Nucleic acid and amino acid sequences relating to Streptococcus pneumoniae for diagnostics and therapeutics

Abstract

The invention provides isolated polypeptide and nucleic acid sequences derived from Streptococcus pneumonia that are useful in diagnosis and therapy of pathological conditions; antibodies against the polypeptides; and methods for the production of the polypeptides. The invention also provides methods for the detection, prevention and treatment of pathological conditions resulting from bacterial infection.

Description

FIELD OF THE INVENTION

The invention relates to isolated nucleic acids and polypeptides derived from Streptococcus pneumoniae that are useful as molecular targets for diagnostics, prophylaxis and treatment of pathological conditions, as well as materials and methods for the diagnosis, prevention, and amelioration of pathological conditions resulting from bacterial infection.

BACKGROUND OF THE INVENTION

Streptococcus pneumoniae ( S. pneumoniae ) is a common, spherical, gram-positive bacterium. Worldwide it is a leading cause of illness among children, the elderly, and individuals with debilitating medical conditions (Breiman, R. F. et al., 1994, JAMA 271: 1831). S. pneumoniae is estimated to be the causal agent in 3,000 cases of meningitis, 50,000 cases of bacteremia, 500,000 cases of pneumonia, and 7,000,000 cases of otitis media annnually in the United States alone (Reichler, M. R. et al., 1992, J. Infect. Dis. 166: 1346; Stool, S. E. and Field, M. J., 1989 Pediatr. Infect. Dis J. 8: S11). In the United States alone, 40,000 deaths result annually from S. pneumoniae infections (Williams, W. W. et al., 1988 Ann. Intern. Med. 108: 616) with a death rate approaching 30% from bacteremia (Butler, J. C. et al., 1993, JAMA 270: 1826). Pneumococcal pneumonia is a serious problem among the elderly of industrialized nations (Käyhty, H. and Eskola, J., 1996 Emerg. Infect. Dis. 2: 289) and is a leading cause of death among children in developing nations (Käyhty, H. and Eskola, J., 1996 Emerg. Infect. Dis. 2: 289; Stansfield, S. K., 1987 Pediatr. Infect. Dis. 6: 622).

Vaccines against S. pneumoniae have been available for a number of years. There are a large number of serotypes based on the polysaccharide capsule (van Dam, J. E., Fleer, A., and Snippe, H., 1990 Antonie van Leeuwenhoek 58: 1) although only a fraction of the serotypes seem to be associated with infections (Martin, D. R. and Brett, M. S., 1996 N. Z. Med. J. 109: 288). A multivalent vaccine against capsular polysaccharides of 23 serotypes (Smart, L. E., Dougall, A. J. and Gridwood, R. W., 1987 J. Infect. 14: 209) has provided protection for some groups but not for several groups at risk for pneumococcal infections, such as infants and the elderly (Makel, P. H. et al. 1980 Lancet 2: 547; Sankilampi, U., 1996 J. Infect. Dis. 173: 387). Conjugated pneumococcal capsular polysaccharide vaccines have somewhat improved efficacy, but are costly and, therefore, are not likely to be be in widespread use (Käyhty, H. and Eskola, J., 1996 Emerg. Infect. Dis. 2: 289).

At one time, S. pneumoniae strains were uniformly susceptible to penicillin. The report of a penicillin-resistant strain of (Hansman, D. and Bullen, M. M., 1967 Lancet 1: 264) was followed rapidly by many reports indicating the worldwide emergence of penicillin-resistant and penicillin non-susceptible strains (Klugman, K. P., 1990 Clin. Microbiol. Rev. 3: 171). S. pneumoniae strains which are resistant to multiple antibiotics (including penicillin) have also been observed recently within the United States (Welby, P. L., 1994 Pediatr. Infect. Dis. J. 13: 281; Ducin, J. S. et al., 1995 Pediatr. Infect. Dis. J. 14: 745; Butler, J. C., 1996 J. Infect. Dis. 174: 986) as well as internationally (Boswell, T. C. et al., 1996; J. Infect. 33: 17; Catchpole, C., Fraise, A., and Wise, R., 1996 Microb. Drug Resist. 2: 431; Tarasi, A. et al., 1997 Microb. Drug Resist. 3: 105).

A high incidence of morbidity is associated with invasive S. pneumoniae infections (Williams, W. W. et al., 1988 Ann. Intern. Med. 108: 616). Because of the incomplete effectiveness of currently available vaccines and antibiotics, the identification of new targets for antimicrobial therapies, including, but not limited to, the design of vaccines and antibiotics, which may help prevent infection or that may be useful in fighting existing infections, is highly desirable.

SUMMARY OF THE INVENTION

The present invention fulfills the need for diagnostic tools and threapeutics by providing bacterial-specific compositions and methods for detecting, treating, and preventing bacterial infection, in particular S. pneumoniae infection.

The present invention encompasses isolated polypeptides and nucleic acids derived from S. pneumoniae that are useful as reagents for diagnosis of bacterial infection, components of effective antibacterial vaccines, and/or as targets for antibacterial drugs, including anti- S. pneumoniae drugs. The nucleic acids and peptides of the present invention also have utility for diagnostics and therapeutics for S. pneumoniae and other Streptococcus species. They can also be used to detect the presence of S. pneumoniae and other Streptococcus species in a sample; and in screening compounds for the ability to interfere with the S. pneumoniae life cycle or to inhibit S. pneumoniae infection. More specifically, this invention features compositions of nucleic acids corresponding to entire coding sequences of S. pneumoniae proteins, including surface or secreted proteins or parts thereof, nucleic acids capable of binding mRNA from S. pneumoniae proteins to block protein translation, and methods for producing S. pneumoniae proteins or parts thereof using peptide synthesis and recombinant DNA techniques. This invention also features antibodies and nucleic acids useful as probes to detect S. pneumoniae infection. In addition, vaccine compositions and methods for the protection or treatment of infection by S. pneumoniae are within the scope of this invention.

The nucleotide sequences provided in SEQ ID NO: 1-SEQ ID NO: 2603, a fragment thereof, or a nucleotide sequence at least 99.5% identical to a sequence contained within SEQ ID NO: 1-SEQ ID NO: 2603 may be “provided” in a variety of medias to facilitate use thereof. As used herein, “provided” refers to a manufacture, other than an isolated nucleic acid molecule, which contains a nucleotide sequence of the present invention, i.e., the nucleotide sequence provided in SEQ ID NO: 1-SEQ ID NO: 2603, a fragment thereof, or a nucleotide sequence at least 99.5% identical to a sequence contained within SEQ ID NO: 1-SEQ ID NO: 2603. Uses for and methods for providing nucleotide sequences in a variety of media is well known in the art (see e.g., EPO Publication No. EP 0 756 006)

In one application of this embodiment, a nucleotide sequence of the present invention can be recorded on computer readable media. As used herein, “computer readable media” refers to any media which can be read and accessed directly by a computer. Such media include, but are not limited to: magnetic storage media, such as floppy discs, hard disc storage media, and magnetic tape; optical storage media such as CD-ROM; electrical storage media such as RAM and ROM; and hybrids of these categories such as magnetic/optical storage media. A person skilled in the art can readily appreciate how any of the presently known computer readable media can be used to create a manufacture comprising computer readable media having recorded thereon a nucleotide sequence of the present invention.

As used herein, “recorded” refers to a process for storing information on computer readable media. A person skilled in the art can readily adopt any of the presently known methods for recording information on computer readable media to generate manufactures comprising the nucleotide sequence information of the present invention.

A variety of data storage structures are available to a person skilled in the art for creating a computer readable media having recorded thereon a nucleotide sequence of the present invention. The choice of the data storage structure will generally be based on the means chosen to access the stored information. In addition, a variety of data processor programs and formats can be used to store the nucleotide sequence information of the present invention on computer readable media. The sequence information can be represented in a word processing text file, formatted in commercially-available software such as WordPerfect and Microsoft Word, or represented in the form of an ASCII file, stored in a database application, such as DB2, Sybase, Oracle, or the like. A person skilled in the art can readily adapt any number of data processor structuring formats (e.g. text file or database) in order to obtain computer readable media having recorded thereon the nucleotide sequence information of the present invention.

By providing the nucleotide sequence of SEQ ID NO: 1-SEQ ID NO: 2603, a fragment thereof, or a nucleotide sequence at least 99.5% identical to a sequence contained within SEQ ID NO: 1-SEQ ID NO: 2603 in computer readable form, a person skilled in the art can routinely access the sequence information for a variety of purposes. Computer software is publicly available which allows a person skilled in the art to access sequence information provided in a computer readable media. Examples of such computer software include programs of the “Staden Package”, “DNA Star”, “MacVector”, GCG “Wisconsin Package” (Genetics Computer Group, Madison, WI)and “NCBI toolbox” (National Center for Biotechnology Information).

Computer algorithms enable the identification of S. pneumoniae open reading frames (ORFs) within SEQ ID NO: 1-SEQ ID NO: 2603 which contain homology to ORFs or proteins from other organisms. Examples of such similarity-search algorithms include the BLAST [Altschul et al., J. Mol. Biol. 215:403-410 (1990)] and Smith-Waterman [Smith and Waterman (1981) Advances in Applied Mathematics, 2:482-489] search algorithms. These algorithms are utilized on computer systems as exemplified below. The ORFs so identified represent protein encoding fragments within the S. pneumoniae genome and are useful in producing commercially important proteins such as enzymes used in fermentation reactions and in the production of commercially useful metabolites.

The present invention further provides systems, particularly computer-based systems, which contain the sequence information described herein. Such systems are designed to identify commercially important fragments of the S. pneumoniae genome. As used herein, “a computer-based system” refers to the hardware means, software means, and data storage means used to analyze the nucleotide sequence information of the present invention. The minimum hardware means of the computer-based systems of the present invention comprises a central processing unit (CPU), input means, output means, and data storage means. A person skilled in the art can readily appreciate that any one of the currently available computer-based systems is suitable for use in the present invention. The computer-based systems of the present invention comprise a data storage means having stored therein a nucleotide sequence of the present invention and the necessary hardware means and software means for supporting and implementing a search means. As used herein, “data storage means” refers to memory which can store nucleotide sequence information of the present invention, or a memory access means which can access manufactures having recorded thereon the nucleotide sequence information of the present invention.

As used herein, “search means” refers to one or more programs which are implemented on the computer-based system to compare a target sequence or target structural motif with the sequence information stored within the data storage means. Search means are used to identify fragments or regions of the S. pneumoniae genome which are similar to, or “match”, a particular target sequence or target motif. A variety of known algorithms are known in the art and have been disclosed publicly, and a variety of commercially available software for conducting homology-based similarity searches are available and can be used in the computer-based systems of the present invention. Examples of such software includes, but is not limited to, FASTA (GCG Wisconsin Package), Bic_SW (Compugen Bioccelerator, BLASTN2, BLASTP2 and BLASTX2 (NCBI) and Motifs (GCG). BLASTN2, A person skilled in the art can readily recognize that any one of the available algorithms or implementing software packages for conducting homology searches can be adapted for use in the present computer-based systems.

As used herein, a “target sequence” can be any DNA or amino acid sequence of six or more nucleotides or two or more amino acids. Aperson skilled in the art can readily recognize that the longer a target sequence is, the less likely a target sequence will be present as a random occurrence in the database. The most preferred sequence length of a target sequence is from about 10 to 100 amino acids or from about 30 to 300 nucleotide residues. However, it is well recognized that many genes are longer than 500 amino acids, or 1.5 kb in length, and that commercially important fragments of the S. pneumoniae genome, such as sequence fragments involved in gene expression and protein processing, will often be shorter than 30 nucleotides.

As used herein, “a target structural motif,” or “target motif,” refers to any rationally selected sequence or combination of sequences in which the sequence(s) are chosen based on a specific functional domain or three-dimensional configuration which is formed upon the folding of the target polypeptide. There are a variety of target motifs known in the art. Protein target motifs include, but are not limited to, enzymatic active sites, membrane spanning regions, and signal sequences. Nucleic acid target motifs include, but are not limited to, promoter sequences, hairpin structures and inducible expression elements (protein binding sequences).

A variety of structural formats for the input and output means can be used to input and output the information in the computer-based systems of the present invention. A preferred format for an output means ranks fragments of the S. pneumoniae genome possessing varying degrees of homology to the target sequence or target motif. Such presentation provides aperson skilled in the art with a ranking of sequences which contain various amounts of the target sequence or target motif and identifies the degree of homology contained in the identified fragment.

A variety of comparing means can be used to compare a target sequence or target motif with the data storage means to identify sequence fragments of the S. pneumoniae genome. In the present examples, implementing software which implement the BLASTP2 and bic_SW algorithms (Altschul et al., J. Mol. Biol. 215:403-410 (1990); Compugen Biocellerator) was used to identify open reading frames within the S. pneumoniae genome. A person skilled in the art can readily recognize that any one of the publicly available homology search programs can be used as the search means for the computer-based systems of the present invention.

The invention features S. pneumoniae polypeptides, preferably a substantially pure preparation of an S. pneumoniae polypeptide, or a recombinant S. pneumoniae polypeptide. In preferred embodiments: the polypeptide has biological activity; the polypeptide has an amino acid sequence at least 60%, 70%, 80%, 90%, 95%, 98%, or 99% identical to an amino acid sequence of the invention contained in the Sequence Listing, preferably it has about 65% sequence identity with an amino acid sequence of the invention contained in the Sequence Listing, and most preferably it has about 92% to about 99% sequence identity with an amino acid sequence of the invention contained in the Sequence Listing; the polypeptide has an amino acid sequence essentially the same as an amino acid sequence of the invention contained in the Sequence Listing; the polypeptide is at least 5, 10, 20, 50, 100, or 150 amino acid residues in length; the polypeptide includes at least 5, preferably at least 10, more preferably at least 20, more preferably at least 50, 100, or 150 contiguous amino acid residues of the invention contained in the Sequence Listing. In yet another preferred embodiment, the amino acid sequence which differs in sequence identity by about 7% to about 8% from the S. pneumoniae amino acid sequences of the invention contained in the Sequence Listing is also encompassed by the invention.

In preferred embodiments: the S. pneumoniae polypeptide is encoded by a nucleic acid of the invention contained in the Sequence Listing, or by a nucleic acid having at least 60%, 70%, 80%, 90%, 95%, 98%, or 99% homology with a nucleic acid of the invention contained in the Sequence Listing.

In a preferred embodiment, the subject S. pneumoniae polypeptide differs in amino acid sequence at 1, 2, 3, 5, 10 or more residues from a sequence of the invention contained in the Sequence Listing. The differences, however, are such that the S. pneumoniae polypeptide exhibits an S. pneumoniae biological activity, e.g., the S. pneumoniae polypeptide retains a biological activity of a naturally occurring S. pneumoniae enzyme.

In preferred embodiments, the polypeptide includes all or a fragment of an amino acid sequence of the invention contained in the Sequence Listing; fused, in reading frame, to additional amino acid residues, preferably to residues encoded by genomic DNA 5′ or 3′ to the genomic DNA which encodes a sequence of the invention contained in the Sequence Listing.

In yet other preferred embodiments, the S. pneumoniae polypeptide is a recombinant fusion protein having a first S. pneumoniae polypeptide portion and a second polypeptide portion, e.g., a second polypeptide portion having an amino acid sequence unrelated to S. pneumoniae . The second polypeptide portion can be, e.g., any of glutathione-S-transferase, a DNA binding domain, or a polymerase activating domain. In preferred embodiment the fusion protein can be used in a two-hybrid assay.

Polypeptides of the invention include those which arise as a result of alternative transcription events, alternative RNA splicing events, and alternative translational and postranslational events.

In a preferred embodiment, the encoded S. pneumoniae polypeptide differs (e.g., by amino acid substitution, addition or deletion of at least one amino acid residue) in amino acid sequence at 1, 2, 3, 5, 10 or more residues, from a sequence of the invention contained in the Sequence Listing. The differences, however, are such that: the S. pneumoniae encoded polypeptide exhibits a S. pneumoniae biological activity, e.g., the encoded S. pneumoniae enzyme retains a biological activity of a naturally occurring S. pneumoniae.

In preferred embodiments, the encoded polypeptide includes all or a fragment of an amino acid sequence of the invention contained in the Sequence Listing; fused, in reading frame, to additional amino acid residues, preferably to residues encoded by genomic DNA 5′ or 3′ to the genomic DNA which encodes a sequence of the invention contained in the Sequence Listing.

The S. pneumoniae strain, 14453, from which genomic sequences have been sequenced, has been deposited on Jun. 26, 1997 in the American Type Culture Collection and assigned the ATCC designation #55987.

Included in the invention are: allelic variations; natural mutants; induced mutants; proteins encoded by DNA that hybridize under high or low stringency conditions to a nucleic acid which encodes a polypeptide of the invention contained in the Sequence Listing (for definitions of high and low stringency see Current Protocols in Molecular Biology, John Wiley & Sons, New York, 1989, 6.3.1-6.3.6, hereby incorporated by reference); and, polypeptides specifically bound by antisera to S. pneumoniae polypeptides, especially by antisera to an active site or binding domain of S. pneumoniae polypeptide. The invention also includes fragments, preferably biologically active fragments. These and other polypeptides are also referred to herein as S. pneumoniae polypeptide analogs or variants.

The invention further provides nucleic acids, e.g., RNA or DNA, encoding a polypeptide of the invention. This includes double stranded nucleic acids as well as coding and antisense single strands.

In preferred embodiments, the subject S. pneumoniae nucleic acid will include a transcriptional regulatory sequence, e.g. at least one of a transcriptional promoter or transcriptional enhancer sequence, operably linked to the S. pneumoniae gene sequence, e.g., to render the S. pneumoniae gene sequence suitable for expression in a recombinant host cell.

In yet a further preferred embodiment, the nucleic acid which encodes an S. pneumoniae polypeptide of the invention, hybridizes under stringent conditions to a nucleic acid probe corresponding to at least 8 consecutive nucleotides of the invention contained in the Sequence Listing; more preferably to at least 12 consecutive nucleotides of the invention contained in the Sequence Listing; more preferably to at least 20 consecutive nucleotides of the invention contained in the Sequence Listing; more preferably to at least 40 consecutive nucleotides of the invention contained in the SequenceListing.

In another aspect, the invention provides a substantially pure nucleic acid having a nucleotide sequence which encodes an S. pneumoniae polypeptide. In preferred embodiments: the encoded polypeptide has biological activity; the encoded polypeptide has an amino acid sequence at least 60%, 70%, 80%, 90%, 95%, 98%, or 99% homologous to an amino acid sequence of the invention contained in the Sequence Listing; the encoded polypeptide has an amino acid sequence essentially the same as an amino acid sequence of the invention contained in the Sequence Listing; the encoded polypeptide is at least 5, 10, 20, 50, 100, or 150 amino acids in length; the encoded polypeptide comprises at least 5, preferably at least 10, more preferably at least 20, more preferably at least 50, 100, or 150 contiguous amino acids of the invention contained in the Sequence Listing.

In another aspect, the invention encompasses: a vector including a nucleic acid which encodes an S. pneumoniae polypeptide or an S. pneumoniae polypeptide variant as described herein; a host cell transfected with the vector; and a method of producing a recombinant S. pneumoniae polypeptide or S. pneumoniae polypeptide variant; including culturing the cell, e.g., in a cell culture medium, and isolating an S. pneumoniae polypeptide or an S. pneumoniae polypeptide variant, e.g., from the cell or from the cell culture medium.

In another series of embodiments, the invention provides isolated nucleic acids comprising sequences at least about 8 nucleotides in length, more preferably at least about 12 nucleotides in length, and most preferably at least about 15-20 nucleotides in length, that correspond to a subsequence of any one of SEQ ID NO: 1-SEQ ID NO: 2603 or complements thereof. Alternatively, the nucleic acids comprise sequences contained within any ORF (open reading frame), including a complete protein-coding sequence, of which any of SEQ ID NO: 1-SEQ ID NO: 2603 forms a part. The invention encompasses sequence-conservative variants and function-conservative variants of these sequences. The nucleic acids may be DNA, RNA, DNA/RNA duplexes, protein-nucleic acid (PNA), or derivatives thereof.

In another aspect, the invention features, a purified recombinant nucleic acid having at least 50%, 60%, 70%, 80%, 90%, 95%, 98%, or 99% homology with a sequence of the invention contained in the Sequence Listing.

In another aspect, the invention features nucleic acids capable of binding mRNA of S. pneumoniae . Such nucleic acid is capable of acting as antisense nucleic acid to control the translation of mRNA of S. pneumoniae . A further aspect features a nucleic acid which is capable of binding specifically to an S. pneumoniae nucleic acid. These nucleic acids are also referred to herein as complements and have utility as probes and as capture reagents.

In another aspect, the invention features an expression system comprising an open reading frame corresponding to S. pneumoniae nucleic acid. The nucleic acid further comprises a control sequence compatible with an intended host. The expression system is useful for making polypeptides corresponding to S. pneumoniae nucleic acid.

In another aspect, the invention features a cell transformed with the expression system to produce S. pneumoniae polypeptides.

In yet another embodiment, the invention encompasses reagents for detecting bacterial infection, including S. pneumoniae infection, which comprise at least one S. pneumoniae -derived nucleic acid defined by any one of SEQ ID NO: 1-SEQ ID NO: 2603, or sequence-conservative or function-conservative variants thereof. Alternatively, the diagnostic reagents comprise polypeptide sequences that are contained within any open reading frames (ORFs), including complete protein-coding sequences, contained within any of SEQ ID NO: 1-SEQ ID NO: 2603, or polypeptide sequences contained within any of SEQ ID NO: 2604-SEQ ID NO: 5206, or polypeptides of which any of the above sequences forms a part, or antibodies directed against any of the above peptide sequences or function-conservative variants and/or fragments thereof.

The invention further provides antibodies, preferably monoclonal antibodies, which specifically bind to the polypeptides of the invention. Methods are also provided for producing antibodies in a host animal. The methods of the invention comprise immunizing an animal with at least one S. pneumoniae -derived immunogenic component, wherein the immunogenic component comprises one or more of the polypeptides encoded by any one of SEQ ID NO: 1-SEQ ID NO: 2603 or sequence-conservative or, function-conservative variants thereof; or polypeptides that are contained within any ORFs, including complete protein-coding sequences, of which any of SEQ ID NO: 1-SEQ ID NO: 2603 forms a part; or polypeptide sequen ID NO: 2604-SEQ ID NO: 5206; or polypeptides of which any of SEQ ID NO: 2604-SEQ ID NO: 5206 forms a part. Host animals include any warm blooded animal, including without limitation mammals and birds. Such antibodies have utility as reagents for immunoassays to evaluate the abundance and distribution of S. pneumoniae -specific antigens.

