894186|emb|CAA11792.1| - (AJ223999)dehydrogenase1003, 1004, 1008, 1022,PCZA363.1 [Amycolatopsis orientalis]103615644985946 (5867, 5868)Novel Protein sim. GBank gi|2894212|emb|CAA17075.1| - (AL021841)dehydrogenase1026IpdA [Mycobacterium tuberculosis]15780027352 (6859, 6860)Novel Protein sim. GBank gi|2909538|emb|CAA17417| - (AL021933)dehydrogenase1004, 1023, 1031hypothetical protein Rv0462 [Mycobacterium tuberculosis]15880217428 (6011, 6012)Novel Protein sim. GBank gi|297922|emb|CAA46852| - (X66052) D-dehydrogenase1008, 1010, 1020, 1022,lactate dehydrogenase (cytochrome) [Saccharomyces cerevisiae]102815927362878 (7839, 7840)Novel Protein sim. GBank gi|297922|emb|CAA46852| - (X66052) D-dehydrogenase1020lactate dehydrogenase (cytochrome) [Saccharomyces cerevisiae]16080306398 (5203, 5204)Novel Protein sim. GBank gi|2995297|emb|CAA18326| - (AL022268)dehydrogenase1000, 1002, 1003, 1004,hypothetical protein SC4H2.10c [Streptomyces coelicolor]1006, 1008, 1010, 1020,1023, 1025, 1026, 1031,1035, 103616113085569 (3485, 3486)Novel Protein sim. GBank gi|3121992|sp|P81178|DHAM_MESAU -dehydrogenase1025ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL (CLASS 2) (ALDH1)(ALDH-E2)16211385242 (4991, 4992)Novel Protein sim. GBank gi|3122213|sp|O26327|HISX_METTH -dehydrogenase1014HISTIDINOL DEHYDROGENASE (HDH)16312904364 (7385, 7386)Novel Protein sim. GBank gi|3122572|sp|Q43644|NUAM_SOLTU - NADH-dehydrogenase1028, 1047UBIQUINONE OXIDOREDUCTASE 75 KD SUBUNIT PRECURSOR(COMPLEX I-75 KD) (CI-75 KD) (76 KD MITOCHONDRIAL COMPLEX ISUBUNIT)16487896233 (6323, 6324)Novel Protein sim. GBank gi|3273341|dbj|BAA31212| - (AB015756)dehydrogenase1013succinate dehydrogenase flavoprotein subunit [Rhodospirillum rubrum]16527831414 (5715, 5716)Novel Protein sim. GBank gi|3879684|emb|CAA98524| - (Z74042)dehydrogenase1003predicted using Genefinder; Similarity to Haemophilus 3-oxoacyl-(acyl-carrier protein) reductase (SW; FABG_HAEIN); cDNA EST yk470b2.3comes from this gene; cDNA EST yk470b2.5 comes from this gene[Caenorhabditis elegans]16646857309 (7981, 7982)Novel Protein sim. GBank gi|3914212|sp|P97608|OPLA_RAT - 5-dehydrogenase1000OXOPROLINASE (5-OXO-L-PROLINASE) (PYROGLUTAMASE) (5-OPASE)16778367967 (2079, 2080)Novel Protein sim. GBank gi|3928680|gb|AAC79659| - (AF068264) NAD+dehydrogenase1041dependent acetaldehyde dehydrogenase [Pseudomonas aeruginosa]16856151069 (639, 640)Novel Protein sim. GBank gi|4154555 (AE001444) - Proline/pyrroline-5-dehydrogenase1041carboxylate dehydrogenase [Helicobacter pylori J99]16910856009 (4565, 4566)Novel Protein sim. GBank gi|4512377|dbj|BAA75341.1| - (AB011837)dehydrogenase1001sorbitol dehydrogenase [Bacillus halodurans]17017673620 (8087, 8088)Novel Protein sim. GBank gi|4574121|gb|AAD23901.1|AF00941 -dehydrogenase1006(AF009415) choline dehydrogenase [Staphylococcus xylosus]17111122707 (1669, 1670)Novel Protein sim. GBank gi|464254|sp|P34942|NUDM_BOVIN - NADH-dehydrogenase1031UBIQUINONE OXIDOREDUCTASE 42 KD SUBUNIT PRECURSOR(COMPLEX I-42 KD) (CI-42 KD)17220430075 (8617, 8618)Novel Protein sim. GBank gi|4835329|emb|CAB42951.1| - (AL049863)dehydrogenase1008putative dehydrogenase/reductase [Streptomyces coelicolor]17366314518 (8277, 8278)Novel Protein sim. GBank gi|4894690|gb|AAD32592.1|AF12672 -dehydrogenase1014(AF126720) homoserine dehydrogenase [Mycobacterium smegmatis]17435819353 (2899, 2900)Novel Protein sim. GBank gi|4982213|gb|AAD36707.1|AE00180 -dehydrogenase1014(AE001806) glutamate synthase, beta subunit [Thermotoga maritima]17580059042 (6813, 6814)Novel Protein sim. GBank gi|5042272|emb|CAB44526.1| - (AL078618)dehydrogenase1022nuoF, NADH dehydrogenase subunit [Streptomyces coelicolor]17619523405 (4467, 4468)Novel Protein sim. GBank gi|5042273|emb|CAB44527.1| - (AL078618)dehydrogenase1020nuoE, NADH dehydrogenase subunit [Streptomyces coelicolor]17780248762 (1519, 1520)Novel Protein sim. GBank gi|5042274|emb|CAB44528.1| - (AL078618)dehydrogenase1004, 1021, 1023, 1041,nuoD, NADH dehydrogenase subunit [Streptomyces coelicolor]104617880079093 (165, 166)Novel Protein sim. GBank gi|5139562|emb|CAB45580.1| - (AL079355)dehydrogenase1031putative glutathione-dependent aldehyde dehydrogenase [Streptomycescoelicolor]17920285943 (1751, 1752)Novel Protein sim. GBank gi|544104|sp|Q02861|CRTI_MYXXA -dehydrogenase1031PHYTOENE DEHYDROGENASE (PHYTOENE DESATURASE)18011686851 (8753, 8754)Novel Protein sim. GBank gi|5441779|emb|CAB46803.1| - (AL096811)dehydrogenase1028putative alcohol dehydrogenase (zinc-binding) [Streptomyces coelicolorA3(2)]18152561186 (7085, 7086)Novel Protein sim. GBank gi|5459146|emb|CAB50632.1| - (AJ248288)dehydrogenase1004, 1010, 1028PAB1214 [Pyrococcus abyssl]18229002226 (321, 322)Novel Protein sim. GBank gi|5508821|gb|AAD43988.1|U59485_-dehydrogenase1036(U59485) AttK [Agrobacterium tumefaciens]18382448116 (6627, 6628)Novel Protein sim. GBank gi|584729|sp|P38113|ADH5_YEAST -dehydrogenase1001, 1002, 1004, 1006,ALCOHOL DEHYDROGENASE V1021, 1022, 1031, 103618454995204 (7321, 7322)Novel Protein sim. GBank gi|585754|sp|P24217|PTFA_ECOLI - PTSdehydrogenase1026SYSTEM, FRUCTOSE-SPECIFIC IIA/FPR COMPONENT (EIIA-FRU)(FRUCTOSE-PERMEASE IIA/FPR COMPONENT)(PHOSPHOTRANSFERASE ENZYME II, A/FPR COMPONENT)(PHOSPHOTRANSFERASE FPR PROTEIN) (PSEUDO-HPR) (EIII-FRU)(FRUCTOSE PTS DIPHO . . .18511073062 (8759, 8760)Novel Protein sim. GBank gi|699253 (U15183) - lipoamide dehydrogenasedehydrogenase1031[Mycobacterium leprae]18680478752 (5455, 5456)Novel Protein sim. GBank gi|731294|sp|P39713|YAG1_YEAST -dehydrogenase1002, 1004, 1006, 1010,HYPOTHETICAL ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE1020, 1021, 1024, 1031,PROTEIN IN GDH3-CNE1 INTERGENIC REGION104118786464887 (1413, 1414)Novel Protein sim. GBank gi|757827|emb|CAA86041| - (Z37980) 5-dehydrogenase1026carboxy-2-hydroxymuconate semialdehyde dehydrogenase [Escherichiacoli]18823307700 (1189, 1190)Novel Protein sim. GBank gi|1169601|sp|P46312|FD6C_ARATH -Contains protein domaindesaturase1015OMEGA-6 FATTY ACID DESATURASE, CHLOROPLAST PRECURSOR(PF00487) - Fatty acid desaturase18929000956 (7711, 7712)Novel Protein sim. GBank gi|1345970|sp|P48620|FD3C_SESIN - OMEGA-Contains protein domaindesaturase10153 FATTY ACID DESATURASE, CHLOROPLAST PRECURSOR(PF00487) - Fatty acid desaturase19028846340 (2499, 2500)Novel Protein sim. GBank gi|4240305|dbj|BAA74931.1| - (AB020715)desaturase1024KIAA0908 protein [Homo sapiens]19135893288 (1739, 1740)Novel Protein sim. GBank gi|253181|bbs|110564 - NSR1=nucleolinContains protein domaindna_ma_bind1050homolog [Saccharomyces cerevisiae, Peptide, 249 aa](PF00076) - RNA recognitionmotif. (a.k.a. RRM, RBD, or RNPdomain)19282460888 (5623, 5624)Novel Protein sim. GBank gi|1723819|sp|P53186|YGD4_YEAST -Contains protein domaindna_ma_bind1001, 1004, 1006, 1021,HYPOTHETICAL 13.6 KD PROTEIN IN MIG1-AGA2 INTERGENIC(PF00096) - Zinc finger, C2H21035REGIONtype19380039350 (5571, 5572)Novel Protein sim. GBank gi|2315332 (AF016437) - contains similarity toContains protein domaindna_ma_bind1022, 1031a C2H2-type zinc finger [Caenorhabditis elegans](PF00096) - Zinc finger, C2H2type19427932691 (1633, 1634)Novel Protein sim. GBank gi|2645674 (AF031955) - krupple-related zincContains protein domaindna_ma_bind1003finger protein [Mus musculus](PF00096) - Zinc finger, C2H2type19580500321 (6689, 6690)Novel Protein sim. GBank gi|3437|emb|CAA39084| - (X55442) MIG1Contains protein domaindna_ma_bind1001, 1002, 1003, 1004,[Saccharomyces cerevisiae](PF00096) - Zinc finger, C2H21006, 1007, 1008, 1010,type1015, 1020, 1021, 1022,1024, 1028, 1031, 1036,104119633202227 (4465, 4466)Novel Protein sim. GBank gi|3808293 (AF072440) - nitrogen regulatoryContains protein domaindna_ma_bind1024protein [Enterobacter gergoviae](PF00158) - Sigma-54transcription factors19778761151 (8025, 8026)Novel Protein sim. GBank gi|729736|sp|P40619|HMGL_PHANI - HMG1/2-Contains protein domaindna_ma_bind1015LIKE PROTEIN(PF00505) - HMG (high mobilitygroup) box19880206269 (845, 846)Novel Protein sim. GBank gi|1082703|pir||S52491 - polyadenylate bindingdna_ma_bind1031protein II - human19921146786 (471, 472)Novel Protein sim. GBank gi|1199536|emb|CAA64900| - (X95644) ORFdna_ma_bind1020, 10552310 [Saccharomyces cerevisiae]20013517837 (1395, 1396)Novel Protein sim. GBank gi|131639|sp|P15639|PUR9_ECOLI -dna_ma_bind1022PHOSPHORIBOSYLAMINOIMIDAZOLECARBOXAMIDEFORMYLTRANSFERASE (AICAR TRANSFORMYLASE)/IMPCYCLOHYDROLASE (INOSINICASE) (IMP SYNTHETASE) (ATIC)20127805718 (6373, 6374)Novel Protein sim. GBank gi|133144|sp|P25299|RN15_YEAST - MRNA 3′-dna_ma_bind1003END PROCESSING PROTEIN RNA1520278754079 (6227, 6228)Novel Protein sim. GBank gi|172372 (M58728) - DNA-binding proteindna_ma_bind1006[Saccharomyces cerevisiae]20310246066 (5745, 5746)Novel Protein sim. GBank gi|1723880|sp|P53152|YGI7_YEAST -dna_ma_bind1004HYPOTHETICAL 15.5 KD PROTEIN IN MFAL2-MAD1 INTERGENICREGION20478670380 (5097, 5098)Novel Protein sim. GBank gi|2072966 (U93570) - p40 [Homo sapiens]dna_ma_bind102420520465780 (5303, 5304)Novel Protein sim. GBank gi|2506359|sp|P36659|CBPA_ECOLI -dna_ma_bind1008CURVED DNA-BINDING PROTEIN20632291638 (7925, 7926)Novel Protein sim. GBank gi|3510645 (AF051348) - putative REX-2 [Musdna_ma_bind1000musculus]20788098784 (8799, 8800)Novel Protein sim. GBank gi|4115925 (AF118222) - contains similarity todna_ma_bind1022, 1023RNA recognition motifs (Pfam: PF00076, Score=5.5e−23, N=2)[Arabidopsis thaliana]20810885749 (733, 734)Novel Protein sim. GBank gi|4455696|emb|CAB36671| - (AL035500)dna_ma_bind1022putative phosphoribosylaminoimidazolecarboxamide formyltransferase[Mycobacterium leprae]20910886522 (1471, 1472)Novel Protein sim. GBank gi|480289|pir||S36629 - polypyrimidine tract-dna_ma_bind1020binding protein - rat (fragment)21057295904 (5235, 5236)Novel Protein sim. GBank gi|5052081|gb|AAD38426.1|AF08256 -dna_ma_bind1020(AF082568) zinc finger type transcription factor MZF-3 [Mus musculus]21180049357 (3737, 3738)Novel Protein sim. GBank gi|116230|sp|P28598|CH60_BACSU - 60 KDContains protein domaineph1006, 1008, 1015CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)(PF00118) - TCP-1/cpn60chaperonin family21279199664 (6883, 6884)Novel Protein sim. GBank gi|2980899|dbj|BAA25207| - (AB008137)Contains protein domaineph1022similar to GroEL protein; stress protein [Enterobacter asburiae](PF00118) - TCP-1/cpn60chaperonin family21378916267 (287, 288)Novel Protein sim. GBank gi|116194|sp|P19422|CH10_COXBU - 10 KDContains protein domaineph1036CHAPERONIN (PROTEIN CPN10) (PROTEIN GROES) (HEAT SHOCK(PF00166) - Chaperonins 10 KdPROTEIN A)subunit21416792310 (3929, 3930)Novel Protein sim. GBank gi|2267597 (AF009413) - 10 kDa chaperoninContains protein domaineph1041[Oryza sativa](PF00166) - Chaperonins 10 Kdsubunit21520730763 (5597, 5598)Novel Protein sim. GBank gi|123726|sp|P10413|HTPG_ECOLI - HEATContains protein domaineph1004SHOCK PROTEIN HTPG (HIGH TEMPERATURE PROTEIN G) (HEAT(PF00183) - Hsp90 proteinSHOCK PROTEIN C62.5)21647652740 (7019, 7020)Novel Protein sim. GBank gi|298028|emb|CAA50548| - (X71416) TOR2Contains protein domaineph1026[Saccharomyces cerevisiae](PF00454) - Phosphatidylinositol3-and 4-kinases21727835670 (4727, 4728)Novel Protein sim. GBank gi|586048|sp|P37297|STT4_YEAST -Contains protein domaineph1004PHOSPHATIDYLINOSITOL 4-KINASE STT4 (PI4-KINASE) (PTDINS-4-(PF00454) - PhosphatidylinositolKINASE)3-and 4-kinases21836852700 (8573, 8574)Novel Protein sim. GBank gi|138852|sp|P26537|VL1_HPV5B - MAJORContains protein domaineph1050CAPSID PROTEIN L1(PF00500) - L1 (late) protein21927847138 (2963, 2964)Novel Protein sim. GBank gi|1778689|dbj|BAA07344| - (D38146) B61Contains protein domaineph1003[Mus musculus](PF00812) - Ephrin22017226904 (6837, 6838)Novel Protein sim. GBank gi|1076758|pir||S49340 - heat-shock proteineph1036precursor - rye22157292707 (2473, 2474)Novel Protein sim. GBank gi|134975|sp|P15705|STI1_YEAST - HEATeph1002, 1003, 1004, 1020,SHOCK PROTEIN STI11022, 103122278391154 (4957, 4958)Novel Protein sim. GBank gi|139216|sp|P22543|VP34_YEAST -eph1024PHOSPHATIDYLINOSITOL 3-KINASE VPS34 (PI3-KINASE) (PTDINS-3-KINASE) (PI3K) (VACUOLAR SORTING PROTEIN 34)22320385928 (6571, 6572)Novel Protein sim. GBank gi|2314540|gb|AAD08413.1| - (AE000637) typeeph1003III restriction enzyme M protein (mod) [Helicobacter pylori 26695]22423227180 (1995, 1996)Novel Protein sim. GBank gi|298028|emb|CAA50548| - (X71416) TOR2eph1006[Saccharomyces cerevisiae]22511076446 (1791, 1792)Novel Protein sim. GBank gi|3261784|emb|CAB08997| - (Z95558) htpXeph1008[Mycobacterium tuberculosis]22610309804 (7423, 7424)Novel Protein sim. GBank gi|4001713|dbj|BAA35087.1| - (AB015879)eph1036DnaK [Porphyromonas gingivalis]22729346941 (241, 242)Novel Protein sim. GBank gi|450880|emb|CAA54419| - (X77199) heateph1020shock cognate 70-1 [Arabidopsis thaliana]22819903931 (1717, 1718)Novel Protein sim. GBank gi|462047|sp|P34756|FAB1_YEAST -eph1004, 1008PROBABLE PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAB1(1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE KINASE) (PIP5K)(PTDINS(4)P-5-KINASE) (DIPHOSPHOINOSITIDE KINASE)22939371506 (271, 272)Novel Protein sim. GBank gi|493719|dbj|BAA02869| - (D13716) ‘multicopyeph1031suppressor of stt4 mutation (MSS4)’ [Saccharomyces cerevisiae]2308489130 (5273, 5274)Novel Protein sim. GBank gi|729924|sp|P39518|LCF2_YEAST - LONG-eph1020CHAIN-FATTY-ACID - COA LIGASE 2 (LONG-CHAIN ACYL-COASYNTHETASE 2) (FATTY ACID ACTIVATOR 2)23179619722 (7805, 7806)Novel Protein sim. GBank gi|295642 (L13036) - phospholipase CContains protein domainesterase1023[Saccharomyces cerevisiae](PF00388) - Phosphatidytlinositol-specific phospholipase C, Xdomain23220289969 (5309, 5310)Novel Protein sim. GBank gi|1151158 (U43145) - repeat organellar proteinesterase1031[Plasmodium chabaudi]23314999633 (4685, 4686)Novel Protein sim. GBank gi|2619052 (AF027868)—acyl carrier proteinesterase1025phosphodiesterase [Bacillus subtilis]23479863644 (1899, 1900)Novel Protein sim. GBank gi|2895717|emb|CAA04932| - (AJ001694)esterase1010esterase [Thermotoga maritima]23571116588 (7275, 7276)Novel Protein sim. GBank gi|3445486|dbj|BAA32434| - (AB010428) acyl-esterase1020, 1031CoA hydrolase [Rattus norvegicus]23665645802 (5277, 5278)Novel Protein sim. GBank gi|3880999|emb|CAA16386.1| - (AL021492)esterase1038, 1055Y45F10D.11 [Caenorhabditis elegans]23780248787 (5233, 5234)Novel Protein sim. GBank gi|5360854|dbj|BAA82224.1| - (D86934)esterase1004, 1020, 1021, 1022,glycerophosphoryldiester phosphodiesterase [Staphylococcus aureus]102423842942441 (3449, 3450)Novel Protein sim. GBank gi|5689908|emb|CAB52071.1| - (AL109732)esterase1001putative nucleotidase [Streptomyces coellcolor A3(2)]23979579759 (9009, 9010)esterase102024079574436(799, 800)Novel Protein sim. GBank gi|2113986|emb|CAB08991| - (Z95558) hemLContains protein domaingaba1028[Mycobacterium tuberculosis](PF00202) - Aminotransferasesclass-III pyridoxal-phosphate24180029128 (3813, 3814)Novel Protein sim. GBank gi|4007739|emb|CAA22423| - (AL034447)Contains protein domainglucoamylase1008, 1015, 1020, 1022,putative prokaryotic docking protein [Streptomyces coelicolor](PF00448) - SRP54-type protein1024, 103124270949031 (5719, 5720)Novel Protein sim. GBank gi|584839|sp|P05804|BGLR_ECOLI - BETA-glucuronidase1026GLUCURONIDASE (GUS) (BETA-D-GLUCURONOSIDEGLUCURONOSOHYDROLASE)24337815363 (5439, 5440)Novel Protein sim. GBank gi|2315985 (U83139) - mucin [RattusContains protein domainglycoprotein1055norvegicus](PF00007) - Cystine-knot domain24478510710 (2077, 2078)Novel Protein sim. GBank gi|1172451|sp|Q05793|PGBM_MOUSE -Contains protein domainglycoprotein1006BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE(PF00047) - ImmunoglobulinPROTEOGLYCAN CORE PROTEIN PRECURSOR (HSPG) (PERLECAN)domain(PLC)24529443439 (8925, 8926)Novel Protein sim. GBank gi|112881|sp|P02764|A1AG_RAT - ALPHA-1-Contains protein domainglycoprotein1024ACID GLYCOPROTEIN PRECURSOR (OROSOMUCOID) (OMD)(PF00061) - lipocalin24680241641 (3061, 3062)Novel Protein sim. GBank gi|5032197|ref|NP_005718.1|pTSPA -Contains protein domainglycoprotein1003, 1041tetraspan 1; Tspan-1(PF00335) - 4 transmembranesegments integral membraneproteins24778722615 (3757, 3758)Novel Protein sim. GBank gi|28501|pir||S27879 - secretory protein YM-1Contains protein domainglycoprotein1020precursor - mouse(PF00704) - Glycosyl hydrolasesfamily 1824880068413 (5297, 5298)Novel Protein sim. GBank gi|1076802|pir||S49915 - extensin-like protein-glycoprotein1031maize24915001403 (6307, 6308)Novel Protein sim. GBank gi|116918|sp|P12960|CONT_MOUSE -glycoprotein1025CONTACTIN PRECURSOR (NEURAL CELL SURFACE PROTEIN F3)25010344766 (5399, 5400)Novel Protein sim. GBank gi|1169730|sp|P42512|FPTA_PSEAE - FE(III)-glycoprotein1035PYOCHELIN RECEPTOR PRECURSOR25165691921 (1673, 1674)Novel Protein sim. GBank gi|1172555|sp|P42055|POR4_SOLTU - 34 KDglycoprotein1007, 1055OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN (VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN) (VDAC) (POM34)2526419932 (2115, 2116)Novel Protein sim. GBank gi|117437|sp|P08369|CRED_ECOLI - INNERglycoprotein1055MEMBRANE PROTEIN CRED25380098114 (2265,2266)Novel Protein sim. GBank gi|1175955|sp|P43553|ALR2_YEAST -glycoprotein1003,1007,1015, 1023,ALUMINIUM RESISTANCE PROTEIN 2103125479793962 (8399, 8400)Novel Protein sim. GBank gi|1176192|sp|P45420|YHCD_ECOLI -glycoprotein1002, 1021, 1036, 1041,HYPOTHETICAL OUTER MEMBRANE USHER PROTEIN IN GLTF-1055NANT INTERGENIC REGION PRECURSOR25579614536 (1639, 1640)Novel Protein sim. GBank gi|119111|sp|P12978|EBN2_EBV - EBNA-2glycoprotein1021NUCLEAR PROTEIN25628979568 (8159, 8160)Novel Protein sim. GBank gi|121534|sp|P11654|GP21_RAT - INTEGRALglycoprotein1002, 1041MEMBRANE GLYCOPROTEIN GP210 PRECURSOR25729347857 (1099, 1100)Novel Protein sim. GBank gi|123036|sp|P20059|HEMO_RAT -glycoprotein1007HEMOPEXIN PRECURSOR25817942317 (851, 852)Novel Protein sim. GBank gi|124905|sp|P27772|IRGA_VIBCH - IRON-glycoprotein1036REGULATED OUTER MEMBRANE VIRULENCE PROTEINPRECURSOR25920603835 (3013, 3014)Novel Protein sim. GBank gi|1262291 (U51683) - OMP1 precursorglycoprotein1003[Bruceila abortus]26010029936 (8657, 8658)Novel Protein sim. GBank gi|128372|sp|P04846|NLPA_ECOLI -glycoprotein1036LIPOPROTEIN-28 PRECURSOR26187115944 (6453, 6454)Novel Protein sim. GBank gi|129115|sp|P23231|OM70_NEUCR -glycoprotein1023MITOCHONDRIAL PRECURSOR PROTEINS IMPORT RECEPTOR (72 KDMITOCHONDRIAL OUTER MEMBRANE PROTEIN)(MITOCHONDRIAL IMPORT RECEPTOR FOR THE ADP/ATP CARRIER)(TRANSLOCASE OF OUTER MEMBRANE TOM70)26266259299 (7819, 7820)Novel Protein sim. GBank gi|131411|sp|P23853|PSPA_ECOLI - PHAGEglycoprotein1008SHOCK PROTEIN A26380062518 (6119, 6120)Novel Protein sim. GBank gi|1742866|dbj|BAA15547| - (D90819) Innerglycoprotein1008, 1022membrane protein MalK [Escherichia coli]26427824060 (3059, 3060)Novel Protein sim. GBank gi|185498 (M99609) - immunoglobulin heavyglycoprotein1003chain [Homo sapiens]26580049539 (1207, 1208)Novel Protein sim. GBank gi|2408014|emb|CAB16212.1| - (Z99162)glycoprotein1008putative membrane protein [Schizosaccharomyces pombe]26678788165 (2821, 2822)Novel Protein sim. GBank gi|2498489|sp|Q12328|IM22_YEAST -glycoprotein1007MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASESUBUNIT TIM2226779457147 (2021, 2022)Novel Protein sim. GBank gi|2498901|sp|Q53956|SECF_STRCO -glycoprotein1021, 1028, 1051PROTEIN-EXPORT MEMBRANE PROTEIN SECF26813084379 (1575, 1576)Novel Protein sim. GBank gi|2645844 (AF033849) - oprD2-like poringlycoprotein1022precursor [Pseudomonas aeruginosa]26979859532 (41, 42)Novel Protein sim. GBank gi|2695967|emb|CAA15860| - (AL010186)glycoprotein1041mmpL10 [Mycobacterium tuberculosis]27079569245 (5011, 5012)Novel Protein sim. GBank gi|3004655 (AF017777) - waclaw [Drosophilaglycoprotein1031melanogaster]27128856491 (33, 34)Novel Protein sim. GBank gi|3089614 (AF086791) - unknownglycoprotein1024[Zymomonas mobllis]27265900245 (1671, 1672)Novel Protein sim. GBank gi|3283166 (AF057526) - erythrocyteglycoprotein1014, 1015, 1021, 1035,membrane protein Rh50 [Mus musculus]105127311356069 (8367, 8368)Novel Protein sim. GBank gi|3329386 (AF038958) - synaptic glycoproteinglycoprotein1055SC2 spliced variant [Homo sapiens]2744556646 (5729, 5730)Novel Protein sim. GBank gi|3522943|gb|AAC34225.1| - (AC004411)glycoprotein1055putative p-glycoprotein [Arabidopsis thaliana]27566052607 (6817, 6818)Novel Protein sim. GBank gi|3914250|sp|Q51487|OPRM_PSEAE -glycoprotein1008OUTER MEMBRANE PROTEIN OPRM PRECURSOR27679765225 (3775, 3776)Novel Protein sim. GBank gi|3915996|sp|P77196|YFCU_ECOLI -glycoprotein1006, 1015, 1041HYPOTHETICAL OUTER MEMBRANE USHER PROTEIN IN AROC-FADL INTERGENIC REGION PRECURSOR27713076403 (707, 708)Novel Protein sim. GBank gi|399000|sp|P31223|ACRA_ECOLI -glycoprotein1022ACRIFLAVIN RESISTANCE PROTEIN A PRECURSOR27878794717 (1361, 1362)Novel Protein sim. GBank gi|417231|sp|P32486|KRE6_YEAST - BETA-glycoprotein1007GLUCAN SYNTHESIS-ASSOCIATED PROTEIN KRE6 (KILLER TOXIN-RESISTANCE PROTEIN 6)27978470378 (5251, 5252)Novel Protein sim. GBank gi|4467970|emb|CAB37973| - (X76640)glycoprotein1024hypothetical protein [Myxococcus xanthus]28079617709 (3657, 3658)Novel Protein sim. GBank gi|464504|sp|P33221|PURT_ECOLI-glycoprotein1001PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2 (GART2) (GAR TRANSFORMYLASE 2) (5′-PHOSPHORIBOSYLGLYCINAMIDETRANSFORMYLASE 2) (FORMATE-DEPENDENT GARTRANSFORMYLASE)28178965170 (1401, 1402)Novel Protein sim. GBank gi|479628|pir||S34969 - porin E1 -glycoprotein1036Pseudomonas aeruginosa28239539204 (1335, 1336)Novel Protein sim. GBank gi|485956|emb|CAA83635| - (Z32686) mrpCglycoprotein1021, 1041[Proteus mirabilis]28320294672 (4173, 4174)Novel Protein sim. GBank gi|5453178|gb|AAD43467.1|AF11360 -glycoprotein1031(AF113608) UspA1 [Moraxella catarrhalis]28478381117 (993, 994)Novel Protein sim. GBank gi|548514|sp|Q03180|PIR3_YEAST - PIR3glycoprotein1036PROTEIN PRECURSOR (COVALENTLY-LINKED CELL WALL PROTEIN8)28588094402 (6145, 6146)Novel Protein sim. GBank gi|729491|sp|P30130|FIMD_ECOLI - OUTERglycoprotein1004MEMBRANE USHER PROTEIN FIMD PRECURSOR28678368900 (4929, 4930)Novel Protein sim. GBank gi|887638|emb|CAA56302| - (X79979) CDS2glycoprotein1006[Streptomyces griseus]28771766874 (1869, 1870)glycoprotein1021, 103628879627730 (6423, 6424)glycoprotein1023,103528979262445 (2447, 2448)Novel Protein sim. GBank gi|2132124|pir||S67208 - hypothetical proteinContains protein domainhelicase1036YOR304w - yeast (Saccharomyces cerevisiae)(PF00176) - SNF2 and others N-terminal domain29077801272 (2849, 2850)Novel Protein sim. GBank gi|3158516 (AF067617) - contains similarity toContains protein domainhelicase1051chromo (chromatin organization modifier) domains (Pfam: chromo.hmm.(PF00176) - SNF2 and others N-score: 17.76 and 27.94) and to helicases conserved C-terminal domainterminal domain(Pfam: helicase_C.hmm, score: 67.00) [Caenorhabditis elegans]29179179202 (8791, 8792)Novel Protein sim. GBank gi|1172894|sp|P43809|RECG_HAEIN - ATP-Contains protein domainhelicase1025DEPENDENT DNA HELICASE RECG(PF00270) - DEAD/DEAH boxhelicase29220465793 (7775, 7776)Novel Protein sim. GBank gi|1351656|sp|Q09903|YAJ3_SCHPO -Contains protein domainhelicase1008PUTATIVE ATP-DEPENDENT RNA HELICASE C30D11.03(PF00270) - DEAD/DEAH boxhelicase29330265520 (7737, 7738)Novel Protein sim. GBank gi|4579744|dbj|BAA75085.1| - (AB017104)Contains protein domainhelicase1024DNA helicase Q1 [Mus musculus](PF00270) - DEAD/DEAH boxhelicase29480045298 (2723, 2724)Novel Protein sim. GBank gi|5042262|emb|CAB44516.1| - (AL078618)Contains protein domainhelicase1008putative helicase [Streptomyces coelicolor](PF00270) - DEAD/DEAH boxhelicase29578674774 (4129, 4130)Novel Protein sim. GBank gi|731740|sp|P38719|DBP8_YEAST -Contains protein domainhelicase1007PROBABLE ATP-DEPENDENT RNA HELICASE DBP8(PF00270) - DEAD/DEAH boxhelicase29628489738 (7945, 7946)Novel Protein sim. GBank gi|118411|sp|P06634|DED1_YEAST -Contains protein domainhelicase1006, 1020PUTATIVE ATP-DEPENDENT RNA HELICASE DED1(PF00271) - Helicases conservedC-terminal domain29727370970 (1179, 1180)Novel Protein sim. GBank gi|4454799|gb|AAD20980| - (AF079782)Contains protein domainhelicase1001, 1007translation initiation factor 4A2 [Zea mays](PF00271) - Helicases conservedC-terminal domain2988518066 (4179, 4180)Novel Protein sim. GBank gi|2625021 (AF028736) - DNA helicase IIContains protein domainhelicase1020[Serratia marcescens](PF00430) - ATP synthase B/B'CF(0)29986462670 (7079, 7080)Novel Protein sim. GBank gi|1084084|pir||S55811 - hrpA protein -helicase1023Escherichia coli30021437178 (7027, 7028)Novel Protein sim. GBank gi|130804|sp|P20095|PR02_YEAST - PRE-helicase1020MRNA SPLICING FACTOR RNA HELICASE PRP230194657426 (7855, 7856)Novel Protein sim. GBank gi|130830|sp|P24384|PR22_YEAST - PRE-helicase1031MRNA SPLICING FACTOR RNA HELICASE PRP2230252561605 (8625, 8626)Novel Protein sim. Gbank gi|132252|sp|P24230|RECG_ECOLI - ATP-helicase1002DEPENDENT DNA HELICASE RECG30380062482 (7, 8)Novel Protein sim. GBank gi|134124|sp|P08577|RUVB_ECOLI -helicase1008HOLLIDAY JUNCTION DNA HELICASE RUVB30480062519 (6217, 6218)Novel Protein sim. GBank gi|1718065|sp|P53528|UVRD_MYCLE -helicase1008, 1015, 1023, 1025,PUTATIVE DNA HELICASE II HOMOLOG102830519874303 (3989, 3990)Novel Protein sim. GBank gi|172270 (M31524) - PRP16 peptide (put.helicase1020helicase): putative [Saccharomyces cerevisiae]30678488722 (3263, 3264)Novel Protein sim. GBank gi|1742299|dbj|BAA15025| - (D90779) ATP-helicase1007dependent helicase HrpA homolog. [Escherichia coli]30713883890 (7339, 7340)Novel Protein sim. GBank gi|2314653|gb|AAD08516.1| - (AE000647) DNAhelicase1050helicase II (uvrD) [Helicobacter pylori 26695]30813886313 (7791, 7792)Novel Protein sim. GBank gi|3121983|sp|O25916|DNAB_HELPY -helicase1050REPLICATIVE DNA HELICASE30978372173 (5241, 5242)Novel Protein sim. GBank gi|3158516 (AF067617) - contains similarity tohelicase1041chromo (chromatin organization modifier) domains (Pfam: chromo.hmm.score: 17.76 and 27.94) and to helicases conserved C-terminal domain(Pfam: helicase_C.hmm, score: 67.00) [Caenorhabditis elegans]31019464841 (3699, 3700)Novel Protein sim. GBank gi|3249557 (AF010185) - DNA helicase II UvrDhelicase1021[Pseudomonas aeruginosa]31180256570 (6075, 6076)Novel Protein sim. GBank gi|4007725|emb|CAA22409| - (AL034447)helicase1004putative ATP-dependent DNA helicase [Streptomyces coellcolor]31232745469 (6609, 6610)Novel Protein sim. GBank gi|407992 (L25125) - RNA helicase [Mushelicase1001musculus]31385818219 (6929, 6930)Novel Protein sim. GBank gi|4104820|gb|AAD02177.1| - (AF040045)helicase1017DEAD box RNA helicase homolog [Anabaena variabilis]31478459902 (1355, 1356)Novel Protein sim. GBank gi|416592|sp|P32323|AGA1_YEAST - A-helicase1024AGGLUTININ ATTACHMENT SUBUNIT PRECURSOR31582362354 (4511, 4512)Novel Protein sim. GBank gi|417308|sp|P32333|MOT1_YEAST -helicase1001, 1002, 1003, 1004,PROBABLE HELICASE MOT11006, 1007, 1008, 1010,1015, 1020, 1021, 1022,1024, 1031, 1036, 1041,1047, 105131665503301 (6055, 6056)Novel Protein sim. GBank gi|4455689|emb|CAB36663| - (AL035500)helicase1046probable ATP-dependent DNA helicase [Mycobacterium leprae]31728489378 (7043, 7044)Novel Protein sim. GBank gi|5102733|emb|CAB45191.1| - (AL079292)hellcase1024hypothetical protein, similar to (AC007017) putative RNA helicase A[Arabidopsis thaliana] [Homo sapiens]31810236105 (1505, 1506)Novel Protein sim. GBank gi|548730|sp|P25888|RHLE_ECOLI -helicase1036PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE31923285347 (4343, 4344)Novel Protein sim. GBank gi|5689893|emb|CAB52056.1| - (AL109732)helicase1024putative ATP-bindlng RNA helicase [Streptomyces coelicolor A3(2)]3208492058 (6697, 6698)Novel Protein sim. GBank gi|586550|sp|P38112|MAK5_YEAST - ATP-helicase1020DEPENDENT RNA HELICASE MAK532180216307 (1237, 1238)Novel Protein sim. GBank gi|731738|sp|P38859|DNA2_YEAST - DNAhelicase1002, 1003, 1004, 1015,REPLICATION HELICASE DNA21020, 1022, 1031, 103632221428417 (6511, 6512)Novel Protein sim. GBank gi|95749|pir||S12698 - probable RNA helicase -helicase1004Escherichia coli32325267355 (2597, 2598)Novel Protein sim. GBank gi|4240299|dbj|BAA74928.1| - (AB020712)Contains protein domainhistone1002KIAA0905 protein [Homo sapiens](PF00400) - WD domain, G-betarepeat32478781427 (7147, 7148)Novel Protein sim. GBank gi|1710013|sp|P01119|RAS1_YEAST - RAS-histone1020LIKE PROTEIN 132595292938 (149, 150)Novel Protein sim. GBank gi|2984320 (AE000773) - acetoin utilizationhistone1008, 1022, 1031protein [Aquifex aeolicus]32680258853 (2643, 2644)Novel Protein sim. GBank gi|3023317|sp|Q48935|APHA_MYCRA -histone1004ACETYLPOLYAMINE AMINOHYDROLASE32730190917 (299, 300)Novel Protein sim. GBank gi|417103|sp|P11105|H32_MEDSA - HISTONEhistone1007H3.2, MINOR32880223141 (5477, 5478)Novel Protein sim. GBank gi|728956|sp|P35817|BDF1_YEAST - BDF1Contains protein domainhomeobox1003, 1004, 1020, 1031PROTEIN(PF00439) - Bromodomain32911691396 (6919, 6920)Novel Protein sim. GBank gi|127089|sp|P25336|MSH3_YEAST - MUTSContains protein domainhomeobox1031PROTEIN HOMOLOG 3 (MISMATCH BINDING PROTEIN) (MBP)(PF00488) - DNA mismatch repairproteins, mutS family33036756499 (2805, 2806)Novel Protein sim. GBank gi|2494503|sp|Q63244|HFH1_RAT -homeobox1021, 1031HEPATOCYTE NUCLEAR FACTOR 3 FORKHEAD HOMOLOG 1 (HFH-1)33179178980 (1959, 1960)Novel Protein sim. GBank gi|547726|sp|P35640|INVA_BARBA -Contains protein domainhydrolase1025INVASION PROTEIN A(PF00293) - Bacterial mutTprotein33230578333 (7005, 7006)Novel Protein sim. GBank gi|2880049 (AC002340) - hypothetical proteinContains protein domainhydrolase1024[Arabidopsis thaliana](PF01662) - Cytosolic long-chainacyl-CoA thioester hydrolase33378477734 (5577, 5578)Novel Protein sim. GBank gi|1130507 (L41670) - fumarylacetoacetatehydrolase1002hydrolase [Emericella nidulans]33486475776 (7507, 7508)Novel Protein sim. GBank gi|115890|sp|P06621|CBPG_PSES6 -hydrolase1045CARBOXYPEPTIDASE G2 PRECURSOR (FOLATE HYDROLASE G2)(PTEROYLMONOGLUTAMIC ACID HYDROLASE G2) (GLUTAMATECARBOXYPEPTIDASE)33586693482 (127, 128)Novel Protein sim. GBank gi|1169528|sp|P42895|ENO2_MAIZE -hydrolase1005ENOLASE 2 (2-PHOSPHOGLYCERATE DEHYDRATASE 2) (2-PHOSPHO-D-GLYCERATE HYDRO-LYASE 2)33614999668 (6275, 6276)Novel Protein sim. GBank gi|1169528|sp|P42895|ENO2_MAIZE -hydrolase1025ENOLASE 2 (2-PHOSPHOGLYCERATE DEHYDRATASE 2) (2-PHOSPHO-D-GLYCERATE HYDRO-LYASE 2)33779824931 (463, 464)Novel Protein sim. GBank gi|1175303|sp|P44049|MLTC_HAEIN -hydrolase1006, 1020, 1041MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE CPRECURSOR (MUREIN HYDROLASE C)33879565170 (5587, 5588)Novel Protein sim. GBank gi|1175620|sp|P42241|YCBI_BACSU -hydrolase1021HYPOTHETICAL 32.4 KD PROTEIN IN PCP 5′REGION (ORF8)33980218214 (183, 184)Novel Protein sim. GBank gi|1708850|sp|Q10740|LKHA_YEAST -hydrolase1003, 1004, 1020, 1023,PROBABLE LEUKOTRIENE A-4 HYDROLASE (LTA-4 HYDROLASE)1028(LEUKOTRIENE A(4) HYDROLASE)34027956251 (2771, 2772)Novel Protein sim. GBank gi|1754515|dbj|BAA13413.1| - (D87515)hydrolase1003aminopeptidase-B [Rattus norvegicus]34117022381 (7037, 7038)Novel Protein sim. GBank gi|2118299|pir||S67305 - ERR1 protein - yeasthydrolase1021(Saccharomyces cerevisiae)34256324337 (15, 16)Novel Protein sim. GBank gi|2143818|pir||S59898 - kynureninase (EChydrolase10243.7.1.3) - rat34378934465 (3801, 3802)Novel Protein sim. GBank gi|216807|dbj|BAA01524| - (D10678) 6-hydrolase1015aminohexanoate-dimer hydrolase [Pseudomonas sp.]34419886695 (363, 364)Novel Protein sim. GBank gi|2842689|sp|Q92342|YDI4_SCHPO -hydrolase1031HYPOTHETICAL 50.4 KD PROTEIN C1F8.04C IN CHROMOSOME I34579557816 (3231, 3232)Novel Protein sim. GBank gi|4467250|emb|CAB37575| - (AL035569)hydrolase1004, 1006, 1015, 1022probable Glu-tRNA Gln amidotransferase subunit [Streptomycescoelicolor]34629208398 (4199, 4200)Novel Protein sim. GBank gi|4503585|ref|NP_001970.1|pEPHX - epoxidehydrolase1015hydrolase 2, cytoplasmic34780258207 (51, 52)Novel Protein sim. GBank gi|4753869|emb|CAB42032.1| - (AL049754)hydrolase1004putative hydrolase [Streptomyces coelicolor]34817881519 (3397, 3398)Novel Protein sim. GBank gi|5545316|dbj|BAA82531.1| - (AB030032)hydrolase1036putative transglycosylase [Actinobacillus actinomycetemcomitans]34925151365 (6343, 6344)Novel Protein sim. GBank gi|5545316|dbj|BAA82531.1| - (AB030032)hydrolase1007putative transglycosylase [Actinobacillus actinomycetemcomitans]35017936810 (3529, 3530)Novel Protein sim. GBank gi|731088|sp|P24215|UXUA_ECOLI -hydrolase1035MANNONATE DEHYDRATASE (D-MANNONATE HYDROLASE)3517415018 (1947, 1948)Novel Protein sim. GBank gi|80437|pir||S18811 - urocanate hydratasehydrolase1055(EC 4.2.1.49) - Bacillus subtills (fragment)35255506625 (6841, 6842)Novel Protein sim. GBank gi|4512301|dbj|BAA75048.1| - (AB019440)Contains protein domainimmunoglob1019immunogloblin heavy chain variable region [Homo sapiens](PF00047) - Immunoglobulindomain35380216144 (1887, 1888)Novel Protein sim. GBank gi|619440 (M94115) - This CDS feature isContains protein domainimmunoglob1022included to show the translation of the corresponding V_region. Presently(PF00047) - Immunoglobulintranslation qualifiers on V_region features are illegal. [Homo sapiens]domain35410311869 (5331, 5332)Novel Protein sim. GBank gi|3046410 (AF044419) - anti-Rh(D) antibodyimmunoglob1023VH segment [synthetic construct]35520405293 (4415, 4416)Novel Protein sim. GBank gi|346088|pir||PH1282 - Ig heavy chain Vimmunoglob1022region (clone PBL13) - human (fragment)35680047082 (1441, 1442)Novel Protein sim. GBank gi|481342|pir||S38489 - Ig heavy chain - humanimmunoglob1022(fragment)35794325418 (745, 746)Novel Protein sim. GBank gi|4837863|gb|AAD30723.1| - (AF103163)immunoglob1041immunoglobulin heavy chain variable region [Homo sapiens]35880047715 (6499, 6500)Novel Protein sim. GBank gi|3885336 (AC005623) - receptor-like proteinContains protein domaininterleukinrecept1002, 1020kinase [Arabidopsis thaliana](PF00069) - Eukaryotic proteinkinase domain35980059851 (6101, 6102)Novel Protein sim. GBank gi|4557753|ref|NP_000372.1|pMID1 - midline 1Contains protein domaininterleukinrecept1001, 1020protein(PF00097) - Zinc finger, C3HC4type (RING finger)36080218527 (995, 996)Novel Protein sim. GBank gi|416977|sp|P32474|EUG1_YEAST -Contains protein domainisomerase1003, 1004, 1006, 1020,ENDOPLASMIC RETICULUM PROTEIN EUG1 PRECURSOR(PF00085) - Thioredoxin1022, 1031, 1041(POSSIBLE PROTEIN DISULFIDE ISOMERASE (PDI))36156013085 (4183, 4184)Novel Protein sim. GBank gi|456013 (L28174) - disulfide-like proteinContains protein domainisomerase1050[Acanthamoeba castellanli](PF00085) - Thioredoxin36278025291 (8709, 8710)Novel Protein sim. GBank gi|1351280|sp|P48500|TPIS_RAT -Contains protein domainisomerase1006TRIOSEPHOSPHATE ISOMERASE (TIM)(PF00121) - Triosephosphateisomerase36366050272 (4971, 4972)Novel Protein sim. GBank gi|1730003|sp|P50920|TPIS_MYCHY -Contains protein domainisomerase1005TRIOSEPHOSPHATE ISOMERASE (TIM)(PF00121) - Triosephosphateisomerase36411777004 (8235, 8236)Novel Protein sim. GBank gi|1490397|emb|CAA91553| - (Z67740) DNAContains protein domainisomerase1020gyrase [Streptococcus pneumoniae](PF00204) - DNA topoisomeraseII (N-terminal region)36587461104 (5413, 5414)Novel Protein sim. GBank gi|4468641|emb|CAB38179| - (Y16286) gyrBContains protein domainisomerase1023[Pseudomonas aeruginosa](PF00204) - DNA topoisomeraseII (N-terminal region)36686477775 (6527, 6528)Novel Protein sim. GBank gi|1652134|dbj|BAA17058| - (D90903) FKBP-Contains protein domainisomerase1017type peptidyl-prolyl cis-trans isomerase [Synechocystis sp.](PF00254) - FKBP-type peptidyl-prolyl cis-trans isomerases36710355882 (541, 542)Novel Protein sim. GBank gi|478318|pir||JN0873 - immunophilin p59 -Contains protein domainisomerase1036mouse(PF00254) - FKBP-type peptidyl-prolyl cis-trans isomerases36879872191 (5327, 5328)Novel Protein sim. GBank gi|239790|bbs|68264 - (S68257) D-xyluloseContains protein domainisomerase1015keto-isomerase, D-glucose isomerase, D-xylose isomerase (EC 5.3.1.5)(PF00259) - Xylose isomerase[Escherichia coli, Peptide, 440 aa] [Escherichia coli]36980105757 (4213, 4214)Novel Protein sim. GBank gi|113158|sp|P25516|ACO1_ECOLI -Contains protein domainisomerase1011ACONITATE HYDRATASE 1 (CITRATE HYDRO-LYASE 1) (ACONITASE(PF00330) - Aconitase family1)(aconitate hydratase)37032164388 (2025, 2026)Novel Protein sim. GBank gi|1786259 (AE000117) - 3-isopropylmalateContains protein domainisomerase1021isomerase (dehydratase) subunit [Escherichia coli](PF00330) - Aconitase family(aconitate hydratase)37178980291 (8967, 8968)Novel Protein sim. GBank gi|4406814|gb|AAD20122| - (AC006201)Contains protein domainisomerase1002putative peptidyl-prolyl isomerase [Arabidopsis thaliana](PF00639) - PPIC-type PPIASEdomain.37265327341 (2415, 2416)Novel Protein sim. GBank gi|400187|sp|Q02144|LEUD_LACLA - 3-Contains protein domainisomerase1020ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT(PF00694) - Aconitase C-terminal(ISOPROPYLMALATE ISOMERASE) (ALPHA-IPM ISOMERASE)domain37316388095 (2969, 2970)Novel Protein sim. GBank gi|2126788|pir||I40190 - DNA topoisomerase I -Contains protein domainisomerase1002Bacillus firmus (fragment)(PF01131) - Prokaryotic DNAtopoisomerase37480491857 (3457, 3458)Novel Protein sim. GBank gi|1174735|sp|P43012|TOP1_HAEIN - DNAContains protein domainisomerase1010TOPOISOMERASE I (OMEGA-PROTEIN) (RELAXING ENZYME)(PF01398) - Topoisomerase DNA(UNTWISTING ENZYME) (SWIVELASE)binding C4 zinc finger37579316780 (887, 888)Novel Protein sim. GBank gi|114100|sp|P08203|ARAD_ECOLI - L-isomerase1004, 1020RIBULOSE-5-PHOSPHATE 4-EPIMERASE37679312879 (6797, 6798)Novel Protein sim. GBank gi|116841|sp|P21640|COBJ_PSEDE -isomerase1008PRECORRIN-3B C17-METHYLTRANSFERASE (PRECORRIN-3METHYLTRANSFERASE) (PRECORRIN-3 METHYLASE)37779193215 (7677, 7678)Novel Protein sim. GBank gi|1169225|sp|P44859|DAPF_HAEIN -isomerase1022DIAMINOPIMELATE EPIMERASE37890936817 (25, 26)Novel Protein sim. GBank gi|119120|sp|P07896|ECHP_RAT - ENOYL-isomerase1018COA HYDRATASE/3,2-TRANS-ENOYL-COA ISOMERASE/3-HYDROXYACYL-COA DEHYDROGENASE , PEROXISOMAL(PEROXISOMAL BIFUNCTONAL ENZYME) (PBE) (PBFE)37979244172 (7479, 7480)Novel Protein sim. GBank gi|1353104|sp|P48561|TRF5_YEAST -isomerase1006TOPOISOMERASE 1-RELATED PROTEIN TRF538080429067 (8217, 8218)Novel Protein sim. GBank gi|1706568|sp|Q10533|ECHH_MYCTU -isomerase1000, 1004, 1008, 1010,PUTATIVE ENOYL-COA HYDRATASE103538120385447 (3541, 3542)Novel Protein sim. GBank gi|1706702|sp|P52641|EPSC_BURSO -isomerase1003PUTATIVE UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE (UDP-GLCNAC-2-EPIMERASE)38280481824 (377, 378)Novel Protein sim. GBank gi|1929095|emb|CAA72944| - (Y12268) DapFisomerase1010protein [Pseudomonas fluorescens]38333202071 (3873, 3874)Novel Protein sim. GBank gi|2231748 (U92221) - macrophage infectivityisomerase1024potentiator [Legionella shakespearei]38478907625 (2455, 2456)Novel Protein sim. GBank gi2494040|sp|Q51564|DAPF_PSEAE -isomerase1036DIAMINOPIMELATE EPIMERASE38554992976 (1259, 1260)Novel Protein sim. GBank gi|2501240|sp|Q59567|TOP1_MYCTU - DNAisomerase1026TOPOISOMERASE I (OMEGA-PROTEIN) (RELAXING ENZYME)(UNTWISTING ENZYME) (SWIVELASE)38682450231 (8827, 8828)Novel Protein sim. GBank gi|2621713 (AE000844) - UDP-glucose 4-isomerase1001, 1003, 1004, 1008,epimerase [Methanobacterium thermoautotrophicum]1010, 1020, 1021, 103138716837298 (1907, 1908)Novel Protein sim. GBank gi|2739168 (AF032386) - aldose-1-epimerase-isomerase1021like protein [Nicotiana tabacum]38810187377 (6783, 6784)Novel Protein sim. GBank gi|3309243 (AF073507) - aconitase-ironisomerase1002regulated protein 1 [Citrus limon]38980215263 (7477, 7478)Novel Protein sim. GBank gi|4502327|ref|NP_001689.1|pAUH| - AU RNA-isomerase1002, 1008, 1024binding protein/enoyl-Coenzyme A hydratase precursor39078792960 (7867, 7868)Novel Protein sim. GBank gi|4520378|dbj|BAA75914.1| - (AB024602)isomerase1020NIFS-like protein [Pseudomonas putida]39117087020 (2905, 2906)Novel Protein sim. GBank gi|728783|sp|P39533|ACOX_YEAST -isomerase1036PUTATIVE ACONITASE IN PRP21-UBP12 INTERGENIC REGION39279864827 (1301, 1302)Novel Protein sim. GBank gi|1170625|sp|P27466|KCC1_YEAST -Contains protein domainkinase1015, 1022, 1035, 1036CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE I(PF00069) - Eukaryotic proteinkinase domain39378781757 (5949, 5950)Novel Protein sim. GBank gi|1170714|sp|P43289|KSGG_ARATH -Contains protein domainkinase1006SHAGGY RELATED PROTEIN KINASE ASK-GAMMA(PF00069) - Eukaryotic proteinkinase domain39482136936 (5067, 5068)Novel Protein sim. GBank gi|1173459|sp|P41808|SMK1_YEAST -Contains protein domainkinase1014SPORULATION-SPECIFIC MITOGEN-ACTIVATED PROTEIN KINASE(PF00069) - Eukaryotic proteinSMK1 (MAP KINASE SMK1)kinase domain39516383607 (5269, 5270)Novel Protein sim. GBank gi|125288|sp|P15791|KCCD_RAT -Contains protein domainkinase1015CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II(PF00069) - Eukaryotic proteinDELTA CHAIN (CAM-KINASE II DELTA CHAIN) (CAMK-II, DELTAkinase domainSUBUNIT)39656660366 (2363, 2364)Novel Protein sim. GBank gi|2062399 (U78857) - protein serine/threonineContains protein domainkinase1037, 1039kinase CPG16 [Rattus norvegicus](PF00069) - Eukaryotic proteinkinase domain39713089154 (6433, 6434)Novel Protein sim. GBank gi|2078052|emb|CAB08487.1| - (Z95209) pknDContains protein domainkinase1025[Mycobacterium tuberculosis](PF00069) - Eukaryotic proteinkinase domain39879601611 (3255, 3256)Novel Protein sim. GBank gi|2131510|pir||S69634 - hypothetical proteinContains protein domainkinase1004YDR466w - yeast (Saccharomyces cerevisiae)(PF00069) - Eukaryotic proteinkinase domain39979817329 (5083, 5084)Novel Protein sim. GBank gi|2392895 (AF017056) - brassinosteroidContains protein domainkinase1036insensitive 1 [Arabidopsis thaliana](PF00069) - Eukaryotic proteinkinase domain40065691019 (367, 368)Novel Protein sim. GBank gi|2781357 (AC003113) - F24O1.13Contains protein domainkinase1007[Arabidopsis thaliana](PF00069) - Eukaryotic proteinkinase domain40179250602 (9037, 9038)Novel Protein sim. GBank gi|3522961|gb|AAC34243.1| - (AC004411)Contains protein domainkinase1036putative pto kinase [Arabidopsis thaliana](PF00069) - Eukaryotic proteinkinase domain40220432709 (8947, 8948)Novel Protein sim. GBank gi|3522970 (U42390) - Trio [Homo sapiens]Contains protein domainkinase1020(PF00069) - Eukaryotic proteinkinase domain40329510031 (6243, 6244)Novel Protein sim. GBank gi|3600036 (AF080119) - contains similarity toContains protein domainkinase1006protein kinase domains (Pfam: pkinase.hmm, score: 227.04) [Arabidopsis(PF00069) - Eukaryotic proteinthaliana]kinase domain40495414355 (2403, 2404)Novel Protein sim. GBank gi|4210753|emb|CAA10713| - (AJ132604)Contains protein domainkinase1020, 1022, 1040, 1055hypothetical protein [Lactococcus lactis](PF00069) - Eukaryotic proteinkinase domain40578825843 (7951, 7952)Novel Protein sim. GBank gi|4467134|emb|CAB37503| - (AL035540)Contains protein domainkinase1015protein kinase like protein [Arabidopsis thaliana](PF00069) - Eukaryotic proteinkinase domain40637001545 (7189, 7190)Novel Protein sim. GBank gi|4490638|emb|CAA92266.2| - (Z68144)Contains protein domainkinase1001serine/threonine protein kinase [Schizosaccharomyces pombe](PF00069) - Eukaryotic proteinkinase domain40765891548 (6585, 6586)Novel Protein sim. GBank gi|4506537|ref|NP_003812.1|pRIP2 -Contains protein domainkinase1035UNKNOWN(PF00069) - Eukaryotic proteinkinase domain40829221338 (6491, 6492)Novel Protein sim. GBank gi|4512667|gb|AAD21721.1| - (AC006931)Contains protein domainkinase1027putative MAP kinase [Arabidopsis thaliana](PF00069) - Eukaryotic proteinkinase domain40925258544 (2657, 2658)Novel Protein sim. GBank gi|4539601|emb|CAB40012.1| - (AL049522)Contains protein domainkinase1006serine/threonine-protein kinase [Schizosaccharomyces pombe](PF00069) - Eukaryotic proteinkinase domain41030661640 (867, 868)Novel Protein sim. GBank gi|465483|sp|P33886|WIS1_SCHPO -Contains protein domainkinase1020PROTEIN KINASE WIS1(PF00069) - Eukaryotic proteinkinase domain41178960407 (4385, 4386)Novel Protein sim. GBank gi|547785|sp|P36003|KKR1_YEAST -Contains protein domainkinase1002PROBABLE SERINE/THREONINE-PROTEIN KINASE YKL171W(PF00069) - Eukaryotic proteinkinase domain41229685105 (349, 350)Novel Protein sim. GBank gi|585793|sp|P38622|RCK1_YEAST -Contains protein domainkinase1007SERINE/THREONINE-PROTEIN KINASE RCK1(PF00069) - Eukaryotic proteinkinase domain41387454473 (375, 376)Novel Protein sim. GBank gi|3935168 (AC004557) - F17L21.11Contains protein domainkinase1023[Arabidopsis thaliana](PF00072) - Response regulatorreceiver domain41480470074 (7573, 7574)Novel Protein sim. GBank gi|4468682|emb|CAB38136.1| - (AL035591)Contains protein domainkinase1003, 1004, 1008, 1010,phosphoglycerate kinase [Streptomyces coelicolor](PF00162) - Phosphoglycerate1022, 1031kinases41577901754 (123, 124)Novel Protein sim. GBank gi|2661698|emb|CAA15802| - (AL009204)Contains protein domainkinase1008, 1037putative thimidine kinase [Streptomyces coelicolor](PF00265) - Thymidine kinases41616394057 (5823, 5824)Novel Protein sim. GBank gi|125390|sp|P07128|KHSE_BRELA -Contains protein domainkinase1021HOMOSERINE KINASE (HK)(PF00288) - GHMP kinasesputative ATP-binding proteins41739537520 (293, 294)Novel Protein sim. GBank gi|1073282|pir||C55215 - 2-dehydro-3-Contains protein domainkinase1006deoxygluconokinase (EC 2.7.1.45) - Erwinla chrysanthemi(PF00294) - pfkB familycarbohydrate kinase41836738408 (7691, 7692)Novel Protein sim. GBank gi|2127192|pir||40463 - ribokinase (ECContains protein domainkinase10312.7.1.15) - Bacillus subtilis(PF00294) - pfkB familycarbohydrate kinase41971088701 (6033, 6034)Contains protein domainkinase1050(PF00294) - pfkB familycarbohydrate kinase42080218550 (6387, 6388)Novel Protein sim. GBank gi|548341|sp|P36010|NDK_YEAST -Contains protein domainkinase1002, 1004, 1006, 1007,NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)(PF00334) - Nucleoside1015, 1020, 1024diphosphate kinases42125260297(6719, 6720)Novel Protein sim. GBank gi|171735 (M11181) - hexokinase P-II peptideContains protein domainkinase1006[Saccharomyces cerevisiae](PF00349) - Hexokinase42229445916 (6313, 6314)Novel Protein sim. GBank gi|125121|sp|P16861|K6P1_YEAST - 6-Contains protein domainkinase1020PHOSPHOFRUCTOKINASE ALPHA SUBUNIT(PF00365) - Phosphofructokinase(PHOSPHOFRUCTOKINASE 1) (PHOSPHOHEXOKINASE) (6PF-1-KALPHA SUBUNIT)42380248665 (1687, 1688)Novel Protein sim. GBank gi|3122305|sp|Q27778|K6PF_SCHMA - 6-Contains protein domainkinase1004, 1020, 1023PHOSPHOFRUCTOKINASE (PHOSPHOFRUCTOKINASE)(PF00365) - Phosphofructokinase(PHOSPHOHEXOKINASE)42425259137 (7451, 7452)Novel Protein sim. GBank gi|3122594|sp|Q59126|PFP_AMYME -Contains protein domainkinase1021PYROPHOSPHATE-FRUCTOSE 6-PHOSPHATE 1-(PF00365) - PhosphofructokinasePHOSPHOTRANSFERASE (6-PHOSPHOFRUCTOKINASE(PYROPHOSPHATE)) (PYROPHOSPHATE-DEPENDENT 6-PHOSPHOFRUCTOSE-1-KINASE) (PPI-PFK)42582060206 (6711, 6712)Novel Protein sim. GBank gi|2960120|emb|CAA18018.1| - (AL022121)Contains protein domainkinase1001, 1003, 1004, 1007,glpK [Mycobacterium tuberculosis](PF00370) - FGGY family of1008, 1010, 1014, 1020,carbohydrate kinases1021, 1022, 1024, 1025,103542680249154 (7825, 7826)Novel Protein sim. GBank gi|3122139|sp|Q63060|GLPK_RAT -Contains protein domainkinase1004GLYCEROL KINASE (ATP: GLYCEROL 3-PHOSPHOTRANSFERASE)(PF00370) - FGGY family of(GLYCEROKINASE) (GK) (ATP-STIMULATED GLUCOCORTICOID-carbohydrate kinasesRECEPTOR TRANSLOCATON PROMOTER) (ASTP)42780055278 (653, 654)Novel Protein sim. GBank gi|3358091|dbj|BAA31995| - (AB015974)Contains protein domainkinase1020, 1022glycerol kinase [Pseudomonas tolaasil](PF00370) - FGGY family ofcarbohydrate kinases42880047548 (7383, 7384)Novel Protein sim. GBank gi|4204896 (U57100) - erythritol kinaseContains protein domainkinase1003, 1015[Brucella abortus](PF00370) - FGGY family ofcarbohydrate kinases42978769251 (7003, 7004)Novel Protein sim. GBank gi|4980782|gb|AAD35372.1|AE00171 -Contains protein domainkinase1015(AE001710) sugar kinase, FGGY family [Thermotoga maritima](PF00370) - FGGY family ofcarbohydrate kinases43079611230 (4121, 4122)Novel Protein sim. GBank gi|1077378|pir||S51445 - probable membraneContains protein domainkinase1004protein YLR222c - yeast (Saccharomyces cerevisiae)(PF00400) - WD domain, G-betarepeat43180081455 (7721, 7722)Novel Protein sim. GBank gi|2497146|sp|Q04305|YMY3_YEAST -Contains protein domainkinase1003, 1020HYPOTHETICAL 57.7 KD PROTEIN IN AIP1-CTF13 INTERGENIC(PF00400) - WD domain, G-betaREGIONrepeat43256010654 (8637, 8638)Novel Protein sim. GBank gi|1170646|sp|P43565|RI15_YEAST -Contains protein domainkinase1041SERINE/THREONINE-PROTEIN KINASE RIM15(PF00433) - Protein kinase Cterminal domain43325246073 (7699, 7700)Novel Protein sim. GBank gi|5031439|gb|AAD38172.1|AF15259 -Contains protein domainkinase1041(AF152598) TadA [Actinobacillus actinomycetemcomitans](PF00437) - Bacterial type IIsecretion system protein43485533226 (7263, 7264)Novel Protein sim. GBank gi|4982035|gb|AAD36537.1|AE00179 -Contains protein domainkinase1024, 1046(AE001798) glucokinase [Thermotoga maritima](PF00480) - ROK family43594845347 (7933, 7934)Novel Protein sim. GBank gi|4455704|emb|CAB36689| - (AL035500)Contains protein domainkinase1024, 1027, 1041, 1046putative two-component system sensor [Mycobacterium leprae](PF00512) - Histidine kinase43678796199 (4913, 4914)Novel Protein sim. GBank gi|1077386|pir||S51348 - hypothetical proteinkinase1024YLR345w - yeast (Saccharomyces cerevisiae)43711072203 (5567, 5568)Novel Protein sim. GBank gi|113559|sp|P10869|AK_YEAST -kinase1031ASPARTOKINASE (ASPARTATE KINASE)43880219067 (7127, 7128)Novel Protein sim. GBank gi|1169289|sp|P43550|DHAK_YEAST -kinase1003, 1004, 1015, 1022DIHYDROXYACETONE KINASE 2 (GLYCERONE KINASE)43910174239 (2089, 2090)Novel Protein sim. GBank gi|1176152|sp|P44507|YHAD_HAEIN -kinase1003HYPOTHETICAL PROTEIN HI009144085811009 (5659, 5660)Novel Protein sim. GBank gi|140977|sp|P18961|YPK2_YEAST -kinase1017SERINE/THREONINE-PROTEIN KINASE YPK2/YKR24419061533 (3861, 3862)Novel Protein sim. GBank gi|146923 (M24910) - nitrogenase reductasekinase1004[Escherichia coli]44215023387 (5237, 5238)Novel Protein sim. GBank gi|1480174 (U56773) - pelle-like protein kinasekinase1001, 1022[Mus musculus]44347660080 (4719, 4720)Novel Protein sim. GBank gi|1651932|dbj|BAA16858| - (D90901) nitrogenkinase1026fixation positive activator protein [Synechocystis sp.]44488095282 (6513, 6514)Novel Protein sim. GBank gi|1652968|dbj|BAA17885| - (D90910) sensorykinase1031transduction histidine kinase [Synechocystis sp.]44579570150 (3697, 3698)Novel Protein sim. GBank gi|1653309|dbj|BAA18224| - (D90912)kinase1015regulatory components of sensory transduction system [Synechocystissp.]44679565494 (5593, 5594)Novel Protein sim. GBank gi|1709963|sp|Q10791|PYRH_MYCTU -kinase1015URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHATE KINASE)(UMP KINASE)44737802513 (1095, 1096)Novel Protein sim. GBank gi|1711416|sp|P53351|SNK_MOUSE -kinase1055SERINE/THREONINE-PROTEIN KINASE SNK (SERUM INDUCIBLEKINASE)44887452635 (6847, 6848)Novel Protein sim. GBank gi|172986 (K02116) - thymidylate kinasekinase1020, 1023[Saccharomyces cerevisiae]44980234034 (3939, 3940)Novel Protein sim. GBank gi|1730060|sp|P53894|KNQ1_YEAST -kinase1001, 1003, 1004, 1006,PROBABLE SERINE/THREONINE-PROTEIN KINASE YNL161W1008, 1020, 1021, 1022,1023, 103645025322315 (6143, 6144)Novel Protein sim. GBank gi|173179 (M59835) - protein kinasekinase1015[Saccharomyces cerevisiae]45120728597 (2219, 2220)Novel Protein sim. GBank gi|1839006|emb|CAB06648| - (Z85982) argBkinase1004, 1010[Mycobacterium tuberculosis]4528219595 (693, 694)Novel Protein sim. GBank gi|231831|sp|P29931|COBP_PSEDE -kinase1020COBINAMIDE KINASE/COBINAMIDE PHOSPHATEGUANYLYLTRANSFERASE45323333334 (6951, 6952)Novel Protein sim. GBank gi|2499489|sp|Q41141|PFPB_RICCO -kinase1050PYROPHOSPHATE-FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE BETA SUBUNIT (PFP) (6-PHOSPHOFRUCTOKINASE (PYROPHOSPHATE)) (PYROPHOSPHATE-DEPENDENT 6-PHOSPHOFRUCTOSE-1-KINASE) (PPI-PFK)45466051893 (7349, 7350)Novel Protein sim. GBank gi|2499558|sp|Q55168|Y473_SYNY3-kinase1007, 1046HYPOTHETICAL 84.2 KD PROTEIN SLR047345527368121 (6569, 6570)Novel Protein sim. GBank gi|2499624|sp|Q08217|KOE5_YEAST -kinase1007PROBABLE SERINE/THREONINE-PROTEIN KINASE YOL045W45621413329 (5531, 5532)Novel Protein sim. GBank gi|2624308|emb|CAA15581| - (AL008967) ribFkinase1003[Mycobacterium tuberculosis]45766770442 (2755, 2756)Novel Protein sim. GBank gi|2665722 (AF035608) - ATP sulfurylase GTP-kinase1046binding subunit/ApS kinase [Pseudomonas aeruginosa]45832118574 (5557, 5558)Novel Protein sim. GBank gi|281611|pir||B41863 - two-componentkinase1004regulatory protein lemA - Pseudomonas syringae45925261297 (8675, 8676)Novel Protein sim. GBank gi|2853031|gb|AAC02225.1| - (AF045252)kinase1002, 1020tousled-like kinase [Mus musculus]46078395482 (2427, 2428)Novel Protein sim. GBank gi|3002527 (AF010144) - neuronal threadkinase1027protein AD7c-NTP [Homo sapiens]46178676108 (627, 628)Novel Protein sim. GBank gi|3192019|emb|CAA19418| - (AL023797)kinase1006, 1024uridylate kinase [Streptomyces coelicolor]46265678114 (8507, 8508)Novel Protein sim. GBank gi|3417448|dbj|BAA32344.1| - (AB010087)kinase1008UMP kinase [Pseudomonas aeruginosa]46379562897 (7993, 7994)Novel Protein sim. GBank gi|3721570|dbj|BAA33549| - (AB012767) CheAkinase1001Pseudomonas aeruginosa]46457300008 (5529, 5530)Novel Protein sim. GBank gi|3876090|emb|CAA93459.1| - (Z69635)kinase1003Similarity to Yeast uridine kinase (SW: URK1_YEAST); cDNA ESTEMBL: Z14695 comes from this gene; cDNA EST CEMSE17F comes fromthis gene; cDNA EST EMBL: D67355 comes from this gene; cDNA ESTyk209h1.5 comes from this gen . . .46523308597 (1307, 1308)Novel Protein sim. GBank gi|4263521|gb|AAD15347| - (AC004044)kinase1050putative WD-repeat protein [Arabidopsis thaliana]46679569260 (8601, 8602)Novel Protein sim. GBank gi|4417286|gb|AAD20411| - (AC007019)kinase1031putative shikimate kinase [Arabidopsis thaliana]46755286491 (4309, 4310)Novel Protein sim. GBank gi|4464269|emb|CAB37472| - (AL035559)kinase1026, 1050probable riboflavin kinase (FAD synthetase) [Streptomyces coelicolor]46811103781 (403, 404)Novel Protein sim. GBank gi|462451|sp|P34244|KKK1_YEAST -kinase1004PROBABLE SERINE/THREONINE-PROTEIN KINASE YKL101W4698343449 (6465, 6466)Novel Protein sim. GBank gi|464393|sp|P33639|PILS_PSEAE - SENSORkinase1008PROTEIN PILS47066441099 (661, 662)Novel Protein sim. GBank gi|464401|sp|P33973|PKN1_MYXXA -kinase1020SERINE/THREONINE-PROTEIN KINASE PKN147180219209 (2449, 2450)Novel Protein sim. GBank gi|464800|sp|P34164|SIP2_YEAST - SIP2kinase1008, 1020PROTEIN (SPM2 PROTEIN)47279822217 (4453, 4454)Novel Protein sim. GBank gi|4768862|gb|AAD29656.1|AF12475 -kinase1031(AF124757) uridylate kinase [Zymomonas mobilis]47311130500 (2149, 2150)Novel Protein sim. GBank gi|4980976|gb|AAD35552.1|AE00172 -kinase1004(AE001724) response regulator [Thermotoga maritima]47430239675 (1713, 1714)Novel Protein sim. GBank gi|5019771|gb|AAD37857.1|AF13326 -kinase1041(AF133263) histidine protein kinase-response regulator hybrid proteinCvgSY [Pseudomonas syringae pv. syringae]4759906368 (7487, 7488)Novel Protein sim. GBank gi|5458972|emb|CAB50458.1| - (AJ248288)kinase1002PAB1332 [Pyrococcus abyssi]47625139201 (8207, 8208)Novel Protein sim. GBank gi|5702015|emb|CAB52141.1| - (AJ012215)kinase1002GAL83 protein [Solanum tuberosum]47717958199 (8639, 8640)Novel Protein sim. GBank gi|585348|sp|P38080|KBQ9_YEAST -kinase1015, 1041PROBABLE SERINE/THREONINE-PROTEIN KINASE YBR059C47819513267 (6921, 6922)Novel Protein sim. GBank gi|629283|pir||S48579 - hypothetical protein -kinase1021Mycoplasma capricolum (SGC3) (fragment)47977655106 (1987, 1988)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUkinase1050SUBFAMILY J WARNING ENTRY !!!!48078090999 (8789, 8790)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUkinase1034SUBFAMILY J WARNING ENTRY !!!!48155309229 (8945, 8946)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUkinase1017SUBFAMILY J WARNING ENTRY !!!!48229682073 (7539, 7540)Novel Protein sim. GBank gi|729900|sp|Q01919|KIN4_YEAST -kinase1007SERINE/THREONINE-PROTEIN KINASE KIN448330259891 (6619, 6620)Novel Protein sim. GBank gi|730745|sp|P39928|SLN1_YEAST -kinase1006OSMOLARITY TWO-COMPONENT SYSTEM PROTEIN SLN148432290853 (2671, 2672)Novel Protein sim. GBank gi|76183|pir||QQECIL - hypothetical 35K proteinkinase1000, 1003, 1008, 1010(ileS-Isp operon) - Escherichia coli48565481433 (5521, 5522)Novel Protein sim. GBank gi|953191|emb|CAA62365| - (X90856)kinase1046aminoglycoside phosphotransferase (3′)IIps [Pseudomonas aeruginosa]48629462591 (3841, 3842)Novel Protein sim. GBank gi|1345587|sp|P49106|1431_MAIZE - 14-3-3-Contains protein domainkinaseinhibitor1024LIKE PROTEIN GF14-6(PF00244) - 14-3-3 proteins48780432144 (6789, 6790)Novel Protein sim. GBank gi|1724020|sp|P49774|YHIT_MYCLE -kinaseinhibitor1035HYPOTHETICAL HIT-LIKE PROTEIN U296A48829492267 (2929, 2930)Novel Protein sim. GBank gi|1176807|sp|Q09564|YR71_CAEEL -Contains protein domainkinasereceptor1035HYPOTHETICAL 118.2 KD PROTEIN F43C1.1 IN CHROMOSOME III(PF00560) - Leucine Rich Repeat48978362875 (4495, 4496)Novel Protein sim. GBank gi|101398|pir||B28097 - TyB protein - yeastkinasereceptor1006(Saccharomyces cerevisiae) transposon Ty1-H349020295815 (8007, 8008)Novel Protein sim. GBank gi|4758676|ref|NP_004181.1|pLIPF - lipase,lipase1020gastric49125267855 (4647, 4648)Novel Protein sim. GBank gi|1022734 (U36277) - I-kappa B alpha chainContains protein domainMHC1021[Mus musculus](PF00023) - Ank repeat49213889767 (8155, 8156)MHC103149341090826 (8385, 8386)Novel Protein sim. GBank gi|4539520|emb|CAB39994.1| - (AL035424)Contains protein domainnucl_recpt1034dA22D12.1 (novel protein similar to Drosophila Kelch (Ring Canal protein,(PF00651) - BTB/POZ domainKEL) and a heterogenous set of other types of proteins) [Homo sapiens]49413075804 (6425, 6426)Novel Protein sim. GBank gi|2529416 (U73935) - unknown [Shewanellanucl_recpt1022sp. SCRC-2738]49540379402 (7751, 7752)Novel Protein sim. GBank gi|3036883|emb|CAA18516| - (AL022374) nucl_recpt1034putative ABC transporter [Streptomyces coelicolor]49687453786 (4771, 4772)Novel Protein sim. GBank gi|5360230|dbj|BAA81911.1| - (AB015287) Rannucl_recpt1002, 1006, 1015, 1023[Oryza sativa]49713872373 (6931, 6932)Novel Protein sim. GBank gi|5453555|ref|NP_006316.1|pARA2 - RAN,nucl_recpt1031member RAS oncogene family49827957653 (7881, 7882)Novel Protein sim. GBank gi|4050093 (AF110520) - NG28 [MusContains protein domainnuclease1003, 1022musculus](PF00023) - Ank repeat49985800159 (5591, 5592)Novel Protein sim. GBank gi|2500086|sp|Q59560|RECA_MYCSM - RECAContains protein domainnuclease1007, 1014, 1023PROTEIN(PF00154) - recA bacterium DNArecombination proteins50078676017 (4051, 4052)Novel Protein sim. GBank gi|1171033|sp|P43247|MSH2_MOUSE - DNAContains protein domainnuclease1006MISMATCH REPAIR PROTEIN MSH2(PF00488) - DNA mismatch repairproteins, mutS family50135900336 (1943, 1944)Novel Protein sim. GBank gi|79102|pir||A28668 - DNA mismatch repairContains protein domainnuclease1050protein mutS - Salmonella typhimurium(PF00488) - DNA mismatch repairproteins, mutS family50279648614 (5663, 5664)Novel Protein sim. GBank gi|887620|emb|CAA90210| - (Z49939) unknownContains protein domainnuclease1002, 1021, 1035[Saccharomyces cerevislae](PF00636) - RNase3 domain50379818359 (4553, 4554)Novel Protein sim. GBank gi|140964|sp|P26793|RA27_YEAST -Contains protein domainnuclease1004STRUCTURE SPECIFIC ENDONUCLEASE RAD27(PF00752) - XPG N-terminaldomain50466258516 (1831, 1832)Novel Protein sim. GBank gi|1710612|sp|Q10793|RNH2_MYCTU -Contains protein domainnuclease1008, 1015PROBABLE RIBONUCLEASE HII (RNASE HII)(PF01351) - Ribonuclease HII50528962172 (7273, 7274)Novel Protein sim. GBank gi|134579|sp|P24554|RADA_ECOLI - DNAContains protein domainnuclease1002REPAIR PROTEIN RADA (DNA REPAIR PROTEIN SMS)(PF01443) - Viral (Superfamily 1)RNA helicase50678317604 (1805, 1806)Novel Protein sim. GBank gi|106322|pir||B34087 - hypothetical proteinnuclease1024(L1H 3′ region) - human50779113849 (2893, 2894)Novel Protein sim. GBank gi|106322|pir||B34087 - hypothetical proteinnuclease1006(L1H 3′ region) - human50811814919 (1113, 1114)Novel Protein sim. GBank gi|111811|pir||S16788 - probable reversenuclease1022transcriptase - rat50910340226 (1591, 1592)Novel Protein sim. GBank gi|1174917|sp|P44410|UVRA_HAEIN -nuclease1002EXCINUCLEASE ABC SUBUNIT A51079959371 (8569, 8570)Novel Protein sim. GBank gi|1176326|sp|PP44608|RBN_HAEIN -nuclease1014RIBONUCLEASE BN (RNASE BN)51157284222 (6893, 6894)Novel Protein sim. GBank gi|118921|sp|P21704|DRN1_RAT -nuclease1003, 1004, 1008, 1020,DEOXYRIBONUCLEASE I PRECURSOR (DNASE I)1022, 103151212797175 (1623, 1624)Novel Protein sim. GBank gi|119669|sp|P07648|EX5C_ECOLI -nuclease1003EXODEOXYRIBONUCLEASE V 125 KD POLYPEPTIDE(EXONUCLEASE V GAMMA CHAIN)51329896989 (105, 106)Novel Protein sim. GBank gi|126295|sp|P08547|LIN1_HUMAN - LINE-1nuclease1022REVERSE TRANSCRIPTASE HOMOLOG51495087970 (1815, 1816)Novel Protein sim. GBank gi|126295|sp|P08547|LIN1_HUMAN - LINE-1nuclease1041REVERSE TRANSCRIPTASE HOMOLOG51533207232 (441, 442)Novel Protein sim. GBank gi|126296|sp|P08548|LIN1_NYCCO - LINE-1nuclease1024REVERSE TRANSCRIPTASE HOMOLOG51686471727 (761, 762)Novel Protein sim. GBank gi|126296|sp|P08548|LIN1_NYCCO - LINE-1nuclease1026REVERSE TRANSCRIPTASE HOMOLOG51779634315 (2057, 2058)Novel Protein sim. GBank gi|126296|sp|P08548|LIN1_NYCCO - LINE-1nuclease1023REVERSE TRANSCRIPTASE HOMOLOG51856155730 (7725, 7726)Novel Protein sim. GBank gi|126296|sp|P08548|LIN1_NYCCO - LINE-1nuclease1019REVERSE TRANSCRIPTASE HOMOLOG51946873742 (7985, 7986)Novel Protein sim. GBank gi|1335205|emb|CAA36480| - (X52235) ORFIInuclease1026[Homo sapiens]52011818060 (1117, 1118)Novel Protein sim. GBank gi|1553037 (U68235) - RecN [Bacillus subtilis]nuclease100452166727335 (5549, 5550)Novel Protein sim. GBank gi|1890658 (U70046) - UV endonucleasenuclease1046[Pseudomonas aeruginosa]52236902869 (8153, 8154)Novel Protein sim. GBank gi|2072951 (U93564) - putative p150 [Homonuclease1024sapiens]52358090567 (7577, 7578)Novel Protein sim. GBank gi|2072964 (U93569) - putative p150 [Homonuclease1051sapiens]52488098361 (8017, 8018)Novel Protein sim. GBank gi|2072967 (U93570) - putative p150 [Homonuclease1017sapiens]52594853626 (1931, 1932)Novel Protein sim. GBank gi|2193870|dbj|BAA20419| - (D84391) reversenuclease1008transcriptase [Mus musculus]52621433107 (2223, 2224)Novel Protein sim. GBank gi|2443320|dbj|BAA22288| - (D85597)nuclease1008polyprotein [Oryza australiensis]52711588373 (7217, 7218)Novel Protein sim. GBank gi|2979589 (AC004416) -nuclease1031WUGSC: H_RG013N12.gw.1335199.a gene product [Homo sapiens]52835003877 (5019, 5020)Novel Protein sim. GBank gi|2981631|dbj|BAA25253.1| - (AB012223)nuclease1047ORF2 [Canis familiaris]5299845639 (5731, 5732)Novel Protein sim. GBank gi|2981631|dbj|BAA25253.1| - (AB012223)nuclease1002ORF2 [Canis familiaris]53035100184 (7789, 7790)Novel Protein sim. GBank gi|2981631|dbj|BAA25253.1| - (AB012223)nuclease1022ORF2 [Canis familiaris]53120728368 (1567, 1568)Novel Protein sim. GBank gi|3329275 (AE001353) - Axial Filament Proteinnuclease1004[Chlamydia trachomatis]53295001722 (7419, 7420)Novel Protein sim. GBank gi|417577|sp|P32863|RA54_YEAST - DNAnuclease1015, 1020, 1022, 1035REPAIR AND RECOMBINATION PROTEIN RAD5453370945419 (5279, 5280)Novel Protein sim. GBank gi|4468694|emb|CAB38148.1| - (AL035591)nuclease1026ABC excision nuclease subunit A [Streptomyces coelicolor]53479756492 (3559, 3560)Novel Protein sim. GBank gi|4585583|emb|CAB40851.1| - (AL049628)nuclease1020putative DNA repair protein [Streptomyces coelicolor]53571793553 (3885, 3886)Novel Protein sim. GBank gi|465488|sp|P33301|XRS2_YEAST - DNAnuclease1007REPAIR PROTEIN XRS253671059951 (2151, 2152)Novel Protein sim. GBank gi|465736|sp|P34280|YKK3_CAEEL -nuclease1030HYPOTHETICAL 64.3 KD GTP-BINDING PROTEIN C02F5.3 INCHROMOSOME III53724116094 (3991, 3992)Novel Protein sim. GBank gi|5031889|ref|NP_005570.1|pLRE1 - LINEnuclease1002retrotransposable element 153878269359 (6701, 6702)Novel Protein sim. GBank gi|5031889|ref|NP_005570.1|pLRE1 - LINEnuclease1026retrotransposable element 153979620600 (4693, 4694)Novel Protein sim. GBank gi|536873 (M34549) - POL3 gene productnuclease1023[Saccharomyces cerevisiae]54078385400 (5471, 5472)Novel Protein sim. GBank gi|5678922|gb|AAD46808.1|AF15764 -nuclease1024(AF157643) RecB [Mycobacterium smegmatis]54180218357 (17, 18)Novel Protein sim. GBank gi|731301|sp|P39707|SE34_YEAST - TRNA-nuclease1002, 1004, 1006, 1008,SPLICING ENDONUCLEASE SUBUNIT SEN34 (TRNA-INTRON1010, 1015, 1020, 1021,ENDONUCLEASE)1022, 1028, 1031, 103554278739907 (257, 258)Novel Protein sim. GBank gi|807677 (M13101) - unknown protein [Rattusnuclease1024norvegicus]54379654125 (6053, 6054)Novel Protein sim. GBank gi|87765|pir||JU0033 - hypothetical L1 proteinnuclease1050(third Intron of gene TS) - human54486476034 (8003, 8004)Novel Protein sim. GBank gi|87765|pir||JU0033 - hypothetical L1 proteinnuclease1026(third Intron of gene TS) - human54571770950 (2443, 2444)nuclease102454646905681 (4497, 4498)nuclease103754779113846 (2735, 2736)Novel Protein sim. GBank gi|2132474|pir||S58091 - probable membranenucleaseinhib1021, 1036protein YDR091c - yeast (Saccharomyces cerevisiae)54879211727 (8029, 8030)Novel Protein sim. GBank gi|499686 (L33861) - fibropellin Ia [HeliocidarisContains protein domainoncogene1051erythrogramma](PF00008) - EGF-like domain54925266562 (2359, 2360)Novel Protein sim. GBank gi|5650780|gb|AAD45948.1|AF15196 -Contains protein domainoncogene1006(AF151968) RGS protein RGS-17 [Gallus gallus](PF00615) - Regulator of Gprotein signaling domain55079800908 (8519, 8520)Novel Protein sim. GBank gi|135914|sp|P17408|TLM_MOUSE - TLMoncogene1001, 1002, 1006, 1015,PROTEIN (TLM ONCOGENE)1020, 1022, 1024, 1025,1031, 1035, 1041, 105155127846133 (7651, 7652)Novel Protein sim. GBank gi|2137470|pir||49342 - Ifc - mouseoncogene100455214995192 (3049, 3050)Novel Protein sim. GBank gi|2462824 (AF000657) - similar to Junoncogene1022activation domain binding protein [Arabidopsis thaliana]55349524780 (1273, 1274)Novel Protein sim. GBank gi|2516239|dbj|BAA22654| - (AB004664)oncogene1022, 1033, 1055Rab33B [Mus musculus]55429689163 (4623, 4624)Novel Protein sim. GBank gi|313261|emb|CAA51936| - (X73532) TEF1oncogene1007[Saccharomyces cerevisiae]55525255728 (1573, 1574)Novel Protein sim. GBank gi|4586338|dbj|BAA76357.1| - (AB016787)Contains protein domainoxidase1002cytochrome o ubiquinol oxidase B [Pseudomonas putida](PF00115) - Cytochrome C andQuinol oxidase polypeptide I55680232185 (2119, 2120)Novel Protein sim. GBank gi|117135|sp|P21592|COXX_YEAST -oxidase1015, 1020, 1022CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX10PRECURSOR55794631702 (4875, 4876)Novel Protein sim. GBank gi|1176480|sp|P44453|YJJT_HAEIN -oxidase1002, 1028HYPOTHETICAL PROTEIN HI001255878949661 (4455, 4456)Novel Protein sim. GBank gi|129736|sp|P28225|PDXH_ECOLI -oxidase1021PYRIDOXAMINE 5′-PHOSPHATE OXIDASE (PNP/PMP OXIDASE)55990936753 (197, 198)Novel Protein sim. GBank gi|3024323|sp|O35078|OXDA_RAT - D-AMINOoxidase1018ACID OXIDASE (DAMOX) (DAO) (DAAO)56078368526 (7411, 7412)Novel Protein sim. GBank gi|3402239|emb|CAA20175| - (AL031184)oxidase1002, 1026aminomethyltransferase [Streptomyces coelicolor]56179618286 (5795, 5796)Novel Protein sim. GBank gi|520754 (L27797) - putative [Bacillus subtilis]oxidase100356227980141 (2865, 2866)Novel Protein sim. GBank gi|547994|sp|P37061|NAOX_ENTFA - NADHoxidase1004OXIDASE (NOXASE)56320414038 (8695, 8696)Novel Protein sim. GBank gi|5578703|gb|AAD17377.2| - (U65001)Contains protein domainoxygenase1008putative aromatic-ring hydroxylating dioxygenase alpha-subunit(PF00355) - Rieske [2Fe-2S][Sphingomonas sp.]domain56410200183 (1625, 1626)Novel Protein sim. GBank gi|3043760|dbj|BAA25544| - (AB012759) rPOPContains protein domainpeptidase1004[Rattus norvegicus](PF00326) - Prolyl oligopeptidasefamily56578680263 (6917, 6918)Novel Protein sim. GBank gi|1651216|dbj|BAA13561.1| - (D88209) Pz-peptidase1002peptidase [Bacillus IIchenlformis]56680079434 (1155, 1156)Novel Protein sim. GBank gi|2415396 (AF015775) - carboxypeptidasepeptidase1031[Bacillus subtilis]56779853412 (107, 108)Novel Protein sim. GBank gi|2688962 (AF027768) - LspA [Serratiapeptidase1002, 1004marcescens]56886477781 (7743, 7744)Novel Protein sim. GBank gi|2911008|emb|CAA17501| - (AL021958) map'peptidase1017[Mycobacterium tuberculosis]56928828156 (5349, 5350)Novel Protein sim. GBank gi|461915|sp|P33894|DAP1_YEAST -peptidase1001, 1006, 1020DIPEPTIDYL AMINOPEPTIDASE A (DPAP A) (YSCIV)57088098768 (5321, 5322)Novel Protein sim. GBank gi|477819|pir||B48529 - mitochondrialpeptidase1005, 1020, 1023processing peptidase (EC 3.4.99.41) beta chain precursor - potato57114998912 (6635, 6636)Novel Protein sim. GBank gi|5139244|gb|AAD40473.1|AF11653 -peptidase1022(AF116532) endopeptidase O [Streptococcus parasanguinis]57255926145 (1305, 1306)Novel Protein sim. GBank gi|731481|sp|P40051|YEQ8_YEAST -peptidase1019, 1020, 1031HYPOTHETICAL 58.0 KD PEPTIDASE IN PTP3-ILV1 INTERGENICREGION57320436220 (229, 230)Novel Protein sim. GBank gi|1085007|pir||S49465 - catalase (EC 1.11.1.6) -Contains protein domainperoxidase1022nematode (Onchocerca volvulus)(PF00199) - Catalase57446693063 (6349, 6350)Novel Protein sim. GBank gi|231692|sp|P29422|CATA_MICLU -Contains protein domainperoxidase1031CATALASE(PF00199) - Catalase57580384348 (6741, 6742)Novel Protein sim. GBank gi|3608|emb|CAA28298| - (X04625) catalase TContains protein domainperoxidase1002, 1003, 1004, 1006,(AA 1-562) [Saccharomyces cerevisiae](PF00199) - Catalase1007, 1008, 1015, 1020, 1021, 1022, 1024, 1026,1028, 1031, 1035, 1036104157679256928 (8821, 8822)Novel Protein sim. GBank gi|2598550|emb|CAA03927| - (AJ000109)Contains protein domainperoxidase1020, 1024, 1036, 1041gluthatione peroxidase [Lactococcus lactis](PF00255) - Glutathioneperoxidases57778760632 (5285, 5286)Novel Protein sim. GBank gi|464970|sp|P34760|TSA1_YEAST - THIOL-peroxidase1041SPECIFIC ANTIOXIDANT PROTEIN (PRP)57878736927 (6541, 6542)Novel Protein sim. GBank gi|465521|sp|P34227|YBG4_YEAST -peroxidase1020HYPOTHETICAL 29.5 KD PROTEIN IN SEF1-KIP1 INTERGENICREGION57986471554 (7799, 7800)Novel Protein sim. GBank gi|1001298|dbj|BAA10785| - (D64006)Contains protein domainphosphatase1017chemotaxis protein CheA [Synechocystis sp.](PF00072 - Response regulatorreceiver domain58094997571 (7845, 7846)Novel Protein sim. GBank gi|2815358|emb|CAA16481| - (AL021530)Contains protein domainphosphatase1004puative turgor pressure regulator [Streptomyces coelicolor](PF00072) - Response regulatorreceiver domain58195292942 (2279, 2280)Novel Protein sim. GBank gi|2916942|emb|CAA17580| - (AL021999)Contains protein domainphosphatase1003, 1010, 1014, 1020,hypothetical protein Rv0981 [Mycobacterium tuberculosis](PF00072) - Response regulator1022, 1031, 1036receiver domain58211692257 (7489, 7490)Novel Protein sim. GBank gi|1172700|sp|P43922|PT1_HAEIN -Contains protein domainphosphatase1031PHOSPHOENOLPYRUVATE- PROTEIN PHOSPHOTRANSFERASE(PF00391) - PEP-utilizing(PHOSPHOTRANSFERASE SYSTEM, ENZYME I)enzymes58323308875 (2679, 2680)Novel Protein sim. GBank gi|3281853|emb|CAA19748| - (AL031004)Contains protein domainphosphatase1050putative protein [Arabidopsis thaliana](PF00481) - Protein phosphatase2C58479168027 (4989, 4990)Novel Protein sim. GBank gi|499301|emb|CAA54383| - (X77116) ABI1Contains protein domainphosphatase1028, 1047[Arabidopsis thaliana](PF00481) - Protein phosphatase2C58520293956 (5551, 5552)Novel Protein sim. GBank gi|2960189|emb|CAA18087.1| - (AL022121)Contains protein domainphosphatase1001hypothetical protein Rv3765c [Mycobacterium tuberculosis](PF00486) - Transcriptionalregulatory protein, C terminal58636990550 (8281, 8282)Novel Protein sim. GBank gi|509815 (U01971) - MtrA [MycobacteriumContains protein domainphosphatase1014tuberculosis](PF00486) - Transcriptionalregulatory protein, C terminal58780241814 (3833, 3834)Novel Protein sim. GBank gi|586390|sp|P38148|YB9T_YEAST -Contains protein domainphosphatase1004, 1006, 1023PROBABLE PROTEIN-TYROSINE PHOSPHATASE YBR276C(PF00782) - Dual specificityphosphatase, catalytic domain58887898935 (5933, 5934)Novel Protein sim. GBank gi|3128356 (AF010496) - hypothetical proteinphosphatase1013[Rhodobacter capsulatus]58929455367 (3715, 3716)Novel Protein sim. GBank gi|4091129|gb|AAC98973| - (AF050165) proteinphosphatase1024phosphatase 2A regulatory subunit PR59; PP2A regulatory subunit PR59[Mus musculus]59010868760 (5779, 5780)Novel Protein sim. GBank gi|141240|sp|P23139|YPE2_RHORU -phosphorylase1031HYPOTHETICAL 25.8 KD PROTEIN IN PETC 3′REGION59179181916 (7997, 7998)Novel Protein sim. GBank gi|118829|sp|P21189|DPO2_ECOLI - DNAContains protein domainpolymerase1020POLYMERASE II (POL II)(PF00136) - DNA polymerasefamily B5928364885 (779, 780)Novel Protein sim. GBank gi|5002704|emb|CAB44358.1| - (AJ242630)Contains protein domainpolymerase1008DNA polymerase I [Methylobacterium sp. DM4](PF00476) - DNA polymerasefamily A59379639300 (3001, 3002)Novel Protein sim. GBank gi|4982191|gb|AAD36686.1|AE00180 -Contains protein domainpolymerase1035(AE001805) DNA-directed DNA polymerase I [Thermotoga maritima](PF01367) - 5′-3′exonuclease59486474933 (3183, 3184)Novel Protein sim. GBank gi|123452|sp|P28630|HOLA_ECOLI - DNApolymerase1035POLYMERASE III, DELTA SUBUNIT59579612944 (7821, 7822)Novel Protein sim. GBank gi|171412 (M61710) - DNA polymerase IIpolymerase1004subunit-B [Saccharomyces cerevislae]59627845712 (809, 810)Novel Protein sim. GBank gi|1723953|sp|P53091|MCM6_YEAST -polymerase1008MINICHROMOSOME MAINTENANCE PROTEIN 659735112033 (1855, 1856)Novel Protein sim. GBank gi|2506368|sp|P28631|HOLB_ECOLI - DNApolymerase1000POLYMERASE III, DELTA'SUBUNIT59879626110 (7599, 7600)Novel Protein sim. GBank gi|2664208|emb|CAA10903| - (AJ222643)polymerase1008, 1036Glycyl-tRNA synthetase [Thermus thermophilus]59980237241 (413, 414)Novel Protein sim. GBank gi|2960145|emb|CAA18043.1| - (AL022121)polymerase1001, 1008, 1020, 1022,dnaZX [Mycobacterium tuberculosis]102560020474435 (1219, 1220)Novel Protein sim. GBank gi|4102990 (AF019254) - DNA polymerasepolymerase1031epsilon homolog [Emericella nidulans]60133039786 (8615, 8616)Novel Protein sim. GBank gi|4102990 (AF019254) - DNA polymerasepolymerase1000epsilon homolog [Emericella nidulans]60220610414 (1915, 1916)Novel Protein sim. GBank gi|585062|sp|Q07700|DPO1_MYCTU - DNApolymerase1003POLYMERASE I (POL I)60330407410 (5247, 5248)Novel Protein sim. GBank gi|730382|sp|P10363|PRI1_YEAST - DNApolymerase1047PRIMASE SMALL SUBUNIT (DNA PRIMASE 48 KD SUBUNIT) (P48)60479835306 (1879,1880)Novel Protein sim. GBank gi|730503|sp|P40339|RFC4_YEAST -polymerase1021ACTIVATOR 1.37 KD SUBUNIT (REPLICATION FACTOR C 37 KDSUBUNIT)60586660271 (2327, 2328)Novel Protein sim. GBank gi|2104908|emb|CAA68912| - (Y07632)Contains protein domainpotassium_channel1041potassium channel [Zea mays](PF00023) - Ank repeat60634129572 (6721, 6722)Novel Protein sim. GBank gi|4103749 (AF027166) - aspartic proteaseContains protein domainprotease1024precursor [Strongyloides stercoralis](PF00026) - Eukaryotic aspartylprotease60794140127 (7575, 7576)Novel Protein sim. GBank gi|4455705|emb|CAB36690| - (AL035500)Contains protein domainprotease1002putative serine protease [Mycobacterium leprae](PF00089) - Trypsin60827969651 (607, 608)Novel Protein sim. GBank gi|4506153|ref|NP_002764.1|pPRSS -Contains protein domainprotease1031protease, serine, 8 (prostasin)(PF00089) - Trypsin60978738795 (7611, 7612)Novel Protein sim. GBank gi|91949|pir||S15904 - alpha-1 proteinaseContains protein domainprotease1020, 1024inhibitor III, variant 1 precursor - rat(PF00207) - Alpha-2-macroglobulin family61079834611 (5999, 6000)Novel Protein sim. GBank gi|130858|sp|P21243|PRCI_YEAST -Contains protein domainprotease1015, 1021PROTEASOME COMPONENT C7-ALPHA (MACROPAIN SUBUNIT C7-(PF00227) - Proteasome A-typeALPHA) (PROTEINASE YSCE SUBUNIT 7) (MULTICATALYTICand B-typeENDOPEPTIDASE COMPLEX C7) (COMPONENT Y8) (SCL1SUPPRESSOR PROTEIN)61110186498 (6507, 6508)Novel Protein sim. GBank gi|130880|sp|P23639|PRC3_YEAST -Contains protein domainprotease1023PROTEASOME COMPONENT Y7 (MACROPAIN SUBUNIT Y7)(PF00227) - Proteasome A-type(PROTEINASE YSCE SUBUNIT 7) (MULTICATALYTICand B-typeENDOPEPTIDASE COMPLEX SUBUNIT Y7)61265674029 (8585, 8586)Novel Protein sim. GBank gi|2252790 (U77784) - Lmp10 proteasomeContains protein domainprotease1008, 1014, 1020, 1035subunit [Mus musculus](PF00227) - Proteasome A-typeand B-type61320696442 (559, 560)Novel Protein sim. GBank gi|575457 (U17018) - Cdc40p [SaccharomycesContains protein domainprotease1003cerevisiae](PF00400) - WD domain, G-betarepeat61494119776 (1269, 1270)Novel Protein sim. GBank gi|1167860|emb|CAA93116| - (Z68888)protease1014Endoprotease FURIN [Spodoptera frugiperda]61510210483 (2673, 2674)Novel Protein sim. GBank gi|2293464 (AF009645) - proteasome alphaprotease1003subunit [Mycobacterium smegmatis]61665900232 (3531, 3532)Novel Protein sim. GBank gi|2351374 (U54560) - putative 26Sprotease1014proteasome subunit athMOV34 [Arabidopsis thaliana]61780209080 (7199, 7200)Novel Protein sim. GBank gi|2499849|sp|P55995|LON_HELPY - ATP-protease1050DEPENDENT PROTEASE LA61824140149 (495, 496)Novel Protein sim. GBank gi|2499891|sp|P76403|YEGQ_ECOLI -protease1002PUTATIVE PROTEASE IN BAER-OGRK INTERGENIC REGION61911611585 (4063, 4064)Novel Protein sim. GBank gi|4416302|gb|AAD20307| - (AF105716) copia-protease1022type pol polyprotein [Zea mays]62027964421 (5119, 5120)Novel Protein sim. GBank gi|464859|sp|P33297|PRSA_YEAST - 26Sprotease1020, 1031PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEINHOMOLOG 1) (TBP-1)62119518929 (919, 920)Novel Protein sim. GBank gi|731574|sp|P38886|SUN1_YEAST - 26Sprotease1008PROTEASOME REGULATORY SUBUNIT SUN162279842773 (8641, 8642)Novel Protein sim. GBank gi|899394|emb|CAA90367| - (Z50048) unknownprotease1004, 1006, 1024, 1035[Saccharomyces cerevislae]62320469812 (7119, 7120)protease103162427975288 (7229, 7230)porotease105062565891387 (8965, 8966)Novel Protein sim. GBank gi|125520|sp|P01048|KNT1_RAT - T-Contains protein domainproteaseinhib1007, 1051KININOGEN I PRECURSOR (MAJOR ACUTE PHASE PROTEIN)(PF00031) - Cystatin domain(ALPHA-1-MAP) (THIOSTATIN) (CONTAINS: T-KININ)62617248503 (4639, 4640)Novel Protein sim. GBank gi|772998|emb|CAA71412| - (Y10386) C1Contains protein domainproteaseinhib1036inhibitor [Mus musculus](PF00079) - Serpins (serineprotease inhibitors)62730659605 (5931, 5932)Novel Protein sim. GBank gi|2507387|sp|P05544|CPI3_RAT -Contains protein domainproteaseinhib1020CONTRAPSIN-LIKE PROTEASE INHIBITOR 3 PRECURSOR (CPI-23)(PF00079) - Serpins (serine(SERINE PROTEASE INHIBITOR 1) (SPI-1)protease inhibitors)62878741102 (2337, 2338)Novel Protein sim. GBank gi|54173|emb|CAA40106| - (X56786)Contains protein domainproteaseinhib1015, 1041contraspin [Mus musculus](PF00079) - Serpins (serineprotease inhibitors)62978719449 (8877, 8878)Novel Protein sim. GBank gi|285190|pir||A42210 - alpha-1-macroglobulinContains protein domainproteaseinhib1002, 1006, 1020, 1024precursor - rat(PF00207) - Alpha-2-macroglobulin family63095087262 (339, 340)Novel Protein sim. GBank gi|91949|pir||S15904 - alpha-1 proteinaseContains protein domainproteaseinhib1003, 1004, 1006, 1007,inhibitor III, variant 1 precursor - rat(PF00207) - Alpha-2-1015, 1020, 1024macroglobulin family63178742120 (8441, 8442)Novel Protein sim. GBank gi|112913|sp|P06238|A2MG_RAT - ALPHA-2-Contains protein domainproteaseinhib1020MACROGLOBULIN PRECURSOR (ALPHA-2-M)(PF01835) - Alpha-2-macroglobulin family N-terminalregion6328483614 (6277, 6278)Novel Protein sim. GBank gi|4539683|gb|AAD22172.1|AF09901 -proteaseinhib1020, 1022(AF099016) hepatocyte growth factor activator inhibitor type 2 [Musmusculus]63380499864 (4777, 4778)Novel Protein sim. GBank gi|1174866|sp|P00127|UCRH_YEAST -Contains protein domainreductase1002, 1003, 1004, 1006,UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD(PF00010) - Helix-loop-helix DNA-1010, 1020, 1021, 1022,PROTEIN (MITOCHONDRIAL HINGE PROTEIN) (COMPLEX IIIbinding domain1024, 1028, 1031, 1035,POLYPEPTIDE VI)1036, 104163482178166 (4109, 4110)Novel Protein sim. GBank gi|2498064|sp|Q12746|YMM5_YEAST -Contains protein domainreductase1001, 1002, 1003, 1004,HYPOTHETICAL 35.3 KD PROTEIN IN HMGS-TUB3 INTERGENIC(PF00175) - Oxidoreductase1006, 1007, 1014, 1020,REGIONFAD/NAD-binding domain1021, 1022, 1031, 104163580227721 (3483, 3484)Novel Protein sim. GBank gi|585542|sp|P38626|NC5R_YEAST -Contains protein domainreductase1020, 1031PUTATIVE NADH-CYTOCHROME B5 REDUCTASE (P35)(PF00175) - OxidoreductaseFAD/NAD-binding domain63679570706 (1655, 1656)Novel Protein sim. GBank gi|4007669|emb|CAA22355| - (AL034443)Contains protein domainreductase1015putative oxidoreductase [Streptomyces coelicolor](PF00248) - Aldo/keto reductasefamily63780192761 (2631, 2632)Novel Protein sim. GBank gi|401472|sp|P308631|YAFB_ECOLI -Contains protein domainreductase1055HYPOTHETICAL OXIDOREDUCTASE IN ASPU-MLTD INTERGENIC(PF00248) - Aldo/keto reductaseREGIONfamily63879581728 (6427, 6428)Novel Protein sim. GBank gi|3329298 (AE001355) - RibonucleosideContains protein domainreductase1014, 1020, 1028, 1051Reductase, Small Chain [Chlamydia trachomatis](PF00268) - Ribonucleotidereductases63978739067 (2989, 2990)Novel Protein sim. GBank gi|1075225|pir||B64135 - ribonucleoside -Contains protein domainreductase1020diphosphate reductase 1 alpha chain (nrdA) homolog - Haemophilus(PF00317) - Ribonucleotideinfluenzae (strain Rd KW20)reductase64079183351 (3167, 3168)Novel Protein sim. GBank gi|417657|sp|Q03604|RIR1_CAEEL -Contains protein domainreductase1022PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE(PF00317) - RibonucleotideCHAIN (RIBONUCLEOTIDE REDUCTASE)reductase64180080919 (3257, 3258)Novel Protein sim. GBank gi|66408|pir||RDEC1R - ribonucleoside-Contains protein domainreductase1004, 1031diphosphate reductase (EC 1.17.4.1) alpha chain - Escherichia coli(PF00317) - Ribonucleotidereductase64221426814 (3225, 3226)Novel Protein sim. GBank gi|1502421 (U59433) - 3-ketoacyl-acyl carrierContains protein domainreductase1020protein reductase [Bacillus subtilis](PF00516) - Envelopeglycoprotein GP12064320296124 (903, 904)Novel Protein sim. GBank gi|421256|pir||S34724 - probableContains protein domainreductase1031oxidoreductase - Serratia marcescens(PF00678) - Short chaindehydrogenase/reductase C-terminus64480071440 (1701, 1702)Novel Protein sim. GBank gi|114049|sp|P19480|AHPF_SALTY - ALKYLreductase1003, 1004, 1022, 1046HYDROPEROXIDE REDUCTASE SUBUNIT F (ALKYLHYDROPEROXIDE REDUCTASE F52A PROTEIN)64579885703 (2011, 2012)Novel Protein sim. GBank gi|1351892|sp|P48360|ADRO_YEAST -reductase1015NADPH: ADRENODOXIN OXIDOREDUCTASE HOMOLOG PRECURSOR(ADRENODOXIN REDUCTASE HOMOLOG)64665679723 (3281, 3282)Novel Protein sim. GBank gi|140583|sp|P18579|MURB_BACSU - UDP-N-reductase1014ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE (UDP-NACETYLMURAMATE DEHYDROGENASE)64717293190 (1, 2)Novel Protein sim. GBank gi|1655954 (U68759) - pentaerythritolreductase1036tetranitrate reductase [Enterobacter cloacae]64812999132 (8383, 8384)Novel Protein sim. GBank gi|1730037|sp|P50171|KE6_MOUSE - KE6reductase1022PROTEIN (KE-6)64923329071 (1535, 1536)Novel Protein sim. GBank gi|2078012|emb|CAB08443| - (Z95207) cysG2reductase1024[Mycobacterium tuberculosis]65011753877 (2129, 2130)Novel Protein sim. GBank gi|2182004|emb|CAB09473| - (Z96072)reductase1020hypothetical protein Rv2713 [Mycobacterium tuberculosis]65179967649 (6803, 6804)Novel Protein sim. GBank gi|2443331|dbj|BAA22375| - (D86491) Nfrlreductase1031[Xenopus laevis]65235608122 (8335, 8336)Novel Protein sim. GBank gi|2851634|sp|Q50591|Y0D1_MYCTU -reductase1010, 1050HYPOTHETICAL 50.0 KD PROTEIN CY1A11.0165378786556 (6879, 6880)Novel Protein sim. GBank gi|2909446|emb|CAA17334| - (AL021929)reductase1006fabG4 [Mycobacterium tuberculosis]65466726810 (5515, 5516)Novel Protein sim. GBank gi|2995313|emb|CAA18341| - (AL022268)reductase1007ribonucleotide reductase [Streptomyces coelicolor]65511611599 (5991, 5992)Novel Protein sim. GBank gi|3128336 (AF010496) - precorrin-6xreductase1022reductase [Rhodobacter capsulatus]65679821280 (5765, 5766)Novel Protein sim. GBank gi|3243170 (AF060489) - initial dioxygenasereductase1041reductase subunit [Sphingomonas sp. CB3]65780052438 (7591, 7592)Novel Protein sim. GBank gi|3402836|emb|CAA76082| - (Y16136) 2-reductase1008enoate reductase [Moorella thermoacetica]65830790620 (7347, 7348)Novel Protein sim. GBank gi|34138841dbj|BAA32306| - (AB007930)reductase1002KIAA0461 perotein [Homo sapiens]65957523089 (7899, 7900)Novel Protein sim. GBank gi|3659621 (AF052519) - c-di-GMPreductase1008, 1023phosphodiesterase A [Acetobacter xylinus]66080080009 (4441, 4442)Novel Protein sim. GBank gi|3913675|sp|Q08908|FRE5_YEAST -reductase1006, 1015, 1020, 1024,FERRIC REDUCTASE TRANSMEMBRANE COMPONENT 51031PRECURSOR66194141225 (3089, 3090)Novel Protein sim. GBank gi|4008535|emb|CAA22504| - (AL034492)reductase1002putative oxidoreductase subunit [Streptomyces coelicolor]66278374813 (4175, 4176)Novel Protein sim. GBank gi|4581047|gb|AAD24584.1|AF13480 -reductase1002(AF134807) putative dihydroflavonol reductase [Oryza sativa]66379910083 (5023, 5024)Novel Protein sim. GBank gi|465606|sp|P33029|YEIQ_ECOLI -reductase1021HYPOTHETICAL 54.0 KD PROTEIN IN FRUB-RTN INTERGENICREGION66456121079 (4625, 4626)Novel Protein sim. GBank gi|4666287|dbj|BAA77214.1| - (D85764)reductase1006, 1007cytosolic monodehydroascorbate reductase [Oryza sativa]66520467312 (2713, 2714)Novel Protein sim. GBank gi|4755082|gb|AAA25100.2| - (L06800) nitratereductase1008reductase large subunit [Klebsiella oxytoca]66665472462 (2701, 2702)Novel Protein sim. GBank gi|4803683|emb|CAB42663.1| - (AL049819)reductase1006, 1021, 1026pyrroline-5-carboxylate reductase [Streptomyces coelicolor]66786723714 (9053, 9054)Novel Protein sim. GBank gi|5002128|gb|AAD37319.1|AF13517 -reductase1016, 1022(AF135170) dimethyl sulfoxide reductase subunit A [Yersinia pestis]66821436461 (6897, 6898)Novel Protein sim. GBank gi|586489|sp|P38230|QOR_YEAST -reductase1020PROBABLE QUINONE OXIDOREDUCTASE (NADPH: QUINONEREDUCTASE)66934400197 (765, 766)Novel Protein sim. GBank gi|797336 (U19620) - MocA [Agrobacteriumreductase1047tumefaciens]67082483471 (6905, 6906)reductase100167187451956 (1621, 1622)Novel Protein sim. GBank gi|131770|sp|P14132|RS9_DICDI - 40SContains protein domainribosomalprot1023, 1055RIBOSOMAL PROTEIN S9 (40S RIBOSOMAL PROTEIN 1024)(PF00163) - Ribosomal proteinVEGETATIVE SPECIFIC PROTEIN V12)S4/S9 N-terminal domain67223333338 (7195, 7196)Novel Protein sim. GBank gi|1173189|sp|P12340|RR12_MAIZE -Contains protein domainribosomalprot1050CHLOROPLAST 30S RIBOSOMAL PROTEIN S12(PF00164) - Ribosomal proteinS1267357529660 (47, 48)Novel Protein sim. GBank gi|132854|sp|P02387|RL2_ECOLI - 50SContains protein domainribosomalprot1010RIBOSOMAL PROTEIN L2(PF00181) - Ribosomal ProteinsL267420446881 (3675, 3676)Novel Protein sim. GBank gi|132869|sp|P11255|RL2_YERPS - 50SContains protein domainribosomalprot1022RIBOSOMAL PROTEIN L2(PF00181) - Ribosomal ProteinsL267520446870 (971, 972)Novel Protein sim. GBank gi|2500275|sp|P55837|RL16_ACTAC - 50SContains protein domainribosomalprot1022RIBOSOMAL PROTEIN L16(PF00252) - Ribosomal proteinL1667679328715 (899, 900)Novel Protein sim. GBank gi|4506717|ref|NP_001023.1|pRPS2 -Contains protein domainribosomalprot1020, 1024, 1031ribosomal protein S29(PF00253) - Ribosomal proteinS14p/S29e67780235795 (585, 586)Novel Protein sim. GBank gi|4808369|emb|CAB42783.1| - (AL049841)Contains protein domainribosomalprot1020, 1024, 1046, 1051putative 30S ribosomal protein S14 [Streptomyces coelicolor](PF00253) - Ribosomal proteinS14p/S29e67866259277 (3993, 3994)Novel Protein sim. GBank gi|134409|sp|P16336|SECY_BACSU -Contains protein domainribosomalprot1008PREPROTEIN TRANSLOCASE SECY SUBUNIT(PF00256) - Ribosomal proteinL1567928782039 (1319, 1320)Novel Protein sim. GBank gi|132656|sp|P17079|RL12_YEAST - 60SContains protein domainribosomalprot1020RIBOSOMAL PROTEIN L12 (YL15) (YL23)(PF00298) - Ribosomal proteinL1168039506897 (6867, 6868)Novel Protein sim. GBank gi|3915843|sp|O31212|RS2_STRCO - 30SContains protein domainribosomalprot1003RIBOSOMAL PROTEIN S2(PF00318) - Ribosomal protein S268171845367 (3025, 3026)Novel Protein sim. GBank gi|417336|sp|P32905|NABA_YEAST - 40SContains protein domainribosomalprot1020, 1022RIBOSOMAL PROTEIN SA HOMOLOG A (NUCLEIC ACID-BINDING(PF00318) - Ribosomal protein S2PROTEIN NAB1A)68211764585 (4411, 4412)Novel Protein sim. GBank gi|1173281|sp|P44377|RS8_HAEIN - 30SContains protein domainribosomalprot1004RIBOSOMAL PROTEIN S8(PF00410) - Ribosomal protein S868379574512 (1263, 1264)Novel Protein sim. GBank gi|282575|pir||S27686 - tcmR protein -Contains protein domainribosomalprot1028Streptomyces glaucescens(PF00440) - Bacterial regulatoryproteins, tetR family68420117349 (641, 642)Novel Protein sim. GBank gi|4981571|gb|AAD36107.1|AE00176 -Contains protein domainribosomalprot1008(AE001764) transcriptional regulator, TetR family [Thermotoga maritima](PF00440) - Bacterial regulatoryproteins, tetR family68577644732 (2041, 2042)Novel Protein sim. GBank gi|4981571|gb|AAD36107.1|AE00176 -Contains protein domainribosomalprot1020(AE001764) transcriptional regulator, TetR family [Thermotoga maritima](PF00440) - Bacterial regulatoryproteins, tetR family68616777917 (8423, 8424)Novel Protein sim. GBank gi|585949|sp|P21468|RS6_BACSU - 30SContains protein domainribosomalprot1041RIBOSOMAL PROTEIN S6 (BS9)(PF01250) - Ribosomal protein S668716307733 (3357, 3358)Novel Protein sim. GBank gi|730459|sp|P39939|R26B_YEAST - 40SContains protein domainribosomalprot1050RIBOSOMAL PROTEIN S26E-B(PF01283) - Ribosomal proteinS26e68895294566 (4501, 4502)Novel Protein sim. GBank gi|3581854|emb|CAA20810| - (AL031541) 50SContains protein domainribosomalprot1008, 1010, 1021, 1028,ribosomal protein L35 [Streptomyces coelicolor](PF01632) - Ribosomal protein1031, 1035L3568978904615 (7431, 7432)Novel Protein sim. GBank gi|4506635|ref|NP_000985.1|pRPL3 -Contains protein domainribosomalprot1006ribosomal protein L32(PF01655) - Ribosomal proteinL3269071088544 (8127, 8128)Novel Protein sim. GBank gi|4007730|emb|CAA22414| - (AL034447) 50SContains protein domainribosomalprot1026, 1050ribosomal protein L32 [Streptomyces coelicolor](PF01783) - Ribosomal L32pprotein family69180079735 (6531, 6532)Novel Protein sim. GBank gi|129021|sp|P20964|OBG_BACSU - SPO0B-ribosomalprot1024, 1031ASSOCIATED GTP-BINDING PROTEIN69224119415 (879, 880)Novel Protein sim. GBank gi|1321944|emb|CAA66033| - (X97346) FCYXribosomalprot1041[Saccharomyces cerevislae]69382439815 (3063, 3064)Novel Protein sim. GBank gi|133030|sp|P02418|RL9_ECOLI - 50Sribosomalprot1001RIBOSOMAL PROTEIN L969428375899 (1001, 1002)Novel Protein sim. GBank gi|1351010|sp|P48164|RS7_YEAST -ribosomalprot1041PROBABLE 40S RIBOSOMAL PROTEIN S769529017613 (2725, 2726)Novel Protein sim. GBank gi|1352915|sp|P47151|YJ84_YEAST -ribosomalprot1041HYPOTHETICAL 14.0 KD PROTEIN IN NNF1-STE24 INTERGENICREGION69630402257 (2563, 2564)Novel Protein sim. GBank gi|1710566|sp|P51998|RL4P_YEAST -ribosomalprot1006PUTATIVE L4P LIKE RIBOSOMAL PROTEIN69778466595 (5189, 5190)Novel Protein sim. GBank gi|2500312|sp|P96385|RL25_MYCTU -ribosomalprot1006PROBABLE 50S RIBOSOMAL PROTEIN L2569817294099 (4153, 4154)Novel Protein sim. GBank gi|3024573|sp|P56355|RR7_CHLVU -ribosomalprot1006CHLOROPLAST 30S RIBOSOMAL PROTEIN S769956321652 (7115, 7116)Novel Protein sim. GBank gi|3212879 (AC004005) - putative ribosomalribosomalprot1041protein L7 [Arabidopsis thaliana]70086684973 (769, 770)Novel Protein sim. GBank gi|3377797 (AF075597) - Similar to 60Sribosomalprot1016ribosome protein L19; coded for by A. thaliana cDNA T04719; coded forby A. thaliana cDNA H36046; coded for by A. thaliana cDNA T44067;coded for by A. thaliana cDNA T14056; coded for by A. thaliana cDNAR90691 [Ara . . .70181079398 (285, 286)Novel Protein sim. GBank gi|3982|emb|CAA37834| - (X53841)ribosomalprot1001, 1004, 1010, 1015,mitochondrial ribosomal protein YmL8 [Saccharomyces cerevisiae]1020, 1021, 1022, 1024,1028, 1031, 1035, 1036,105170213081834 (6335, 6336)Novel Protein sim. GBank gi|4680695|gb|AAD27737.1|AF13296 -ribosomalprot1022(AF132962) CGI-28 protein [Homo sapiens]70320736808 (2933, 2934)Novel Protein sim. GBank gi|4808405|emb|CAB42737.1| - (AL049826)ribosomalprot1020putative 50S ribosomal protein L9 [Streptomyces coelicolor]70487454340 (6057, 6058)Novel Protein sim. GBank gi|548774|sp|P35685|RL7A_ORYSA - 60Sribosomalprot1015, 1022, 1023RIBOSOMAL PROTEIN L7A70527824087 (6421, 6422)Novel Protein sim. GBank gi|548791|sp|P22354|RM20_YEAST -ribosomalprot1003, 1004, 1022, 1031MITOCHONDRIAL 60S RIBOSOMAL PROTEIN L20 PRECURSOR(YML20)70680082633 (2067, 2068)Novel Protein sim. GBank gi|606342 (U18997) - ORF_o622; readingribosomalprot1020, 1031frame open far upstream of start; possible frameshift, linking to previousORF [Escherichia coli]70711101408 (2085, 2086)Novel Protein sim. GBank gi|2506239|sp|P23852|HEPA_ECOLI - RNAContains protein domainmapolymerase1004POLYMERASE ASSOCIATED PROTEIN (ATP-DEPENDENT HELICASE(PF00271) - Helicases conservedHEPA)C-terminal domain70821398399 (3437, 3438)Novel Protein sim. GBank gi|133370|sp|P17890|RPC8_YEAST - DNA-mapolymerase1020DIRECTED RNA POLYMERASE III 31 KD POLYPEPTIDE (C31)70979834964 (3895, 3896)Novel Protein sim. GBank gi|133418|sp|P19175|RPOB_PSEPU - DNA-mapolymerase1036DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETACHAIN) (RNA POLYMERASE BETA SUBUNIT)71080065066 (5839, 5840)Novel Protein sim. GBank gi|133418|sp|P19175|RPOB_PSEPU - DNA-mapolymerase1007, 1022DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETACHAIN) (RNA POLYMERASE BETA SUBUNIT)71180219418 (4987, 4988)Novel Protein sim. GBank gi|133457|sp|P13433|RPOM_YEAST - DNA-mapolymerase1003, 1004, 1020, 1022,DIRECTED RNA POLYMERASE MITOCHONDRIAL PRECURSOR103171211077563 (2329, 2330)Novel Protein sim. GBank gi|1350855|sp|P19176|RPOC_PSEPU - DNA-mapolymerase1022DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASEBETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT)71380255174 (4695, 4696)Novel Protein sim. GBank gi|1711571|sp|P54000|SUB1_YEAST - SUB1mapolymerase1020PROTEIN71420293171 (445, 446)Novel Protein sim. GBank gi|1938356 (U82763) - RpoD [Xanthomonasmapolymerase1031campestris pv. campestris]71565681535 (1317, 1318)Novel Protein sim. GBank gi|2317257|dbj|BAA21740| - (AB005891) ORF2mapolymerase1022[Platemys spixli]71680420315 (8057, 8058)Novel Protein sim. GBank gi|2500608|sp|Q51561|RPOB_PSEAE - DNA-mapolymerase1023DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETACHAIN) (RNA POLYMERASE BETA SUBUNIT)7179906510 (1205, 1206)Novel Protein sim. GBank gi|2506239|sp|P23852|HEPA_ECOLI - RNAmapolymerase1002POLYMERASE ASSOCIATED PROTEIN (ATP-DEPENDENT HELICASEHEPA)71880026079 (1373, 1374)Novel Protein sim. GBank gi|3249729 (AF071795) - RNA polymerasemapolymerase1003, 1004, 1008, 1010,sigma-like factor [Streptomyces bluensis]1022, 103171979835134 (2757, 2758)Novel Protein sim. GBank gi|3549149 (AF087812) - RNA polymerase B-mapolymerase1036subunit [Legionella Pneumophila]72088094878 (3445, 3446)Novel Protein sim. GBank gi|3660649 (U86688) - RNA polymerase beta-mapolymerase1022subunit [Coxiella bumetil]72121147471 (4015, 4016)Novel Protein sim. GBank gi|3878613|emb|CAB05571| - (Z83117) similarmapolymerase1055to reverse transcriptase [Caenorhabditis elegans]72230654004 (6891, 6892)Novel Protein sim. GBank gi|3914808|sp|O35134|RPA1_MOUSE - DNA-mapolymerase1008DIRECTED RNA POLYMERASE I LARGEST SUBUNIT (RNAPOLYMERASE I 194 KD SUBUNIT) (RPA194)7235498584 (4869, 4870)Novel Protein sim. GBank gi|401019|sp|P30761|RPOC_MYCLE - DNA-mapolymerase1055DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASEBETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT)72420447155 (8529, 8530)Novel Protein sim. GBank gi|401019|sp|P30761|RPOC_MYCLE - DNA-mapolymerase1022DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASEBETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT)72519882932 (6519, 6520)Novel Protein sim. GBank gi|4539660|gb|AAD22153.1|AF06128 -mapolymerase1001(AF061282) polyprotein [Sorghum bicolor]72613528587 (2445, 2446)Novel Protein sim. GBank gi|5305777|gb|AAD41810.1|AF14409 -mapolymerase1022(AF144091) sigma factor SigH [Mycobacterium smegmatis]72730263251 (2035, 2036)Novel Protein sim. GBank gi|57255|emb|CAA48786| - (X69021)mapolymerase1006senescence marker protein-30 [Rattus norvegicus]72821662065 (6459, 6460)Novel Protein sim. GBank gi|3136057|emb|CAA19116| - (AL023592) actinContains protein domainstruct1008like protein [Schizosaccharomyces pombe](PF00022) - Actin72954968624 (6467, 6468)Novel Protein sim. GBank gi|1839052|emb|CAA69604| - (Y08296)Contains protein domainstruct1034integumentary mucin B.1 [Xenopus laevis](PF00084) - Sushi domain (SCRrepeat)73052559797 (6733, 6734)Novel Protein sim. GBank gi|285329|pir||A42112 - mucin-like peptide MLPContains protein domainstruct1020, 10222677 - rat(PF00093) - von Willebrand factortype C domain73180431450 (1217, 1218)Novel Protein sim. GBank gi|1703701|bbs|178462 - KRP5 = kinesin-relatedContains protein domainstruct1002, 1015, 1022, 1035,protein [rats, testes, Peptide Partial, 167 aa](PF00225) - Kinesin motor1036domain73280053179 (1435, 1436)Novel Protein sim. GBank gi|2062752 (U92845) - kinesin motor proteinContains protein domainstruct1008[Ustilago maydis](PF00225) - Kinesin motordomain73310247640 (111, 112)Novel Protein sim. GBank gi|3413892|dbj|BAA32310| - (AB007934)Contains protein domainstruct1036KIAA0465 protein [Homo sapiens](PF00435) - Spectrin repeat73480419225 (435, 436)Novel Protein sim. GBank gi|127736|sp|P19524|MYS2_YEAST - MYOSINContains protein domainstruct1004, 1006, 1010, 10232 ISOFORM(PF00612) - IQ calmodulinbinding motif73510199185 (7473, 7474)Novel Protein sim. GBank gi|311159 (L16243) - synaptobrevinContains protein domainstruct1004[Saccharomyces cerevisiae](PF00957) - Synaptobrevin73678903874 (7203, 7204)Novel Protein sim. GBank gi|1017427|emb|CAA62189| - (X90569) elasticstruct1041titin [Homo sapiens]73711131571 (7401, 7402)Novel Protein sim. GBank gi|1079451|pir||A55463 - tropomodulin, skeletalstruct1022muscle - chicken73895010667 (1195, 1196)Novel Protein sim. GBank gi|1091582|prf||2021268A - elongation factorstruct1002, 1004, 1010, 1015,[Streptomyces coelicolor]1022, 1031, 1036, 104673932149138 (611, 612)Novel Protein sim. GBank gi|112958|sp|P18091|AACT_DROME - ALPHA-struct1002, 1041, 1051ACTININ, SARCOMERIC (F-ACTIN CROSS LINKING PROTEIN)74080239644 (7415, 7416)Novel Protein sim. GBank gi|2143863|pir||B57431 - myosin-binding C-struct1003, 1004protein - rat (fragment)74119464113 (177, 178)Novel Protein sim. GBank gi|2808506|emb|CAA12536.1| - (AJ225561)struct1021ExsG protein [Sinorhizobium meliloti]74227843681 (2955, 2956)Novel Protein sim. GBank gi|285329|pir||A42112 - mucin-like peptide MLPstruct1003, 10222677 - rat74380252997 (8005, 8006)Novel Protein sim. GBank gi|2950347|emb|CAA04492| - (AJ001038) M-struct1015, 1020protein [Mus musculus]74420372385 (4239, 4240)Novel Protein sim. GBank gi|3649753|emb|CAB11102.1| - (Z98547)struct1020predicted using hexExon; MAL3P3.2 (PFC0330w), PDZ domain protein,len: 700 aa [Plasmodium falciparum]74523206163 (1537, 1538)Novel Protein sim. GBank gi|399308|sp|Q01377|CSP1_CORGL - PS1struct1024PROTEIN PRECURSOR74688085671 (5081, 5082)Novel Protein sim. GBank gi|4503581|ref|NP_001969.1|pEPB4 -struct1020erythrocyte membrane protein band 4.9 (dematin)74785801312 (947, 948)struct102374878680455 (7527, 7528)Novel Protein sim. GBank gi|1711601|sp|P49889|SUO3_RAT -sulfotransferase1007ESTROGEN SULFOTRANSFERASE, ISOFORM 3 (EST-3)(SULFOTRANSFERASE, ESTROGEN-PREFERRING) (ESTRONESULFOTRANSFERASE)74956465618 (5803, 5804)Novel Protein sim. GBank gi|3449294|dbj|BAA32462| - (AB011532)Contains protein domainsynthase1015MEGF6 [Rattus norvegicus](PF00008) - EGF-like domain75080105992 (3361, 3362)Novel Protein sim. GBank gi|477532|pir||A49175 - Motch B protein -Contains protein domainsynthase1036mouse (fragment)(PF00008) - EGF-like domain75137799246 (6091, 6092)Novel Protein sim. GBank gi|1493807 (U35068) - PtxR [PseudomonasContains protein domainsynthase1010aeruginosa](PF00126) - Bacterial regulatoryhelix-turn-helix protein, lysR family75280086821 (1281, 1282)Novel Protein sim. GBank gi|1881244|dbj|BAA19271| - (AB001488)Contains protein domainsynthase1031SIMILAR TO PYRUVATE OXIDASE AND ACETOLACTATE SYNTHASE.(PF00205) - Thiamine[Bacillus subtilis]pyrophosphate enzymes75380248088 (4907, 4908)Novel Protein sim. GBank gi|1881244|dbj|BAA19271| - (AB001488)Contains protein domainsynthase1004, 1020SIMILAR TO PYRUVATE OXIDASE AND ACETOLACTATE SYNTHASE.(PF00205) - Thiamine[Bacillus subtilis]pyrophosphate enzymes75420292172 (1615, 1616)Novel Protein sim. GBank gi|114580|sp|P00831|ATPD_ECOLI - ATPContains protein domainsynthase1031SYNTHASE DELTA CHAIN(PF00213) - ATP synthase delta(OSCP) subunit75511356059 (6911, 6912)Novel Protein sim. GBank gi|173045 (K01386) - anthranilate synthaseContains protein domainsynthase1055Component II: Indole-3-glycerol phosphate synthase (TRP3)(PF00218) - Indole-3-glycerol[Saccharomyces cerevisiae]phosphate synthases75686685863 (5129, 5130)Novel Protein sim. GBank gi|3722219|gb|AAC63500.1| - (AF054585)Contains protein domainsynthase1024, 1026indoleglycerol phosphate synthase [Streptomyces coelicolor](PF00218) - Indole-3-glycerolphosphate synthases75720465640 (1757, 1758)Novel Protein sim. GBank gi|2126911|pir||40381 - citrate synthase II - Contains protein domainsynthase1008Bacillus subtilis(PF00285) - Citrate synthase75838335891 (8183, 8184)Novel Protein sim. GBank gi|5441892|dbj|BAA82390.1| - (AP000367)Contains protein domainsynthase1006ESTs C96653(C10531), C96654(C10531), C28571(C61641) correspond to(PF00285) - Citrate synthasea region of the predicted gene.; Similar to citrate synthetase. (AC004521)[Oryza sativa]75920294369 (7221, 7222)Novel Protein sim. GBank gi|1750387 (U81259) - carbamoylphosphateContains protein domainsynthase1031synthetase large subunit [Pseudomonas aeruginosa](PF00289) - Carbamoyl-phosphate synthase (CPSase)76094631714 (5533, 5534)Novel Protein sim. GBank gi|417496|sp|P33158|PMGY_STRCO - Contains protein domainsynthase1028PHOSPHOGLYCERATE MUTASE (PHOSPHOGLYCEROMUTASE)(PF00300) - Phosphoglycerate(PGAM) (BPG-DEPENDENT PGAM)mutase family76117891833 (6613, 6614)Novel Protein sim. GBank g|136618|sp|P06785|TYSY_YEAST - Contains protein domainsynthase1021THYMIDYLATE SYNTHASE (TS)(PF00303) - Thymidylatesynthase76271095141 (3041, 3042)Novel Protein sim. GBank gi|3449252|emb|CAA20396| - (AL031317)Contains protein domainsynthase1050glucosamine-fructose-6-phosphate aminotransferase [Streptomyces(PF00310) - Glutaminecoelicolor]amidotransferases class-II76382471218 (4409, 4410)Novel Protein sim. GBank gi|114954|sp|P15703|BGL2_YEAST - GLUCANContains protein domainsynthase1001, 1003, 1004, 1006,1,3-BETA-GLUCOSIDASE PRECURSOR (EXO-1,3-BETA-GLUCANASE)(PF00332) - Glycosyl hydrolases1007,1008, 1010, 1015,(GP29)family 171020, 1022, 1035, 10417649537334 (973, 974)Novel Protein sim. GBank gi|3927835 (AC005727) - similar toContains protein domainsynthase1020Streptomyces PapA [Arabidopsis thaliana](PF00425) - chorismate bindingenzyme76579968318 (8287, 8288)Novel Protein sim. GBank gi|477849|pir||B48967 - anthranilate synthaseContains protein domainsynthase1020(EC 4.1.3.27) component I - Corynebacterium glutamicum(PF00425) - chorismate bindingenzyme76682052429 (7033, 7034)Novel Protein sim. GBank gi|1170939|sp|P43282|METM_LYCES - S-Contains protein domainsynthase1014, 1024ADENOSYLMETHIONINE SYNTHETASE 3 (METHIONINE(PF00438) - S-ADENOSYLTRANSFERASE 3) (ADOMET SYNTHETASE 3)adenosylmethionine synthetase76780043700 (3103, 3104)Novel Protein sim. GBank gi|2498499|sp|P56060|KDSA_HELPY - 2-Contains protein domainsynthase1050DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (PHOSPHO-2-(PF00484) - Prokaryotic-typeDEHYDRO-3-DEOXYOCTONATE ALDOLASE) (3-DEOXY-D-MANNO-carbonic anhydrasesOCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE) (KDO 8-PSYNTHASE)76879562866 (3031, 3032)Novel Protein sim. GBank gi|4884830|gb|AAD31824.1|AF13119 - Contains protein domainsynthase1021(AF131199) porphobilinogen deaminase [Pseudomonas syringae pv.