In yet another aspect, the invention provides a method for detecting bacterial antigenic components in a sample, which comprises the steps of: (i) contacting a sample suspected to contain a bacterial antigenic component with a bacterial-specific antibody, under conditions in which a stable antigen-antibody complex can form between the antibody and bacterial antigenic components in the sample; and (ii) detecting any antigen-antibody complex formed in step (i), wherein detection of an antigen-antibody complex indicates the presence of at least one bacterial antigenic component in the sample. In different embodiments of this method, the antibodies used are directed against a sequence encoded by any of SEQ ID NO: 1-SEQ ID NO: 2603 or sequence-conservative or function-conservative variants thereof, or against a polypeptide sequence contained in any of SEQ ID NO: 2604-SEQ ID NO: 5206 or function-conservative variants thereof.

In yet another aspect, the invention provides a method for detecting antibacterial-specific antibodies in a sample, which comprises: (i) contacting a sample suspected to contain antibacterial-specific antibodies with a S. pneumoniae antigenic component, under conditions in which a stable antigen-antibody complex can form between the S. pneumoniae antigenic component and antibacterial antibodies in the sample; and (ii) detecting any antigen-antibody complex formed in step (i), wherein detection of an antigen-antibody complex indicates the presence of antibacterial antibodies in the sample. In different embodiments of this method, the antigenic component is encoded by a sequence contained in any of SEQ ID NO: 1-SEQ ID NO: 2603 or sequence-conservative and function-conservative variants thereof, or is a polypeptide sequence contained in any of SEQ ID NO: 2604-SEQ ID NO: 5206 or function-conservative variants thereof.

In another aspect, the invention features a method of generating vaccines for immunizing an individual against S. pneumoniae . The method includes: immunizing a subject with an S. pneumoniae polypeptide, e.g., a surface or secreted polypeptide, or active portion thereof, and a pharmaceutically acceptable carrier. Such vaccines have therapeutic and prophylactic utilities.

In another aspect, the invention features a method of evaluating a compound, e.g. a polypeptide, e.g., a fragment of a host cell polypeptide, for the ability to bind an S. pneumoniae polypeptide. The method includes: contacting the candidate compound with an S. pneumoniae polypeptide and determining if the compound binds or otherwise interacts with an S. pneumoniae polypeptide. Compounds which bind S. pneumoniae are candidates as activators or inhibitors of the bacterial life cycle. These assays can be performed in vitro or in vivo.

In another aspect, the invention features a method of evaluating a compound, e.g. a polypeptide, e.g., a fragment of a host cell polypeptide, for the ability to bind an S. pneumoniae nucleic acid, e.g., DNA or RNA. The method includes: contacting the candidate compound with an S. pneumoniae nucleic acid and determining if the compound binds or otherwise interacts with an S. pneumoniae polypeptide. Compounds which bind S. pneumoniae are candidates as activators or inhibitors of the bacterial life cycle. These assays can be performed in vitro or in vivo.

DETAILED DESCRIPTION OF THE INVENTION

The sequences of the present invention include the specific nucleic acid and amino acid sequences set forth in the Sequence Listing that forms a part of the present specification, and which are designated SEQ ID NO: 1-SEQ ID NO: 5206. Use of the terms “SEQ ID NO: 1-SEQ ID NO: 2603”, “SEQ ID NO: 2604-SEQ ID NO: 5206”, “the sequences depicted in Table 2”, etc., is intended, for convenience, to refer to each individual SEQ ID NO individually, and is not intended to refer to the genus of these sequences. In other words, it is a shorthand for listing all of these sequences individually. The invention encompasses each sequence individually, as well as any combination thereof.

Definitions

“Nucleic acid” or “polynucleotide” as used herein refers to purine- and pyrimidine-containing polymers of any length, either polyribonucleotides or polydeoxyribonucleotides or mixed polyribo-polydeoxyribo nucleotides. This includes single- and double-stranded molecules, i.e., DNA-DNA, DNA-RNA and RNA-RNA hybrids, as well as “protein nucleic acids” (PNA) formed by conjugating bases to an amino acid backbone. This also includes nucleic acids containing modified bases.

A nucleic acid or polypeptide sequence that is “derived from” a designated sequence refers to a sequence that corresponds to a region of the designated sequence. For nucleic acid sequences, this encompasses sequences that are homologous or complementary to the sequence, as well as “sequence-conservative variants” and “function-conservative variants.” For polypeptide sequences, this encompasses “function-conservative variants.” Sequence-conservative variants are those in which a change of one or more nucleotides in a given codon position results in no alteration in the amino acid encoded at that position. Function-conservative variants are those in which a given amino acid residue in a polypeptide has been changed without altering the overall conformation and function of the native polypeptide, including, but not limited to, replacement of an amino acid with one having similar physico-chemical properties (such as, for example, acidic, basic, hydrophobic, and the like). “Function-conservative” variants also include any polypeptides that have the ability to elicit antibodies specific to a designated polypeptide.

An “ S. pneumoniae -derived” nucleic acid or polypeptide sequence may or may not be present in other bacterial species, and may or may not be present in all S. pneumoniae strains. This term is intended to refer to the source from which the sequence was originally isolated. Thus, a S. pneumoniae -derived polypeptide, as used herein, may be used, e.g., as a target to screen for a broad spectrum antibacterial agent, to search for homologous proteins in other species of bacteria or in eukaryotic organisms such as fungi and humans, etc.

A purified or isolated polypeptide or a substantially pure preparation of a polypeptide are used interchangeably herein and, as used herein, mean a polypeptide that has been separated from other proteins, lipids, and nucleic acids with which it naturally occurs. Preferably, the polypeptide is also separated from substances, e.g., antibodies or gel matrix, e.g., polyacrylamide, which are used to purify it. Preferably, the polypeptide constitutes at least 10, 20, 50 70, 80 or 95% dry weight of the purified preparation. Preferably, the preparation contains: sufficient polypeptide to allow protein sequencing; at least 1, 10, or 100 mg of the polypeptide.

A purified preparation of cells refers to, in the case of plant or animal cells, an in vitro preparation of cells and not an entire intact plant or animal. In the case of cultured cells or microbial cells, it consists of a preparation of at least 10% and more preferably 50% of the subject cells.

A purified or isolated or a substantially pure nucleic acid, e.g., a substantially pure DNA, (are terms used interchangeably herein) is a nucleic acid which is one or both of the following: not immediately contiguous with both of the coding sequences with which it is immediately contiguous (i.e., one at the 5′ end and one at the 3′ end) in the naturally-occurring genome of the organism from which the nucleic acid is derived; or which is substantially free of a nucleic acid with which it occurs in the organism from which the nucleic acid is derived. The term includes, for example, a recombinant DNA which is incorporated into a vector, e.g., into an autonomously replicating plasmid or virus, or into the genomic DNA of a prokaryote or eukaryote, or which exists as a separate molecule (e.g., a cDNA or a genomic DNA fragment produced by PCR or restriction endonuclease treatment) independent of other DNA sequences. Substantially pure DNA also includes a recombinant DNA which is part of a hybrid gene encoding additional S. pneumoniae DNA sequence.

A “contig” as used herein is a nucleic acid representing a continuous stretch of genomic sequence of an organism.

An “open reading frame”, also referred to herein as ORF, is a region of nucleic acid which encodes a polypeptide. This region may represent a portion of a coding sequence or a total sequence and can be determined from a stop to stop codon or from a start to stop codon.

As used herein, a “coding sequence” is a nucleic acid which is transcribed into messenger RNA and/or translated into a polypeptide when placed under the control of appropriate regulatory sequences. The boundaries of the coding sequence are determined by a translation start codon at the five prime terminus and a translation stop code at the three prime terminus. A coding sequence can include but is not limited to messenger RNA, synthetic DNA, and recombinant nucleic acid sequences.

A “complement” of a nucleic acid as used herein refers to an anti-parallel or antisense sequence that participates in Watson-Crick base-pairing with the original sequence.

A “gene product” is a protein or structural RNA which is specifically encoded by agene.

As used herein, the term “probe” refers to a nucleic acid, peptide or other chemical entity which specifically binds to a molecule of interest. Probes are often associated with or capable of associating with a label. A label is a chemical moiety capable of detection. Typical labels comprise dyes, radioisotopes, luminescent and chemiluminescent moieties, fluorophores, enzymes, precipitating agents, amplification sequences, and the like. Similarly, a nucleic acid, peptide or other chemical entity which specifically binds to a molecule of interest and immobilizes such molecule is referred herein as a “capture ligand”. Capture ligands are typically associated with or capable of associating with a support such as nitro-cellulose, glass, nylon membranes, beads, particles and the like. The specificity of hybridization is dependent on conditions such as the base pair composition of the nucleotides, and the temperature and salt concentration of the reaction. These conditions are readily discemable to one of ordinary skill in the art using routine experimentation.

“Homologous” refers to the sequence similarity or sequence identity between two polypeptides or between two nucleic acid molecules. When a position in both of the two compared sequences is occupied by the same base or amino acid monomer subunit, e.g., if a position in each of two DNA molecules is occupied by adenine, then the molecules are homologous at that position. The percent of homology between two sequences is a function of the number of matching or homologous positions shared by the two sequences divided by the number of positions compared ×100. For example, if 6 of 10 of the positions in two sequences are matched or homologous then the two sequences are 60% homologous. By way of example, the DNA sequences ATTGCC and TATGGC share 50% homology. Generally, a comparison is made when two sequences are aligned to give maximum homology.

Nucleic acids are hybridizable to each other when at least one strand of a nucleic acid can anneal to the other nucleic acid under defined stringency conditions. Stringency of hybridization is determined by: (a) the temperature at which hybridization and/or washing is performed; and (b) the ionic strength and polarity of the hybridization and washing solutions. Hybridization requires that the two nucleic acids contain complementary sequences; depending on the stringency of hybridization, however, mismatches may be tolerated. Typically, hybridization of two sequences at high stingency (such as, for example, in a solution of 0.5×SSC, at 65° C.) requires that the sequences be essentially completely homologous. Conditions of intermediate stringency (such as, for example, 2×SSC at 65° C.) and low stringency (such as, for example 2×SSC at 55° C.), require correspondingly less overall complementarity between the hybridizing sequences. (1×SSC is 0.15 M NaCl, 0.015 M Na citrate).

The terms peptides, proteins, and polypeptides are used interchangeably herein.

As used herein, the term “surface protein” refers to all surface accessible proteins, e.g. inner and outer membrane proteins, proteins adhering to the cell wall, and secreted proteins.

A polypeptide has S. pneumoniae biological activity if it has one, two and preferably more of the following properties: (1) if when expressed in the course of an S. pneumoniae infection, it can promote, or mediate the attachment of S. pneumoniae to a cell; (2) it has an enzymatic activity, structural or regulatory function characteristic of an S. pneumoniae protein; (3) or the gene which encodes it can rescue a lethal mutation in an S. pneumoniae gene. A polypeptide has biological activity if it is an antagonist, agonist, or super-agonist of a polypeptide having one of the above-listed properties.

A biologically active fragment or analog is one having an in vivo or in vitro activity which is characteristic of the S. pneumoniae polypeptides of the invention contained in the Sequence Listing, or of other naturally occurring S. pneumoniae polypeptides, e.g., one or more of the biological activities described herein. Especially preferred are fragments which exist in vivo, e.g., fragments which arise from post transcriptional processing or which arise from translation of alternatively spliced RNA's. Fragments include those expressed in native or endogenous cells as well as those made in expression systems, e.g., in CHO cells. Because peptides such as S. pneumoniae polypeptides often exhibit a range of physiological properties and because such properties may be attributable to different portions of the molecule, a useful S. pneumoniae fragment or S. pneumoniae analog is one which exhibits a biological activity in any biological assay for S. pneumoniae activity. Most preferably the fragment or analog possesses 10%, preferably 40%, more preferably 60%, 70%, 80% or 90% or greater of the activity of S. pneumoniae , in any in vivo or in vitro assay.

Analogs can differ from naturally occurring S. pneumoniae polypeptides in amino acid sequence or in ways that do not involve sequence, or both. Non-sequence modifications include changes in acetylation, methylation, phosphorylation, carboxylation, or glycosylation. Preferred analogs include S. pneumoniae polypeptides (or biologically active fragments thereof) whose sequences differ from the wild-type sequence by one or more conservative amino acid substitutions or by one or more non-conservative amino acid substitutions, deletions, or insertions which do not substantially diminish the biological activity of the S. pneumoniae polypeptide. Conservative substitutions typically include the substitution of one amino acid for another with similar characteristics, e.g., substitutions within the following groups: valine, glycine; glycine, alanine; valine, isoleucine, leucine; aspartic acid, glutamic acid; asparagine, glutamine; serine, threonine; lysine, arginine; and phenylalanine, tyrosine. Other conservative substitutions can be made in view of the table below.

TABLE 1
CONSERVATIVE AMINO ACID REPLACEMENTS
For Amino Acid	Code	Replace with any of
Alanine	A	D-Ala, Gly, beta-Ala, L-Cys, D-Cys
Arginine	R	D-Arg, Lys, D-Lys, homo-Arg, D-homo-Arg,
		Met, Ile, D-Met, D-Ile, Orn, D-Orn
Asparagine	N	D-Asn, Asp, D-Asp, Glu, D-Glu, Gln, D-Gln
Aspartic Acid	D	D-Asp, D-Asn, Asn, Glu, D-Glu, Gln, D-Gln
Cysteine	C	D-Cys, S-Me-Cys, Met, D-Met, Thr, D-Thr
Glutamine	Q	D-Gln, Asn, D-Asn, Glu, D-Glu, Asp, D-Asp
Glutamic Acid	E	D-Glu, D-Asp, Asp, Asn, D-Asn, Gln, D-Gln
Glycine	G	Ala, D-Ala, Pro, D-Pro, β-Ala, Acp
Isoleucine	I	D-Ile, Val, D-Val, Leu, D-Leu, Met, D-Met
Leucine	L	D-Leu, Val, D-Val, Leu, D-Leu, Met, D-Met
Lysine	K	D-Lys, Arg, D-Arg, homo-Arg, D-homo-Arg,
		Met, D-Met, Ile, D-Ile, Orn, D-Orn
Methionine	M	D-Met, S-Me-Cys, Ile, D-Ile, Leu, D-Leu,
		Val, D-Val
Phenylalanine	F	D-Phe, Tyr, D-Thr, L-Dopa, His, D-His, Trp,
		D-Trp,
		Trans-3,4, or 5-phenylproline, cis-3,4, or 5-
		phenylproline
Proline	P	D-Pro, L-I-thioazolidine-4-carboxylic acid,
		D-or L-1-oxazolidine-4-carboxylic acid
Serine	S	D-Ser, Thr, D-Thr, allo-Thr, Met, D-Met,
		Met(O), D-Met(O), L-Cys, D-Cys
Threonine	T	D-Thr, Ser, D-Ser, allo-Thr, Met, D-Met,
		Met(O), D-Met(O), Val, D-Val
Tyrosine	Y	D-Tyr, Phe, D-Phe, L-Dopa, His, D-His
Valine	V	D-Val, Leu, D-Leu, Ile, D-Ile, Met, D-Met

Other analogs within the invention are those with modifications which increase peptide stability; such analogs may contain, for example, one or more non-peptide bonds (which replace the peptide bonds) in the peptide sequence. Also included are: analogs that include residues other than naturally occurring L-amino acids, e.g., D-amino acids or non-naturally occurring or synthetic amino acids, e.g., β or γ amino acids; and cyclic analogs.

As used herein, the term “fragment”, as applied to an S. pneumoniae analog, will ordinarily be at least about 20 residues, more typically at least about 40 residues, preferably at least about 60 residues in length. Fragments of S. pneumoniae polypeptides can be generated by methods known to those skilled in the art. The ability of a candidate fragment to exhibit a biological activity of S. pneumoniae polypeptide can be assessed by methods known to those skilled in the art as described herein. Also included are S. pneumoniae polypeptides containing residues that are not required for biological activity of the peptide or that result from alternative mRNA splicing or alternative protein processing events.

An “immunogenic component” as used herein is a moiety, such as an S. pneumoniae polypeptide, analog or fragment thereof, that is capable of eliciting a humoral and/or cellular immune response in a host animal.

An “antigenic component” as used herein is a moiety, such as an S. pneumoniae polypeptide, analog or fragment thereof, that is capable of binding to a specific antibody with sufficiently high affinity to form a detectable antigen-antibody complex.

The term “antibody” as used herein is intended to include fragments thereof which are specifically reactive with S. pneumoniae polypeptides.

As used herein, the term “cell-specific promoter” means a DNA sequence that serves as a promoter, i.e., regulates expression of a selected DNA sequence operably linked to the promoter, and which effects expression of the selected DNA sequence in specific cells of a tissue. The term also covers so-called “leaky” promoters, which regulate expression of a selected DNA primarily in one tissue, but cause expression in other tissues as well.

Misexpression, as used herein, refers to a non-wild type pattern of gene expression. It includes: expression at non-wild type levels, i.e., over or under expression; a pattern of expression that differs from wild type in terms of the time or stage at which the gene is expressed, e.g., increased or decreased expression (as compared with wild type) at a predetermined developmental period or stage; a pattern of expression that differs from wild type in terms of decreased expression (as compared with wild type) in a predetermined cell type or tissue type; a pattern of expression that differs from wild type in terms of the splicing size, amino acid sequence, post-translational modification, or biological activity of the expressed polypeptide; a pattern of expression that differs from wild type in terms of the effect of an environmental stimulus or extracellular stimulus on expression of the gene, e.g., a pattern of increased or decreased expression (as compared with wild type) in the presence of an increase or decrease in the strength of the stimulus.

As used herein, “host cells” and other such terms denoting microorganisms or higher eukaryotic cell lines cultured as unicellular entities refers to cells which can become or have been used as recipients for a recombinant vector or other transfer DNA, and include the progeny of the original cell which has been transfected. It is understood by individuals skilled in the art that the progeny of a single parental cell may not necessarily be completely identical in genomic or total DNA compliment to the original parent, due to accident or deliberate mutation.

As used herein, the term “control sequence” refers to a nucleic acid having a base sequence which is recognized by the host organism to effect the expression of encoded sequences to which they are ligated. The nature of such control sequences differs depending upon the host organism; in prokaryotes, such control sequences generally include a promoter, ribosomal binding site, terminators, and in some cases operators; in eukaryotes, generally such control sequences include promoters, terminators and in some instances, enhancers. The term control sequence is intended to include at a minimum, all components whose presence is necessary for expression, and may also include additional components whose presence is advantageous, for example, leader sequences.

As used herein, the term “operably linked” refers to sequences joined or ligated to function in their intended manner. For example, a control sequence is operably linked to coding sequence by ligation in such a way that expression of the coding sequence is achieved under conditions compatible with the control sequence and host cell.

The “metabolism” of a substance, as used herein, means any aspect of the expression, function, action, or regulation of the substance. The metabolism of a substance includes modifications, e.g., covalent or non-covalent modifications of the substance. The metabolism of a substance includes modifications, e.g., covalent or non-covalent modification, the substance induces in other substances. The metabolism of a substance also includes changes in the distribution of the substance. The metabolism of a substance includes changes the substance induces in the distribution of other substances.

A “sample” as used herein refers to a biological sample, such as, for example, tissue or fluid isloated from an individual (including without limitation plasma, serum, cerebrospinal fluid, lymph, tears, saliva and tissue sections) or from in vitro cell culture constituents, as well as samples from the environment.

Technical and scientific terms used herein have the meanings commonly understood by one of ordinary skill in the art to which the present invention pertains, unless otherwise defined. Reference is made herein to various methodologies known to those of skill in the art. Publications and other materials setting forth such known methodologies to which reference is made are incorporated herein by reference in their entireties as though set forth in full. The practice of the invention will employ, unless otherwise indicated, conventional techniques of chemistry, molecular biology, microbiology, recombinant DNA, and immunology, which are within the skill of the art. Such techniques are explained fully in the literature. See e.g., Sambrook, Fritsch, and Maniatis, Molecular Cloning; Laboratory Manual 2nd ed. (1989); DNA Cloning , Volumes I and II (D. N Glover ed. 1985); Oligonucleotide Synthesis (M. J. Gait ed, 1984); Nucleic Acid Hybridization (B. D. Hames & S. J. Higgins eds. 1984); the series, Methods in Enzymoloqy (Academic Press, Inc.), particularly Vol. 154 and Vol. 155 (Wu and Grossman, eds.); PCR - A Practical Approach (McPherson, Quirke, and Taylor, eds., 1991); Immunology , 2d Edition, 1989, Roitt et al., C. V. Mosby Company, and New York; Advanced Immunology , 2d Edition, 1991, Male et al., Grower Medical Publishing, New York.; DNA Cloning: A Practical Approach , Volumes I and II, 1985 (D. N. Glover ed.); Oligonucleotide Synthesis , 1984, (M. L. Gait ed); Transcription and Translation , 1984 (Hames and Higgins eds.); Animal Cell Culture , 1986 (R. I. Freshney ed.); Immobilized Cells and Enzymes , 1986 (IRL Press); Perbal, 1984 , A Practical Guide to Molecular Cloning ; and Gene Transfer Vectors for Mammalian Cells , 1987 (J. H. Miller and M. P. Calos eds., Cold Spring Harbor Laboratory);

Any suitable materials and/or methods known to those of skill can be utilized in carrying out the present invention: however preferred materials and/or methods are described. Materials, reagents and the like to which reference is made in the following description and examples are obtainable from commercial sources, unless otherwise noted.

S. pneumoniae Genomic Sequence

This invention provides nucleotide sequences of the genome of S. pneumoniae which thus comprises a DNA sequence library of S. pneumoniae genomic DNA. The detailed description that follows provides nucleotide sequences of S. pneumoniae , and also describes how the sequences were obtained and how ORFs and protein-coding sequences were identified. Also described are methods of using the disclosed S. pneumoniae sequences in methods including diagnostic and therapeutic applications. Furthermore, the library can be used as a database for identification and comparison of medically important sequences in this and other strains of S. pneumoniae.

To determine the genomic sequence of S. pneumoniae , DNA was isolated from strain 14453 of S. pneumoniae and mechanically sheared by nebulization to a median size of 2 kb. Following size fractionation by gel electrophoresis, the fragments were blunt-ended, ligated to adapter oligonucleotides, and cloned into each of 20 different pMPX vectors (Rice et al., abstracts of Meeting of Genome Mapping and Sequencing, Cold Spring Harbor, N.Y., 5/11-5/15, 1994, p. 225) and the PUC19 vector to construct a series of “shotgun” subclone libraries.

DNA sequencing was achieved using two sequencing methods. The first method used multiplex sequencing procedures essentially as disclosed in Church et al., 1988 , Science 240:185; U.S. Pat. Nos. 4,942,124 and 5,149,625). DNA was extracted from pooled cultures and subjected to chemical or enzymatic sequencing. Sequencing reactions were resolved by electrophoresis, and the products were transferred and covalently bound to nylon membranes. Finally, the membranes were sequentially hybridized with a series of labelled oligonucleotides complimentary to “tag” sequences present in the different shotgun cloning vectors. In this manner, a large number of sequences could be obtained from a single set of sequencing reactions. The remainder of the sequencing was performed on AB1377 automated DNA sequencers. The cloning and sequencing procedures are described in more detail in the Exemplification.

Individual sequence reads were assembled using PHRAP (P. Green, Abstracts of DOE Human Genome Program Contractor-Grantee Workshop V, January 1996, p.157). The average contig length was about 3-4 kb.

A variety of approaches are used to order the contigs so as to obtain a continuous sequence representing the entire S. pneumoniae genome. Synthetic oligonucleotides are designed that are complementary to sequences at the end of each contig. These oligonucleotides may be hybridized to libaries of S. pneumoniae genomic DNA in, for example, lambda phage vectors or plasmid vectors to identify clones that contain sequences corresponding to the junctional regions between individual contigs. Such clones are then used to isolate template DNA and the same oligonucleotides are used as primers in polymerase chain reaction (PCR) to amplify junctional fragments, the nucleotide sequence of which is then determined.

The S. pneumoniae sequences were analyzed for the presence of open reading frames (ORFs) comprising at least 180 nucleotides. As a result of the analysis of ORFs based on stop-to-stop codon reads, it should be understood that these ORFs may not correspond to the ORF of a naturally-occurring S. pneumoniae polypeptide. These ORFs may contain start codons which indicate the initiation of protein synthesis of a naturally-occurring S. pneumoniae polypeptide. Such start codons within the ORFs provided herein can be identified by those of ordinary skill in the relevant art, and the resulting ORF and the encoded S. pneumoniae polypeptide is within the scope of this invention. For example, within the ORFs a codon such as AUG or GUG (encoding methionine or valine) which is part of the initiation signal for protein synthesis can be identified and the portion of an ORF to corresponding to a naturally-occurring S. pneumoniae polypeptide can be recognized. The predicted coding regions were defined by evaluating the coding potential of such sequences with the program GENEMARK™ (Borodovsky and Mclninch, 1993 , Comp . 17:123).

Each predicted ORF amino acid sequence was compared with all sequences found in current GENBANK, SWISS-PROT, and PIR databases using the BLAST algorithm. BLAST identifies local alignments occurring by chance between the ORF sequence and the sequence in the databank (Altschal et al., 1990, L Mol. Biol. 215:403-410). Homologous ORFs (probabilities less than 10 −5 by chance) and ORF's that are probably-non-homologous (probabilities greater than 10 −5 by chance) but have good codon usage were identified. Both homologous, sequences and non-homologous sequences with good codon usage, are likely to encode proteins and are encompassed by the invention.

S. pneumoniae Nucleic Acids

The nucleic acids of this invention may be obtained directly from the DNA of the above referenced S. pneumoniae strain by using the polymerase chain reaction (PCR). See “ PCR, A Practical Approach ” (McPherson, Quirke, and Taylor, eds., IRL Press, Oxford, UK, 1991) for details about the PCR. High fidelity PCR can be used to ensure a faithful DNA copy prior to expression. In addition, the authenticity of amplified products can be verified by conventional sequencing methods. Clones carrying the desired sequences described in this invention may also be obtained by screening the libraries by means of the PCR or by hybridization of synthetic oligonucleotide probes to filter lifts of the library colonies or plaques as known in the art (see, e.g., Sambrook et al., Molecular Cloning, A Laboratory Manual 2nd edition, 1989, Cold Spring Harbor Press, NY).

It is also possible to obtain nucleic acids encoding S. pneumoniae polypeptides from a cDNA library in accordance with protocols herein described. A cDNA encoding an S. pneumoniae polypeptide can be obtained by isolating total mRNA from an appropriate strain. Double stranded cDNAs can then be prepared from the total mRNA. Subsequently, the cDNAs can be inserted into a suitable plasmid or viral (e.g., bacteriophage) vector using any one of a number of known techniques. Genes encoding S. pneumoniae polypeptides can also be cloned using established polymerase chain reaction techniques in accordance with the nucleotide sequence information provided by the invention. The nucleic acids of the invention can be DNA or RNA. Preferred nucleic acids of the invention are contained in the Sequence Listing.

The nucleic acids of the invention can also be chemically synthesized using standard techniques. Various methods of chemically synthesizing polydeoxynucleotides are known, including solid-phase synthesis which, like peptide synthesis, has been fully automated in commercially available DNA synthesizers (See e.g., Itakura et al. U.S. Pat. No. 4,598,049; Caruthers et al. U.S. Pat. No. 4,458,066; and Itakura U.S. Pat. Nos. 4,401,796 and 4,373,071, incorporated by reference herein).

Nucleic acids isolated or synthesized in accordance with features of the present invention are useful, by way of example, without limitation, as probes, primers, capture ligands, antisense genes and for developing expression systems for the synthesis of proteins and peptides corresponding to such sequences. As probes, primers, capture ligands and antisense agents, the nucleic acid normally consists of all or part (approximately twenty or more nucleotides for specificity as well as the ability to form stable hybridization products) of the nucleic acids of the invention contained in the Sequence Listing. These uses are described in further detail below.

Probes

A nucleic acid isolated or synthesized in accordance with the sequence of the invention contained in the Sequence Listing can be used as a probe to specifically detect S. pneumoniae . With the sequence information set forth in the present application, sequences of twenty or more nucleotides are identified which provide the desired inclusivity and exclusivity with respect to S. pneumoniae , and extraneous nucleic acids likely to be encountered during hybridization conditions. More preferably, the sequence will comprise at least twenty to thirty nucleotides to convey stability to the hybridization product formed between the probe and the intended target molecules.

Sequences larger than 1000 nucleotides in length are difficult to synthesize but can be generated by recombinant DNA techniques. Individuals skilled in the art will readily recognize that the nucleic acids, for use as probes, can be provided with a label to facilitate detection of a hybridization product.

Nucleic acid isolated and synthesized in accordance with the sequence of the invention contained in the Sequence Listing can also be useful as probes to detect homologous regions (especially homologous genes) of other Streptococcus species using appropriate stringency hybridization conditions as described herein.

Capture Ligand

For use as a capture ligand, the nucleic acid selected in the manner described above with respect to probes, can be readily associated with a support. The manner in which nucleic acid is associated with supports is well known. Nucleic acid having twenty or more nucleotides in a sequence of the invention contained in the Sequence Listing have utility to separate S. pneumoniae nucleic acid from the nucleic acid of each other and other organisms. Nucleic acid having twenty or more nucleotides in a sequence of the invention contained in the Sequence Listing can also have utility to separate other Streptococcus species from each other and from other organisms. Preferably, the sequence will comprise at least twenty nucleotides to convey stability to the hybridization product formed between the probe and the intended target molecules. Sequences larger than 1000 nucleotides in length are difficult to synthesize but can be generated by recombinant DNA techniques.

Primers

Nucleic acid isolated or synthesized in accordance with the sequences described herein have utility as primers for the amplification of S. pneumoniae nucleic acid. These nucleic acids may also have utility as primers for the amplification of nucleic acids in other Streptococcus species. With respect to polymerase chain reaction (PCR) techniques, nucleic acid sequences of >10-15 nucleotides of the invention contained in the Sequence Listing have utility in conjunction with suitable enzymes and reagents to create copies of S. pneumoniae nucleic acid. More preferably, the sequence will comprise twenty or more nucleotides to convey stability to the hybridization product formed between the primer and the intended target molecules. Binding conditions of primers greater than 100 nucleotides are more difficult to control to obtain specificity. High fidelity PCR can be used to ensure a faithful DNA copy prior to expression. In addition, amplified products can be checked by conventional sequencing methods.

The copies can be used in diagnostic assays to detect specific sequences, including genes from S. pneumoniae and/or other Streptococcus species. The copies can also be incorporated into cloning and expression vectors to generate polypeptides corresponding to the nucleic acid synthesized by PCR, as is described in greater detail herein.

Antisense

Nucleic acid or nucleic acid-hybridizing derivatives isolated or synthesized in accordance with the sequences described herein have utility as antisense agents to prevent the expression of S. pneumoniae genes. These sequences also have utility as antisense agents to prevent expression of genes of other Streptococcus species.

In one embodiment, nucleic acid or derivatives corresponding to S. pneumoniae nucleic acids is loaded into a suitable carrier such as a liposome or bacteriophage for introduction into bacterial cells. For example, a nucleic acid having twenty or more nucleotides is capable of binding to bacteria nucleic acid or bacteria messenger RNA. Preferably, the antisense nucleic acid is comprised of 20 or more nucleotides to provide necessary stability of a hybridization product of non-naturally occurring nucleic acid and bacterial nucleic acid and/or bacterial messenger RNA. Nucleic acid having a sequence greater than 1000 nucleotides in length is difficult to synthesize but can be generated by recombinant DNA techniques. Methods for loading antisense nucleic acid in liposomes is known in the art as exemplified by U.S. Pat. No. 4,241,046 issued Dec. 23, 1980 to Papahadjopoulos et al.

The present invention encompasses isolated polypeptides and nucleic acids derived from S. pneumoniae that are useful as reagents for diagnosis of bacterial infection, components of effective antibacterial vaccines, and/or as targets for antibacterial drugs, including anti S. pneumoniae drugs.

Expression of S. pneumoniae Nucleic Acids

Table 2 provides a list of open reading frames (ORFs) in both strands. An ORF is a region of nucleic acid which encodes a polypeptide. This region may represent a portion of a coding sequence or a total sequence and was determined from stop to stop codons. The first column lists the ORF designation. The second and third columns list the SEQ ID numbers for the nucleic acid and amino acid sequences corresponding to each ORF, respectively. The fourth and fifth columns list the length of the nucleic acid ORF and the length of the amino acid ORF, respectively. The nucleotide sequence corresponding to each ORF begins at the first nucleotide immediately following a stop codon and ends at the nucleotide immediately preceding the next downstream stop codon in the same reading frame. It will be recognized by one skilled in the art that the natural translation initiation sites will correspond to ATG, GTG, or TTG codons located within the ORFs. The natural initiation sites depend not only on the sequence of a start codon but also on the context of the DNA sequence adjacent to the start codon. Usually, a recognizable ribosome binding site is found within 20 nucleotides upstream from the initiation codon. In some cases where genes are translationally coupled and coordinately expressed together in “operons”, ribosome binding sites are not present, but the initiation codon of a downstream gene may occur very close to, or overlap, the stop codon of the an upstream gene in the same operon. The correct start codons can be generally identified without undue experimentation because only a few codons need be tested. It is recognized that the translational machinery in bacteria initiates all polypeptide chains with the amino acid methionine, regardless of the sequence of the start codon. In some cases, polypeptides are post-translationally modified, resulting in an N-terminal amino acid other than methionine in vivo. The sixth and seventh columns provide metrics for assessing the likelihood of the homology match (determined by the BLASTP2 algorithm), as is known in the art, to the genes indicated in the eighth column. Specifically, the sixth column represents the “score” for the match (a higher score is a better match), and the seventh column represents the “P-value” for the match (the probability that such a match could have occurred by chance; the lower the value, the more likely the match is valid). If a BLASTP2 score of less than 46 was obtained, no value is reported in the table the “P-value”. The eighth column provides, where available, the accession number (AC) or the Swissprot accession number (SP), the locus name (LN), Superfamily Classification (CL), the Organism (OR), Source of variant (SR), E.C. number (EC), the gene name (GN), the product name (PN), the Function Description (FN), the Map Position (MP), Left End (LE), Right End (RE), Coding Direction (DI), the Database from which the sequence originates (DB), and the description (DE) or notes (NT) for each ORF. This information allows one of ordinary skill in the art to determine a potential use for each identified coding sequence and, as a result, allows to use the polypeptides of the present invention for commercial and industrial purposes.

Using the information provided in SEQ ID NO: 1-SEQ ID NO: 2603 and in Table 2 together with routine cloning and sequencing methods, one of ordinary skill in the art will be able to clone and sequence all the nucleic acid fragments of interest including open reading frames (ORFs) encoding a large variety proteins of S. pneumoniae.

Nucleic acid isolated or synthesized in accordance with the sequences described herein have utility to generate polypeptides. The nucleic acid of the invention exemplified in SEQ ID NO: 1-SEQ ID NO: 2603 and in Table 2 or fragments of said nucleic acid encoding active portions of S. Pneumoniae polypeptides can be cloned into suitable vectors or used to isolate nucleic acid. The isolated nucleic acid is combined with suitable DNA linkers and cloned into a suitable vector.

The function of a specific gene or operon can be ascertained by expression in a bacterial strain under conditions where the activity of the gene product(s) specified by the gene or operon in question can be specifically measured. Alternatively, a gene product may be produced in large quantities in an expressing strain for use as an antigen, an industrial reagent, for structural studies, etc. This expression can be accomplished in a mutant strain which lacks the activity of the gene to be tested, or in a strain that does not produce the same gene product(s). This includes, but is not limited to, Eucaryotic species such as the yeast Saccharomyces cerevisiae , Methanobacterium strains or other Archaea, and Eubacteria such as E. coli, B. Subtilis, S. Aureus, S. Pneumonia or Pseudomonas putida . In some cases the expression host will utilize the natural S. pneumoniae promoter whereas in others, it will be necessary to drive the gene with a promoter sequence derived from the expressing organism (e.g., an E. coli beta-galactosidase promoter for expression in E. coli ).

To express a gene product using the natural S. pneumoniae promoter, a procedure such as the following can be used. A restriction fragment containing the gene of interest, together with its associated natural promoter element and regulatory sequences (identified using the DNA sequence data) is cloned into an appropriate recombinant plasmid containing an origin of replication that functions in the host organism and an appropriate selectable marker. This can be accomplished by a number of procedures known to those skilled in the art. It is most preferably done by cutting the plasmid and the fragment to be cloned with the same restriction enzyme to produce compatible ends that can be ligated to join the two pieces together. The recombinant plasmid is introduced into the host organism by, for example, electroporation and cells containing the recombinant plasmid are identified by selection for the marker on the plasmid. Expression of the desired gene product is detected using an assay specific for that gene product.

In the case of a gene that requires a different promoter, the body of the gene (coding sequence) is specifically excised and cloned into an appropriate expression plasmid. This subcloning can be done by several methods, but is most easily accomplished by PCR amplification of a specific fragment and ligation into an expression plasmid after treating the PCR product with a restriction enzyme or exonuclease to create suitable ends for cloning.

A suitable host cell for expression of a gene can be any procaryotic or eucaryotic cell. For example, an S. pneumoniae polypeptide can be expressed in bacterial cells such as E. coli or B. subtilis , insect cells (baculovirus), yeast, or mammalian cells such as Chinese hamster ovary cell (CHO). Other suitable host cells are known to those skilled in the art.

Expression in eucaryotic cells such as mammalian, yeast, or insect cells can lead to partial or complete glycosylation and/or formation of relevant inter- or intra-chain disulfide bonds of a recombinant peptide product. Examples of vectors for expression in yeast S. cerivisae include pYepSec1 (Baldari. et al., (1987) Embo J . 6:229-234), pMFa (Kurjan and Herskowitz, (1982) Cell 30:933-943), pJRY88 (Schultz et al., (1987) Gene 54:113-123), and pYES2 (Invitrogen Corporation, San Diego, Calif.). Baculovirus vectors available for expression of proteins in cultured insect cells (SF 9 cells) include the pAc series (Smith et al., (1983) Mol. Cell Biol . 3:2156-2165) and the pVL series (Lucklow, V. A., and Summers, M. D., (1989) Virology 170:31-39). Generally, COS cells (Gluzman, Y., (1981) Cell 23:175-182) are used in conjunction with such vectors as pCDM 8 (Aruffo, A. and Seed, B., (1987) Proc. Natl. Acad Sci. USA 84:8573-8577) for transient amplification/expression in mammalian cells, while CHO (dhfr − C hinese H amster O vary) cells are used with vectors such as pMT2PC (Kaufman et al. (1987), EMBO J . 6:187-195) for stable amplification/expression in mammalian cells. Vector DNA can be introduced into mammalian cells via conventional techniques such as calcium phosphate or calcium chloride co-precipitation, DEAE-dextran-mediated transfection, or electroporation. Suitable methods for transforming host cells can be found in Sambrook et al. ( Molecular Cloning: A Laboratory Manual , 2nd Edition, Cold Spring Harbor Laboratory press (1989)), and other laboratory textbooks.

Expression in procaryotes is most often carried out in E. coli with either fusion or non-fusion inducible expression vectors. Fusion vectors usually add a number of NH 2 terminal amino acids to the expressed target gene. These NH 2 terminal amino acids often are referred to as a reporter group or an affinity purification group. Such reporter groups usually serve two purposes: 1) to increase the solubility of the target recombinant protein; and 2) to aid in the purification of the target recombinant protein by acting as a ligand in affinity purification. Often, in fusion expression vectors, a proteolytic cleavage site is introduced at the junction of the reporter group and the target recombinant protein to enable separation of the target recombinant protein from the reporter group subsequent to purification of the fusion protein. Such enzymes, and their cognate recognition sequences, include Factor Xa, thrombin and enterokinase. Typical fusion expression vectors include pGEX (Amrad Corp., Melbourne, Australia), pMAL (New England Biolabs, Beverly, Mass.) and pRIT5 (Pharmacia, Piscataway, N.J.) which fuse glutathione S-transferase, maltose E binding protein, or protein A, respectively, to the target recombinant protein. A preferred reporter group is poly(His), which may be fused to the amino or carboxy terminus of the protein and which renders the recombinant fusion protein easily purifiable by metal chelate chromatography.

Inducible non-fusion expression vectors include pTrc (Amann et al., (1988) Gene 69:301-315) and pET11d (Studier et al., Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Calif. (1990) 60-89). While target gene expression relies on host RNA polymerase transcription from the hybrid trp-lac fusion promoter in pTrc, expression of target genes inserted into pET11d relies on transcription from the T7 gn10-lac 0 fusion promoter mediated by coexpressed viral RNA polymerase (T7 gn1). This viral polymerase is supplied by host strains BL21(DE3) or HMS174(DE3) from a resident x prophage harboring a T7 gn1 under the transcriptional control of the lacUV 5 promoter.

For example, a host cell transfected with a nucleic acid vector directing expression of a nucleotide sequence encoding an S. pneumoniae polypeptide can be cultured under appropriate conditions to allow expression of the polypeptide to occur. The polypeptide may be secreted and isolated from a mixture of cells and medium containing the peptide. Alternatively, the polypeptide may be retained cytoplasmically and the cells harvested, lysed and the protein isolated. A cell culture includes host cells, media and other byproducts. Suitable media for cell culture are well known in the art. Polypeptides of the invention can be isolated from cell culture medium, host cells, or both using techniques known in the art for purifying proteins including ion-exchange chromatography, gel filtration chromatography, ultrafiltration, electrophoresis, and immunoaffinity purification with antibodies specific for such polypeptides.

Additionally, in many situations, polypeptides can be produced by chemical cleavage of a native protein (e.g., tryptic digestion) and the cleavage products can then be purified by standard techniques.

In the case of membrane bound proteins, these can be isolated from a host cell by contacting a membrane-associated protein fraction with a detergent forming a solubilized complex, where the membrane-associated protein is no longer entirely embedded in the membrane fraction and is solubilized at least to an extent which allows it to be chromatographically isolated from the membrane fraction. Several different criteria are used for choosing a detergent suitable for solubilizing these complexes. For example, one property considered is the ability of the detergent to solubilize the S. pneumoniae protein within the membrane fraction at minimal denaturation of the membrane-associated protein allowing for the activity or functionality of the membrane-associated protein to return upon reconstitution of the protein. Another property considered when selecting the detergent is the critical micelle concentration (CMC) of the detergent in that the detergent of choice preferably has a high CMC value allowing for ease of removal after reconstitution. A third property considered when selecting a detergent is the hydrophobicity of the detergent. Typically, membrane-associated proteins are very hydrophobic and therefore detergents which are also hydrophobic, e.g., the triton series, would be useful for solubilizing the hydrophobic proteins. Another property important to a detergent can be the capability of the detergent to remove the i. pneumoniae protein with minimal protein-protein interaction facilitating further purification. A fifth property of the detergent which should be considered is the charge of the detergent. For example, if it is desired to use ion exchange resins in the purification process then preferably detergent should be an uncharged detergent. Chromatographic techniques which can be used in the final purification step are known in the art and include hydrophobic interaction, lectin affinity, ion exchange, dye affinity and immunoaffinity.

One strategy to maximize recombinant S. pneumoniae peptide expression in E. coli is to express the protein in a host bacteria with an impaired capacity to proteolytically cleave the recombinant protein (Gottesman, S., Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Calif. (1990) 119-128). Another strategy would be to alter the nucleic acid encoding an S. pneumoniae peptide to be inserted into an expression vector so that the individual codons for each amino acid would be those preferentially utilized in highly expressed E. coli proteins (Wada et al., (1992) Nuc. Acids Res . 20:2111-2118). Such alteration of nucleic acids of the invention can be carried out by standard DNA synthesis techniques.

The nucleic acids of the invention can also be chemically synthesized using standard techniques. Various methods of chemically synthesizing polydeoxynucleotides are known, including solid-phase synthesis which, like peptide synthesis, has been fully automated in commercially available DNA synthesizers (See, e.g., Itakura et al. U.S. Pat. No. 4,598,049; Caruthers et al. U.S. Pat. No. 4,458,066; and Itakura U.S. Pat. Nos. 4,401,796 and 4,373,071, incorporated by reference herein).

The present invention provides a library of S. pneumoniae -derived nucleic acid sequences. The libraries provide probes, primers, and markers which can be used as markers in epidemiological studies. The present invention also provides a library of S. pneumoniae -derived nucleic acid sequences which comprise or encode targets for therapeutic drugs.

Nucleic acids comprising any of the sequences disclosed herein or sub-sequences thereof can be prepared by standard methods using the nucleic acid sequence information provided in SEQ ID NO: 1-SEQ ID NO: 2603. For example, DNA can be chemically synthesized using, e.g., the phosphoramidite solid support method of Matteucci et al., 1981 , J. Am. Chem. Soc . 103:3185, the method of Yoo et al., 1989 , J. Biol. Chem . 764:17078, or other well known methods. This can be done by sequentially linking a series of oligonucleotide cassettes comprising pairs of synthetic oligonucleotides, as described below.