(PF00487) - Fatty acid desaturasesyringae]76911394712 (5465, 5466)Novel Protein sim. GBank gi|3660334|pdb|2GAR| - A Ph-DependentContains protein domainsynthase1020Stabilzation Of An Active Site Loop Observed From Low And High Ph(PF00551) - Formyl transferaseCrystal Structures Of Mutant Monomeric Glycinamide RibonucleotideTransformylase77078459786 (1771, 1772)Novel Protein sim. GBank gi|119783|sp|P14926|FABB_ECOLI - 3-Contains protein domainsynthase1024OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE I (BETA-KETOACYL(PF00553) - Cellulose bindingACP SYNTHASE I) (KAS I)domain77180252645 (2153, 2154)Novel Protein sim. GBank gi|1144520 (U34956) - Contains protein domainsynthase1004, 1008, 1021, 1022phosphoribosylformylglycinamidine synthase [Mycobacterium(PF00586) - AIR synthase relatedtuberculosis]protein77213085297 (8811, 8812)Novel Protein sim. GBank gi|2494764|sp|Q50729|GUAA_MYCTU - GMPContains protein domainsynthase1010, 1022SYNTHASE (GLUTAMINE-HYDROLYZING) (GLUTAMINE(PF00958) - GMP synthase CAMIDOTRANSFERASE) (GMP SYNTHETASE)terminal domain77379846152 (4969, 4970)Novel Protein sim. GBank gi|2687651 (AF036932) - 3-dehydroquinateContains protein domainsynthase1031dehydratase [Corynebacterium glutamicum](PF01220) - Dehydroquinaseclass II77480235940 (3679, 3680)Novel Protein sim. GBank gi|115944|sp|P06182|CCHL_YEAST - Contains protein domainsynthase1004, 1020CYTOCHROME C HEME LYASE (CCHL) (HOLOCYTOCHROME-C(PF01265) - Cytochrome c/c1SYNTHASE)heme lyase77580040519 (7139, 7140)Novel Protein sim. GBank gi|461698|sp|P33322|CBF5_YEAST - Contains protein domainsynthase1002, 1003CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5(PF01472) - PUA domain(CENTROMERE-BINDING FACTOR 5) (NUCLEOLAR PROTEIN CBF5)(P64′)77680250627 (7905, 7906)Novel Protein sim. GBank gi|2687633 (AF035756) - 2-dehydro-3-Contains protein domainsynthase1003, 1006, 1008, 1020,deoxyphosphoheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate(PF01474) - Class-II DAHP1022, 1024, 1026, 1031,aldolase [Streptomyces sp.]synthetase family105077720438343 (3123, 3124)Novel Protein sim. GBank gi|1850941 (U54794) - Orp [PseudomonasContains protein domainsynthase1008aeruginosa](PF01509) - TruB familypseudouridylate synthase (Nterminal domain)77880216341 (7071, 7072)Novel Protein sim. GBank gi|116382|sp|P14180|CHS2_YEAST - CHITINContains protein domainsynthase1001, 1002, 1003, 1004,SYNTHASE 2 (CHITIN-UDP ACETYL-GLUCOSAMINYL TRANSFERASE(PF01644) - Chitin synthase1006, 1020, 1021, 1022,2)1036, 104177966770266 (4779, 4780)Novel Protein sim. GBank gi|114179|sp|P07637|AROA_SALTY - 3-synthase1046PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE (5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE) (EPSPSYNTHASE)78086471563 (573, 574)Novel Protein sim. GBank gi|114421|sp|P17614|ATP2_NICPL - ATPsynthase1017SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR78195288987 (1877, 1878)Novel Protein sim. GBank gi|1144520 (U34956) - synthase1002, 1003, 1004, 1008,phosphoribosylformylglycinamidine synthase [Mycobacterium1020, 1022, 1031tuberculosis]78278676796 (5225, 5226)Novel Protein sim. GBank gi|1144522 (U34957) - synthase1006phosphoribosylaminoimidazolesuccinocarboxamide synthase[Mycobacterium tuberculosis]78379378861 (8781, 8782)Novel Protein sim. GBank gi|114511|sp|P19482|ATPA_BOVIN - ATPsynthase1020, 1022, 1024SYNTHASE ALPHA CHAIN, LIVER ISOFORM, MITOCHONDRIALPRECURSOR7848489430 (781, 782)Novel Protein sim. GBank gi|115208|sp|P07245|C1TC_YEAST - C-1-synthase1020TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC (C1-THFSYNTHASE) (METHYLENETETRAHYDROFOLATE DEHYDROGENASE/METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE/FORMYLTETRAHYDROFOLATE SYNTHETASE78578793853 (2391, 2392)Novel Protein sim. GBank gi|115208|sp|P07245|C1TC_YEAST - C-1-synthase1025, 1041TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC (C1 -THFSYNTHASE) (METHYLENETETRAHYDROFOLATE DEHYDROGENASE/METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE/FORMYLTETRAHYDROFOLATE SYNTHETASE78678760458 (7255, 7256)Novel Protein sim. GBank gi|115208|sp|P07245|C1TC_YEAST - C-1-synthase1041TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC (C1-THFSYNTHASE) (METHYLENETETRAHYDROFOLATE DEHYDROGENASE/METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE/FORMYLTETRAHYDROFOLATE SYNTHETASE78778523866 (7525, 7526)Novel Protein sim. GBank gi|115620|sp|P25993|CARA_BACSU - synthase1006, 1024CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SPECIFIC,SMALL CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASEGLUTAMINE CHAIN)78815019489 (411, 412)Novel Protein sim. GBank gi|1169215|sp|P43797|DAPA_HAEIN - synthase1051DIHYDRODIPICOLINATE SYNTHASE (DHDPS)78978778172 (3465, 3466)Novel Protein sim. GBank gi|1170917|sp|P44612|MEND_HAEIN - 2-synthase1007SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATESYNTHASE (SHCHC SYNTHASE)/2-OXOGLUTARATEDECARBOXYLASE (ALPHA-KETOGLUTARATE DECARBOXYLASE)(KDC)79013085914 (3913, 3914)Novel Protein sim. GBank gi|1172792|sp|P44341|PYRG_HAEIN - CTPsynthase1020SYNTHASE (UTP-AMMONIA LIGASE) (CTP SYNTHETASE)79125256587 (8259, 8260)Novel Protein sim. GBank gi|1174692|sp|P45837|THRC_MYCLE - synthase1002PROBABLE THREONINE SYNTHASE7929873395 (5667, 5668)Novel Protein sim. GBank gi|1175639|sp|P44433|RLUC_HAEIN - synthase1041RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C(PSEUDOURIDYLATE SYNTHASE) (URACIL HYDROLYASE)79382063898 (1737, 1738)Novel Protein sim. GBank gi|119832|sp|P19097|FAS2_YEAST - FATTYsynthase1001, 1002, 1003, 1004,ACID SYNTHASE, SUBUNIT ALPHA [CONTAINS: EC 1.1.1.100; EC1006, 1007, 1008, 1010,2.3.1.41]1014, 1015, 1020, 1021,1022, 1024, 1025, 1028,1031, 1035, 1036, 1041,104679480241674 (8587, 8588)Novel Protein sim. GBank gi|123330|sp|P22791|HMCM_RAT - synthase1003, 1022HYDROXYMETHYLGLUTARYL-COA SYNTHASE, MITOCHONDRIALPRECURSOR (HMG-COA SYNTHASE) (3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE)79565460215 (6121, 6122)Novel Protein sim. GBank gi|1346930|sp|P48795|PYRC_LACLE - synthase1014DIHYDROOROTASE (DHOASE)79679862380 (8803, 8804)Novel Protein sim. GBank gi|135108|sp|P15189|SYE_RHIME - synthase1010, 1028GLUTAMYL-TRNA SYNTHETASE (GLUTAMATE-TRNA LIGASE)(GLURS)79780250273 (6225, 6226)Novel Protein sim. GBank gi|1360669|pir||CGHU1V - collagen alpha 1(V)synthase1050chain precursor - human79878389393 (7121, 7122)Novel Protein sim. GBank gi|136753|sp|P23337|UGS1_YEAST - synthase1020GLYCOGEN (STARCH) SYNTHASE, ISOFORM 17998365947 (2349, 2350)Novel Protein sim. GBank gi|1709961|sp|P53529|PYRG_MYCLE - CTPsynthase1022SYNTHASE (UTP-AMMONIA LIGASE) (CTP SYNTHETASE)80088095289 (905, 906)Novel Protein sim. GBank gi|1731277|sp|Q10807|YX12_MYCTU - synthase1031HYPOTHETICAL 32.0 KD PROTEIN CY274.12C8013377208 (3279, 3280)Novel Protein sim. GBank gi|1781097|emb|CAB06231| - (Z83864) gltBsynthase1010[Mycobacterium tuberculosis]80219887737 (1531, 1532)Novel Protein sim. GBank gi|2326953 (U55242) - alpha-D-glucose-1-synthase1001phosphate thymidylyltransferase [Mycobacterium tuberculosis]80310871801 (5453, 5454)Novel Protein sim. GBank gi|2384564 (U70470) - beta-ketoacyl-ACPsynthase1028synthase I [Pseudomonas aeruginosa]80435893282 (1313, 1314)Novel Protein sim. GBank gi|2493569|sp|Q50611|PGSA_MYCTU - synthase1050PUTATIVE CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYL-TRANSFERASE(PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE) (PGPSYNTHASE)8059398464 (7211, 7212)Novel Protein sim. GBank gi|2493894|sp|Q59966|SRPG_SYNP7 - synthase1015CYSTEINE SYNTHASE, PLASMID (O-ACETYLSERINESULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE)80633202587 (2411, 2412)Novel Protein sim. GBank gi|2498245|sp|Q51983|CMTG_PSEPU - 4-synthase1024HYDROXY-2-OXOVALERATE ALDOLASE (HOA)80720446202 (8103, 8104)Novel Protein sim. GBank gi|2501040|sp|O05814|SYP_MYCTU - synthase1022PROLYL-TRNA SYNTHETASE (PROLINE-TRNA LIGASE) (PRORS)80879830747 (1181, 1182)Novel Protein sim. GBank gi|2582531 (AF026444) - 2-isopropylmalatesynthase1025, 1036synthase [Streptomyces coelicolor]80980065038 (1617, 1618)Novel Protein sim. GBank gi|2582531 (AF026444) - 2-isopropylmalatesynthase1022, 1024, 1031synthase [Streptomyces coelicolor]81070949027 (3945, 3946)Novel Protein sim. GBank gi|2582531 (AF026444) - 2-isopropylmalatesynthase1026synthase [Streptomyces coelicolor]81180053048 (2255, 2256)Novel Protein sim. GBank gi|2661608|emb|CAA15716| - (AL009197)synthase1003hypothetical ctp synthase [Schizosaccharomyces pombe]81280507844 (8917, 8918)Novel Protein sim. GBank gi|2746079 (AF015310) - BTH1 [Brassicasynthase1003, 1004, 1010, 1015napus]81380046498 (7427, 7428)Novel Protein sim. GBank gi|2791487|emb|CAA16024| - (AL021246) folCsynthase1002, 1004, 1006, 1015,[Mycobacterium tuberculosis]102481479168037 (6815, 6816)Novel Protein sim. GBank gi|2829688|sp|P80608|CYSK_MAlZE - synthase1028, 1047CYSTEINE SYNTHASE (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE)81578360263 (2257, 2258)Novel Protein sim. GBank gi|2916867|emb|CAA17615.1| - (AL022004)synthase1006purM [Mycobacterium tuberculosis]81632735522 (7325, 7326)Novel Protein sim. GBank gi|2924399|emb|CAA12103| - (AJ224731)synthase1001peptide synthetase [Chroococcus dispersus]81727978092 (3551, 3552)Novel Protein sim. GBank gi|2950419|emb|CAA17864.1| - (AL022076)synthase1004pks13 [Mycobacterium tuberculosis]81820457035 (4371, 4372)Novel Protein sim. GBank gi|3122391|sp|O33465|METH_PSEPU - 5-synthase1008METHYLTETRAHYDROFOLATE-HOMOCYSTEINEMETHYLTRANSFERASE (METHIONINE SYNTHASE, VITAMIN-B12DEPENDENT ISOZYME) (MS)81933206031 (6163, 6164)Novel Protein sim. GBank gi|3378523|emb|CAA08867| - (AJ009832)synthase1004, 1024cyclomaltodextrinase glucanotransferase [Thermotoga neapolitana]82011073229 (4517, 4518)Novel Protein sim. GBank gi|3386354 (AF074705) - pyochelin synthetasesynthase1031[Pseudomonas aeruginosa]82178787522 (7529, 7530)Novel Protein sim. GBank gi|3913105|sp|O50468|AROB_NEIGO - 3-synthase1020DEHYDROQUINATE SYNTHASE82278459905 (1775, 1776)Novel Protein sim. GBank gi|3915158|sp|O06322|TRUA_MYCTU - TRNAsynthase1024PSEUDOURIDINE SYNTHASE A (PSEUDOURIDYLATE SYNTHASE I)(PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE)82335892891 (8109, 8110)Novel Protein sim. GBank gi|400182|sp|Q02141|LEU1_LACLA - 2-synthase1050ISOPROPYLMALATE SYNTHASE (ALPHA-ISOPROPYLMALATESYNTHASE) (ALPHA-IPM SYNTHETASE)82429188808 (8993, 8994)Novel Protein sim. GBank gi|4467263|emb|CAB37588| - (AL035569)synthase1003, 1004, 1020, 1024,acetolactate synthase [Streptomyces coelicolor]1031, 1036, 105582517282497 (5223, 5224)Novel Protein sim. GBank gi|4521156|dbj|BAA75929.1| - (AB024708)synthase1008, 1036glutamine 2-oxoglutarate aminotransferase large subunit[Corynebacterium glutamicum]82680248428 (5475, 5476)Novel Protein sim. GBank gi|4521156|dbj|BAA75929.1| - (AB024708)synthase1004, 1008, 1020, 1021,glutamine 2-oxoglutarate aminotransferase large subunit1022, 1031, 1035[Corynebacterium glutamicum]82779194674 (2913, 2914)Novel Protein sim. GBank gi|460064|emb|CAA49847| - (X70397) GMPsynthase1022synthase [Saccharomyces cerevisiae]82895201692 (7021, 7022)Novel Protein sim. GBank gi|461586|sp|Q06185|ATPJ_MOUSE - ATPsynthase1022, 1035SYNTHASE E CHAIN, MITOCHONDRIAL82937036243 (6479, 6480)Novel Protein sim. GBank gi|4633807|gb|AAD26859.1|AF12779 - synthase1010(AF127795) trehalose biosynthetic enzyme TreY [Rhizobiumleguminosarum bv. viciae]83094647887 (6153, 6154)Novel Protein sim. GBank gi|536873 (M34549) - POL3 gene productsynthase1001, 1004, 1006, 1007,[Saccharomyces cerevisiae]1008, 1010, 1015, 1020,1021, 1022, 1024, 1027,1028, 1031, 1035, 105183186474099 (6545, 6546)Novel Protein sim. GBank gi|541849|pir||JQ2340 - anthranilate synthasesynthase1031, 1051(EC 4.1.3.27) beta chain - Arabidopsis thaliana83279572886 (2509, 2510)Novel Protein sim. GBank gi|543955|sp|Q05597|CBIP_SALTY - synthase1015COBYRIC ACID SYNTHASE83379473028 (1445, 1446)Novel Protein sim. GBank gi|547900|sp|Q02251|MCAS_MYCBO - synthase1020MYCOCEROSIC ACID SYNTHASE83429499363 (1559, 1560)Novel Protein sim. GBank gi|549690|sp|P36087|YKH0_YEAST - synthase1007HYPOTHETICAL 19.8 KD PROTEIN IN LHS1-NUP100 INTERGENICREGION83580503288 (1547, 1548)Novel Protein sim. GBank gi|585097|sp|P10377|ENTC_ECOLI - synthase1002, 1010ISOCHORISMATE SYNTHASE ENTC83679582160 (2947, 2948)Novel Protein sim. GBank gi|585763|sp|Q07296|PUR7_STRPN - synthase1028PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDESYNTHASE (SAICAR SYNTHETASE)83712891628 (4683, 4684)Novel Protein sim. GBank gi|628702|pir||S45213 - glutamate-tRNA ligasesynthase1028homolog - Escherichia coli83879829998 (699, 700)Novel Protein sim. GBank gi|728896|sp|P39198|AROC_VIBAN - synthase1002CHORISMATE SYNTHASE (5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PHOSPHOLYASE)83929005610 (8539, 8540)Novel Protein sim. GBank gi|731489|sp|P39965|SYPC_YEAST - synthase1002, 1015PROBABLE PROLYL-TRNA SYNTHETASE, CYTOPLASMIC (PROLINE-TRNA LIGASE) (PRORS)84020751472 (221, 222)Novel Protein sim. GBank gi|731699|sp|P38820|YHR1_YEAST - synthase1020, 1022, 1041HYPOTHETICAL 49.4 KD PROTEIN IN CDC12-ORC6 INTERGENICREGION84178082227 (2943, 2944)Novel Protein sim. GBank gi|887839 (U28375) - ORF_o182 [Escherichiasynthase1026coli]84279606198 (5693, 5694)Novel Protein sim. GBank gi|135753|sp|P27796|THIK_YEAST - 3-thiolase1004, 1020KETOACYL-COA THIOLASE PEROXISOMAL PRECURSOR (BETA-KETOTHIOLASE) (ACETYL-COA ACYLTRANSFERASE)(PEROXISOMAL 3-OXOACYL-COA THIOLASE)8439383851 (425, 426)Novel Protein sim. GBank gi|135762|sp|P13437|THIM_RAT - 3-thiolase1015KETOACYL-COA THIOLASE MITOCHONDRIAL (BETA-KETOTHIOLASE) (ACETYL-COA ACYLTRANSFERASE)(MITOCHONDRIAL 3-OXOACYL-COA THIOLASE)84470336380 (3653, 3654)Novel Protein sim. GBank gi|3063884|emb|CAA1 8569| - (AL022486)thiolase1007putative acetyltransferase [Mycobacterium leprae]84517300401 (7049, 7050)Novel Protein sim. GBank gi|477788|pir||B48376 - beta-thiolase1041ketothiolase = poly(3-hydroxyalkanoate) synthase - Thiocystis violacea84633202597 (5463, 5464)Novel Protein sim. GBank gi|1617235|emb|CAA69629| - (Y08343)tm71024olfactory receptor [Xenopus laevis]84787893328 (589, 590)Novel Protein sim. GBank gi|3289999 (AC005255) - BC85395_1 [Homotm71023sapiens]84886474087 (4457, 4458)Novel Protein sim. GBank gi|4512653|gb|AAD21708.1| - (AC007048)tnfreceptor1051unknown protein [Arabidopsis thaliana]84925258728 (2465, 2466)Novel Protein sim. GBank gi|4759086|ref|NP_004883.1|pSEC2 - vesicletraffic1002, 1024trafficking protein sec22b85080502259 (2775, 2776)Novel Protein sim. GBank gi|586350|sp|P38151|YB83_YEAST - Contains protein domaintranscriptfactor1002, 1004, 1006, 1010,HYPOTHETICAL 45.8 KD PROTEIN IN PCS60-ABD1 INTERGENIC(PF00013) - KH domain1015, 1023, 1036, 1041REGION85180043835 (1919, 1920)Novel Protein sim. GBank gi|115157|sp|P16574|BVGA_BORPE - Contains protein domaintranscriptfactor1015, 1020, 1031VIRULENCE FACTORS PUTATIVE POSITIVE TRANSCRIPTION(PF00072) - Response regulatorREGULATOR BVGAreceiver domain85295198193 (5939, 5940)Novel Protein sim. GBank gi|4218542|emb|CAA09631.1| - (AJ011500)Contains protein domaintranscriptfactor1001, 1004, 1010, 1015,putative two-component response regulator [Streptomyces violaceoruber](PF00072) - Response regulator1019, 1035receiver domain85386668923 (8195, 8196)Novel Protein sim. GBank gi|2501714|sp|Q61967|ZF90_MOUSE - ZINCContains protein domaintranscriptfactor1006, 1024, 1035, 1039FINGER PROTEIN ZFP-90 (ZINC FINGER PROTEIN NK10)(PF00096) - Zinc finger, C2H2type85480438888 (4761, 4762)Novel Protein sim. GBank gi|538413 (L36315) - zinc finger protein [MusContains protein domaintranscriptfactor1035musculus](PF00096) - Zinc finger, C2H2type85595294772 (675, 676)Novel Protein sim. GBank gi|4507081|ref|NP_003066.1|pSMAR - Contains protein domaintranscriptfactor1022SWI/SNF related, matrix associated, actin dependent regulator of(PF00249) - Myb-like DNA-chromatin, subfamily c, member 2binding domain85638923775 (1681, 1682)Novel Protein sim. GBank gi|1170943|sp|P45128|MFD_HAEIN - Contains protein domaintranscriptfactor1006, 1020, 1036TRANSCRIPTION-REPAIR COUPLING FACTOR (TRCF)(PF00271) - Helicases conservedC-terminal domain85779618896 (7835, 7836)Novel Protein sim. GBank gi|2131747|pir||S64835 - hypothetical proteinContains protein domaintranscriptfactor1004, 1015, 1036YLR013w - yeast (Saccharomyces cerevisiae)(PF00320) - GATA zinc finger85878459290 (8247, 8248)Novel Protein sim. GBank gi|130805|sp|P20053|PR04_YEAST - U4/U6Contains protein domaintranscriptfactor1024SMALL NUCLEAR RIBONUCLEOPROTEIN PRP4(PF00400) - WD domain, G-betarepeat85920292176 (2543, 2544)Novel Protein sim. GBank gi|1353001|sp|P47025|YJL2_YEAST - Contains protein domaintranscriptfactor1031HYPOTHETICAL 80.0 KD TRP-ASP REPEATS CONTAINING PROTEIN(PF00400) - WD domain, G-betaIN ASF1-CCT7 INTERGENIC REGIONrepeat86078782931 (643, 644)Novel Protein sim. GBank gi|416288|dbj|BAA03957| - (D16506) ORF1Contains protein domaintranscriptfactor1020, 1036[Saccharomyces cerevisiae](PF00400) - WD domain, G-betarepeat86179876409 (8359, 8360)Novel Protein sim. GBank gi|128183|sp|P11633|NHPB_YEAST - Contains protein domaintranscriptfactor1003, 1015, 1020NONHISTONE CHROMOSOMAL PROTEIN 6B(PF00505) - HMG (high mobilitygroup) box86236623022 (4819, 4820)Novel Protein sim. GBank gi|548719|sp|Q04863|RELB_MOUSE - Contains protein domaintranscriptfactor1031TRANSCRIPTION FACTOR RELB(PF00554) - Rel homologydomain (RHD).86398753100 (201, 202)Novel Protein sim. GBank gi|107909|pir||JC1235 - transcription factortranscriptfactor1055BTF3a - human86439562855 (5267, 5268)Novel Protein sim. GBank gi|114814|sp|P14164|BAF1_YEAST - transcriptfactor1004, 1020TRANSCRIPTION FACTOR BAF1 (ARS BINDING FACTOR 1) (PROTEINABF1) (BIDIRECTIONALLY ACTING FACTOR) (SFB-B) (DNAREPLICATION ENHANCER-BINDING PROTEIN OBF1)86521425075 (855, 856)Novel Protein sim. GBank gi|128915|sp|P16921|NUSG_ECOLI - transcriptfactor1006, 1020TRANSCRIPTION ANTITERMINATION PROTEIN NUSG86627806915 (2985, 2986)Novel Protein sim. GBank gi|3914014|sp|P96380|MFD_MYCTU - transcriptfactor1020TRANSCRIPTION-REPAIR COUPLING FACTOR (TRCF)86720457127 (4899, 4900)Novel Protein sim. GBank gi|3914014|sp|P96380|MFD_MYCTU - transcriptfactor1008, 1020, 1031TRANSCRIPTION-REPAIR COUPLING FACTOR (TRCF)86813526955 (2271, 2272)Novel Protein sim. GBank gi|416737|sp|P24813|CAD1_YEAST - transcriptfactor1022TRANSCRIPTION FACTOR CAD1 (YAP-2 PROTEIN)86929246127 (5381, 5382)Novel Protein sim. GBank gi|548394|sp|P36264|NUSG_STACA - transcriptfactor1003, 1006, 1014TRANSCRIPTION ANTITERMINATION PROTEIN NUSG87080234879 (2501, 2502)Novel Protein sim. GBank gi|549671 |sp|P36093|PHD1_YEAST - transcriptfactor1002, 1003, 1025PUTATIVE TRANSCRIPTION FACTOR PHD187178674899 (7025, 7026)Novel Protein sim. GBank gi|606946 (U13878) - neural-restrictive silencertranscriptfactor1015factor [Mus musculus]87270948976 (7963, 7964)Novel Protein sim. GBank gi|1864151 (U88875) - hypoxanthine-guanineContains protein domaintransferase1026phosphoribosyl transferase [Mycobacterium avium](PF00156) - Phosphoribosyltransferase domain87339507571 (7337, 7338)Novel Protein sim. GBank gi|129273|sp|P16964|OTCX_STRPY - Contains protein domaintransferase1004PROBABLE ORNITHINE CARBAMOYLTRANSFERASE (OTC)(PF00185) - Aspartate/omithinecarbamoyltransferase87480484113 (6211, 6212)Novel Protein sim. GBank gi|2764612|emb|CAA04683| - (AJ001330)Contains protein domaintransferase1010omithine transcarbamoylase [Lactobacillus sakei](PF00185) - Aspartate/omithinecarbamoyltransferase87520457620 (1429, 1430)Novel Protein sim. GBank gi|2052147|emb|CAB08137| - (Z94752) ksgAContains protein domaintransferase1008[Mycobacterium tuberculosis](PF00398) - Ribosomal RNAadenine dimethylases87620285868 (2397, 2398)Novel Protein sim. GBank gi|2052147|emb|CAB08137| - (Z94752) ksgAContains protein domaintransferase1031[Mycobacterium tuberculosis](PF00398) - Ribosomal RNAadenine dimethylases8775392182 (7617, 7618)Novel Protein sim. GBank gi|808857 (M29585) - unknown proteinContains protein domaintransferase1055[Saccharomyces cerevisiae](PF00432) - Prenyltransferaseand squalene oxidase repeats87836997687 (5079, 5080)Novel Protein sim. GBank gi|135908|sp|P29277|TKT_RHOSH - Contains protein domaintransferase1001TRANSKETOLASE (TK)(PF00456) - Transketolase87911689874 (1605, 1606)Novel Protein sim. GBank gi|2984067 (AE000755) - transketolaseContains protein domaintransferase1028[Aquifex aeolicus](PF00456) - Transketolase88080217795 (8027, 8028)Novel Protein sim. GBank gi|464894|sp|P33315|TKT2_YEAST - Contains protein domaintransferase1004, 1008, 1020, 1022,TRANSKETOLASE 2 (TK 2)(PF00456) - Transketolase103188139444044 (8085, 8086)Novel Protein sim. GBank gi|2137763|pir||JC4958 - serineContains protein domaintransferase1003hydroxymethyltransferase (EC 2.1.2.—) 1 - mouse(PF00464) - Serinehydroxymethyltransferase88232191727 (5047, 5048)Novel Protein sim. GBank gi|462189|sp|P34895|GLYA_HYPME - SERINEContains protein domaintransferase1021HYDROXYMETHYLTRANSFERASE (SERINE METHYLASE) (SHMT)(PF00464) - Serinehydroxymethyltransferase88330790797 (5799, 5800)Novel Protein sim. GBank gi|1001478|dbj|BAA10104| - (D63999)Contains protein domaintransferase1002hypothetical protein [Synechocystis sp.](PF00534) - Glycosyl transferasesgroup 188480496423 (7013, 7014)Novel Protein sim. GBank gi|4981142|gb|AAD35706.1|AE00173 - Contains protein domaintransferase1004, 1010, 1031(AE001736) lipopolysaccharide biosynthesis protein, putative(PF00534) - Glycosyl transferases[Thermotoga maritima]group 188587453436 (8039, 8040)Novel Protein sim. GBank gi|2078350 (U95923) - transaldolase [SolanumContains protein domaintransferase1023tuberosum](PF00923) - Transaldolase88695292599 (1939, 1940)Novel Protein sim. GBank gi|2995299|emb|CAA18328| - (AL022268)Contains protein domaintransferase1003, 1004, 1008, 1014,putative tRNA delta(2)-isopentenylpyrophosphate transferase(PF01715) - IPP transferase1020, 1021, 1022, 1023,[Streptomyces coelicolor]1031, 1038, 105188786477759 (2921, 2922)Novel Protein sim. GBank gi|1169910|sp|P45177|GLGB_HAEIN - 1,4-transferase1017ALPHA-GLUCAN BRANCHING ENZYME (GLYCOGEN BRANCHINGENZYME)88880430807 (1017, 1018)Novel Protein sim. GBank gi|1171637|sp|P43619|NADC_YEAST - transferase1003, 1004, 1006, 1008,PUTATIVE NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE1010, 1020, 1022, 1027,(CARBOXYLATING) (QUINOLINATE1031, 1035, 1041PHOSPHORIBOSYLTRANSFERASE (DECARBOXYLATING))(QAPRTASE)88950843641 (2313, 2314)Novel Protein sim. GBank gi|117289|sp|P18886|CPT2_RAT - transferase1033MITOCHONDRIAL CARNITINE O-PALMITOYLTRANSFERASE IIPRECURSOR (CPT II)89024128661 (4113, 4114)Novel Protein sim. GBank gi|121741|sp|P08011|GTMI_RAT - transferase1050GLUTATHIONE S-TRANSFERASE, MICROSOMAL89180219043 (3121, 3122)Novel Protein sim. GBank gi|1352650|sp|P48439|OSTG_YEAST - transferase1002, 1003, 1004, 1006,DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN1015, 1020, 1031, 1036GLYCOSYLTRANSFERASE GAMMA SUBUNIT PRECURSOR(OLIGOSACCHARYL TRANSFERASE GAMMA SUBUNIT)(OLIGOSACCHARYL TRANSFERASE 34 KD SUBUNIT)89213525870 (4797, 4798)Novel Protein sim. GBank gi|1929426|emb|CAA69124| - (Y07788)transferase1025ORF35x7 [Vibrio cholerae]89379613528 (3881, 3882)Novel Protein sim. GBank gi|2290999 (AF006000) - unknown [Bordetellatransferase1002pertussis]89480062512 (5871, 5872)Novel Protein sim. GBank gi|232167|sp|P30537|GLGB_BACCL - 1,4-transferase1008ALPHA-GLUCAN BRANCHING ENZYME (GLYCOGEN BRANCHINGENZYME)89580240791 (6127, 6128)Novel Protein sim. GBank gi|2808801|emb|CAA04602.1| - (AJ001205)transferase1014, 1020pep2 [Streptomyces coelicolor]89617942321 (1963, 1964)Novel Protein sim. GBank gi|3128321 (AF010496) - nicotinate-nucleotide-transferase1036dimethylbenzimidazole phosphoribosyltransferase [Rhodobactercapsulatus]89720438324 (3475, 3476)Novel Protein sim. GBank gi|417329|sp|P33038|MURA_ENTCL - UDP-N-transferase1022ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE(ENOYLPYRUVATE TRANSFERASE) (UDP-N-ACETYLGLUCOSAMINE(ENOLPYRUVYL TRANSFERASE) (EPT)89820724532 (595, 596)Novel Protein sim. GBank gi|421646|pir||S34218 - 1,4-alpha-glucantransferase1004branching enzyme (EC 2.4.1.18) - Streptomyces coelicolor89986671251 (3403, 3404)Novel Protein sim. GBank gi|4850383|gb|AAD31053.1|AC00735 - transferase1005(AC007357) Contains similarity to gi|4417304 F15O11.7 putative beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase fromArabidopsis thaliana BAC gb|AC006446.90079421170 (6037, 6038)Novel Protein sim. GBank gi|4981038|gb|AAD35610.1|AE00172 - transferase1004(AE001728) tRNA delta-2-isopentenylpyrophosphate transferase[Thermotoga maritima]90179827474 (3925, 3926)Novel Protein sim. GBank gi|2340075|gb|AAB67299.1| - (U59485) AttEContains protein domaintransport1041[Agrobacterium tumefaciens](PF00005) - ABC transporter90286465157 (7803, 7804)Novel Protein sim. GBank gi|3128283 (AF010496) - iron(iii) dicitrateContains protein domaintransport1002, 1004, 1008, 1020,transport ATP-binding protein [Rhodobacter capsulatus](PF00005) - ABC transporter1026, 102790378406956 (2421, 2422)Novel Protein sim. GBank gi|4001826 (AF063016) - G protein-coupledContains protein domaintransport1004receptor kinase GRK7 [Spermophilus tridecemlineatus](PF00069) - Eukaryotic proteinkinase domain90425323825 (597, 598)Novel Protein sim. GBank gi|114301|sp|P13586|ATC1_YEAST - Contains protein domaintransport1002CALCIUM-TRANSPORTING ATPASE 1 (GOLGI CA2+-ATPASE)(PF00122) - E1-E2 ATPase90580543836 (8851, 8852)Novel Protein sim. GBank gi|114301|sp|P13586|ATC1_YEAST - Contains protein domaintransport1041, 1055CALCIUM-TRANSPORTING ATPASE 1 (GOLGI CA2+-ATPASE)(PF00122) - E1-E2 ATPase90639434986 (6081, 6082)Novel Protein sim. GBank gi|114302|sp|P13587|ATN1_YEAST - SODIUMContains protein domaintransport1004TRANSPORT ATPASE 1(PF00122) - E1-E2 ATPase90713086008 (9021, 9022)Novel Protein sim. GBank gi|1353678 (U42410) - heavy-metalContains protein domaintransport1025transporting P-type ATPase [Proteus mirabilis](PF00122) - E1-E2 ATPase90830673742 (741, 742)Novel Protein sim. GBank gi|1731256|sp|Q10866|YW27_MYCTU - Contains protein domaintransport1006PROBABLE CATION-TRANSPORTING ATPASE CY39.27(PF00122) - E1-E2 ATPase90917121073 (2925, 2926)Novel Protein sim. GBank gi|728935|sp|P38995|ATU2_YEAST - Contains protein domaintransport1036PROBABLE COPPER-TRANSPORTING ATPASE (CU2+-ATPASE)(PF00122) - E1-E2 ATPase91023303892 (8623, 8624)Novel Protein sim. GBank gi|1175298|sp|P44849|Y736_HAEIN - Contains protein domaintransport1035HYPOTHETICAL SODIUM-DEPENDENT TRANSPORTER HI0736(PF00209) - Sodium: neurotransmittersymporter family91190937131 (4161, 4162)Novel Protein sim. GBank gi|3347922 (AF075262) - orphan transporterContains protein domaintransport1018isoform A12 [Mus musculus](PF00209) - Sodium: neurotransmittersymporter family91290935315 (4493, 4494)Novel Protein sim. GBank gi|3347922 (AF075262) - orphan transporterContains protein domaintransport1017, 1018, 1051isoform A12 [Mus musculus](PF00209) - Sodium: neurotransmittersymporter family91378996347 (5607, 5608)Novel Protein sim. GBank gi|131515|sp|P02908|PTGA_SALTY - PTSContains protein domaintransport1001SYSTEM, GLUCOSE-SPECIFIC IIA COMPONENT (EIIA-GLC)(PF00358) - phosphoenolpyruvate(GLUCOSE-PERMEASE IIA COMPONENT) (PHOSPHOTRANSFERASEdependent sugarENZYME II, A COMPONENT) (EIII-GLC)phosphotransferase system, EIIA 191465487496 (8841, 8842)Novel Protein sim. GBank gi|585754|sp|P24217|PTFA_ECOLI - PTSContains protein domaintransport1021SYSTEM, FRUCTOSE-SPECIFIC IIA/FPR COMPONENT (EIIA-FRU)(PF00359) - phosphoenolpyruvate(FRUCTOSE-PERMEASE IIA/FPR COMPONENT)dependent sugar(PHOSPHOTRANSFERASE ENZYME II, A/FPR COMPONENT)phosphotransferase system, EIIA 2(PHOSPHOTRANSFERASE FPR PROTEIN) (PSEUDO-HPR) (EIII-FRU)(FRUCTOSE PTS DIPHO . . .91510194015 (5935, 5936)Novel Protein sim. GBank gi|118906|sp|P23847|DPPA_ECOLI - Contains protein domaintransport1002PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN PRECURSOR(PF00496) - Bacterial extracellular(DIPEPTIDE-BINDING PROTEIN) (DBP)solute-binding proteins, family 591678468887 (5353, 5354)Novel Protein sim. GBank gi|1827807|pdb|1DPE| - Dipeptide-BindingContains protein domaintransport1024Protein(PF00496) - Bacterial extracellularsolute-binding proteins, family 591780055575 (2185, 2186)Novel Protein sim. GBank gi|2960090|emb|CAA17988.1| - (AL022121)Contains protein domaintransport1003dppA [Mycobacterium tuberculosis](PF00496) - Bacterial extracellularsolute-binding proteins, family 591810879734 (1841, 1842)Novel Protein sim. GBank gi|400831|sp|P31135|POTH_ECOLI - Contains protein domaintransport1022PUTRESCINE TRANSPORT SYSTEM PERMEASE PROTEIN POTH(PF00528) - Binding-protein-dependent transport systemsinner membrane component91985520849 (1131, 1132)Novel Protein sim. GBank gi|5458693|emb|CAB50180.1| - (AJ248287)Contains protein domaintransport1046PAB1535 [Pyrococcus abyssi](PF00706) - Anenome neuroloxin92011700068 (677, 678)Novel Protein sim. GBank gi|529013 (U12598) - multidrug resistanceContains protein domaintransport1028protein [Escherichia coli](PF00873) - AcrB/AcrD/AcrFfamily92117087174 (3747, 3748)Novel Protein sim. GBank gi|5031697|ref|NP_005594.1|pFIC1 - familialContains protein domaintransport1021intrahepatic cholestasis 1, (progressive, Byler disease and benign(PF01581) - FMRFamide relatedrecurrent)peptide family92220452390 (2267, 2268)Novel Protein sim. GBank gi|2632049|emb|CAA05608| - (AJ002571)Contains protein domaintransport1022YkoK [Bacillus subtilis](PF01769) - Divalent cationtransporter92310103979 (3641, 3642)Novel Protein sim. GBank gi|1001500|dbj|BAA10125| - (D64000) high-transport1015affinity branched-chain amino acid transport ATP-binding protein[Synechocystis sp.]92411359786 (335, 336)Novel Protein sim. GBank gi|1019379|dbj|BAA05387| - (D26358) CmpBtransport1004, 1010[Synechococcus sp.]92520434142 (5473, 5474)Novel Protein sim. GBank gi|1073007|pir||S54001 - pyoverdinetransport1001, 1008synthetase E - Pseudomonas aeruginosa92610106248 (4789, 4790)Novel Protein sim. GBank gi|1073439|pir||S47706 - hypothetical proteintransport1010f231 - Escherichia coli92717937351 (7315, 7316)Novel Protein sim. GBank gi|114921|sp|P17447|BETT_ECOLI |HIGH-transport1035AFFINITY CHOLINE TRANSPORT PROTEIN92879793961 (8075, 8076)Novel Protein sim. GBank gi|115122|sp|P21627|BRAD_PSEAE - HIGH-transport1002, 1015AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT PROTEINBRAD92979565972 (2845, 2846)Novel Protein sim. GBank gi|116370|sp|P14285|CHRA_PSEAE - transport1015CHROMATE TRANSPORT PROTEIN93016730012 (1585, 1586)Novel Protein sim. GBank gi|1170991|sp|P45321|MODC_HAEIN - transport1036MOLYBDENUM TRANSPORT ATP-BINDING PROTEIN MODC93185800685 (8989, 8990)Novel Protein sim. GBank gi|1171029|sp|P44407|MSBA_HAEIN - transport1023PROBABLE TRANSPORT ATP-BINDING PROTEIN MSBA93229358991 (3919, 3920)Novel Protein sim. GBank gi|1173364|sp|P45380|SAT1_RAT - SULFATEtransport1020ANION TRANSPORTER 1 (CANALICULAR SULFATE TRANSPORTER)(SULFATE/CARBONATE ANTIPORTER)93380440616 (8793, 8794)Novel Protein sim. GBank gi|1173421|sp|P43416|SECY_STRSC - transport1002, 1003, 1004, 1008,PREPROTEIN TRANSLOCASE SECY SUBUNIT1010, 1031, 103593479247343 (1321, 1322)Novel Protein sim. GBank gi|1176165|sp|P42613|YHAU_ECOLI - transport1036HYPOTHETICAL 49.0 KD PROTEIN IN RNPB-SOHA INTERGENICREGION93556616185 (6083, 6084)Novel Protein sim. GBank gi|120593|sp|P11551|FUCP_ECOLI - L - transport1020, 1033FUCOSE PERMEASE93665448630 (8855, 8856)Novel Protein sim. GBank gi|127339|sp|P27299|MSBA_ECOLI - transport1046PROBABLE TRANSPORT ATP-BINDING PROTEIN MSBA93777601022 (9043, 9044)Novel Protein sim. GBank gi|130093|sp|P16677|PHNC_ECOLI - transport1046PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN PHNC93819536664 (5351, 5352)Novel Protein sim. GBank gi|1345859|sp|P49573|CTR1_YEAST - transport1020COPPER TRANSPORT PROTEIN CTR1 (COPPER TRANSPORTER 1)93980063108 (2017, 2018)Novel Protein sim. GBank gi|1346493|sp|P47186|MAXT_YEAST - transport1002, 1006, 1015, 1020,PUTATIVE MALTOSE PERMEASE (MALTOSE TRANSPORT PROTEIN)1022, 104194020481264 (8307, 8308)Novel Protein sim. GBank gi|1352948|sp|P47185|HXTF_YEAST - transport1020, 1055HEXOSE TRANSPORTER HXTI694179245587 (8685, 8686)Novel Protein sim. GBank gi|140681|sp|P03813|YGEA_ECOLI - transport1036HYPOTHETICAL 25.2 KD PROTEIN IN LYSR-ARAE INTERGENICREGION94213523176 (679, 680)Novel Protein sim. GBank gi|1514530|emb|CAA65825| - (X97187) ABC-Ctransport1022transporter [Homo sapiens]94370451588 (8693, 8694)Novel Protein sim. GBank gi|1526981|emb|CAA68204| - (X99945) aminotransport1021, 1046acid permease YeeF like protein [Salmonella typhimurium]94480067879 (6901, 6902)Novel Protein sim. GBank gi|1532204 (U68036) - putative ABCtransport1020transporter intracellular ATPase subunit BldkD [Streptomyces coelicolor]94580053078 (8943, 8944)Novel Protein sim. GBank gi|1651664|dbj|BAA16592| - (D90899) Iron(III)transport1003dicitrate transport system permease protein FecE [Synechocystis sp.]94627803590 (4607, 4608)Novel Protein sim. GBank gi|1654041|emb|CAB03701| - (Z81360)transport1050hypothetical protein Rv1739c [Mycobacterium tuberculosis]94778770592 (6231, 6232)Novel Protein sim. GBank gi|1708002|sp|P48813|GNP1_YEAST - HIGH-transport1007, 1020, 1024AFFINITY GLUTAMINE PERMEASE94834083080 (135, 136)Novel Protein sim. GBank gi|171263 (M88252) - COT1 proteintransport1000[Saccharomyces cerevisiae]94995292787 (67, 68)Novel Protein sim. GBank gi|1723081|sp|Q11046|Y089_MYCTU - transport1022HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEINCY50.0995079189803 (137, 138)Novel Protein sim. GBank gi|1723081|sp|Q11046|Y089_MYCTU - transport1025HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEINCY50.0995111422022 (8971, 8972)Novel Protein sim. GBank gi|1723082|sp|Q11047|Y08A_MYCTU - transport1015HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEINCY50.1095210013989 (4219, 4220)Novel Protein sim. GBank gi|2113938|emb|CAB08923| - (Z95556) fadD35transport1021[Mycobacterium tuberculosis]95320759081 (1381, 1382)Novel Protein sim. GBank gi|2126200|pir||S54438 - hemin permease - transport1020Yersinia enterocolitica95420552734 (1209, 1210)Novel Protein sim. GBank gi|2132318|pir||S69476 - hypothetical proteintransport1055YPR202w - yeast (Saccharomyces cerevisiae)95528473433 (7449, 7450)Novel Protein sim. GBank gi|2143756|pir||S68362 - glucose transporttransport1041protein type 2 - rat (fragment)95610369659 (8173, 8174)Novel Protein sim. GBank gi|2144965|pir||QRECFA - iron(lll) dicitratetransport1015, 1021transport system outer membrane receptor precursor - Escherichia coli95747656103(4649, 4650)Novel Protein sim. GBank gi|2492534|sp|P77327|PROY_ECOLI - transport1026PROLINE-SPECIFIC PERMEASE PROY95879262992 (8035, 8036)Novel Protein sim. GBank gi|2492558|sp|Q47538|TAUB_ECOLI - transport1036TAURINE TRANSPORT ATP-BINDING PROTEIN TAUB95980473481 (7847, 7848)Novel Protein sim. GBank gi|2492595|sp|Q53193|Y4TR_RHISN - transport1010PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEINY4TR96010126820 (939, 940)Novel Protein sim. GBank gi|2492597|sp|Q55774|Y182_SYNY3 - transport1041HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEINSLL018296180219898 (3135, 3136)Novel Protein sim. GBank gi|2492606|sp|Q08234|YOH5_YEAST - transport1002, 1024, 1031, 1035,PROBABLE ATP-DEPENDENT TRANSPORTER YOL075C1036, 104196210082311 (7463, 7464)Novel Protein sim. GBank gi|2495513|sp|P77221|YAHG_ECOLI - transport1041HYPOTHETICAL 50.4 KD PROTEIN IN BETT-PRPR INTERGENICREGION96379833887 (7239, 7240)Novel Protein sim. GBank gi|2501165|sp|Q03263|YM8M_YEAST - transport1006, 1023HYPOTHETICAL 59.6 KD PROTEIN IN DSK2-CAT8 INTERGENICREGION96486474209 (7453, 7454)Novel Protein sim. GBank gi|2501669|sp|P75892|YCDG_ECOLI - transport1006, 1020, 1024, 1026HYPOTHETICAL 48.1 KD PROTEIN IN WRBA-PUTA INTERGENICREGION96580020242 (6329, 6330)Novel Protein sim. GBank gi|2506110|sp|P31219|YBBA_ECOLI - transport1006, 1007, 1008, 1020HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YBBA96679551943 (5489, 5490)Novel Protein sim. GBank gi|2507365|sp|P37902|YBEJ_ECOLI - AMINO-transport1002, 1036ACID ABC TRANSPORTER BINDING PROTEIN IN GLTJ-CUTEINTERGENIC REGION PRECURSOR96755284087 (6637, 6638)Novel Protein sim. GBank gi|2584767|emb|CAA03994.1| - (AJ000327)transport1050adrenoleukodystrophy related protein [Homo sapiens]96813525866 (3015, 3016)Novel Protein sim. GBank gi|2624376|emb|CAA04762| - (AJ001437)transport1025putative P-type cation-translocating membrane ATPase [Proteus mirabilis]96911398575 (8873, 8874)Novel Protein sim. GBank gi|2633814|emb|CAB13316| - (Z99111) similartransport1004to ABC transporter (ATP-binding protein) [Bacillus subtillis]97080060854 (3601, 3602)Novel Protein sim. GBank gi|2649950 (AE001058) - glutamine ABCtransport1003, 1022transporter, ATP-binding protein (glnQ) [Archaeoglobus fulgidus]97195292975 (8113, 8114)Novel Protein sim. GBank gi|2649950 (AE001058) - glutamine ABCtransport1003, 1006, 1008, 1015,transporter, ATP-binding protein (glnQ) [Archaeoglobus fulgidus]1020, 104197255650325 (557, 558)Novel Protein sim. GBank gi|2650420 (AE001090) - branched-chaintransport1000, 1001, 1026amino acid ABC transporter, ATP-binding protein (braG-1)[Archaeoglobus fulgidus]97379560269 (3409, 3410)Novel Protein sim. GBank gi|2661836|emb|CAA75187| - (Y14964)transport1035putative transport protein [Methylophllus methylotrophus]97491013413 (7903, 7904)Novel Protein sim. GBank gi|2665707|gb|AAB88467| - (AF035413) AgaBtransport1008, 1036[Agrobacterium tumefaciens]97555766952 (5543, 5544)Novel Protein sim. GBank gi|2695825|emb|CAA15895| - (AL021006) corAtransport1004, 1051[Mycobacterium tuberculosis]97620293885 (2325, 2326)Novel Protein sim. GBank gi|2695836|emb|CAA15906| - (AL021006)transport1031hypothetical protein Rv1250 [Mycobacterium tuberculosis]97780499399 (3303, 3304)Novel Protein sim. GBank gi|2791517|emb|CAA16054| - (AL021246)transport1004, 1008, 1010, 1020,hypothetical protein Rv2477c [Mycobacterium tuberculosis]1021, 1031, 104197877887171 (8679, 8680)Novel Protein sim. GBank gi|2791517|emb|CAA16054| - (AL021246)transport1019hypothetical protein Rv2477c [Mycobacterium tuberculosis]97979629161 (1297, 1298)Novel Protein sim. GBank gi|290801|gb|AAD152371| - (L17003) member oftransport1036super-family of ABC protein [Frencisella tularensis (var. novicida)]98070514622 (8339, 8340)Novel Protein sim. GBank gi|3128315 (AF010496) - potential secretiontransport1007ATP - binding protein [Rhodobacter capsulatus]98177579839 (8421, 8422)Novel Protein sim. GBank gi|3218373|emb|CAA19625| - (AL023862) ABCtransport1007, 1008transporter ATP binding protein [Streptomyces coelicolor]9825602936 (6455, 6456)Novel Protein sim. GBank gi|3402246|emb|CAA20182| - (AL031184)transport1055oligopeptide ABC transporter ATP-binding protein [Streptomycescoelicolor]98379644200 (6537, 6538)Novel Protein sim. GBank gi|3483045|emb|CAA20556| - (AL031371)transport1035putative transport system permease protein [Streptomyces coelicolor]98488097234 (8909, 8910)Novel Protein sim. GBank gi|3582213 (AE001272) - Potential ABCtransport1016transporter [Lactococcus lactis]98535106817 (6357, 6358)Novel Protein sim. GBank gi|3913092|sp|Q46170|ARCD_CLOPE - transport1004, 1015, 1020, 1024ARGININE/ORNITHINE ANTIPORTER98680062914 (6045, 6046)Novel Protein sim. GBank gi|3915963|sp|P32386|YBT1_YEAST - ATP-transport1008, 1015DEPENDENT BILE ACID PERMEASE98711818289 (3461, 3462)Novel Protein sim. GBank gi|4007737|emb|CAA22421| - (AL034447)transport1004putative sugar transporter [Streptomyces coelicolor]98879859550 (3639, 3640)Novel Protein sim. GBank gi|400961|sp|P04982|RBSD_ECOLI - HIGHtransport1015, 1024AFFINITY RIBOSE TRANSPORT PROTEIN RBSD98979830774 (7999, 8000)Novel Protein sim. GBank gi|409547 (L07492) - sugar transport proteintransport1021[Saccharomyces cerevisiae]99078951434 (7149, 7150)Novel Protein sim. GBank gi|4240130|dbj|BAA74845.1| - (AB020629)transport1041KIAA0822 protein [Homo sapiens]99120288787 (347, 348)Novel Protein sim. GBank gi|4584481|emb|CAB40684.1| - (AL049587)transport1020putative L-asparagine permease [Streptomyces coelicolor]99278378350 (5605, 5606)Novel Protein sim. GBank gi|4584481|emb|CAB40684.1| - (AL049587)transport1006, 1024putative L-asparagine permease [Streptomyces coelicolor]99311397491 (5343, 5344)Novel Protein sim. GBank gi|4928292|gb|AAD33527.1|AF13211 - transport1003(AF132117) FhuA [Staphylococcus aureus]99411686972 (3233, 3234)Novel Protein sim. GBank gi|4981111|gb|AAD35677.1|AE00173 - transport1028(AE001734) amino acid ABC transporter, permease protein [Thermotogamaritima]99565478887 (571, 572)Novel Protein sim. GBank gi|5354185|gb|AAD42394.1|AF15749 - transport1014(AF157493) hypothetical ABC transporter ATP-binding protein[Zymomonas mobilis]99670945398 (4025, 4026)Novel Protein sim. GBank gi|5441754|emb|CAB46778.1| - (AL096811)transport1026putative gluconate permease [Streptomyces coelicolor A3(2)]99794646492 (6023, 6024)Novel Protein sim. GBank gi|5456701|gb|AAD43626.1|AF07141 - transport1028(AF071411) multidrug resistance protein MDR [Emericella nidulans]99879317345 (6835, 6836)Novel Protein sim. GBank gi|5457576|emb|CAB49067.1| - (AJ248283)transport1002, 1020PAB0092 [Pyrococcus abyssi]99980420613 (4809, 4810)Novel Protein sim. GBank gi|5459396|emb|CAB50754.1| - (AL096839)transport1003, 1004, 1008, 1015,putative integral membrane transport protein [Streptomyces coelicolor]1020, 1021, 1023, 1024,1031, 1036100079921598 (681, 682)Novel Protein sim. GBank gi|558389|emb|CAA86236| - (Z38113) len: 888,transport1001CAI: 0.19 incomplete orf similar to SNQ2_YEAST P32568 SNQ2PROTEIN [Saccharomyces cerevisiae]100110332112 (7097, 7098)Novel Protein sim. GBank gi|585410|sp|P22730|LIVG_ECOLI - HIGH-transport1002AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVG (LIV-I PROTEIN G)100279970000 (7393, 7394)Novel Protein sim. GBank gi|585957|sp|P38377|S61A_CANFA - transport1031, 1047PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT100378760805 (5633, 5634)Novel Protein sim. GBank gi|586361|sp|P38358|YB8G_YEAST - transport1014, 1036, 1041HYPOTHETICAL 51.7 KD PROTEIN IN CTP1-SUL2 INTERGENICREGION100480219743 (7581, 7582)Novel Protein sim. GBank gi|586361|sp|P38358|YB8G_YEAST - transport1001, 1003, 1004, 1006,HYPOTHETICAL 51.7 KD PROTEIN IN CTP1-SUL2 INTERGENIC1020, 1028, 1031REGION100554534688 (5357, 5358)Novel Protein sim. GBank gi|586685|sp|P37643|YHJE_ECOLI - transport1038HYPOTHETICAL METABOLITE TRANSPORT PROTEIN IN TREF-KDGKINTERGENIC REGION (O440)100671088508 (169, 170)Novel Protein sim. GBank gi|606163 (U18997) - ORF_1506 [Escherichiatransport1026, 1050coli]100777504621 (8303, 8304)Novel Protein sim. GBank gi|628013|pir||A54892 - Na+-dependenttransport1014nucleoside transport protein cNT1 - rat100827981977 (4865, 4866)Novel Protein sim. GBank gi|729606|sp|P41076|GLTL_ECOLI - transport1050GLUTAMATE/ASPARTATE TRANSPORT ATP-BINDING PROTEIN GLTL100927827777 (5989, 5990)Novel Protein sim. GBank gi|731347|sp|P39109|YCF1_YEAST - METALtransport1022RESISTANCE PROTEIN YCF1 (YEAST CADMIUM FACTOR 1)101080029924 (8097, 8098)Novel Protein sim. GBank gi|731415|sp|P39986|ATC6_YEAST - transport1003, 1004, 1020, 1028,PROBABLE CALCIUM-TRANSPORTING ATPASE 61031, 1041101178791424 (505, 506)Novel Protein sim. GBank gi|731687|sp|P38809|YHP7_YEAST - transport1020HYPOTHETICAL 40.7 KD PROTEIN IN HXT5-NRK1 INTERGENICREGION101217661691 (4543, 4544)Novel Protein sim. GBank gi|731689|sp|P38811|YHP9_YEAST - transport1041HYPOTHETICAL 433.2 KD PROTEIN IN HXT5-NRK1 INTERGENICREGION101380238737 (6063, 6064)Novel Protein sim. GBank gi|731689|sp|P38811|YHP9_YEAST - transport1002, 1004, 1008, 1024,HYPOTHETICAL 433.2 KD PROTEIN IN HXT5-NRK1 INTERGENIC1031REGION101432119870 (6109, 6110)Novel Protein sim. GBank gi|77980|pir||B33586 - C4-dicarboxylatetransport1041transport system regulatory protein DctB - Rhizobium melilotl101511397943 (7161, 7162)Novel Protein sim. GBank gi|83036|pir||A31928 - glucose transporttransport1020protein, high affinity - yeast [Saccharomyces cerevisiae]101679263011 (3423, 3424)Novel Protein sim. GBank gi|95819|pir||S16298 - ferric enterobactintransport1002, 1036transport protein fepC - Escherichia coli101738036706 (1457, 1458)transport1022, 1031101880080600 (4197, 4198)Novel Protein sim. GBank gi|135419|sp|P09734|TBA3_YEAST - TUBULINtubulin1031ALPHA-3 CHAIN101980234579 (3165, 3166)Novel Protein sim. GBank gi|1729859|sp|P53378|TBG_YEAST - tubulin1004, 1015, 1020TUBULIN GAMMA CHAIN102011360183 (7501, 7502)Novel Protein sim. GBank gi|4139493|pdb|1BT0| - Rub1Contains protein domainubiquitin1004(PF00240) - Ubiquitin family102135104003 (4679, 4680)Novel Protein sim. GBank gi|3800760 (AF064248) - ubiquitin specificContains protein domainubiquitin1047protease 46 [Gallus gallus](PF00442) - Ubiquitin carboxyl-terminal hydrolases family 2102228351078 (7135, 7136)Novel Protein sim. GBank gi|136684|sp|P19812|UBR1_YEAST - N-END-ubiquitin1006, 1035RECOGNIZING PROTEIN (UBIQUITIN-PROTEIN LIGASE E3COMPONENT) (N-RECOGNIN)102398964873 (3363, 3364)Novel Protein sim. GBank gi|1717965|sp|P54860|UFD2_YEAST - ubiquitin1001, 1002, 1003, 1004,UBIQUITIN FUSION DEGRADATION PROTEIN 2 (UB FUSION PROTEIN1006, 1008, 1010, 1020,2)1022, 1025, 1031, 1035,1036, 1041102479569225 (1385, 1386)Novel Protein sim. GBank gi|3334400|sp|Q24574|UBPE_DROME - ubiquitin1031UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 64E (UBIQUITINTHIOLESTERASE 64E) (UBIQUITIN-SPECIFIC PROCESSINGPROTEASE 64E) (DEUBIQUITINATING ENZYME 64E)102580217599 (5243, 5244)Novel Protein sim. GBank gi|586433|sp|P38187|UBPD_YEAST - ubiqudin1004, 1020, 1022, 1024,UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 13 (UBIQUITIN1041THIOLESTERASE 13) (UBIQUITIN-SPECIFIC PROCESSINGPROTEASE 13) (DEUBIQUITINATING ENZYME 13)102680231869 (399, 400)Novel Protein sim. GBank gi|731042|sp|P39944|UBP5_YEAST - ubiquitin1003, 1006, 1008, 1015,UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 (UBIQUITIN1020, 1021, 1024, 1031THIOLESTERASE 5) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE5) (DEUBIQUITINATING ENZYME 5)102786473844 (2999, 3000)Novel Protein sim. GBank gi|4768911|gb|AAD29676.1|AF13120 - Contains protein domainwater_channel1002, 1010, 1026, 1051,(AF131201) plasma membrane MIP protein [Zea mays](PF00230) - Major intrinsic protein1055102839587959 (77, 78)Novel Protein sim. GBank gi|1176900|sp|Q09665|YS57_CAEEL - Contains protein domainUNCLASSIFIED1022HYPOTHETICAL CALCIUM-BINDING PROTEIN ZK673.7 IN(PF00036) - EF handCHROMOSOME II102957447926 (8409, 8410)Novel Protein sim. GBank gi|2506252|sp|P12815|ALG2_MOUSE - Contains protein domainUNCLASSIFIED1055PROBABLE CALCIUM-BINDING PROTEIN ALG-2 (PMP41) (ALG-257)(PF00036) - EF hand103080586402 (2773, 2774)Novel Protein sim. GBank gi|119810|sp|P02692|FABL_RAT - FATTYContains protein domainUNCLASSIFIED1006, 1014, 1055ACID-BINDING PROTEIN, LIVER (L-FABP) (Z-PROTEIN) (SQUALENE-(PF00061) - lipocalinAND STEROL-CARRIER PROTEIN) (SCP) (P14)103111101997 (397, 398)Novel Protein sim. GBank gi|1621285 (U64519) - CheAY [RhodospirillumContains protein domainUNCLASSIFIED1004centenum](PF00072) - Response regulatorreceiver domain103220440722 (8721, 8722)Novel Protein sim. GBank gi|5457253|emb|CAB46941.1| - (AL096822)Contains protein domainUNCLASSIFIED1022putative two-component system response transcriptional regulator(PF00072) - Response regulator[Streptomyces coelicolor]receiver domain103380499566 (2105, 2106)Novel Protein sim. GBank gi|464776|sp|P80293|SODM_PROFR - Contains protein domainUNCLASSIFIED1004, 1010, 1026SUPEROXIDE DISMUTASE (MN-FE)(PF00081) - iron/manganesesuperoxide dismutases (SODM)103420189728 (5805, 5806)Novel Protein sim. GBank gi|4156104 (AE001569) - putative OuterContains protein domainUNCLASSIFIED1022membrane protein [Helicobacter pylori J99](PF00098) - Zinc finger, C2H2type103530402847 (2487, 2488)Contains protein domainUNCLASSIFIED1024(PF00096) - Zinc finger, C2H2type103654533415 (7041, 7042)Contains protein domainUNCLASSIFIED1038(PF00103) - Somatotropinhormone family103780020711 (6965, 6966)Novel Protein sim. GBank gi|121383|sp|P19904|GLNA_VIBAL - Contains protein domainUNCLASSIFIED1004, 1020, 1022GLUTAMINE SYNTHETASE (GLUTAMATE-AMMONIA LIGASE)(PF00120) - Glutaminesynthetase103885527155 (373, 374)Novel Protein sim. GBank gi|1707958|sp|Q10378|GLN2_MYCTU - Contains protein domainUNCLASSIFIED1035PROBABLE GLUTAMINE SYNTHETASE 2 (GLUTAMATE-AMMONIA(PF00120) - GlutamineLIGASE 2)synthetase103979817849 (7333, 7334)Novel Protein sim. GBank gi|3183245|sp|P78061|YCJK_ECOLI - Contains protein domainUNCLASSIFIED1015PUTATIVE GLUTAMINE SYNTHETASE (GLUTAMATE-AMMONIA(PF00120) - GlutamineLIGASE)synthetase104082300051 (861, 862)Novel Protein sim. GBank gi|127420|sp|P19888|MTBA_BACAR - Contains protein domainUNCLASSIFIED1001, 1002, 1003, 1004,MODIFICATION METHYLASE BANI (CYTOSINE-SPECIFIC(PF00145) - C-5 cytosine-specific1006, 1007, 1008, 1014,METHYLTRANSFERASE BANI) (M.BANI)DNA methylase1015, 1020, 1021, 1022,1023,1024, 1026, 1031,1035, 1036, 1041, 1055104178383654 (6941, 6942)Novel Protein sim. GBank gi|3876012|emb|CAA90761| - (Z50873)Contains protein domainUNCLASSIFIED1002Similarity to N.crassa ADP/ATP carrier protein (SW: ADT_NEUCR)(PF00153) - Mitochondrial carrier[Caenorhabditis elegans]proteins104236997517 (8895, 8896)Novel Protein sim. GBank gi|1346014|sp|P17899|FLBD_CAUCR - Contains protein domainUNCLASSIFIED1001TRANSCRIPTIONAL REGULATORY PROTEIN FLBD(PF00158) - Sigma-54transcription factors104382062100 (1683, 1684)Novel Protein sim. GBank gi|2501738|sp|Q06639|YD03_YEAST - Contains protein domainUNCLASSIFIED1002, 1003, 1004, 1010,PUTATIVE 101.7 KD TRANSCRIPTIONAL REGULATORY PROTEIN IN(PF00172) - Fungal Zn(2)-Cys(6)1014, 1020, 1022PRO1-CPR5 INTERGENIC REGIONbinuclear cluster domain104477912099 (2459, 2460)Contains protein domainUNCLASSIFIED1014, 1033(PF00185) - Aspartate/omithinecarbamoyltransferase104579600852 (1363, 1364)Novel Protein sim. GBank gi|2506199|sp|P25739|PUR8_ECOLI - Contains protein domainUNCLASSIFIED1020, 1031ADENYLOSUCCINATE LYASE (ADENYLOSUCCINASE) (ASL)(PF00206) - Lyase104615017854 (5505, 5506)Novel Protein sim. GBank gi|18358|sp|P25971|DCOP_BACSU - Contains protein domainUNCLASSIFIED1025OROTIDINE 5′-PHOSPHATE DECARBOXYLASE (OMP(PF00215) - Orotidine 5′-DECARBOXYLASE)phosphate decarboxylases104779244158 (4073, 4074)Novel Protein sim. GBank gi|5596784|emb|CAB51431.1| - (AL096884)Contains protein domainUNCLASSIFIED1035indoleglycerol phosphate synthase [Streptomyces coelicolor A3(2)](PF00218) - Indole-3-glycerolphosphate synthases104820458135 (5183, 5184)Contains protein domainUNCLASSIFIED1008(PF00220) - Neurohypophysialhormones, N-terminal Domain104920285883 (6235, 6236)Novel Protein sim. GBank gi|123761|sp|P24221|HUTH_STRGR - Contains protein domainUNCLASSIFIED1031HISTIDINE AMMONIA-LYASE (HISTIDASE)(PF00221) - Phenylalanine andhistidine ammonia-lyases105091212160 (163, 164)Novel Protein sim. GBank gi|2429094 (U58632) - acetyl xylan esterase;Contains protein domainUNCLASSIFIED1004, 1006, 1007, 1008,AxeA [Thermotoga neapolitana](PF00300) - Phosphoglycerate1019, 1020, 1021, 1022,mutase family1024, 1026, 1031105147656836 (4965, 4966)Contains protein domainUNCLASSIFIED1026(PF00303) - Thymidylatesynthase105286464771 (6233, 6234)Novel Protein sim. GBank gi|118709|sp|P13454|DNAA_PSEPU - Contains protein domainUNCLASSIFIED1026CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA(PF00308) - Bacterial dnaAprotein10538760535 (8163, 8164)Novel Protein sim. GBank gi|118709|sp|P13454|DNAA_PSEPU - Contains protein domainUNCLASSIFIED1008CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA(PF00308) - Bacterial dnaAprotein105480105238 (3949, 3950)Novel Protein sim. GBank gi|3800785 (AF071024) - DNA replicationContains protein domainUNCLASSIFIED1006, 1011, 1024initiator protein [Streptomyces chrysomallus](PF00308) - Bacterial dnaAprotein105580223034 (8949, 8950)Novel Protein sim. GBank gi|114954|sp|P15703|BGL2_YEAST - GLUCANContains protein domainUNCLASSIFIED1003, 1008, 1020, 1021,1,3-BETA-GLUCOSIDASE PRECURSOR (EXO-1,3-BETA-GLUCANASE)(PF00332) - Glycosyl hydrolases1022(GP29)family 17105647656597 (6485, 6486)Novel Protein sim. GBank gi|4103623 (AF026470) - gluconate repressorContains protein domainUNCLASSIFIED1026[Pseudomonas aeruginosa](PF00356) - Bacterial regulatoryproteins, lacl family105766727485 (5461, 5462)Novel Protein sim. GBank gi|1072995|pir||C53373 - hypothetical protein 2Contains protein domainUNCLASSIFIED1046(rpoN 3′ region) - Pseudomonas aeruginosa(PF00359) - phosphoenolpyruvatedependent sugarphosphotransferase system, EIIA 2105838891752 (7405, 7406)Novel Protein sim. GBank gi|1078080|pir||S53395 - hypothetical proteinContains protein domainUNCLASSIFIED1006YLR316c - yeast (Saccharomyces cerevisiae)(PF00383) - Cytidine anddeoxycytidylate deaminase zinc-binding region10598762096 (8401, 8402)Novel Protein sim. GBank gi|1346565|sp|P49309|MOCR_RHIME - Contains protein domainUNCLASSIFIED1020PROBABLE RHIZOPINE CATABOLISM REGULATORY PROTEIN MOCR(PF00392) - Bacterial regulatoryproteins, gntR family106079261968 (447, 448)Novel Protein sim. GBank gi|1709554|sp|P39946|PAC1_YEAST - PAC1Contains protein domainUNCLASSIFIED1006PROTEIN(PF00400) - WD domain, G-betarepeat106179863295 (3421, 3422)Novel Protein sim. GBank gi|3452553|dbj|BAA32473| - (AB001347) brainContains protein domainUNCLASSIFIED1004, 1015, 1031, 1036beta 3 spectrin [Rattus norvegicus](PF00435) - Spectrin repeat106247652053 (1741, 1742)Novel Protein sim. GBank gi|1781101|emb|CAB06235| - (Z83864)Contains protein domainUNCLASSIFIED1026hypothetical protein Rv3855 [Mycobacterium tuberculosis](PF00440) - Bacterial regulatoryproteins, tetR family106378377787 (3107, 3108)Novel Protein sim. GBank gi|2808724|emb|CAA16248| - (AL021428)Contains protein domainUNCLASSIFIED1006hypothetical protein Rv0067c [Mycobacterium tuberculosis](PF00440) - Bacterial regulatoryproteins, tetR family106417906336 (2373, 2374)Novel Protein sim. GBank gi|2815319|emb|CAA16443| - (AL021529)Contains protein domainUNCLASSIFIED1002putative transcriptional regulator [Streptomyces coelicolor](PF00440) - Bacterial regulatoryproteins, tetR family106578475830 (651, 652)Novel Protein sim. GBank gi|3261533|emb|CAA17469| - (AL021943)Contains protein domainUNCLASSIFIED1002fadE8 [Mycobacterium tuberculosis](PF00441) - Acyl-CoAdehydrogenase106680061653 (3377, 3378)Novel Protein sim. GBank gi|1174887|sp|P42873|URE1_STAXY - Contains protein domainUNCLASSIFIED1022UREASE ALPHA SUBUNIT (UREA AMIDOHYDROLASE)(PF00449) - Urease106732435619 (5559, 5560)Novel Protein sim. GBank gi|882488 (U28377) - ORF_f118 [EscherichiaContains protein domainUNCLASSIFIED1026coli](PF00460) - Flagella basal bodyrod proteins106878918582 (8941, 8942)Novel Protein sim. GBank gi|1168291|sp|P42449|ACEA_CORGL - Contains protein domainUNCLASSIFIED1036ISOCITRATE LYASE (ISOCITRASE) (ISOCITRATASE) (ICL)(PF00463) - Isocitrate lyase106913022730 (1129, 1130)Novel Protein sim. GBank gi|2811131 (AF013216) - isocitrate lyaseContains protein domainUNCLASSIFIED1022[Myxococcus xanthus](PF00463) - Isocitrate lyase107016705995 (981, 982)Novel Protein sim. GBank gi|1172911|sp|P45833|RF1_MYCLE - Contains protein domainUNCLASSIFIED1006PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1)(PF00472) - Prokaryotic-typeclass I peptide chain releasefactors107178463975 (8009, 8010)Novel Protein sim. GBank gi|2500143|sp|O05782|RF2_MYCTU - Contains protein domainUNCLASSIFIED1015PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2)(PF00472) - Prokaryotic-typeclass I peptide chain releasefactors107294989520 (863, 864)Novel Protein sim. GBank gi|128710|sp|P03897|NU3M_HUMAN - NADH-Contains protein domainUNCLASSIFIED1031UBIQUINONE OXIDOREDUCTASE CHAIN 3(PF00507) - NADH-ubiquinone/plastoquinoneoxidoreductase, chain 3107327832079 (2441, 2442)Novel Protein sim. GBank gi|584897|sp|P38042|CC27_YEAST - CELLContains protein domainUNCLASSIFIED1003, 1008, 1020DIVISION CONTROL PROTEIN 27(PF00515) - TPR Domain107429254635 (7039, 7040)Novel Protein sim. GBank gi|3258282|dbj|BAA30965.1| - (AP000007)Contains protein domainUNCLASSIFIED1006381 aa long hypothetical protein [Pyrococcus horikoshii](PF00534) - Glycosyl transferasesgroup 1107520297958 (3375, 3376)Novel Protein sim. GBank gi|1168375|sp|P43467|AGA1_PEDPE - ALPHAContains protein domainUNCLASSIFIED1031GALACTOSIDASE 1 (MELIBIASE)(PF00547) - Urease, gammasubunit107680248091 (6713, 6714)Novel Protein sim. GBank gi|2829506|sp|P71559|SUCC_MYCTU - Contains protein domainUNCLASSIFIED1001, 1002, 1004, 1010,SUCCINYL-COA SYNTHETASE BETA CHAIN (SCS-BETA)(PF00549) - CoA-ligases1028, 1031107780503640 (5001, 5002)Novel Protein sim. GBank gi|1518185|emb|CAA65743| - (X97015)Contains protein domainUNCLASSIFIED1010transposase [Arthrobacter nicotinovorans](PF00552) - Integrase107880219757 (671, 672)Novel Protein sim. GBank gi|2133114|pir||S69673 - SAC7 protein - yeastContains protein domainUNCLASSIFIED1001, 1006, 1015, 1020,(Saccharomyces cerevisiae)(PF00556) - Antenna complex1031, 1036alpha/beta subunit107954531468 (3451, 3452)Novel Protein sim. GBank gi|2981221 (AF053091) - eyelid [DrosophilaContains protein domainUNCLASSIFIED1038melanogaster](PF00560) - Leucine Rich Repeat108094666655 (8445, 8446)Novel Protein sim. GBank gi|4068|emb|CAA44073| - (X62147) nud1Contains protein domainUNCLASSIFIED1004[Saccharomyces cerevisiae](PF00580) - Leucine Rich Repeat108129902323 (4019, 4020)Novel Protein sim. GBank gi|313748|emb|CAA80797| - (Z23261)Contains protein domainUNCLASSIFIED1006YBLO501 [Saccharomyces cerevisiae](PF00627) - UBA domain108237800972 (3033, 3034)Novel Protein sim. GBank gi|2654448 (U78300) - elongation factor GContains protein domainUNCLASSIFIED1010[Thiobacillus cuprinus](PF00679) - Elongation factor G Cterminus10838910323 (7533, 7534)Novel Protein sim. GBank gi|100189|dbj|BAA10700| - (D64005) cationContains protein domainUNCLASSIFIED1036efflux system protein [Synechocystis sp.](PF00873) - AcrB/AcrD/AcrFfamily108479599728 (6241, 6242)Novel Protein sim. GBank gi|2506614|sp|P38054|YBDE_ECOLI - Contains protein domainUNCLASSIFIED1002HYPOTHETICAL 114.7 KD PROTEIN IN NFRB-PHEP INTERGENIC(PF00873) - AcrB/AcrD/AcrFREGIONfamily108565448422 (6933, 6934)Novel Protein sim. GBank gi|3025164|sp|P76398|YEGN_ECOLI - Contains protein domainUNCLASSIFIED1007HYPOTHETICAL 112.1 KD PROTEIN IN ALKA-BAES INTERGENIC(PF00873) - AcrB/AcrD/AcrFREGIONfamily108629693301 (8999, 9000)Novel Protein sim. GBank gi|2654484 (U89914) - hypothetical 16.1 kDaContains protein domainUNCLASSIFIED1022transcriptional regulator [Bacillus firmus](PF01047) - MarR family108727843061 (5971, 5972)Novel Protein sim. GBank gi|606223 (U18997) - we have one ORF,Contains protein domainUNCLASSIFIED1020ECFMT has fmu and fmv [Escherichia coli](PF01189) - NOL1/NOP2/sunfamily108830656288 (7647, 7648)Novel Protein sim. GBank gi|1926279|emb|CAA71938| - (Y11043)Contains protein domainUNCLASSIFIED1041hypothetical barstar-like protein [Bacillus subtills](PF01337) - Barstar (bamaseinhibitor)108917852010 (1477, 1478)Novel Protein sim. GBank gi|3165570 (AF067946) - similar to DrosophilaContains protein domainUNCLASSIFIED1002, 1031, 1036, 1055ring canal protein (kelch) (SW: Q04852) [Caenorhabditis elegans](PF01344) - Kelch motif109080027802 (4143, 4144)Novel Protein sim. GBank gi|2384563 (U70470) - beta-hydroxydecanoyl-Contains protein domainUNCLASSIFIED1004, 1008, 1022, 1031ACP dehydrase [Pseudomonas aeruginosa](PF01377) - Thioester dehydrase109110237183 (5701, 5702)Contains protein domainUNCLASSIFIED1036(PF01381) - Helix-turn-helix109277518931 (8643, 8644)Novel Protein sim. GBank gi|2119159|pir||I50694 - alpha-1 collagen typeContains protein domainUNCLASSIFIED1009, 1027, 1035III - chicken (fragment)(PF01391) - Collagen triple helixrepeat (20 copies)109313526943 (3733, 3734)Novel Protein sim. GBank gi|116515|sp|P22137|CLH_YEAST - Contains protein domainUNCLASSIFIED1022CLATHRIN HEAVY CHAIN(PF01394) - Clathrin propellerrepeat109478736414 (695, 696)Novel Protein sim. GBank gi|2137494|pir||S66498 - M-sema F proteinContains protein domainUNCLASSIFIED1006precusor - mouse(PF01403) - Sema domain109520562364 (4691, 4692)Novel Protein sim. GBank gi|123938|sp|P24191|HYPC_ECOLI - Contains protein domainUNCLASSIFIED1020HYDROGENASE ISOENZYMES FORMATION PROTEIN HYPC(PF01455) - HupF/HypC family109656321668 (8963, 8964)Novel Protein sim. GBank gi|2131341|pir||S67663 - hypothetical proteinContains protein domainUNCLASSIFIED1007, 1020, 1024YDL120w - yeast (Saccharomyces cerevisiae)(PF01491) - Frataxin-like domain109717696277 (7913, 7914)Novel Protein sim. GBank gi|1750115 (U66480) - YnaD [Bacillus subtilis]Contains protein domainUNCLASSIFIED1015(PF01581) - FMRFamide relatedpeptide family109879322438 (6159, 6160)Novel Protein sim. GBank gi|2578384|emb|CAA15469| - (AL008609)Contains protein domainUNCLASSIFIED1008, 1026, 1050glycine cleavage system h protein [Mycobacterium leprae](PF01597) - Glycine cleavage H-protein109920467324 (4961, 4962)Contains protein domainUNCLASSIFIED1008(PF01816) - Leucine rich repeatvariant110011031760 (2651, 2652)Novel Protein sim. GBank gi|40507|emb|CAA48850| - (X69104) ORF2Contains protein domainUNCLASSIFIED1051[Corynebacterium glutamicum]PF01836) - Transposase110156007904 (8151, 8152)Novel Protein sim. GBank