Of course, due to the degeneracy of the genetic code, many different nucleotide sequences can encode polypeptides having the amino acid sequences defined by SEQ ID NO: 2604-SEQ ID NO: 5206 or sub-sequences thereof. The codons can be selected for optimal expression in prokaryotic or eukaryotic systems. Such degenerate variants are also encompassed by this invention.

Insertion of nucleic acids (typically DNAs) encoding the polypeptides of the invention into a vector is easily accomplished when the termini of both the DNAs and the vector comprise compatible restriction sites. If this cannot be done, it may be necessary to modify the termini of the DNAs and/or vector by digesting back single-stranded DNA overhangs generated by restriction endonuclease cleavage to produce blunt ends, or to achieve the same result by filling in the single-stranded termini with an appropriate DNA polymerase.

Alternatively, any site desired may be produced, e.g., by ligating nucleotide sequences (linkers) onto the termini. Such linkers may comprise specific oligonucleotide sequences that define desired restriction sites. Restriction sites can also be generated by the use of the polymerase chain reaction (PCR). See, e.g., Saiki et al., 1988 , Science 239:48. The cleaved vector and the DNA fragments may also be modified if required by homopolymeric tailing.

In certain embodiments, the invention encompasses isolated nucleic acid fragments comprising all or part of the individual nucleic acid sequences disclosed herein. The fragments are at least about 8 nucleotides in length, preferably at least about 12 nucleotides in length, and most preferably at least about 15-20 nucleotides in length.

The nucleic acids may be isolated directly from cells. Alternatively, the polymerase chain reaction (PCR) method can be used to produce the nucleic acids of the invention, using either chemically synthesized strands or genomic material as templates. Primers used for PCR can be synthesized using the sequence information provided herein and can further be designed to introduce appropriate new restriction sites, if desirable, to facilitate incorporation into a given vector for recombinant expression.

The nucleic acids of the present invention may be flanked by natural S. pneumoniae regulatory sequences, or may be associated with heterologous sequences, including promoters, enhancers, response elements, signal sequences, polyadenylation sequences, introns, 5′- and 3′-noncoding regions, and the like. The nucleic acids may also be modified by many means known in the art. Non-limiting examples of such modifications include methylation, “caps”, substitution of one or more of the naturally occurring nucleotides with an analog, internucleotide modifications such as, for example, those with uncharged linkages (e.g., methyl phosphonates, phosphotriesters, phosphoroamidates, carbamates, etc.) and with charged linkages (e.g., phosphorothioates, phosphorodithioates, etc.). Nucleic acids may contain one or more additional covalently linked moieties, such as, for example, proteins (e.g., nucleases, toxins, antibodies, signal peptides, poly-L-lysine, etc.), intercalators (e.g., acridine, psoralen, etc.), chelators (e.g., metals, radioactive metals, iron, oxidative metals, etc.), and alkylators. PNAs are also included. The nucleic acid may be derivatized by formation of a methyl or ethyl phosphotriester or an alkyl phosphoramidate linkage. Furthermore, the nucleic acid sequences of the present invention may also be modified with a label capable of providing a detectable signal, either directly or indirectly. Exemplary labels include radioisotopes, fluorescent molecules, biotin, and the like.

The invention also provides nucleic acid vectors comprising the disclosed S. pneumoniae -derived sequences or derivatives or fragments thereof. A large number of vectors, including plasmid and fungal vectors, have been described for replication and/or expression in a variety of eukaryotic and prokaryotic hosts, and may be used for gene therapy as well as for simple cloning or protein expression.

The encoded S. pneumoniae polypeptides may be expressed by using many known vectors, such as pUC plasmids, pET plasmids (Novagen, Inc., Madison, Wis.), or pRSET or pREP (Invitrogen, San Diego, Calif.), and many appropriate host cells, using methods disclosed or cited herein or otherwise known to those skilled in the relevant art. The particular choice of vector/host is not critical to the practice of the invention.

Recombinant cloning vectors will often include one or more replication systems for cloning or expression, one or more markers for selection in the host, e.g. antibiotic resistance, and one or more expression cassettes. The inserted S. pneumoniae coding sequences may be synthesized by standard methods, isolated from natural sources, or prepared as hybrids, etc. Ligation of the S. pneumoniae coding sequences to transcriptional regulatory elements and/or to other amino acid coding sequences may be achieved by known methods. Suitable host cells may be transformed/transfected/infected as appropriate by any suitable method including electroporation, CaCl 2 mediated DNA uptake, fungal infection, microinjection, microprojectile, or other established methods.

Appropriate host cells include bacteria, archebacteria, fungi, especially yeast, and plant and animal cells, especially mammalian cells. Of particular interest are S. pneumoniae, E. coli, B. Subtilis, Saccharomyces cerevisiae, Saccharomyces carlsbergensis, Schizosaccharomyces pombi , SF9 cells, C129 cells, 293 cells, Neurospora, and CHO cells, COS cells, HeLa cells, and immortalized mammalian myeloid and lymphoid cell lines. Preferred replication systems include M13, Co1E1, SV40, baculovirus, lambda, adenovirus, and the like. A large number of transcription initiation and termination regulatory regions have been isolated and shown to be effective in the transcription and translation of heterologous proteins in the various hosts. Examples of these regions, methods of isolation, manner of manipulation, etc. are known in the art. Under appropriate expression conditions, host cells can be used as a source of recombinantly produced S. pneumoniae -derived peptides and polypeptides.

Advantageously, vectors may also include a transcription regulatory element (i.e., a promoter) operably linked to the S. pneumoniae portion. The promoter may optionally contain operator portions and/or ribosome binding sites. Non-limiting examples of bacterial promoters compatible with E. coli include: b-lactamase (penicillinase) promoter; lactose promoter; tryptophan (trp) promoter; araBAD (arabinose) operon promoter; lambda-derived P 1 promoter and N gene ribosome binding site; and the hybrid tac promoter derived from sequences of the trp and lac UV5 promoters. Non-limiting examples of yeast promoters include 3-phosphoglycerate kinase promoter, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) promoter, galactokinase (GAL1) promoter, galactoepimerase promoter, and alcohol dehydrogenase (ADH) promoter. Suitable promoters for mammalian cells include without limitation viral promoters such as that from Simian Virus 40 (SV40), Rous sarcoma virus (RSV), adenovirus (ADV), and bovine papilloma virus (BPV). Mammalian cells may also require terminator sequences, polyA addition sequences and enhancer sequences to increase expression. Sequences which cause amplification of the gene may also be desirable. Furthermore, sequences that facilitate secretion of the recombinant product from cells, including, but not limited to, bacteria, yeast, and animal cells, such as secretory signal sequences and/or prohormone pro region sequences, may also be included. These sequences are well described in the art.

Nucleic acids encoding wild-type or variant S. pneumoniae -derived polypeptides may also be introduced into cells by recombination events. For example, such a sequence can be introduced into a cell, and thereby effect homologous recombination at the site of an endogenous gene or a sequence with substantial identity to the gene. Other recombination-based methods such as nonhomologous recombinations or deletion of endogenous genes by homologous recombination may also be used.

The nucleic acids of the present invention find use as templates for the recombinant production of S. pneumoniae -derived peptides or polypeptides.

Identification and Use of S. pneumoniae Nucleic Acid Sequences

The disclosed S. pneumoniae polypeptide and nucleic acid sequences, or other sequences that are contained within ORFs, including complete protein-coding sequences, of which any of the disclosed S. pneumoniae -specific sequences forms a part, are useful as target components for diagnosis and/or treatment of S. pneumoniae -caused infection It will be understood that the sequence of an entire protein-coding sequence of which each disclosed nucleic acid sequence forms a part can be isolated and identified based on each disclosed sequence. This can be achieved, for example, by using an isolated nucleic acid encoding the disclosed sequence, or fragments thereof, to prime a sequencing reaction with genomic, S. pneumoniae DNA as template; this is followed by sequencing the amplified product. The isolated nucleic acid encoding the disclosed sequence, or fragments thereof, can also be hybridized to S. pneumoniae genomic libraries to identify clones containing additional complete segments of the protein-coding sequence of which the shorter sequence forms a part. Then, the entire protein-coding sequence, or fragments thereof, or nucleic acids encoding all or part of the sequence, or sequence-conservative or function-conservative variants thereof, may be employed in practicing the present invention.

Preferred sequences are those that are useful in diagnostic and/or therapeutic applications. Diagnostic applications include without limitation nucleic-acid-based and antibody-based methods for detecting bacterial infection. Therapeutic applications include without limitation vaccines, passive immunotherapy, and drug treatments directed against gene products that are both unique to bacteria and essential for growth and/or replication of bacteria.

Identification of Nucleic Acids Encoding Vaccine Components and Targets for Agents Effective Against S. pneumoniae

The disclosed S. pneumoniae genome sequence includes segments that direct the a, synthesis of ribonucleic acids and polypeptides, as well as origins of replication, promoters, other types of regulatory sequences, and intergenic nucleic acids. The invention encompasses nucleic acids encoding immunogenic components of vaccines and targets for agents effective against S. pneumoniae . Identification of said immunogenic components involved in the determination of the function of the disclosed sequences, which can be achieved using a variety of approaches. Non-limiting examples of these approaches are described briefly below.

Homology to Known Sequences:

Computer-assisted comparison of the disclosed S. pneumoniae sequences with previously reported sequences present in publicly available databases is useful for identifying functional S. pneumoniae nucleic acid and polypeptide sequences. It will be understood that protein-coding sequences, for example, may be compared as a whole, and that a high degree of sequence homology between two proteins (such as, for example, >80-90%) at the amino acid level indicates that the two proteins also possess some degree of functional homology, such as, for example, among enzymes involved in metabolism, DNA synthesis, or cell wall synthesis, and proteins involved in transport, cell division, etc. In addition, many structural features of particular protein classes have been identified and correlate with specific consensus sequences, such as, for example, binding domains for nucleotides, DNA, metal ions, and other small molecules; sites for covalent modifications such as phosphorylation, acylation, and the like; sites of protein:protein interactions, etc. These consensus sequences may be quite short and thus may represent only a fraction of the entire protein-coding sequence. Identification of such a feature in an S. pneumoniae sequence is therefore useful in determining the function of the encoded protein and identifying useful targets of antibacterial drugs.

Of particular relevance to the present invention are structural features that are common to secretory, transmembrane, and surface proteins, including secretion signal peptides and hydrophobic transmembrane domains. S. pneumoniae proteins identified as containing putative signal sequences and/or transmembrane domains are useful as immunogenic components of vaccines.

Targets for therapeutic drugs according to the invention include, but are not limited to, polypeptides of the invention, whether unique to S. pneumoniae or not, that are essential for growth and/or viability of S. pneumoniae under at least one growth condition. Polypeptides essential for growth and/or viability can be determined by examining the effect of deleting and/or disrupting the genes, i.e., by so-called gene “knockout”. Alternatively, genetic footprinting can be used (Smith et al., 1995 , Proc. Natl. Acad Sci. USA 92:5479-6433; Published International Application WO 94/26933; U.S. Pat. No. 5,612,180). Still other methods for assessing essentiality includes the ability to isolate conditional lethal mutations in the specific gene (e.g., temperature-sensitive mutations). Other useful targets for therapeutic drugs, which include polypeptides that are not essential for growth or viability per se but lead to loss of viability of the cell, can be used to target therapeutic agents to cells.

Strain-specific Sequences:

Because of the evolutionary relationship between different S. pneumoniae strains, it is believed that the presently disclosed S. pneumoniae sequences are useful for identifying, and/or discriminating between, previously known and new S. pneumoniae strains. It is believed that other S. pneumoniae strains will exhibit at least 70% sequence homology with the presently disclosed sequence. Systematic and routine analyses of DNA sequences derived from samples containing S. pneumoniae strains, and comparison with the present sequence allows for the identification of sequences that can be used to discriminate between strains, as well as those that are common to all S. pneumoniae strains. In one embodiment, the invention provides nucleic acids, including probes, and peptide and polypeptide sequences that discriminate between different strains of S. pneumoniae . Strain-specific components can also be identified functionally by their ability to elicit or react with antibodies that selectively recognize one or more S. pneumoniae strains.

In another embodiment, the invention provides nucleic acids, including probes, and peptide and polypeptide sequences that are common to all S. pneumoniae strains but are not found in other bacterial species.

S. pneumoniae Polypeptides

This invention encompasses isolated S. pneumoniae polypeptides encoded by the disclosed S. pneumoniae genomic sequences, including the polypeptides of the invention contained in the Sequence Listing. Polypeptides of the invention are preferably at least 5 amino acid residues in length. Using the DNA sequence information provided herein, the amino acid sequences of the polypeptides encompassed by the invention can be deduced using methods well-known in the art. It will be understood that the sequence of an entire nucleic acid encoding an S. pneumoniae polypeptide can be isolated and identified based on an ORF that encodes only a fragment of the cognate protein-coding region. This can be achieved, for example, by using the isolated nucleic acid encoding the ORF, or fragments thereof, to prime a polymerase chain reaction with genomic S. pneumoniae DNA as template; this is followed by sequencing the amplified product.

The polypeptides of the present invention, including function-conservative variants of the disclosed ORFs, may be isolated from wild-type or mutant S. pneumoniae cells, or from heterologous organisms or cells (including, but not limited to, bacteria, fungi, insect, plant, and mammalian cells) including S. pneumoniae into which a S. pneumoniae -derived protein-coding sequence has been introduced and expressed. Furthermore, the polypeptides may be part of recombinant fusion proteins.

S. pneumoniae polypeptides of the invention can be chemically synthesized using commercially automated procedures such as those referenced herein, including, without limitation, exclusive solid phase synthesis, partial solid phase methods, fragment condensation or classical solution synthesis. The polypeptides are preferably prepared by solid phase peptide synthesis as described by Merrifield, 1963 , J. Am. Chem. Soc . 85:2149. The synthesis is carried out with amino acids that are protected at the alpha-amino terminus. Trifunctional amino acids with labile side-chains are also protected with suitable groups to prevent undesired chemical reactions from occurring during the assembly of the polypeptides. The alpha-amino protecting group is selectively removed to allow subsequent reaction to take place at the amino-terminus. The conditions for the removal of the alpha-amino protecting group do not remove the side-chain protecting groups.

The alpha-amino protecting groups are those known to be useful in the art of stepwise polypeptide synthesis. Included are acyl type protecting groups, e.g., formyl, trifluoroacetyl, acetyl, aromatic urethane type protecting groups, e.g., benzyloxycarbonyl (Cbz), substituted benzyloxycarbonyl and 9-fluorenylmethyloxycarbonyl (Fmoc), aliphatic urethane protecting groups, e.g., t-butyloxycarbonyl (Boc), isopropyloxycarbonyl, cyclohexyloxycarbonyl, and alkyl type protecting groups, e.g., benzyl, triphenylmethyl. The preferred protecting group is Boc. The side-chain protecting groups for Tyr include tetrahydropyranyl, tert-butyl, trityl, benzyl, Cbz, 4-Br-Cbz and 2,6-dichlorobenzyl. The preferred side-chain protecting group for Tyr is 2,6-dichlorobenzyl. The side-chain protecting groups for Asp include benzyl, 2,6-dichlorobenzyl, methyl, ethyl and cyclohexyl. The preferred side-chain protecting group for Asp is cyclohexyl. The side-chain protecting groups for Thr and Ser include acetyl, benzoyl, trityl, tetrahydropyranyl, benzyl, 2,6-dichlorobenzyl and Cbz. The preferred protecting group for Thr and Ser is benzyl. The side-chain protecting groups for Arg include nitro, Tos, Cbz, adamantyloxycarbonyl and Boc. The preferred protecting group for Arg is Tos. The side-chain amino group of Lys may be protected with Cbz, 2-Cl-Cbz, Tos or Boc. The 2-Cl-Cbz group is the preferred protecting group for Lys.

The side-chain protecting groups selected must remain intact during coupling and not be removed during the deprotection of the amino-terminus protecting group or during coupling conditions. The side-chain protecting groups must also be removable upon the completion of synthesis, using reaction conditions that will not alter the finished polypeptide.

Solid phase synthesis is usually carried out from the carboxy-terminus by coupling the alpha-amino protected (side-chain protected) amino acid to a suitable solid support. An ester linkage is formed when the attachment is made to a chloromethyl or hydroxymethyl resin, and the resulting polypeptide will have a free carboxyl group at the C-terminus. Alternatively, when a benzhydrylamine or p-methylbenzhydrylamine resin is used, an amide bond is formed and the resulting polypeptide will have a carboxamide group at the C-terminus. These resins are commercially available, and their preparation was described by Stewart et al., 1984 , Solid Phase Peptide Synthesis (2nd Edition), Pierce Chemical Co., Rockford, Ill.

The C-terminal amino acid, protected at the side chain if necessary and at the alpha-amino group, is coupled to the benzhydrylamine resin using various activating agents including dicyclohexylcarbodiimide (DCC), N,N′-diisopropyl-carbodiimide and carbonyldiimidazole. Following the attachment to the resin support, the alpha-amino protecting group is removed using trifluoroacetic acid (TFA) or HCl in dioxane at a temperature between 0 and 25° C. Dimethylsulfide is added to the TFA after the introduction of methionine (Met) to suppress possible S-alkylation. After removal of the alpha-amino protecting group, the remaining protected amino acids are coupled stepwise in the required order to obtain the desired sequence.

Various activating agents can be used for the coupling reactions including DCC, N,N′-diisopropyl-carbodiimide, benzotriazol-1-yl-oxy-tris-(dimethylamino)-phosphonium hexa-fluorophosphate (BOP) and DCC-hydroxybenzotriazole (HOBt). Each protected amino acid is used in excess (>2.0 equivalents), and the couplings are usually carried out in N-methylpyrrolidone (NMP) or in DMF, CH 2 Cl 2 or mixtures thereof. The extent of completion of the coupling reaction is monitored at each stage, e.g., by the ninhydrin reaction as described by Kaiser et al., 1970 , Anal. Biochem . 34:595. In cases where incomplete coupling is found, the coupling reaction is repeated. The coupling reactions can be performed automatically with commercially available instruments.

After the entire assembly of the desired polypeptide, the polypeptide-resin is cleaved with a reagent such as liquid HF for 1-2 hours at 0° C., which cleaves the polypeptide from the resin and removes all side-chain protecting groups. A scavenger such as anisole is usually used with the liquid HF to prevent cations formed during the cleavage from alkylating the amino acid residues present in the polypeptide. The polypeptide-resin may be deprotected with TFA/dithioethane prior to cleavage if desired.

Side-chain to side-chain cyclization on the solid support requires the use of an orthogonal protection scheme which enables selective cleavage of the side-chain functions of acidic amino acids (e.g., Asp) and the basic amino acids (e.g., Lys). The 9-fluorenylmethyl (Fm) protecting group for the side-chain of Asp and the 9-fluorenylmethyloxycarbonyl (Fmoc) protecting group for the side-chain of Lys can be used for this purpose. In these cases, the side-chain protecting groups of the Boc-protected polypeptide-resin are selectively removed with piperidine in DMF. Cyclization is achieved on the solid support using various activating agents including DCC, DCC/HOBt or BOP. The HF reaction is carried out on the cyclized polypeptide-resin as described above.

Methods for polypeptide purification are well-known in the art, including, without limitation, preparative disc-gel electrophoresis, isoelectric focusing, HPLC, reversed-phase HPLC, gel filtration, ion exchange and partition chromatography, and countercurrent distribution. For some purposes, it is preferable to produce the polypeptide in a recombinant system in which the S. pneumoniae protein contains an additional sequence tag that facilitates purification, such as, but not limited to, a polyhistidine sequence. The polypeptide can then be purified from a crude lysate of the host cell by chromatography on an appropriate solid-phase matrix. Alternatively, antibodies produced against a S. pneumoniae protein or against peptides derived therefrom can be used as purification reagents. Other purification methods are possible.

The present invention also encompasses derivatives and homologues of S. pneumoniae -encoded polypeptides. For some purposes, nucleic acid sequences encoding the peptides may be altered by substitutions, additions, or deletions that provide for functionally equivalent molecules, i.e., function-conservative variants. For example, one or more amino acid residues within the sequence can be substituted by another amino acid of similar properties, such as, for example, positively charged amino acids (arginine, lysine, and histidine); negatively charged amino acids (aspartate and glutamate); polar neutral amino acids; and non-polar amino acids. The isolated polypeptides may be modified by, for example, phosphorylation, sulfation, acylation, or other protein modifications. They may also be modified with a label capable of providing a detectable signal, either directly or indirectly, including, but not limited to, radioisotopes and fluorescent compounds. agents.

To identify S. pneumoniae -derived polypeptides for use in the present invention, essentially the complete genomic sequence of a virulent, methicillin-resistant isolate of Streptococcus pneumoniae isolate was analyzed. While, in very rare instances, a nucleic acid sequencing error may be revealed, resolving a rare sequencing error is well within the art, and such an occurrence will not prevent one skilled in the art from practicing the invention.

Also encompassed are any S. pneumoniae polypeptide sequences that are contained within the open reading frames (ORFs), including complete protein-coding sequences, of which any of SEQ ID NO: 2604-SEQ ID NO: 5206 forms a part. Table 2, which is appended herewith and which forms part of the present specification, provides a putative identification of the particular function of a polypeptide which is encoded by each ORF. As a result, one skilled in the art can use the polypeptides of the present invention for commercial and industrial purposes consistent with the type of putative identification of the polypeptide.

The present invention provides a library of S. Pneumoniae -derived polypeptide sequences, and a corresponding library of nucleic acid sequences encoding the polypeptides, wherein the polypeptides themselves, or polypeptides contained within ORFs of which they form a part, comprise sequences that are contemplated for use as components of vaccines. Non-limiting examples of such sequences are listed by SEQ ID NO in Table 2, which is appended herewith and which forms part of the present specification.

The present invention also provides a library of S. pneumoniae -derived polypeptide sequences, and a corresponding library of nucleic acid sequences encoding the polypeptides, wherein the polypeptides themselves, or polypeptides contained within ORFs of which they form a part, comprise sequences lacking homology to any known prokaryotic or eukaryotic sequences. Such libraries provide probes, primers, and markers which can be used to diagnose S. pneumoniae infection, including use as markers in epidemiological studies. Non-limiting examples of such sequences are listed by SEQ ID NO in Table 2, which is appended

The present invention also provides a library of S. pneumoniae -derived polypeptide sequences, and a corresponding library of nucleic acid sequences encoding the polypeptides, wherein the polypeptides themselves, or polypeptides contained within ORFs of which they form a part, comprise targets for therapeutic drugs.

Specific Example: Determination of Candidate Protein Antiaens For Antibody and Vaccine Development

The selection of candidate protein antigens for vaccine development can be derived from the nucleic acids encoding S. pneumoniae polypeptides. First, the ORF's can be analyzed for homology to other known exported or membrane proteins and analyzed using the discriminant analysis described by Klein, et al. (Klein, P., Kanehsia, M., and DeLisi, C. (1985) Biochimica et Biophysica Acta 815, 468-476) for predicting exported and membrane proteins.

Homology searches can be performed using the BLAST algorithm contained in the Wisconsin Sequence Analysis Package (Genetics Computer Group, University Research Park, 575 Science Drive, Madison, Wis. 53711) to compare each predicted ORF amino acid sequence with all sequences found in the current GenBank, SWISS-PROT and PIR databases. BLAST searches for local alignments between the ORF and the databank sequences and reports a probability score which indicates the probability of finding this sequence by chance in the database. ORF's with significant homology (e.g. probabilities lower than 1×10 −6 that the homology is only due to random chance) to membrane or exported proteins represent protein antigens for vaccine development. Possible functions can be provided to S. pneumoniae genes based on sequence homology to genes cloned in other organisms.

Discriminant analysis (Klein, et al. supra) can be used to examine the ORF amino acid sequences. This algorithm uses the intrinsic information contained in the ORF amino acid sequence and compares it to information derived from the properties of known membrane and exported proteins. This comparison predicts which proteins will be exported, membrane associated or cytoplasmic. ORF amino acid sequences identified as exported or membrane associated by this algorithm are likely protein antigens for vaccine development.

Production of Fragments and Analogs of S. pneumoniae Nucleic Acids and Polypeptides

Based on the discovery of the S. pneumoniae gene products of the invention provided in the Sequence Listing, one skilled in the art can alter the disclosed structure (of S. pneumoniae genes), e.g., by producing fragments or analogs, and test the newly produced structures for activity. Examples of techniques known to those skilled in the relevant art which allow the production and testing of fragments and analogs are discussed below. These, or analogous methods can be used to make and screen libraries of polypeptides, e.g., libraries of random peptides or libraries of fragments or analogs of cellular proteins for the ability to bind S. pneumoniae polypeptides. Such screens are useful for the identification of inhibitors of S. pneumoniae.

Generation of Fragments

Fragments of a protein can be produced in several ways, e.g., recombinantly, by proteolytic digestion, or by chemical synthesis. Internal or terminal fragments of a polypeptide can be generated by removing one or more nucleotides from one end (for a terminal fragment) or both ends (for an internal fragment) of a nucleic acid which encodes the polypeptide. Expression of the mutagenized DNA produces polypeptide fragments. Digestion with “end-nibbling” endonucleases can thus generate DNA's which encode an array of fragments. DNA's which encode fragments of a protein can also be generated by random shearing, restriction digestion or a combination of the above-discussed methods.

Fragments can also be chemically synthesized using techniques known in the art such as conventional Merrifield solid phase f-Moc or t-Boc chemistry. For example, peptides of the present invention may be arbitrarily divided into fragments of desired length with no overlap of the fragments, or divided into overlapping fragments of a desired length.

Alteration of Nucleic Acids and Polypeptides: Random Methods

Amino acid sequence variants of a protein can be prepared by random mutagenesis of DNA which encodes a protein or a particular domain or region of a protein. Useful methods include PCR mutagenesis and saturation mutagenesis. A library of random amino acid sequence variants can also be generated by the synthesis of a set of degenerate oligonucleotide sequences. (Methods for screening proteins in a library of variants are elsewhere herein).

PCR Mutagenesis

In PCR mutagenesis, reduced Taq polymerase fidelity is used to introduce random mutations into a cloned fragment of DNA (Leung et al., 1989 , Technique 1:11-15). The DNA region to be mutagenized is amplified using the polymerase chain reaction (PCR) under conditions that reduce the fidelity of DNA synthesis by Taq DNA polymerase, e.g., by using a dGTP/dATP ratio of five and adding Mn 2+ to the PCR reaction. The pool of amplified DNA fragments are inserted into appropriate cloning vectors to provide random mutant libraries.

Saturation Mutagenesis Saturation mutagenesis allows for the rapid introduction of a large number of single base substitutions into cloned DNA fragments (Mayers et al., 1985 , Science 229:242). This technique includes generation of mutations, e.g., by chemical treatment or irradiation of single-stranded DNA in vitro, and synthesis of a complimentary DNA strand. The mutation frequency can be modulated by modulating the severity of the treatment, and essentially all possible base substitutions can be obtained. Because this procedure does not involve a genetic selection for mutant fragments both neutral substitutions, as well as those that alter function, are obtained. The distribution of point mutations is not biased toward conserved sequence elements.

Degenerated Oligonucleotides

A library of homologs can also be generated from a set of degenerate oligonucleotide sequences. Chemical synthesis of a degenerate sequences can be carried out in an automatic DNA synthesizer, and the synthetic genes then ligated into an appropriate expression vector. The synthesis of degenerate oligonucleotides is known in the art (see for example, Narang, S A (1983) Tetrahedron 39:3; Itakura et al. (1981) Recombinant DNA, Proc 3 rd Cleveland Sympos. Macromolecules , ed. A G Walton, Amsterdam: Elsevier pp273-289; Itakura et al. (1984) Annu. Rev. Biochem . 53:323; Itakura et al. (1984) Science 198:1056; Ike et al. (1983) Nucleic Acid Res . 11:477. Such techniques have been employed in the directed evolution of other proteins (see, for example, Scott et al. (1990) Science 249:386-390; Roberts et al. (1992) PNAS 89:2429-2433; Devlin et al. (1990) Science 249: 404-406; Cwirla et al. (I990) PNAS 87: 6378-6382; as well as U.S. Pat. Nos. 5,223,409, 5,198,346, and 5,096,815).

Alteration of Nucleic Acids and Polypeptides: Methods for Directed Mutagenesis

Non-random or directed, mutagenesis techniques can be used to provide specific sequences or mutations in specific regions. These techniques can be used to create variants which include, e.g., deletions, insertions, or substitutions, of residues of the known amino acid sequence of a protein. The sites for mutation can be modified individually or in series, e.g., by (1) substituting first with conserved amino acids and then with more radical choices depending upon results achieved, (2) deleting the target residue, or (3) inserting residues of the same or a different class adjacent to the located site, or combinations of options 1-3.

Alanine Scanning Mutagenesis

Alanine scanning mutagenesis is a useful method for identification of certain residues or regions of the desired protein that are preferred locations or domains for mutagenesis, Cunningham and Wells ( Science 244:1081-1085,1989). In alanine scanning, a residue or group of target residues are identified (e.g., charged residues such as Arg, Asp, His, Lys, and Glu) and replaced by a neutral or negatively charged amino acid (most preferably alanine or polyalanine). Replacement of an amino acid can affect the interaction of the amino acids with the surrounding aqueous environment in or outside the cell. Those domains demonstrating functional sensitivity to the substitutions are then refined by introducing further or other variants at or for the sites of substitution. Thus, while the site for introducing an amino acid sequence variation is predetermined, the nature of the mutation per se need not be predetermined. For example, to optimize the performance of a mutation at a given site, alanine scanning or random mutagenesis may be conducted at the target codon or region and the expressed desired protein subunit variants are screened for the optimal combination of desired activity.

Oligonucleotide-Mediated Mutagenesis

Oligonucleotide-Mediated mutagenesis is a useful method for preparing substitution, deletion, and insertion variants of DNA, see, e.g., Adelman et al., ( DNA 2:183, 1983). Briefly, the desired DNA is altered by hybridizing an oligonucleotide encoding a mutation to a DNA template, where the template is the single-stranded form of a plasmid or bacteriophage containing the unaltered or native DNA sequence of the desired protein. After hybridization, a DNA polymerase is used to synthesize an entire second complementary strand of the template that will thus incorporate the oligonucleotide primer, and will code for the selected alteration in the desired protein DNA. Generally, oligonucleotides of at least 25 nucleotides in length are used. An optimal oligonucleotide will have 12 to 15 nucleotides that are completely complementary to the template on either side of the nucleotide(s) coding for the mutation. This ensures that the oligonucleotide will hybridize properly to the single-stranded DNA template molecule. The oligonucleotides are readily synthesized using techniques known in the art such as that described by Crea et al. ( Proc. Natl. Acad. Sci . USA, 75:5765[1978]).

Cassette Mutagenesis

Another method for preparing variants, cassette mutagenesis, is based on the technique described by Wells et al. ( Gene , 34:315[1985]). The starting material is a plasmid (or other vector) which includes the protein subunit DNA to be mutated. The codon(s) in the protein subunit DNA to be mutated are identified. There must be a unique restriction endonuclease site on each side of the identified mutation site(s). If no such restriction sites exist, they may be generated using the above-described oligonucleotide-mediated mutagenesis method to introduce them at appropriate locations in the desired protein subunit DNA. After the restriction sites have been introduced into the plasmid, the plasmid is cut at these sites to linearize it. A double-stranded oligonucleotide encoding the sequence of the DNA between the restriction sites but containing the desired mutation(s) is synthesized using standard procedures. The two strands are synthesized separately and then hybridized together using standard techniques. This double-stranded oligonucleotide is referred to as the cassette. This cassette is designed to have 3′ and 5′ ends that are comparable with the ends of the linearized plasmid, such that it can be directly ligated to the plasmid. This plasmid now contains the mutated desired protein subunit DNA sequence.

Combinatorial Mutagenesis

Combinatorial mutagenesis can also be used to generate mutants (Ladner et al., WO 88/06630). In this method, the amino acid sequences for a group of homologs or other related proteins are aligned, preferably to promote the highest homology possible. All of the amino acids which appear at a given position of the aligned sequences can be selected to create a degenerate set of combinatorial sequences. The variegated library of variants is generated by combinatorial mutagenesis at the nucleic acid level, and is encoded by a variegated gene library. For example, a mixture of synthetic oligonucleotides can be enzymatically ligated into gene sequences such that the degenerate set of potential sequences are expressible as individual peptides, or alternatively, as a set of larger fusion proteins containing the set of degenerate sequences.

Other Modifications of S. pneumoniae Nucleic Acids and Polypeptides

It is possible to modify the structure of an S. pneumoniae polypeptide for such purposes as increasing solubility, enhancing stability (e.g., shelf life ex vivo and resistance to proteolytic degradation in vivo). A modified S. pneumoniae protein or peptide can be produced in which the amino acid sequence has been altered, such as by amino acid substitution, deletion, or addition as described herein.

An S. pneumoniae peptide can also be modified by substitution of cysteine residues preferably with alanine, serine, threonine, leucine or glutamic acid residues to minimize dimerization via disulfide linkages. In addition, amino acid side chains of fragments of the protein of the invention can be chemically modified. Another modification is cyclization of the peptide.

In order to enhance stability and/or reactivity, an S. pneumoniae polypeptide can be modified to incorporate one or more polymorphisms in the amino acid sequence of the protein resulting from any natural allelic variation. Additionally, D-amino acids, non-natural amino acids, or non-amino acid analogs can be substituted or added to produce a modified protein within the scope of this invention. Furthermore, an S. pneumoniae polypeptide can be modified using polyethylene glycol (PEG) according to the method of A. Sehon and co-workers (Wie et al., supra) to produce a protein conjugated with PEG. In addition, PEG can be added during chemical synthesis of the protein. Other modifications of S. pneumoniae proteins include reduction/alkylation (Tarr, Methods of Protein Microcharacterization , J. E. Silver ed., Humana Press, Clifton N.J. 155-194 (1986)); acylation (Tarr, supra); chemical coupling to an appropriate carrier (Mishell and Shiigi, eds, Selected Methods in Cellular Immunology , WH Freeman, San Francisco, Calif. (1980), U.S. Pat. No. 4,939,239; or mild formalin treatment (Marsh, (1971) Int. Arch. of Allergy and Appl. Immunol ., 41: 199-215).

To facilitate purification and potentially increase solubility of an S. pneumoniae protein or peptide, it is possible to add an amino acid fusion moiety to the peptide backbone. For example, hexa-histidine can be added to the protein for purification by immobilized metal ion affinity chromatography (Hochuli, E. et al., (1988) Bio/Technology , 6:1321-1325). In addition, to facilitate isolation of peptides free of irrelevant sequences, specific endoprotease cleavage sites can be introduced between the sequences of the fusion moiety and the peptide.

To potentially aid proper antigen processing of epitopes within an S. pneumoniae polypeptide, canonical protease sensitive sites can be engineered between regions, each comprising at least one epitope via recombinant or synthetic methods. For example, charged amino acid pairs, such as KK or RR, can be introduced between regions within a protein or fragment during recombinant construction thereof. The resulting peptide can be rendered sensitive to cleavage by cathepsin and/or other trypsin-like enzymes which would generate portions of the protein containing one or more epitopes. In addition, such charged amino acid residues can result in an increase in the solubility of the peptide.

Primary Methods for Screening Polypeptides and Analogs

Various techniques are known in the art for screening generated mutant gene products. Techniques for screening large gene libraries often include cloning the gene library into replicable expression vectors, transforming appropriate cells with the resulting library of vectors, and expressing the genes under conditions in which detection of a desired activity, e.g., in this case, binding to S. pneumoniae polypeptide or an interacting protein, facilitates relatively easy isolation of the vector encoding the gene whose product was detected. Each of the techniques described below is amenable to high through-put analysis for screening large numbers of sequences created, e.g., by random mutagenesis techniques.

Two Hybrid Systems

Two hybrid assays such as the system described above (as with the other screening methods described herein), can be used to identify polypeptides, e.g., fragments or analogs of a naturally-occurring S. pneumoniae polypeptide, e.g., of cellular proteins, or of randomly generated polypeptides which bind to an S. pneumoniae protein. (The S. pneumoniae domain is used as the bait protein and the library of variants are expressed as prey fusion proteins.) In an analogous fashion, a two hybrid assay (as with the other screening methods described herein), can be used to find polypeptides which bind a S. pneumoniae polypeptide.

Display Libraries

In one approach to screening assays, the candidate peptides are displayed on the surface of a cell or viral particle, and the ability of particular cells or viral particles to bind an appropriate receptor protein via the displayed product is detected in a “panning assay”. For example, the gene library can be cloned into the gene for a surface membrane protein of a bacterialb cell, and the resulting fusion protein detected by panning (Ladner et al., WO 88/06630; Fuchs et al. (1991) Bio/Technology 9:1370-1371; and Goward et al. (1992) TIBS 18:136-140). In a similar fashion, a detectably labeled ligand can be used to score for potentially functional peptide homologs. Fluorescently labeled ligands, e.g., receptors, can be used to detect homologs which retain ligand-binding activity. The use of fluorescently labeled ligands, allows cells to be visually inspected and separated under a fluorescence microscope, or, where the morphology of the cell permits, to be separated by a fluorescence-activated cell sorter.

A gene library can be expressed as a fusion protein on the surface of a viral particle. For instance, in the filamentous phage system, foreign peptide sequences can be expressed on the surface of infectious phage, thereby conferring two significant benefits. First, since these phage can be applied to affinity matrices at concentrations well over 10 13 phage per milliliter, a large number of phage can be screened at one time. Second, since each infectious phage displays a gene product on its surface, if a particular phage is recovered from an affinity matrix in low yield, the phage can be amplified by another round of infection. The group of almost identical E. coli filamentous phages M13, fd., and f1 are most often used in phage display libraries. Either of the phage gIII or gVIII coat proteins can be used to generate fusion proteins without disrupting the ultimate packaging of the viral particle. Foreign epitopes can be expressed at the NH 2 -terminal end of pIII and phage bearing such epitopes recovered from a large excess of phage lacking this epitope (Ladner et al. PCT publication WO 90/02909; Garrard et al., PCT publication WO 92/09690; Marks et al. (1992) J. Biol. Chem . 267:16007-16010; Griffiths et al. (1993) EMBO J 12:725-734; Clackson et al. (1991) Nature 352:624-628; and Barbas et al. (1992) PNAS 89:4457-4461).

A common approach uses the maltose receptor of E. coli (the outer membrane protein, LamB) as a peptide fusion partner (Charbit et al. (1986) EMBO 5, 3029-3037). Oligonucleotides have been inserted into plasmids encoding the LamB gene to produce peptides fused into one of the extracellular loops of the protein. These peptides are available for binding to ligands, e.g., to antibodies, and can elicit an immune response when the cells are administered to animals. Other cell surface proteins, e.g., OmpA (Schorr et al. (1991) Vaccines 91, pp. 387-392), PhoE (Agterberg, et al. (1990) Gene 88, 37-45), and PAL (Fuchs et al. (1991) Bio/Tech 9, 1369-1372), as well as large bacterial surface structures have served as vehicles for peptide display. Peptides can be fused to pilin, a protein which polymerizes to form the pilus-a conduit for interbacterial exchange of genetic information (Thiry et al. (1989) Appl. Environ. Microbiol . 55, 984-993). Because of its role in interacting with other cells, the pilus provides a useful support for the presentation of peptides to the extracellular environment. Another large surface structure used for peptide display is the bacterial motive organ, the flagellum. Fusion of peptides to the subunit protein flagellin offers a dense array of many peptide copies on the host cells (Kuwajima et al. (1988) Bio/Tech . 6, 1080-1083). Surface proteins of-other bacterial species have also served as peptide fusion partners. Examples include the Staphylococcus protein A and the outer membrane IgA protease of Neisseria (Hansson et al. (1992) J. Bacteriol . 174, 4239-4245 and Klauser et al. (1990) EMBO J . 9, 1991-1999).

In the filamentous phage systems and the LamB system described above, the physical link between the peptide and its encoding DNA occurs by the containment of the DNA within a particle (cell or phage) that carries the peptide on its surface. Capturing the peptide captures the particle and the DNA within. An alternative scheme uses the DNA-binding protein LacI to form a link between peptide and DNA (Cull et al. (1992) PNAS USA 89:1865-1869). This system uses a plasmid containing the LacI gene with an oligonucleotide cloning site at its 3′-end. Under the controlled induction by arabinose, a LacI-peptide fusion protein is produced. This fusion retains the natural ability of LacI to bind to a short DNA sequence known as LacO operator (LacO). By installing two copies of LacO on the expression plasmid, the LacI-peptide fusion binds tightly to the plasmid that encoded it. Because the plasmids in each cell contain only a single oligonucleotide sequence and each cell expresses only a single peptide sequence, the peptides become specifically and stablely associated with the DNA sequence that directed its synthesis. The cells of the library are gently lysed and the peptide-DNA complexes are exposed to a matrix of immobilized receptor to recover the complexes containing active peptides. The associated plasmid DNA is then reintroduced into cells for amplification and DNA sequencing to determine the identity of the peptide ligands. As a demonstration of the practical utility of the method, a large random library of dodecapeptides was made and selected on a monoclonal antibody raised against the opioid peptide dynorphin B. A cohort of peptides was recovered, all related by a consensus sequence corresponding to a six-residue portion of dynorphin B. (Cull et al. (1992) Proc. Natl. Acad. Sci. U.S.A . 89-1869)

This scheme, sometimes referred to as peptides-on-plasmids, differs in two important ways from the phage display methods. First, the peptides are attached to the C-terminus of the fusion protein, resulting in the display of the library members as peptides having free carboxy termini. Both of the filamentous phage coat proteins, pill and pVIII, are anchored to the phage through their C-termini, and the guest peptides are placed into the outward-extending N-terminal domains. In some designs, the phage-displayed peptides are presented right at the amino terminus of the fusion protein. (Cwirla, et al. (1990) Proc. Natl. Acad. Sci. U.S.A . 87, 6378-6382) A second difference is the set of biological biases affecting the population of peptides actually present in the libraries. The LacI fusion molecules are confined to the cytoplasm of the host cells. The phage coat fusions are exposed briefly to the cytoplasm during translation but are rapidly secreted through the inner membrane into the periplasmic compartment, remaining anchored in the membrane by their C-terminal hydrophobic domains, with the N-termini, containing the peptides, protruding into the periplasm while awaiting assembly into phage particles. The peptides in the LacI and phage libraries may differ significantly as a result of their exposure to different proteolytic activities. The phage coat proteins require transport across the inner membrane and signal peptidase processing as a prelude to incorporation into phage. Certain peptides exert a deleterious effect on these processes and are underrepresented in the libraries (Gallop et al. (1994) J. Med. Chem . 37(9):1233-1251). These particular biases are not a factor in the LacI display system.

The number of small peptides available in recombinant random libraries is enormous. Libraries of 10 7 -10 9 independent clones are routinely prepared. Libraries as large as 10 11 recombinants have been created, but this size approaches the practical limit for clone libraries. This limitation in library size occurs at the step of transforming the DNA containing randomized segments into the host bacterial cells. To circumvent this limitation, an in vitro system based on the display of nascent peptides in polysome complexes has recently been developed. This display library method has the potential of producing libraries 3-6 orders of magnitude larger than the currently available phage/phagemid or plasmid libraries. Furthermore, the construction of the libraries, expression of the peptides, and screening, is done in an entirely cell-free format.

In one application of this method (Gallop et al. (1994) J. Med. Chem . 37(9):1233-1251), a molecular DNA library encoding 10 12 decapeptides was constructed and the library expressed in an E. coli S30 in vitro coupled transcription/translation system. Conditions were chosen to stall the ribosomes on the mRNA, causing the accumulation of a substantial proportion of the RNA in polysomes and yielding complexes containing nascent peptides still linked to their encoding RNA. The polysomes are sufficiently robust to be affinity purified on immobilized receptors in much the same way as the more conventional recombinant peptide display libraries are screened. RNA from the bound complexes is recovered, converted to cDNA, and amplified by PCR to produce a template for the next round of synthesis and screening. The polysome display method can be coupled to the phage display system. Following several rounds of screening, cDNA from the enriched pool of polysomes was cloned into a phagemid vector. This vector serves as both a peptide expression vector, displaying peptides fused to the coat proteins, and as a DNA sequencing vector for peptide identification. By expressing the polysome-derived peptides on phage, one can either continue the affinity selection procedure in this format or assay the peptides on individual clones for binding activity in a phage ELISA, or for binding specificity in a completion phage ELISA (Barret, et al. (1992) Anal. Biochem 204,357-364). To identify the sequences of the active peptides one sequences the DNA produced by the phagemid host.

Secondary Screening of Polypeptides and Analogs

The high through-put assays described above can be followed by secondary screens in order to identify further biological activities which will, e.g., allow one skilled in the art to differentiate agonists from antagonists. The type of a secondary screen used will depend on the desired activity that needs to be tested. For example, an assay can be developed in which the ability to inhibit an interaction between a protein of interest and its respective ligand can be used to identify antagonists from a group of peptide fragments isolated though one of the primary screens described above.