gi|3025019|sp|O07734|YC20_MYCTU - Contains protein domainUNCLASSIFIED1015HYPOTHETICAL 11.0 KD PROTEIN CY180.20C(PF01910) - Protein of unknownfunction110228800967 (751, 752)Novel Protein sim. GBank gi|2916923|emb|CAA17670.1| - (AL022004)Contains protein domainUNCLASSIFIED1020moaC2 [Mycobacterium tuberculosis](PF01967) - MoaC family110336996478 (4807, 4808)Novel Protein sim. GBank gi|1001461|dbj|BAA10087| - (D63999)UNCLASSIFIED1001hypothetical protein [Synechocystis sp.]110478140654 (6529, 6530)Novel Protein sim. GBank gi|100788|pir||S18733 - glutenin high molecularUNCLASSIFIED1014, 1019weight chain 1By9 precursor - wheat110511417249 (455, 456)Novel Protein sim. GBank gi|1044963|bbs|169646 - protamineUNCLASSIFIED1015[Monodonta turbinata, gonads, Peptide, 106 aa]110620621948 (8297, 8298)Novel Protein sim. GBank gi|1050749|emb|CAA61941| - (X89816) GSTRUNCLASSIFIED1003protein [Rhizobium leguminosarum]110779835962 (8449, 8450)Novel Protein sim. GBank gi|1050749|emb|CAA61941| - (X89816) GSTRUNCLASSIFIED1001, 1006protein [Rhizobium leguminosarum]110819636755 (1255, 1256)Novel Protein sim. GBank gi|1061334 (U34258) - cappuccino [DrosophilaUNCLASSIFIED1022melanogaster]110980245076 (3301, 3302)Novel Protein sim. GBank gi|106322|pir||B34087 - hypothetical proteinUNCLASSIFIED1002, 1003, 1006, 1015,(L1H 3′ region) - human1022111079412708 (9039, 9040)Novel Protein sim. GBank gi|106322|pir||B34087 - hypothetical proteinUNCLASSIFIED1022(L1H 3′ region) - human11116770549 (5275, 5276)Novel Protein sim. GBank gi|1072944|pir||A48008 - electron transferUNCLASSIFIED1020flavoprotein beta chain - Paracoccus denitrificans111237036768 (645, 646)Novel Protein sim. GBank gi|1074262|pir||H64142 - hypothetical proteinUNCLASSIFIED1010HI0107 - Haemophilus lnfluenzae (strain Rd KW20)111379867038 (8391, 8392)Novel Protein sim. GBank gi|1076211|pir||S50755 - hypothetical proteinUNCLASSIFIED1021, 1022, 1035, 1041VSP-3 - Chlamydomonas reinhardtii111498236309 (6833, 6834)Novel Protein sim. GBank gi|1076627|pir||S54172 - inorganicUNCLASSIFIED1008, 1014pyrophosphatase (EC 3.6.1.1) - common tobacco111578782677 (8245, 8246)Novel Protein sim. GBank gi|1077247|pir||S52507 - probable membraneUNCLASSIFIED1020protein YDL012c - yeast (Saccharomyces cerevisiae)111634885537 (3921, 3922)Novel Protein sim. GBank gi|1077261|pir||S52527 - hypothetical proteinUNCLASSIFIED1000YPL004c - yeast (Saccharomyces cerevisiae)111729271303 (987, 988)Novel Protein sim. GBank gi|1077262|pir||S52528 - hypothetical proteinUNCLASSIFIED1002YPL003w - yeast (Saccharomyces cerevisiae)111878518134 (2353, 2354)Novel Protein sim. GBank gi|1077307|pir||S51892 - probable membraneUNCLASSIFIED1007protein YOL105c - yeast (Saccharomyces cerevisiae)111980229807 (1721, 1722)Novel Protein sim. GBank gi|1077333|pir||S51473 - probable membraneUNCLASSIFIED1004, 1006, 1022, 1036protein YLR386w - yeast (Saccharomyces cerevisiae)112057535632 (8241, 8242)Novel Protein sim. GBank gi|1077394|pir||S51408 - hypothetical proteinUNCLASSIFIED1055YLR272c - yeast (Saccharomyces cerevisiae)112139565537 (4731, 4732)Novel Protein sim. GBank gi|1077522|pir||S51244 - hypothetical proteinUNCLASSIFIED1008YDR095c - yeast (Saccharomyces cerevisiae)112211398083 (6161, 6162)Novel Protein sim. GBank gi|1077561|pir||S54050 - hypothetical proteinUNCLASSIFIED1003, 1031YDR066c - yeast (Saccharomyces cerevisiae)112310853113 (4429, 4430)Novel Protein sim. GBank gi|1078406|pir||S47536 - SWH1 proteinUNCLASSIFIED1001(version 2) - yeast (Saccharomyces cerevisiae)112488094158 (7017, 7018)Novel Protein sim. GBank gi|1079170|pir||S50125 - larval glue protein LgpUNCLASSIFIED10033 precursor - fruit fly (Drosophila virilis)112537814616 (2801, 2802)Novel Protein sim. GBank gi|1100076 (L49336) - PTS-dependent enzymeUNCLASSIFIED1055II [Clostridium longisporum]112679614995 (8605, 8606)Novel Protein sim. GBank gi|1118097 (U41557) - proline and glycine-richUNCLASSIFIED1001, 1002[Caenorhabditis elegans]112736824986 (7553, 7554)Novel Protein sim. GBank gi|112205|pir||B39066 - proline-rich protein 15 - UNCLASSIFIED1051rat112837802237 (2591, 2592)Novel Protein sim. GBank gi|112261|pir||S16783 - hypothetical protein 2 - UNCLASSIFIED1055rat transposon L1112933182574 (3505, 3506)Novel Protein sim. GBank gi|112262|pir||S21976 - hypothetical protein 1 - UNCLASSIFIED1024rat transposon L1113029915706 (3309, 3310)Novel Protein sim. GBank gi|113666|sp|P23959|ALUA_HUMAN - !!!! ALUUNCLASSIFIED1022CLASS A WARNING ENTRY !!!!113165704865 (3625, 3626)Novel Protein sim. GBank gi|113666|sp|P23959|ALUA_HUMAN - !!!! ALUUNCLASSIFIED1002CLASS A WARNING ENTRY !!!!113265327228 (4471, 4472)Novel Protein sim. GBank gi|113668|sp|P23961 |ALUC_HUMAN - !!!! ALUUNCLASSIFIED1035CLASS C WARNING ENTRY !!!!113311126833 (7295, 7296)Novel Protein sim. GBank gi|113668|sp|P23961|ALUC_HUMAN - !!!! ALUUNCLASSIFIED1020CLASS C WARNING ENTRY !!!!113485535625 (8715, 8716)Novel Protein sim. GBank gi|113668|sp|P23961|ALUC_HUMAN - !!!! ALUUNCLASSIFIED1035CLASS C WARNING ENTRY !!!!113513088036 (2409, 2410)Novel Protein sim. GBank gi|1139566|dbj|BAA08630| - (D49826)UNCLASSIFIED1028unnamed protein product [Serratia marcescens]113657522854 (759, 760)Novel Protein sim. GBank gi|1146422 (U20254) - Ssu1p [SaccharomycesUNCLASSIFIED1003, 1020, 1023, 1031cerevisiae]113757447671 (3191, 3192)Novel Protein sim. GBank gi|114714|sp|P04694|ATTY_RAT - TYROSINEUNCLASSIFIED1055AMINOTRANSFERASE (L-TYROSINE: 2-OXOGLUTARATEAMINOTRANSFERASE) (TAT)113820297108 (3713, 3714)Novel Protein sim. GBank gi|114878|sp|P11435|BCPA_STRHY - UNCLASSIFIED1031CARBOXYVINYL-CARBOXYPHOSPHONATE PHOSPHORYLMUTASE(CARBOXYPHOSPHONOENOLPYRUVATE PHOSPHONOMUTASE)(CPEP PHOSPHONOMUTASE)113979633909 (1707, 1708)Novel Protein sim. GBank gi|115405|sp|P20630|CC12_CAEEL - UNCLASSIFIED1035CUTICLE COLLAGEN 12 PRECURSOR114027975264 (3003, 3004)Novel Protein sim. GBank gi|115939|sp|P06961|CCA_ECOLI - TRNAUNCLASSIFIED1004NUCLEOTIDYLTRANSFERASE (TRNA ADENYLYLTRANSFERASE)(TRNA CCA-PYROPHOSPHORYLASE) (CCA-ADDING ENZYME)114166489053 (1271, 1272)Novel Protein sim. GBank gi|1160355 (U33058) - UNC-89 [CaenorhabditisUNCLASSIFIED1001, 1003, 1022, 1026elegans]114237026059 (4289, 4290)Novel Protein sim. GBank gi|116371|sp|P17552|CHRB_ALCEU - CHRBUNCLASSIFIED1035PROTEIN114357292564 (1379, 1380)Novel Protein sim. GBank gi|1164988|emb|CAA64063| - (X94335)UNCLASSIFIED1006, 1008, 1020YOR3513c [Saccharomyces cerevisiae]114411808714 (955, 956)Novel Protein sim. GBank gi|116837|sp|P21636|COBF_PSEDE - COBFUNCLASSIFIED1020PROTEIN114586473327 (3299, 3300)Novel Protein sim. GBank gi|1169153|sp|P46356|CYAY_YERPE - CYAYUNCLASSIFIED1026PROTEIN114679607194 (1509, 1510)Novel Protein sim. GBank gi|1169255|sp|P42503|DCUP_RHOCA - UNCLASSIFIED1004, 1036UROPORPHYRINOGEN DECARBOXYLASE (UPD)114765682712 (1863, 1864)Novel Protein sim. GBank gi|1171060|sp|P43505|MTRC_NEIGO - UNCLASSIFIED1008, 1021MEMBRANE FUSION PROTEIN MTRC PRECURSOR114886475460 (4097, 4098)Novel Protein sim. GBank gi|1171071|sp|P45066|MURC_HAEIN - UDP-N-UNCLASSIFIED1045ACETYLMURAMATE-ALANINE LIGASE (UDP-N-ACETYLMURANOYL-LALANINE SYNTHETASE)114920610309 (1999, 2000)Novel Protein sim. GBank gi|1172069|sp|P45494|PEPV_LACDL - XAA-UNCLASSIFIED1004HIS DIPEPTIDASE (X-HIS DIPEPTIDASE) (AMINOACYL-HISTIDINEDIPEPTIDASE) (CARNOSINASE)115037018030 (3265, 3266)Novel Protein sim. GBank gi|1172069|sp|P45494|PEPV_LACDL - XAA-UNCLASSIFIED1023HIS DIPEPTIDASE (X-HIS DIPEPTIDASE) (AMINOACYL-HISTIDINEDIPEPTIDASE) (CARNOSINASE)115120608541 (3129, 3130)Novel Protein sim. GBank gi|1172509|sp|P42257|PILJ_PSEAE - PILJUNCLASSIFIED1003PROTEIN115279173584 (3163, 3164)Novel Protein sim. GBank gi|1172783|sp|P41008|PYRB_BACCL - UNCLASSIFIED1028ASPARTATE CARBAMOYLTRANSFERASE (ASPARTATETRANSCARBAMYLASE) (ATCASE)115325256802 (8809, 8810)Novel Protein sim. GBank gi|1173364|sp|P45380|SAT1_RAT - SULFATEUNCLASSIFIED1006ANION TRANSPORTER 1 (CANALICULAR SULFATE TRANSPORTER)(SULFATE/CARBONATE ANTIPORTER)115480411891 (8975, 8976)Novel Protein sim. GBank gi|1174661|sp|P44594|TGT_HAEIN - UNCLASSIFIED1026, 1041QUEUINE TRNA-RIBOSYLTRANSFERASE (TRNA-GUANINETRANSGLYCOSYLASE) (GUANINE INSERTION ENZYME)115511102917 (8767, 8768)Novel Protein sim. GBank gi|1175364|sp|Q09686|YA14_SCHPO - UNCLASSIFIED1004, 1022HYPOTHETICAL 28.0 KD PROTEIN C13C5.04 IN CHROMOSOME I115611088365 (5787, 5788)Novel Protein sim. GBank gi|1175473|sp|P44555|YAAJ_HAEIN - UNCLASSIFIED1003HYPOTHETICAL PROTEIN HI0183115711122739 (8465, 8466)Novel Protein sim. GBank gi|1175939|sp|P43567|YFD0_YEAST - UNCLASSIFIED1031HYPOTHETICAL 41.9 KD PROTEIN IN HAC1-CAK1 INTERGENICREGION115879873114 (7261, 7262)Novel Protein sim. GBank gi|1175941|sp|P43564|YFD4_YEAST - UNCLASSIFIED1004HYPOTHETICAL 119.5 KD PROTEIN IN MOB2-RIM15 INTERGENICREGION115911413362 (8687, 8688)Novel Protein sim. GBank gi|1176206|sp|P46481 |YHCP_ECOLI - UNCLASSIFIED1051HYPOTHETICAL 73.6 KD PROTEIN IN ARGR-CAFA INTERGENICREGION (F655)116080050336 (8197, 8198)Novel Protein sim. GBank gi|1176207|sp|P46482|YHCQ_ECOLI - UNCLASSIFIED1004HYPOTHETICAL 34.8 KD PROTEIN IN ARGR-CAFA INTERGENICREGION116178785842 (4443, 4444)Novel Protein sim. GBank gi|1176918|sp|P24089|YSY2_YEAST - UNCLASSIFIED1007, 1041HYPOTHETICAL 137.7 KD PROTEIN IN SUBTELOMERIC Y' REPEATREGION OF CHR XV (ORF 2)116232571568 (2903, 2904)Novel Protein sim. GBank gi|1176968|sp|P42107|YXAH_BACSU - UNCLASSIFIED1031HYPOTHETICAL 46.2 KD PROTEIN IN GNTR-HTPG INTERGENICREGION116378435203 (3411, 3412)Novel Protein sim. GBank gi|119111|sp|P12978|EBN2_EBV - EBNA-2UNCLASSIFIED1020NUCLEAR PROTEIN116478996721 (4617, 4618)Novel Protein sim. GBank gi|120450|sp|P27251|DEF_ECOLI - UNCLASSIFIED1007, 1041POLYPEPTIDE DEFORMYLASE (PDF) (FORMYLMETHIONINEDEFORMYLASE)116510159084 (8761, 8762)Novel Protein sim. GBank gi|120475|sp|P05523|FPG_ECOLI - UNCLASSIFIED1003FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FAPY-DNAGLYCOSYLASE)116617869389 (2211, 2212)Novel Protein sim. GBank gi|120943|sp|P13816|GARP_PLAFF - UNCLASSIFIED1006, 1022GLUTAMIC ACID-RICH PROTEIN PRECURSOR116719877214 (7289, 7290)Novel Protein sim. GBank gi|121191|sp|P17113|GIDB_ECOLI - UNCLASSIFIED1031GLUCOSE INHIBITED DIVISION PROTEIN B116821434344 (4413, 4414)Novel Protein sim. GBank gi|1213021|emb|CAA59198| - (X84710)UNCLASSIFIED1031ORF492, surface antigen gene [Methanosarcina mazei]116925154002 (4817, 4818)Novel Protein sim. GBank gi|121661|sp|P06980|GSH1_ECOLI - UNCLASSIFIED1002, 1021GLUTAMATE-CYSTEINE LIGASE (GAMMA-GLUTAMYLCYSTEINESYNTHETASE) (GAMMA-ECS) (GCS)117066051387 (1571, 1572)Novel Protein sim. GBank gi|1228093|emb|CAA87011| - (Z46913)UNCLASSIFIED1008polyketide synthase [Streptomyces ambofaciens]117138895546 (5193, 5194)Novel Protein sim. GBank gi|122829|sp|P13581|HEM1_SALTY - UNCLASSIFIED1006GLUTAMYL-TRNA REDUCTASE (GLUTR)117265503633 (1909, 1910)Novel Protein sim. GBank gi|123166|sp|P28735|HIS8_MYCSM - UNCLASSIFIED1046HISTIDINOL-PHOSPHATE AMINOTRANSFERASE (IMIDAZOLEACETOL-PHOSPHATE TRANSAMINASE)117378784365 (2173, 2174)Novel Protein sim. GBank gi|124890|sp|P19158|IRA2_YEAST - UNCLASSIFIED1020INHIBITORY REGULATOR PROTEIN IRA2117420385137 (8785, 8786)Novel Protein sim. GBank gi|125329|sp|P04951|KDSB_ECOLI - 3-UNCLASSIFIED1003DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE (CMP-KDO SYNTHETASE) (CMP-2-KETO-3-DEOXYOCTULOSONIC ACIDSYNTHETASE) (CKS)117578901612 (1513, 1514)Novel Protein sim. GBank gi|125682|sp|P26372|KRUC_SHEEP - UNCLASSIFIED1002KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN (UHS KERATIN)117627829679 (8249, 8250)Novel Protein sim. GBank gi|125733|sp|P10716|KUCR_RAT - KUPFFERUNCLASSIFIED1003, 1031CELL RECEPTOR117736514909 (6095, 6096)Novel Protein sim. GBank gi|125970|sp|P14206|RSP4_MOUSE - 40SUNCLASSIFIED1026RIBOSOMAL PROTEIN SA (P40) (34/67 KD LAMININ RECEPTOR)117890936861 (8621, 8622)Novel Protein sim. GBank gi|126722|sp|P27046|MAN2_MOUSE - ALPHA-UNCLASSIFIED1018MANNOSIDASE II (MANNOSYL-OLIGOSACCHARIDE 1,3-1,6-ALPHA-MANNOSIDASE) (MAN II) (GOLGI ALPHA-MANNOSIDASE II)117955284151 (4053, 4054)Novel Protein sim. GBank gi|127320|sp|P24202|MRR_ECOLI - MRRUNCLASSIFIED1050RESTRICTION SYSTEM PROTEIN118085526278 (6895, 6896)Novel Protein sim. GBank gi|127549|sp|P11652|MUTA_PROFR - UNCLASSIFIED1004, 1006, 1008, 1010,METHYLMALONYL-COA MUTASE BETA-SUBUNIT (MCB-BETA)1020, 1021, 1026, 1031,1036, 1041, 1046118178524503 (889, 890)Novel Protein sim. GBank gi|128405|sp|P16313|NO21_SOYBN - UNCLASSIFIED1002, 1051NODULIN 21 (N-21)118230577018 (6069, 6070)Novel Protein sim. GBank gi|130084|sp|P06200|PHLC_PSEAE - UNCLASSIFIED1007HEMOLYTIC PHOSPHOLIPASE C PRECURSOR (HEAT LABILE-HEMOLYSIN) (PHOSPHATIDYLCHOLINECHOLINEPHOSPHOHYDROLASE)118320465412 (6557, 6558)Novel Protein sim. GBank gi|130367|sp|P22253|PNCB_SALTY - UNCLASSIFIED1008NICOTINATE PHOSPHORIBOSYLTRANSFERASE (NAPRTASE)118427982145 (715, 716)Novel Protein sim. GBank gi|1304154|dbj|BAA11461| - (D78644) DNAUNCLASSIFIED1004polymerase [Mus musculus]118510158862 (4243, 4244)Novel Protein sim. GBank gi|130998|sp|P02812|PRP2_HUMAN - UNCLASSIFIED1002, 1055SALIVARY PROLINE-RICH PROTEIN PRECURSOR (CLONE CP7)[CONTAINS: BASIC PEPTIDE P-F]118623281336 (331, 332)Novel Protein sim. GBank gi|131225|sp|P23993|PSAL_HORVU - UNCLASSIFIED1002PHOTOSYSTEM I REACTION CENTRE SUBUNIT XI PRECURSOR(SUBUNIT V) (PSI-L)118723292290 (869, 870)Novel Protein sim. GBank gi|1313926|emb|CAA66267| - (X97677) nonUNCLASSIFIED1015intermediate filament IFA binding protein [Brassica oleracea]118880497275 (5069, 5070)Novel Protein sim. GBank gi|1314835 (U56084) - exogenous ferricUNCLASSIFIED1010siderophore receptor [Bordetella bronchiseptica]11899354676 (2687, 2688)Novel Protein sim. GBank gi|132360|sp|P05684|REPC_AGRRA - UNCLASSIFIED1006POSSIBLE REPLICATION PROTEIN C119079233832 (775, 776)Novel Protein sim. GBank gi|132523|sp|P19263|RGR1_YEAST - UNCLASSIFIED1001, 1006, 1024, 1041GLUCOSE REPRESSION REGULATORY PROTEIN RGR1119179261586 (1819, 1820)Novel Protein sim. GBank gi|134515|sp|P17883|SKI3_YEAST - UNCLASSIFIED1021, 1046SUPERKILLER 3 PROTEIN119282476553 (7859, 7860)Novel Protein sim. GBank gi|1346647|sp|P49687|N145_YEAST - UNCLASSIFIED1001, 1006, 1008, 1010,NUCLEOPORIN NUP145 (NUCLEAR PORE PROTEIN NUP145)1015, 1020, 1022, 1031,1051119395293062 (615, 616)Novel Protein sim. GBank gi|1346722|sp|P49022|PIP_LACLA - PHAGEUNCLASSIFIED1020INFECTION PROTEIN119410340949 (1031, 1032)Novel Protein sim. GBank gi|1346910|sp|P28650|PUA1_MOUSE - UNCLASSIFIED1035ADENYLOSUCCINATE SYNTHETASE, MUSCLE ISOZYME (IMP-ASPARTATE LIGASE)119527981812 (1067, 1068)Novel Protein sim. GBank gi|134780|sp|P14328|SP96_DICDI - SPOREUNCLASSIFIED1004COAT PROTEIN SP96119679854352 (6415, 6416)Novel Protein sim. GBank gi|134837|sp|P17580|SPOT_ECOLI - UNCLASSIFIED1015, 1021, 1036GUANOSINE-3′,5′-BIS(DIPHOSPHATE) 3′-PYROPHOSPHOHYDROLASE ((PPGPP)ASE) (PENTA-PHOSPHATEGUANOSINE-3′-PYROPHOSPHOHYDROLASE)119730422207 (3329, 3330)Novel Protein sim. GBank gi|135083|sp|P24506|SY62_DISOM - UNCLASSIFIED1041SYNAPTOTAGMIN B (SYNAPTIC VESICLE PROTEIN O-P65-B)119880083733 (2665, 2666)Novel Protein sim. GBank gi|1351184|sp|P48527|SYYM_YEAST - UNCLASSIFIED1020, 1031TYROSYL-TRNA SYNTHETASE, MITOCHONDRIAL PRECURSOR(TYROSINE-TRNA LIGASE) (TYRRS)119920736833 (8379, 8380)Novel Protein sim. GBank gi|135139|sp|P15180|SYKC_YEAST - LYSYL-UNCLASSIFIED1020TRNA SYNTHETASE, CYTOPLASMIC (LYSINE - TRNA LIGASE)(LYSRS)120020628105 (2559, 2560)Novel Protein sim. GBank gi|1351821|sp|P48236|YG3L_YEAST - UNCLASSIFIED1008HYPOTHETICAL 51.6 KD PROTEIN IN RPL30B-RSR1 INTERGENICREGION120180219752 (9051, 9052)Novel Protein sim. GBank gi|1352873|sp|P47101|YJ00_YEAST - UNCLASSIFIED1003, 1004, 1022, 1027,HYPOTHETICAL 84.3 KD PROTEIN IN BNA1-CPR7 INTERGENIC1041REGION120280245061 (1369, 1370)Novel Protein sim. GBank gi|1352874|sp|P47102|YJ01_YEAST - UNCLASSIFIED1004, 1006, 1008, 1020HYPOTHETICAL 159.4 KD PROTEIN IN MER2-CPR7 INTERGENICREGION120324141321 (6563, 6564)Novel Protein sim. GBank gi|1352890|sp|P47123|YJ44_YEAST - UNCLASSIFIED1007HYPOTHETICAL 24.3 KD PROTEIN IN PEM2-HOC1 INTERGENICREGION120478790208 (1267, 1268)Novel Protein sim. GBank gi|1352977|sp|P47050|YJE7_YEAST - UNCLASSIFIED1020, 1024HYPOTHETICAL 99.3 KD PROTEIN IN MTR4-GYP6 INTERGENICREGION120580217268 (5755, 5756)Novel Protein sim. GBank gi|1352984|sp|P47044|YJF5_YEAST - UNCLASSIFIED1003, 1008, 1020, 1022,HYPOTHETICAL 26.9 KD PROTEIN IN BTN1-PEP8 INTERGENIC1024, 1035REGION120678757501 (4597, 4598)Novel Protein sim. GBank gi|1352989|sp|P47037|SMC3_YEAST - UNCLASSIFIED1041CHROMOSOME SEGREGATION PROTEIN SMC3 (DA-BOX PROTEINSMC3)12078499085 (8377, 8378)Novel Protein sim. GBank gi|1352991|sp|P47035|YJH6_YEAST - UNCLASSIFIED1020, 1031HYPOTHETICAL 128.5 KD PROTEIN IN SCP160-SMC3 INTERGENICREGION120812829405 (2879, 2880)Novel Protein sim. GBank gi|1353040|sp|P46985|YJS3_YEAST - UNCLASSIFIED1028HYPOTHETICAL 47.8 KD PROTEIN IN SWE1-ATP12 INTERGENICREGION120979827901 (1813, 1814)Novel Protein sim. GBank gi|135514|sp|P06333|TCB1_RABIT - T-CELLUNCLASSIFIED1002, 1006RECEPTOR BETA CHAIN PRECURSOR (ANA 11)121079114433 (3251, 3252)Novel Protein sim. GBank gi|135514|sp|P06333|TCB1_RABIT - T-CELLUNCLASSIFIED1041RECEPTOR BETA CHAIN PRECURSOR (ANA 11)121178781913 (3323, 3324)Novel Protein sim. GBank gi|135969|sp|P21269|CCA1_YEAST - TRNAUNCLASSIFIED1007NUCLEOTIDYLTRANSFERASE PRECURSOR (TRNAADENYLYLTRANSFERASE) (TRNA CCA-PYROPHOSPHORYLASE)(CCA-ADDING ENZYME)121285817924 (8597, 8598)Novel Protein sim. GBank gi|1360914|pir||D56279 - coxL 3′-regionUNCLASSIFIED1017hypothetical protein - Pseudomonas carboxydovorans121320292767 (823, 824)Novel Protein sim. GBank gi|1361153|pir||S56602 - hypothetical proteinUNCLASSIFIED1031o211 - Escherichia coli121427981679 (2195, 2196)Novel Protein sim. GBank gi|1361210|pir||S56383 - lysyl-tRNA synthetaseUNCLASSIFIED1004homolog protein genX - Escherichia coli121579841698 (89, 90)Novel Protein sim. GBank gi|1361224|pir||S56597 - peptide N-UNCLASSIFIED1041acetyltransferase (EC 2.3.1.—) riml - Escherichia coli121627366674 (3367, 3368)Novel Protein sim. GBank gi|136242|sp|P15565|TRM1_YEAST - N2, N2-UNCLASSIFIED1020DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE PRECURSOR121747652223 (7991, 7992)Novel Protein sim. GBank gi|1364110|pir||S57490 - molybdopterinUNCLASSIFIED1026cofactor synthesis protein - Arthrobacter nicotinovorans (fragment)121829686789 (2183, 2184)Novel Protein sim. GBank gi|137616|sp|P03708|TERL_LAMBD - UNCLASSIFIED1035TERMINASE LARGE SUBUNIT (DNA PACKAGING PROTEIN A) (GPA)121910355461 (1093, 1094)Novel Protein sim. GBank gi|139859|sp|P07859|XYLS_PSEPU - UNCLASSIFIED1036XYLDLEGF OPERON TRANSCRIPTIONAL ACTIVATOR122017682824 (7251, 7252)Novel Protein sim. GBank gi|140372|sp|P25569|YCD9_YEAST - UNCLASSIFIED1036HYPOTHETICAL 86.0 KD PROTEIN IN GLK1-SRO9 INTERGENICREGION122127961532 (4571, 4572)Novel Protein sim. GBank gi|140449|sp|P25349|YCP4_YEAST - UNCLASSIFIED1004HYPOTHETICAL 26.4 KD PROTEIN IN CDC10-CIT2 INTERGENICREGION122278382668 (1551, 1552)Novel Protein sim. GBank gi|140499|sp|P25627|YCT7_YEAST - UNCLASSIFIED1002PUTATIVE 30.7 KD METHYLTRANSFERASE IN TSM1-ARE1INTERGENIC REGION122310139501 (7153, 7154)Novel Protein sim. GBank gi|141308|sp|P24562|YPT5_PSEAE - UNCLASSIFIED1015HYPOTHETICAL 24.5 KD PROTEIN IN PILT 5′REGION (ORF5)122479832459 (35, 36)Novel Protein sim. GBank gi|141515|sp|P25639|YCV1_YEAST - UNCLASSIFIED1006, 1015, 1021, 1041HYPOTHETICAL 65.0 KD PROTEIN IN PWP2-SUP61 INTERGENICREGION122579194684 (5007, 5008)Novel Protein sim. GBank gi|142856 (M96343) - MreC protein [BacillusUNCLASSIFIED1022subtilis]122621392310 (2121, 2122)Novel Protein sim. GBank gi|1652190|dbj|BAA17114| - (D90903) FatUNCLASSIFIED1020protein [Synechocystis sp.]122778971760 (7603, 7604)Novel Protein sim. GBank gi|1652359|dbj|BAA17282| - (D90904)UNCLASSIFIED1006hypothetical protein [Synechocystis sp.]122877517367 (3317, 3318)Novel Protein sim. GBank gi|1652721|dbj|BAA17641| - (D90907),UNCLASSIFIED1009hypothetical protein [Synechocystis sp.]122937800949 (3341, 3342)Novel Protein sim. GBank gi|1653898|dbj|BAA18808| - (D90917)UNCLASSIFIED1010hypothetical protein [Synechocystis sp.]12308058034 (3197, 3198)Novel Protein sim. GBank gi|1655648|emb|CAB03747| - (Z81368)UNCLASSIFIED1008hypothetical protein Rv2411c [Mycobacterium tuberculosis]123127977068 (501, 502)Novel Protein sim. GBank gi|1655665|emb|CAB03731| - (Z81368)UNCLASSIFIED1020hypothetical protein Rv2395 [Mycobacterium tuberculosis]123278528471 (2835, 2836)Novel Protein sim. GBank gi|1655665|emb|CAB03731| - (Z81368)UNCLASSIFIED1027hypothetical protein Rv2395 [Mycobacterium tuberculosis]123317287840 (8459, 8460)Novel Protein sim. GBank gi|1655699|emb|CAA69032| - (Y07752)UNCLASSIFIED1006pherophorin-S [Volvox carteri]123420286667 (5773, 5774)Novel Protein sim. GBank gi|1655830 (U59446) - myrosinase-bindingUNCLASSIFIED1020protein related protein [Brassica napus]12358515876 (3545, 3546)Novel Protein sim. GBank gi|1657554|gb|AAB18082.1| - (U73857)UNCLASSIFIED1050hypothetical protein [Escherichia coli]123611398315 (7929, 7930)Novel Protein sim. GBank gi|1665720|dbj|BAA04134| - (D17312) diarrhealUNCLASSIFIED1004toxin [Bacillus cereus]123770451388 (1087, 1088)Novel Protein sim. GBank gi|1694865|emb|CAB05411| - (Z83018)UNCLASSIFIED1046hypothetical protein Rv2966c [Mycobacterium tuberculosis]123839527331 (2135, 2136)Novel Protein sim. GBank gi|1703287|sp|Q11010|AMPN_STRLI - UNCLASSIFIED1004AMINOPEPTIDASE N (LYSYL AMINOPEPTIDASE) (LYS-AP) (ALANINEAMINOPEPTIDASE)123957293758 (6717, 6718)Novel Protein sim. GBank gi|1705514|sp|P53226|BUD9_YEAST - BUDUNCLASSIFIED1020, 1024, 1031SITE SELECTION PROTEIN BUD9124035125857 (6169, 6170)Novel Protein sim. GBank gi|1706439|sp|P53388|DIP5_YEAST - UNCLASSIFIED1024DICARBOXYLIC AMINO ACID PERMEASE124120284542 (7213, 7214)Novel Protein sim. GBank gi|1707878|sp|P54260|GCST_SOLTU - UNCLASSIFIED1020AMINOMETHYL TRANSFERASE PRECURSOR (GLYCINE CLEAVAGESYSTEM T PROTEIN)124265466577 (6647, 6648)Novel Protein sim. GBank gi|1708467|sp|P54689|ILVE_HAEIN - UNCLASSIFIED1008BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE(TRANSAMINASE B) (BCAT)124378184318 (53, 54)Novel Protein sim. GBank gi|1709220|sp|P53792|SL52_RAT - UNCLASSIFIED1020, 1024SODIUM/GLUCOSE COTRANSPORTER 2 (NA(+)/GLUCOSECOTRANSPORTER 2) (LOW AFFINITY SODIUM-GLUCOSECOTRANSPORTER)12449875298 (5491, 5492)Novel Protein sim. GBank gi|1709675|sp|P52832|PMGI_PSESM - 2,3-UNCLASSIFIED1041BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATEMUTASE (PHOSPHOGLYCEROMUTASE) (BPG-INDEPENDENT PGAM)124529363896 (1331, 1332)Novel Protein sim. GBank gi|1709888|sp|P32606|PT27_YEAST - UNCLASSIFIED1041PUTATIVE MITOCHONDRIAL TRANSLATION SYSTEM COMPONENTPET12712466345797 (5859, 5860)Novel Protein sim. GBank gi|1710124 (U62279) - leucine-rich repeat-UNCLASSIFIED1055containing extracellular glycoprotein; contains six N-glycosylation sites[NX(S/T)][Sorghum bicolor]124752563343 (4645, 4646)Novel Protein sim. GBank gi|1710635|sp|P51862|ROM2_YEAST - RHO1UNCLASSIFIED1036, 1041GDP-GTP EXCHANGE PROTEIN 2124880425372 (3687, 3688)Novel Protein sim. GBank gi|171407 (M83540) - DNA52 [SaccharomycesUNCLASSIFIED1002, 1003, 1004, 1008,cerevisiae]1020, 1022, 1023, 1025,1028, 1031, 1041124980500805 (4953, 4954)Novel Protein sim. GBank gi|171732 (M14048) - histidine-tRNAUNCLASSIFIED1003, 1004, 1006, 1008,synthetase mitochondrial [Saccharomyces cerevisiae]1010, 1015, 1020, 1021,1022, 1028, 1031125080233117 (6873, 6874)Novel Protein sim. GBank gi|1722927|sp|Q10403|Y00R_MYCTU - UNCLASSIFIED1050HYPOTHETICAL 31.7 KD PROTEIN CY190.27125120395631 (7625, 7626)Novel Protein sim. GBank gi|1723055|sp|Q11019|Y07D_MYCTU - UNCLASSIFIED1003HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEINCY02B10.13125238406202 (5707, 5708)Novel Protein sim. GBank gi|1723184|sp|P39732|YAD1_YEAST - UNCLASSIFIED1006, 1024HYPOTHETICAL 86.6 KD PROTEIN IN PYK1-SNC1 INTERGENICREGION125378716228 (4699, 4700)Novel Protein sim. GBank gi|1723646|sp|P53208|YG19_YEAST - UNCLASSIFIED1015HYPOTHETICAL 37.9 KD PROTEIN IN MSB2-UGA1 INTERGENICREGION125457292728 (7061, 7062)Novel Protein sim. GBank gi|1723655|sp|P53217|YG1I_YEAST - UNCLASSIFIED1003, 1004, 1020, 1022,HYPOTHETICAL 33.3 KD PROTEIN IN VMA7-RPS31A INTERGENIC1024, 1031REGION125580502396 (3345, 3346)Novel Protein sim. GBank gi|1723660|sp|P53223|YG1P_YEAST - UNCLASSIFIED1002, 1004, 1007, 1010,HYPOTHETICAL 27.6 KD PROTEIN IN RPL26B-ACB1 INTERGENIC1020, 1021, 1024, 1028REGION125627929655 (2817, 2818)Novel Protein sim. GBank gi|1723691|sp|P53259|YG2Q_YEAST - UNCLASSIFIED1003, 1004, 1020, 1022,HYPOTHETICAL 38.8 KD PROTEIN IN MIC1-SRB5 INTERGENIC1051REGION125710311849 (1137, 1138)Novel Protein sim. GBank gi|1723730|sp|P53297|YG42_YEAST - UNCLASSIFIED1041HYPOTHETICAL 78.8 KD PROTEIN IN ATF2-RNR4 INTERGENICREGION125838908728 (1881, 1882)Novel Protein sim. GBank gi|1723762|sp|P53314|YG59_YEAST - UNCLASSIFIED1001, 1002, 1024HYPOTHETICAL 26.7 KD PROTEIN IN TDS4-MGA1 INTERGENICREGION125957292866 (5525, 5526)Novel Protein sim. GBank gi|1723927|sp|P53117|YGO6_YEAST - UNCLASSIFIED1004, 1020, 1022HYPOTHETICAL 34.7 KD PROTEIN IN RPL9A-TIP20 INTERGENICREGION126029225446 (4855, 4856)Novel Protein sim. GBank gi|1723969|sp|P53075|YGX8_YEAST - UNCLASSIFIED1006HYPOTHETICAL 66.9 KD PROTEIN IN SAP4-OST5 INTERGENICREGION126127838107 (6437, 6438)Novel Protein sim. GBank gi|1723978|sp|P53066|YGZ2_YEAST - UNCLASSIFIED1004HYPOTHETICAL 20.1 KD PROTEIN IN RTF1-CSE1 INTERGENICREGION128080505214 (8991, 8992)Novel Protein sim. GBank gi|1805408|dbj|BAA08970| - (D50453)UNCLASSIFIED1010homologues to nitrile hydratase region 3′-hypothetical protein P47K of P.chlororaphis [Bacillus subtilis]128182062248 (2803, 2804)Novel Protein sim. GBank gi|1841552 (U89336) - unknown [HomoUNCLASSIFIED1004, 1008, 1014, 1020,sapiens]1022, 1026, 1031, 1036,1041, 1050128279582448 (7769, 7770)Novel Protein sim. GBank gi|1870009|emb|CAB06860| - (Z92539)UNCLASSIFIED1022hypothetical protein Rv1019 [Mycobacterium tuberculosis]128385800377 (7057, 7058)Novel Protein sim. GBank gi|1872200 (U22376) - alternatively splicedUNCLASSIFIED1023product using exon 13A [Homo sapiens]128470287165 (8165, 8166)Novel Protein sim. GBank gi|1877309|emb|CAB07152| - (Z92774) arsB2UNCLASSIFIED1007[Mycobacterium tuberculosis]128580503107 (2991, 2992)Novel Protein sim. GBank gi|1877310|emb|CAB07153| - (Z92774)UNCLASSIFIED1004, 1006, 1010, 1031,hypothetical protein Rv3579c [Mycobacterium tuberculosis]1041, 1051128679574310 (5127, 5128)Novel Protein sim. GBank gi|1881338|dbj|BAA19365| - (AB001488)UNCLASSIFIED1028PROBABLE INTEGRAL MEMBRANE PROTEIN, SIMILAR TOCHLORAMPHENICOL RESISTANCE PROTEIN OF STREPTOMYCESVENEZUELAE. [Bacillus subtilis]128710329996 (7763, 7764)Novel Protein sim. GBank gi|1881338|dbj|BAA19365| - (AB001488)UNCLASSIFIED1002PROBABLE INTEGRAL MEMBRANE PROTEIN, SIMILAR TOCHLORAMPHENICOL RESISTANCE PROTEIN OF STREPTOMYCESVENEZUELAE. [Bacillus subtilis]128839384711 (8985, 8986)Novel Protein sim. GBank gi|1881738 (U89688) - myosin-I binding proteinUNCLASSIFIED1003, 1010, 1031Acan125 [Acanthamoeba castellanil]128995361506 (777, 778)Novel Protein sim. GBank gi|188864 (M74027) - mucin [Homo sapiens]UNCLASSIFIED1004, 1006, 1020, 1022,1025, 1028, 1031, 1036,1046, 1055129079863655 (3087, 3088)Novel Protein sim. GBank gi|1890588|emb|CAB01936| - (Z79692) ExpE3UNCLASSIFIED1010[Sinorhizobium meliloti]129110234146 (8001, 8002)Novel Protein sim. GBank gi|1929089|emb|CAB07817| - (Z93777)UNCLASSIFIED1036hypothetical protein Rv1215c [Mycobacterium tuberculosis]129216299709 (8525, 8526)Novel Protein sim. GBank gi|1934732 (U96128) - UDP-galactopyranoseUNCLASSIFIED1022mutase [Mycobacterium tuberculosis]129332338166 (5339, 5340)Novel Protein sim. GBank gi|1934826|emb|CAB07947| - (Z93938)UNCLASSIFIED1026unknown [Bacillus subtilis]129411615487 (6413, 6414)Novel Protein sim. GBank gi|2055394 (U87306) - transmembraneUNCLASSIFIED1022receptor UNC5H2 [Rattus norvegicus]129520414023 (6547, 6548)Novel Protein sim. GBank gi|2072667|emb|CAB08319| - (Z95120)UNCLASSIFIED1008hypothetical protein Rv3218 [Mycobacterium tuberculosis]129680252586 (2699, 2700)Novel Protein sim. GBank gi|2072679|emb|CAB08310| - (Z95120) moeZUNCLASSIFIED1022, 1050[Mycobacterium tuberculosis]129735009859 (3043, 3044)Novel Protein sim. GBank gi|2072958 (U93567) - putative p150 [HomoUNCLASSIFIED1035sapiens]129810330910 (211, 212)Novel Protein sim. GBank gi|2072961 (U93568) - putative p150 [HomoUNCLASSIFIED1035sapiens]129965674732 (8893, 8894)Novel Protein sim. GBank gi|2072967 (U93570) - putative p150 [HomoUNCLASSIFIED1014sapiens]130029681887 (8987, 8988)Novel Protein sim. GBank gi|2072967 (U93570) - putative p150 [HomoUNCLASSIFIED1007sapiens]130180028197 (4431, 4432)Novel Protein sim. GBank gi|2078483 (U43200) - antifreeze glycopeptideUNCLASSIFIED1004, 1007AFGP polyprotein precursor [Boreogadus saida]130278462526 (8813, 8814)Novel Protein sim. GBank gi|2088669 (AF003130) - F55A12.9 geneUNCLASSIFIED1006product [Caenorhabditis elegans]130313084790 (7357, 7358)Novel Protein sim. GBank gi|2094844|emb|CAB08571| - (Z95324) fbaUNCLASSIFIED1025[Mycobacterium tuberculosis]130439517709 (787, 788)Novel Protein sim. GBank gi|2098748 (U94336) - oxidative stressUNCLASSIFIED1004transcriptional regulator, OxyR [Xanthomonas campestris]130546661837 (3055, 3056)Novel Protein sim. GBank gi|2104600|emb|CAB08809| - (Z95398)UNCLASSIFIED1037unknown [Mycobacterium leprae]130614999136 (4983, 4984)Novel Protein sim. GBank gi|2105069|emb|CAB08823| - (Z95436) mesJUNCLASSIFIED1022[Mycobacterium tuberculosis]130778749845 (1875, 1876)Novel Protein sim. GBank gi|2105134 (U64984) - unknownUNCLASSIFIED1024[Bacteriophage Mx8]130827227955 (4661, 4662)Novel Protein sim. GBank gi|2114014|emb|CAB08963| - (Z95558)UNCLASSIFIED1020hypothetical protein Rv0552 [Mycobacterium tuberculosis]130932728669 (4135, 4136)Novel Protein sim. GBank gi|2114425 (U92466) - similar to SynechocystisUNCLASSIFIED1001sp. hypothetical protein, encoded by GenBank Accession NumberD64006 [Bacillus subtilis]131079457145 (1527, 1528)Novel Protein sim. GBank gi|2117195|emb|CAB09016| - (Z95584)UNCLASSIFIED1028hypothetical protein Rv1157c [Mycobacterium tuberculosis]131180428870 (4677, 4678)Novel Protein sim. GBank gi|2117275|emb|CAB09104| - (Z95618)UNCLASSIFIED1008, 1020, 1021, 1024,hypothetical protein Rv0807 [Mycobacterium tuberculosis]1031, 1035131280019922 (4561, 4562)Novel Protein sim. GBank gi|2119159|pir||I50694 - alpha-1 collagen typeUNCLASSIFIED1020III - chicken (fragment)131366726833 (8117, 8118)Novel Protein sim. GBank gi|2127477|pir||JC5158 - cell division proteinUNCLASSIFIED1007ftsX - Mycobacterium tuberculosis131471773040 (281, 282)Novel Protein sim. GBank gi|2129099|pir||G64413 - magnesium-chelataseUNCLASSIFIED1024, 1026homolog - Methanococcus jannaschii131530808488 (421, 422)Novel Protein sim. GBank gi|2129099|pir||G64413 - magnesium-chelataseUNCLASSIFIED1024homolog - Methanococcus jannaschii131656513041 (4419, 4420)Novel Protein sim. GBank gi|2129478|pir||S51939 - chitinase (ECUNCLASSIFIED10083.2.1.14) precursor - beet131716534688 (7675, 7676)Novel Protein sim. GBank gi|2129478|pir||S51939 - chitinase (ECUNCLASSIFIED10063.2.1.14) precursor - beet131878735025 (6727, 6728)Novel Protein sim. GBank gi|2131321|pir||S67592 - hypothetical proteinUNCLASSIFIED1015YDL057w - yeast (Saccharomyces cerevisiae)131980230507 (7889, 7890)Novel Protein sim. GBank gi|2131351|pir||S61051 - hypothetical proteinUNCLASSIFIED1001, 1003, 1004, 1006,YDL162c - yeast (Saccharomyces cerevisiae)1015132078786516 (3383, 3384)Novel Protein sim. GBank gi|2131456|pir||S61174 - hypothetical proteinUNCLASSIFIED1020YDR379w - yeast (Saccharomyces cerevisiae)132138863784 (2647, 2648)Novel Protein sim. GBank gi|2131833|pir||S69863 - hypothetical proteinUNCLASSIFIED1020, 1021YMR031w-a - yeast (Saccharomyces cerevisiae)132227963711 (8977, 8978)Novel Protein sim. GBank gi|2131997|pir||S66717 - hypothetical proteinUNCLASSIFIED1008, 1020, 1028, 1031YOL034w - yeast (Saccharomyces cerevisiae)132379110964 (7745, 7746)Novel Protein sim. GBank gi|2132008|pir||S66765 - hypothetical proteinUNCLASSIFIED1014, 1041YOL072w - yeast (Saccharomyces cerevisiae)132456148277 (3429, 3430)Novel Protein sim. GBank gi|2132066|pir||S60988 - hypothetical proteinUNCLASSIFIED1002, 1004, 1008, 1015,YOR134w - yeast (Saccharomyces cerevisiae)1020, 1031132529347669 (8463, 8464)Novel Protein sim. GBank gi|2132143|pir||S67284 - hypothetical proteinUNCLASSIFIED1020YOR372c - yeast (Saccharomyces cerevisiae)132678726739 (8763, 8764)Novel Protein sim. GBank gi|2132164|pir||S62027 - hypothetical proteinUNCLASSIFIED1006, 1020, 1024YPL049c - yeast (Saccharomyces cerevisiae)132727354572 (8691, 8692)Novel Protein sim. GBank gi|2132245|pir||S61019 - hypothetical proteinUNCLASSIFIED1007YPL245w - yeast (Saccharomyces cerevisiae)132839434995 (7629, 7630)Novel Protein sim. GBank gi|2132312|pir||S59829 - hypothetical proteinUNCLASSIFIED1004, 1008, 1020, 1022,YPR171w - yeast (Saccharomyces cerevisiae)1025, 1035, 1041132924114486 (587, 588)Novel Protein sim. GBank gi|2132393|pir||S64015 - pleiotropic drugUNCLASSIFIED1024resistance control protein PDR1 - yeast (Saccharomyces cerevisiae)133078788035 (3725, 3726)Novel Protein sim. GBank gi|2132466|pir||S67803 - probable membraneUNCLASSIFIED1020protein YDL239c - yeast (Saccharomyces cerevisiae)133139707435 (7093, 7094)Novel Protein sim. GBank gi|2132683|pir||S64851 - probable membraneUNCLASSIFIED1006protein YLR024c - yeast (Saccharomyces cerevisiae)133280218401 (7901, 7902)Novel Protein sim. GBank gi|2132663|pir||S64851 - probable membraneUNCLASSIFIED1004, 1020, 1022protein YLR024c - yeast (Saccharomyces cerevisiae)133371793849 (6481, 6482)Novel Protein sim. GBank gi|2132828|pir||S66714 - probable membraneUNCLASSIFIED1007protein YOL031c - yeast (Saccharomyces cerevisiae)133480250262 (4717, 4718)Novel Protein sim. GBank gi|2132934|pir||S67175 - probable membraneUNCLASSIFIED1004protein YOR273c - yeast (Saccharomyces cerevisiae)133527847010 (6575, 6576)Novel Protein sim. GBank gi|2132957|pir||S67290 - probable membraneUNCLASSIFIED1003, 1022, 1031protein YOR378w - yeast (Saccharomyces cerevisiae)133639568617 (7661, 7662)Novel Protein sim. GBank gi|2133032|pir||S69034 - probable membraneUNCLASSIFIED1003, 1004protein YPR147c - yeast (Saccharomyces cerevisiae)133778728781 (7257, 7258)Novel Protein sim. GBank gi|2133036|pir||S59823 - probable membraneUNCLASSIFIED1006protein YPR164w - yeast (Saccharomyces cerevisiae)133880243781 (4587, 4588)Novel Protein sim. GBank gi|2135121|pir||A49674 - flightless-I homolog - UNCLASSIFIED1004human (fragment)133979572341 (5883, 5884)Novel Protein sim. GBank gi|2135847|pir||I59234 - octamer bindingUNCLASSIFIED1015transcription factor 1 - human134079161087 (5527, 5528)Novel Protein sim. GBank gi|2137044|pir||I46884 - unknown protein - UNCLASSIFIED1003rabbit (fragment)134117244419 (275, 276)Novel Protein sim. GBank gi|2143868|pir||I59402 - NAB1 - ratUNCLASSIFIED1015, 1022134237804391 (723, 724)Novel Protein sim. GBank gi|2144012|pir||S70642 - ubiquitin ligase Nedd4 - UNCLASSIFIED1055rat (fragment)134378381454 (4043, 4044)Novel Protein sim. GBank gi|2181972|emb|CAB09492| - (Z96072)UNCLASSIFIED1024, 1026hypothetical protein Rv2681 [Mycobacterium tuberculosis]134478675426 (7225, 7226)Novel Protein sim. GBank gi|218496|dbj|BAA02301| - (D12917) aUNCLASSIFIED1015component of the pheromone signal transduction pathway[Saccharomyces cerevisiae]134513085101 (4089, 4090)Novel Protein sim. GBank gi|2191127 (AF007269) - A_IG002N01.1 geneUNCLASSIFIED1022product [Arabidopsis thaliana)134678490869 (7829, 7830)Novel Protein sim. GBank gi|2193870|dbj|BAA204191 - (D84391) reverseUNCLASSIFIED1027transcriptase [Mus musculus]134720758023 (6551, 6552)Novel Protein sim. GBank gi|2193927|emb|CA809594| - (Z96800)UNCLASSIFIED1020hypothetical protein Rv0306 [Mycobacterium tuberculosis]134870287245 (1277, 1278)Novel Protein sim. GBank gi|2213518|emb|CAB09748| - (Z97050)UNCLASSIFIED1007hypothetical protein Rv0181c [Mycobacterium tuberculosis]134920474010 (5945, 5946)Novel Protein sim. GBank gi|2222715|emb|CAB09911| - (Z97179)UNCLASSIFIED1008hypothetical protein MLCL383.37 [Mycobacterium leprae]135046860900 (4549, 4550)Novel Protein sim. GBank gi|2224699|dbj|BAA20833| - (AB002377)UNCLASSIFIED1051KIAA0379 [Homo sapiens]135139731041 (5035, 5036)Novel Protein sim. GBank gi|2224832|emb|CAB10018| - (Z97188)UNCLASSIFIED1024hypothetical protein Rv3813c [Mycobacterium tuberculosis]135279464102 (7891, 7892)Novel Protein sim. GBank gi|2225947|emb|CAB10053| - (Z97193)UNCLASSIFIED1025, 1026, 1041hypothetical protein Rv1913 [Mycobacterium tuberculosis]135379427160 (625, 626)Novel Protein sim. GBank gi|2232045 (U97516) - rubisco operonUNCLASSIFIED1015transcriptional regulator [Synechococcus PCC7002]135425251803 (5705, 5706)Novel Protein sim. GBank gi|2243022|dbj|BAA21086| - (AB004855)UNCLASSIFIED1006, 1024inhibition of morphological differentiation [Streptomyces cyaneus]13559678386 (4003, 4004)Novel Protein sim. GBank gi|2244683|emb|CAA69113| - (Y07786)UNCLASSIFIED1041ORF43x9 [Vibrio cholerae]135679844068 (951, 952)Novel Protein sim. GBank gi|225047|prf||1207289A - reverseUNCLASSIFIED1041transcriptase related protein [Homo sapiens]135719755599 (7159, 7160)Novel Protein sim. GBank gi|2253054|emb‥CAB10705| - (Z97559)UNCLASSIFIED1001hypothetical protein Rv2114 [Mycobacterium tuberculosis]135888094659 (4297, 4298)Novel Protein sim. GBank gi|2293165 (AF008220) - asparagine synthaseUNCLASSIFIED1008[Bacillus subtilis]135917903910 (3963, 3964)Novel Protein sim. GBank gi|2293566 (AF012896) - ADP-ribosylationUNCLASSIFIED1006, 1051factor 1 [Oryza sativa]136013883880 (3325, 3326)Novel Protein sim. GBank gi|2314239|gb|AAD08134.1| - (AE000615) H.UNCLASSIFIED1050pylori predicted coding region HP1083 [Helicobacter pylori 26695]136185518681 (6517, 6518)Novel Protein sim. GBank gi|2314416|gb|AAD08296.1| - (AE000630)UNCLASSIFIED1046oligopeptide ABC transporter, periplasmic oligopeptide-binding protein(oppA) [Helicobacter pylori 26695]13623297187 (8955, 8956)Novel Protein sim. GBank gi|2314862|gb|AAD08525.1| - (AE000647)UNCLASSIFIED1035, 1051conserved hypothetical protein [Helicobacter pylori 26695]136381022707 (2111, 2112)Novel Protein sim. GBank gi|2314688|gb|AAD08549.1| - (AE000649)UNCLASSIFIED1051conserved hypothetical ATP-binding protein [Helicobacter pylori 26695]136466441044 (1705, 1706)Novel Protein sim. GBank gi|2317934 (U97553) - unknown [murineUNCLASSIFIED1002, 1020herpesvirus 68]136529213316 (4671, 4672)Novel Protein sim. GBank gi|2318062 (AF012532) - YeeB [BacillusUNCLASSIFIED1024subtilis]136679612771 (8435, 8436)Novel Protein sim. GBank gi|2326752|emb|CAB10966| - (Z98268)UNCLASSIFIED1002hypothetical protein Rv1709 [Mycobacteilum tuberculosis]136780071779 (1045, 1046)Novel Protein sim. GBank gi|2326943|emb|CAA74576| - (Y14163) fizzy-UNCLASSIFIED1020related protein [Xenopus laevis]136837003586 (957, 958)Novel Protein sim. GBank gi|2337843|emb|CAB11337| - (Z98604)UNCLASSIFIED1026hypothetical protein MLCB2052.39 [Mycobacterium leprae]136979172972 (6663, 6664)Novel Protein sim. GBank gi|2342601|emb|CAA61605| - (X89442) peptideUNCLASSIFIED1028synthetase [Metarhizium anisopliae]137080062689 (5537, 5538)Novel Protein sim. GBank gi|2342612|emb|CAB11383| - (Z98741)UNCLASSIFIED1008, 1031hypothetical protein MLCB22.18 [Mycobacterium leprae]137117294715 (3659, 3660)Novel Protein sim. GBank gi|2351849 (U93357) - 40 kDa heat shockUNCLASSIFIED1036chaperone protein [Halobacterium cutirubrum]137213085422 (5511, 5512)Novel Protein sim. GBank gi|238781|bbs|65093 - (S65091) cyclic AMp-UNCLASSIFIED1025regulated phosphoprotein, ARPP-21 [rats, Peptide, 88 aa] [Rattus sp.]137378470366 (3669, 3670)Novel Protein sim. GBank gi|2435511 (AF024504) - contains similarity toUNCLASSIFIED1024prolyl 4-hydroxylase alpha subunit [Arabidopsis thaliana]137480496730 (1323, 1324)Novel Protein sim. GBank gi|244239|bbs|78626 - (S78624) YCR592UNCLASSIFIED1002, 1010, 1020, 1031,[Saccharomyces cerevisiae=yeast, Peptide, 1226 aa] [Saccharomyces1041cerevisiae]13759403089 (1085, 1086)Novel Protein sim. GBank gi|2459978 (AF010150) - PcrD [PseudomonasUNCLASSIFIED1041aeruginosa]137627240528 (6889, 6890)Novel Protein sim. GBank gi|2464905|emb|CAB16805.1| - (Z99708) minorUNCLASSIFIED1041allergen [Arabidopsis thaliana]137780483956 (1689, 1690)Novel Protein sim. GBank gi|2492588|sp|Q50734|YOA4_MYCTU - UNCLASSIFIED1010HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEINCY9C4.04C137817947584 (2285, 2286)Novel Protein sim. GBank gi|2492885|sp|P77495|PRPE_ECOLI - PRPEUNCLASSIFIED1001PROTEIN137947652732 (5123, 5124)Novel Protein sim. GBank gi|2492983|sp|P94556|MURI_BACSU - UNCLASSIFIED1026GLUTAMATE RACEMASE138033204977 (7297, 7298)Novel Protein sim. GBank gi|2494548|sp|Q51463|FLIF_PSEAE - UNCLASSIFIED1024FLAGELLAR M-RING PROTEIN138120100736 (3053, 3054)Novel Protein sim. GBank gi|2495183|sp|Q51887|HEMX_PROMI - UNCLASSIFIED1008PUTATIVE UROPORPHYRIN-III C-METHYLTRANSFERASE (UROGENIII METHYLASE)138227804781 (1039, 1040)Novel Protein sim. GBank gi|2496226|sp|Q60283|YZ24_METJA - UNCLASSIFIED1022HYPOTHETICAL PROTEIN MJECL24138311102283 (1157, 1158)Novel Protein sim. GBank gi|2496709|sp|P55564|Y4ME_RHISN - UNCLASSIFIED1004HYPOTHETICAL 45.7 KD PROTEIN Y4ME138487112445 (2521, 2522)Novel Protein sim. GBank gi|2497117|sp|Q03690|IF31_YEAST - UNCLASSIFIED1020, 1035EUKARYOTIC TRANSLATION INITIATION FACTOR 3 ALPHA SUBUNIT(EIF-3 ALPHA) (EIF3 P135) (TRANSLATION INITIATION FACTOR EIF3,P135 SUBUNIT)138565686809 (599, 600)Novel Protein sim. GBank gi|2497183|sp|Q04336|YM54_YEAST - UNCLASSIFIED1000, 1008HYPOTHETICAL 126.6 KD PROTEIN IN RPL39-VTI1 INTERGENICREGION138627788025 (709, 710)Novel Protein sim. GBank gi|2497191|sp|Q03660|YM66_YEAST - UNCLASSIFIED1022HYPOTHETICAL 128.1 KD PROTEIN IN GUA1-ERG8 INTERGENICREGION138780053984 (8333, 8334)Novel Protein sim. GBank gi|2497281|sp|P72689|IF2_SYNY3 - UNCLASSIFIED1008TRANSLATION INITIATION FACTOR IF-2138880233293 (3655, 3656)Novel Protein sim. GBank gi|2498298|sp|Q12387|DEC1_YEAST - DEC1UNCLASSIFIED1006, 1007, 1008, 1015,PROTEIN (MDM20 PROTEIN)1020, 1023138928375903 (7607, 7608)Novel Protein sim. GBank gi|2498506|sp|Q12446|LA17_YEAST - UNCLASSIFIED1041PROLINE-RICH PROTEIN LAS17139010063089 (3741, 3742)Novel Protein sim. GBank gi|2498598|sp|Q59650|MURE_PSEAE - UDP-UNCLASSIFIED1015N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-2.6-DIAMINOPIMELATE LIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDESYNTHETASE)139166376623 (4325, 4326)Novel Protein sim. GBank gi|2500969|sp|Q50649|SYD_MYCTU - UNCLASSIFIED1007ASPARTYL-TRNA SYNTHETASE (ASPARTATE-TRNA LIGASE)(ASPRS)139280046707 (8683, 8684)Novel Protein sim. GBank gi|2500970|sp|Q51422|SYD_PSEAE - UNCLASSIFIED1022ASPARTYL-TRNA SYNTHETASE (ASPARTATE-TRNA LIGASE)(ASPRS)139380062922 (7659, 7660)Novel Protein sim. GBank gi|2501040|sp|O05814|SYP_MYCTU - UNCLASSIFIED1020, 1022PROLYL-TRNA SYNTHETASE (PROLINE-TRNA LIGASE) (PRORS)139480583862 (8649, 8650)Novel Protein sim. GBank gi|2501190|sp|Q41739|TH42_MAIZE - UNCLASSIFIED1007, 1020, 1024, 1028,THIAMINE BIOSYNTHETIC ENZYME 1-2 PRECURSOR1047, 1055139579826267 (7283, 7284)Novel Protein sim. GBank gi|2501603|sp|Q08647|YO43_YEAST - UNCLASSIFIED1041HYPOTHETICAL 77.0 KD PROTEIN IN HES1-SEC63 INTERGENICREGION139679406465 (8645, 8646)Novel Protein sim. GBank gi|2506592|sp|P45568|DXR_ECOLI - 1-DEOXYUNCLASSIFIED1014, 1028D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE (DXPREDUCTOISOMERASE)139739550271 (2023, 2024)Novel Protein sim. GBank gi|2507103|sp|P43670|PQIA_ECOLIUNCLASSIFIED1036PARAQUAT-INDUCIBLE PROTEIN A139878463315 (2237, 2238)Novel Protein sim. GBank gi|2507510|sp|P39173|UP08_ECOLI - UNCLASSIFIED1006UNKNOWN PROTEIN FROM 2D-PAGE (SPOTS T26/PR37)139936622848 (1071, 1072)Novel Protein sim. GBank gi|2507513|sp|P53088|YGW1_YEAST - UNCLASSIFIED1031HYPOTHETICAL 35.5 KD PROTEIN IN VAM7-YPT32 INTERGENICREGION140071088713 (8831, 8832)Novel Protein sim. GBank gi|2578381|emb|CAA15466| - (AL008609)UNCLASSIFIED1050hypothetical protein MLCB1788.34c [Mycobacterium leprae]140177588758 (5547, 5548)Novel Protein sim. GBank gi|2582422|gb|AAB82564.1| - (AF026067)UNCLASSIFIED1046FMNH2-dependent methanesulfonate sulfonatase [Pseudomonasaeruginosa]140210146972 (8081, 8082)Novel Protein sim. GBank gi|2589196 (AF008553) - Glu-tRNAGlnUNCLASSIFIED1051amidotransferase subunit B [Bacillus subtilis]140379264251 (4757, 4758)Novel Protein sim. GBank gi|2598593|emb|CAA75591| - (Y15369) MtNI2UNCLASSIFIED1022[Medicago truncatula]140480081087 (1937, 1938)Novel Protein sim. GBank gi|2612821|emb|CAA04438| - (AJ000978)UNCLASSIFIED1031, 1041cis/trans isomerase [Pseudomonas putida]140585518697 (2667, 2668)Novel Protein sim. GBank gi|2619029 (AF027868) - YoaR [BacillusUNCLASSIFIED1046subtilis]140620736837 (8453, 8454)Novel Protein sim. GBank gi|2623258 (AF030941) - putative secretedUNCLASSIFIED1020protein [Neisseria meningitidis]140711077011 (999, 1000)Novel Protein sim. GBank gi|2632098|emb|CAA75667| - (Y15513) ProdosUNCLASSIFIED1020protein [Drosophila melanogaster]14089860215 (6187, 6188)Novel Protein sim. GBank gi|2635771|emb|CAB15264| - (Z99120) similarUNCLASSIFIED1006to ABC transporter (ATP-binding protein) [Bacillus subtilis]14099742433 (8019, 8020)Novel Protein sim. GBank gi|2645674 (AF031955) - krupple-related zincUNCLASSIFIED1036finger protein [Mus musculus]141020729461 (2545, 2546)Novel Protein sim. GBank gi|2648206 (AE000944) - maoC protein (maoC)UNCLASSIFIED1004[Archaeoglobus fulgidus]141127977651 (7001, 7002)Novel Protein sim. GBank gi|2649977 (AE001060) - conservedUNCLASSIFIED1004hypothetical protein [Archaeoglobus fulgidus]141265898533 (3967, 3968)Novel Protein sim. GBank gi|2661679|emb|CAA15784| - (AL009199)UNCLASSIFIED1014probable transmembrane transport protein [Streptomyces coelicolor]141379110032 (843, 844)Novel Protein sim. GBank gi|2661689|emb|CAA15793| - (AL009204) DNAUNCLASSIFIED1008, 1041gyrase-like protein [Streptomyces coelicolor]141465668313 (6823, 6824)Novel Protein sim. GBank gi|2661697|emb|CAA15801| - (AL009204)UNCLASSIFIED1014hypothetical protein SC9B10.11 [Streptomyces coelicolor]141579574554 (8397, 8398)Novel Protein sim. GBank gi|2661708|emb|CAA15812| - (AL009204)UNCLASSIFIED1028hypothetical protein SC9B10.22c [Streptomyces coelicolor]141678386939 (3995, 3998)Novel Protein sim. GBank gi|2661711|emb|CAA15815| - (AL00920.4)UNCLASSIFIED1006hypothetical protein SC9B10.25c [Streptomyces coelicolor]141727354547 (3889, 3870)Novel Protein sim. GBank gi|2673908 (AC002561) - hypothetical proteinUNCLASSIFIED1024[Arabidopsis thaliana]141817931585 (217, 218)Novel Protein sim. GBank gi|2723362 (AF023459) - lustrin A [HallotisUNCLASSIFIED1002rufescens]141978763436 (3677, 3678)Novel Protein sim. GBank gi|2760121|dbj|BAA24179| - (AB002405) LAK-UNCLASSIFIED1015, 10204p [Homo sapiens]142038069985 (5501, 5502)Novel Protein sim. GBank gi|2791626|emb|CAA16113.1| - (AL021287)UNCLASSIFIED1014fixB [Mycobacterium tuberculosis]142120753533 (4749, 4750)Novel Protein sim. GBank gi|2791647|emb|CAA16134.1| - (AL021287)UNCLASSIFIED1003hypothetical protein Rv3049c [Mycobacterium tuberculosis]142211090532 (6973, 6974)Novel Protein sim. GBank gi|2811058|sp|O07931|YRAM_BACSU - UNCLASSIFIED1004HYPOTHETICAL 39.5 KD PROTEIN IN SIGZ-CSN INTERGENICREGION142317299877 (3883, 3884)Novel Protein sim. GBank gi|2828673|gb|AAC00183.1| - (AF038816)UNCLASSIFIED1036WbbK [Serratia marcescens]142411615829 (1935, 1936)Novel Protein sim. GBank gi|283032|pir||S22456 - hydroxyproline-richUNCLASSIFIED1014glycoprotein - perennial teosinte142527368323 (2157, 2158)Novel Protein sim. GBank gi|2833204|sp|Q06063|YL05_YEAST - UNCLASSIFIED1015, 1021HYPOTHETICAL 41.7 KD PROTEIN IN SFP1-CTR3 INTERGENICREGION142627981996 (7329, 7330)Novel Protein sim. GBank gi|2851439|sp|P27851|UBIE_ECOLI - UNCLASSIFIED1004UBIQUINONE/MENAQUINONE BIOSYNTHESISMETHLYTRANSFERASE UBIE142710371060 (7665, 7666)Novel Protein sim. GBank gi|2851589|sp|P42616|YQJC_ECOLI - UNCLASSIFIED1055HYPOTHETICAL 14.5 KD PROTEIN IN EXUR-TDCC INTERGENICREGION PRECURSOR142879810756 (5713, 5714)Novel Protein sim. GBank gi|2853603 (AF031898) - MotB [PseudomonasUNCLASSIFIED1002putida]142980085671 (5087, 5088)Novel Protein sim. GBank gi|2887423|dbj|BAA24854| - (AB007884)UNCLASSIFIED1051KIAA0424 [Homo sapiens]143035106788 (1635, 1636)Novel Protein sim. GBank gi|2894186|emb|CAA11792.1| - (AJ223999)UNCLASSIFIED1024PCZA363.1 [Amycolatopsis orientalis]143180496412 (4949, 4950)Novel Protein sim. GBank gi|2894206|emb|CAA17072| - (AL021840)UNCLASSIFIED1010hypothetical protein Rv3258c [Mycobacterium tuberculosis]143217942491 (3519, 3520)Novel Protein sim. GBank gi|2895756 (AF045160) - hypoxia-inducibleUNCLASSIFIED1022factor 1 alpha related factor [Mus musculus]143380504037 (8703, 8704)Novel Protein sim. GBank gi|2896688|emb|CAA17167.1| - (AL021897)UNCLASSIFIED1010hypothetical protein Rv1051c [Mycobacterium tuberculosis]143479574675 (6943, 6944)Novel Protein sim. GBank gi|2909479|emb|CAA17365| - (AL021930)UNCLASSIFIED1028hypothetical protein Rv0290 [Mycobacterium tuberculosis]143580200576 (6013, 6014)Novel Protein sim. GBank gi|2911274 (U20329) - spidroin 1 [NephilaUNCLASSIFIED1001, 1031, 1035clavipes]143637402674 (141, 142)Novel Protein sim. GBank gi|2911858 (AF047659) - No definition lineUNCLASSIFIED1020found [Caenorhabditis elegans]143725260874 (1769, 1770)Novel Protein sim. GBank gi|2916883|emb|CAA17631.1| - (AL022004)UNCLASSIFIED1024hypothetical protein Rv0825c [Mycobacterium tuberculosis]14389846771 (2205, 2206)Novel Protein sim. GBank gi|2921304 (AF033496) - herbicide safenerUNCLASSIFIED1021binding protein [Zea mays]143913076513(1409, 1410)Novel Protein sim. GBank gi|2960090|emb|CAA17988.1| - (AL022121)UNCLASSIFIED1022dppA [Mycobacterium tuberculosis]144065486872 (4407, 4408)Novel Protein sim. GBank gi|2960108|emb|CAA18006.1| - (AL022121)UNCLASSIFIED1021hypothetical protein Rv3684 [Mycobacterium tuberculosis]144110858270 (5325, 5326)Novel Protein sim. GBank gi|2960127|emb|CAA18025.1| - (AL022121)UNCLASSIFIED1028hypothetical protein Rv3703c [Mycobacterium tuberculosis]144216495698 (2777, 2778)Novel Protein sim. GBank gi|2961293|emb|CAA12353| - (AJ225023)UNCLASSIFIED1006RagC [Bradyrhizobium japonicum]144327848380 (1733, 1734)Novel Protein sim. GBank gi|2970646 (AF051945) - Xin [Mus musculus]UNCLASSIFIED1003144410284821 (4781, 4782)Novel Protein sim. GBank gi|2970646 (AF051945) - Xin [Mus musculus]UNCLASSIFIED1001144586380205 (6115, 6116)Novel Protein sim. GBank gi|2978255|dbj|BAA25190| - (AB007407)UNCLASSIFIED1050myeloid zinc finger protein-2 [Mus musculus]144680232365 (4711, 4712)Novel Protein sim. GBank gi|2978511 (AF006988) - septin [HomoUNCLASSIFIED1050sapiens]144730783668 (7729, 7730)Novel Protein sim. GBank gi|2981043 (AF051690) - iron-uptake factorUNCLASSIFIED1002[Pseudomonas aeruginosa]144830499026 (885, 886)Novel Protein sim. GBank gi|2981631|dbj|BAA25253.1| - (AB012223)UNCLASSIFIED1006ORF2 [Canis familiaris]144917957450 (8045, 8046)Novel Protein sim. GBank gi|2981631|dbj|BAA25253.1| - (AB012223)UNCLASSIFIED1002ORF2 [Canis familiaris]145020292199 (4327, 4328)Novel Protein sim. GBank gi|2982903 (AE000677) - glycerol-3-phosphateUNCLASSIFIED1031cytidyltransferase [Aquifex aeolicus]145179562520 (2689, 2690)Novel Protein sim. GBank gi|2982968 (AE000681) - RNAUNCLASSIFIED1021methyltransferase (TrmA-family) [Aqulfex aeolicus]145265472169 (4633, 4634)Novel Protein sim. GBank gi|2983901 (AE000744) - putative proteinUNCLASSIFIED1046[Aquifex aeolicus]145325263548 (3419, 3420)Novel Protein sim. GBank gi|2995352|emb|CAA04606.1| - (AJ001206)UNCLASSIFIED1024pep1 [Streptomyces coelicolor]145494238497 (4119, 4120)Novel Protein sim. GBank gi|2995645 (AF051092) - restrictionUNCLASSIFIED1008endonuclease R.Xbal [Xanthomonas campestris]145556511449 (5681, 5682)Novel Protein sim. GBank gi|3002588 (AF030131) - Plenty of SH3s;UNCLASSIFIED1046POSH [Mus musculus]145619882009 (8979, 8980)Novel Protein sim. GBank gi|3024402|sp|P77349|PHOL_ECOLI - PHOH-UNCLASSIFIED1031LIKE PROTEIN145786475949 (6909, 6910)Novel Protein sim. GBank gi|3025003|sp|P75770|YBHN_ECOLI - UNCLASSIFIED1026HYPOTHETICAL 35.9 KD PROTEIN IN MOAE-RHLE INTERGENICREGION145820457025 (1665, 1666)Novel Protein sim. GBank gi|3025051|sp|P75870|YCCS_ECOLI - UNCLASSIFIED1008HYPOTHETICAL 82.0 KD PROTEIN IN SULA-HELD INTERGENICREGION145920456994 (6747, 6748)Novel Protein sim. GBank gi|3025051|sp|P75870|YCCS_ECOLI - UNCLASSIFIED1008HYPOTHETICAL 82.0 KD PROTEIN IN SULA-HELD INTERGENICREGION146011695106 (8933, 8934)Novel Protein sim. GBank gi|3025274|sp|P77751|YPHA_ECOLI - UNCLASSIFIED1004HYPOTHETICAL 17.9 KD PROTEIN IN CSIE-GLYA INTERGENICREGION146180232553 (3517, 3518)Novel Protein sim. GBank gi|3025276|sp|Q02981|YP09_YEAST - UNCLASSIFIED1003, 1004, 1008, 1015,HYPOTHETICAL 62.8 KD PROTEIN IN SSE1-CAR1 INTERGENIC1020, 1026, 1031, 1035,REGION104114625647321 (5109, 5110)Novel Protein sim. GBank gi|3043744|dbj|BAA25536| - (AB011182)UNCLASSIFIED1055KIAA0610 protein [Homo sapiens]146324120704 (8349, 8350)Novel Protein sim. GBank gi|3063449 (AC003981) - F22O13.11UNCLASSIFIED1007[Arabidopsis thaliana]146420416329 (6795, 6796)Novel Protein sim. GBank gi|3080499|emb|CAA18696| - (AL022602)UNCLASSIFIED1003putative long chain fatty acid-coA ligase [Mycobacterium leprae]146580067054 (4755, 4756)Novel Protein sim. GBank gi|311121 (L03536) - PRP18 [SaccharomycesUNCLASSIFIED1002, 1003, 1006, 1007,cerevisiae]1015, 1020, 1024, 1036,1041146627212702 (5063, 5064)Novel Protein sim. GBank gi|3122415|sp|Q55469|MURE_SYNY3 - UDP-NUNCLASSIFIED1007ACETYLMURAMOYLALANYL-D-GLUTAMATE - 2,6-DIAMINOPIMELATELIGASE (UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE)146765494202 (3285, 3286)Novel Protein sim. GBank gi|3122837|sp|O05885|SEA1_MYCTU - UNCLASSIFIED1021, 1051PREPROTEIN TRANSLOCASE SECA 1 SUBUNIT146820446721 (6271, 6272)Novel Protein sim. GBank gi|3122843|sp|O32922|SECA_MYCLE - UNCLASSIFIED1022PREPROTEIN TRANSLOCASE SECA SUBUNIT146982125782 (5445, 5446)Novel Protein sim. GBank gi|3122849|sp|P95759|SECA_STRGR - UNCLASSIFIED1008, 1010, 1014, 1022PREPROTEIN TRANSLOCASE SECA SUBUNIT147080439990 (3093, 3094)Novel Protein sim. GBank gi|3122893|sp|P94985|SYFB_MYCTU - UNCLASSIFIED1015, 1035, 1041PHENYLALANYL-TRNA SYNTHETASEBETA CHAIN (PHENYLALANINE-TRNA LIGASE BETA CHAIN) (PHERS)147139587457 (969, 970)Novel Protein sim. GBank gi|3122932|sp|O32053|TGT_BACSU - UNCLASSIFIED1020QUEUINE TRNA-RIBOSYLTRANSFERASE (TRNA-GUANINETRANSGLYCOSYLASE) (GUANINE INSERTION ENZYME)147219893858 (6581, 6582)Novel Protein sim. GBank gi|3122996|sp|O10685|VGLG_BRSV2 - UNCLASSIFIED1001MAJOR SURFACE GLYCOPROTEIN G (ATTACHMENTGLYCOPROTEIN G)147366259118 (4425, 4426)Novel Protein sim. GBank gi|3127080 (AF061070) - PtxD [PseudomonasUNCLASSIFIED1008stutzeri]147420369568 (8317, 8318)Novel Protein sim. GBank gi|3128359 (AF010496) - ribose transport ATP-UNCLASSIFIED1003binding protein [Rhodobacter capsulatus]147520711026 (7895, 7896)Novel Protein sim. GBank gi|3128364 (AF010496) - potential 30SUNCLASSIFIED1004, 1006ribosomal protein S6 [Rhodobacter capsulatus]147620466820 (503, 504)Novel Protein sim. GBank gi|3157463|dbj|BAA28360| - (D85027) integralUNCLASSIFIED1008membrane protein [Thermus sp. A4]147794143338 (1423, 1424)Novel Protein sim. GBank gi|3170548|gb|AAC34395.1| - (AF056116)UNCLASSIFIED1002unknown [Fugu rubripes]147830166162 (4803, 4804)Novel Protein sim. GBank gi|3170548|gb|AAC34395.1| - (AF056116)UNCLASSIFIED1047unknown [Fugu rubripes]147979105657 (2979, 2980)Novel Protein sim. GBank gi|3183274|sp|O13725|YDO5_SCHPO - UNCLASSIFIED1036HYPOTHETICAL 26.5 KD PROTEIN C15A10.05C IN CHROMOSOME I148021637936 (5685, 5686)Novel Protein sim. GBank gi|3183977|emb|CAA39515| - (X56044) proteinUNCLASSIFIED1031Htf9C [Mus musculus]148113521386 (491, 492)Novel Protein sim. GBank gi|3192726 (AF064539) - gp41 [BacteriophageUNCLASSIFIED1022N15]148237013703 (3735, 3736)Novel Protein sim. GBank gi|3212854 (AC004005) - unknown proteinUNCLASSIFIED1026[Arabidopsis thaliana]148379824579 (3961, 3962)Novel Protein sim. GBank gi|321861|pir||A45313 - putrescine transportUNCLASSIFIED1041protein potF - Escherichia coli148478375747 (3803, 3804)Novel Protein sim. GBank gi|3219913|sp|O14346|YB3G_SCHPO - UNCLASSIFIED1041HYPOTHETICAL PROTEIN C2F12.16 IN CHROMOSOME II148566052048 (5579, 5580)Novel Protein sim. GBank gi|3219995|sp|P37773|MPL_ECOLI - UDP-N-UNCLASSIFIED1031, 1046ACETYLMURAMATE: L-ALANYL-GAMMA-D-GLUTAMYL-MESO-DIAMINOPIMELATE LIGASE148625251251 (2669, 2670)Novel Protein sim. GBank gi|3241940 (AC004625) - unknown proteinUNCLASSIFIED1021[Arabidopsis thaliana]148713069230 (4851, 4852)Novel Protein sim. GBank gi|3242273|emb|CAB07017| - (Z92669)UNCLASSIFIED1022hypothetical protein Rv0236c [Mycobacterium tuberculosis]148879319174 (1081, 1082)Novel Protein sim. GBank gi|3242290|emb|CAA17283| - (AL021922)UNCLASSIFIED1004, 1022cobN [Mycobacterium tuberculosis]148925310369 (279, 280)Novel Protein sim. GBank gi|3253199 (AF029714) - PhaC [PseudomonasUNCLASSIFIED1007putida]149080503659 (7965, 7966)Novel Protein sim. GBank gi|3261502|emb|CAA16010| - (AL021184)UNCLASSIFIED1010hypothetical protein Rv1480 [Mycobacterium tuberculosis]149120466305 (8043, 8044)Novel Protein sim. GBank gi|3261721|emb|CAB07057| - (Z92770)UNCLASSIFIED1008hypothetical protein Rv0153c [Mycobacterium tuberculosis]149281830943 (4045, 4046)Novel Protein sim. GBank gi|3261746|emb|CAB08449| - (Z95207) nusAUNCLASSIFIED1051[Mycobacterium tuberculosis]14938018637 (4631, 4632)Novel Protein sim. GBank gi|3261799|emb|CAB09571| - (Z96796)UNCLASSIFIED1031hypothetical protein Rv0457c [Mycobacterium tuberculosis]149486477555 (2207, 2208)Novel Protein sim. GBank gi|3293539 (AF072709) - unknownUNCLASSIFIED1026[Streptomyces lividans]149510179672 (6245, 6246)Novel Protein sim. GBank gi|3319741|emb|CAA19907| - (AL031035)UNCLASSIFIED1003, 1014hypothetical protein SC6A9.22c [Streptomyces coelicolor]149628828128 (3695, 3696)Novel Protein sim. GBank gi|3327262|dbj|BAA31695| - (AB010827) NhaPUNCLASSIFIED1006[Pseudomonas aeruginosa]149787537695 (4107, 4108)Novel Protein sim. GBank gi|3328190 (AF074266) - proto-oncogene AF4UNCLASSIFIED1002[Mus musculus]149878513148 (3401, 3402)Novel Protein sim. GBank gi|3328774 (AE001308) - PolypeptideUNCLASSIFIED1014Deformylase [Chlamydia trachomatis]149979619697 (6505, 6506)Novel Protein sim. GBank gi|3334801|emb|CAA19949| - (AL031107)UNCLASSIFIED1003putative glucosidase [Streptomyces coelicolor]150080423734 (3315, 3316)Novel Protein sim. GBank gi|3341622|emb|CAA13155| - (AJ231113) z54fUNCLASSIFIED1023[Vibrio cholerae]150111083988 (7457, 7458)Novel Protein sim. GBank gi|3342713 (U22894) - alpha glucosidaseUNCLASSIFIED1022[Streptomyces lividans]150216332226 (155, 156)Novel Protein sim. GBank gi|3367754|emb|CAA20079| - (AL031155)UNCLASSIFIED1001, 1003, 1014hypothetical protein SC3A7.16c [Streptomyces coelicolor]150379554871 (7667, 7668)Novel Protein sim. GBank gi|3367754|emb|CAA20079| - (AL031155)UNCLASSIFIED1001hypothetical protein SC3A7.16c [Streptomyces coelicolor]150480499745 (8901, 8902)Novel Protein sim. GBank gi|3367754|emb|CAA20079| - (AL031155)UNCLASSIFIED1003, 1004, 1010, 1014,hypothetical protein SC3A7.16c [Streptomyces coelicolor]1035, 1041150513022760 (7205, 7206)Novel Protein sim. GBank gi|3378298 (AF079317) - putative plasmidUNCLASSIFIED1022stabilization protein [Sphingomonas aromaticivorans]150666376628 (4491, 4492)Novel Protein sim. GBank gi|3378429 (AF079317) - unknownUNCLASSIFIED1007[Sphingomonas aromaticivorans]150720182451 (6715, 6716)Novel Protein sim. GBank gi|3413827|emb|CAA20295| - (AL031260)UNCLASSIFIED1008putative dihydrodipicolinate synthase [Streptomyces coelicolor]150810109035 (3729, 3730)Novel Protein sim. GBank gi|3414871 (AF071034) - CP4-like integraseUNCLASSIFIED1015[Escherichia coli]150971232053 (7105, 7106)Novel Protein sim. GBank gi|3414930 (AF076599) - FutA [DictyosteliumUNCLASSIFIED1039, 1047, 1051discoideum]151011618046 (4361, 4362)Novel Protein sim. GBank gi|3450883 (AF083334) - fibroin [AntheraeaUNCLASSIFIED1003pernyi]151137021934 (8807, 8808)Novel Protein sim. GBank gi|3482914 (AC003970) - Similar to nodulinsUNCLASSIFIED1023and lipase [Arabidopsis thaliana]151229267664 (129, 130)Novel Protein sim. GBank gi|3493|emb|CAA27836| - (X04288) CDC37UNCLASSIFIED1020gene product [Saccharomyces cerevisiae]151380059321 (3393, 3394)Novel Protein sim. GBank gi|3581849|emb|CAA20805| - (AL031541)UNCLASSIFIED1020, 1022putative phenylalanyl-tRNA synthetase beta chain [Streptomycescoelicolor]151429694999 (5161, 5162)Novel Protein sim. GBank gi|3582220 (AE001272) - conservedUNCLASSIFIED1022hypothetical protein [Lactococcus lactis]151580250065 (1649, 1650)Novel Protein sim. GBank gi|3594|emb|CAA40571| - (X57316)UNCLASSIFIED1004, 1020, 1021carboxypeptidase s [Saccharomyces cerevisiae]151678462176 (5405, 5406)Novel Protein sim. GBank gi|3641340|gb|AAC36351| - (AF090329)UNCLASSIFIED1006cyclohexanone monooxygenase homolog [Pseudomonas fluorescens]151779633561 (1357, 1358)Novel Protein sim. GBank gi|3650031 (AC005396) - putative proline-richUNCLASSIFIED1035cell wall protein [Arabidopsis thaliana]151827974622 (6149, 6150)Novel Protein sim. GBank gi|3721912|dbj|BAA33743.1| - (AB017156) gob-UNCLASSIFIED10035 [Mus musculus]151927974630 (8553, 8554)Novel Protein sim. GBank gi|3721912|dbj|BAA33743.1| - (AB017156) gob-UNCLASSIFIED10035 [Mus musculus]152079255545 (8065, 8066)Novel Protein sim. GBank gi|3811377 (AF100956) - tapasin [MusUNCLASSIFIED1002, 1006, 1007, 1015,musculus]1020, 1024, 1026, 1036,1041152120396091 (6029, 6030)Novel Protein sim. GBank gi|3820539 (AF080002) - UDP-N-UNCLASSIFIED1003acetylmuramyl tripeptide synthetase MurC [Heliobacillus mobilis]152279853458 (7657, 7658)Novel Protein sim. GBank gi|3834293 (U80846) - No definition line foundUNCLASSIFIED1002, 1020, 1022[Caenorhabditis elegans]152320608530 (967, 968)Novel Protein sim. GBank gi|3873399|gb|AAC77475.1| - (U17129)UNCLASSIFIED1003unknown [Rhodococcus erythropolis]152486380142 (2377, 2378)Novel Protein sim. GBank gi|3873920|emb|CAA97776| - (Z73423) cDNAUNCLASSIFIED1050EST EMBL: Z14908 comes from this gene; cDNA EST EMBL: M89403comes from this gene; cDNA EST EMBL: T00022 comes from this gene[Caenorhabditis elegans]152517248601 (7361, 7362)Novel Protein sim. GBank gi|3875362|emb|CAA84696| - (Z35639) similarUNCLASSIFIED1036to TNF-alpha induced Protein B12 [Caenorhabditis elegans]152697993778 (3753, 3754)Novel Protein sim. GBank gi|3877494|emb|CAA88472.1| - (Z48583) ATPUNCLASSIFIED1001, 1006, 1023, 1037binding protein with similarity to the CDC48/PAS1/SEC18 family; cDNAEST EMBL: D65037 comes from this gene; cDNA EST EMBL: D68340comes from this gene; cDNA EST EMBL: D65048 comes from this gene;cDNA EST EMBL: D6845 . . .152735915568 (3477, 3478)Novel Protein sim. GBank gi|3878537|emb|CAB05777| - (Z83236) similarUNCLASSIFIED1021to Sugar (and other) transporters [Caenorhabditis elegans]152856026570 (1303, 1304)Novel Protein sim. GBank gi|3879594|emb|CAA98283| - (Z73976)UNCLASSIFIED1007predicted using Genefinder; similar to reverse transcriptase[Caenorhabditis elegans]152911816374 (1023, 1024)Novel Protein sim. GBank gi|3882285|dbj|BAA34502.1| - (AB018325)UNCLASSIFIED1022, 1031KIAA0782 protein [Homo sapiens]153078984391 (3227, 3228)Novel Protein sim. GBank gi|3886057 (AF106580) - contains similarity toUNCLASSIFIED1014, 1020Drosophila diaphanous (SW: P48608) [Caenorhabditis elegans]153178925900 (4925, 4926)Novel Protein sim. GBank gi|3913032|sp|O30746|ALR2_KLEAE - UNCLASSIFIED1036ALANINE RACEMASE, CATABOLIC153223290639 (5369, 5370)Novel Protein sim. GBank gi|3913652|sp|O09046|FIG1_MOUSE - FIG-1UNCLASSIFIED1015, 1031PROTEIN PRECURSOR153383022629 (7185, 7186)Novel Protein sim. GBank gi|3914095|sp|O14732|MYO2_HUMAN - MYO-UNCLASSIFIED1050INOSITOL-1(OR 4)-MONOPHOSPHATASE 2 (IMP 2) (INOSITOLMONOPHOSPHATASE 2) (MYO-INOSITOL MONOPHOSPHATASE A2)153439523838 (3859, 3860)Novel Protein sim. GBank gi|3915144|sp|O33017|TRMD_MYCLE - (TRNAUNCLASSIFIED1003(GUANINE-N1)-METHYLTRANSFERASE (M1G-METHYLTRANSFERASE) (TRNA [GM37] METHYLTRANSFERASE)153578768459 (7865, 7866)Novel Protein sim. GBank gi|3915170|sp|O69882|TRMD_STRCO - TRNAUNCLASSIFIED1006(GUANINE-N1)-METHYLTRANSFERASE (M1G-METHYLTRANSFERASE) (TRNA [GM37]METHYLTRANSFERASE)153678460574 (7871, 7872)Novel Protein sim. GBank gi|3915557|sp|O05252|YUFN_BACSU - UNCLASSIFIED1024HYPOTHETICAL LIPOPROTEIN YUFN PRECURSOR153730179670 (1885, 1886)Novel Protein sim. GBank gi|3915759|sp|P36044|MNN44_YEAST - MNN4UNCLASSIFIED1020PROTEIN15388370333 (3909, 3910)Novel Protein sim. GBank gi|3925211|emb|CAA21539.1| - (AL032626)UNCLASSIFIED1008cDNA EST EMBL: D70654 comes from this gene; cDNA ESTEMBL: Z14359 comes from this gene; cDNA EST EMBL: D33409 comesfrom this gene; cDNA EST EMBL: D36239 comes from this gene; cDNAEST EMBL: Z14766 comes from this gene; . . .153979201261 (877, 878)Novel Protein sim. GBank gi|3928723|emb|CAA22219| - (AL034355)UNCLASSIFIED1025putative ABC transporter [Streptomyces coelicolor]154030576892 (5709, 5710)Novel Protein sim. GBank gi|3941734 (AF109719) - unknown [MusUNCLASSIFIED1007musculus]154195008332 (6819, 6820)Novel-Protein sim. GBank gi|3947854|emb|CAA22272| - (AL034381)UNCLASSIFIED1015conserved hypothetical PFAM UPF0031 containing protein[Schizosaccharomyces pombe]154279168015 (3223, 3224)Novel Protein sim. GBank gi|3953459 (AC002328) - F20N2.4 [ArabidopsisUNCLASSIFIED1028, 1047thaliana]154365458783 (2617, 2618)Novel Protein sim. GBank gi|3978472 (AF089730) - potassium channelUNCLASSIFIED1051subunit [Rattus norvegicus]154430575467 (5661, 5662)Novel Protein sim. GBank gi|400132|sp|Q02974|KHK_RAT - UNCLASSIFIED1007KETOHEXOKINASE (HEPATIC FRUCTOKINASE)154566727201 (1977, 1978)Novel Protein sim. GBank gi|400729|sp|P31664|PAND_ECOLI - UNCLASSIFIED1046ASPARTATE 1-DECARBOXYLASE PRECURSOR (ASPARTATE ALPHA-DECARBOXYLASE)154695287719 (8551, 8552)Novel Protein sim. GBank gi|4007675|emb|CAA22361| - (AL034443)UNCLASSIFIED1004, 1008, 1010, 1020,putative neuramidase [Streptomyces coelicolor]1022, 1028154723207548 (2235, 2236)Novel Protein sim. GBank gi|4007726|emb|CAA22410| - AL034447)UNCLASSIFIED1006putative methylase [Streptomyces coelicolor]154811103108 (5671, 5672)Novel Protein sim. GBank gi|4007732|emb|CAA22416| - AL034447)UNCLASSIFIED1004formamidopyrimidine-DNA glycosylase [Streptomyces coelicolor]154978778050 (7197, 7198)Novel Protein sim. GBank gi|401087|sp|Q02100|SKO1_YEAST - CRE-UNCLASSIFIED1006, 1024BINDING BZIP PROTEIN SKO1155066442995 (725, 726)Novel Protein sim. GBank gi|401444|sp|P30143|YAAJ_ECOLI - UNCLASSIFIED1020HYPOTHETICAL 51.7 KD PROTEIN IN THRC-TALB INTERGENICREGION (ORF8)155130676397 (8219, 8220)Novel Protein sim. GBank gi|4033718 (U49397) - unknown [StreptococcusUNCLASSIFIED1027pyogenes]155220750985 (2927, 2928)Novel Protein sim. GBank gi|4090263|emb|CAA10518| - (AJ131848)UNCLASSIFIED1020collagen alpha 1 type X [Rattus norvegicus]155352559933 (1293, 1294)Novel Protein sim. GBank gi|4091877 (AF061331) - alpha galactosidaseUNCLASSIFIED1004precursor [Saccharopolyspora erythraea]155479179690 (5149, 5150)Novel Protein sim. GBank gi|4092666 (AF083132) - putative 13.1 kDa E3UNCLASSIFIED1025protein [Porcine adenovirus 3]155578483307 (3045, 3046)Novel Protein sim. GBank gi|4099092 (U83179) - unknown [ArabidopsisUNCLASSIFIED1024thaliana]155680575827 (5763, 5764)Novel Protein sim. GBank gi|4104168 (AF033339) - UNC-45UNCLASSIFIED1004, 1020, 1026, 1055[Caenorhabditis briggsae]155782125017 (3069, 3070)Novel Protein sim. GBank gi|4106620|emb|CAA21375| - (AL031866)UNCLASSIFIED1014, 1020ORF52, len=440 aa, CAT2, highly similar to 4-hydroxybutyrate CoAtransferase, eg. CAT2_CLOKL Clostridium kluyveri, (429 aa), 40.0%identity in 440 aa overlap, Fasta scores: opt: 954, E(): 0 [Yersinia pestis]155857127447 (8261, 8262)Novel Protein sim. GBank gi|4154795 (AE001464) - ATP-DEPENDENTUNCLASSIFIED1031ZINC METALLOPEPTIDASE [Helicobacter pylori J99]155913892897 (6805, 6806)Novel Protein sim. GBank gi|4155073 (AE001485) - putative [HelicobacterUNCLASSIFIED1031pylori J99]156014401486 (3901, 3902)Novel Protein sim. GBank gi|4155568 (AE001527) - putative [HelicobacterUNCLASSIFIED1031pylori J99]156120729681 (8883, 8884)Novel Protein sim. GBank gi|4155917 (AE001554) - putative [HelicobacterUNCLASSIFIED1004pylori J99]156286474057 (3431, 3432)Novel Protein sim. GBank gi|4160292|emb|CAA77084| - (Y18209) alpha-UNCLASSIFIED1051N-acetylglucosaminidase [Nicotiana tabacum]156310126713 (8533, 8534)Novel Protein sim. GBank gi|416162|dbj|BAA03953| - (D16502) ORF2UNCLASSIFIED1014[Saccharomyces cerevisiae]156466471745 (1391, 1392)Novel Protein sim. GBank gi|416592|sp|P32323|AGA1_YEAST-A-UNCLASSIFIED1007AGGLUTININ ATTACHMENT SUBUNIT PRECURSOR156580059698 (3307, 3308)Novel Protein sim. GBank gi|416605|sp|Q00594|ALKK_PSEOL - UNCLASSIFIED1008MEDIUM-CHAIN-FATTY-ACID-COA LIGASE (MEDIUM-CHAIN ACYL-COA SYNTHETASE)156617710385 (7285, 7286)Novel Protein sim. GBank gi|41686|emb|CAA35552| - (X17506) hycGUNCLASSIFIED1041[Escherichia coli]156733205981 (8609, 8610)Novel Protein sim. GBank gi|417170|sp|Q01264|HYUC_PSESN - UNCLASSIFIED1024HYDANTOIN UTILIZATION PROTEIN C (ORF4)156829443014 (3083, 3084)Novel Protein sim. GBank gi|418427|sp|P32634|YEW2_YEAST - UNCLASSIFIED1024HYPOTHETICAL 195.4 KD PROTEIN IN RPS26B-GLC7 INTERGENICREGION156927261550 (4665, 4666)Novel Protein sim. GBank gi|418427|sp|P32634|YEW2_YEAST - UNCLASSIFIED1024HYPOTHETICAL 195.4 KD PROTEIN IN RPS26B-GLC7 INTERGENICREGION157095287711 (8073, 8074)Novel Protein sim. GBank gi|418480|sp|P32139|YIHR_ECOLI - UNCLASSIFIED1002, 1004, 1008, 1010,HYPOTHETICAL 34.0 KD PROTEIN IN GLNA-RBN INTERGENIC1023, 1028, 1036, 1051REGION157179444091 (8665, 8666)Novel Protein sim. GBank gi|4186110|emb|CAA71790| - (Y10831)UNCLASSIFIED1022putative integrase [Ralstonia eutropha]157279621693 (6319, 6320)Novel Protein sim. GBank gi|4186115|emb|CAA71794| - (Y10832) trblUNCLASSIFIED1004[Raistonia eutropha]157316332215 (3487, 3488)Novel Protein sim. GBank gi|4200254|emb|CAA22902| - (AL035300)UNCLASSIFIED1004possible transmembrane protein MLCB1886.05c [Mycobacterium leprae]157411229945 (7095, 7096)Novel Protein sim. GBank gi|420071|pir||A43336 - microtubule-vesicleUNCLASSIFIED1008linker CLIP-170 - human157580026071 (901, 902)Novel Protein sim. GBank gi|4204102 (U10879) - UDP-N-UNCLASSIFIED1003, 1004, 1008, 1021,acetylmuramoylalanine-D-glutamate ligase; MurD; cell wall synthesis1028protein [Streptomyces coelicolor]157637036258 (3189, 3190)Novel Protein sim. GBank gi|4210471|dbj|BAA74535.1| - (AB019033)UNCLASSIFIED1010orfSA [Pseudomonas sp.]157757300817 (5015, 5016)Novel Protein sim. GBank gi|422531|pir||A46170 - tektin A1 - sea urchinUNCLASSIFIED1003, 1004, 1008, 1022,(Strongylocentrotus purpuratus)1031157852563264 (8547, 8548)Novel Protein sim. GBank gi|42405|emb|CAA28642| - (X04968) put. pifAUNCLASSIFIED1025gene product (183AA) [Escherichia coli]157910100744 (6189, 6190)Novel Protein sim. GBank gi|4262236|gb|AAD14529| - (AC006200)UNCLASSIFIED1023putative ribose 5-phosphate isomerase [Arabidopsis thaliana]158087452727 (795, 796)Novel Protein sim. GBank gi|4263790|gb|AAD15450| - (AC006068)UNCLASSIFIED1023putative ch-TOG protein [Arabidopsis thaliana]158111357950 (4245, 4246)Novel Protein sim. GBank gi|4314381|gb|AAD15591| - (AC006232)UNCLASSIFIED1055putative proline-rich protein PRP2 precursor [Arabidopsis thaliana]158279909793 (6125, 6126)Novel Protein sim. GBank gi|4328|emb|CAA47121| - (X66501) RIF1UNCLASSIFIED1004, 1010, 1021[Saccharomyces cerevisiae]158337003901 (4975, 4976)Novel Protein sim. GBank gi|4376841|gb|AAD18690| - (AE001639)UNCLASSIFIED1026Elongation Factor G [Chlamydia pneumoniae]158411813007 (827, 828)Novel Protein sim. GBank gi|4377309|gb|AAD19119| - (AE001678) YigNUNCLASSIFIED1004family hypothetical protein [Chlamydia pneumoniae]15856750668 (5261, 5262)Novel Protein sim. GBank gi|439877 (L27428) - reverse transcriptaseUNCLASSIFIED1020[Homo sapiens]158629145606 (7059, 7060)Novel Protein sim. GBank gi|4454480|gb|AAD20927| - (AC006234)UNCLASSIFIED1015putative (1-4)-beta-mannan endohydrolase [Arabidopsis thaliana]158771797646 (2731, 2732)Novel Protein sim. GBank gi|4455182|emb|CAB36714| - (AL035521)UNCLASSIFIED1031putative protein [Arabidopsis thaliana]158827831761 (6695, 6696)Novel Protein sim. GBank gi|4455367|emb|CAB36777.1| - (AL035524)UNCLASSIFIED1003, 1055putative protein [Arabidopsis thaliana]158920291103 (5615, 5616)Novel Protein sim. GBank gi|4467246|emb|CAB37571| - (AL035569)UNCLASSIFIED1020putative phosphodiesterase [Streptomyces coelicolor]159066047851 (7467, 7468)Novel Protein sim. GBank gi|4494063|emb|CAB39170.1| - (AJ133501)UNCLASSIFIED1051putative type II myosin heavy chain [Physarum polycephalum]159116839582 (6405, 6406)Novel Protein sim. GBank gi|4502419|ref|NP_000704.1|pBLVR - biliverdinUNCLASSIFIED1041reductase B159220297151 (8857, 8858)Novel Protein sim. GBank gi|4512103|gb|AAD21616.1| - (AF117897)UNCLASSIFIED1020rab11 binding protein [Bos taurus]159379918511 (8581, 8582)Novel Protein sim. GBank gi|451544 (U04267) - proline-rich cell wallUNCLASSIFIED1001, 1003protein [Gossypium barbadense]159435007847 (2703, 2704)Novel Protein sim. GBank gi|45365|emb|CAA40908| - (X57736) ORF DUNCLASSIFIED1000[Pseudomonas aeruginosa]159578732473 (5009, 5010)Novel Protein sim. GBank gi|4538948|emb|CAB39684.1| - (AL049483)UNCLASSIFIED1024putative protein [Arabidopsis thaliana]159680217239 (7379, 7380)Novel Protein sim. GBank gi|4539200|emb|CAB39858.1| - (AL049497)UNCLASSIFIED1001, 1003, 1008, 1022,putative long chain fatty acid coA ligase [Streptomyces coelicolor]1041159711091330 (525, 526)Novel Protein sim. GBank gi|4539558|emb|CAB38477.1| - (AL035636)UNCLASSIFIED1004putative DNA polymerase [Streptomyces coelicolor]159878784477 (4151, 4152)Novel Protein sim. GBank gi|4539563|emb|CAB38482.1| - (AL035636)UNCLASSIFIED1006putative transferase [Streptomyces coelicolor]159979254433 (4981, 4982)Novel Protein sim. GBank gi|4586401|dbj|BAA75199.1| - (D88208)UNCLASSIFIED1002, 1006, 1014, 1015,hSgt1p [Homo sapiens]1021, 1035, 1036, 1041,1051160020458788 (3149, 3150)Novel Protein sim. GBank gi|4589285|gb|AAD26430.1|AF13515 -UNCLASSIFIED1008(AF135154) ferric alcaligin siderophore receptor [Bordetella pertussis]160157293972 (2527, 2528)Novel Protein sim. GBank gi|460044 (L29389) - Fun12p [SaccharomycesUNCLASSIFIED1002, 1004, 1006, 1020,cerevisiae]1031, 104116028498693 (3293, 3294)Novel Protein sim. GBank gi|462626|sp|P33749|MSN4_YEAST - ZINCUNCLASSIFIED1031FINGER PROTEIN MSN4 (MULTICOPY SUPPRESSOR OF SNF1PROTEIN 4)160352560914 (3839, 3840)Novel Protein sim. GBank gi|462730|sp|P33209|NOLT_RHIFR -UNCLASSIFIED1010NODULATION PROTEIN NOLT PRECURSOR160421414142 (5385, 5386)Novel Protein sim. GBank gi|462738|sp|P34909|NOT4_YEAST -UNCLASSIFIED1020GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 4160510302287 (8141, 8142)Novel Protein sim. GBank gi|465535|sp|P35196|YBL2_YEAST -UNCLASSIFIED1001HYPOTHETICAL 32.7 KD PROTEIN IN NTH2-COQ1 INTERGENICREGION160694684758 (7521, 7522)Novel Protein sim. GBank gi|465576|sp|P33345|MOLR_ECOLI -UNCLASSIFIED1025MOLYBDATE METABOLISM REGULATOR160713076366 (933, 934)Novel Protein sim. GBank gi|4691395|emb|CAB41562.1| - (AL049727)UNCLASSIFIED1022putative large secreted protein [Streptomyces coelicolor]160886464894 (4203, 4204)Novel Protein sim. GBank gi|4753853|emb|CAB42016.1| - (AL049754)UNCLASSIFIED1001, 1002, 1003, 1004,putative adenylosuccinate synthetase [Streptomyces coelicolor]1008, 1015, 1020, 1023,1025, 1026, 1028, 1031160920403478 (143, 144)Novel Protein sim. GBank gi|4753873|emb|CAB42036.1| - (AL049754)UNCLASSIFIED1003putative fructose 1,6-bisphosphate aldolase [Streptomyces coelicolor]161030239854 (1063, 1064)Novel Protein sim. GBank gi|4758932|ref|NP_004563.1|pPKP2-UNCLASSIFIED1024plakophilin 2161130638163 (8747, 8748)Novel Protein sim. GBank gi|4761453|gb|AAD29365.1|AF11938 -UNCLASSIFIED1020(AF119384) putative CAMP protein [Mus musculus]161280060863 (4877, 4878)Novel Protein sim. GBank gi|4826478|emb|CAB42896.1| - (Z83844)UNCLASSIFIED1015, 1022, 1031similar to SH3-binding protein [Homo sapiens]161328814177 (247, 248)Novel Protein sim. GBank gi|4827044|ref|NP_005112.1|pTRAP - thyroidUNCLASSIFIED1041hormone receptor-associated protein, 240 kDa subunit161427839834 (6659, 6660)Novel Protein sim. GBank gi|4867999|gb|AAD31085.1|AF07816 -UNCLASSIFIED1020, 1031(AF078164) Ku70-binding protein [Homo sapiens]161527975299 (9061, 9062)Novel Protein sim. GBank gi|4884719|gb|AAD31784.1|AF12620 -UNCLASSIFIED1050(AF126201) putative alpha-ketoglutarate dependent dioxygenase AtsK[Pseudomonas putida]16165394598 (563, 564)Novel Protein sim. GBank gi|4885647|ref|NP_005472.1|pTRAP - thyroidUNCLASSIFIED1055hormone receptor-associated protein complex component161778741493 (3553, 3554)Novel Protein sim. GBank gi|4894336|gb|AAD32424.1| - (AF065404)UNCLASSIFIED1020pXO1-120 [Bacillus anthracis]161878404939 (6939, 6940)Novel Protein sim. GBank gi|4928615|gb|AAD33661.1| - (AF134706)UNCLASSIFIED1014, 1022unknown [Sinorhizobium meliloti]161913516879 (3051, 3052)Novel Protein sim. GBank gi|4959396|gb|AAD34331.1|AF11248 -UNCLASSIFIED1022(AF112481) RAD54B protein [Homo sapiens]162057295193 (1507, 1508)Novel Protein sim. GBank gi|496309 (M33957) - vanadate-resistanceUNCLASSIFIED1031(VAN1) [Saccharomyces cerevisiae]162111309303 (619, 620)Novel Protein sim. GBank gi|4966270|gb|AAB52261.2| - (U97002) similarUNCLASSIFIED1008to acyl-CoA dehydrogenases and epoxide hydrolases: Pfam domainPF00441 (Acyl-CoA_dh), Score = 57.4, E-value = 1.7e−16, N = 2; containssimilarity to Pfam domain PF00702 (Hydrolase), Score = 57.4, E-value = 1e−13,N = 1 |C . . .162280084353 (4815, 4816)Novel Protein sim. GBank gi|4980567|gb|AAD35173.1|AE00169 -UNCLASSIFIED1001(AE001694) iron(lll) ABC transporter, permease protein [Thermotogamaritima]162379180453 (4237, 4238)Novel Protein sim. GBank gi|4980870|gb|AAD35454.1|AE00171 -UNCLASSIFIED1028(AE001716) conserved hypothetical protein [Thermotoga maritima]162416316665 (5265, 5266)Novel Protein sim. GBank gi|4981139|gb|AAD35703.1|AE00173 -UNCLASSIFIED1051(AE001736) conserved hypothetical protein [Thermotoga maritima]162510106090 (7237, 7238)Novel Protein sim. GBank gi|4981298|gb|AAD35852.1|AE00174 -UNCLASSIFIED1010(AE001746) conserved hypothetical protein [Thermotoga maritima]162680055391 (7377, 7378)Novel Protein sim. GBank gi|4981328|gb|AAD35881.1|AE00174 -UNCLASSIFIED1001, 1003, 1008, 1019,(AE001747) bioY protein [Thermotoga maritima]1020, 1046162710213168 (395, 396)Novel Protein sim. GBank gi|4981341|gb|AAD35893.1|AE00174 -UNCLASSIFIED1022(AE001748) sugar ABC transporter, permease protein [Thermotogamaritima]162820450967 (6583, 6584)Novel Protein sim. GBank gi|4981925|gb|AAD36435.1|AE00179 -UNCLASSIFIED1022(AE001790) flagellar basal-body rod protein FlgC [Thermotoga maritima]162980017463 (8705, 8706)Novel Protein sim. GBank gi|4982435|gb|AAD36913.1|AE00182 -UNCLASSIFIED1003, 1006, 1020, 1022,(AE001822) alpha-mannosidase, putative [Thermotoga maritima]1025, 1028163079842052 (5905, 5906)Novel Protein sim. GBank gi|4982454|gb|AAD36931.1|AE00182 -UNCLASSIFIED1036, 1041(AE001823) ATP-dependent protease LA, putative [Thermotoga maritima]163195287827 (5137, 5138)Novel Protein sim. GBank gi|4995988|dbj|BAA78221.1| - (AB021506)UNCLASSIFIED1002, 1008, 1010, 1021,25.6% identical to U1 gene of strain U1102 of HHV-6 [Human herpesvirus1022, 1026, 10506]163279574205 (3177, 3178)Novel Protein sim. GBank gi|5019347|emb|CAB44400.1| - (AL078610)UNCLASSIFIED1026, 1028putative oxidoreductase [Streptomyces coelicolor]163320707230 (3955, 3956)Novel Protein sim. GBank gi|5051864|emb|CAB38156.2| - (AL035591)UNCLASSIFIED1004ABC excision nuclease subunit B [Streptomyces coelicolor]163479835127 (1723, 1724)Novel Protein sim. GBank gi|5091486|gb|AAD39559.1| - (AF031417)UNCLASSIFIED1021PcaB-like protein [Pseudomonas putida]163537811466 (5687, 5688)Novel Protein sim. GBank gi|5091610|gb|AAD39599.1|AC00785 -UNCLASSIFIED1055(AC007858) 10A191.15 [Oryza sativa]163652559430 (883, 884)Novel Protein sim. GBank gi|5103027|dbj|BAA78765.1| - (AB023419)UNCLASSIFIED1035, 1055mSox7 [Mus musculus]163779564322 (5967, 5968)Novel Protein sim. GBank gi|5105612|dbj|BAA80925.1| - (AP000062)UNCLASSIFIED1001167 aa long hypothetical protein [Aeropyrum pernix]163835893460 (1173, 1174)Novel Protein sim. GBank gi|5105846|dbj|BAA81158.1| - (AP000063)UNCLASSIFIED1050479 aa long hypothetical protein [Aeropyrum pernix]16399897023 (1065, 1066)Novel Protein sim. GBank gi|5107805|gb|AAD25110.2|AF14055 -UNCLASSIFIED1036(AF140550) ShdA [Salmonella typhimurium]164028841378 (7111, 7112)Novel Protein sim. GBank gi|5123651|emb|CAB45340.1| - (AL079345)UNCLASSIFIED1024putative aminotransferase [Streptomyces coelicolor A3(2)]164127981501 (1549, 1550)Novel Protein sim. GBank gi|5123878|emb|CAB45470.1| - (AL079348)UNCLASSIFIED1004putative Na(+)/H(+) antiporter [Streptomyces coelicolor]164219726577 (6471, 6472)Novel Protein sim. GBank gi|5139534|emb|CAB45535.1| - (AJ243174)UNCLASSIFIED1023hypothetical protein [Pseudomonas fluorescens]164380061959 (1041, 1042)Novel Protein sim. GBank gi|5139695|dbj|BAA81686.1| - (AB029147)UNCLASSIFIED1003, 1004, 1014, 1022,expressed in cucumber hypocotyls [Cucumis sativus]1031, 1035, 1051164417284172 (7559, 7560)Novel Protein sim. GBank gi|5225378|gb|AAD40879.1|AF11313 -UNCLASSIFIED1015(AF113136) IL-1 receptor-associated-kinase-M; IRAK-M [Homo sapiens]164557301554 (6257, 6258)Novel Protein sim. GBank gi|5262605|emb|CAB45743.1| - (AL080150)UNCLASSIFIED1003, 1004hypothetical protein [Homo sapiens]164611070940 (315, 316)Novel Protein sim. GBank gi|5292153|gb|AAD41527.1|L48409_-UNCLASSIFIED1022(L48409) ProQ [Escherichia coli]164727835681 (6793, 6794)Novel Protein sim. GBank gi|532526 (U06630) - Rts1p [SaccharomycesUNCLASSIFIED1004cerevisiae]164820293899 (5215, 5216)Novel Protein sim. GBank gi|5327257|emb|CAA21905.2| - (AL033388)UNCLASSIFIED1031putative histidine biosynthesis bifunctional aml dotransferase[Schizosaccharomyces pombe]164911609242 (3661, 3662)Novel Protein sim. GBank gi|5354196|gb|AAD42405.1|AF15749 -UNCLASSIFIED1003(AF157493) hypothetical protein [Zymomonas mobilis]165037800640 (2139, 2140)Novel Protein sim. GBank gi|5360761|dbj|BAA82150.1| - (AB026288)UNCLASSIFIED1010pharbin [Rattus norvegicus]165179470632 (5609, 5610)Novel Protein sim. GBank gi|5361003|gb|AAD42910.1|U12817_-UNCLASSIFIED1020(U12817) chemotaxis CheV homolog [Vibrio parahaemolyticus]165210841396 (1367, 1368)Novel Protein sim. GBank gi|538258 (L01880) - elongation factor 1-UNCLASSIFIED1006gamma [Saccharomyces cerevisiae]165379483387 (5679, 5680)Novel Protein sim. GBank gi|539177|pir||S37899 - hypothetical proteinUNCLASSIFIED1020YKL074c - yeast (Saccharomyces cerevisiae)165420627828 (7107, 7108)Novel Protein sim. GBank gi|539663|pir||A42701 - PR264/SC35 protein -UNCLASSIFIED1008human165517294928 (819, 820)Novel Protein sim. GBank gi|5410308|gb|AAD43025.1| - (AF100761)UNCLASSIFIED1036PTD017 [Homo sapiens]165610296742 (6289, 6290)Novel Protein sim. GBank gi|541121|pir||S40827 - hypothetical proteinUNCLASSIFIED1002o300 - Escherichia coli165780043491 (1595, 1596)Novel Protein sim. GBank gi|5420387|emb|CAB46679.1| - (AJ243459)UNCLASSIFIED1020proteophosphoglycan [Leishmania major]165820629628 (4225, 4226)Novel Protein sim. GBank gi|5441777|emb|CAB46801.1| - (AL096811)UNCLASSIFIED1003putative transcriptional regulator [Streptomyces coelicolor A3(2)]165978188295 (7953, 7954)Novel Protein sim. GBank gi|5454006|ref|NP_006471.1|pRGS1 - regulatorUNCLASSIFIED1026of G-protein signalling 14166080248670 (4389, 4390)Novel Protein sim. GBank gi|5459240|emb|CAB48913.1| - (AL096837)UNCLASSIFIED1003, 1004, 1015, 1022,hypothetical protein [Streptomyces coelicolor A3(2)]1025, 1026, 1031166166376423 (3561, 3562)Novel Protein sim. GBank gi|5459388|emb|CAB50746.1| - (AL096839)UNCLASSIFIED1003, 1007, 1028putative aminotransferase [Streptomyces coelicolor]166278745654 (8033, 8034)Novel Protein sim. GBank gi|548391|sp|Q06795|NUSG_BACSU -UNCLASSIFIED1006TRANSCRIPTION ANTITERMINATlON PROTEIN NUSG166310355349 (8847, 8848)Novel Protein sim. GBank gi|549456|sp|Q05335|XYS3_PSEPU -UNCLASSIFIED1036XYLDLEGF OPERON TRANSCRIPTIONAL ACTIVATOR 3166477814605 (341, 342)Novel Protein sim. GBank gi|549590|sp|P36555|YJDB_SALTY -UNCLASSIFIED1035HYPOTHETICAL 61.6 KD PROTEIN IN BASS/PMRA-ADIY INTERGENICREGION166529432205 (4149, 4150)Novel Protein sim. GBank gi|549616|sp|P36139|YK26_YEAST -UNCLASSIFIED1006HYPOTHETICAL 31.2 KD PROTEIN IN GAP1-NAP1 INTERGENICREGION166678374963 (5263, 5264)Novel Protein sim. GBank gi|549637|sp|P36159|YK59_YEAST -UNCLASSIFIED1036HYPOTHETICAL 96.8 KD PROTEIN IN SIS2-MTD1 INTERGENICREGION166720604601 (4321, 4322)Novel Protein sim. GBank gi|549646|sp|P36168|YK76_YEAST -UNCLASSIFIED1022HYPOTHETICAL 137.5 KD PROTEIN IN MPL1-PPC1 INTERGENICREGION166856133267 (7615, 7616)Novel Protein sim. GBank gi|549649|sp|P36028|YK83_YEAST -UNCLASSIFIED1020PROBABLE ATP-DEPENDENT PERMEASE YKR103W166979240699 (4305, 4306)Novel Protein sim. GBank gi|549678|sp|P35735|YKF1_YEAST -UNCLASSIFIED1002, 1015, 1041HYPOTHETICAL 40.5 KD PROTEIN IN NUP120-CSE4 INTERGENICREGION167079490688 (2065, 2066)Novel Protein sim. GBank gi|549706|sp|P34253|KT12_YEAST - KTI12UNCLASSIFIED1020PROTEIN16716352896 (4295, 4296)Novel Protein sim. GBank gi|549771|sp|P36115|YKZ9_YEAST -UNCLASSIFIED1055HYPOTHETICAL 68.9 KD PROTEIN IN YPT52-DBP7 INTERGENICREGION167266694898 (4887, 4888)Novel Protein sim. GBank gi|549771|sp|P36115|YKZ9_YEAST -UNCLASSIFIED1006, 1008HYPOTHETICAL 68.9 KD PROTEIN IN YPT52-DBP7 INTERGENICREGION167387453444 (415, 416)Novel Protein sim. GBank gi|551288|emb|CAA83914| - (Z33611)UNCLASSIFIED1023phosphoglycerate mutase [Zea mays]167479856129 (61, 62)Novel Protein sim. GBank gi|5531324|emb|CAB51045.1| - (AJ009579)UNCLASSIFIED1015putative alkane 1-monooxygenase [Pseudomonas fluorescens]167586694741 (6989, 6990)Novel Protein sim. GBank gi|5578850|emb|CAB51252.1| - (AL096872)UNCLASSIFIED1016hypothetical protein [Streptomyces coelicolor A3(2)]167680062341 (5345, 5346)Novel Protein sim. GBank gi|5668604|gb|AAD45975.1|AF11533 -UNCLASSIFIED1008, 1020(AF115334) CmpX [Pseudomonas fluorescens]167720435478 (8607, 8608)Novel Protein sim. GBank gi|5678923|gb|AAD46809.1|AF15764 -UNCLASSIFIED1022(AF157643) RecD [Mycobacterium smegmatis]167837812478 (2515, 2516)Novel Protein sim. GBank gi|5689421|dbj|BAA82994.1| - (AB028965)UNCLASSIFIED1055KIAA1042 protein [Homo sapiens]167930660264 (8427, 8428)Novel Protein sim. GBank gi|5689551|dbj|BAA83059.1| - (AB029030)UNCLASSIFIED1024KIAA1107 protein [Homo sapiens]168037056406 (2095, 2096)Novel Protein sim. GBank gi|5689883|emb|CAB52046.1| - (AL109732)UNCLASSIFIED1047hypothetical protein [Streptomyces coelicolor A3(2)]168147656370 (5993, 5994)Novel Protein sim. GBank gi|5689917|emb|CAB51955.1| - (AL109661)UNCLASSIFIED1026putative oxidoreductase [Streptomyces coelicolor A3(2)]168278916212 (3339, 3340)Novel Protein sim. GBank gi|5689948|emb|CAB51985.1| - (AL109663)UNCLASSIFIED1036putative isoleucyl-tRNA synthetase [Streptomyces coelicolor A3(2)]168327975125 (7145, 7146)Novel Protein sim. GBank gi|5689958|emb|CAB51995.1| - (AL109663)UNCLASSIFIED1004putative UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomycescoelicolor A3(2)]168470336412 (8417, 8418)Novel Protein sim. GBank gi|5702013|emb|CAB52245.1| - (AJ007904)UNCLASSIFIED1007splicing factor pTSR1 [Trypanosoma brucel]168521415074 (175, 176)Novel Protein sim. GBank gi|585159|sp|P37476|FTSH_BACSU - CELLUNCLASSIFIED1020DIVISION PROTEIN FTSH HOMOLOG168671772271 (749, 750)Novel Protein sim. GBank gi|586301|sp|P38288|YB12_YEAST -UNCLASSIFIED1007HYPOTHETICAL 48.0 KD PROTEIN IN CDC28-ARL1 INTERGENICREGION PRECURSOR16879544749 (305, 306)Novel Protein sim. GBank gi|586348|sp|P38326|YB81_YEAST -UNCLASSIFIED1004HYPOTHETICAL 34.3 KD PROTEIN IN PCS60-ABD1 INTERGENICREGION168880497095 (5495, 5496)Novel Protein sim. GBank gi|586407|sp|P38206|RFT1_YEAST -UNCLASSIFIED1001, 1002, 1003, 1004,NUCLEAR DIVISION RFT1 PROTEIN1006, 1007, 1008, 1010,1015, 1020, 1022, 1023,1024, 1025, 1028, 1031,1035, 1036, 1041168916464675 (3807, 3808)Novel Protein sim. GBank gi|586477|sp|P38219|YBN5_YEAST -UNCLASSIFIED1041HYPOTHETICAL 44.2 KD GTP-BINDING PROTEIN IN SCO2-MRF1INTERGENIC REGION169017941407 (5833, 5834)Novel Protein sim. GBank gi|586732|sp|P37688|YIBN_ECOLI -UNCLASSIFIED1036HYPOTHETICAL 15.6 KD PROTEIN IN SECB-TDH INTERGENICREGION169180059688 (1715, 1716)Novel Protein sim. GBank gi|586814|sp|P37484|YYBT_BACSU -UNCLASSIFIED1004, 1022, 1031HYPOTHETICAL 74.3 KD PROTEIN IN RPLI-COTF INTERGENICREGION169221657669 (4703, 4704)Novel Protein sim. GBank gi|625182 (L39015) - mitochondrial glutamyl-UNCLASSIFIED1003, 1020tRNA synthetase [Saccharomyces cerevisiae]169378801027 (8773, 8774)Novel Protein sim. GBank gi|628660|pir||S37755 - Adenylyl-transferase -UNCLASSIFIED1015Escherichia coli169437036146 (2163, 2164)Novel Protein sim. GBank gi|633648|emb|CAA58712| - (X83754) alpha-UNCLASSIFIED1010COP [Saccharomyces cerevisiae]169525148919 (4157, 4158)Novel Protein sim. GBank gi|709805|gb|AAC95474.1| - (U21300)UNCLASSIFIED1024transposase [Corynebacterium striatum]169620403499 (4331, 4332)Novel Protein sim. GBank gi|709805|gb|AAC95474.1| - (U21300)UNCLASSIFIED1003transposase [Corynebacterium striatum]169710302823 (7989, 7990)Novel Protein sim. GBank gi|71562|pir||LRRTA1 - clathrin light chain A1 -UNCLASSIFIED1036rat (fragment)169870203092 (1767, 1768)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUUNCLASSIFIED1021SUBFAMILY J WARNING ENTRY !!!!169979561090 (2537, 2538)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUUNCLASSIFIED1035SUBFAMILY J WARNING ENTRY !!!!170087120473 (2611, 2612)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUUNCLASSIFIED1023SUBFAMILY J WARNING ENTRY !!!!170186467285 (3137, 3138)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUUNCLASSIFIED1026SUBFAMILY J WARNING ENTRY !!!!170287120109 (5131, 5132)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUUNCLASSIFIED1016SUBFAMILY J WARNING ENTRY !!!!170311770037 (5481, 5482)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUUNCLASSIFIED1028SUBFAMILY J WARNING ENTRY !!!!170477723765 (7443, 7444)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUUNCLASSIFIED1035SUBFAMILY J WARNING ENTRY !!!!170565497572 (8227, 8228)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUUNCLASSIFIED1014SUBFAMILY J WARNING ENTRY !!!!170677560017 (2625, 2626)Novel Protein sim. GBank gi|728832|sp|P39189|ALU2_HUMAN - !!!! ALUUNCLASSIFIED1051SUBFAMILY SB WARNING ENTRY !!!!170735056752 (5635, 5636)Novel Protein sim. GBank gi|728832|sp|P39189|ALU2_HUMAN - !!!! ALUUNCLASSIFIED1000SUBFAMILY SB WARNING ENTRY !!!!170877809799 (309, 310)Novel Protein sim. GBank gi|728837|sp|P39194|ALU7_HUMAN - !!!! ALUUNCLASSIFIED1048SUBFAMILY SQ WARNING ENTRY !!!!170978259870 (859, 860)Novel Protein sim. GBank gi|728837|sp|P39194|ALU7_HUMAN - !!!! ALUUNCLASSIFIED1024SUBFAMILY SQ WARNING ENTRY !!!!171078483811 (1927, 1928)Novel Protein sim. GBank gi|728837|sp|P39194|ALU7_HUMAN - !!!! ALUUNCLASSIFIED1024SUBFAMILY SQ WARNING ENTRY !!!!171186477767 (4707, 4708)Novel Protein sim. GBank gi|728850|sp|P08640|AMYH_YEAST -UNCLASSIFIED1017GLUCOAMYLASE S1/S2 PRECURSOR (GLUCAN 1,4-ALPHA-GLUCOSIDASE) (1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE)171279184203 (3903, 3904)Novel Protein sim. GBank gi|728867|sp|P40602|APG_ARATH - ANTER-UNCLASSIFIED1025SPECIFIC PROLINE-RICH PROTEIN APG PRECURSOR171379841889 (4103, 4104)Novel Protein sim. GBank gi|728868|sp|P40603|APG_BRANA - ANTER-UNCLASSIFIED1001, 1023, 1041SPECIFIC PROLINE-RICH PROTEIN APG (PROTEIN CEX)171417903925 (5907, 5908)Novel Protein sim. GBank gi|729400|sp|P39677|EFG2_YEAST -UNCLASSIFIED1006ELONGATION FACTOR G, MITOCHONDRIAL 2 PRECURSOR (MEF-G-2)171527829695 (5231, 5232)Novel Protein sim. GBank gi|729633|sp|Q05562|GRPE_STRCO - GRPEUNCLASSIFIED1020PROTEIN171611668373 (7949, 7950)Novel Protein sim. GBank gi|731172|sp|P17437|XP2_XENLA - SKINUNCLASSIFIED1022SECRETORY PROTEIN XP2 PRECURSOR (APEG PROTEIN)171716844901 (1383, 1384)Novel Protein sim. GBank gi|731409|sp|P39992|YEC3_YEAST -UNCLASSIFIED1021HYPOTHETICAL 78.3 KD PROTEIN IN RIP1-URA3 INTERGENICREGION171871793792 (2339, 2340)Novel Protein sim. GBank gi|731433|sp|P40007|YEJ2_YEAST -UNCLASSIFIED1006, 1007HYPOTHETICAL 26.9 KD PROTEIN IN MNN1-PM140 INTERGENICREGION171911695753 (2793, 2794)Novel Protein sim. GBank gi|731445|sp|P40017|YEL4_YEAST -UNCLASSIFIED1031HYPOTHETICAL 103.3 KD PROTEIN IN PRO3-GCD11 INTERGENICREGION17208489149 (1727, 1728)Novel Protein sim. GBank gi|731483|sp|P40053|YER0_YEAST -UNCLASSIFIED1022HYPOTHETICAL 72.4 KD PROTEIN IN PTP3-ILV1 INTERGENICREGION172120482342 (7967, 7968)Novel Protein sim. GBank gi|731485|sp|P40055|YER2_YEAST -UNCLASSIFIED1008HYPOTHETICAL 62.3 KD PROTEIN IN PTP3-ILV1 INTERGENICREGION172225234447 (4059, 4060)Novel Protein sim. GBank gi|731504|sp|P40071|YEU3_YEAST -UNCLASSIFIED1041HYPOTHETICAL 81.5 KD PROTEIN IN USS1-BEB1 INTERGENICREGION172327850401 (5077, 5078)Novel Protein sim. GBank gi|731505|sp|P40072|YEU6_YEAST -UNCLASSIFIED1020HYPOTHETICAL 30.8 KD PROTEIN IN SPR6-RPL17B INTERGENICREGION17249402873 (581, 582)Novel Protein sim. GBank gi|731586|sp|Q02998|YH19_RHOCA -UNCLASSIFIED1002HYPOTHETICAL 104.1 KD PROTEIN IN HYPE 3′REGION (ORF19)172579608399 (3767, 3768)Novel Protein sim. GBank gi|731676|sp|P38796|YHN5_YEAST -UNCLASSIFIED1004HYPOTHETICAL 44.9 KD PROTEIN IN ERG7-NMD2 INTERGENICREGION172630649562 (4735, 4736)Novel Protein sim. GBank gi|731678|sp|P38799|YHN8_YEAST -UNCLASSIFIED1020HYPOTHETICAL 63.3 KD PROTEIN IN NMD2-IRE1 INTERGENICREGION172780503463 (8265, 8266)Novel Protein sim. GBank gi|731707|sp|P38827|SET1_YEAST - SET1UNCLASSIFIED1002, 1006, 1010, 1020,PROTEIN1022, 1025, 1031172820698592 (8489, 8490)Novel Protein sim. GBank gi|731709|Sp|P38829|YHS2_YEAST -UNCLASSIFIED1031HYPOTHETICAL 25.7 KD PROTEIN IN MSH1-EPT1 INTERGENICREGION172979621559 (5987, 5988)Novel Protein sim. GBank gi|731745|sp|P38865|YHX5_YEAST -UNCLASSIFIED1004HYPOTHETICAL 21.7 KD PROTEIN IN ENO2-STB5 INTERGENICREGION173021437268 (8237, 8238)Novel Protein sim. GBank gi|731813|sp|P40523|YIF5_YEAST -UNCLASSIFIED1020, 1031HYPOTHETICAL 70.7 KD PROTEIN IN SNP1-GPP1 INTERGENICREGION173180079877 (989, 990)Novel Protein sim. GBank gi|731907|sp|P40564|YIS4_YEAST -UNCLASSIFIED1031HYPOTHETICAL 48.6 KD PROTEIN IN BET1-PAN1 INTERGENICREGION173279601791 (1975, 1976)Novel Protein sim. GBank gi|731958|sp|P39543|YJT2_YEAST -UNCLASSIFIED1001, 1007HYPOTHETICAL 26.6 KD PROTEIN IN CDC6-CRY2 INTERGENICREGION PRECURSOR173394677403 (6417, 6418)Novel Protein sim. GBank gi|731958|sp|P39543|YJT2_YEAST -UNCLASSIFIED1004HYPOTHETICAL 26.6 KD PROTEIN IN CDC6-CRY2 INTERGENICREGION PRECURSOR173479234237 (7923, 7924)Novel Protein sim. GBank gi|732010|sp|P39288|YJES_ECOLI -UNCLASSIFIED1015HYPOTHETICAL 43.1 KD PROTEIN IN PSD-AMIB INTERGENICREGION (F379)17358219373 (4189, 4190)Novel Protein sim. GBank gi|732085|sp|P39377|IADA_ECOLI -UNCLASSIFIED1031ISOASPARTYL DIPEPTIDASE173680047417 (6961, 6962)Novel Protein sim. GBank gi|732099|sp|P39391|YJIT_ECOLI -UNCLASSIFIED1008, 1015HYPOTHETICAL 58.6 KD PROTEIN IN IADA-MCRD INTERGENICREGION173710167845 (6693, 6694)Novel Protein sim. GBank gi|732122|sp|P39411|YJJX_ECOLI -UNCLASSIFIED1002HYPOTHETICAL 18.6 KD PROTEIN IN TRPR-GPMB INTERGENICREGION (F173)173880428548 (5929, 5930)Novel Protein sim. GBank gi|732198|sp|P40168|YNT5_YEAST -UNCLASSIFIED1003, 1004, 1006, 1007,HYPOTHETICAL 26.5 KD PROTEIN IN WHI3-CHS1 INTERGENIC1008, 1010, 1015, 1020,REGION1021, 1022, 1023, 1025,1028, 1031, 1036, 1041173995010059 (2715, 2716)Novel Protein sim. GBank gi|732362|sp|P39616|DHA2_BACSU -UNCLASSIFIED1006PROBABLE ALDEHYDE DEHYDROGENASE YWDH174056152651 (2215, 2216)Novel Protein sim. GBank gi|80728|pir||S18942 - hypothetical proteinUNCLASSIFIED1024, 1026(whiB 3′ region) - Streptomyces coelicolor174127372182 (4367, 4368)Novel Protein sim. GBank gi|808852 (J03477) - unknown proteinUNCLASSIFIED1007[Saccharomyces cerevisiae]174227981046 (579, 580)Novel Protein sim. GBank gi|81286|pir||S22697 - extensin - Volvox carteriUNCLASSIFIED1004(fragment)174379182256 (2649, 2650)Novel Protein sim. GBank gi|81286|pir||S22697 - extensin - Volvox carteriUNCLASSIFIED1028, 1036(fragment)174417710350 (1997, 1998)Novel Protein sim. GBank gi|83589|pir||B22671 - TyB protein - yeastUNCLASSIFIED1015(Saccharomyces cerevisiae) transposon Ty912174580255924 (691, 692)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1008, 1022[Human herpesvirus 6]17468491831 (837, 838)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1031[Human herpesvirus 6]174720589867 (3597, 3598)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1050[Human herpesvirus 6]174878471213 (4047, 4048)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1041[Human herpesvirus 6]174911614741 (4519, 4520)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1022[Human herpesvirus 6]175079581891 (7327, 7328)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1022[Human herpesvirus 6]175178677674 (1953, 1954)Novel Protein sim. GBank gi|870810 (L43074) - ORF5 [StreptomycesUNCLASSIFIED1006[glaucescens]175211110490 (1075, 1076)Novel Protein sim. GBank gi|871531|emb|CAA61199| - (X87947)UNCLASSIFIED1020glycosyltransferase [Saccharomyces cerevisiae]175311686962 (1949, 1950)Novel Protein sim. GBank gi|882477 (U28377) - ORF_o211 [EscherichiaUNCLASSIFIED1028coli]175478386617 (7421, 7422)Novel Protein sim. GBank gi|91205|pir||E29149 - proline-rich protein -UNCLASSIFIED1024mouse175595412852 (7175, 7176)Novel Protein sim. GBank gi|924943 (U29539) - ORFB [Mus musculus]UNCLASSIFIED1001, 1003, 1008, 1020,1022, 1040, 1041175613504589 (8929, 8930)Novel Protein sim. GBank gi|95100|pir||S21334 - hypothetical protein 4 -UNCLASSIFIED1001Agrobacterium tumefaciens175757129414 (5259, 5260)Novel Protein sim. GBank gi|961450|dbJ|BAA09929| - (D63879) KIAA0156UNCLASSIFIED1031gene product is related to Xenopus nucleolin. [Homo sapiens]175879216186 (5981, 5982)Novel Protein sim. GBank gi|96198|pir||JC1108 - Na+/H+-exchangingUNCLASSIFIED1022protein nhaB - Escherichia coli17593375663 (1511, 1512)Novel Protein sim. GBank gi|2094851|emb|CAA72162| - (Y11304)Contains protein domainUNCLASSIFIED1010ferredoxin [Rhodobacter capsulatus](PF00111) - 2Fe-2S iron-sulfurcluster binding domains176039403334 (481, 482)Novel Protein sim. GBank gi|730917|sp|P39076|TCPB_YEAST - T-Contains protein domainUNCLASSIFIED1004, 1020, 1022, 1041COMPLEX PROTEIN 1, BETA SUBUNIT (TCP-1-BETA) (CCT-BETA)(PF00118) - TCP-1/cpn60chaperonin family17619940240 (3221, 3222)Novel Protein sim. GBank gi|3581868|emb|CAA20824| - (AL031541)Contains protein domainUNCLASSIFIED1015putative glutamine synthetase [Streptomyces coelicolor](PF00120) - Glutaminesynthetase176211688146 (3229, 3230)Novel Protein sim. GBank gi|2894386|emb|CAA74996| - (Y14683) Bpu101Contains protein domainUNCLASSIFIED1004(5m)cytosine-specific DNA modification methyltransferase (C1) [Bacillus(PF00145) - C-5 cytosine-specificpumilus]DNA methylase176378673297 (6737, 6738)Novel Protein sim. GBank gi|731628|sp|P38702|YHG2_YEAST -Contains protein domainUNCLASSIFIED1024PUTATIVE MITOCHONDRIAL CARRIER YHR002W(PF00153) - Mitochondrial carrierproteins176479247936 (941, 942)Novel Protein sim. GBank gi|2662573 (AF036693) - Similar to UDP-Contains protein domainUNCLASSIFIED1022glucuronosyltransferase [Caenorhabditis elegans](PF00201) - UDP-glucoronosyland UDP-glucosyl transferases176580022725 (239, 240)Novel Protein sim. GBank gi|171523 (J02802) - fumaraseContains protein domainUNCLASSIFIED1003[Saccharomyces cerevisiae](PF00206) - Lyase176620288092 (1139, 1140)Novel Protein sim. GBank gi|416644|sp|P11447|ARLY_ECOLI -Contains protein domainUNCLASSIFIED1031ARGININOSUCCINATE LYASE (ARGINOSUCCINASE) (ASAL)(PF00206) - Lyase176779915187(345, 346)Novel Protein sim. GBank gi|4704562|gb|AAD28162.1|AF10227 -Contains protein domainUNCLASSIFIED1001(AF102270) fumarase C [Pseudomonas putida](PF00206) - Lyase176816754986 (2841, 2842)Novel Protein sim. GBank gi|298750|bbs|127942 - photosystem|reactionContains protein domainUNCLASSIFIED1041center protein psaA product [Sorghum bicolor, Qiuji No. 5, Peptide(PF00223) - Photosystem|psaAChloroplast, 750 aa]and psaB proteins176942940912 (7619, 7620)Conlains protein domainUNCLASSIFIED1034(PF00238) - Ribosomal proteinL14177079260305 (1443, 1444)Novel Protein sim. GBank gi|543793|sp|P36953|AFAM_RAT - AFAMINContains protein domainUNCLASSIFIED1002PRECURSOR (ALPHA-ALBUMIN) (ALPHA-ALB)(PF00273) - Serum albumin family177179242014 (551, 552)Novel Protein sim. GBank gi|2326743|emb|CAB10957| - (Z98268)Contains protein domainUNCLASSIFIED1007, 1021hypothetical protein Rv1700 [Mycobacterium tuberculosis](PF00293) - Bacterial mutTprotein177266143987 (8011, 8012)Novel Protein sim. GBank gi|1706734|sp|P19911|F16P_ALCEU -Contains protein domainUNCLASSIFIED1008FRUCTOSE-1,6-BISPHOSPHATASE, CHROMOSOMAL (D-FRUCTOSE-(PF00316) - Fructose-1-6-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE) (FBPASE)bisphosphatase177320295089 (5037, 5038)Novel Protein sim. GBank gi|2495410|sp|P55740|SLYA_ECOLI -Contains protein domainUNCLASSIFIED1031TRANSCRIPTIONAL REGULATOR SLYA(PF00325) - Bacterial regulatoryproteins, crp family177411773671 (3785, 3786)Novel Protein sim. GBank gi|1017706 (U17901) - PLAP [RattusContains protein domainUNCLASSIFIED1020norvegicus](PF00400) - WD domain, G-betarepeat177578979108 (6567, 6568)Contains protein domainUNCLASSIFIED1041, 1051(PF00439) - Bromodomain177620626695 (4261, 4262)Novel Protein sim. GBank gi|3261533|emb|CAA17469| - (AL021943)Contains protein domainUNCLASSIFIED1003fadE8 [Mycobacterium tuberculosis](PF00441) - Acyl-CoAdehydrogenase177720292744 (7133, 7134)Novel Protein sim. GBank gi|1174884|sp|P44391|URE1_HAEIN -Contains protein domainUNCLASSIFIED1031UREASE ALPHA SUBUNIT (UREA AMIDOHYDROLASE)(PF00449) - Urease177810195690 (2707, 2708)Novel Protein sim. GBank gi|1174887|sp|P42873|URE1_STAXY -Contains protein domainUNCLASSIFIED1002UREASE ALPHA SUBUNIT (UREA AMIDOHYDROLASE)(PF00449) - Urease177910867085 (4883, 4884)Novel Protein sim. GBank gi|2708800 (AF035751) - urease alpha subunitContains protein domainUNCLASSIFIED1004[Synechococcus PCC7002]PF00449) - Urease178079834132 (1019, 1020)Novel Protein sim. GBank gi|4204900 (U57100) - unknown [BrucellaContains protein domainUNCLASSIFIED1006abortus](PF00455) - Bacterial regulatoryproteins, deoR family178111349599(6173, 6174)Novel Protein sim. GBank gi|312667|emb|CAA48166| - (X68025)Contains protein domainUNCLASSIFIED1031transketolase [Escherichia coli](PF00456) - Transketolase178228002779 (2717, 2718)Novel Protein sim. GBank gi|2564237|emb|CAA71199.1| - (Y10112)Contains protein domainUNCLASSIFIED1002omega-6 desaturase [Gossypium hirsutum](PF00487) - Fatty acid desaturase178311669560(4897, 4898)Contains protein domainUNCLASSIFIED1022(PF00490) - Delta-aminolevulinicacid dehydratase178420261727 (6205, 6206)Novel Protein sim. GBank gi|2950464|emb|CAA17814| - (AL022071)Contains protein domainUNCLASSIFIED1004hypothetical protein [Schizosaccharomyces pombe](PF00514) - Armadillo/beta-catenin-like repeats178520293306 (2141, 2142)Novel Protein sim. GBank gi|2104303|emb|CAB08632| - (Z95387)Contains protein domainUNCLASSIFIED1031hypothetical protein Rv2610c [Mycobacterium tuberculosis](PF00534) - Glycosyl transferasesgroup 1178679582340 (7679, 7680)Novel Protein sim. GBank gi|2983961 (AE000748) - succinyl-CoA ligaseContains protein domainUNCLASSIFIED1020beta subunit [Aquifex aeolicus](PF00549) - CoA-ligases178727929188 (7705, 7706)Novel Protein sim. GBank gi|3288113|emb|CAB09803| - (Z97067)Contains protein domainUNCLASSIFIED1002, 1004, 1020, 1022,elongation factor 1-beta [Beta vulgaris](PF00736) - EF-1 guanine1050nucleotide exchange domain178810870719 (1037, 1038)Novel Protein sim. GBank gi|2507075|sp|P15302|NAGD_ECOLI - NAGDContains protein domainUNCLASSIFIED1004PROTEIN(PF00807) - Apldaecin178919871965 (8067, 8068)Contains protein domainUNCLASSIFIED1031(PF00818) - Ice nucleation proteinrepeat179066442693 (7359, 7360)Novel Protein sim. GBank gi|1653153|dbj|BAA18069| - (D90911) acriflavinContains protein domainUNCLASSIFIED1020, 1036resistance protein [Synechocystis sp.](PF00873) - AcrB/AcrD/AcrFfamily179179209027 (6515, 6516)Novel Protein sim. GBank gi|1653901|dbj|BAA18811| - (D90917)Contains protein domainUNCLASSIFIED1001, 1008acriflavine resistance protein [Synechocystis sp.](PF00873) - AcrB/AcrD/AcrFfamily179285800164 (1463, 1464)Novel Protein sim. GBank gi|2501534|sp|P75802|YLIG_ECOLI -Contains protein domainUNCLASSIFIED1023HYPOTHETICAL 49.6 KD PROTEIN IN MOEA-DACC INTERGENIC(PF00919) - UncharacterizedREGIONprotein family UPF0004179313519117 (2381, 2382)Novel Protein sim. GBank gi|2995295|emb|CAA18324| - (AL022268)Contains protein domainUNCLASSIFIED1022hypothetical protein SC4H2.08 [Streptomyces coelicolor](PF00919) - Uncharacterizedprotein family UPF0004179479652522 (3871, 3872)Novel Protein sim. GBank gi|3294240|emb|CAA19853| - (AL031031)Contains protein domainUNCLASSIFIED1008, 1024, 1028hypothetical protein SC7C7.07 [Streptomyces coelicolor](PF00919) - Uncharacterizedprotein family UPF0004179521421629 (7513, 7514)Novel Protein sim. GBank gi|418514|sp|P32669|TALC_ECOLI -Contains protein domainUNCLASSIFIED1020TRANSALDOLASE-LIKE PROTEIN TALC(PF00923) - Transaldolase179680236478 (7609, 7610)Novel Protein sim. GBank gi|120626|sp|P25337|G10_YEAST - G10Contains protein domainUNCLASSIFIED1003, 1004, 1006, 1015,PROTEIN HOMOLOG(PF01125) - G10 protein1020, 1022, 1031, 1036179780581279 (4827, 4828)Novel Protein sim. GBank gi|400619|sp|P14306|DKA1_YEAST - DKA1Contains protein domainUNCLASSIFIED1002, 1006, 1008,1015,PROTEIN (NSP1 PROTEIN) (TFS1 PROTEIN)(PF01161) -1020, 1022, 1028, 1051,phosphatldylethanolamine-1055binding protein179878522096 (2529, 2530)Novel Protein sim. GBank gi|1175964|sp|P43544|YFG0_YEAST -Contains protein domainUNCLASSIFIED1000, 1006,1007HYPOTHETICAL 25.1 KD PROTEIN IN THI5 5′REGION(PF01174) - uncharacterizedprotein family UPF0030179914998905 (5889, 5890)Novel Protein sim. GBank gi|2137494|pir||S66498 - M-sema F proteinContains protein domainUNCLASSIFIED1022precusor - mouse(PF01403) - Sema domain180079633420 (5751, 5752)Novel Protein sim. GBank gi|1351621|sp|Q09860|YAF6_SCHPO -Contains protein domainUNCLASSIFIED1021, 1036PUTATIVE CYSTEINYL-TRNA SYNTHETASE C29E6.06C (CYSTEINE-(PF01406) - tRNA synthetasesTRNA LIGASE) (CYSRS)class I (C)180120435633 (2577, 2578)Novel Protein sim. GBank gi|146345 (K02844) - phenylalanyl-tRNAContains protein domainUNCLASSIFIED1022synthetase alpha-subunit [Escherichia coli](PF01409) - tRNA synthetasesclass II (F)18027432090 (5995, 5996)Novel Protein sim. GBank gi|1730713|sp|P53971|YNC3_YEAST -Contains protein domainUNCLASSIFIED1055HYPOTHETICAL 108.5 KD PROTEIN IN UME3-PUB1 INTERGENIC(PF01422) - Zinc fingerREGION180325139015 (6993, 6994)Novel Protein sim. GBank gi|4982025|gb|AAD36528.1|AE00179 -Contains protein domainUNCLASSIFIED1024(AE001797) jag protein, putative [Thermotoga maritima](PF01424) - R3H domain180478786559 (6967, 6968)Novel Protein sim. GBank gi|1351433|sp|P47737|X194_ECOLI - XContains protein domainUNCLASSIFIED1006POLYPEPTIDE (ORF 19) (P19 PROTEIN) (ORF169)(PF01464) - TransglycosylaseSLT domain180570287383 (1917, 1918)Novel Protein sim. GBank gi|136131|sp|P06694|TRA3_ECOLI -contains protein domainUNCLASSIFIED1007TRANSPOSASE FOR TRANSPOSON TN21(PF01526) - Transposase180680234027 (1735, 1736)Novel Protein sim. GBank gi|227157|prf||1615302A - Zn/Cd resistanceContains protein domainUNCLASSIFIED1020, 1022gene [Saccharomyces cerevisiae](PF01545) - Cation efflux family180780209420 (233, 234)Novel Protein sim. GBank gi|2494141|sp|P56064|PRIM_HELPY - DNAContains protein domainUNCLASSIFIED1031PRIMASE(PF01751) - Toprim domain180836848042 (4401, 4402)Novel Protein sim. GBank gi|435743|bbs|139151 - (S66567) alpha-atrialContains protein domainUNCLASSIFIED1050natriuretic factor/coat protein, alpha-ANF/coat protein = fusion(PF01819) - Levivirus coat proteinpolypeptide(coat protein, alpha-atrial natriuretic factor, alpha-ANF)[human, bacteriophage fr, expression vector pFAN15, PeptidePlasmidSynthetic . . .180921426822 (5517, 5518)Novel Protein sim. GBank gi|95567|pir||S21562 - hypothetical protein B -Contains protein domainUNCLASSIFIED1020Erwinia amylovora(PF01836) - Transposase181080054040 (4009, 4010)Novel Protein sim. GBank gi|1001236|dbj|BAA10477| - (D64003)UNCLASSIFIED1001, 1003, 1015, 1026,hypothetical protein [Synechocystis sp.]1031, 1050181179163120 (8915, 8916)Novel Protein sim. GBank gi|1001304|dbj|BAA10791| - (D64006)UNCLASSIFIED1028hypothetical protein [Synechocystis sp.]181227981021 (4579, 4580)Novel Protein sim. GBank gi|101245|pir||S15038 - cell division controlUNCLASSIFIED1004protein CDC15 - yeast (Saccharomyces cerevisiae)181312851296 (7091, 7092)Novel Protein sim. GBank gi|1055177 (U40060) - weakly similar to E.UNCLASSIFIED1028nidulans bimA gene product (SP: P17885) [Caenorhabditis elegans]181478785447 (4111, 4112)Novel Protein sim. GBank gi|1074957|pir||164084 - lactoferrin bindingUNCLASSIFIED1006, 1020protein (lbpA) homolog - Haemophilus lnfluenzae (strain Rd KW20)181578676883 (2253, 2254)Novel Protein sim. GBank gi|1077325|pir||S50966 - probable membraneUNCLASSIFIED1007protein YLL054c - yeast (Saccharomyces cerevisiae)181630149873 (3987, 3988)Novel Protein sim. GBank gi|1077333|pir||S51473 - probable membraneUNCLASSIFIED1003, 1015, 1020, 1023,protein YLR386w - yeast (Saccharomyces cerevisiae)1025, 1031, 1036181730455430 (2125, 2126)Novel Protein sim. GBank gi|1077367|pir||S51457 - probable membraneUNCLASSIFIED1006protein YLR238w - yeast (Saccharomyces cerevisiae)181810205983 (895, 896)Novel Protein sim. GBank gi|1077411|pir||S51434 - hypothetical proteinUNCLASSIFIED1004YLR189c - yeast (Saccharomyces cerevisiae)181980219715 (2101, 2102)Novel Protein sim. GBank gi|1077576|pir||S52683 - probable membraneUNCLASSIFIED1003, 1004, 1014, 1020,protein YDR118w - yeast (Saccharomyces cerevisiae)1022, 1031182039547823 (7469, 7470)Novel Protein sim. GBank gi|1084649|pir||S55965 - probable membraneUNCLASSIFIED1004, 1036protein YLR409c - yeast (Saccharomyces cerevisiae)182179251709 (1645, 1646)Novel Protein sim. GBank gi|1109849 (U41538) - proline richUNCLASSIFIED1022[Caenorhabditis elegans]182280440066 (301, 302)Novel Protein sim. GBank gi|1110587|bbs|170532 - (S79410) nuclearUNCLASSIFIED1008, 1031, 1035localization signals (NLS)-binding protein = spot-1 [mice, Balb/c, testes,Peptide, 140 aa] [Mus sp.]182320702777 (7387, 7388)Novel Protein sim. GBank gi|111817|pir||S18426 - hypothetical protein 4 -UNCLASSIFIED1004rat182478159669 (2761, 2762)Novel Protein sim. GBank gi|112205|pir||B39066 - proline-rich protein 15 -UNCLASSIFIED1050rat182510173861 (6687, 6688)Novel Protein sim. GBank gi|113618|sp|P19537|ALF_CORGL -UNCLASSIFIED1003FRUCTOSE-BISPHOSPHATE ALDOLASE182678835806 (7143, 7144)Novel Protein sim. GBank gi|113618|sp|P19537|ALF_CORGL -UNCLASSIFIED1006, 1020, 1024FRUCTOSE-BISPHOSPHATE ALDOLASE182717927323 (3569, 3570)Novel Protein sim. GBank gi|1136426|dbj|BAA11500| - (D80005)UNCLASSIFIED1035, 1041KIAA0183 [Homo sapiens]182830245237 (5493, 5494)Novel Protein sim. GBank gi|113671|sp|P23964|ALUF_HUMAN - !!!! ALUUNCLASSIFIED1041CLASS F WARNING ENTRY !!!!182979250012 (6861, 6862)Novel Protein sim. GBank gi|114699|sp|P18496|ATPY_YEAST - ATP10UNCLASSIFIED1023PROTEIN183078786528 (1291, 1292)Novel Protein sim. GBank gi|114908|sp|P28657|BE16_MOUSE - BRAINUNCLASSIFIED1020PROTEIN E16118318499644 (2497, 2498)Novel Protein sim. GBank gi|1167959 (U43409) - cathelin relatedUNCLASSIFIED1003, 1022antimicrobial peptide [Mus musculus]183278388041 (2571, 2572)Novel Protein sim. GBank gi|1169483|sp|P43897|EFTS_HUMAN -UNCLASSIFIED1007MITOCHONDRIAL ELONGATION FACTOR TS PRECURSOR (EF-TS)(EF-TSMT)18337509905 (5725, 5726)Novel Protein sim. GBank gi|1169782|sp|P45432|FUS6_ARATH - FUSCAUNCLASSIFIED1055PROTEIN FUS6183480187797 (3427, 3428)Novel Protein sim. GBank gi|1170950|sp|P43638|MHP1_YEAST - MAP-UNCLASSIFIED1055HOMOLOGOUS PROTEIN 1183594140105 (3211, 3212)Novel Protein sim. GBank gi|1171085|sp|P44958|MVIN_HAEIN -UNCLASSIFIED1008VIRULENCE FACTOR MVIN HOMOLOG183634408496 (1175, 1176)Novel Protein sim. GBank gi|1172508|sp|P43502|PILI_PSEAE - PILIUNCLASSIFIED1027PROTEIN183738602558 (3867, 3868)Novel Protein sim. GBank gi|1172573|sp|P43923|PPCK_HAEIN -UNCLASSIFIED1022PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)183839507802 (4515, 4516)Novel Protein sim. GBank gi|1174426|sp|P41833|SPO8_YEAST -UNCLASSIFIED1031TRANSCRIPTIONAL REGULATOR SPO8183917962587 (3535, 3536)Novel Protein sim. GBank gi|1174508|sp|P43820|SYFB_HAEIN -UNCLASSIFIED1021PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN(PHENYLALANINE-TRNA LIGASE BETA CHAIN)(PHERS)18409875260 (1611, 1612)Novel Protein sim. GBank gi|1174661|sp|P44594|TGT_HAEIN -UNCLASSIFIED1041QUEUINE TRNA-RIBOSYLTRANSFERASE (TRNA-GUANINETRANSGLYCOSYLASE) (GUANINE INSERTION ENZYME)184129224577 (5639, 5640)Novel Protein sim. GBank gi|1174933|sp|P44907|VACB_HAEIN - VACBUNCLASSIFIED1027PROTEIN HOMOLOG184211293241 (3207, 3208)Novel Protein sim. GBank gi|1175916|sp|P43583|YFA7_YEAST -UNCLASSIFIED1003HYPOTHETICAL 207.6 KD PROTEIN IN SMC1-SEC4 INTERGENICREGION184394123912 (2693, 2694)Novel Protein sim. GBank gi|1175935|sp|P43570|YFC7_YEAST -UNCLASSIFIED1001, 1002, 1003, 1004,HYPOTHETICAL 57.6 KD PROTEIN IN CAK1-STE2 INTERGENIC1006, 1007, 1008, 1010,REGION1014, 1015, 1020, 1021,1022, 1023, 1025, 1026,1028, 1031, 1035, 1036,1041, 1046, 1051184428351735 (8819, 8820)Novel Protein sim. GBank gi|1175942|sp|P43563|MOB2_YEAST - MOB2UNCLASSIFIED1004, 1006, 1035PROTEIN (MPS1 BINDER 2)184578681486 (5407, 5408)Novel Protein sim. GBank gi|1176023|sp|P43618|YFL6_YEAST -UNCLASSIFIED1006HYPOTHETICAL 41.3 KD PROTEIN IN SAP155-YMR31 INTERGENICREGION184680497259 (891, 892)Novel Protein sim. GBank gi|1176192|sp|P45420|YHCD_ECOLI -UNCLASSIFIED1010HYPOTHETICAL OUTER MEMBRANE USHER PROTEIN IN GLTF-NANT INTERGENIC REGION PRECURSOR184779632494 (8133, 8134)Novel Protein sim. GBank gi|1176241|sp|P45524|YHET_ECOLI -UNCLASSIFIED1035HYPOTHETICAL 38.5 KD PROTEIN IN KIFB-PRKB INTERGENICREGION18489858912 (6535, 6536)Novel Protein sim. GBank gi|1176338|sp|P40355|YJ31_YEAST -UNCLASSIFIED1021HYPOTHETICAL 108.4 KD PROTEIN IN CBF1-NTA1 INTERGENICREGION184978795674 (1969, 1970)Novel Protein sim. GBank gi|1176586|sp|P42842|YN53_YEAST -UNCLASSIFIED1007HYPOTHETICAL 102.3 KD PROTEIN IN DAL82-RFA2 INTERGENICREGION185078767526 (7827, 7828)Novel Protein sim. GBank gi|1176587|sp|P42843|YN51_YEAST -UNCLASSIFIED1006HYPOTHETICAL 88.9 KD PROTEIN IN RFA2-STB1 INTERGENICREGION185171841899 (8051, 8052)Novel Protein sim. GBank gi|1176587|sp|P42843|YN51_YEAST -UNCLASSIFIED1020, 1041HYPOTHETICAL 88.9 KD PROTEIN IN RFA2-STB1 INTERGENICREGION185280218016 (7011, 7012)Novel Protein sim. GBank gi|1176588|sp|P42844|YN50_YEAST -UNCLASSIFIED1003, 1004, 1006, 1010,HYPOTHETICAL 23.5 KD PROTEIN IN RFA2-STB1 INTERGENIC1020, 1021, 1022, 1031,REGION1035, 1036185366770458 (5433, 5434)Novel Protein sim. GBank gi|1181176 (L25828) - HrcU [ErwiniaUNCLASSIFIED1046amylovora]185479190469 (8031, 8032)Novel Protein sim. GBank gi|118376|sp|P21169|DCOR_ECOLI -UNCLASSIFIED1022ORNITHINE DECARBOXYLASE, CONSTITUTIVE185530655196 (1261, 1262)Novel Protein sim. GBank gi|1203832 (U46003) - beta-D-glucanUNCLASSIFIED1020exohydrolase, lsoenzyme Exoll [Hordeum vulgare]185613515110 (157, 158)Novel Protein sim. GBank gi|1208456|dbj|BAA10624| - (D64004)UNCLASSIFIED1022hypothetical protein [Synechocystis sp.]185733202438 (2705, 2706)Novel Protein sim. GBank gi|1213585|dbj|BAA07613| - (D38633)UNCLASSIFIED1024regulatory protein bphR [Pseudomonas sp.]185879815089 (6269, 6270)Novel Protein sim. GBank gi|1215732 (U48718) - OphB [AgrobacteriumUNCLASSIFIED1015tumefaciens]185987898900 (1201, 1202)Novel Protein sim. GBank gi|1230578 (U47057) - orf2 [Vibrio choleraeUNCLASSIFIED1013O139]186025266043 (145, 146)Novel Protein sim. GBank gi|123528|sp|P14586|HRP3_PLAFS -UNCLASSIFIED1051HISTIDINE-RICH PROTEIN186111088357 (4101, 4102)Novel Protein sim. GBank gi|123530|sp|P04929|HRPX_PLALO -UNCLASSIFIED1020HISTIDINE-RICH GLYCOPROTEIN PRECURSOR186227354200 (4195, 4196)Novel Protein sim. GBank gi|123530|sp|P04929|HRPX_PLALO -UNCLASSIFIED1024HISTIDINE-RICH GLYCOPROTEIN PRECURSOR186379453762 (6577, 6578)Novel Protein sim. GBank gi|123530|sp|P04929|HRPX_PLALO -UNCLASSIFIED1014HISTIDINE-RICH GLYCOPROTEIN PRECURSOR186411617285 (7797, 7798)Novel Protein sim. GBank gi|123530|sp|P04929|HRPX_PLALO -UNCLASSIFIED1022HISTIDINE-RICH GLYCOPROTEIN PRECURSOR186571095614 (5737, 5738)Novel Protein sim. GBank gi|1256134|dbj|BAA19501| - (AB002150) YbbEUNCLASSIFIED1026, 1050[Bacillus subtilis]186678674975 (6473, 6474)Novel Protein sim. GBank gi|126296|sp|P08548|LIN1_NYCCO - LINE-1UNCLASSIFIED1024REVERSE TRANSCRIPTASE HOMOLOG186771810492 (6457, 6458)Novel Protein sim. GBank gi|126690|sp|P22134|MAG_YEAST - DNA-3-UNCLASSIFIED1006METHYLADENINE GLYCOSIDASE (3-METHYLADENINE DNAGLYCOSYLASE) (3MEA DNA GLYCOSYLASE)186895292792 (1365, 1366)Novel Protein sim. GBank gi|126822|sp|P24279|MCM3_YEAST -UNCLASSIFIED1020MINICHROMOSOME MAINTENANCE PROTEIN 3186929247836 (1893, 1894)Novel Protein sim. GBank gi|127360|sp|P08593|MS18_YEAST - MSS18UNCLASSIFIED1002, 1020PROTEIN187080475239 (3185, 3186)Novel Protein sim. GBank gi|128399|sp|P14743|NMT_YEAST -UNCLASSIFIED1003, 1004, 1008, 1010,GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE (PEPTIDE N-1015, 1020, 1022, 1023,MYRISTOYLTRANSFERASE) (MYRISTOYL-COA: PROTEIN N-1041MYRISTOYLTRANSFERASE) (NMT)18716512354 (1493, 1494)Novel Protein sim. GBank gi|130201|sp|P15083|PIGR_RAT -UNCLASSIFIED1020POLYMERIC-IMMUNOGLOBULIN RECEPTOR PRECURSOR (PLGR)[CONTAINS: SECRETORY COMPONENT]187217696021 (1253, 1254)Novel Protein sim. GBank gi|1314576 (U51197) - unknownUNCLASSIFIED1041[Sphingomonas S88].187327842091 (6015, 6016)Novel Protein sim. GBank gi|1335205|emb|CAA36480| - (X52235) ORFIIUNCLASSIFIED1004[Homo sapiens]187420474314 (5691, 5692)Novel Protein sim. GBank gi|134253|sp|P13458|SBCC_ECOLI -UNCLASSIFIED1022EXONUCLEASE SBCC18758487312 (1807, 1808)Novel Protein sim. GBank gi|1345705|sp|P11433|CC24_YEAST - CELLUNCLASSIFIED1020DIVISION CONTROL PROTEIN 24 (CALCIUM REGULATORY PROTEIN)187686671073 (87, 88)Novel Protein sim. GBank gi|134920|sp|P21997|SSGP_VOLCA -UNCLASSIFIED1002, 1045SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185)187779763364 (7595, 7596)Novel Protein sim. GBank gi|134920|sp|P21997|SSGP_VOLCA -UNCLASSIFIED1021SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185)18787643007 (7099, 7100)Novel Protein sim. GBank gi|1351184|sp|P48527|SYYM_YEAST -UNCLASSIFIED1031TYROSYL-TRNA SYNTHETASE, MITOCHONDRIAL PRECURSOR(TYROSINE-TRNA LIGASE) (TYRRS)187979872166 (3571, 3572)Novel Protein sim. GBank gi|135135|sp|P13030|SYK1_ECOLI - LYSYL-UNCLASSIFIED1002TRNA SYNTHETASE (LYSINE-TRNA LIGASE) (LYSRS)188011272604 (6829, 6830)Novel Protein sim. GBank gi|135160|sp|P25345|SYNM_YEAST -UNCLASSIFIED1008ASPARAGINYL-TRNA SYNTHETASE, MITOCHONDRIAL PRECURSOR(ASPARAGINE-TRNA LIGASE) (ASNRS)188123308867 (1233, 1234)Novel Protein sim. GBank gi|1351819|sp|P48234|YG3J_YEAST -UNCLASSIFIED1050HYPOTHETICAL 81.7 KD PROTEIN IN MOL1-NAT2 INTERGENICREGION188280434029 (2795, 2796)Novel Protein sim. GBank gi|1351822|sp|P48237|YG3M_YEAST -UNCLASSIFIED1004, 1006, 1010, 1022,HYPOTHETICAL 101.4 KD PROTEIN IN RPL30B-RSR1 INTERGENIC1023, 1028, 1031, 1035REGION188317297596 (2595, 2596)Novel Protein sim. GBank gi|1351898|sp|P48840|AGAB_VIBS7 - BETA-UNCLASSIFIED1002AGARASE B188488097238 (351, 352)Novel Protein sim. GBank gi|1352400|sp|P45632|EXOC_AZOBR -UNCLASSIFIED1016PHOSPHOMANNOMUTASE (PMM)188578898882 (1729, 1730)Novel Protein sim. GBank gi|1352614|sp|P11466|OCTC_RAT -UNCLASSIFIED1015PEROXISOMAL CARNITINE OCTANOYLTRANSFERASE (COT)188639415921 (8671, 8672)Novel Protein sim. GBank gi|1352891|sp|P47124|HOC1_YEAST -UNCLASSIFIED1022PUTATIVE GLYCOSYLTRANSFERASE HOC1 PRECURSOR188730637606 (5811, 5812)Novel Protein sim. GBank gi|1352893|sp|P47127|YJ51_YEAST -UNCLASSIFIED1024HYPOTHETICAL 44.4 KD PROTEIN IN MIR1-STE18 INTERGENICREGION188827977408 (601, 602)Novel Protein sim. GBank gi|1352922|sp|47158|YJ92_YEAST -UNCLASSIFIED1020HYPOTHETICAL 57.1 KD PROTEIN IN ATP2-RPS5 INTERGENICREGION188911238455 (5177, 5178)Novel Protein sim. GBank gi|1352922|sp|P47158|YJ92_YEAST -UNCLASSIFIED1031HYPOTHETICAL 57.1 KD PROTEIN IN ATP2-RPS5 INTERGENICREGION189011613241 (5307, 5308)Novel Protein sim. GBank gi|1352922|sp|P47158|YJ92_YEAST -UNCLASSIFIED1004HYPOTHETICAL 57.1 KD PROTEIN IN ATP2-RPS5 INTERGENICREGION189130789199 (689, 690)Novel Protein sim. GBank gi|1353007|sp|P47019|YJM2_YEAST -UNCLASSIFIED1002, 1020HYPOTHETICAL 19.3 KD PROTEIN IN GCD14-POS18 INTERGENICREGION189278911349 (391, 392)Novel Protein sim. GBank gi|1353047|sp|P47083|YJX2_YEAST -UNCLASSIFIED1015HYPOTHETICAL 67.0 KD PROTEIN IN PRE3-SAG1 INTERGENICREGION18938500628 (2429, 2430)Novel Protein sim. GBank gi|1353101|sp|P48558|YN45_YEAST -UNCLASSIFIED1031HYPOTHETICAL 33.6 KD PROTEIN IN MCK1-RP55B INTERGENICREGION189427829902 (5829, 5830)Novel Protein sim. GBank gi|1353105|sp|P48563|YN37_YEAST -UNCLASSIFIED1003, 1004, 1020, 1022,HYPOTHETICAL 186.8 KD PROTEIN IN CLA4-MID1 INTERGENIC1031REGION189510101181 (9017, 9018)Novel Protein sim. GBank gi|1360960|pir||B38965 - hypothetical protein BUNCLASSIFIED1035(insertion sequence IS1222) - Enterobacter agglomerans189625139813 (8835, 8836)Novel Protein sim. GBank gi|1361235|pir||S55904 - phosphotransferaseUNCLASSIFIED1024system enzyme II, galactitol specific, protein B - Escherichia coli (strainEC3132)189778772612 (1105, 1106)Novel Protein sim. GBank gi|1363732|pir||S59413 - probable membraneUNCLASSIFIED1006protein YLR454w - yeast (Saccharomyces cerevisiae)189878673951 (4589, 4590)Novel Protein sim. GBank gi|1363741|pir||S59392 - probable membraneUNCLASSIFIED1024protein YLR246w - yeast (Saccharomyces cerevisiae)189925323155 (4999, 5000)Novel Protein sim. GBank gi|1363750|pir||S59384 - hypothetical proteinUNCLASSIFIED1015YLR419w - yeast (Saccharomyces cerevisiae)190027968519 (7035, 7036)Novel Protein sim. GBank gi|1363755|pir||S59376 - hypothetical proteinUNCLASSIFIED1004YLR410w - yeast (Saccharomyces cerevisiae)190180233464 (5759, 5760)Novel Protein sim. GBank gi|136482|sp|P16649|TUP1_YEAST -UNCLASSIFIED1006, 1008, 1015, 1022,GLUCOSE REPRESSION REGULATORY PROTEIN TUP11031(FLOCCULATION SUPPRESSOR PROTEIN) (REPRESSOR AER2)190213084252 (8457, 8458)Novel Protein sim. GBank gi|136586|sp|P09095|TYCA_BACBR -UNCLASSIFIED1022TYROCIDINE SYNTHETASE I (PHENYLALANINE RACEMASE [ATP-HYDROLYZING]190320457637 (4377, 4378)Novel Protein sim. GBank gi|137026|sp|P22494|UMUC_SALTY - UMUCUNCLASSIFIED1008PROTEIN190478761131 (3899, 3900)Novel Protein sim. GBank gi|1375487 (U43076) - cdc37 homolog [MusUNCLASSIFIED1015, 1020, 1041musculus]190579970020 (4249, 4250)Novel Protein sim. GBank gi|138595|sp|P02845|VIT2_CHICK -UNCLASSIFIED1031VITELLOGENIN II PRECURSOR (MAJOR VITELLOGENIN) [CONTAINS:LIPOVITELLIN I (LVI); PHOSVITIN (PV); LIPOVITELLIN II (LVII); YGP40]190678679746 (4021, 4022)Novel Protein sim. GBank gi|139990|sp|P03740|Y194_LAMBD -UNCLASSIFIED1006HYPOTHETICAL PROTEIN ORF194190730624144 (2175, 2176)Novel Protein sim. GBank gi|140464|sp|P25618|YCQ7_YEAST -UNCLASSIFIED1007HYPOTHETICAL 107.9 KD PROTEIN IN POL4-SRD1 INTERGENICREGION19088372269 (4345, 4346)Novel Protein sim. GBank gi|140618|sp|P07027|UVRY_ECOLI - UVRYUNCLASSIFIED1008PROTEIN190986694722 (3143, 3144)Novel Protein sim. GBank gi|141347|sp|P21320|YR7F_ECOLI -UNCLASSIFIED1001, 1002, 1003, 1004,HYPOTHETICAL 11.9 KD PROTEIN (ORFF) (RETRON EC67)1008, 1020, 1021, 1022,1031, 1036, 1041, 1051,1055191078784624 (8961, 8962)Novel Protein sim. GBank gi|141470|sp|P19658|EX70_YEAST - 70 KDUNCLASSIFIED1041EXOCYST COMPLEX PROTEIN191127827987 (131, 132)Novel Protein sim. GBank gi|1469199|dbj|BAA09487| - (D50928) TheUNCLASSIFIED1004KIAA0138 gene product is novel. [Homo sapiens]191286696050 (9057, 9058)Novel Protein sim. GBank gi|1480863 (U63332) - super cysteine richUNCLASSIFIED1022, 1041protein; SCRP [Homo sapiens]191311072211 (2727, 2728)Novel Protein sim. GBank gi|152957 (L05004) - 5-enolpyruvylshikimate-3-UNCLASSIFIED1031phosphate synthase [Staphylococcus aureus]191466396403 (1793, 1794)Novel Protein sim. GBank gi|1542932|emb|CAB02171| - (Z80108)UNCLASSIFIED1006hypothetical protein Rv1423 [Mycobacterium tuberculosis]191537799096 (6339, 6340)Novel Protein sim. GBank gi|1550705|emb|CAB02362| - (Z80225)UNCLASSIFIED1010hypothetical protein Rv2664 [Mycobacterium tuberculosis]191678511548 (5695, 5696)Novel Protein sim. GBank gi|1644232|dbj|BAA11082| - (D67066) N-UNCLASSIFIED1051WASP [Bos taurus]191727826557 (2747, 2748)Novel Protein sim. GBank gi|1651839|dbj|BAA16766| - (D90900)UNCLASSIFIED1031hypothetical protein [Synechocystis sp.]191879822071 (5027, 5028)Novel Protein sim. GBank gi|1651938|dbj|BAA16864| - (D90901) hemeUNCLASSIFIED1031oxygenase [Synechocystis sp.]191932444862 (7065, 7066)Novel Protein sim. GBank gi|1652989|dbj|BAA17906| - (D90910)UNCLASSIFIED1026hypothetical protein [Synechocystis sp.]192032733909 (6827, 6828)Novel Protein sim. GBank gi|1653019|dbj|BAA17936| - (D90910)UNCLASSIFIED1001cob(I)alamin adenosyltransferase [Synechocystis sp.]192111085697 (5813, 5814)Novel Protein sim. GBank gi|1653584|dbj|BAA18497| - (D90914)UNCLASSIFIED1003hypothetical protein [Synechocystis sp.]192212986753 (8733, 8734)Novel Protein sim. GBank gi|1655665|emb|CAB03731| - (Z81368)UNCLASSIFIED1028hypothetical protein Rv2395 [Mycobacterium tuberculosis]192377530490 (371, 372)Novel Protein sim. GBank gi|1655699|emb|CAA69032| - (Y07752)UNCLASSIFIED1035pherophorin-S [Volvox certeri]192411088690 (985, 986)Novel Protein sim. GBank gi|1655699|emb|CAA69032| - (Y07752)UNCLASSIFIED1020pherophorin-S [Volvox carteri]192547660230 (5965, 5966)Novel Protein sim. GBank gi|1655699|emb|CAA69032| - (Y07752)UNCLASSIFIED1026pherophorin-S [Volvox carteri]192679240598 (8711, 8712)Novel Protein sim. GBank gi|1657619 (U72504) - G5p [ArabidopsisUNCLASSIFIED1021thaliana]192765987546 (93, 94)Novel Protein sim. GBank gi|168237 (M76546) - hydroxyproline-richUNCLASSIFIED1051protein [Hellanthus annuus]192865691817 (2331, 2332)Novel Protein sim. GBank gi|1703594 (U80439) - coded for by C. elegansUNCLASSIFIED1007cDNA yk7c8.5; coded for by C. elegans cDNA yk133b3.5; coded for by C.elegans cDNA yk65a4.5; coded for by C. elegans cDNA yk7c8.3; codedfor by C. elegans cDNA CEESQ66F; coded for by C. elegans cDNAyk65a4.3; . . .192980486551 (5199, 5200)Novel Protein sim. GBank gi|1709032|sp|P53035|MIG2_YEAST -UNCLASSIFIED1002, 1003, 1008, 1010,REGULATORY PROTEIN MIG21020, 1021, 1022, 1031193079444559 (685, 686)Novel Protein sim. GBank gi|1709346|sp|P53617|NRD1_YEAST - NRD1UNCLASSIFIED1020PROTEIN193178763956 (7585, 7586)Novel Protein sim. GBank gi|1709399|sp|P52891|NU84_YEAST -UNCLASSIFIED1024, 1041NUCLEOPORIN NUP84 (NUCLEAR PORE PROTEIN NUP84)193280017553 (5653, 5654)Novel Protein sim. GBank gi|171124 (M20319) - aminotriazole resistanceUNCLASSIFIED1004, 1024, 1035protein [Saccharomyces cerevisiae]193330420964 (5957, 5958)Novel Protein sim. GBank gi|172012 (M12087) - thr-tRNA-synthetaseUNCLASSIFIED1020[Saccharomyces cerevisiae]193430658077 (5791, 5792)Novel Protein sim. GBank gi|172076 (M88605) - contains Cys-4 zinc-UNCLASSIFIED1024finger, resembles erythroid transcription factor GATA-1; ORF[Saccharomyces cerevisiae]193585801318 (1265, 1266)Novel Protein sim. GBank gi|1722914|sp|Q10388|Y007_MYCTU -UNCLASSIFIED1023HYPOTHETICAL 61.0 KD PROTEIN CY190.07193665690391 (65, 66)Novel Protein sim. GBank gi|1722975|sp|Q10636|Y039_MYCTU -UNCLASSIFIED1024, 1046HYPOTHETICAL 32.2 KD PROTEIN CY130.09 PRECURSOR193780497297 (8589, 8590)Novel Protein sim. GBank gi|1723025|sp|P53525|Y05L_MYCLE -UNCLASSIFIED1010HYPOTHETICAL 71.2 KD PROTEIN O659193839563096 (7269, 7270)Novel Protein sim. GBank gi|1723077|sp|Q11042|Y084_MYCTU -UNCLASSIFIED1004HYPOTHETICAL 93.4 KD PROTEIN CY50.04C193955631457 (4337, 4338)Novel Protein sim. GBank gi|1723116|sp|P50876|Y161_HUMAN -UNCLASSIFIED1000HYPOTHETICAL PROTEIN KIAA0161194057304297 (3335, 3336)Novel Protein sim. GBank gi|1723643|sp|P53204|YG15_YEAST -UNCLASSIFIED1004, 1020, 1024HYPOTHETICAL 44.9 KD PROTEIN IN SEC9-MSB2 INTERGENICREGION194180503293 (3905, 3906)Novel Protein sim. GBank gi|1723643|sp|P53204|YG15_YEAST -UNCLASSIFIED1004, 1010, 1041HYPOTHETICAL 44.9 KD PROTEIN IN SEC9-MSB2 INTERGENICREGION194280237581 (8897, 8898)Novel Protein sim. GBank gi|1723697|sp|P53265|YG2W_YEAST -UNCLASSIFIED1003, 1004, 1008, 1020,HYPOTHETICAL 46.7 KD PROTEIN IN CLB6-SPT6 INTERGENIC1022, 1023, 1031REGION194394992097 (2883, 2884)Novel Protein sim. GBank gi|1723717|sp|P53285|YG3H_YEAST -UNCLASSIFIED1001, 1006, 1015, 1020,HYPOTHETICAL 54.5 KD PROTEIN IN CBF2-SKN1 INTERGENIC1031REGION194480238850 (6945, 6946)Novel Protein sim. GBank gi|1723717|sp|P53285|YG3H_YEAST -UNCLASSIFIED1006, 1008, 1020, 1031,HYPOTHETICAL 54.5 KD PROTEIN IN CBF2-SKN1 INTERGENIC1036REGION194529353579 (7435, 7436)Novel Protein sim. GBank gi|1723731|sp|P53298|YG43_YEAST -UNCLASSIFIED1006, 1020HYPOTHETICAL 47.3 KD PROTEIN IN ATF2-RNR4 INTERGENICREGION194679556773 (3349, 3350)Novel Protein sim. GBank gi|1723765|sp|P53317|YG5C_YEAST -UNCLASSIFIED1035HYPOTHETICAL 22.3 KD PROTEIN IN MGA1-GCN4 INTERGENICREGION194730653753 (5373, 5374)Novel Protein sim. GBank gi|1723766|sp|P53318|COQ6_YEAST -UNCLASSIFIED1020UBIQUINONE BIOSYNTHESIS MONOOXGENASE COQ6194878796556 (4163, 4164)Novel Protein sim. GBank gi|1723795|sp|P53197|YGA3_YEAST -UNCLASSIFIED1020HYPOTHETICAL 62.8 KD TRP-ASP REPEATS CONTAINING PROTEININ PMC1-TFG2 INTERGENIC REGION194980470228 (4329, 4330)Novel Protein sim. GBank gi|1723806|sp|P53192|YGC0_YEAST -UNCLASSIFIED1002, 1004, 1006, 1007,HYPOTHETICAL 27.1 KD PROTEIN IN ALK1-CKB1 INTERGENIC1008, 1010, 1015, 1020,REGION1021, 1022, 1023, 1024,1025, 1028, 1031,1035,1036, 1041195087912640 (575, 576)Novel Protein sim. GBank gi|1723879|sp|P53153|YGI5_YEAST -UNCLASSIFIED1007, 1013, 1024HYPOTHETICAL 32.1 KD PROTEIN IN MAD1-SCY1 INTERGENICREGION195180491860 (1119, 1120)Novel Protein sim. GBank gi|1723900|sp|P53140|YGK7_YEAST -UNCLASSIFIED1004, 1006, 1007, 1010,HYPOTHETICAL 74.6 KD PROTEIN IN TAF60-G4P1 INTERGENIC1015, 1020, 1025, 1031,REGION1036, 1041195220726486 (2759, 2760)Novel Protein sim. GBank gi|1723907|sp|P53133|YGL7_YEAST -UNCLASSIFIED1004HYPOTHETICAL 30.8 KD PROTEIN IN ABC1-CDC20 INTERGENICREGION195357293171 (865, 866)Novel Protein sim. GBank gi|1723950|sp|P53094|MDS3_YEAST - MDS3UNCLASSIFIED1008, 1020, 1022, 1024,PROTEIN (MCK1 DOSAGE SUPPRESSOR 3)1031195430385147 (7437, 7438)Novel Protein sim. GBank gi|1723969|sp|P53075|YGX8_YEAST -UNCLASSIFIED1002, 1008,1020, 1022HYPOTHETICAL 66.9 KD PROTEIN IN SAP4-OST5 INTERGENICREGION195557294333 (6675, 6676)Novel Protein sim. GBank gi|1723978|sp|P53066|YGZ2_YEAST -UNCLASSIFIED1003, 1004, 1006, 1015,HYPOTHETICAL 20.1 KD PROTEIN IN RTF1-CSE1 INTERGENIC1020, 1022, 1031REGION195656151668 (5747, 5748)Novel Protein sim. GBank gi|1724028|sp|P43976|YIIM_HAEIN -UNCLASSIFIED1002HYPOTHETICAL PROTEIN HI0278195727981007 (7395, 7396)Novel Protein sim. GBank gi|1730680|sp|P53736|YN8O_YEAST -UNCLASSIFIED1020HYPOTHETICAL 28.6 KD PROTEIN IN DBP6-COQ2 INTERGENICREGION195880478120 (1809, 1810)Novel Protein sim. GBank gi|1730708|sp|P53977|YNB7_YEAST -UNCLASSIFIED1002, 1003, 1004, 1007,HYPOTHETICAL 12.5 KD PROTEIN IN HDA1-PUB1 INTERGENIC1008, 1010, 1015, 1020,REGION1022, 1025, 1028, 1035195916540378 (6765, 6766)Novel Protein sim. GBank gi|1730818|sp|P54964|YNT2_YEAST - YNT20UNCLASSIFIED1036PROTEIN196079444729 (8125, 8126)Novel Protein sim. GBank gi|1730834|sp|P53857|YNX4_YEAST -UNCLASSIFIED1031HYPOTHETICAL 47.8 KD PROTEIN IN SIN4-URE2 INTERGENICREGION196179233614 (6111, 6112)Novel Protein sim. GBank gi|1749442|dbj|BAA13779| - (D89117) similarUNCLASSIFIED1001to Saccharomyces cerevisiae P9642.2 gene product, GENBANKAccession Number U40828 [Schizosaccharomyces pombe]196285800340 (7403, 7404)Novel Protein sim. GBank gi|1750282 (U81808) - putative gamma-UNCLASSIFIED1023glutamylcysteine synthetase [Thiobacillus ferrooxidans]196380503461 (5595, 5596)Novel Protein sim. GBank gi|1771524|emb|CAA67934| - (X99622)UNCLASSIFIED1008, 1010, 1023muconate cycloisomerase [Rhodococcus opacus]196439540480 (3557, 3558)Novel Protein sim. GBank gi|1781037|emb|CAA64772| - (X95518)UNCLASSIFIED1036, 1055neuronal tyrosine threonine phosphatase 1 [Mus musculus]196577687658 (833, 834)Novel Protein sim. GBank gi|1781049|emb|CAB06185| - (Z83863)UNCLASSIFIED1022hypothetical protein Rv2553c [Mycobacterium tuberculosis]196685801478 (545, 546)Novel Protein sim. GBank gi|1840087 (U83280) - 39 kDa antigenUNCLASSIFIED1035[Leishmania donovani]196728382493 (4403, 4404)Novel Protein sim. GBank gi|1864015|dbj|BAA13521| - (D87968) SHPS-1UNCLASSIFIED1041[Mus musculus]196851728564 (3139, 3140)Novel Protein sim. GBank gi|1870011|emb|CAB06862| - (Z92539) prsAUNCLASSIFIED1037[Mycobacterium tuberculosis]196979862366 (4745, 4746)Novel Protein sim. GBank gi|1877272|emb|CAB07053| - (Z92770)UNCLASSIFIED1010hypothetical protein Rv0147 [Mycobacterium tuberculosis]197079617104 (4393, 4394)Novel Protein sim. GBank gi|1877369|emb|CAB07121| - (Z92772) echA3UNCLASSIFIED1031[Mycobacterium tuberculosis]197120385917 (4387, 4388)Novel Protein sim. GBank gi|1881338|dbj|BAA19365| - (AB001488)UNCLASSIFIED1003PROBABLE INTEGRAL MEMBRANE PROTEIN, SIMILAR TOCHLORAMPHENICOL RESISTANCE PROTEIN OF STREPTOMYCESVENEZUELAE. [Bacillus subtilis]197265981896 (3219, 3220)Novel Protein sim. GBank gi|1883006|emb|CAA72271| - (Y11483)UNCLASSIFIED1006, 1022, 1041jasmonate inducible protein [Brassica napus]197336857907 (3633, 3634)Novel Protein sim. GBank gi|1890582|emb|CAB01955| - (Z79692) ORF23UNCLASSIFIED1014[Sinorhizobium meliloti]197491236500 (7181, 7182)Novel Protein sim. GBank gi|1914685|emb|CAA72742| - (Y12014) RAD23UNCLASSIFIED1002protein, isoform II [Daucus carota]197535356258 (747, 748)Novel Protein sim. GBank gi|2065210|emb|CAA73251| - (Y12713) Pro-PolUNCLASSIFIED1014dUTPase polyprotein [Mus musculus]197687912784 (3575, 3576)Novel Protein sim. GBank gi|2065210|emb|CAA73251| - (Y12713) Pro-PolUNCLASSIFIED1016dUTPase polyprotein [Mus musculus]197734387207 (3617, 3618)Novel Protein sim. GBank gi|2065210|emb|CAA73251| - (Y12713) Pro-PolUNCLASSIFIED1024dUTPase polyprotein [Mus musculus]197828992228 (5395, 5396)Novel Protein sim. GBank gi|2072553 (AF001395) - salT gene productUNCLASSIFIED1015[Oryza sativa]197952481605 (6937, 6938)Novel Protein sim. GBank gi|2072961 (U93568) - putative p150 [HomoUNCLASSIFIED1033sapiens]198039568585 (2305, 2306)Novel Protein sim. GBank gi|2072967 (U93570) - putative p150 [HomoUNCLASSIFIED1004sapiens]198185520677 (1447, 1448)Novel Protein sim. GBank gi|2105127 (U64984) - DNA adenineUNCLASSIFIED1008, 1046methyltransferase [Bacteriophage Mx8]198224111655 (1403, 1404)Novel Protein sim. GBank gi|21117310|emb|CAB09116.1| - (Z95620)UNCLASSIFIED1041hypothetical protein [Schizosaccharomyces pombe]198311076468 (5173, 5174)Novel Protein sim. GBank gi|2119707|pir||A42817 - proline-rich proteinUNCLASSIFIED1020precursor-rat198437799396 (4253, 4254)Novel Protein sim. GBank gi|2120083|pir||I38588 - transposon LRE2UNCLASSIFIED1010reverse transcriptase homolog - human198594631768 (8757, 8758)Novel Protein sim. GBank gi|2121115|pir||I41292 - EcoE type I restriction-UNCLASSIFIED1022, 1025, 1028modification enzyme R subunit - Escherichia coil198620288144 (9055, 9056)Novel Protein sim. GBank gi|2126000|pir||I76771 - phosphomannomutaseUNCLASSIFIED1031(EC 5.4.2.8) - Eacherichia coli198727970336 (8291, 8292)Novel Protein sim. GBank gi|2126373|pir||I40646 - sensor-like protein -UNCLASSIFIED1050Coxiella bumetil198829448135 (343, 344)Novel Protein sim. GBank gi|2129717|pir||S71185 - ribonucleoprotein -UNCLASSIFIED1024Arabidopsis thaliana198980236325 (3171, 3172)Novel Protein sim. GBank gi|2131374|pir||S567806 - hypothetical proteinUNCLASSIFIED1004, 1008, 1020, 1041YDL242w - yeast (Saccharomyces cerevisiae)199038925223 (5743, 5744)Novel Protein sim. GBank gi|2131397|pir||S61589 - hypothetical proteinUNCLASSIFIED1006YDR206w - yeaet (Saccharomyces cerevisiae)199180077468 (4867, 4868)Novel Protein sim. GBank gi|21314101pir||S70223 - hypothetical proteinUNCLASSIFIED1020YDR274c - yeast (Saccharomyces cerevisiae)199280306740 (2589, 2590)Novel Protein sim. GBank gi|2131497|pir||S69724 - hypothetical proteinUNCLASSIFIED1020YDR445c - yeast (Saccharomyces cerevisiae)199378936150 (7101, 7102)Novel Protein sim. GBank gi|2131507|pir||S69627 - hypothetical proteinUNCLASSIFIED1041YDR459c - yeast (Saccharomyces cerevisiae)199478784628 (225, 226)Novel Protein sim. GBank gi|2131736|pir||S64794 - hypothetical proteinUNCLASSIFIED1007, 1020YLL042c - yeast (Saccharomyces cerevisiae)199578997841 (5761, 5762)Novel Protein sim. GBank gi|2131741|pir||S64829 - hypothetical proteinUNCLASSIFIED1021YLR007w - yeast (Saccharomyces cerevisiae)199625326496 (3897, 3898)Novel Protein sim. GBank gi|2131751|pir||S64841 - hypothetical proteinUNCLASSIFIED1024YLR019w - yeast (Saccharomyces cerevisiae)199782064955 (485, 486)Novel Protein sim. GBank gi|2131784|pir||S64954 - hypothetical proteinUNCLASSIFIED1001, 1002, 1003, 1004,YLR117c - yeast (Saccharomyces cerevisiae)1006, 1007, 1008, 1010,1014, 1015, 1020, 1021,1022, 1024, 1025, 1026,1028, 1031, 1035, 1036,1041,1051199879398243 (5053, 5054)Novel Protein sim. GBank gi|2131821|pir||S69852 - hypothetical proteinUNCLASSIFIED1004, 1015YML031c-a - yeast (Saccharomyces cerevisiae)199978967763 (2783, 2784)Novel Protein sim. GBank gi|2131998|pir||S66719 - hypothetical proteinUNCLASSIFIED1006, 1007, 1015, 1020,YOL036w - yeast (Saccharomyces cerevisiae)1021, 1041200078382826 (2367, 2368)Novel Protein sim. GBank gi|2132006|pir||S66763 - hypothetical proteinUNCLASSIFIED1015YOL070c - yeast (Saccharomyces cerevisiae)200120297705 (3969, 3970)Novel Protein sim. GBank gi|2132015|pir||S63445 - hypothetical proteinUNCLASSIFIED1031YOL125w - yeast (Saccharomyces cerevisiae)200229689007 (4523, 4524)Novel Protein sim. GBank gi|2132060|pir||S60992 - hypothetical proteinUNCLASSIFIED1007, 1051YOR112w - yeast (Saccharomyces cerevisiae)200356484781 (8513, 8514)Novel Protein sim. GBank gi|2132082|pir||S67087 - hypothetical proteinUNCLASSIFIED1002YOR195w - yeast (Saccharomyces cerevisiae)200420760680 (4027, 4028)Novel Protein sim. GBank gi|2132103|pir||S67155 - hypothetical proteinUNCLASSIFIED1055YOR258w - yeast (Saccharomyces cerevisiae)200594646976 (5423, 5424)Novel Protein sim. GBank gi|2132149|pir||S63463 - hypothetical proteinUNCLASSIFIED1022, 1035YPL019c - yeast (Saccharomyces cerevisiae)200679835331 (6441, 6442)Novel Protein sim. GBank gi|2132170|pir||S60928 - hypothetical proteinUNCLASSIFIED1002, 1021, 1035YPL062w - yeast (Saccharomyces cerevisiae)200765462081 (8293, 8294)Novel Protein sim. GBank gi|2132177|pir||S61115 - hypothetical proteinUNCLASSIFIED1046YPL071c - yeast (Saccharomyces cerevisiae)200880473352 (1985, 1986)Novel Protein sim. GBank gi|2132192|pir||S69458 - hypothetical proteinUNCLASSIFIED1001, 1002, 1003, 1004,YPL114w - yeast (Saccharomyces cerevisiae)1006, 1007, 1008, 1010,1015, 1020, 1022, 1024,1025, 1031, 1041200920416576 (465, 466)Novel Protein sim. GBank gi|2132244|pir||S61023 - hypothetical proteinUNCLASSIFIED1022YPL242c - yeast (Saccharomyces cerevisiae)201021149717 (3521, 3522)Novel Protein sim. GBank gi|2132443|pir||S67691 - probable membraneUNCLASSIFIED1031protein YDL144c - yeast (Saccharomyces cerevisiae)201120545269 (8779, 8780)Novel Protein sim. GBank gi|2132455|pir||S67742 - probable membraneUNCLASSIFIED1020protein YDL187c - yeast (Saccharomyces cerevisiae)201279618317 (517, 518)Novel Protein sim. GBank gi|2132963|pir||S67301 - probable membraneUNCLASSIFIED1003protein YOR389w - yeast (Saccharomyces cerevisiae)201329360306 (4567, 4568)Novel Protein sim. GBank gi|2132975|pir||S61116 - probable membraneUNCLASSIFIED1020protein YPL070w - yeast (Saccharomyces cerevisiae)201428486368 (2051, 2052)Novel Protein sim. GBank gi|2133005|pir||S65243 - probable membraneUNCLASSIFIED1020protein YPL224c - yeast (Saccharomyces cerevisiae)201580216525 (1487, 1488)Novel Protein sim. GBank gi|2133018|pir||S65313 - probable membraneUNCLASSIFIED1003, 1006, 1007, 1008,protein YPL280w - yeast (Saccharomyces cerevisiae)1015, 1020, 1022, 1023,1024, 1028, 1036, 1041,201625150624 (3619, 3620)Novel Protein sim. GBank gi|2133036|pir||S59823 - probable membraneUNCLASSIFIED1041protein YPR164w - yeast (Saccharomyces cerevisiae)201780502266 (5117, 5118)Novel Protein sim. GBank gi|2133036|pir||S59823 - probable membraneUNCLASSIFIED1002, 1004, 1010, 1015,protein YPR164w - yeast (Saccharomyces cerevisiae)1020, 1021, 1022, 1031201878732260 (3497, 3498)Novel Protein sim. GBank gi|2133039|pir||S59841 - probable membraneUNCLASSIFIED1006protein YPR184w - yeast Saccharomyces cerevisiae)201987465190 (8829, 8830)Novel Protein sim. GBank gi|2134431|pir||I50209 - unknown protein -UNCLASSIFIED1023chicken (fragment)202020621913 (1315, 1316)Novel Protein sim. GBank gi|2134962|pir||S64705 - cyclophilin-like proteinUNCLASSIFIED1003CyP-60 - human202119895040 (1439, 1440)Novel Protein sim. GBank gi|2137043|pir||I46880 - unknown protein -UNCLASSIFIED1051rabbit (fragment)202227974865 (3805, 3806)Novel Protein sim. GBank gi|2143815|pir||S59131 - Kan-1 protein - ratUNCLASSIFIED1003202386475747 (2751, 2752)Novel Protein sim. GBank gi|2145909|pir||S72946 - lexA protein -UNCLASSIFIED1045Mycobacterium leprae202495010828 (8577, 6578)Novel Protein sim. GBank gi|2182087|emb|CAA73844| - (Y13432)UNCLASSIFIED1015hypothetical protein [Sinorhizobium meliloti]202517903058 (5359, 5360)Novel Protein sim. GBank gi|218496|dbj|BAA02301| - (D12917) aUNCLASSIFIED1002component of the pheromone signal transduction pathway[Saccharomyces cerevisiae]202665459142 (8357, 8358)Novel Protein sim. GBank gi|2222753|emb|CAB09977| - (Z97182)UNCLASSIFIED1051hypothetical protein Rv0605 [Mycobacterium tuberculosis]202765687631 (3193, 3194)Novel Protein sim. GBank gi|2226005 (U49973) - ORF2: functionUNCLASSIFIED1043, 1046unknown [Homo sapiens]202833187585 (6267, 6268)Novel Protein sim. GBank gi|2226005 (U49973) - ORF2: functionUNCLASSIFIED1024unknown [Homo sapiens]202978749690 (6677, 6678)Novel Protein sim. GBank gi|2226256|emb|CAA74543.1| - (Y14084)UNCLASSIFIED1007hypothetical protein [Bacillus subtilis]203036826780 (383, 384)Novel Protein sim. GBank gi|2244792|emb|CAB10215.1| - (Z97336)UNCLASSIFIED1051ankyrin like protein [Arabidopsis thaliana]203117885054 (91, 92)Novel Protein sim. GBank gi|226591|prf||1603238B - ATP synthase 18 kD-UNCLASSIFIED1022like protein 4 [Saccharomycetales]203227964418 (2593, 2594)Novel Protein sim. GBank gi|226591|prf||1603238B - ATP synthase 18 kD-UNCLASSIFIED1021, 1031like protein 4 [Saccharomycetales]203321414260 (7701, 7702)Novel Protein sim. GBank gi|2274845|dbj|BAA21534| - (D88461) N-UNCLASSIFIED1022WASP [Rattus rattus]203478674870 (2951, 2952)Novel Protein sim. GBank gi|2276394 (U16156) - bifunctional aldolase-UNCLASSIFIED1015pyrophosphokinase [Streptococcus pneumoniae]203580060440 (5437, 5438)Novel Protein sim. GBank gi|2293294 (AF008220) - YtjA [Bacillus subtilis]UNCLASSIFIED1022203637806838 (1517, 1518)Novel Protein sim. GBank gi|2293302 (AF008220) - YtqA [BacillusUNCLASSIFIED1055subtilis]203757288317 (6035, 6036)Novel Protein sim. GBank gi|2313504|gb|AAD07468.1| - (AE000555) H.UNCLASSIFIED1031, 1050pylori predicted coding region HP0386 [Helicobacter pylori 26695]203880209588 (6881, 6882)Novel Protein sim. GBank gi|2314493|gb|AAD08369.1| - (AE000634)UNCLASSIFIED1031cation efflux system protein (czcA) [Helicobacter pylori 26695]203915006975 (4621, 4622)Novel Protein sim. GBank gi|232127|sp|P30191|GAA6_RAT - GAMMA-UNCLASSIFIED1025AMINOBUTYRIC-ACID RECEPTOR ALPHA-6 SUBUNIT PRECURSOR(GABA(A) RECEPTOR)204085549721 (5849, 5850)Novel Protein sim. GBank gi|2326720|emb|CAA64757| - (X95503) zincUNCLASSIFIED1014, 1022, 1050finger protein [Mus musculus]204134408950 (8853, 8854)Novel Protein sim. GBank gi|2326756|emb|CAB10970| - (Z98268)UNCLASSIFIED1024hypothetical protein Rv1713 [Mycobacterium tuberculosis]204279876968 (4933, 4934)Novel Protein sim. GBank gi|2330863|emb|CAB11100| - (Z98533) mma 3′-UNCLASSIFIED1015end processing protein ma14. [Schizosaccharomyces pombe]204379853004 (2295, 2296)Novel Protein sim. GBank gi|2340079|gb|AAB67303.1| - (U59485) AttHUNCLASSIFIED1036, 1041[Agrobacterium tumefaciens]204478392934 (171, 172)Novel Protein sim. GBank gi|2384732 (AF015911) - NAC-1 protein [RattusUNCLASSIFIED1006norvegicus]20458358495 (6685, 6686)Novel Protein sim. GBank gi|2388584 (AC000098) - EST gb|ATTS1136UNCLASSIFIED1003comes from this gene. [Arabidopsis thaliana]204666002976 (1011, 1012)Novel Protein sim. GBank gi|2388966|emb|CAB11699| - (Z98979)UNCLASSIFIED1008putative phosphatidylserine decarboxylase proenzyme[Schizosaccharomyces pombe]204778723438 (8475, 8476)Novel Protein sim. GBank gi|2494842|sp|Q12001|ALG6_YEAST -UNCLASSIFIED1002, 1006, 1015, 1020,GLUCOSYLTRANSFERASE ALG61024, 1036204866376633 (6009, 6010)Novel Protein sim. GBank gi|2495497|sp|P77489|YAGR_ECOLI -UNCLASSIFIED1007HYPOTHETICAL 78.1 KD PROTEIN IN INTF-EAEH INTERGENICREGION204910193191 (4363, 4364)Novel Protein sim. GBank gi|2495538|sp|P77717|YBAY_ECOLI -UNCLASSIFIED1001HYPOTHETICAL 19.4 KD LIPOPROTEIN IN TESB-HHA INTERGENICREGION PRECURSOR205078958713 (8037, 8038)Novel Protein sim. GBank gi|2496666|sp|P55508|Y4JH_RHISN -UNCLASSIFIED1006HYPOTHETICAL 23.0 KD PROTEIN Y4JH205129355668 (4893, 4894)Novel Protein sim. GBank gi|2497080|sp|Q03640|YMH2_YEAST -UNCLASSIFIED1007HYPOTHETICAL 171.1 KD PROTEIN IN YL16A-DAK1 INTERGENICREGION205280218984 (1981, 1982)Novel Protein sim. GBank gi|2497127|sp|Q05131|YMS4_YEAST -UNCLASSIFIED1003, 1004, 1010, 1020,HYPOTHETICAL 48.4 KD PROTEIN IN ARP9-IMP2 INTERGENIC1021, 1022, 1027, 1031,REGION1035205357292207 (4687, 4688)Novel Protein sim. GBank gi|2497127|sp|Q05131|YMS4_YEAST -UNCLASSIFIED1004, 1020HYPOTHETICAL 48.4 KD PROTEIN IN ARP9-IMP2 INTERGENICREGION205427837596 (6573, 6574)Novel Protein sim. GBank gi|2497145|sp|Q04304|YMY0_YEAST -UNCLASSIFIED1008, 1020, 1022, 1041HYPOTHETICAL 24.9 KD PROTEIN IN RCA1-NPL6 INTERGENICREGION205520441416 (9067, 9068)Novel Protein sim. GBank gi|2497150|sp|Q04436|YMZ3_YEAST -UNCLASSIFIED1022HYPOTHETICAL 13.3 KD PROTEIN IN SNZ1-YPK2 INTERGENICREGION205678751846 (7047, 7048)Novel Protein sim. GBank gi|2497168|sp|Q03823|YM35_YEAST -UNCLASSIFIED1024HYPOTHETICAL 95.1 KD PROTEIN IN IMP1-HLJ1 INTERGENICREGION205780467122 (731, 732)Novel Protein sim. GBank gi|2497174|sp|Q03218|YM43_YEAST -UNCLASSIFIED1001, 1002, 1004, 1006,HYPOTHETICAL 58.2 KD PROTEIN IN SIP18-SPT21 INTERGENIC1007, 1008, 1010, 1015,REGION1020, 1021, 1024, 1031,1038, 1041205880218524 (6461, 6462)Novel Protein sim. GBank gi|2497179|sp|Q12751|YM48_YEAST -UNCLASSIFIED1004, 1014, 1015, 1020HYPOTHETICAL 113.2 KD PROTEIN IN SSO2-HSC82 INTERGENICREGION205980223378 (4317, 4318)Novel Protein sim. GBank gi|2497182|sp|Q04329|YM53_YEAST -UNCLASSIFIED1020, 1022, 1036HYPOTHETICAL 14.3 KD PROTEIN IN RPL39-VTI1 INTERGENICREGION206095317140 (8593, 8594)Novel Protein sim. GBank gi|2497197|sp|Q05027|YM75_YEAST -UNCLASSIFIED1001, 1002, 1003, 1004,HYPOTHETICAL 17.3 KD PROTEIN IN RNA1-RNT1 INTERGENIC1006, 1008, 1010, 1014,REGION1015, 1020, 1022, 1024,1026, 1028, 1031, 1035,1042206110328702 (1709, 1710)Novel Protein sim. GBank gi|2497226|sp|Q04869|YM94_YEAST -UNCLASSIFIED1023HYPOTHETICAL 38.2 KD PROTEIN IN PRE5-FET4 INTERGENICREGION206280258357 (3463, 3464)Novel Protein sim. GBank gi|2497948|sp|Q12428|YP02_YEAST -UNCLASSIFIED1007, 1020HYPOTHETICAL 57.7 KD PROTEIN IN CIT3-HAL1 INTERGENICREGION206379816346 (5651, 5652)Novel Protein sim. GBank gi|2498298|sp|Q12387|DEC1_YEAST - DEC1UNCLASSIFIED1001, 1004, 1020, 1022,PROTEIN (MDM20 PROTEIN)1024206436849914 (719, 720)Novel Protein sim. GBank gi|2498325|sp|Q62894|ECM1_RAT -UNCLASSIFIED1050EXTRACELLULAR MATRIX PROTEIN 1 (SECRETORY COMPONENTP85)206580217443 (401, 402)Novel Protein sim. GBank gi|2498859|sp|Q02805|ROD1_YEAST - ROD1UNCLASSIFIED1002, 1003, 1004, 1008,PROTEIN1015, 1022, 1055206647656827 (2009, 2010)Novel Protein sim. GBank gi|2500719|sp|Q50612|SEA2_MYCTU -UNCLASSIFIED1026PREPROTEIN TRANSLOCASE SECA 2 SUBUNIT206780503916 (1555, 1556)Novel Protein sim. GBank gi|2500728|sp|Q59912|SECY_STRGB -UNCLASSIFIED1010, 1021, 1022PREPROTEIN TRANSLOCASE SECY SUBUNIT206879603634 (5809, 5810)Novel Protein sim. GBank gi|2506924|sp|P49754|VP41_HUMAN -UNCLASSIFIED1031VACUOLAR ASSEMBLY PROTEIN VPS41 HOMOLOG (S53)206936831196 (3665, 3666)Novel Protein sim. GBank gi|2507089|sp|P31554|OSTA_ECOLI -UNCLASSIFIED1051ORGANIC SOLVENT TOLERANCE PROTEIN PRECURSOR207012904352 (3385, 3386)Novel Protein sim. GBank gi|2507430|sp|P07395|SYFB_ECOLI -UNCLASSIFIED1003PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN(PHENYLALANINE-TRNA LIGASE BETA CHAIN) (PHERS)20718490739 (3091, 3092)Novel Protein sim. GBank gi|254450|bbs|112161 - (S44213)UNCLASSIFIED1022YKL525 = TUP1 homolog [Saccharomyces cerevisiae, Peptide, 849 aa](Saccharomyces cerevisiae]207287453418 (5941, 5942)Novel Protein sim. GBank gi|2618699 (AC002510) - unknown proteinUNCLASSIFIED1023[Arabidopsis thaliana]207333205947 (1311, 1312)Novel Protein sim. GBank gi|2624970 (AF020312) - proline-rich protein 9-1UNCLASSIFIED1024[Mus musculus]207479571610 (333, 334)Novel Protein sim. GBank gi|2626836|dbj|BAA23413| - (D86947)UNCLASSIFIED1015chemotactic transducer [Pseudomonas aeruginosa]207520292038 (4973, 4974)Novel Protein sim. GBank gi|2634032|emb|CAB13533| - (Z99112) nusAUNCLASSIFIED1031[Bacillus subtilis]207639460161 (2425, 2426)Novel Protein sim. GBank gi|2635815|emb|CAB15308| - (Z99120) similarUNCLASSIFIED1003to iron-binding protein [Bacillus subtilis]207757292229 (4333, 4334)Novel Protein sim. GBank gi|2644|emb|CAA41257| - (X58363) Pet127UNCLASSIFIED1002, 1020, 1036[Saccharomyces cerevisiae]207871753462 (4017, 4018)Novel Protein sim. GBank gi|2660676 (AC002342) - Dreg-2 like proteinUNCLASSIFIED1021[Arabidopsis thaliana]207928976545 (6885, 6886)Novel Protein sim. GBank gi|2662054|dbj|BAA23678| - (AB004651)UNCLASSIFIED1024isocitrate lyase [Hyphomicroblum methylovorum]208079574400 (3877, 3878)Novel Protein sim. GBank gi|2688682 (AE001174) - conservedUNCLASSIFIED1028hypothetical protein [Borrelia burgdorferi]208171744800 (3203, 3204)Novel Protein sim. GBank gi|2707972 (U76754) - unknown [MusUNCLASSIFIED1002, 1036musculus]208278926051 (3705, 3706)Novel Protein sim. GBank gi|2791412|emb|CAA16006| - (AL021184)UNCLASSIFIED1006hypothetical protein Rv1478 [Mycobacterium tuberculosis]208338340009 (5697, 5698)Novel Protein sim. GBank gi|2791586|emb|CAA16074.1| - (AL021287)UNCLASSIFIED1006, 1010hypothetical protein Rv2989 [Mycobacterium tuberculosis]208480079283 (4507, 4508)Novel Protein sim, GBank gi|2791610|emb|CAA16098.1| - (AL021287)UNCLASSIFIED1024, 1031hypothetical protein Rv3013 [Mycobacterium tuberculosis]208578769005 (7241, 7242)Novel Protein sim. GBank gi|2815315|emb|CAA16438| - (AL021529)UNCLASSIFIED1015hypothetical protein SC10A5.06 [Streptomyces coelicolor]208686672815 (5391, 5392)Novel Protein sim. GBank gi|2827605|emb|CAA16660| - (AL021646)UNCLASSIFIED1017hypothetical protein Rv3195 [Mycobacterium tuberculosis]208787464388 (8079, 8080)Novel Protein sim. GBank gi|282994|pir||S27762 - Sip1 protein - barleyUNCLASSIFIED1023208866314545 (6995, 6996)Novel Protein sim. GBank gi|2832228 (AF012126) - zinc finger proteinUNCLASSIFIED1014, 1033[Homo sapiens]208928465093 (117, 118)Novel Protein sim. GBank gi|2833481|sp|Q57122|Y322_HAEIN -UNCLASSIFIED1014HYPOTHETICAL PROTEIN HI0322209066770629 (4873, 4874)Novel Protein sim. GBank gi|2853221 (U72953) - merozoite surfaceUNCLASSIFIED1046porotein 2 [Plasmodium falciparum]209177706782 (6089, 6090)Novel Protein sim. GBank gi|2853301 (AF007194) - mucin [HomoUNCLASSIFIED1041sapiens]209286473162 (6591, 6592)Novel Protein sim. GBank gi|2894254|emb|CAA17116.1| - (AL021841)UNCLASSIFIED1026PE_PGRS [Mycobacterium tuberculosis]209334082841 (6763, 6764)Novel Protein sim. GBank gi|2895563 (AF041083) - RoBo-1 [RattusUNCLASSIFIED1000norvegicus]209419848631 (4499, 4500)Novel Protein sim. GBank gi|2896702|emb|CAA17181.1| - (AL021897)UNCLASSIFIED1031hypothetical protein Rv1065 [Mycobacterium tuberculosis]209578387912 (2437, 2438)Novel Protein sim. GBank gi|2911858 (AF047659) - No definition lineUNCLASSIFIED1024, 1043found [Caenorhabditis elegans]209620562660 (4177, 4178)Novel Protein sim. GBank gi|2960089|emb|CAA17987.1| - (AL022121)UNCLASSIFIED1055dppB [Mycobacterium tuberculosis]20978516281 (1801, 1802)Novel Protein sim. GBank gi|2981631|dbj|BAA25253.1| - (AB012223)UNCLASSIFIED1050ORF2 [Canis familiaris]209810249120 (4117, 4118)Novel Protein sim. GBank gi|2981631|dbj|BAA25253.1| - (AB012223)UNCLASSIFIED1001ORF2 [Canis familiaris]209965652525 (4655, 4656)Novel Protein sim. GBank gi|2981631|dbj|BAA25253.1| - (AB012223)UNCLASSIFIED1051ORF2 [Canis familiaris]210078094837 (6731, 6732)Novel Protein sim. GBank gi|2981631|dbj|BAA25253.1| - (AB012223)UNCLASSIFIED1039ORF2 [Canis familiaris]210112904356 (3471, 3472)Novel Protein sim. GBank gi|2982245 (AF051205) - hypothetical proteinUNCLASSIFIED1028, 1047[Picea mariana]210210198085 (6605, 6606)Novel Protein sim. GBank gi|2982986 (AE000682) - putative proteinUNCLASSIFIED1001[Aquifex aeolicus]210339575224 (5485, 5486)Novel Protein sim. GBank gi|2995313|emb|CAA18341| - (AL022268)UNCLASSIFIED1028ribonucleotide reductase [Streptomyces coelicolor]210470637364 (657, 658)Novel Protein sim. GBank gi|3006156|emb|CAA18397| - (AL022299)UNCLASSIFIED1046putative serine palmitoyltransferase [Schizosaccharomyces pombe]210525239501 (2863, 2864)Novel Protein sim. GBank gi|3024056|sp|Q63416|ITH3_RAT - INTER-UNCLASSIFIED1007ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN H3 PRECURSOR (ITIHEAVY CHAIN H3)210680090827 (6553, 6554)Novel Protein sim. GBank gi|3025235|sp|P75978|YMFN_ECOLI -UNCLASSIFIED1002, 1004, 1015HYPOTHETICAL 50.9 KD PROTEIN IN INTE-PIN INTERGENIC REGION210766727476 (3173, 3174)Novel Protein sim. GBank gi|3025268|sp|P76585|YPHG_ECOLI -UNCLASSIFIED1046HYPOTHETICAL 127.3 KD PROTEIN IN CSIE-GLYA INTERGENICREGION210886689445 (8563, 8564)Novel Protein sim. GBank gi|3043598|dbj|BAA25463| - (AB011109)UNCLASSIFIED1023KIAA0537 protein [Homo sapiens]210978898885 (2055, 2056)Novel Protein sim. GBank gi|3043634|dbj|BAA25481| - (AB011127)UNCLASSIFIED1015KIAA0555 protein [Homo sapiens]211011356683 (1397, 1398)Novel Protein sim. GBank gi|3080425|emb|CAA18744.1| - (AL022604)UNCLASSIFIED1055putative protein [Arabidopsis thaliana]211186623883 (1203, 1204)Novel Protein sim. GBank gi|30851|emb|CAA44287| - (X62421)UNCLASSIFIED1044homologue to E. coli DnaJ protein [Homo sapiens]211229143504 (8655, 8656)Novel Protein sim. GBank gi|3114594 (AF041377) - cell death activatorUNCLASSIFIED1002, 1014CIDE-B [Mus musculus]211329346021 (57, 58)Novel Protein sim. GBank gi|3122400|sp|O35682|MUG_MOUSE -UNCLASSIFIED1020MYELOID UPREGULATED PROTEIN211411086263 (1867, 1868)Novel Protein sim. GBank gi|3122897|sp|O06284|SYK_MYCTU - LYSYL-UNCLASSIFIED1003TRNA SYNTHETASE (LYSINE-TRNA LIGASE) (LYSRS)211517891620 (1069, 1070)Novel Protein sim. GBank gi|3122933|sp|Q23623|TGT_CAEEL -UNCLASSIFIED1015PUTATIVE QUEUINE TRNA-RIBOSYLTRANSFERASE (TRNA-GUANINETRANSGLYCOSYLASE) (GUANINE INSERTION ENZYME)211695105734 (3179, 3180)Novel Protein sim. GBank gi|3128315 (AF010496) - potential secretionUNCLASSIFIED1008ATP-binding protein [Rhodobacter capsulatus]211720623991 (1411, 1412)Novel Protein sim. GBank gi|3130050|emb|CAA18995| - (AL023518)UNCLASSIFIED1003hypothetical protein [Schizosaccharomyces pombe]211882460088 (8443, 8444)Novel Protein sim. GBank gi|3183443|sp|Q46861|YGIQ_ECOLI -UNCLASSIFIED1001, 1031HYPOTHETICAL 46.9 KD PROTEIN IN METC-SUFI INTERGENICREGION211978796862 (4093, 4094)Navel Protein sim. GBank gi|3192897 (AF066071) - SP85; PsBUNCLASSIFIED1024[Dictyostelium discoldeum]212028491134 (4287, 4288)Novel Protein sim. GBank gi|3192897 (AF066071) - SP85; PsBUNCLASSIFIED1006[Dictyostelium discoldeum]212128384987 (4767, 4768)Novel Protein sim. GBank gi|320866|pir||S31262 - TYB4 protein - yeastUNCLASSIFIED1015(Saccharomyces cerevisiae) transposon Ty4212280055560 (3731, 3732)Novel Protein sim. GBank gi|3256517|dbj|BAA29200.1| - (AP000001)UNCLASSIFIED1003249aa long hypothetical protein [Pyrococcus horikoshil]212320438347 (3831, 3832)Novel Protein sim. GBank gi|3257180|dbj|BAA29863| - (AP000003) 391aaUNCLASSIFIED1022long hypothetical aspartate aminotransferase [Pyrococcus horikoshil]212495103910 (4049, 4050)Novel Protein sim. GBank gi|3269293|emb|CAA19726| - (AL030978)UNCLASSIFIED1002putative protein [Arabidopsis thaliana]212520465424 (8395, 8396)Novel Protein sim. GBank gi|3287868|sp|P87058|LAH1_SCHPO - LAUNCLASSIFIED1008PROTEIN HOMOLOG (LA RIBONUCLEOPROTEIN) (LA AUTOANTIGENHOMOLOG)212611360195 (8501, 8502)Novel Protein sim. GBank gi|3294241|emb|CAA19854| - (AL031031)UNCLASSIFIED1004phosphatidylglycerophosphate synthase [Streptomyces coelicolor]212771805911 (3683, 3684)Novel Protein sim. GBank gi|3328385 (AF076956) - prenylated SNAREUNCLASSIFIED1024protein Ykt6 [Mus musculus]212879635381 (5843, 5844)Novel Protein sim. GBank gi|3341658|emb|CAA13172| - (AJ231130) z70rUNCLASSIFIED1001[Vibrio cholerae]212937802734 (4537, 4538)Novel Protein sim. GBank gi|3342823 (AF076955) - eukaryotic translationUNCLASSIFIED1055initiation factor p28 subunit [Zea mays]213086685844 (5553, 5554)Novel Protein sim. GBank gi|3378420 (AF079317) - unknownUNCLASSIFIED1026[Sphingomonas aromaticivorans]213111295400 (3297, 3298)Novel Protein sim. GBank gi|3413320|emb|CAA06915| - (AJ006215) CMPUNCLASSIFIED1003N-acetylneuraminic acid synthetase [Mus musculus]213278460013 (6171, 6172)Novel Protein sim. GBank gi|3413408|emb|CAA20269| - (AL031231)UNCLASSIFIED1024ATP/GTP binding protein [Streptomyces coelicolor]213325250036 (4055, 4056)Novel Protein sim. GBank gi|3426039 (AC005168) - unknown proteinUNCLASSIFIED1041[Arabidopsis thaliana]213437061554 (8677, 8678)Novel Protein sim. GBank gi|3435201 (AF072467) - unknown [HomoUNCLASSIFIED1047sapiens]213579173375 (1243, 1244)Novel Protein sim. GBank gi|3449254|emb|CAA20398| - (AL031317)UNCLASSIFIED1003hypothetical protein SC6G4.20c [Streptomyces coelicolor]213613518323 (6869, 6870)Novel Protein sim. GBank gi|3449269|emb|CAA20413| - (AL031317)UNCLASSIFIED1022hypothetical protein SC6G4.35 [Streptomyces coelicolor]213730576868 (4611, 4612)Novel Protein sim. GBank gi|3495|emb|CAA27837| - (X04289) CDC39UNCLASSIFIED1007gene product (aa 1-834) [Saccharomyces cerevisiae]213810317780 (3011, 3012)Novel Protein sim. GBank gi|3510629 (AF047828) - syringomycinUNCLASSIFIED1021synthetase [Pseudomonas syringae pv. syringae]213987462072 (3347, 3348)Novel Protein sim. GBank gi|3582335 (AC005496) - unknown proteinUNCLASSIFIED1023[Arabidopsis thaliana]214086677733 (3957, 3958)Novel Protein sim. GBank gi|3639077 (AF090113) - AMPA receptorUNCLASSIFIED1045binding protein [Rattus norvegicus]214127261992 (4743, 4744)Novel Protein sim. GBank gi|3688173|emb|CAA21201| - (AL031804)UNCLASSIFIED1020putative protein [Arabidopsis thaliana]214220292030 (4839, 4840)Novel Protein sim. GBank gi|3722226 (AF058711) - essential Gc proteinUNCLASSIFIED1031[Neisseria gonorrhoeae]21435827990 (1833, 1834)Novel Protein sim. GBank gi|3738310 (AC005309) - putative nuclearUNCLASSIFIED1055protein [Arabidopsis thaliana]214479614206 (7739, 7740)Novel Protein sim. GBank gi|3786009 (AC005499) - unknown proteinUNCLASSIFIED1002[Arabidopsis thaliana]214520466623 (4871, 4872)Novel Protein sim. GBank gi|3790677 (AF099002) - similar to human 5′-UNCLASSIFIED1008nucleotidase (SW: P49902) [Caenorhabditis elegans]214678674885 (5371, 5372)Novel Protein sim. GBank gi|3818539 (AF071506) - TIMELESS proteinUNCLASSIFIED1015[Mus musculus]214711690248 (2181, 2182)Novel Protein sim. GBank gi|382209|prf||1819268A - tRNA guanineUNCLASSIFIED1028transglycosylase [Zymomonas mobills]214817282819 (2423, 2424)Novel Protein sim. GBank gi|3860634|emb|CAA14535| - (AJ235270)UNCLASSIFIED1036DEOXYGUANOSINETRIPHOSPHATE TRIPHOSPHOHYDROLASE(dgtP) [Rickettsia prowazekll]214921424850 (2033, 2034)Novel Protein sim. GBank gi|3873550|emb|CAA22127| - (AL033534)UNCLASSIFIED1020, 1022, 1031serine-rich protein [Schizosaccharomyces pombe]215079259168 (1755, 1756)Novel Protein sim. GBank gi|3875273|emb|CAB02862| - (Z81051)UNCLASSIFIED1022, 1027, 1038predicted using Genefinder; Similarity in 3′ end to Human KIAA0173protein (TR: Q14679); cDNA EST-EMBL: D33319 comes from this gene;cDNA EST EMBL: D34000 comes from this gene; cDNA ESTEMBL: D36110 comes from this gene; c . . .215116708710 (4739, 4740)Novel Protein sim. GBank gi|3875796|emb|CAA97788| - (Z73425)UNCLASSIFIED1021Similarity to Yeast hypothetical YIK9 protein (SW: YIK9_YEAST); cDNAEST EMBL: T01252 comes from this gene; cDNA EST EMBL: D33205comes from this gene; cDNA EST EMBL: D33955 comes from this gene;cDNA EST EMBL: D35484 comes . . .215213509387 (2847, 2848)Novel Protein sim. GBank gi|3879239|emb|CAA92009| - (Z68010)UNCLASSIFIED1001T01C1.3 [Caenorhabditis elegans]21539398461 (7129, 7130)Novel Protein sim. GBank gi|3915465|sp|P77254|YFGK_ECOLI -UNCLASSIFIED1015, 1026HYPOTHETICAL GTP-BINDING PROTEIN IN XSEA-HISS INTERGENICREGION215487451985 (4765, 4766)Novel Protein sim. GBank gi|3928084 (AC005770) - retrotransposon-likeUNCLASSIFIED1023protein [Arabidopsis thaliana]215578376913 (4005, 4006)Novel Protein sim. GBank gi|3928726|emb|CAA22222| - (AL034355)UNCLASSIFIED1006, 1024hypothetical protein SCD78.17c [Streptomyces coelicolor]215620636325 (683, 684)Novel Protein sim. GBank gi|3929022 (AF057696) - LspB [HaemophilusUNCLASSIFIED1022ducreyl]215779573718 (7583, 7584)Novel Protein sim. GBank gi|3986409 (AF033350) - CDCREL-1 homologUNCLASSIFIED1014, 1015[Mus musculus]215878674796 (8627, 8628)Novel Protein sim. GBank gi|399339|sp|P30144|DAGA_ALTHA - NA(+)-UNCLASSIFIED1015LINKED D-ALANINE GLYCINE PERMEASE215980217591 (4405, 4406)Novel Protein sim. GBank gi|4000|emb|CAA38222| - (X54324) 43 kDUNCLASSIFIED1002, 1003, 1004, 1006,protein [Saccharomyces cerevisiae]1008, 1020, 1022, 1023,1024, 1031, 1035, 1036216078206888 (277, 278)Novel Protein sim. GBank gi|400533|sp|Q02373|NIDM_BOVIN - NADH-UNCLASSIFIED1020UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT (COMPLEX I-PDSW) (CI-PDSW)216120458975 (7509, 7510)Novel Protein sim. GBank gi|401542|sp|P31064|YEDE_ECOLI -UNCLASSIFIED1008HYPOTHETICAL 44.4 KD PROTEIN IN AMYA-FLIE INTERGENICREGION (ORF 48)216230251079 (2965, 2966)Novel Protein sim. GBank gi|401561|sp|P31120|MRSA_ECOLI - MRSAUNCLASSIFIED1041PROTEIN216320443675 (6371, 6372)Novel Protein sim. GBank gi|4050087 (AF109907) - S164 [Homo sapiens]UNCLASSIFIED1022216456653786 (1765, 1766)Novel Protein sim. GBank gi|406767|emb|CAA52645| - (X74551) MAC1UNCLASSIFIED1002, 1006, 1020, 1021protein [Saccharomyces cerevisiae]216529238378 (469, 470)Novel Protein sim. GBank gi|4129|emb|CAA30440| - (X07558) URFUNCLASSIFIED1001, 1003, 1020, 1031,[Saccharomyces cerevisiae]1041216620466807 (6363, 6364)Novel Protein sim. GBank gi|4139232|gb|AAD05169.1| - (AF110185)UNCLASSIFIED1008unknown [Burkholderia pseudomallel]216778977368 (8939, 8940)Novel Protein sim. GBank gi|414081|emb|CAA53202| - (X75449) RASUNCLASSIFIED1002GTPase-activating protein [Saccharomyces cerevisiae]216880209391 (2027, 2028)Novel Protein sim. GBank gi|4155476 (AE001519) - putative [HelicobacterUNCLASSIFIED1031pylori J99]216982108484 (2613, 2614)Novel Protein sim. GBank gi|416658|sp|P32448|ASF2_YEAST - ANTI-UNCLASSIFIED1001, 1002, 1003, 1004,SILENCING PROTEIN 21006, 1007, 1008, 1010,1014, 1015, 1020, 1021,1022, 1024, 1025, 1026,1028, 1031, 1035, 1036,1041217080219578 (4091, 4092)Novel Protein sim. GBank gi|416762|sp|P32797|CC13_YEAST - CELLUNCLASSIFIED1002, 1003, 1004, 1008,DIVISION CONTROL PROTEIN 131015, 1020, 1022, 1031217111798406 (931, 932)Novel Protein sim. GBank gi|416769|sp|P32558|CC68_YEAST - CELLUNCLASSIFIED1023DIVISION CONTROL PROTEIN 68217227366317 (2519, 2520)Novel Protein sim. GBank gi|416911|sp|P32461|DPH2_YEAST -UNCLASSIFIED1020DIPHTERIA TOXIN RESISTANCE PROTEIN 2217320711747 (4629, 4630)Novel Protein sim. GBank gi|416911|sp|P32461|DPH2_YEAST -UNCLASSIFIED1020DIPHTERIA TOXIN RESISTANCE PROTEIN 2217411818906 (2093, 2094)Novel Protein sim. GBank gi|417116|sp|P32396|HEMZ_BACSU -UNCLASSIFIED1003FERROCHELATASE (PROTOHEME FERRO-LYASE) (HEMESYNTHETASE)217514996440 (6761, 6762)Novel Protein sim. GBank gi|417457|sp|P32767|PDR6_YEAST -UNCLASSIFIED1022PLEIOTROPIC DRUG RESISTANCE REGULATORY PROTEIN 6217620483947 (6801, 6802)Novel Protein sim. GBank gi|417478|sp|P32522|PT09_YEAST - PET309UNCLASSIFIED1008PROTEIN PRECURSOR21778234455 (3893, 3894)Novel Protein sim. GBank gi|418501|sp|P32159|YIIP_ECOLI -UNCLASSIFIED1020HYPOTHETICAL 32.9 KD PROTEIN IN CPXA-PFKA INTERGENICREGION217857294505 (6107, 6108)Novel Protein sim. GBank gi|418609|sp|P32464|YKS9_YEAST -UNCLASSIFIED1003, 1008, 1015, 1022,HYPOTHETICAL 45.9 KD PROTEIN IN CNB1-PXA2 INTERGENIC1023REGION217921635624 (4843, 4844)Novel Protein sim. GBank gi|4200042|dbj|BAA74460| - (AB022715)UNCLASSIFIED1015, 1036exopolyphosphatase [Pseudomonas aeruginosa]218091215888 (1449, 1450)Novel Protein sim. GBank gi|423830|pir||A45690 - transactivator EBNA-2 -UNCLASSIFIED1003, 1014, 1051Herpesvirus papio HVP218120123764 (875, 876)Novel Protein sim. GBank gi|4322004|gb|AAD15907| - (AF069392) polarUNCLASSIFIED1031flagellar switch protein [Vibrio parahaemolyticus]218288094506 (4131, 4132)Novel Protein sim. GBank gi|433645|emb|CAA53420| - (X75781) D513UNCLASSIFIED1003, 1004, 1010, 1020,[Saccharomyces cerevisiae]1022, 1041, 105121836753363 (2721, 2722)Novel Protein sim. GBank gi|437726 (L23753) - MNN1 [SaccharomycesUNCLASSIFIED1020cerevisiae]218410331456 (7645, 7646)Novel Protein sim. GBank gi|4406780|gb|AAD20090| - (AC006532)UNCLASSIFIED1002putative multispanning membrane protein [Arabidopsis thaliana]218578970614 (3111, 3112)Novel Protein sim. GBank gi|441155 (L22219) - ransmission-blockingUNCLASSIFIED1014, 1024target antigen [Plasmodium falciparum]218639709654 (5379, 5380)Novel Protein sim. GBank gi|4415936|gb|AAD20166| - (AC006418)UNCLASSIFIED1002, 1041unknown protein [Arabidopsis thaliana]218778751849 (7125, 7126)Novel Protein sim. GBank gi|4416305|gb|AAD20310| - (AF105716)UNCLASSIFIED1002, 1015, 1020, 1024hypothetical protein [Zea mays]218878361431 (6365, 6366)Novel Protein sim. GBank gi|4455171|emb|CAB36703| - (AL035521)UNCLASSIFIED1006, 1024, 1043hypothetical protein [Arabidopsis thaliana]218980236049 (8061, 8062)Novel Protein sim. GBank gi|4468310|emb|CAB37991| - (AL031432)UNCLASSIFIED1004dJ465N24.1 (PUTATIVE novel protein similar to predicted yeast and wormproteins) [Homo sapiens]219079831273 (5507, 5508)Novel Protein sim. GBank gi|4468699|emb|CAB38153.1| - (AL035591)UNCLASSIFIED1021putative integral membrane export protein [Streptomyces coelicolor]219171088503 (6521, 6522)Novel Protein sim. GBank gi|4468699|emb|CAB38153.1| - (AL035591)UNCLASSIFIED1050putative integral membrane export protein [Streptomyces coelicolor]219227972146 (7167, 7168)Novel Protein sim. GBank gi|4493746|emb|CAB39088.1| - (AL034358)UNCLASSIFIED1020predicted using hexExon; L4830.10, Hypothetical protein, len: 816 aa[Leishmania major]219354696540 (8211, 8212)Novel Protein sim. GBank gi|4502037|ref|NP_003739.1|pALDH -UNCLASSIFIED1038UNKNOWN219427847651 (1287, 1288)Novel Protein sim. GBank gi|4502351|ref|NP_001692.1|pBAAT - bile acidUNCLASSIFIED1020, 1031Coenzyme A: amino acid N-acyltransferase; glycine N-choloyltransferase219556657161 (7565, 7566)Novel Protein sim. GBank gi|4504161|ref|NP_002083.1|pGRSF - G-richUNCLASSIFIED1006RNA sequence binding factor 1219671490095 (8531, 8532)Novel Protein sim. GBank gi|4504601|ref|NP_000865.1|pIFNA - interferonUNCLASSIFIED1010, 1039(alpha, beta and omega) receptor 2219778400768 (7077, 7078)Novel Protein sim. GBank gi|4505201|ref|NP_002411.1|pMLSN -UNCLASSIFIED1035melastatin 1219879843360 (8365, 8366)Novel Protein sim. GBank gi|4505323|ref|NP_003932.1|pN-WA -UNCLASSIFIED1006UNKNOWN219930510015 (6447, 6448)Novel Protein sim. GBank gi|4505891|ref|NP_001075.1|pPLOD -UNCLASSIFIED1014UNKNOWN220080219711 (1795, 1796)Novel Protein sim. GBank gi|4507367|ref|NP_003182.1|pTARS - threonyl-UNCLASSIFIED1002, 1004, 1020tRNA synthetase220128480351 (5845, 5846)Novel Protein sim. GBank gi|4507909|ref|NP_000368.1|pWAS| - Wiskott-UNCLASSIFIED1020Aldrich syndrome (ecezema-thrombocytopenla)220278720067 (7947, 7948)Novel Protein sim. GBank gi|451544 (U04267) - proline-rich cell wallUNCLASSIFIED1027protein [Gossypium barbadense]220380029393 (2885, 2886)Novel Protein sim. GBank gi|4539171|emb|CAB39700.1| - (AL049485)UNCLASSIFIED1003, 1004, 1006, 1031conserved hypothetical protein [Streptomyces coelicolor]220420372397 (5837, 5838)Novel Protein sim. GBank gi|4539386|emb|CAB37452.1| - (AL035526)UNCLASSIFIED1020extensin-like protein [Arabidopsis thaliana]220565851027 (6291, 6292)Novel Protein sim. GBank gi|4539386|emb|CAB37452.1| - (AL035526)UNCLASSIFIED1035extensin-like protein [Arabidopsis thaliana]220679457146 (1849, 1850)Novel Protein sim. GBank gi|4539582|emb|CAB38501.1| - (AL035636)UNCLASSIFIED1024, 1028putative sodium/proton antiporter [Streptomyces coelicolor]220711076626 (6669, 6670)Novel Protein sim. GBank gi|4579748|dbj|BAA75214.1| - (AB017484)UNCLASSIFIED1008tachylectin-3 [Tachypleus tridentatus]220879821967 (6821, 6822)Novel Protein sim. GBank gi|4580331|emb|CAB40107.1| - (AJ001206)UNCLASSIFIED1031putative glycogen debranching enzyme [Streptomyces coelicolor]220928483211 (9027, 9028)Novel Protein sim. GBank gi|4586056|gb|AAD25674.1|AC00702 -UNCLASSIFIED1002(AC007020) unknown protein [Arabidopsis thaliana]221079825487 (3997, 3998)Novel Protein sim. GBank gi|4586058|gb|AAD25676.1|AC00702 -UNCLASSIFIED1041(AC007020) unknown protein [Arabidopsis thaliana]221179167936 (1587, 1588)Novel Protein sim. GBank gi|4587990|gb|AAD25931.1|AF08527 -UNCLASSIFIED1028, 1047(AF085279) hypothetical protein [Arabidopsis thaliana]221227306125 (5175, 5176)Novel Protein sim. GBank gi|4604|emb|CAA49191| - (X69394) TBF1UNCLASSIFIED1002, 1021protein [Saccharomyces cerevisiae]221380218399 (8923, 8924)Novel Protein sim. GBank gi|461915|sp|P33894|DAP1_YEAST -UNCLASSIFIED1003, 1004, 1006, 1020,DIPEPTIDYL AMINOPEPTIDASE A (DPAP A) (YSCIV)1023, 1031, 1041221471764092 (323, 324)Novel Protein sim. GBank gi|462024|sp|P25087|ERG6_YEAST -UNCLASSIFIED1002DELTA(24)-STEROL C-METHYLTRANSFERASE221528781806 (767, 768)Novel Protein sim. GBank gi|462168|sp|P33892|GCN1_YEAST -UNCLASSIFIED1024TRANSLATIONAL ACTIVATOR GCN1221679854885 (7311, 7312)Novel Protein sim. GBank gi|462264|sp|P25519|HFLX_ECOLI - GTP-UNCLASSIFIED1021BINDING PROTEIN HFLX221778438796 (3395, 3396)Novel Protein sim. GBank gi|462489|sp|P33231|LLDP_ECOLI - L-UNCLASSIFIED1051LACTATE PERMEASE22189939622 (9041, 9042)Novel Protein sim. GBank gi|462663|sp|Q05869|MUTY_SALTY - A/G-UNCLASSIFIED1015SPECIFIC ADENINE GLYCOSYLASE221929259652 (3793, 3794)Novel Protein sim. GBank gi|464255|sp|P34943|NUEM_BOVIN - NADH-UNCLASSIFIED1024UBIQUINONE OXIDOREDUCTASE 39 KD SUBUNIT PRECURSOR(COMPLEX I-39 KD) (CI-39 KD)222046726384 (7597, 7598)Novel Protein sim. GBank gi|464376|sp|Q05017|PHLX_RABIT -UNCLASSIFIED1051PHOSPHOLIPASE ADRAB-B PRECURSOR222180042752 (1147, 1148)Novel Protein sim. GBank gi|465721|sp|P34252|YKK8_YEAST -UNCLASSIFIED1002, 1031HYPOTHETICAL 52.3 KD PROTEIN IN HAP4-AAT1 INTERGENICREGION222227837569 (1027, 1028)Novel Protein sim. GBank gi|466116|sp|P35193|YOI2_YEAST -UNCLASSIFIED1008, 1020, 1036HYPOTHETICAL 47.6 KD PROTEIN IN ADH1-IRA2 INTERGENICREGION222391228712 (2711, 2712)Novel Protein sim. GBank gi|466152|sp|P34653|YOT7_CAEEL -UNCLASSIFIED1004, 1008HYPOTHETICAL 76.2 KD PROTEIN ZK632.7 IN CHROMOSOME III222416327135 (8717, 8718)Novel Protein sim. GBank gi|4680180|gb|AAD27548.1|AF11170 -UNCLASSIFIED1008(AF111709) polyprotein [Oryza sativa subsp. indica]222523308893 (6287, 6288)Novel Protein sim. GBank gi|4680661|gb|AAD27720.1|AF13294 -UNCLASSIFIED1050(AF132945) CGI-11 protein [Homo sapiens]222628985623 (4533, 4534)Novel Protein sim. GBank gi|472525 (L31766) - synthetic lethal 39UNCLASSIFIED1024[Saccharomyces cerevisiae]222719532750 (6607, 6608)Navel Protein sim. GBank gi|4760782|dbj|BAA77399.1| - (A8025413) Ten-UNCLASSIFIED1035m4 [Mus musculus]222854539122 (8817, 8818)Novel Protein sim. GBank gi|476794|pir||A40678 - T-cell adhesionUNCLASSIFIED1037receptor CD2 homolog - African swine fever virus222978392965 (5091, 5092)Novel Protein sim. GBank gi|480450|pir||S36884 - ketol-acidUNCLASSIFIED1006reductolsomerase (EC 1.1.1.86) - Arabidopsis thaliana223080245872 (6351, 6352)Novel Protein sim. GBank gi|4808394|emb|CAB42726.1| - (AL049826)UNCLASSIFIED1004, 1007, 1022putative membrane protein [Streptomyces coelicolor]223125322209 (4127, 4128)Novel Protein sim. GBank gi|4827069|ref|NP_005086.1|pZNF2 - ZincUNCLASSIFIED1007finger protein 262223286472489 (5287, 5288)Novel Protein sim. GBank gi|482818 (U08864) - unknown [ParacoccusUNCLASSIFIED1017denitrificans]223311175105 (8541, 8542)Novel Protein sim. GBank gi|4868437|gb|AAD31316.1|AF14405 -UNCLASSIFIED1020(AF144054) apoptosis related protein APR-4 [Homo sapiens]223479633410 (2889, 2890)Novel Protein sim. GBank gi|4887120|gb|AAD32200.1| - (AF134855)UNCLASSIFIED1036transcriptional regulator [Salmonella typhimurium]223532174564 (4581, 4582)Novel Protein sim. GBank gi|4887211|gb|AAD32237.1|AF14744 -UNCLASSIFIED1003, 1036(AF147449) penicillin-binding protein 1B [Pseudomonas aeruginosa]223678791211 (4269, 4270)Novel Protein sim. GBank gi|4902474|emb|CAB43554.1| - (AJ131243) 5′-UNCLASSIFIED1007nucleotidase [Columba livia]223785808202 (6767, 6768)Novel Protein sim. GBank gi|4902699|emb|CAB42442.1| - (AL049784)UNCLASSIFIED1014, 1020, 1035hypothetical protein [Homo sapiens]223883001442 (1359, 1360)Novel Protein sim. GBank gi|4902730|emb|CAB43533.1| - (AJ238889)UNCLASSIFIED1050multidrug resistance-associated protein 7 [Homo sapiens]22398519496 (6729, 6730)Novel Protein sim. GBank gi|4929538|gb|AAD34029.1|AF15136 -UNCLASSIFIED1003(AF151367) Olg-1 bHLH protein [Rattus norvegicus]224030381809 (2303, 2304)Novel Protein sim. GBank gi|4929759|gb|AAD34140.1|AF15190 -UNCLASSIFIED1020AF151903) CGI-145 protein [Homo sapiens]224178523463 (6759, 6760)Novel Protein sim. GBank gi|4981756|gb|AAD36279.1|AE00177 -UNCLASSIFIED1006(AE001777) maltose ABC transporter, periplasmic maltose-binding protein[Thermotoga maritima]224213519504 (4619, 4620)Novel Protein sim. GBank gi|5002553|gb|AAD37457.1| - (AF074603)UNCLASSIFIED1022NonF [Streptomyces griseus subsp. griseus]224387115363 (5095, 5096)Novel Protein sim. GBank gi|5006424|gb|AAD37493.1|AF10916 -UNCLASSIFIED1016(AF109162) HmuT precursor [Corynebacterium diphtheriae]224420612645 (475, 476)Novel Protein sim. GBank gi|5019354|emb|CAB44407.1| - (AL078610)UNCLASSIFIED1020putative substrate-binding periplasmic transport protein [Streptomycescoelicolor]224517900660 (3663, 3664)Novel Protein sim. GBank gi|5031665|ref|NP_005500.1|pDMXL - Dmx-like 1UNCLASSIFIED1036224620467921 (473, 474)Novel Protein sim. GBank gi|5042280|emb|CAB44534.1| - (AL078618)UNCLASSIFIED1008putative electron transfer oxidoreductase [Streptomyces coelicolor]224732152796 (1437, 1438)Novel Protein sim. GBank gi|5107182|gb|AAD40003.1|AF15009 -UNCLASSIFIED1036(AF150097) small zinc finger-like protein [Emericella nidulans]224829272255 (5925, 5926)Novel Protein sim. GBank gi|515507 (U12027) - Sok1p [SaccharomycesUNCLASSIFIED1003, 1004, 1008, 1022,cerevisiae]1041224981215365 (1861, 1862)Novel Protein sim. GBank gi|520476 (U09129) - Mkt1p [SaccharomycesUNCLASSIFIED1002, 1003, 1004, 1006,cerevisiae]1007, 1008, 1010, 1014,1015, 1020, 1021, 1022,1023, 1024, 1028, 1031,1036, 1041, 1046, 1051225080250296 (521, 522)Novel Protein sim. GBank gi|5257279|dbj|BAA81778.1| - (AP000364)UNCLASSIFIED1004Similar to Transposon MAGGY gag and pol gene homologues. (L35053)[Oryza sativa]225111582392 (6651, 6652)Novel Protein sim. GBank gi|5262203|emb|CAB45800.1| - (AL080252)UNCLASSIFIED1003nodulin-like protein [Arabidopsis thaliana]225237815191 (4347, 4348)Novel Protein sim. GBank gi|5420387|emb|CAB46679.1| - (AJ243459)UNCLASSIFIED1055proteophosphoglycan [Leishmanla major]225380486175 (6683, 6684)Novel Protein sim. GBank gi|5420389|emb|CAB46680.1| - (AJ243460)UNCLASSIFIED1010proteophosphoglycan [Leishmanla major]225416308001 (5335, 5336)Novel Protein sim. GBank gi|548652|sp|Q02722|Q300_MOUSE -UNCLASSIFIED1051PROTEIN Q300225511129191 (5611, 5612)Novel Protein sim. GBank gi|548652|sp|Q02722|Q300_MOUSE -UNCLASSIFIED1020PROTEIN Q300225678790951 (739, 740)Novel Protein sim. GBank gi|549009|sp|P36150|SUMT_YEAST -UNCLASSIFIED1007PROBABLE UROPORPHYRIN-III C-METHYLTRANSFERASE (UROGENIII METHYLASE) (SUMT) (UROPORPHYRINOGEN III METHYLASE)(UROM)225780216185 (437, 438)Novel Protein sim. GBank gi|549614|sp|P36137|YK24_YEAST -UNCLASSIFIED1004, 1006, 1008, 1020,HYPOTHETICAL 51.0 KD PROTEIN IN GAP1-NAP1 INTERGENIC1022, 1031, 1035REGION225829361783 (5205, 5206)Novel Protein sim. GBank gi|549636|sp|P36158|YK58_YEAST -UNCLASSIFIED1007, 1024, 1031HYPOTHETICAL 68.3 KD PROTEIN IN SIS2-MTD1 INTERGENICREGION225980071630 (7307, 7308)Novel Protein sim. GBank gi|549648|sp|P36170|YK82_YEAST -UNCLASSIFIED1004, 1015, 1020HYPOTHETICAL 122.2 KD PROTEIN IN SIR1 3′REGION PRECURSOR226080245834 (85, 86)Novel Protein sim. GBank gi|549679|sp|P35734|YKF2_YEAST -UNCLASSIFIED1031HYPOTHETICAL 32.1 KD PROTEIN IN NUP120-CSE4 INTERGENICREGION226127845802 (6077, 6078)Novel Protein sim. GBank gi|549689|sp|P36088|YKG9_YEAST -UNCLASSIFIED1020, 1031HYPOTHETICAL 19.7 KD PROTEIN IN LHS1-NUP100 INTERGENICREGION22628498866 (3829, 3830)Novel Protein sim. GBank gi|549754|sp|P28273|YKV5_YEAST -UNCLASSIFIED1022HYPOTHETICAL 140.4 KD PROTEIN IN URA1-DOA1 INTERGENICREGION226327210480 (385, 386)Novel Protein sim. GBank gi|549766|sp|P36110|YKZ3_YEAST -UNCLASSIFIED1024HYPOTHETICAL 33.8 KD PROTEIN PRECURSOR IN FOX2-YPT52INTERGENIC REGION226479810937 (5457, 5458)Novel Protein sim. GBank gi|5531272|emb|CAB50897.1| - (AJ243800)UNCLASSIFIED1022WSC4 homologue [Kluyveromyces lactis]226580229396 (6345, 6346)Novel Protein sim. GBank gi|5531366|emb|CAB50998.1| - (AL096852)UNCLASSIFIED1004, 1022hypothetical protein [Streptomyces coelicolor A3(2)]226620396935 (9005, 9006)Novel Protein sim. GBank gi|5639946|gb|AAD45904.1|AF16132 -UNCLASSIFIED1008(AF161328) histidine kinase CstS [Corynebacterium diphtheriae]22675617688 (4701, 4702)Novel Protein sim. GBank gi|5668795|gb|AAD46021.1|AC00751 -UNCLASSIFIED1055(AC007519) EST gb|AA605495 comes from this gene. [Arabidopsisthaliana]226886679196 (4373, 4374)Novel Protein sim. GBank gi|5668814|gb|AAD46040.1|AC00751 -UNCLASSIFIED1005(AC007519) ESTs gb|H36253 and gb|AA04251 come from this gene.[Arabidopsis thaliana]226978903560 (5749, 5750)Novel Protein sim. GBank gi|5669820|gb|AAD46481.1|AF12474 -UNCLASSIFIED1036(AF124741) Toll-like receptor 2 [Mus musculus]227011083976 (5043, 5044)Novel Protein sim. GBank gi|5689405|dbj|BAA82986.1| - (AB028957)UNCLASSIFIED1022KIAA1034 protein [Homo sapiens]227180088527 (5153, 5154)Novel Protein sim. GBank gi|5689948|emb|CAB51985.1| - (AL109663)UNCLASSIFIED1003putative isoleucyl-tRNA synthetase [Streptomyces coelicolor A3(2)]227291232333 (7523, 7524)Novel Protein sim. GBank gi|5712756|gb|AAD47636.1|AF16079 -UNCLASSIFIED1008(AF160798) calcium transporter CaT1 [Rattus norvegicus]227352561548 (535, 536)Novel Protein sim. GBank gi|585529|sp|P38108|MUCB_PSEAE - SIGMAUNCLASSIFIED1002FACTOR ALGU REGULATORY PROTEIN MUCB PRECURSOR227428782494 (2321, 2322)Novel Protein sim. GBank gi|586316|sp|P38300|MBA1_YEAST - MBA1UNCLASSIFIED1020PROTEIN PRECURSOR227580216566 (8765, 8766)Novel Protein sim. GBank gi|586407|sp|P38206|RFT1_YEAST -UNCLASSIFIED1001, 1002, 1003, 1004,NUCLEAR DIVISION RFT1 PROTEIN1006, 1007, 1010, 1015,1020, 1021, 1022, 1024,1028, 1031, 1041227614995550 (4669, 4670)Novel Protein sim. GBank gi|586508|sp|P38242|YBS0_YEAST -UNCLASSIFIED1022HYPOTHETICAL 27.0 KD PROTEIN IN VAL1-HSP26 INTERGENICREGION227780034126 (5179, 5180)Novel Protein sim. GBank gi|586525|sp|P38258|YBU9_YEAST -UNCLASSIFIED1008HYPOTHETICAL 14.8 KD PROTEIN IN VPS15-YMC2 INTERGENICREGION227880083735 (2839, 2840)Novel Protein sim. GBank gi|586543|sp|P38274|YBY3_YEAST -UNCLASSIFIED1006, 1020, 1024HYPOTHETICAL 95.2 KD PROTEIN IN AGP2-CKS1 INTERGENICREGION227927830651 (7939, 7940)Novel Protein sim. GBank gi|586871|sp|P37541|YAAT_BACSU -UNCLASSIFIED1008HYPOTHETICAL 31.2 KD PROTEIN IN XPAC-ABRB INTERGENICREGION228029210919 (3769, 3770)Novel Protein sim. GBank gi|595413 (U11236) - beta COPUNCLASSIFIED1006[Saccharomyces cerevisiae]228179912177 (2231, 2232)Novel Protein sim. Gbank gi|606216 (U18997) - ORF_f176 [EscherichiaUNCLASSIFIED1002coli]228227362875 (7537, 7538)Novel Protein sim. GBank gi|630206|pir||S40970 - hypothetical proteinUNCLASSIFIED1002, 1006, 1015YCR30 - yeast (Saccharomyces cerevisiae)228379582169 (4125, 4126)Novel Protein sim. GBank gi|66457|pir||XYPS7A - site-specific DNA-UNCLASSIFIED1020methyltransferase (adenine-specific) (EC 2.1.1.72) PaeR71 -Pseudomonas aeruginosa plasmid pMG7228420724505 (4505, 4506)Novel Protein sim. GBank gi|699274 (U15183) - ImbE gene productUNCLASSIFIED1004[Mycobacterium leprae]228538861095 (553, 554)Novel Protein sim. GBank gi|728646|emb|CAA88514| - (Z48613) unknownUNCLASSIFIED1024[Saccharomyces cerevisiae]228686690662 (8805, 8806)Novel Protein sim. GBank gi|728831|sp|P39188|ALU1_HUMAN - !!!! ALUUNCLASSIFIED1023SUBFAMILY J WARNING ENTRY !!!!228757458406 (5613, 5614)Novel Protein sim. GBank gi|728835|sp|P39192|ALU5_HUMAN - !!!! ALUUNCLASSIFIED1051SUBFAMILY SC WARNING ENTRY !!!!228865452389 (2579, 2580)Novel Protein sim. GBank gi|728836|sp|P39193|ALU6_HUMAN - !!!! ALUUNCLASSIFIED1014SUBFAMILY SP WARNING ENTRY !!!!228966372202 (5051, 5052)Novel Protein sim. GBank gi|728836|sp|P39193|ALU6_HUMAN - !!!! ALUUNCLASSIFIED1022SUBFAMILY SP WARNING ENTRY !!!!229078938732 (2811, 2812)Novel Protein sim. GBank gi|728837|sp|P39194|ALU7_HUMAN - !!!! ALUUNCLASSIFIED1041SUBFAMILY SQ WARNING ENTRY !!!!229155176697 (3701, 3702)Novel Protein sim. GBank gi|729432|sp|P22140|EPT1_YEAST -UNCLASSIFIED1006ETHANOLAMINEPHOSPHOTRANSFERASE (ETHPT)229228821449 (2599, 2600)Novel Protein sim. GBank gi|729999|sp|Q01159|MCE1_YEAST - MRNAUNCLASSIFIED1006CAPPING ENZYME (MRNA GUANYLYLTRANSFERASE) (GTP-RNAGUANYLYLTRANSFERASE)229379415423 (6293, 6294)Novel Protein sim. GBank gi|730269|sp|P32521|PAN1_YEAST - PAN1UNCLASSIFIED1004PROTEIN229429688622 (235, 236)Novel Protein sim. GBank gi|730428|sp|P40607|PURA_VIBPA -UNCLASSIFIED1014ADENYLOSUCCINATE SYNTHETASE (IMP-ASPARTATE LIGASE)22955961411 (7299, 7300)Novel Protein sim. GBank gi|730742|sp|P38717|SIP3_YEAST - SIP3UNCLASSIFIED1055PROTEIN22969383506 (79, 80)Novel Protein sim. GBank gi|731087|sp|P20703|UVSW_BPT4 - UVSWUNCLASSIFIED1015PROTEIN (DAR PROTEIN)229780021661 (1895, 1896)Novel Protein sim. GBank gi|731302|sp|P27637|YAI4_YEAST -UNCLASSIFIED1003HYPOTHETICAL 78.3 KD PROTEIN IN SEN34-ADE1 INTERGENICREGION229820637641 (3195, 3196)Novel Protein sim. GBank gi|731404|sp|P39996|YEB7_YEAST -UNCLASSIFIED1022HYPOTHETICAL 38.2 KD PROTEIN IN PMP2-VAC8 INTERGENICREGION229979235255 (3927, 3928)Novel Protein sim. GBank gi|731408|sp|P39993|YEC2_YEAST -UNCLASSIFIED1006, 1024HYPOTHETICAL 165.7 KD PROTEIN IN RIP1-URA3 INTERGENICREGION230078386371 (7417, 7418)Novel Protein sim. GBank gi|731417|sp|P39985|YEG5_YEAST -UNCLASSIFIED1024HYPOTHETICAL 115.9 KD PROTEIN IN HAT2-RPL15B INTERGENICREGION230179619700 (4849, 4850)Novel Protein sim. GBank gi|731434|sp|P40008|YEJ4_YEAST -UNCLASSIFIED1015, 1023, 1024HYPOTHETICAL 25.1 KD PROTEIN IN PMI40-PAC2 INTERGENICREGION230280029280 (8015, 8016)Novel Protein sim. GBank gi|731441|sp|P40013|BIM1_YEAST - BIM1UNCLASSIFIED1015, 1020, 1031, 1041PROTEIN230379239198 (3941, 3942)Novel Protein sim. GBank gi|731445|sp|P40017|YEL4_YEAST -UNCLASSIFIED1002, 1015, 1020, 1021HYPOTHETICAL 103.3 KD PROTEIN IN PRO3-GCD11 INTERGENICREGION230481712653 (6439, 6440)Novel Protein sim. GBank gi|731516|sp|P40082|YEW5_YEAST -UNCLASSIFIED1002, 1003, 1004, 1006,HYPOTHETICAL 15.4 KD PROTEIN IN GLC7-GDI1 INTERGENIC1007, 1008, 1020, 1022,REGION1024, 1025, 1041, 1051230578901055 (6311, 6312)Novel Protein sim. GBank gi|731584|sp|P38898|YH17_YEAST -UNCLASSIFIED1036HYPOTHETICAL 17.1 KD PROTEIN IN PUR5 3′REGION230679439568 (7937, 7938)Novel Protein sim. GBank gi|731584|sp|P38898|YH17_YEAST -UNCLASSIFIED1022HYPOTHETICAL 17.1 KD PROTEIN IN PUR5 3′REGION230780215989 (8101, 8102)Novel Protein sim. GBank gi|731584|sp|P38898|YH17_YEAST -UNCLASSIFIED1002, 1003, 1006, 1007,HYPOTHETICAL 17.1 KD PROTEIN IN PUR5 3′REGION1008, 1020, 1022, 1025,1031, 1035, 1036, 1041230894292375 (213, 214)Novel Protein sim. GBank gi|731679|sp|P38800|YHO0_YEAST -UNCLASSIFIED1002HYPOTHETICAL 149.7 KD PROTEIN IN IRE1-KSP1 INTERGENICREGION23098504873 (7399, 7400)Novel Protein sim. GBank gi|731679|sp|P38800|YHO0_YEAST -UNCLASSIFIED1022HYPOTHETICAL 149.7 KD PROTEIN IN IRE1-KSP1 INTERGENICREGION231078970331 (2015, 2016)Novel Protein sim. GBank gi|731701|sp|P38821|YHR3_YEAST -UNCLASSIFIED1006HYPOTHETICAL 54.2 KD PROTEIN IN ERP5-ORC6 INTERGENICREGION231182074896 (1059, 1060)Novel Protein sim. GBank gi|731758|sp|P38875|YHY8_YEAST -UNCLASSIFIED1002, 1004, 1006, 1007,HYPOTHETICAL 67.8 KD PROTEIN IN IKI1-ERG9 INTERGENIC1008, 1014, 1015, 1020,REGION1021, 1022, 1023, 1025,1031, 1041231278713647 (8707, 8708)Novel Protein sim. GBank gi|731784|sp|P40547|YIB7_YEAST -UNCLASSIFIED1002HYPOTHETICAL 105.5 KD PROTEIN IN RPL5A-BAR1 INTERGENICREGION231381339427 (7543, 7544)Novel Protein sim. GBank gi|731790|sp|P40542|YIC5_YEAST -UNCLASSIFIED1004, 1007, 1010, 1015,HYPOTHETICAL 14.1 KD PROTEIN IN IRR1-TIM44 INTERGENIC1020, 1021, 1022, 1031,REGION1035, 1051231479619706 (5249, 5250)Novel Protein sim. GBank gi|731879|sp|P40461|YIO1_YEAST -UNCLASSIFIED1023HYPOTHETICAL 14.4 KD PROTEIN IN CCT2-AXL2 INTERGENICREGION231557298970 (5963, 5964)Novel Protein sim. GBank gi|731888|sp|P40450|YIP9_YEAST -UNCLASSIFIED1020, 1022HYPOTHETICAL 156.9 KD PROTEIN IN FOX3-UBP7 INTERGENICREGION231680075552 (1375, 1376)Novel Protein sim. GBank gi|731920|sp|P40577|YIU5_YEAST -UNCLASSIFIED1002, 1004, 1006, 1015,HYPOTHETICAL 42.8 KD PROTEIN IN DAL81-YVH1 INTERGENIC1020, 1036, 1041REGION231780502238 (1579, 1580)Novel Protein sim. GBank gi|732198|sp|P40168|YNT5_YEAST -UNCLASSIFIED1001, 1002, 1008, 1010,HYPOTHETICAL 26.5 KD PROTEIN IN WHI3-CHS1 INTERGENIC1020, 1021, 1025REGION231879858444 (3581, 3582)Novel Protein sim. GBank gi|732331|sp|P39584|YWBA_BACSU -UNCLASSIFIED1036HYPOTHETICAL 47.6 KD PROTEIN IN EPR-GALK INTERGENICREGION231980059821 (7407, 7408)Novel Protein sim. GBank gi|80631|pir||JS0053 - hypothetical 13.7 KUNCLASSIFIED1006, 1022, 1024protein - Mycobacterium fortuitum plasmid pAL5000232078388279 (1889, 1890)Novel Protein sim. GBank gi|81286|pir||S22697 - extensin - Volvox carteriUNCLASSIFIED1024(fragment)232179442416 (2463, 2464)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1020[Human herpesvirus 6]232221145976 (2919, 2920)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1031[Human herpesvirus 6]232357281574 (3253, 3254)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1031[Human herpesvirus 6]232411614956 (3609, 3610)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1020[Human herpesvirus 6]232580085347 (6203, 6204)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1051[Human herpesvirus 6]232678679959 (6219, 6220)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1015[Human herpesvirus 6]232711695659 (6857, 6858)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1031[Human herpesvirus 6]232866053496 (7265, 7266)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1008[Human herpesvirus 6]232919904337 (7541, 7542)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1022[Human herpesvirus 6]233020449755 (7849, 7850)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1008[Human herpesvirus 6]233119899239 (8111, 8112)Novel Protein sim. GBank gi|854065|emb|CAA58337| - (X83413) U88UNCLASSIFIED1022[Human herpesvirus 6]233286459081 (4421, 4422)Novel Protein sim. GBank gi|894178 (U18919) - unknown [Homo sapiens]UNCLASSIFIED1008, 1031233370445515(4725, 4726)Novel Protein sim. GBank gi|924282 (U12767) - mitogen induced nuclearUNCLASSIFIED1017, 1038orphan receptor [Homo sapiens]233414997852 (2277, 2278)Novel Protein sim. GBank gi|93504|pir||D34768 - ORF4 protein - Orf virusUNCLASSIFIED1001, 1002(strain NZ2)233578939072 (5, 6)UNCLASSIFIED1021233694146943 (9, 10)UNCLASSIFIED1002233710867509 (21, 22)UNCLASSIFIED1031233829442779 (63, 64)UNCLASSIFIED1020233952384145 (69, 70)UNCLASSIFIED1033234080235743 (75, 76)UNCLASSIFIED1000, 1020, 1026234179954971 (81, 82)UNCLASSIFIED1001234278378519 (97, 98)UNCLASSIFIED1024, 1051234379560276 (103, 104)UNCLASSIFIED1035234421435078 (121, 122)UNCLASSIFIED1031234532086152 (147, 148)UNCLASSIFIED1041234680310105 (161, 162)UNCLASSIFIED1004, 1008, 1020, 1021, 1026, 1031234710368084 (167, 168)UNCLASSIFIED1006234846806994 (181, 182)UNCLASSIFIED1038234929695963 (187, 188)UNCLASSIFIED1022235078283646 (191, 192)UNCLASSIFIED1026235152561322 (195, 196)UNCLASSIFIED1002235280023954 (203, 204)UNCLASSIFIED1050235321437085 (205, 206)UNCLASSIFIED1020, 1055235479621320 (207, 208)UNCLASSIFIED1003235586687539 (209, 210)UNCLASSIFIED1005235678735185 (223, 224)UNCLASSIFIED1015, 1020235766407901 (237, 238)UNCLASSIFIED1022235835049780 (245, 246)UNCLASSIFIED1027235966138496 (261, 262)UNCLASSIFIED1003236078734108 (263, 264)UNCLASSIFIED1027236191230317 (269, 270)UNCLASSIFIED1018, 1035236213025189 (283, 284)UNCLASSIFIED1028236312745521 (291, 292)UNCLASSIFIED1028236420438376 (327, 328)UNCLASSIFIED1008236510075364 (353, 354)UNCLASSIFIED1015236656172002 (365, 366)UNCLASSIFIED1043236780502101 (369, 370)UNCLASSIFIED1010236827847542 (393, 394)UNCLASSIFIED1020236978747281 (409, 410)UNCLASSIFIED1020237032311509 (417, 418)UNCLASSIFIED1026237138906497 (419, 420)UNCLASSIFIED1024237291237422 (423, 424)UNCLASSIFIED1006, 1008, 1022, 1023, 1031, 1041237379163357 (439, 440)UNCLASSIFIED1028237420731608 (461, 462)UNCLASSIFIED1031237594843553 (467, 468)UNCLASSIFIED1041237630536390 (477, 478)UNCLASSIFIED1024237757051524 (479, 480)UNCLASSIFIED1046237843336130 (487, 488)UNCLASSIFIED1000237979612139 (489, 490)UNCLASSIFIED1004238011813963 (499, 500)UNCLASSIFIED1003238165686807 (507, 508)UNCLASSIFIED1008, 1021238280054347 (511, 512)UNCLASSIFIED1008238399412314 (523, 524)UNCLASSIFIED1020, 1034238477600695 (527, 528)UNCLASSIFIED1046238565487838 (529, 530)UNCLASSIFIED1021238629021183 (531, 532)UNCLASSIFIED1002238795103944 (533, 534)UNCLASSIFIED1002, 1033, 1038238833763765 (539, 540)UNCLASSIFIED102423896831423 (543, 544)UNCLASSIFIED1020239038399460 (547, 548)UNCLASSIFIED1024239129442480 (569, 570)UNCLASSIFIED1051239216342187 (593, 594)UNCLASSIFIED1020239354540457 (605, 606)UNCLASSIFIED1038239436623048 (633, 634)UNCLASSIFIED1031239591236768 (637, 638)UNCLASSIFIED1014, 104223969893819 (673, 674)UNCLASSIFIED1036239711091334 (701, 702)UNCLASSIFIED1020, 1050239879863683 (705, 706)UNCLASSIFIED1010239952432672 (735, 736)UNCLASSIFIED1026240020608055 (753, 754)UNCLASSIFIED1020240146729292 (757, 758)UNCLASSIFIED1017240278835499 (763, 764)UNCLASSIFIED1007240378968380 (771, 772)UNCLASSIFIED1014, 1051240419436353 (773, 774)UNCLASSIFIED1041240528979370 (797, 798)UNCLASSIFIED1007240681883785 (801, 802)UNCLASSIFIED1020, 1050, 1051240719887611 (815, 816)UNCLASSIFIED1031240850672706 (817, 818)UNCLASSIFIED1033240911692942 (831, 832)UNCLASSIFIED1004241086477740 (847, 848)UNCLASSIFIED1017241147660207 (857, 858)UNCLASSIFIED1026241271808275 (871, 872)UNCLASSIFIED1019, 1035, 1041241365881024 (873, 874)UNCLASSIFIED1051241479631806 (881, 882)UNCLASSIFIED1036241595413187 (897, 898)UNCLASSIFIED1020, 1040241639724529 (907, 908)UNCLASSIFIED1024241723308591 (909, 910)UNCLASSIFIED1050241823308860 (917, 918)UNCLASSIFIED1050241978963308 (923, 924)UNCLASSIFIED1051242090991725 (927, 928)UNCLASSIFIED1018242180187255 (929, 930)UNCLASSIFIED1020, 105524229667021 (937, 938)UNCLASSIFIED1036242378380341 (963, 964)UNCLASSIFIED1006242481941215 (983, 984)UNCLASSIFIED1004, 1010, 1014, 1015242520721514 (1003, 1004)UNCLASSIFIED1004242694143077 (1007, 1008)UNCLASSIFIED1041242791228835 (1021, 1022)UNCLASSIFIED1002242851237185 (1033, 1034)UNCLASSIFIED1033242980178026 (1035, 1036)UNCLASSIFIED1017, 1020, 1022, 1024, 1034243055775842 (1047, 1048)UNCLASSIFIED1039243125143318 (1055, 1056)UNCLASSIFIED1002, 1015243278982582 (1057, 1058)UNCLASSIFIED1014243346849648 (1079, 1080)UNCLASSIFIED1026243430393478 (1089, 1090)UNCLASSIFIED1027243555925156 (1109, 1110)UNCLASSIFIED1019243678899041 (1115, 1116)UNCLASSIFIED1021, 1036243710846436 (1121, 1122)UNCLASSIFIED1015243829019179 (1123, 1124)UNCLASSIFIED1006243978186436 (1133, 1134)UNCLASSIFIED1020, 1053244020294837 (1141, 1142)UNCLASSIFIED1031244112926066 (1143, 1144)UNCLASSIFIED1022244280503910 (1145, 1146)UNCLASSIFIED1010244323297653 (1167, 1168)UNCLASSIFIED1021244480090387 (1177, 1178)UNCLASSIFIED1031244571095137 (1183, 1184)UNCLASSIFIED1026, 1050244655278308 (1187, 1188)UNCLASSIFIED1051244777673620 (1191, 1192)UNCLASSIFIED1002244879201268 (1193, 1194)UNCLASSIFIED1002, 1041, 1051244954531954 (1197, 1198)UNCLASSIFIED1038245055310202 (1199, 1200)UNCLASSIFIED1039245155930627 (1211, 1212)UNCLASSIFIED1038, 1039245279843141 (1225, 1226)UNCLASSIFIED1041245354858768 (1231, 1232)UNCLASSIFIED1017245429001471 (1239, 1240)UNCLASSIFIED1041245578277043 (1249, 1250)UNCLASSIFIED1026245616835059 (1251, 1252)UNCLASSIFIED1021245765327575 (1275, 1276)UNCLASSIFIED1020245887114368 (1279, 1280)UNCLASSIFIED1023245929017861 (1283, 1284)UNCLASSIFIED1041246010360425 (1289, 1290)UNCLASSIFIED1015246117937488 (1299, 1300)UNCLASSIFIED1006246213033655 (1325, 1326)UNCLASSIFIED1028246339723162 (1327, 1328)UNCLASSIFIED1034246478527689 (1333, 1334)UNCLASSIFIED1002246586476709 (1341, 1342)UNCLASSIFIED1026246691238781 (1347, 1348)UNCLASSIFIED1002246732568841 (1351, 1352)UNCLASSIFIED1031246846886543 (1377, 1378)UNCLASSIFIED1034246965694982 (1387, 1388)UNCLASSIFIED1035247065892801 (1405, 1406)UNCLASSIFIED1051247147660384 (1407, 1408)UNCLASSIFIED1026247279816169 (1415, 1416)UNCLASSIFIED1003, 1004247380414675 (1425, 1426)UNCLASSIFIED1004, 1023, 1051247479834138 (1431, 1432)UNCLASSIFIED1006247587914057 (1451, 1452)UNCLASSIFIED1013247611383791 (1455, 1456)UNCLASSIFIED1014247780501670 (1459, 1460)UNCLASSIFIED1010247857057036 (1465, 1466)UNCLASSIFIED1051247978464930 (1473, 1474)UNCLASSIFIED1006, 1015248078994822 (1475, 1476)UNCLASSIFIED1002248177797639 (1481, 1482)UNCLASSIFIED1048248234269843 (1483, 1484)UNCLASSIFIED102424835729122 (1491, 1492)UNCLASSIFIED1055248478916225 (1497, 1498)UNCLASSIFIED1007, 1024, 1036248533763311 (1499, 1500)UNCLASSIFIED1024248611801030 (1521, 1522)UNCLASSIFIED1028248778913158 (1523, 1524)UNCLASSIFIED1041248846671302 (1533, 1534)UNCLASSIFIED1020, 1024248930670018 (1545, 1546)UNCLASSIFIED1024249046763776 (1553, 1554)UNCLASSIFIED1038249148029783 (1569, 1570)UNCLASSIFIED103724928018632 (1577, 1578)UNCLASSIFIED1020249330661464 (1583, 1584)UNCLASSIFIED1020249411394815 (1593, 1594)UNCLASSIFIED1020249527974956 (1599, 1600)UNCLASSIFIED1020249679250367 (1601, 1602)UNCLASSIFIED1006, 1014, 1021, 1035, 1041249727261690 (1607, 1608)UNCLASSIFIED1041249880479789 (1619, 1620)UNCLASSIFIED1010249932444163 (1627, 1628)UNCLASSIFIED1026250080202957 (1629, 1630)UNCLASSIFIED1014250133182220 (1637, 1638)UNCLASSIFIED102425025625873 (1641, 1642)UNCLASSIFIED1055250394852905 (1647, 1648)UNCLASSIFIED1041250465671892 (1651, 1652)UNCLASSIFIED1014250520703567 (1653, 1654)UNCLASSIFIED1008, 1022250620615832 (1659, 1660)UNCLASSIFIED1004250716835986 (1675, 1676)UNCLASSIFIED1036250865672070 (1695, 1696)UNCLASSIFIED1014250965884029 (1731, 1732)UNCLASSIFIED1035251078471966 (1759, 1760)UNCLASSIFIED1024251178676775 (1763, 1764)UNCLASSIFIED1006251278029354 (1773, 1774)UNCLASSIFIED1024251325256400 (1779, 1780)UNCLASSIFIED1006251491012600 (1781, 1782)UNCLASSIFIED1002251549300541 (1783, 1784)UNCLASSIFIED1033251613085578 (1797, 1798)UNCLASSIFIED1025251779401347 (1799, 1800)UNCLASSIFIED1004251814996212 (1811, 1812)UNCLASSIFIED1022251978914607 (1823, 1824)UNCLASSIFIED1036252079551154 (1839, 1840)UNCLASSIFIED1001252116839667 (1843, 1844)UNCLASSIFIED1021252278395601 (1847, 1848)UNCLASSIFIED1027252390935673 (1857, 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8662)UNCLASSIFIED1015323830664656 (8673, 8674)UNCLASSIFIED1020323955778583 (8697, 8698)UNCLASSIFIED1039324057304771 (8699, 8700)UNCLASSIFIED1002, 1004, 1031324130540756 (8719, 8720)UNCLASSIFIED1024324220710306 (8735, 8736)UNCLASSIFIED1020324378788014 (8739, 8740)UNCLASSIFIED1007324479831111 (8741, 8742)UNCLASSIFIED1021324580083760 (8751, 8752)UNCLASSIFIED1001, 1015324678261877 (8755, 8756)UNCLASSIFIED1004324736857037 (8769, 8770)UNCLASSIFIED1014324888068123 (8771, 8772)UNCLASSIFIED1015, 1031324980068172 (8783, 8784)UNCLASSIFIED1020325019879414 (8797, 8798)UNCLASSIFIED1031325178903885 (8801, 8802)UNCLASSIFIED1041325228775733 (8823, 8824)UNCLASSIFIED1041325391228881 (8859, 8860)UNCLASSIFIED1008325433204368 (8863, 8864)UNCLASSIFIED1024325523294321 (8869, 8870)UNCLASSIFIED1021325679854040 (8875, 8876)UNCLASSIFIED1041325728384303 (8887, 8888)UNCLASSIFIED1041325833097932 (8889, 8890)UNCLASSIFIED1010325980307643 (8891, 8892)UNCLASSIFIED1002, 1003, 1004, 1006,1015, 1021, 1025, 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(2739, 2740)UNCLASSIFIED1014365757567671 (2745, 2746)UNCLASSIFIED1021365816836431 (2749, 2750)UNCLASSIFIED1021365980218369 (2765, 2766)UNCLASSIFIED1001, 1020, 1022366037055937 (2767, 2768)UNCLASSIFIED1027366119644342 (2769, 2770)UNCLASSIFIED1031366225339900 (2787, 2788)UNCLASSIFIED1002366378236643 (2789, 2790)UNCLASSIFIED1024366434761626 (2797, 2798)UNCLASSIFIED1027366578678904 (2807, 2808)UNCLASSIFIED1007366620557833 (2809, 2810)UNCLASSIFIED1055366794139859 (2813, 2814)UNCLASSIFIED1041366865486699 (2815, 2816)UNCLASSIFIED1051366980071788 (2819, 2820)UNCLASSIFIED1020367077724257 (2823, 2824)UNCLASSIFIED1051367179635735 (2825, 2826)UNCLASSIFIED1035367255003597 (2827, 2828)UNCLASSIFIED1017367351621004 (2829, 2830)UNCLASSIFIED1033367471033720 (2831, 2832)UNCLASSIFIED1034, 1038367534386965 (2833, 2834)UNCLASSIFIED1024367680032829 (2837, 2838)UNCLASSIFIED1050367779462591 (2851, 2852)UNCLASSIFIED1014, 1031367878185398 (2859, 2860)UNCLASSIFIED1022, 1050367980193829 (2861, 2862)UNCLASSIFIED1031, 1050, 1055368080502697 (2873, 2874)UNCLASSIFIED1003, 1004, 1008, 10101024, 1055368128465931 (2875, 2876)UNCLASSIFIED1002368229965879 (2877, 2878)UNCLASSIFIED1022368327366914 (2881, 2882)UNCLASSIFIED1020368450869757 (2901, 2902)UNCLASSIFIED1033368579555889 (2907, 2908)UNCLASSIFIED1021368679248537 (2909, 2910)UNCLASSIFIED1022368766398017 (2911, 2912)UNCLASSIFIED1007368879640057 (2917, 2918)UNCLASSIFIED1035368954534082 (2923, 2924)UNCLASSIFIED1022, 1038369054526857 (2935, 2936)UNCLASSIFIED1033369121660945 (2939, 2940)UNCLASSIFIED1022369236857751 (2945, 2946)UNCLASSIFIED1014369355389743 (2949, 2950)UNCLASSIFIED1027369446668352 (2953, 2954)UNCLASSIFIED1020369534251001 (2961, 2962)UNCLASSIFIED1024369611703373 (2967, 2968)UNCLASSIFIED1028369746874237 (2973, 2974)UNCLASSIFIED1034369837816708 (2975, 2976)UNCLASSIFIED1055369935907210 (2981, 2982)UNCLASSIFIED1037370078745265 (2983, 2984)UNCLASSIFIED1002, 1033370179858904 (3007, 3008)UNCLASSIFIED1038370278085425 (3009, 3010)UNCLASSIFIED1047370378206639 (3017, 3018)UNCLASSIFIED1014370465874974 (3021, 3022)UNCLASSIFIED1051370528471465 (3023, 3024)UNCLASSIFIED1006370678746666 (3037, 3038)UNCLASSIFIED1006370746889682 (3047, 3048)UNCLASSIFIED1034370878948378 (3057, 3058)UNCLASSIFIED1036370966396594 (3065, 3066)UNCLASSIFIED1006, 1031371078196786 (3067, 3068)UNCLASSIFIED1031371116383784 (3071, 3072)UNCLASSIFIED1002371247657734 (3077, 3078)UNCLASSIFIED1026371379447045 (3105, 3106)UNCLASSIFIED1020371433183407 (3109, 3110)UNCLASSIFIED1024371586664985 (3115, 3116)UNCLASSIFIED1017, 1034371610301850 (3119, 3120)UNCLASSIFIED1023371779248020 (3125, 3126)UNCLASSIFIED1022371835933247 (3127, 3128)UNCLASSIFIED1050371999140168 (3141, 3142)UNCLASSIFIED1007, 1014, 1017, 1022, 1051372011694990 (3145, 3146)UNCLASSIFIED1035372133694297 (3147, 3148)UNCLASSIFIED1024372278953221 (3151, 3152)UNCLASSIFIED1014, 1027372394326081 (3155, 3156)UNCLASSIFIED1041372446742595 (3157, 3158)UNCLASSIFIED1030372516426623 (3159, 3160)UNCLASSIFIED1051372690993570 (3161, 3162)UNCLASSIFIED1018372730661131 (3169, 3170)UNCLASSIFIED1020372811175015 (3175, 3176)UNCLASSIFIED1003372919885104 (3187, 3188)UNCLASSIFIED1001373029694374 (3199, 3200)UNCLASSIFIED1024373124143481 (3201, 3202)UNCLASSIFIED1002373271101817 (3205, 3206)UNCLASSIFIED1022373365656895 (3215, 3216)UNCLASSIFIED1035373418436662 (3217, 3218)UNCLASSIFIED1031373541672398 (3239, 3240)UNCLASSIFIED1034373678052422 (3241, 3242)UNCLASSIFIED1034373780183969 (3243, 3244)UNCLASSIFIED1019, 1020373820476882 (3245, 3246)UNCLASSIFIED1020373917895353 (3247, 3248)UNCLASSIFIED1002374038905365 (3261, 3262)UNCLASSIFIED1014374186685857 (3269, 3270)UNCLASSIFIED1026374265468591 (3283, 3284)UNCLASSIFIED1051374325131527 (3289, 3290)UNCLASSIFIED1002374410094373 (3291, 3292)UNCLASSIFIED1015374530505782 (3305, 3306)UNCLASSIFIED1006374627836190 (3311, 3312)UNCLASSIFIED1004374780423912 (3319, 3320)UNCLASSIFIED1001, 1002, 1003, 1004,1020, 1021, 1023, 1031,1036, 1041374810249295 (3333, 3334)UNCLASSIFIED1035374978680744 (3337, 3338)UNCLASSIFIED1002375035103649 (3343, 3344)UNCLASSIFIED1031375134899964 (3353, 3354)UNCLASSIFIED1051375278360120 (3371, 3372)UNCLASSIFIED1006, 1024375330632411 (3379, 3380) UNCLASSIFIED1006375435024176 (3391, 3392)UNCLASSIFIED1051375516457561 (3405, 3406)UNCLASSIFIED1035375665645505 (3407, 3408)UNCLASSIFIED1038375779798841 (3415, 3416)UNCLASSIFIED1002, 1006, 1021, 1036375880203744 (3443, 3444)UNCLASSIFIED1014375971750789 (3447, 3448)UNCLASSIFIED1002376077802440 (3467, 3468)UNCLASSIFIED102237618359544 (3469, 3470)UNCLASSIFIED1003376210225872 (3493, 3494)UNCLASSIFIED1036376346894999 (3495, 3496)UNCLASSIFIED1039376411389279 (3503, 3504)UNCLASSIFIED1022376571045975 (3507, 3508)UNCLASSIFIED1034376680087698 (3509, 3510)UNCLASSIFIED1008, 1051376779579134 (3511, 3512)UNCLASSIFIED1004376879919013 (3515, 3516)UNCLASSIFIED1021, 1050376980066001 (3523, 3524)UNCLASSIFIED1004, 1008377029646977 (3525, 3526)UNCLASSIFIED1022377133188974 (3533, 3534)UNCLASSIFIED1024377235009714 (3543, 3544)UNCLASSIFIED1031377320467302 (3547, 3548)UNCLASSIFIED1008377417931649 (3555, 3556)UNCLASSIFIED1002377527361421 (3567, 3568)UNCLASSIFIED1021377610299797 (3577, 3578)UNCLASSIFIED1035377779557652 (3583, 3584)UNCLASSIFIED1035377830169120 (3585, 3586)UNCLASSIFIED1035377978374939 (3589, 3590)UNCLASSIFIED1002, 1015, 1021378030787151 (3593, 3594)UNCLASSIFIED1024378178804617 (3595, 3596)UNCLASSIFIED1027378266367508 (3603, 3604)UNCLASSIFIED1050378378373112 (3615, 3616)UNCLASSIFIED1015, 1022378411413985 (3621, 3622)UNCLASSIFIED1015378595009017 (3623, 3624)UNCLASSIFIED1002378620723468 (3635, 3636)UNCLASSIFIED1022378779816682 (3637, 3638)UNCLASSIFIED1015, 1035378851577874 (3645, 3646)UNCLASSIFIED1033378910846444 (3647, 3648)UNCLASSIFIED1001379025260882 (3649, 3650)UNCLASSIFIED1002379128389918 (3651, 3652)UNCLASSIFIED1051379279318955 (3667, 3668)UNCLASSIFIED1031379316283681 (3671, 3672)UNCLASSIFIED1022379494138495 (3689, 3690)UNCLASSIFIED1002379541672409 (3691, 3692)UNCLASSIFIED1034379678836180 (3703, 3704)UNCLASSIFIED1006379765659899 (3711, 3712)UNCLASSIFIED1051379834112159 (3721, 3722)UNCLASSIFIED1026379978956714 (3739, 3740)UNCLASSIFIED1036380027842055 (3743, 3744)UNCLASSIFIED1020380133187894 (3745, 3746)UNCLASSIFIED1024380228001618 (3755, 3756)UNCLASSIFIED1051380327967726 (3759, 3760)UNCLASSIFIED1050380485546206 (3765, 3766)UNCLASSIFIED1014, 1017, 1051380565475958 (3771, 3772)UNCLASSIFIED1035380657118245 (3779, 3780)UNCLASSIFIED1051380786474081 (3783, 3784)UNCLASSIFIED1051380811618663 (3787, 3788)UNCLASSIFIED1022380970118997 (3789, 3790)UNCLASSIFIED1007, 1014, 1041, 1051381027980874 (3795, 3796)UNCLASSIFIED1004381179242234 (3811, 3812)UNCLASSIFIED1021381279959340 (3817, 3818)UNCLASSIFIED1015381327824068 (3827, 3828)UNCLASSIFIED1022381428822150 (3837, 3838)UNCLASSIFIED1015, 1031381556660811 (3845, 3846)UNCLASSIFIED1039381665661203 (3849, 3850)UNCLASSIFIED1038381778490606 (3853, 3854)UNCLASSIFIED1027381846849024 (3855, 3856)UNCLASSIFIED1034381933202221 (3875, 3876)UNCLASSIFIED1024382078678308 (3887, 3888)UNCLASSIFIED1020382178725201 (3889, 3890)UNCLASSIFIED1006382270624070 (3907, 3908)UNCLASSIFIED1033382365643267 (3911, 3912)UNCLASSIFIED1014382465469565 (3933, 3934)UNCLASSIFIED1035382565655468 (3935, 3936)UNCLASSIFIED1022382678914614 (3943, 3944)UNCLASSIFIED1051382765896155 (3951, 3952)UNCLASSIFIED1006, 1051382846772096 (3953, 3954)UNCLASSIFIED1031, 1034382918596560 (3965, 3966)UNCLASSIFIED1035383099389270 (3971, 3972)UNCLASSIFIED1008383128348241 (3973, 3974)UNCLASSIFIED1022383265891364 (3977, 3978)UNCLASSIFIED1051383330152221 (4001, 4002)UNCLASSIFIED1035383478492065 (4007, 4008)UNCLASSIFIED1027383579642523 (4029, 4030)UNCLASSIFIED1035383679861856 (4031, 4032)UNCLASSIFIED1035383779871329 (4033, 4034)UNCLASSIFIED1036, 1041383887890504 (4035, 4036)UNCLASSIFIED1013383925242118 (4057, 4058)UNCLASSIFIED1041384027968176 (4061, 4062)UNCLASSIFIED1004384178784754 (4075, 4076)UNCLASSIFIED1007384279408074 (4079, 4080)UNCLASSIFIED1014384356333036 (4081, 4082)UNCLASSIFIED1043384494239501 (4087, 4088)UNCLASSIFIED1008, 1022384580026097 (4095, 4096)UNCLASSIFIED1022384687456342 (4137, 4138)UNCLASSIFIED1023384730198108 (4155, 4156)UNCLASSIFIED1024384820710997 (4159, 4160)UNCLASSIFIED1004384955402030 (4165, 4166)UNCLASSIFIED1017385065465045 (4171, 4172)UNCLASSIFIED1035385157458168 (4185, 4186)UNCLASSIFIED1051385278728168 (4193, 4194)UNCLASSIFIED1015, 1017, 1019, 1022,1031, 1041, 1051385313000688 (4207, 4208)UNCLASSIFIED1028385480236710 (4211, 4212)UNCLASSIFIED1004, 1006385517710366 (4221, 4222)UNCLASSIFIED1041385620700094 (4223, 4224)UNCLASSIFIED1031385780434504 (4227, 4228) UNCLASSIFIED1001, 1002, 1015, 1020,1035385832711850 (4229, 4230)UNCLASSIFIED1026385986672681 (4231, 4232)UNCLASSIFIED1045386016842159 (4247, 4248)UNCLASSIFIED1002386182391545 (4251, 4252)UNCLASSIFIED1001, 1015, 1036386246907814 (4257, 4258)UNCLASSIFIED1051386316543537 (4259, 4260)UNCLASSIFIED1041386433694101 (4265, 4266)UNCLASSIFIED1024386565668963 (4267, 4268)UNCLASSIFIED1014386635018781 (4271, 4272)UNCLASSIFIED1031386751234646 (4273, 4274)UNCLASSIFIED1033386878732638 (4275, 4276)UNCLASSIFIED1024386920449012 (4285, 4286)UNCLASSIFIED1020387052563141 (4291, 4292)UNCLASSIFIED1020387157764140 (4299, 4300)UNCLASSIFIED1048387230817381 (4303, 4304)UNCLASSIFIED1041387387114380 (4311, 4312)UNCLASSIFIED1023387429686126 (4313, 4314)UNCLASSIFIED1035387534098920 (4315, 4316)UNCLASSIFIED1022387643152714 (4319, 4320)UNCLASSIFIED1001387765883519 (4323, 4324)UNCLASSIFIED1051387816836263 (4335, 4336)UNCLASSIFIED1021387986475758 (4341, 4342)UNCLASSIFIED1045388042943293 (4349, 4350)UNCLASSIFIED1001388165882415 (4353, 4354)UNCLASSIFIED1051388230420553 (4355, 4356)UNCLASSIFIED1022, 1051388329347345 (4365, 4366)UNCLASSIFIED1006388486679852 (4381, 4382)UNCLASSIFIED1005388517110686 (4391, 4392)UNCLASSIFIED1027388611103257 (4397, 4398)UNCLASSIFIED1020388777544403 (4399, 4400)UNCLASSIFIED1014388810173631 (4439, 4440)UNCLASSIFIED1021388979847279 (4445, 4446)UNCLASSIFIED1036389020621925 (4447, 4448)UNCLASSIFIED1003389166442017 (4449, 4450)UNCLASSIFIED1004, 1010, 1020, 1021,1025, 1028, 1031389225312469 (4459, 4460)UNCLASSIFIED1020389379599936 (4469, 4470)UNCLASSIFIED1002389465695299 (4477, 4478)UNCLASSIFIED1035389578741111 (4479, 4480)UNCLASSIFIED1015389691231091 (4483, 4484)UNCLASSIFIED1008389765701383 (4485, 4486)UNCLASSIFIED1008389811690101 (4487, 4488)UNCLASSIFIED1028389928800584 (4489, 4490)UNCLASSIFIED1015390011686830 (4503, 4504)UNCLASSIFIED1028390154858787 (4513, 4514)UNCLASSIFIED1017390278257578 (4521, 4522)UNCLASSIFIED1024390377897196 (4525, 4526)UNCLASSIFIED1033390413031713 (4527, 4528)UNCLASSIFIED1003390587890824 (4531, 4532)UNCLASSIFIED1013390679636785 (4535, 4536)UNCLASSIFIED1021390715028427 (4541, 4542)UNCLASSIFIED1051390865466325 (4547, 4548)UNCLASSIFIED1051390942723088 (4551, 4552)UNCLASSIFIED1000391010017074 (4555, 4556)UNCLASSIFIED1021391171808623 (4557, 4558)UNCLASSIFIED1007, 1020391266464838 (4569, 4570)UNCLASSIFIED1054391319741094 (4575, 4576)UNCLASSIFIED102339143323644 (4593, 4594)UNCLASSIFIED1035391579876205 (4595, 4596)UNCLASSIFIED1015391665700316 (4609, 4610)UNCLASSIFIED1035391729469285 (4675, 4676)UNCLASSIFIED1035391828955148 (4697, 4698)UNCLASSIFIED1024391979966209 (4705, 4706)UNCLASSIFIED1002, 1023392079462800 (4709, 4710)UNCLASSIFIED1031392110873043 (4713, 4714)UNCLASSIFIED102039229858716 (4715, 4716)UNCLASSIFIED1036392385816681 (4721, 4722)UNCLASSIFIED1017392480066607 (4723, 4724)UNCLASSIFIED1020392586476727 (4729, 4730)UNCLASSIFIED1026392690990455 (4733, 4734)UNCLASSIFIED1006, 1018, 1019, 1051,1055392798421661 (4737, 4738)UNCLASSIFIED1000, 1002, 1006, 1008,1015, 1019, 1031, 1038392828781284 (4753, 4754)UNCLASSIFIED1024392938883229 (4763, 4764)UNCLASSIFIED1047, 1051393078511398 (4775, 4776)UNCLASSIFIED1038, 1051393179604903 (4783, 4784)UNCLASSIFIED1003393235816017 (4791, 4792)UNCLASSIFIED1024393351617480 (4793, 4794)UNCLASSIFIED1033393477717021 (4801, 4802)UNCLASSIFIED1014393540382597 (4823, 4824)UNCLASSIFIED1034393678377539 (4825, 4826)UNCLASSIFIED1041393746774743 (4829, 4830)UNCLASSIFIED1039393865701385 (4833, 4834)UNCLASSIFIED1035393911795701 (4835, 4836)UNCLASSIFIED1035394016312090 (4837, 4838)UNCLASSIFIED105139419939777 (4845, 4846)UNCLASSIFIED1041394279823597 (4857, 4858)UNCLASSIFIED1017, 1021, 1041, 1051394378049817 (4861, 4862)UNCLASSIFIED1024394433201780 (4863, 4864)UNCLASSIFIED1024394510840687 (4891, 4892)UNCLASSIFIED1015394627931141 (4895, 4896)UNCLASSIFIED1020394778527897 (4903, 4904)UNCLASSIFIED1027394878268274 (4915, 4916)UNCLASSIFIED1024394946894060 (4919, 4920)UNCLASSIFIED1031395079954324 (4921, 4922)UNCLASSIFIED1023395165979550 (4927, 4928)UNCLASSIFIED1051395280079455 (4931, 4932)UNCLASSIFIED1031395354534093 (4937, 4938)UNCLASSIFIED1038395420728393 (4939, 4940)UNCLASSIFIED1004395555506019 (4941, 4942)UNCLASSIFIED1019395678523668 (4943, 4944)UNCLASSIFIED1006, 1026395771104557 (4947, 4948)UNCLASSIFIED1021395820197541 (4955, 4956)UNCLASSIFIED1022395956334712 (4959, 4960)UNCLASSIFIED1046396055183444 (4977, 4978)UNCLASSIFIED1017396170450451 (4979, 4980)UNCLASSIFIED1017396266769028 (4985, 4986)UNCLASSIFIED1046396378235359 (4993, 4994)UNCLASSIFIED1024396416412431 (4995, 4996)UNCLASSIFIED1002396528394457 (4997, 4998)UNCLASSIFIED1021396630383089 (5013, 5014)UNCLASSIFIED1014396766393613 (5025, 5026)UNCLASSIFIED1035396834387080 (5029, 5030)UNCLASSIFIED1024396924121590 (5039, 5040)UNCLASSIFIED1026397032433483 (5041, 5042)UNCLASSIFIED1010397194141717 (5045, 5046)UNCLASSIFIED1041397225306744 (5055, 5056)UNCLASSIFIED1020397388476858 (5057, 5058)UNCLASSIFIED1026397478944624 (5059, 5060) UNCLASSIFIED1014397565670632 (5061, 5062)UNCLASSIFIED1026397613050562 (5073, 5074)UNCLASSIFIED1022397727844300 (5085, 5086)UNCLASSIFIED1020397839601978 (5089, 5090)UNCLASSIFIED1021397965653559 (5093, 5094)UNCLASSIFIED1035398080089370 (5099, 5100)UNCLASSIFIED1003, 1022, 1024398154534284 (5101, 5102)UNCLASSIFIED1038398233184707 (5105, 5106) UNCLASSIFIED1024398379634511 (5107, 5108)UNCLASSIFIED1035398486472313 (5113, 5114)UNCLASSIFIED1017398520439571 (5121, 5122)UNCLASSIFIED1020398633202592 (5133, 5134)UNCLASSIFIED1024398779478434 (5135, 5136)UNCLASSIFIED1023398879576204 (5141, 5142)UNCLASSIFIED1001, 1014, 1031, 1047,1050398913522872 (5143, 5144)UNCLASSIFIED1001399066049527 (5147, 5148)UNCLASSIFIED1005399146848378 (5151, 5152)UNCLASSIFIED1026399278956043 (5155, 5156)UNCLASSIFIED1006399378305060 (5159, 5160)UNCLASSIFIED1024399478380191 (5163, 5164)UNCLASSIFIED1024, 1050399533189038 (5169, 5170)UNCLASSIFIED1024399679573868 (5185, 5186)UNCLASSIFIED1001399778317811 (5187, 5188)UNCLASSIFIED1011399878505531 (5191, 5192)UNCLASSIFIED1020399911798237 (5201, 5202)UNCLASSIFIED1031400035128761 (5207, 5208)UNCLASSIFIED1010400121433789 (5211, 5212)UNCLASSIFIED1020400225177609 (5213, 5214)UNCLASSIFIED1003, 1004, 1021, 1031400352563366 (5219, 5220)UNCLASSIFIED1002400430620920 (5227, 5228)UNCLASSIFIED1020400578825645 (5245, 5246)UNCLASSIFIED1027400680421656 (5255, 5256)UNCLASSIFIED1001, 1003, 1006, 1020,1023, 1041400755187397 (5257, 5258)UNCLASSIFIED1017400877656677 (5271, 5272)UNCLASSIFIED1014, 1022400965691308 (5291, 5292)UNCLASSIFIED1046401027982125 (5293, 5294)UNCLASSIFIED1050401154695036 (5295, 5296)UNCLASSIFIED1038401279461884 (5313, 5314)UNCLASSIFIED1031401380389472 (5317, 5318)UNCLASSIFIED1020, 1024, 1026401430251469 (5319, 5320)UNCLASSIFIED1041401513513007 (5329, 5330)UNCLASSIFIED1021, 1022401656149302 (5333, 5334)UNCLASSIFIED1006401778095920 (5355, 5356)UNCLASSIFIED1019401846682434 (5365, 5366)UNCLASSIFIED1026401946690837 (5375, 5376) UNCLASSIFIED1030402012992450 (5377, 5378)UNCLASSIFIED1022402187466194 (5383, 5384)UNCLASSIFIED1016402239719598 (5387, 5388)UNCLASSIFIED1031402355310055 (5389, 5390)UNCLASSIFIED1039402433265615 (5393, 5394)UNCLASSIFIED1000402565885491 (5401, 5402)UNCLASSIFIED1028402632125784 (5421, 5422)UNCLASSIFIED1004402752376941 (5425, 5426)UNCLASSIFIED1033402833203507 (5431, 5432)UNCLASSIFIED1024402978978467 (5435, 5436)UNCLASSIFIED1020, 1027, 1051403011071319 (5443, 5444)UNCLASSIFIED1004403165890822 (5451, 5452)UNCLASSIFIED1035403229228414 (5469, 5470)UNCLASSIFIED1027403379584929 (5483, 5484)UNCLASSIFIED1051403466173703 (5497, 5498)UNCLASSIFIED1014403565674710 (5509, 5510)UNCLASSIFIED1014403685800185 (5513, 5514)UNCLASSIFIED1023403778670351 (5535, 5536)UNCLASSIFIED1024403810847716 (5539, 5540)UNCLASSIFIED1001403935144239 (5541, 5542)UNCLASSIFIED104740406331065 (5581, 5562)UNCLASSIFIED1055404130235029 (5563, 5564)UNCLASSIFIED1026404294147686 (5569, 5570)UNCLASSIFIED1041404380225256 (5573, 5574)UNCLASSIFIED1020404494239307 (5581, 5582)UNCLASSIFIED1023404558213698 (5599, 5600)UNCLASSIFIED1020404665987181 (5601, 5602)UNCLASSIFIED1051404720554815 (5603, 5604)UNCLASSIFIED1050404880080228 (5619, 5620)UNCLASSIFIED1020404965655872 (5625, 5626)UNCLASSIFIED1051405078046862 (5631, 5632)UNCLASSIFIED1024405119740737 (5637, 5638)UNCLASSIFIED1002405279265109 (5643, 5644)UNCLASSIFIED1005405325136397 (5647, 5648)UNCLASSIFIED1002405465458428 (5657, 5658)UNCLASSIFIED1051405578303052 (5665, 5666)UNCLASSIFIED1024405666139535 (5669, 5670)UNCLASSIFIED1003405711615647 (5673, 5674)UNCLASSIFIED1004405878487206 (5675, 5676)UNCLASSIFIED1024405913032587 (5677, 5678)UNCLASSIFIED1022406078390333 (5683, 5684)UNCLASSIFIED1020406154540020 (5699, 5700)UNCLASSIFIED1038406294234536 (5703, 5704)UNCLASSIFIED1002406314996436 (5711, 5712)UNCLASSIFIED1022406495420776 (5723, 5724)UNCLASSIFIED1051406557056645 (5727, 5728)UNCLASSIFIED1051406630817392 (5735, 5736)UNCLASSIFIED1041406794747080 (5739, 5740)UNCLASSIFIED1002, 1007, 1020, 1031,1034, 1035, 1041406878254479 (5741, 5742)UNCLASSIFIED1024406912806365 (5753, 5754)UNCLASSIFIED1003407028307526 (5757, 5758)UNCLASSIFIED1051407166556800 (5771, 5772)UNCLASSIFIED1007407220288127 (5775, 5776)UNCLASSIFIED1031407378470896 (5777, 5778)UNCLASSIFIED1050407491220019 (5785, 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1022, 1025, 1031439835070432 (8139, 8140)UNCLASSIFIED1027439966465809 (8143, 8144)UNCLASSIFIED1022440027962501 (8145, 8146)UNCLASSIFIED1020440110302827 (8147, 8148)UNCLASSIFIED1036440255004194 (8149, 8150)UNCLASSIFIED1017440380254666 (8161, 8162)UNCLASSIFIED1003440478952408 (8167, 8168)UNCLASSIFIED1002440519510208 (8169, 8170)UNCLASSIFIED1031440678462199 (8185, 8186)UNCLASSIFIED1002, 1051440778188298 (8187, 8188)UNCLASSIFIED1026440880104525 (8191, 8192)UNCLASSIFIED1002, 1004, 1022, 1051440979835167 (8209, 8210)UNCLASSIFIED1006441094326068 (8213, 8214)UNCLASSIFIED1041441125140679 (8223, 8224)UNCLASSIFIED1002441278924391 (8225, 8226)UNCLASSIFIED1000, 1024, 1026, 1051441378674480 (8229, 8230)UNCLASSIFIED1007, 1051441418520847 (8251, 8252)UNCLASSIFIED1015441579641282 (8253, 8254)UNCLASSIFIED1035441610872492 (8255, 8256)UNCLASSIFIED1020441746788868 (8263, 8264)UNCLASSIFIED1037441820456670 (8267, 8268)UNCLASSIFIED1008441966437272 (8271, 8272)UNCLASSIFIED1022442046683894 (8275, 8276)UNCLASSIFIED1020442182125380 (8279, 8280)UNCLASSIFIED1014442280054024 (8283, 8284)UNCLASSIFIED1003442391255717 (8285, 8286)UNCLASSIFIED1002442479448440 (8289, 8290)UNCLASSIFIED1003442599517906 (8295, 8296)UNCLASSIFIED1001, 1008, 1020, 1022,1036, 1041, 1055442680082084 (8299, 8300)UNCLASSIFIED1020,1022, 1026, 1028,1031, 1035442754528786 (8305, 8306)UNCLASSIFIED1038442816333379 (8313, 8314)UNCLASSIFIED1004442977894027 (8319, 8320)UNCLASSIFIED1019, 1033443094233812(8321, 8322)UNCLASSIFIED1002, 1015, 1023, 1035,1050, 1051443155183467 (8337, 8338)UNCLASSIFIED1017443285540000 (8341, 8342)UNCLASSIFIED1035443387455204 (8355, 8356)UNCLASSIFIED1023443410853661 (8369, 8370)UNCLASSIFIED1015443578378831 (8373, 8374)UNCLASSIFIED1041443679763791 (8375, 8376)UNCLASSIFIED1020443778914945 (8389, 8390)UNCLASSIFIED1036443829897195 (8403, 8404)UNCLASSIFIED1022443927839395 (8411, 8412)UNCLASSIFIED1020444055929020 (8413, 8414)UNCLASSIFIED1019444119887773 (8419, 8420)UNCLASSIFIED1031444280399986 (8429, 8430)UNCLASSIFIED1006, 1023, 1026444378374679 (8431, 8432)UNCLASSIFIED1006, 1024444410104463 (8437, 8438)UNCLASSIFIED1035444527977235 (8439, 8440)UNCLASSIFIED1004444679763608 (8447, 8448)UNCLASSIFIED1021444771059237 (8455, 8456)UNCLASSIFIED1022444871845869 (8461, 8462)UNCLASSIFIED1027, 1033444934761080 (8469, 8470)UNCLASSIFIED1027445078946789 (8487, 8488)UNCLASSIFIED1019, 1033, 1038, 1051445133101646 (8491, 8492)UNCLASSIFIED1024445230394512 (8495, 8496)UNCLASSIFIED1035445380200907 (8497, 8498)UNCLASSIFIED1020, 1022445477515115 (8499, 8500)UNCLASSIFIED1002445577881555 (8503, 8504)UNCLASSIFIED1019445679778294 (8505, 8506)UNCLASSIFIED1015445739734743 (8515, 8516)UNCLASSIFIED1024445820281464 (8517, 8518)UNCLASSIFIED1031445980021097 (8521, 8522)UNCLASSIFIED1004446050401417 (8523, 8524)UNCLASSIFIED1033446155506630 (8527, 8528)UNCLASSIFIED1019, 102444626598409 (8535, 8536)UNCLASSIFIED1020446310080426 (8543, 8544)UNCLASSIFIED1015446480424139 (8549, 8550)UNCLASSIFIED1003, 1008, 1023446578058919 (8555, 8556)UNCLASSIFIED1022446637026708 (8557, 8558)UNCLASSIFIED1035, 1041446766049540 (8565, 8566)UNCLASSIFIED1005446866139409 (8571, 8572)UNCLASSIFIED1003, 1010, 1020446965891380 (8579, 8580)UNCLASSIFIED1051447065981380 (8583, 8584)UNCLASSIFIED1051447178948740 (8591, 8592)UNCLASSIFIED1001, 1015, 1031447219905899 (8599, 8600)UNCLASSIFIED1008447387115127 (8603, 8604)UNCLASSIFIED1023447432296073 (8611, 8612)UNCLASSIFIED1000447525183594 (8613, 8614)UNCLASSIFIED1002447617903334 (8619, 8620)UNCLASSIFIED1021447728459834 (8631, 8632)UNCLASSIFIED1002447842942377 (8633, 8634)UNCLASSIFIED1000447924133419 (8635, 8636)UNCLASSIFIED1002448078788013 (8647, 8648)UNCLASSIFIED1002, 1006448135073151 (8651, 8652)UNCLASSIFIED1047448234697225 (8659, 8660)UNCLASSIFIED1022448311076810 (8663, 8664)UNCLASSIFIED1008448427842778 (8667, 8668)UNCLASSIFIED1003, 1008448566437464 (8669, 8670)UNCLASSIFIED1022448680206883 (8681, 8682)UNCLASSIFIED1031448779114654 (8689, 8690)UNCLASSIFIED1002, 1006, 1007, 1014,1015, 1020, 1021, 1024,1034, 1036, 1041448830256277 (8701, 8702)UNCLASSIFIED1041448978377302 (8713, 8714)UNCLASSIFIED1024449086476874 (8723, 8724)UNCLASSIFIED1026449178387102 (8725, 8726)UNCLASSIFIED1024449287456737 (8727, 8728)UNCLASSIFIED1023449378913039 (8731, 8732)UNCLASSIFIED1027, 1041449421430756 (8737, 8738)UNCLASSIFIED1003449587453107 (8743, 8744)UNCLASSIFIED1023449629006178 (8745, 8746)UNCLASSIFIED1041449757057267 (8749, 8750)UNCLASSIFIED1051449820754821 (8777, 8778)UNCLASSIFIED1050449934411796 (8795, 8796)UNCLASSIFIED1022450079190982 (8815, 8816)UNCLASSIFIED1022, 1035450180026765 (8825, 8826)UNCLASSIFIED1003450234885768 (8833, 8834)UNCLASSIFIED1014450388097866 (8837, 8838)UNCLASSIFIED1016450432712852 (8839, 8840)UNCLASSIFIED1026450580412124 (8843, 8844)UNCLASSIFIED102645066512390 (8845, 8846)UNCLASSIFIED1020450788464789 (8849, 8850)UNCLASSIFIED1026, 1031450865881056 (8861, 8862)UNCLASSIFIED1051450979111174 (8865, 8866)UNCLASSIFIED1024, 1041451078432343 (8867, 8868)UNCLASSIFIED1031, 1051451165468389 (8871, 8872)UNCLASSIFIED1051451265648374 (8879, 8880)UNCLASSIFIED1051451379862565 (8881, 8882)UNCLASSIFIED1041451477883302 (8903, 8904)UNCLASSIFIED1019451511088007 (8905, 8906)UNCLASSIFIED1020451680077674 (8907, 8908)UNCLASSIFIED1004, 1031451730797043 (8911, 8912)UNCLASSIFIED1014451810845648 (8913, 8914)UNCLASSIFIED1001451935101562 (8921, 8922)UNCLASSIFIED1022452033200646 (8931, 8932)UNCLASSIFIED1024452178473190 (8937, 8938)UNCLASSIFIED1024452277915440 (8951, 8952)UNCLASSIFIED1033452371760619 (8957, 8958)UNCLASSIFIED1002452433764227 (8981, 8982)UNCLASSIFIED1024452571768824 (8997, 8998)UNCLASSIFIED1002, 1051452620396723 (9003, 9004)UNCLASSIFIED1008452720728632 (9007, 9008)UNCLASSIFIED1022452827980170 (9015, 9016)UNCLASSIFIED1004452911706751 (9019, 9020)UNCLASSIFIED1035453091236129 (9025, 9026)UNCLASSIFIED1042453111773980 (9029, 9030)UNCLASSIFIED1023453278238336 (9031, 9032)UNCLASSIFIED1024453325242940 (9033, 9034)UNCLASSIFIED1041453479619732 (9045, 9046)UNCLASSIFIED1023