Therefore, methods for generating fragments and analogs and testing them for activity are known in the art. Once the core sequence of interest is identified, it is routine for one skilled in the art to obtain analogs and fragments.

Peptide Mimetics of S. pneumoniae Polypeptides

The invention also provides for reduction of the protein binding domains of the subject S. pneumoniae polypeptides to generate mimetics, e.g. peptide or non-peptide agents. The peptide mimetics are able to disrupt binding of a polypeptide to its counter ligand, e.g., in the case of an S. pneumoniae polypeptide binding to a naturally occurring ligand. The critical residues of a subject S. pneumoniae polypeptide which are involved in molecular recognition of a polypeptide can be determined and used to generate S. pneumoniae -derived peptidomimetics which competitively or noncompetitively inhibit binding of the S. pneumoniae polypeptide with an interacting polypeptide (see, for example, European patent applications EP-412,762A and EP-B31,080A).

For example, scanning mutagenesis can be used to map the amino acid residues of a particular S. pneumoniae polypeptide involved in binding an interacting polypeptide, peptidomimetic compounds (e.g. diazepine or isoquinoline derivatives) can be generated which mimic those residues in binding to an interacting polypeptide, and which therefore can inhibit binding of an S. pneumoniae polypeptide to an interacting polypeptide and thereby interfere with the function of S. pneumoniae polypeptide. For instance, non-hydrolyzable peptide analogs of such residues can be generated using benzodiazepine (e.g., see Freidinger et al. in Peptides: Chemistry and Biology , G. R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), azepine (e.g., see Huffman et al. in Peptides: Chemistry and Biology , G. R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), substituted gama lactam rings (Garvey et al. in Peptides: Chemistry and Biology , G. R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), keto-methylene pseudopeptides (Ewenson et al. (1986) J Med Chem 29:295; and Ewenson et al. in Peptides: Structure and Function (Proceedings of the 9th American Peptide Symposium) Pierce Chemical Co. Rockland, Ill., 1985), b-turn dipeptide cores (Nagai et al. (1985) Tetrahedron Lett 26:647; and Sato et al. (1986) J Chem Soc Perkin Trans 1:1231), and b-aminoalcohols (Gordon et al. (1985) Biochem Biophys Res Commun 126:419; and et al. (1986) Biochem Biophys Res Commun 134:71).

Vaccine Formulations for S. pneumoniae Nucleic Acids and Polypeptides

This invention also features vaccine compositions for protection against infection by S. pneumoniae or for treatment of S. pneumoniae infection, a gram-negative spiral microaerophilic bacterium. In one embodiment, the vaccine compositions contain one or more immunogenic components such as a surface protein from S. pneumoniae , or portion thereof, and a pharmaceutically acceptable carrier. Nucleic acids within the scope of the invention are exemplified by the nucleic acids of the invention contained in the Sequence Listing which encode S. pneumoniae surface proteins. Any nucleic acid encoding an immunogenic S. pneumoniae protein, or portion thereof, which is capable of expression in a cell, can be used in the present invention. These vaccines have therapeutic and prophylactic utilities.

One aspect of the invention provides a vaccine composition for protection against infection by S. pneumoniae which contains at least one immunogenic fragment of an S. pneumoniae protein and a pharmaceutically acceptable carrier. Preferred fragments include peptides of at least about 10 amino acid residues in length, preferably about 10-20 amino acid residues in length, and more preferably about 12-16 amino acid residues in length.

Immunogenic components of the invention can be obtained, for example, by screening polypeptides recombinantly produced from the corresponding fragment of the nucleic acid encoding the full-length S. pneumoniae protein. In addition, fragments can be chemically synthesized using techniques known in the art such as conventional Merrifield solid phase f-Moc or t-Boc chemistry.

In one embodiment, immunogenic components are identified by the ability of the peptide to stimulate T cells. Peptides which stimulate T cells, as determined by, for example, T cell proliferation or cytokine secretion are defined herein as comprising at least one T cell epitope. T cell epitopes are believed to be involved in initiation and perpetuation of the immune response to the protein allergen which is responsible for the clinical symptoms of allergy. These T cell epitopes are thought to trigger early events at the level of the T helper cell by binding to an appropriate HLA molecule on the surface of an antigen presenting cell, thereby stimulating the T cell subpopulation with the relevant T cell receptor for the epitope. These events lead to T cell proliferation, lymphokine secretion, local inflammatory reactions, recruitment of additional immune cells to the site of antigen/T cell interaction, and activation of the B cell cascade, leading to the production of antibodies. A T cell epitope is the basic element, or smallest unit of recognition by a T cell receptor, where the epitope comprises amino acids essential to receptor recognition (e.g., approximately 6 or 7 amino acid residues). Amino acid sequences which mimic those of the T cell epitopes are within the scope of this invention.

Screening immunogenic components can be accomplished using one or more of several different assays. For example, in vitro, peptide T cell stimulatory activity is assayed by contacting a peptide known or suspected of being immunogenic with an antigen presenting cell which presents appropriate MHC molecules in a T cell culture. Presentation of an immunogenic S. pneumoniae peptide in association with appropriate MHC molecules to T cells in conjunction with the necessary co-stimulation has the effect of transmitting a signal to the T cell that induces the production of increased levels of cytokines, particularly of interleukin-2 and interleukin-4. The culture supernatant can be obtained and assayed for interleukin-2 or other known cytokines. For example, any one of several conventional assays for interleukin-2 can be employed, such as the assay described in Proc. Natl. Acad. Sci USA , 86: 1333 (1989) the pertinent portions of which are incorporated herein by reference. A kit for an assay for the production of interferon is also available from Genzyme Corporation (Cambridge, Mass.).

Alternatively, a common assay for T cell proliferation entails measuring tritiated thymidine incorporation. The proliferation of T cells can be measured in vitro by determining the amount of 3 H-labeled thymidine incorporated into the replicating DNA of cultured cells. Therefore, the rate of DNA synthesis and, in turn, the rate of cell division can be quantified.

Vaccine compositions of the invention containing immunogenic components (e.g., S. pneumoniae polypeptide or fragment thereof or nucleic acid encoding an S. pneumoniae polypeptide or fragment thereof) preferably include a pharmaceutically acceptable carrier. The term “pharmaceutically acceptable carrier” refers to a carrier that does not cause an allergic reaction or other untoward effect in patients to whom it is administered. Suitable pharmaceutically acceptable carriers include, for example, one or more of water, saline, phosphate buffered saline, dextrose, glycerol, ethanol and the like, as well as combinations thereof. Pharmaceutically acceptable carriers may further comprise minor amounts of auxiliary substances such as wetting or emulsifying agents, preservatives or buffers, which enhance the shelf life or effectiveness of the antibody. For vaccines of the invention containing S. pneumoniae polypeptides, the polypeptide is co-administered with a suitable adjuvant.

It will be apparent to those of skill in the art that the therapeutically effective amount of DNA or protein of this invention will depend, inter alia, upon the administration schedule, the unit dose of antibody administered, whether the protein or DNA is administered in combination with other therapeutic agents, the immune status and health of the patient, and the therapeutic activity of the particular protein or DNA.

Vaccine compositions are conventionally administered parenterally, e.g., by injection, either subcutaneously or intramuscularly. Methods for intramuscular immunization are described by Wolff et al. (1990) Science 247: 1465-1468 and by Sedegah et al. (1994) Immunology 91: 9866-9870. Other modes of administration include oral and pulmonary formulations, suppositories, and transdermal applications. Oral immunization is preferred over parenteral methods for inducing protection against infection by S. pneumoniae . Cain et. al. (1993) Vaccine 11:637-642. Oral formulations include such normally employed excipients as, for example, pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, sodium saccharine, cellulose, magnesium carbonate, and the like.

The vaccine compositions of the invention can include an adjuvant, including, but not limited to aluminum hydroxide; N-acetyl-muramyl-L-threonyl-D-isoglutamine (thr-MDP); N-acetyl-nor-muramyl-L-alanyl-D-isoglutamine (CGP 11637, referred to as nor-MDP); N-acetylmuramyl-L-alanyl-D-isoglutaminyl-L-alanine-2-(1′-2′-dipalmitoyl-sn-glycero-3-hydroxyphos-phoryloxy)-ethylamine (CGP 19835A, referred to a MTP-PE); RIBI, which contains three components from bacteria; monophosphoryl lipid A; trehalose dimycoloate; cell wall skeleton (MPL+TDM+CWS) in a 2% squalene/Tween 80 emulsion; and cholera toxin. Others which may be used are non-toxic derivatives of cholera toxin, including its B subunit, and/or conjugates or genetically engineered fusions of the S. pneumoniae polypeptide with cholera toxin or its B subunit, procholeragenoid, fungal polysaccharides, including schizophyllan, muramyl dipeptide, muramyl dipeptide derivatives, phorbol esters, labile toxin of E. coli , non- S. pneumoniae bacterial lysates, block polymers or saponins.

Other suitable delivery methods include biodegradable microcapsules or immuno-stimulating complexes (ISCOMs), cochleates, or liposomes, genetically engineered attenuated live vectors such as viruses or bacteria, and recombinant (chimeric) virus-like particles, e.g., bluetongue. The amount of adjuvant employed will depend on the type of adjuvant used. For example, when the mucosal adjuvant is cholera toxin, it is suitably used in an amount of 5 mg to 50 mg, for example 10 mg to 35 mg. When used in the form of microcapsules, the amount used will depend on the amount employed in the matrix of the microcapsule to achieve the desired dosage. The determination of this amount is within the skill of a person of ordinary skill in the art.

Carrier systems in humans may include enteric release capsules protecting the antigen from the acidic environment of the stomach, and including S. pneumoniae polypeptide in an insoluble form as fusion proteins. Suitable carriers for the vaccines of the invention are enteric coated capsules and polylactide-glycolide microspheres. Suitable diluents are 0.2 N NaHCO3 and/or saline.

Vaccines of the invention can be administered as a primary prophylactic agent in adults or in children, as a secondary prevention, after successful eradication of S. pneumoniae in an infected host, or as a therapeutic agent in the aim to induce an immune response in a susceptible host to prevent infection by S. pneumoniae . The vaccines of the invention are administered in amounts readily determined by persons of ordinary skill in the art. Thus, for adults a suitable dosage will be in the range of 10 mg to 10 g, preferably 10 mg to 100 mg. A suitable dosage for adults will also be in the range of 5 mg to 500 mg. Similar dosage ranges will be applicable for children. Those skilled in the art will recognize that the optimal dose may be more or less depending upon the patient's body weight, disease, the route of administration, and other factors. Those skilled in the art will also recognize that appropriate dosage levels can be obtained based on results with known oral vaccines such as, for example, a vaccine based on an E. coli lysate (6 mg dose daily up to total of 540 mg) and with an enterotoxigenic E. coli purified antigen (4 doses of 1 mg) (Schulman et al., J. Urol. 150:917-921 (1993); Boedecker et al., American Gastroenterological Assoc . 999: A-222 (1993)). The number of doses will depend upon the disease, the formulation, and efficacy data from clinical trials. Without intending any limitation as to the course of treatment, the treatment can be administered over 3 to 8 doses for a primary immunization schedule over 1 month (Boedeker, American Gastroenterological Assoc . 888:A-222 (1993)).

In a preferred embodiment, a vaccine composition of the invention can be based on a killed whole E. coli preparation with an immunogenic fragment of an S. pneumoniae protein of the invention expressed on its surface or it can be based on an E. coli lysate, wherein the killed E. coli acts as a carrier or an adjuvant.

It will be apparent to those skilled in the art that some of the vaccine compositions of the invention are useful only for preventing S. pneumoniae infection, some are useful only for treating S. pneumoniae infection, and some are useful for both preventing and treating S. pneumoniae infection. In a preferred embodiment, the vaccine composition of the invention provides protection against S. pneumoniae infection by stimulating humoral and/or cell-mediated immunity against S. pneumoniae . It should be understood that amelioration of any of the symptoms of S. pneumoniae infection is a desirable clinical goal, including a lessening of the dosage of medication used to treat S. pneumoniae-caused disease, or an increase in the production of antibodies in the serum or mucous of patients.

Antibodies Reactive with S. pneumoniae Polypeptides

The invention also includes antibodies specifically reactive with the subject S. pneumoniae polypeptide. Anti-protein/anti-peptide antisera or monoclonal antibodies can be made by standard protocols (See, for example, Antibodies: A Laboratory Manual ed. by Harlow and Lane (Cold Spring Harbor Press: 1988)). A mammal such as a mouse, a hamster or rabbit can be immunized with an immunogenic form of the peptide. Techniques for conferring immunogenicity on a protein or peptide include conjugation to carriers or other techniques well known in the art. An immunogenic portion of the subject S. pneumoniae polypeptide can be administered in the presence of adjuvant. The progress of immunization can be monitored by detection of antibody titers in plasma or serum. Standard ELISA or other immunoassays can be used with the immunogen as antigen to assess the levels of antibodies.

In a preferred embodiment, the subject antibodies are immunospecific for antigenic determinants of the S. pneumoniae polypeptides of the invention, e.g. antigenic determinants of a polypeptide of the invention contained in the Sequence Listing, or a closely related human or non-human mammalian homolog (e.g., 90% homologous, more preferably at least 95% homologous). In yet a further preferred embodiment of the invention, the anti- S. pneumoniae antibodies do not substantially cross react (i.e., react specifically) with a protein which is for example, less than 80% percent homologous to a sequence of the invention contained in the Sequence Listing. By “not substantially cross react”, it is meant that the antibody has a binding affinity for a non-homologous protein which is less than 10 percent, more preferably less than 5 percent, and even more preferably less than 1 percent, of the binding affinity for a protein of the invention contained in the Sequence Listing. In a most preferred embodiment, there is no cross-reactivity between bacterial and mammalian antigens.

The term antibody as used herein is intended to include fragments thereof which are also specifically reactive with S. pneumoniae polypeptides. Antibodies can be fragmented using conventional techniques and the fragments screened for utility in the same manner as described above for whole antibodies. For example, F(ab′) 2 fragments can be generated by treating antibody with pepsin. The resulting F(ab′)2 fragment can be treated to reduce disulfide bridges to produce Fab fragments. The antibody of the invention is further intended to include bispecific and chimeric molecules having an anti- S. pneumoniae portion.

Both monoclonal and polyclonal antibodies (Ab) directed against S. pneumoniae polypeptides or S. pneumoniae polypeptide variants, and antibody fragments such as Fab′ and F(ab′) 2 , can be used to block the action of S. pneumoniae polypeptide and allow the study of the role of a particular S. pneumoniae polypeptide of the invention in aberrant or unwanted intracellular signaling, as well as the normal cellular function of the S. pneumoniae and by microinjection of anti- S. pneumoniae polypeptide antibodies of the present invention.

Antibodies which specifically bind S. pneumoniae epitopes can also be used in immunohistochemical staining of tissue samples in order to evaluate the abundance and pattern of expression of S. pneumoniae antigens. Anti S. pneumoniae polypeptide antibodies can be used diagnostically in immuno-precipitation and immuno-blotting to detect and evaluate S. pneumoniae levels in tissue or bodily fluid as part of a clinical testing procedure. Likewise, the ability to monitor S. pneumoniae polypeptide levels in an individual can allow determination of the efficacy of a given treatment regimen for an individual afflicted with such a disorder. The level of an S. pneumoniae polypeptide can be measured in cells found in bodily fluid, such as in urine samples or can be measured in tissue, such as produced by gastric biopsy. Diagnostic assays using anti- S. pneumoniae antibodies can include, for example, immunoassays designed to aid in early diagnosis of S. pneumonide infections. The present invention can also be used as a method of detecting antibodies contained in samples from individuals infected by this bacterium using specific S. pneumoniae antigens.

Another application of anti- S. pneumoniae polypeptide antibodies of the invention is in the immunological screening of cDNA libraries constructed in expression vectors such as lgt11, lgt18-23, lZAP, and lORF8. Messenger libraries of this type, having coding sequences inserted in the correct reading frame and orientation, can produce fusion proteins. For instance, lgt11 will produce fusion proteins whose amino termini consist of β-galactosidase amino acid sequences and whose carboxy termini consist of a foreign polypeptide. Antigenic epitopes of a subject S. pneumoniae polypeptide can then be detected with antibodies, as, for example, reacting nitrocellulose filters lifted from infected plates with anti- S. pneumoniae polypeptide antibodies. Phage, scored by this assay, can then be isolated from the infected plate. Thus, the presence of S. pneumoniae gene homologs can be detected and cloned from other species, and alternate isoforms (including splicing variants) can be detected and cloned.

Kits Containing Nucleic Acids, Polypeptides or Antibodies of the Invention

The nucleic acid, polypeptides and antibodies of the invention can be combined with other reagents and articles to form kits. Kits for diagnostic purposes typically comprise the nucleic acid, polypeptides or antibodies in vials or other suitable vessels. Kits typically comprise other reagents for performing hybridization reactions, polymerase chain reactions (PCR), or for reconstitution of lyophilized components, such as aqueous media, salts, buffers, and the like. Kits may also comprise reagents for sample processing such as detergents, chaotropic salts and the like. Kits may also comprise immobilization means such as particles, supports, wells, dipsticks and the like. Kits may also comprise labeling means such as dyes, developing reagents, radioisotopes, fluorescent agents, luminescent or chemiluminescent agents, enzymes, intercalating agents and the like. With the nucleic acid and amino acid sequence information provided herein, individuals skilled in art can readily assemble kits to serve their particular purpose. Kits further can include instructions for use.

Drug Screening Assays Using S. pneumoniae Polypeptides

By making available purified and recombinant S. pneumoniae polypeptides, the present invention provides assays which can be used to screen for drugs which are either agonists or antagonists of the normal cellular function, in this case, of the subject S. pneumoniae polypeptides, or of their role in intracellular signaling. Such inhibitors or potentiators may be useful as new therapeutic agents to combat S. pneumoniae infections in humans. A variety of assay formats will suffice and, in light of the present inventions, will be comprehended by the skilled artisan.

In many drug screening programs which test libraries of compounds and natural extracts, high throughput assays are desirable in order to maximize the number of compounds surveyed in a given period of time. Assays which are performed in cell-free systems, such as may be derived with purified or semi-purified proteins, are often preferred as “primary” screens in that they can be generated to permit rapid development and relatively easy detection of an alteration in a molecular target which is mediated by a test compound. Moreover, the effects of cellular toxicity and/or bioavailability of the test compound can be generally ignored in the in vitro system, the assay instead being focused primarily on the effect of the drug on the molecular target as may be manifest in an alteration of binding affinity with other proteins or change in enzymatic properties of the molecular target. Accordingly, in an exemplary screening assay of the present invention, the compound of interest is contacted with an isolated and purified S. pneumoniae polypeptide.

Screening assays can be constructed in vitro with a purified S. pneumoniae polypeptide or fragment thereof, such as an S. pneumoniae polypeptide having enzymatic activity, such that the activity of the polypeptide produces a detectable reaction product. The efficacy of the compound can be assessed by generating dose response curves from data obtained using various concentrations of the test compound. Moreover, a control assay can also be performed to provide a baseline for comparison. Suitable products include those with distinctive absorption, fluorescence, or chemi-luminescence properties, for example, because detection may be easily automated. A variety of synthetic or naturally occurring compounds can be tested in the assay to identify those which inhibit or potentiate the activity of the S. pneumoniae polypeptide. Some of these active compounds may directly, or with chemical alterations to promote membrane permeability or solubility, also inhibit or potentiate the same activity (e.g., enzymatic activity) in whole, live S. pneumoniae cells.

Overexpression Assays

Overexpression assays are based on the premise that overproduction of a protein would lead to a higher level of resistance to compounds that selectively interfere with the function of that protein. Overexpression assays may be used to identify compounds that interfere with the function of virtually any type of protein, including without limitation enzymes, receptors, DNA- or RNA-binding proteins, or any proteins that are directly or indirectly involved in regulating cell growth.

Typically, two bacterial strains are constructed. One contains a single copy of the gene of interest, and a second contains several copies of the same gene. Identification of useful inhibitory compounds of this type of assay is based on a comparison of the activity of a test compound in inhibiting growth and/or viability of the two strains. The method involves constructing a nucleic acid vector that directs high level expression of a particular target nucleic acid. The vectors are then transformed into host cells in single or multiple copies to produce strains that express low to moderate and high levels of protein encoding by the target sequence (strain A and B, respectively). Nucleic acid comprising sequences encoding the target gene can, of course, be directly integrated into the host cell.

Large numbers of compounds (or crude substances which may contain active compounds) are screened for their effect on the growth of the two strains. Agents which interfere with an unrelated target equally inhibit the growth of both strains. Agents which interfere with the function of the target at high concentration should inhibit the growth of both strains. It should be possible, however, to titrate out the inhibitory effect of the compound in the overexpressing strain. That is, if the compound is affecting the particular target that is being tested, it should be possible to inhibit the growth of strain A at a concentration of the compound that allows strain B to grow.

Alternatively, a bacterial strain is constructed that contains the gene of interest under the control of an inducible promoter. Identification of useful inhibitory agents using this type of assay is based on a comparison of the activity of a test compound in inhibiting growth and/or viability of this strain under both inducing and non-inducing conditions. The method involves constructing a nucleic acid vector that directs high-level expression of a particular target nucleic acid. The vector is then transformed into host cells that are grown under both non-inducing and inducing conditions (conditions A and B, respectively).

Large numbers of compounds (or crude substances which may contain active compounds) are screened for their effect on growth under these two conditions. Agents that interfere with the function of the target should inhibit growth under both conditions. It should be possible, however, to titrate out the inhibitory effect of the compound in the overexpressing strain. That is, if the compound is affecting the particular target that is being tested, it should be possible to inhibit growth under condition A at a concentration that allows the strain to grow under condition B.

Lipand-binding Assays

Many of the targets according to the invention have functions that have not yet been identified. Ligand-binding assays are useful to identify inhibitor compounds that interfere with the function of a particular target, even when that function is unknown. These assays are designed to detect binding of test compounds to particular targets. The detection may involve direct measurement of binding. Alternatively, indirect indications of binding may involve stabilization of protein structure or disruption of a biological function. Non-limiting examples of useful ligand-binding assays are detailed below.

A useful method for the detection and isolation of binding proteins is the Biomolecular Interaction Assay (BIAcore) system developed by Pharmacia Biosensor and described in the manufacturer's protocol (LKB Pharmacia, Sweden). The BIAcore system uses an affinity purified anti-GST antibody to immobilize GST-fusion proteins onto a sensor chip. The sensor utilizes surface plasmon resonance which is an optical phenomenon that detects changes in refractive indices. In accordance with the practice of the invention, a protein of interest is coated onto a chip and test compounds are passed over the chip. Binding is detected by a change in the refractive index (surface plasmon resonance).

A different type of ligand-binding assay involves scintillation proximity assays (SPA, described in U.S. Pat. No. 4,568,649).

Another type of ligand binding assay, also undergoing development, is based on the fact that proteins containing mitochondrial targeting signals are imported into isolated mitochondria in vitro (Hurt et al., 1985 , Embo J . 4:2061-2068; Eilers and Schatz, Nature , 1986, 322:228-231). In a mitochondrial import assay, expression vectors are constructed in which nucleic acids encoding particular target proteins are inserted downstream of sequences encoding mitochondrial import signals. The chimeric proteins are synthesized and tested for their ability to be imported into isolated mitochondria in the absence and presence of test compounds. A test compound that binds to the target protein should inhibit its uptake into isolated mitochondria in vitro.

Another ligand-binding assay is the yeast two-hybrid system (Fields and Song, 1989 , Nature 340:245-246). The yeast two-hybrid system takes advantage of the properties of the GAL4 protein of the yeast Saccharomyces cerevisiae . The GAL4 protein is a transcriptional activator required for the expression of genes encoding enzymes of galactose utilization. This protein consists of two separable and functionally essential domains: an N-terminal domain which binds to specific DNA sequences (UAS G ); and a C-terminal domain containing acidic regions, which is necessary to activate transcription. The native GAL4 protein, containing both domains, is a potent activator of transcription when yeast are grown on galactose media. The N-terminal domain binds to DNA in a sequence-specific manner but is unable to activate transcription. The C-terminal domain contains the activating regions but cannot activate transcription because it fails to be localized to UAS G . In the two-hybrid system, a system of two hybrid proteins containing parts of GAL4: (1) a GAL4 DNA-binding domain fused to a protein ‘X’ and (2) a GAL4 activation region fused to a protein ‘Y’. If X and Y can form a protein-protein complex and reconstitute proximity of the GAL4 domains, transcription of a gene regulated by UASG occurs. Creation of two hybrid proteins, each containing one of the interacting proteins X and Y, allows the activation region of UAS G to be brought to its normal site of action.

The binding assay described in Fodor et al., 1991 , Science 251:767-773, which involves testing the binding affinity of test compounds for a plurality of defined polymers synthesized on a solid substrate, may also be useful.

Compounds which bind to the polypeptides of the invention are potentially useful as antibacterial agents for use in therapeutic compositions.

Pharmaceutical formulations suitable for antibacterial therapy comprise the antibacterial agent in conjunction with one or more biologically acceptable carriers. Suitable biologically acceptable carriers include, but are not limited to, phosphate-buffered saline, saline, deionized water, or the like. Preferred biologically acceptable carriers are physiologically or pharmaceutically acceptable carriers.

The antibacterial compositions include an antibacterial effective amount of active agent. Antibacterial effective amounts are those quantities of the antibacterial agents of the present invention that afford prophylactic protection against bacterial infections or which result in amelioration or cure of an existing bacterial infection. This antibacterial effective amount will depend upon the agent, the location and nature of the infection, and the particular host. The amount can be determined by experimentation known in the art, such as by establishing a matrix of dosages and frequencies and comparing a group of experimental units or subjects to each point in the matrix.

The antibacterial active agents or compositions can be formed into dosage unit forms, such as for example, creams, ointments, lotions, powders, liquids, tablets, capsules, suppositories, sprays, aerosols or the like. If the antibacterial composition is formulated into a dosage unit form, the dosage unit form may contain an antibacterial effective amount of active agent. Alternatively, the dosage unit form may include less than such an amount if multiple dosage unit forms or multiple dosages are to be used to administer a total dosage of the active agent. Dosage unit forms can include, in addition, one or more excipient(s), diluent(s), disintegrant(s), lubricant(s), plasticizer(s), colorant(s), dosage vehicle(s), absorption enhancer(s), stabilizer(s), bactericide(s), or the like.

For general information concerning formulations, see, e.g., Gilman et al. (eds.), 1990 , Goodman and Gilman's: The Pharmacological Basis of Therapeutics , 8th ed., ergamon Press; and Remington's Pharmaceutical Sciences , 17th ed., 1990, Mack publishing Co., Easton, Pa.; Avis et al. (eds.), 1993 , Pharmaceutical Dosage Forms: parenteral Medications , Dekker, New York; Liebermnan et al (eds.), 1990 , Pharmaceutical osage Forms: Disperse Systems , Dekker, New York.

The antibacterial agents and compositions of the present invention are useful for reventing or treating S. pneumoniae infections. Infection prevention methods incorporate a prophylactically effective amount of an antibacterial agent or composition. A prophylactically effective amount is an amount effective to prevent S. pneumoniae infection and will depend upon the specific bacterial strain, the agent, and the host. These amounts can be determined experimentally by methods known in the art and as described above.

S. pneumoniae infection treatment methods incorporate a therapeutically effective amount of an antibacterial agent or composition. A therapeutically effective amount is an amount sufficient to ameliorate or eliminate the infection. The prophylactically and/or therapeutically effective amounts can be administered in one administration or over repeated administrations. Therapeutic administration can be followed by prophylactic administration, once the initial bacterial infection has been resolved.

The antibacterial agents and compositions can be administered topically or systemically. Topical application is typically achieved by administration of creams, ointments, lotions, or sprays as described above. Systemic administration includes both oral and parental routes. Parental routes include, without limitation, subcutaneous, intramuscular, intraperitoneal, intravenous, transderrnal, inhalation and intranasal administration.

EXEMPLIFICATION

I. Cloning and Sequencing of S. pneumoniae DNA

S. pneumoniae chromosomal DNA was isolated according to a basic DNA protocol outlined in Schleif R. F. and Wensink P. C., Practical Methods in Molecular Biology, p.98, Springer-Verlag, NY., 1981, with minor modifications. Briefly, cells were pelleted, resuspended in TE (10 mM Tris, 1 mM EDTA, pH 7.6) and GES lysis buffer (5.1 M guanidium thiocyanate, 0. 1 M EDTA, pH 8.0, 0.5% N-laurylsarcosine) was added. Suspension was chilled and ammonium acetate (NH4Ac) was added to final concentration of 2.0 M. DNA was extracted, first with chloroform, then with phenol-chloroform, and reextracted with chloroform. DNA was precipitated with isopropanol, washed twice with 70% EtOH, dried and resuspended in TE.

Following isolation whole genomic S. pneumoniae DNA was nebulized (Bodenteich et al., Automated DNA Sequencing and Analysis (J. C. Venter, ed.), Academic Press, 1994) to a median size of 2000 bp. After nebulization, the DNA was concentrated and separated on a standard 1% agarose gel. Several fractions, corresponding to approximate sizes 1000-1500 bp, 1500-2000 bp, 2000-2500 bp, 2500-3000bp, were excised from the gel and purified by the GeneClean procedure (Bio101, Inc.).

The purified DNA fragments were then blunt-ended using T4 DNA polymerase. The healed DNA was then ligated to unique BstXI-linker adapters (5′ GTCTTCACCACGGGG and 5′ GTGGTGAAGAC in 100-1000 fold molar excess). These linkers are complimentary to the BstXI-cut pMPX vectors, while the overhang is not self-complimentary. Therefore, the linkers will not concatemerize nor will the cut-vector religate itself easily. The linker-adopted inserts were separated from the unincorporated linkers on a 1% agarose gel and purified using GeneClean. The linker-adopted inserts were then ligated to each of 20 pMPX vectors to construct a series of “shotgun” subclone libraries. Blunt ended vector was used for cloning into the PUC 19 vector. The vectors contain an out-of-frame lacZ gene at the cloning site which becomes in-frame in the event that an adapter-dimer is cloned, allowing these to be avoided by their blue-color.

All subsequent steps were based either on the multiplex DNA sequencing protocols outlined in Church G. M. and Kieffer-Higgins S., Science 240:185-188, 1988 or by AB1377 automated DNA sequencing methods. Only major modifications to the protocols are highlighted. Briefly, each of the 20 vectors was then transformed into DH5a competent cells (Gibco/BRL, DH5a transformation protocol). The libraries were assessed by plating onto antibiotic plates containing ampicillin, methicillin and IPTG/Xgal. The plates were incubated overnight at 37° C. Successful transformants were then used for plating of clones and pooling into the multiplex pools. The clones were picked and pooled into 40 ml growth medium cultures. The cultures were grown overnight at 37° C. DNA was purified using the Qiagen Midi-prep kits and Tip-100 columns (Qiagen, Inc.). In this manner, 100 mg of DNA was obtained per pool.

These purified DNA samples were then sequenced either using the multiplex DNA sequencing based on chemical degradation methods (Church G. M. and Kieffer-Higgins S., Science 240:185-188,1988) or by Sequithrem (Epicenter Technologies) dideoxy sequencing protocols or by ABI dye-terminator chemistry. For the multiplex portion the sequencing reactions were electrophoresed and transferred onto nylon membranes by direct transfer electrophoresis from 40 cm gels (Richterich P. and Church G. M., Methods in Enzymology 218:187-222, 1993). The DNA was covalently bound to the membranes by exposure to ultraviolet light, and hybridized with labeled oligonucleotides complimentary to tag sequences on the vectors (Church, supra). The nmembranes were washed to rinse off non-specifically bound probe, and exposed to X-ray film to visualize individual sequence ladders. After autoradiography, the hybridized probe was removed by incubation at 65° C., and the hybridization cycle repeated with another tag sequence until the membrane had been probed 41 times. Thus, each gel produced a large number of films, each containing new sequencing information. Whenever a new blot was processed, it was initially probed for an internal standard sequence added to each of the pools. Digital images of the films were generated using a laser-scanning densitometer (Molecular Dynamics, Sunnyvale, Calif.). The digitized images were processed on computer workstations (VaxStation 4000's) using the program REPLICA™ (Church et al., Automated DNA Sequencing and Analysis (J. C. Venter, ed.), Academic Press, 1994). Image processing included lane straightening, contrast adjustment to smooth out intensity differences, and resolution enhancement by iterative gaussian deconvolution. The sequences were then converted to an SCF format so that processing and assembly could proceed on UNIX machines. The ABI dye terminator sequence reads were run on ABI377 machines and the data was directly transferred to UNIX machinnes following lane tracking of the gels. All multiplex and ABI reads were assembled using PHRAP (P. Green, Abstracts of DOE Human Genome Program Contractor-Grantee Workshop V, Jan. 1996, p.157) with default parameters and not using quality scores. The initial assembly was done at 7fold coverage and yielded 511 contigs. Short read length fragments of 200 bp or less found on the ends of contigs facing in the appropriate direction were used to extendoff the end of the contigs. These reads were then resequenced with primers using ABI technology to give sequences with a read length of 500 or more bases. This allowed end extensions to be performed without ordering new primers. In addition, missing mates (sequences from clones that only gave one strand reads) were identified and sequenced with ABI technology to allow the identification of additional overlapping contigs.

End-sequencing of randomly picked genomic lambda was also performed. Sequencing on a both sides was done for all lambda sequences. The lambdalibrary backbone helped to verify the integrity of the assembly and allowed closure of some of the physical gaps.

To identify S. pneumoniae polypeptides the complete genomic sequence of S. pneumoniae were analyzed essentially as follows: First, all possible stop-to-stop pen reading frames (ORFs) greater than 180 nucleotides in all six reading frames were translated into amino acid sequences. Second, the identified ORFs were analyzed for homology to known (archeabacter, prokaryotic and eukaryotic) protein sequences. Third, the coding potential of non-homologous sequences were evaluated with the program GENEMARK™ (Borodovsky and Mclninch, 1993, Comp. Chem. 17:123).

Identification, Cloning and Expression of S. pneumoniae Nucleic Acids

Expression and purification of the S. pneumoniae polypeptides of the invention can be performed essentially as outlined below.

To facilitate the cloning, expression and purification of membrane and secreted proteins from S. pneumoniae , a gene expression system, such as the pET System (Novagen), for cloning and expression of recombinant proteins in E. coli , is selected. Also, a DNA sequence encoding a peptide tag, the His-Tag, is fused to the 3′ end of DNA sequences of interest in order to facilitate purification of the recombinant protein products. The 3′ end is selected for fusion in order to avoid alteration of any 5′ terminal signalsequence.

PCR Amplification and Cloning of Nucleic Acids Containing ORF's Encoding Enzymes

Nucleic acids chosen (for example, from the nucleic acids set forth in SEQ ID NO: 1-SEQ ID NO: 2603) for cloning from the 14453 strain of S. pneumoniae are prepared for amplification cloning by polymerase chain reaction (PCR). Synthetic oligonucleotide primers specific for the 51 and 31 ends of open reading frames (ORFs) are designed and purchased from GibcoBRL Life Technologies (Gaithersburg, MD, USA). All forward primers (specific for the 5+ end of the sequence) are designed to include an NcoI cloning site at the extreme 5′ terminus. These primers are designed to permit initiation of protein translation at a methionine residue followed by a valine residue and the coding sequence for the remainder of the native S. pneumoniae DNA sequence. All reverse primers (specific for the 3′ end of any S. pneumoniae ORF) include a EcoRI site at the extreme 5′ terminus to permit cloning of each S. pneumoniae sequence into the reading frame of the pET-28b. The pET-28b vector provides sequence encoding an additional 20 carboxy-terminal amino acids including six histidine residues (at the extreme C-terminus), which comprise the His-Tag.

Genomic DNA prepared from strain 14453 of S. pneumoniae is used as the source of template DNA for PCR amplification reactions (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). To amplify a DNA sequence containing an S. pneumoniae ORF, genomic DNA (50 nanograms) is introduced into a reaction vial containing 2 mM MgCl 2 , 1 micromolar synthetic oligonucleotide primers (forward and reverse primers) complementary to and flanking a defined S. pneumoniae ORF, 0.2 mM of each deoxynucleotide triphosphate; dATP, dGTP, dCTP, dTTP and 2.5 units of heat stable DNA polymerase (Amplitaq, Roche Molecular Systems, Inc., Branchburg, N.J., USA) in a final volume of 100 microliters.

Upon completion of thermal cycling reactions, each sample of amplified DNA is washed and purified using the Qiaquick Spin PCR purification kit (Qiagen, Gaithersburg, Md., USA). All amplified DNA samples are subjected to digestion with the restriction endonucleases, e.g., NcoI and EcoRI (New England BioLabs, Beverly, Mass., USA)(Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). DNA samples are then subjected to electrophoresis on 1.0% NuSeive (FMC BioProducts, Rockland, Me. USA) agarose gels. DNA is visualized by exposure to ethidium bromide and long wave uv irradiation. DNA contained in slices isolated from the agarose gel is purified using the Bio 101 GeneClean Kit protocol (Bio-101 Vista, Calif., USA).

Cloning of S. pneumoniae Nucleic Acids into an Expression Vector

The pET-28b vector is prepared for cloning by digestion with endonucleases, e.g., NcoI and EcoRI (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). The pET-28a vector, which encodes a His-Tag that can be fused to the 5′ end of an inserted gene, is prepared by digestion with appropriate restriction endonucleases.

Following digestion, DNA inserts are cloned (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994) into the previously digested pET-28b expression vector. Products of the ligation reaction are then used to transform the BL21 strain of E. coli (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994) as described below.

Transformation of Competent Bacteria with Recombinant Plasmids

Competent bacteria, E coli strain BL21 or E. coli strain BL12(DE3), are transformed with recombinant pET expression plasmids carrying the cloned S. pneumoniae sequences according to standard methods (Current Protocols in Molecular, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). Briefly, 1 microliter of ligation reaction is mixed with 50 microliters of electrocompetent cells and subjected to a high voltage pulse, after which, samples are incubated in 0.45 milliliters SOC medium (0.5% yeast extract, 2.0% tryptone, 10 mM NaCl, 2.5 mM KCl, 10 mM MgCl2, 10 mM MgSO4 and 20, mM glucose) at 37° C. with shaking for 1 hour. Samples are then spread on LB agar plates containing 25 microgram/ml kanamycin sulfate for growth overnight. Transformed colonies of BL21 are then picked and analyzed to evaluate cloned inserts as described below.

Identification Of Recombinant Expression Vectors with S. pneumoniae Nucleic Acids Individual BL21 clones transformed with recombinant pET-28b S. pneumoniae ORFs are analyzed by PCR amplification of the cloned inserts using the same forward and reverse primers, specific for each S. pneumoniae sequence, that were used in the original PCR amplification cloning reactions. Successful amplification verifies the integration of the S. pneumoniae sequences in the expression vector (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994).

Isolation and Preparation of Nucleic Acids from Transformants

Individual clones of recombinant pET-28b vectors carrying properly cloned S. pneumoniae ORFs are picked and incubated in 5 mls of LB broth plus 25 microgram/ml kanamycin sulfate overnight. The following day plasmid DNA is isolated and purified using the Qiagen plasmid purification protocol (Qiagen Inc., Chatsworth, Calif., USA).

Expression Of Recombinant S. pneumoniae Sequences In E. coli

The pET vector can be propagated in any E. coli K-12 strain e.g. HMS174, HB101, JM109, DH5, etc. for the purpose of cloning or plasmid preparation. Hosts for expression include E. coli strains containing a chromosomal copy of the gene for T7 RNA polymerase. These hosts are lysogens of bacteriophage DE3, a lambda derivative that carries the lacl gene, the lacUV5 promoter and the gene for T7 RNA polymerase. T7 RNA polymerase is induced by addition of isopropyl-B-D-thiogalactoside (IPTG), and the T7 RNA polymerase transcribes any target plasmid, such as pET-28b, carrying its gene of interest. Strains used include: BL21(DE3) (Studier, F. W., Rosenberg, A. H., Dunn, J. J., and Dubendorff, J. W. (1990) Meth. Enzymol. 185, 60-89).

To express recombinant S. pneumoniae sequences, 50 nanograms of plasmid DNA isolated as described above is used to transform competent BL21(DE3) bacteria as described above (provided by Novagen as part of the pET expression system kit). The lacZ gene (beta-galactosidase) is expressed in the pET-System as described for the S. neumoniae recombinant constructions. Transformed cells are cultured in SOC medium for 1 hour, and the culture is then plated on LB plates containing 25 micrograms/ml kanamycin sulfate. The following day, bacterial colonies are pooled and grown in LB medium containing kanamycin sulfate (25 micrograms/ml) to an optical density at 600 nM of 0.5 to 1.0 O. D. units, at which point, 1 millimolar IPTG was added to the culture for 3 hours to induce gene expression of the S. pneumoniae recombinant DNA constructions .

After induction of gene expression with IPTG, bacteria are pelleted by centrifugation in a Sorvall RC-3B centrifuge at 3500×g for 15 minutes at 4° C. Pellets are resuspended in 50 milliliters of cold 10 mM Tris-HCl, pH 8.0, 0.1 M NaCl and 0.1 mM EDTA (STE buffer). Cells are then centrifuged at 2000×g for 20 min at 4° C. Wet pellets are weighed and frozen at −80° C. until ready for protein purification.

A variety of methodologies known in the art can be utilized to purify the isolated proteins. (Current Protocols in Protein Science, John Wiley and Sons, Inc., J. E. Coligan et al., eds., 1995). For example, the frozen cells may be thawed, resupended in buffer and ruptured by several passages through a small volume microfluidizer (Model M-110S, Microfluidics International Corporation, Newton, Mass.). The resultant homogenate may be centrifuged to yield a clear supernatant (crude extract) and following filtration the crude extract may be fractionated over columns. Fractions may be monitored by absorbance at 0D 280 nm. and peak fractions may analyzed by SDS-PAGE The concentrations of purified protein preparations may be quantified spectrophotometrically using absorbance coefficients calculated from amino acid content (Perkins, S. J. 1986 Eur. J. Biochem. 157, 169-180). Protein concentrations are also measured by the method of Bradford, M. M. (1976) Anal. Biochem. 72, 248-254, and Lowry, O. H., Rosebrough, N., Farr, A. L. & Randall, R. J. (1951) J. Biol. Chem . 193, pages 265-275, using bovine serum albumin as a standard.

SDS-polyacrylamide gels of various concentrations may be purchased from BioRad (Hercules, Calif., USA), and stained with Coomassie blue. Molecular weight markers may include rabbit skeletal muscle myosin (200 kDa), E. coli (-galactosidase (116 kDa), rabbit muscle phosphorylase B (97.4 kDa), bovine serum albumin (66.2 kDa), ovalbumin (45 kDa), bovine carbonic anhydrase (31 kDa), soybean trypsin inhibitor (21.5 kDa), egg white lysozyme (14.4 kDa) and bovine aprotinin (6.5 kDa).

EQUIVALENTS

Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments and methods described herein. The specific embodiments described herein are offered by way of example only, and the invention is to limited only by the terms of the appended claims, along with the full scope of equivalents to which such claims are entitled.