[0340]

3








TABLE 2








tissue





id
tissue heirarchy
Common conditions/diseases
Other diseases







1000
Cardiovascular System/Artery/Coronary Artery




1001
Cardiovascular System/Heart
cancer, trauma, regeneration (in vitro and in
Cardiomyopathy,




vivo), viral/bacterial/parasitic infections
Atherosclerosis, Hypertension,





Congenital heart defects, Aortic stenosis,





Atrial septal defect





(ASD), Atrioventricular (A-V) canal defect,





Ductus arteriosus, Pulmonary stenosis,





Subaortic stenosis, Ventricular septal





defect (VSD), valve diseases, Tuberous





sclerosis, Scleroderma,





Obesity, Transplantation


1002
Endocrine System/Adrenal
cancer, trauma, regeneration (in vitro and in
Adrenoleukodystrophy, Congenital



Gland/Suprarenal gland
vivo), viral/bacterial/parasitic infections
Adrenal Hyperplasia,


1003
Endocrine System/Pancreas
cancer, trauma, regeneration (in vitro and in
Diabetes, Von Hippel-Lindau (VHL)




vivo), viral/bacterial/parasitic infections
syndrome, Pancreatitis, Obesity


1004
Endocrine System/Thyroid
cancer, trauma, regeneration (in vitro and in
Hyperthyroidism and Hypothyroidism




vivo), viral/bacterial/parasitic infections


1005
Female Reproductive System/Cervix
cancer, trauma, regeneration (in vitro and in
Fertility




vivo), viral/bacterial/parasitic infections


1006
Female Reproductive System/Mammary
cancer, trauma, regeneration (in vitro and in
Fertility



gland/Breast
vivo), viral/bacterial/parasitic infections


1007
Female Reproductive System/Ovary
cancer, trauma, regeneration (in vitro and in
Endometriosis, Fertility




vivo), viral/bacterial/parasitic infections


1008
Female Reproductive System/Placenta
cancer, trauma, regeneration (in vitro and in
Fertility




vivo), viral/bacterial/parasitic infections


1009
Female Reproductive



System/Placenta/Chorionic Villus


1010
Female Reproductive System/Uterus
cancer, trauma, regeneration (in vitro and in
Endometriosis, Fertility




vivo), viral/bacterial/parasitic infections


1011
Female Reproductive
cancer, trauma, regeneration (in vitro and in
Endometriosis Fertility



System/Uterus/Myometrium
vivo), viral/bacterial/parasitic infections


1012
Gastro-intestinal/Digestive System/Large
cancer, trauma, regeneration (in vitro and in
Hirschsprung's disease, Crohn's



Intestine/Colon
vivo), viral/bacterial/parasitic infections
Disease, Appendicitis


1013
Gastro-intestinal/Digestive System/Large



Intestine/Colon/Ascending Colon


1014
Gastro-intestinal/Digestive System/Liver
cancer, trauma, regeneration (in vitro and in
Von Hippel-Lindau (VHL) syndrome,




vivo), viral/bacterial/parasitic infections
Cirrhosis, Transplantation


1015
Gastro-intestinal/Digestive System/Salivary



Glands


1016
Gastro-intestinal/Digestive System/Salivary



Glands/Parotid Salivary glands


1017
Gastro-intestinal/Digestive System/Small



Intestine


1018
Gastro-intestinal/Digestive System/Small



Intestine/Duodenum


1019
Gastro-intestinal/Digestive System/Stomach
cancer, trauma, regeneration (in vitro and in
Hypercalceimia, Ulcers




vivo), viral/bacterial/parasitic infections


1020
Hematopoietic and Lymphatic
cancer, trauma, regeneration (in vitro and in
Hemophilia, hypercoagulation, Idiopathic



System/Hematopoietic Tissues/Bone
vivo), viral/bacterial/parasitic infections
thrombocytopenic purpura, autoimmume



Marrow

disease, allergies,





immunodeficiencies, transplantation,





Graft vesus host,


1021
Hematopoietic and Lymphatic
cancer, trauma, regeneration (in vitro and in
Hemophilia, hypercoagulation, idiopathic



System/Hematopoietic Tissues/Lymphoid
vivo), viral/bacterial/parasitic infections
thrombocytopenic purpura, autoimmume



tissue

disease, allergies, immunodeficiencies,





transplantation, Graft versus host





disease (GVHD), Lymphaedema


1022
Hematopoietic and Lymphatic



System/Hematopoietic Tissues/Lymphoid



tissue/Lymph node


1023
Hematopoietic and Lymphatic
cancer, trauma, regeneration (in vitro and in
Hemophilia, Hypercoagulation, Idiopathic



System/Hematopoietic Tissues/Lymphoid
vivo), viral/bacterial/parasitic infections
thrombocytopenic purpura,



tissue/Spleen

Immunodeficiencies, Graft vesus host


1024
Hematopoietic and Lymphatic
cancer, trauma, regeneration (in vitro and in
Anemia, Ataxia-



System/Hematopoietic Tissues/Peripheral
vivo), viral/bacterial/parasitic infections
telangiectasia, Autoimmume



Blood

disease, Immunodeficiencies


1025
Hematopoietic and Lymphatic
cancer, trauma, regeneration (in vitro and in
Hemophilia, hypercoagulation, Idiopathic



System/Hematopoietic Tissues/Thymus
vivo), viral/bacterial/parasitic infections
thrombocytopenic purpura,





immunodeficiencies


1026
Male Reproductive System/Prostate
cancer, trauma, regeneration (in vitro and in
Fertility




vivo), viral/bacterial/parasitic infections


1027
Male Reproductive System/Testis
cancer, trauma, regeneration (in vitro and in
Fertility




vivo), viral/bacterial/parasitic infections


1028
Musculoskeletal System/Bone
cancer, trauma, regeneration (in vitro and in
Osteoporosis, Hypercalceimia, Arthritis,




vivo), viral/bacterial/parasitic infections
Ankylosing spondylitis, Scoliosis


1029
Musculoskeletal System/Muscle
cancer, trauma, regeneration (in vitro and in
Muscular dystrophy, Lesch-Nyhan




vivo), viral/bacterial/parasitic infections
syndrome, Myasthenia gravis


1030
Musculoskeletal System/Muscle/Skeletal
cancer, trauma, regeneration (in vitro and in
Muscular dystrophy, Lesch-Nyhan



Muscle
vivo), viral/bacterial/parasitic infections
syndrome, Myasthenia gravis


1031
Nervous System/Brain
cancer, trauma, regeneration (in vitro and in
Von Hippel-Lindau (VHL) syndrome,




vivo), viral/bacterial/parasitic infections
Alzheimer's disease, Stroke, Tuberous





sclerosis, hypercalceimia, Parkinson's





disease, Huntington's disease, Cerebral





palsy, Epilepsy, Lesch-Nyhan syndrome,





Multiple sclerosis, Ataxia-





telangiectasia, Leukodystrophies, Behavioral





disorders, Addiction, Anxiety, Pain,





Neuroprotection


1032
Nervous System/Brain/Brain



Stem/Hindbrain/Cerebellum


1033
Nervous System/Brain/Hippocampus


1034
Nervous



System/Brain/Prosencephalon/Forebrain/



Dienecephalon/Hypothalamus


1035
Nervous
cancer, trauma, regeneration (in vitro and in
Endocrine dysfunctions, Diabetes,



SystemlBrain/Prosencephalon/Forebrain/
vivo), viral/bactenal/parasitic infections
obesity, Growth and reproductive



Dienecephalon/Pituitary Gland

disorders


1036
Nervous



System/Brain/Prosencephalon/Forebrain/



Dienecephalon/Thalamus


1037
Nervous



System/Brain/Prosencephalon/Forebrain/



Telencephalon/Cerebrum/Cerebral



Cortex/Cerebral Gray Matter/Cerebral



gyri/Temporal Lobe/Amygdala


1038
Nervous System/Brain/Substantia Nigra
cancer, trauma, regeneration (in vitro and in
Von Hippel-Lindau (VHL) syndrome,




vivo), viral/bacterial/parasitic infections
Alzheimer's disease, Stroke, Tuberous





sclerosis, hypercalceimia, Parkinson's





disease, Huntington's disease, Cerebral





palsy, Epilepsy, Lesch-Nyhan syndrome,





Multiple sclerosis, Ataxia-





teiangiectasia, Leukodystrophies, Behavioral





disorders, Addiction, Anxiety, Pain,





Neuroprotection


1039
Nervous System/Spinal Chord


1040
Respiratory System/Larynx


1041
Respiratory System/Lung
cancer, trauma, regeneration (in vitro and in
Systemic lupus erythematosus,




vivo), viral/bacterial/parasitic infections
Autoimmune disease, Asthma,





Emphysema, Scleroderma


1042
Respiratory System/Lung/Lung Pleura


1043
Respiratory System/Trachea


1044
Sensory System/Eye/Retina
cancer, trauma, regeneration (in vitro and in
Von Hippel-Lindau (VHL) syndrome,




vivo), viral/bacterial/parasitic infections
Diabetes, Tuberous sclerosis


1045
Sensory System/Skin
cancer, trauma, regeneration (in vitro and in
Psoriasis, Actinic keratosis, Tuberous




vivo), viral/bacterial/parasitic infections
sclerosis


1046
Sensory System/Skin/Dermis


1047
Sensory System/Skin/Epidermis


1048
Sensory System/Skin/Epidermis/Hair



Follicles


1049
Sensory System/Skin/Foreskin
cancer, trauma, regeneration (in vitro and in
Psoriasis, Actinic keratosis, Tuberous




vivo), viral/bacterial/parasitic infections
sclerosis


1050
Tissue Not Assigned


1051
Urinary System/Kidney
cancer, trauma, regeneration (in vitro and in
Diabetes, Autoimmune disease, Renal




vivo), viral/bacterial/parasitic infections
artery stenosis, Interstitial nephritis,





Glomerulonephritis, Polycystic kidney





disease, Systemic lupus erythematosus,





Renal tubular acidosis, IgA nephropathy,





Hypercalceimia, Lesch-Nyhan syndrome


1052
Urinary System/Kidney/Kidney Cortex


1053
Urinary System/Kidney/Kidney



Cortex/Nephrons/Proximal Convoluted



Tubule


1054
Urinary System/Urinary Bladder


1055
Whole Organism
cancer, trauma, tissue regeneration (in vitro




and in vivo), viral/bacterial/parasitic infections,




immunological disease, respiratory disease,




gastro-intestinal diseases,




reproductive health, neurological and




neurodegenerative diseases, bone marrow




transplantation, metabolic and endocrine




diseases, allergy and inflammation,




nephrological disorders, cardiovascular




diseases, muscle, bone, joint and skeletal




disorders, hematopoietic disorders, urinary




system disorders










[0341]


Claims
  • 1. An isolated nucleic acid molecule encoding a polypeptide comprising an amino acid sequence that is at least 85% identical to a polypeptide including an amino acid sequence selected from the group consisting of SEQ ID NO:2n, wherein n is any integer 1-4534, or the complement thereof.
  • 2. The isolated nucleic acid molecule of claim 1, said molecule hybridizing under stringent conditions to a nucleic acid sequence complementary to a nucleic acid molecule comprising the sequence of nucleotides selected from the group consisting of SEQ ID NO:2n−1, wherein n is any integer 1-4534, or the complement thereof.
  • 3. The isolated nucleic acid molecule of claim 1, said molecule encoding a polypeptide comprising the amino acid sequence selected from the group consisting of SEQ ID NO: 2n, wherein n is any integer 1-4534, or an amino acid sequence comprising one or more conservative substitutions in the amino acid sequence selected from the group consisting of SEQ ID NO: 2n.
  • 4. The isolated nucleic acid molecule of claim 1, wherein said molecule encodes a polypeptide comprising the amino acid sequence selected from the group consisting of SEQ ID NO: 2n, wherein n is any integer 1-4534.
  • 5. The isolated nucleic acid molecule of claim 1, wherein said molecule comprises the sequence of nucleotides selected from the group consisting of SEQ ID NO:2n−1, wherein n is any integer 1-4534, or the complement thereof.
  • 6. An oligonucleotide less than 100 nucleotides in length and comprising at least 6 contiguous nucleotides selected from the group consisting of SEQ ID NO:2n−1, wherein n is any integer 1-4534, or the complement thereof.
  • 7. A vector comprising the nucleic acid molecule of claim 1.
  • 8. The vector of claim 7, wherein said vector is an expression vector.
  • 9. A host cell comprising the isolated nucleic acid molecule of claim 1.
  • 10. A substantially purified polypeptide comprising an amino acid sequence at least 80% identical to a polypeptide comprising the amino acid sequence selected from the group consisting of SEQ ID NO: 2n, wherein n is any integer 1-4534.
  • 11. The polypeptide of claim 10, wherein said polypeptide comprises the amino acid sequence selected from the group consisting of SEQ ID NO: 2n, wherein n is any integer 1-4534.
  • 12. An antibody that selectively binds to the polypeptide of claim 10.
  • 13. A pharmaceutical composition comprising a therapeutically or prophylactically effective amount of a therapeutic selected from the group consisting of: a) the nucleic acid of claim 1;b) the polypeptide of claim 10; and c) the antibody of claim 12;and a pharmaceutically acceptable carrier.
  • 14. A kit comprising in one or more containers, a therapeutically or prophylactically effective amount of the pharmaceutical composition of claim 13.
  • 15. A method of producing the polypeptide of claim 10, said method comprising culturing the host cell of claim 9 under conditions in which the nucleic acid molecule is expressed.
  • 16. A method of detecting the presence of the polypeptide of claim 10 in a sample, comprising contacting the sample with a compound that selectively binds to said polypeptide under conditions allowing the formation of a complex between said polypeptide and said compound, and detecting said complex, if present, thereby identifying said polypeptide in said sample.
  • 17. A method of detecting the presence of a nucleic acid molecule of claim 1 in a sample, the method comprising contacting the sample with a nucleic acid probe or primer that selectively binds to the nucleic acid molecule and determining whether the nucleic acid probe or primer bound to the nucleic acid molecule of claim 1 is present in the sample.
  • 18. A method for modulating the activity of the polypeptide of claim 10, the method comprising contacting a cell sample comprising the polypeptide of claim 10 with a compound that binds to said polypeptide in an amount sufficient to modulate the activity of the polypeptide.
  • 19. The use of a therapeutic in the manufacture of a medicament for treating a syndrome associated with a ORFX-associated disorder, wherein said therapeutic is selected from the group consisting of: a) the nucleic acid of claim 1;b) the polypeptide of claim 10; and c) the antibody of claim 12.
  • 20. A method for screening for a modulator of activity or of latency or predisposition to an ORFX-associated disorder, said method comprising: a) contacting a test compound with the polypeptide of claim 10; and b) determining if said test compound binds to said polypeptide, wherein binding of said test compound to said polypeptide indicates the test compound is a modulator of activity or of latency or predisposition to an ORFX-associated disorder.
  • 21. A method for screening for a modulator of activity or of latency or predisposition to an ORFX-associated disorder, said method comprising: a) administering a test compound to a test subject at an increased risk ORFX-associated disorder, wherein said test subject recombinantly expresses a polypeptide encoded by the nucleotide of claim 1;b) measuring expression the activity of said protein in said test subject; c) measuring the activity of said protein in a control subject that recombinantly expresses said protein and is not at increased risk for an ORFX-associated disorder; and d) comparing expression of said protein in said test subject and said control subject, wherein a change in the activity of said protein in said test subject relative to said control subject indicates the test compound is a modulator or of latency of predispostition to an ORFX-associated disorder.
  • 22. The method of claim 20, wherein said test animal is a recombinant test animal that expresses a test protein transgene or expresses said transgene under the control of a promoter at an increased level relative to a wild-type test animal, and wherein said promoter is not the native gene promoter of said transgene.
  • 23. A method for determining the presence of or predisposition to a disease associated with altered levels of a polypeptide of claim 11 in a subject, the method comprising: a) measuring the amount of the polypeptide in a sample from said subject; and b) comparing the amount of said polypeptide in step (a) to the amount of the polypeptide present in a control sample, wherein an alteration in the level of the polypeptide in step (a) as compared to the control sample indicates the presence of or predisposition to a disease in said subject.
  • 24. The method of claim 23, wherein said subject is a human.
  • 25. A method for determining the presence of or predisposition to a disease associated with altered levels the nucleic acid molecule of claim 1 in a subject, the method comprising: a) measuring the amount of the nucleic acid in a sample from the mammalian subject; and b) comparing the amount of said nucleic acid in step (a) to the amount of the nucleic acid present in a control sample, wherein an alteration in the level of the nucleic acid in step (a) as compared to the control sample indicates the presence of or predisposition to said disease in said subject.
  • 26. The method of claim 25, wherein said subject is a human.
  • 27. A method of treating or preventing a pathological condition associated with an ORFX-associated disorder in a subject, the method comprising administering to said subject the polypeptide of claim 10 in an amount sufficient to alleviate or prevent said pathological condition.
  • 28. The method of claim 27, wherein said subject is a human.
  • 29. A method of treating or preventing a pathological condition associated with an ORFX-associated disorder in a subject, the method comprising administering to said subject the nucleic acid molecule of claim 1 in an amount sufficient to alleviate or prevent said pathological condition.
  • 30. The method of claim 29, wherein said subject is a human.
  • 31. A method of treating or preventing a pathological condition associated with an ORFX-associated disorder in a subject, the method comprising administering to said subject the antibody of claim 12 in an amount sufficient to alleviate or prevent said pathological condition.
  • 32. The method of claim 31, wherein said subject is a human.
RELATED APPLICATIONS

[0001] This application claims priority to U.S. Ser. No. 60/206,690 filed May 24, 2000, which is incorporated herein by reference in its entirety.

Provisional Applications (1)
Number Date Country
60206690 May 2000 US