TABLE 2
	NT Seq	AA Seq	NT Orf	AA Orf
Orf	ID	ID	Length	Length	Score	Probability	Description
10000807_f1_4	1	2604	261	86	103	5.10E−05	[ac:p46330] [gn:yxat:e3a] [or: bacillus subtilis ] [de:hypothetical 44.3 kd protein in gntr-
							htpg intergenic region] [sp:p46330] [db:swissprot]
10005340_f1_3	2	2605	309	102	115	1.20E−06	[ln:vfu65015] [ac:u65015] [pn:pts permease for mannose subunit iipman] [gn:many]
							[or: vibrio furnissii ] [db:genpept-bct] [de: vibrio furnissii pts permease for mannose
							subunits iiiman cterminal domain (manx), iipman (many), iibman (manz), and iii mann-
							termin
10015950_c2_69	3	2606	192	63	74	0.027	[ln:celc42d8] [ac:u56966] [gn:c42d8.4] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c42d8.]
							[nt:contains strong similarity to ets domains] [le:830:943:1105:2314] [re:895:1052:
10031875_f2_12	4	2607	903	300	570	2.30E−55	[ln:lclact] [ac:z80834] [pn:lact] [gn:lact] [fn:antiterminator protein] [or: lactobacillus
							casei ] [db:genpept-bct] [de: l.casei lact gene.]-[le:498] [re:1376] [di:direct]
10032760_f2_22	5	2608	696	231	400	2.40E−37	[ac:p35159] [gn:ypul] [or: bacillus subtilis ] [de:hypothetical 26.0 kd protein in spmb-
							aroc intergenic region (orfx13)] [sp:p35159] [db:swissprot]
10032760_f3_36	6	2609	510	169	307	1.70E−27	[ac:p36088] [gn:yk1069w:yk1340] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 19.7 kd protein in lhs1-nup100 intergenic region] [sp:p36088]
							[db:swissprot]
10035337_f1_1	7	2610	276	91	105	6.10E−06	[ac:c69844] [pn:hypothetical protein yjbk] [gn:yjbk] [or:bacillus subtilis] [db:pir]
10039713_f3_16	8	2611	369	122	347	9.90E−32	[ac:p33138] [gn:clpx:lopc] [or: escherichia coli ] [de:atp-dependent clp protease atp-
							binding subunit clpx] [sp:p33138] [db:swissprot]
10042337_f1_1	9	2612	924	307	559	3.40E−54	[ac:a69998] [pn:hypothetical protein ytoi] [gn:ytoi] [or:bacillus subtilis] [db:pir]
10042937_f1_5	10	2613	432	143	98	0.0028	[ac:p33322] [gn:cbf5:ylr175w:19470.11] [or: saccharomyces cerevisiae ] [sr:,baker's
							yeast] [de:centromere/microtubule binding protein cbf5 (p64′)] [sp:p33322]
10049155_c1_28	11	2614	330	109	65	0.073	[ac:d69309] [pn:conserved hypothetical protein af0476] [or: archaeoglobus fulgidus ]
							[db:pir]
10049155_c2_27	12	2615	330	109	65	0.073	[ac:d69309] [pn:conserved hypothetical protein af0476] [or: archaeoglobus fulgidus ]
							[db:pir]
10049155_c3_36	13	2616	330	109	65	0.073	[ac:d69309] [pn:conserved hypothetical protein af0476] [or: archaeoglobus fulgidus]
							[db:pir]
10049155_c3_53	14	2617	330	109	65	0.073	[ac:d69309] [pn:conserved hypothetical protein af0476] [or: archaeoglobus fulgidus ]
							[db:pir]
10054818_f3_9	15	2618	1533	510	2538	6.60E−264	[ac:p18793] [gn:amic] [or: streptococcus pneumoniae ] [de:oligopeptide transport
							permease protein amic] [sp:p18793] [db:swissprot]
10055437_f3_1	16	2619	1080	359	131	6.10E−06	[ln:u00796] [ac:u00796] [pn:g5 orf] [or: dictyostelium discoideum ] [db:genpept-pln]
							[de: dictyostelium discoideum plasmid ddp1 d2 orf, d1 orf, g6 orf, g5orf, g1 orf, and g2
							orfs, complete cds.] [le:8256:9040] [re:8980:9292] [di:complementjoin]
10156277_f1_15	17	2620	264	87	70	0.024	[ln:scdnch2] [ac:x79489] [pn:f-131 protein] [gn:yb10831] [or: saccharomyces cerevisiae ]
							[sr:baker's yeast] [db:genpept-pln] [de: s.cerevisiae genomic dna, chromosome ii from y
							element to ils1gene.] [le:35120] [re:35515] [di:complement]
10172162_c3_24	18	2621	213	70	91	0.00035	[ac:e69844] [pn:gtp pyrophosphokinase homolog yjbm] [gn:yjbm] [or: bacillus subtilis ]
							[db:pir]
10187632_f1_2	19	2622	375	124	246	5.00E−21	[ac:h69278] [pn:glutamine abc transporter, permease protein (glnp) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
10195200_f2_7	20	2623	996	331	1534	1.60E−157	[ac:p18766] [gn:amif] [or: streptococcus pneumoniae ] [de:oligopeptide transport atp-
							binding protein amif] [sp:p18766] [db:swissprot]
10238201_c3_37	21	2624	309	102	186	3.20E−14	[ac:p23861] [gn:potd] [or: escherichia coli ] [de:spermidine/putrescine-binding
							periplasmic protein precursor(spbp)] [sp:p23861] [db:swissprot]
10239000_c1_22	22	2625	201	66	70	0.092	[ln:pfcompirb] [ac:x95276] [gn:rps5] [or: plasmodium falciparum ] [sr:malaria parasite]
							[db:genpept-inv] [de: p.falciparum complete gene map of plastid-like dna (ir-b).]
							[le:6402] [re:7121] [di:direct]
10270313_c2_18	23	2626	390	129	333	3.00E−30	[ln:spu11799] [ac:u11799] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes insertion sequence is1239 putativetransposase gene,
							complete cds.] [nt:putative transposase] [le:379] [re:1359] [di:direct]
10270313_c2_86	24	2627	1107	368	1143	4.40E−116	[ln:spu11799] [ac:u11799] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes insertion sequence is1239 putativetransposase gene,
							complete cds.] [nt:putative transposase] [le:379] [re:1359] [di:direct]
10270313_f1_6	25	2628	390	129	333	3.00E−30	[ln:spu11799] [ac:u11799] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes insertion sequence is 1239 putativetransposase gene,
							complete cds.] [nt:putative transposase] [le:379] [re:1359] [di:direct]
10270313_f3_9	26	2629	456	151	419	2.30E−39	[ln:spu11799] [ac:u11799] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes insertion sequence is 1239 putativetransposase gene,
							complete cds.] [nt:putative transposase] [ie:379] [re:1359] [di:direct]
10275701_f1_3	27	2630	528	175	251	1.50E−21	[ac:p17893] [gn:ahrc] [or: bacillus subtilis ] [de:arginine hydroximate resistance protein]
							[sp:p17893] [db:swissprot]
10281883_f3_55	28	2631	234	77	62	0.0032	[ac:b35136] [pn:hypothetical protein (endoglucanase 5'region)] [or: bacillus polymyxa ]
							[db:pir]
10290678_c3_83	29	2632	1788	595	1291	9.10E−132	[ac:a69829] [pn:abc transporter (atp-binding protein) homolog yhei] [gn:yhei]
							[or: bacillus subtilis ] [db:pir]
1031251_f3_48	30	2633	309	102	70	0.72	[ac:p08703] [gn:pcbc:ips] [or: penicillium chrysogenum ] [de:isopenicillin n synthetase
							(ipns)] [sp:p08703] [db:swissprot]
10318750_c1_35	31	2634	339	112	294	4.10E−26	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
10329191_c2_30	32	2635	474	157	321	5.60E−29	[ln:lpplsabkr] [ac:y15127] [pn:response regulator protein] [gn:plsr] [or: lactobacillus
							plantarum ] [db:genpept-bct] [de: lactobacillus plantarum plsa, plsb, plsk & plsr genes.]
							[le:3837] [re:4598] [di:direct]
103325_c2_22	33	2636	771	256	663	3.20E−65	[ac:p41006] [gn:pyrp] [or: bacillus caldolyticus ] [de:uracil permease (uracil transporter)]
							[sp:p41006] [db:swissprot]
10350262_f3_26	34	2637	204	67	64	0.16	[ac:e69073] [pn:nadp-reducing hydrogenase, subunit a] [gn:mth1548]
							[or: methanobacterium thermoautotrophicum ] [db:pir]
10350800_c2_103	35	2638	465	154	102	0.0013	[ac:e69878] [pn:rna-binding sun protein homolog ylom] [gn:ylom] [or: bacillus subtilis ]
							[db:pir]
10351687_c1_48	36	2639	768	255	1130	1.10E−114	[ac:s49544] [pn:response regulator] [cl:response regulator homology] [or: streptococcus
							pneumoniae] [db:pir]
10353402_f2_8	37	2640	954	317	394	1.00E−36	[ln:af015453] [ac:af015453] [pn:unknown] [or: lactobacillus rhamnosus ] [db:genpept-
							bct] [de: lactobacillus rhamnosus 6-phospho-beta-glucosidase homolog gene,partial cds;
							gntr transcriptional regulator homolog and surfacelocated protein genes, complete cds.]
10354500_c3_137	38	2641	198	65	164	2.50E−12	[ln:shu75349] [ac:u75349] [pn:putative permease shie] [or:serpulina hyodysenteriae]
							[db:genpept-bct] [de: serpulina hyodysenteriae shi operon, periplasmic-iron-
							bindingproteins shia and shib, putative abc transporter shic, and putativepermeases shid
							and shi
1037580_c1_54	39	2642	1764	587	514	2.00E−49	[ac:g70002] [pn:hypothetical protein ytwp] [gn:ytwp] [or: bacillus subtilis ] [db:pir]
10391450_f2_6	40	2643	273	90	83	0.00093	[ln:ehy14328] [ac:y14328] [pn:3c1 protein] [or: entamoeba histolytica ] [db:genpept-inv]
							[de: entamoeba histolytica mrna for 3e1 protein.] [le:32] [re:418] [di:direct]
10391530_f1_2	41	2644	231	76	62	0.18	[ln:chy14328] [ac:y14328] [pn:3e1 protein] [or: entamoeba histolytica ] [db:genpept-inv]
							[de: entamoeba histolytica mrna for 3e1 protein.] [le:32] [re:418] [di:direct]
10398436_c2_56	42	2645	225	74	67	0.28	[ln:ab003175] [ac:ab003175] [pn:alternative oxidase] [gn:aox1c] [or: arabidopsis
							thaliana ] [sr: arabidopsis thaliana (strain:columbia) 4.5-week-old leaves an] [db:genpept-
							pln] [de: arabidopsis thaliana dna for alternative oxidase (aox1c gene),complete cds.]
10401931_f3_41	43	2646	1080	359	326	1.70E−29	[ln:ae001169] [ac:ae001169:ae000783] [pn:mevalonate pyrophosphate decarboxylase]
							[gn:bb0686] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 55 of 70) of the complete genome.] [nt:similar to
							sp:p32
10429651_f1_10	44	2647	402	133	40	0.12	[ac:p14073] [or:butyribacterium methylotrophicum] [de:ferredoxin] [sp:p14073]
							[db:swissprot]
10431169_c1_15	45	2648	324	107	238	1.00E−19	[ln:af044978] [ac:af044978] [pn:putative uracil permease] [gn:pyrp] [or: enterococcus
							faecalis ] [db:genpept] [de: enterococcus faecalis pyr operon: attenuation regulatory
							protein(pyrr) and putative uracil permease (pyrp) genes, complete cds; andaspartate tr
10442057_f1_12	46	2649	918	305	528	6.50E−51	[ac:p37565] [gn:yacc] [or: bacillus subtilis ] [de:hypothetical 31.8 kd protein in ftsh-cysk
							intergenic region] [sp:p37565] [db:swissprot]
10443750_f2_2	47	2650	606	201	117	1.90E−05	[ac:d69991] [pn:conserved hypothetical protein yteu] [gn:yteu] [or: bacillus subtilis ]
							[db:pir]
104557_c1_42	48	2651	924	307	1361	3.50E−139	[ln:af036951] [ac:af036951] [pn:choline kinase] [gn:pck] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae choline kinase (pck) gene,
							complete cds.] [nt:similar to lica, the choline kinase of haemophilus] [le:92] [re:880]
1048537_f1_8	49	2652	318	105	202	2.30E−16	[ac:a69881] [pn:conserved hypothetical protein ylua] [gn:ylua] [or: bacillus subtilis ]
							[db:pir]
1050911_c2_29	50	2653	234	77	66	0.3	[ln:s82314] [ac:s82314] [pn:prm 3] [gn:prm 3] [or:zea mays] [sr:maize leaves cv. inra
							258 mercuric chloride-treated] [db:genpept-pln] [de:prm 3=chitinase {clone chem 5}
							[zea mays=maize, cv. inra 258,mercuric chloride-treated, leaves, mrna partial, 945 nt]
1053328_c2_13	51	2654	225	74	320	7.20E−29	[ac:q03159] [gn:epua] [or: streptococcus pneumoniae ] [de:epua protein] [sp:q03159]
							[db:swissprot]
10548517_f1_1	52	2655	648	215	616	3.10E−60	[ac:p50854] [gn:ribe:ribb] [or: actinobacillus pleuropneumoniae ] [sr:, haemophilus
							pleuropneumoniae ] [ec:2.5.1.9] [de:riboflavin synthase alpha chain,] [sp:p50854]
							[db:swissprot]
10549082_f1_2	53	2656	396	131	454	4.50E−43	[ac:p23532] [gn:lacf] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.7.1.69] [de:(ec 2.7.1.69) (eiii-lac)] [sp:p23532] [db:swissprot]
10550837_f2_6	54	2657	546	181	359	5.30E−33	[ac:p42904:p76669] [gn:agav] [or: escherichia coli ] [ec:2.7.1.69] [de:enzyme ii, b
							component 2),] [sp:p42904:p76669] [db:swissprot]
10552163_f3_20	55	2658	1413	470	65	0.58	[ac:p34859] [gn:nd41] [or: apis mellifera ] [sr:,honeybee] [ec:1.6.5.3] [de:nadh-
							ubiquinone oxidoreductase chain 41,] [sp:p34859] [db:swissprot]
10554711_c3_51	56	2659	309	102	215	9.60E−18	[ac:p32726] [gn:ylxs] [or: bacillus subtilis ] [de:hypothetical 17.6 kd protein in nusa
							5'region (p15a) (orf1)] [sp:p32726] [db:swissprot]
10554712_f1_4	57	2660	372	123	62	0.17	[ac:q32643] [gn:mtatp8:atp8] [or: capra hircus ] [sr:,goat] [ec:3.6.1.34] [de:atp synthase
							protein 8, (a61)] [sp:q32643] [db:swissprot]
10555417_f3_44	58	2661	228	75	196	1.50E−15	[ac:p06653] [gn:lyta] [or: streptococcus pneumoniae ] [ec:3.5.1.28] [de:hydrolase)
							(mucopeptide aminohydrolase) (cell wall hydrolase)] [sp:p06653] [db:swissprot]
10558150_f3_10	59	2662	999	332	576	5.30E−56	[ln:atceld] [ac:z77855] [pn:sugar-binding transport protein] [or: anaerocellum
							thermophilum ] [db:genpept-bct] [de: a.thermophilum celd gene.] [nt:putative] [le:3925]
							[re:4836] [di:direct]
10563175_f3_20	60	2663	921	306	1291	9.10E−132	[ac:q04699] [gn:mald] [or: streptococcus pneumoniae ] [de:maltodextrin transport system
							permease protein mald] [sp:q04699] [db:swissprot]
10570200_f1_9	61	2664	1272	423	1336	1.60E−136	[ac:f70019] [pn:nifs protein homolog homolog yurw] [gn:yurw] [or: bacillus subtilis ]
							[db:pir]
10572212_c3_25	62	2665	213	70	56	0.63	[ac:p54806] [or: methanosarcina barkeri ] [de:nitrogen fixation nifhd2 region glnb-like
							protein 2 (orf-125)] [sp:p54806] [db:swissprot]
10578257_c2_16	63	2666	195	64	162	1.80E−11	[ac:p17556] [or: bacillus sphaericus ] [ec:1.4.1.1] [de:alanine dehydrogenase,]
							[sp:p17556] [db:swissprot]
1057950_f1_4	64	2667	330	109	213	1.60E−17	[ac:a64499] [pn:phosphoserine phosphatase,] [cl:phosphoserine phosphatase]
							[or: methanococcus jannaschii ] [ec:3.1.3.3] [db:pir] [mp:for1565667-1566302]
10594431_f2_27	65	2668	267	88	80	0.026	[ac:s16594] [pn:regulatory protein b-peru] [or:zea mays] [sr:, maize] [db:pir]
10602337_f2_2	66	2669	609	202	91	0.044	[ac:p37082] [gn:sora] [or: klebsiella pneumoniae ] [de:permease iic component)
							(phosphotransferase enzyme ii, c component)] [sp:p37082] [db:swissprot]
10603187_f2_8	67	2670	357	118	66	1	[ln:ljrab11g] [ac:z73955] [pn:rab11] [gn:rab11g] [fn:gtp-binding protein] [or: lotus
							japonicus ] [db:genpept-pln] [de: l.japonicus mrna for small gtp-binding protein, rab11g.]
							[le:83] [re:742] [di:direct]
10603537_f2_6	68	2671	231	77	58	0.89	[ac:p36278] [gn:v2] [or:tomato yellow leaf curl virus] [sr:australia,tylcv] [de:coat
							protein] [sp:p36278] [db:swissprot]
10625302_c3_150	69	2672	294	97	90	0.0014	[ln:af013583] [ac:af013583] [pn:putative o-antigen translocase] [gn:wzx]
							[or: escherichia coli ] [db:genpept-bct] [de: escherichia coli putative o-antigen polymerase
							(wzy), putativeo-antigen translocase (wzx), putative glcnac transferase, and n andc
10625308_c2_95	70	2673	216	71	55	0.58	[ln:pcu34351] [ac:u34351] [pn:glycoprotein a] [or: pneumocystis carinii ] [db:genpept-
							pln] [de: pneumocystis carinii human isolate glycoprotein a gene, partialcds.] [nt:gpa]
							[le:<1] [re:
10626307_c3_103	71	2674	315	104	47	1	[ln:hivenv30a] [ac:121822] [pn:envelope glycoprotein] [gn:env] [or:human
							immunodeficiency virus type 1] [sr:human immunodeficiency virus type 1
							(individual_isolate patient a] [db:genpept-vrl] [de:human immunodeficiency virus type
							1 (30) envelope glycoprot
10626525_c2_15	72	2675	405	134	250	1.90E−21	[ac:q45399] [gn:cela] [or: bacillus stearothermophilus ] [ec:2.7.1.69] [de:(ec 2.7.1.69)]
							[sp:q45399] [db:swissprot]
10631382_f3_7	73	2676	702	233	390	2.70E−36	[ac:p54176] [or: bacillus cercus ] [de:hemolysin iii (hly-iii)] [sp:p54176] [db:swissprot]
10632717_c3_88	74	2677	453	150	114	150E−06	[ln:sa1234] [ac:x97985] [or: staphylococcus aureus ] [db:genpept-bct] [de: s.aureus orfs
							1,2,3 & 4.] [nt:orf1] [le:537] [re:1304] [di:direct]
10635080_f1_9	75	2678	843	280	479	1.00E−45	[ac:g69597] [pn:phosphatidate cytidylyltransferase cdsa] [gn:cdsa] [or: bacillus subtilis ]
							[db:pir]
1064042_c2_28	76	2679	246	81	62	0.12	[ln:cicos41] [ac:z83760] [pn:cos41.1] [or: ciona intestinalis ] [db:genpept-inv] [de: ciona
							intestinalis dna sequence from cosmid cos41.] [nt:similar to dna excision repair protein]
							[le:5005] [re:7386] [di:direct]
10640681_c1_5O	77	2680	420	139	71	0.5	[ln:ehy14328] [ac:y14328] [pn:3e1 protein] [or: entamoeba histolytica ] [db:genpept-inv]
							[de: entamoeba histolytica mrna for 3e1 protein.] [le:32] [re:418] [di:direct]
10650207_f2_2	78	2681	507	169	594	6.60E−58	[ac:q07636] [gn:pfka:pfk] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.7.1.11] [de:(phosphohexokinase)] [sp:q07636] [db:swissprot]
10657137_c1_67	79	2682	552	183	153	1.20E−10	[ac:p20665] [gn:piv] [or:moraxella bovis] [de:pilin gene inverting protein (pivml)]
							[sp:p20665] [db:swissprot]
10664092_f2_21	80	2683	333	110	154	8.70E−111	[ac:p39140] [gn:deor] [or: bacillus subtilis ] [de:deoxyribonucleoside regulator]
							[sp:p39140] [db:swissprot]
10683128_f3_35	81	2684	459	152	119	2.70E−06	[ln:tnaf00605] [ac:af000605] [pn:insect intestinal mucin iim14] [or:trichoplusia ni]
							[sr:cabbage looper] [db:genpept-inv] [de:trichoplusia ni insect intestinal mucin iim14
							mrna, complcte cds.] [le:38] [re:2404] [di:direct]
1070277_f2_33	82	2685	555	184	479	1.00E−45	[ac:s62019] [pn:hypothetical protein ydr540c:hypothetical protein d3703.8]
							[or: saccharomyces cerevisiae ] [db:pir] [mp:4r]
1072138_c3_65	83	2686	1293	430	881	2.60E−88	[ac:h69627] [pn:signal recognition particle ftsy] [gn:ftsy] [or: bacillus subtilis ] [db:pir]
1072885_c1_9	84	2687	381	126	210	3.30E−17	[ac:p46319] [gn:celc] [or: bacillus subtilis ] [ec:2.7.1.69] [de:(ec 2.7.1.69) (eiii-cel)]
							[sp:p46319] [db:swissprot]
10737661_f3_14	85	2688	585	194	264	6.20E−23	[ac:p42313] [gn:yxjb:n15i] [or: bacillus subtilis ] [de:hypothetical 31.5 kd protein in katb
							3'region] [sp:p42313] [db:swissprot]
10737782_f1_47	86	2689	183	60	74	0.041	[ln:celf38b6] [ac:u40060] [gn:f38b6.3] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid f38b6.]
							[le:25381:26844:27050:27814] [re:25476:26998:27138:27926] [di:directjoin]
10738758_f3_26	87	2690	198	65	50	0.72	[ln:cef49e11] [ac:z70308] [pn:f49e11.1] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid f49e11, complete sequence.] [nt:similarity to
							s.pombe serine/threonine protein] [le:3290:3550:4496:4868] [re:3338:3724:4811:5131)
							[di:di
10740875_c2_18	88	2691	375	124	215	9.60E−18	[ac:p25614] [gn:ycr13c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast] [de:very
							hypothetical 22.8 kd protein in pgk1 region] [sp:p25614] [db:swissprot]
10740937_f1_1	89	2692	330	109	69	0.028	[ac:p37188:p76412] [gn:gatb] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69)]
							[sp:p37188:p764121] [db:swissprot]
10740937_f2_2	90	2693	327	108	72	0.014	[ac:p37188:p76412] [gn:gatb] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69)]
							[sp:p37188:p76412] [db:swissprot]
10741542_c3_109	91	2694	252	83	63	0.3	[ac:f64569] [pn:hypothetical protein hp0398] [or: helicobacter pylori ] [db:pir]
10744551_f3_7	92	2695	231	76	182	3.00E−14	[ac:d69868] [pn:conserved hypothetical protein ykvm] [gn:ykvm] [or: bacillus subtilis ]
							[db:pir]
10745937_f3_29	93	2696	621	206	233	1.20E−19	[ac:p96707] [gn:ydgi] [or: bacillus subtilis ] [ec:1.-.-.-] [de:putative nad(p)h
							nitroreductase,] [sp:p96707] [db:swissprot]
10761062_c1_10	94	2697	1620	539	2010	5.90E−208	[ac:p13242] [gn:ctra] [or: bacillus subtilis ] [ec:6.3.4.2] [de:ctp synthase, (utp--ammonia
							ligase) (ctp synthetase)] [sp:p13242] [db:swissprot]
10804062_f2_6	95	2698	1107	368	766	3.90E−76	[ac:p77212] [gn:ykgc] [or: escherichia coli ] [de:intergenic region] [sp:p77212]
							[db:swissprot]
10817943_f2_4	96	2699	864	287	661	5.30E−65	[ac:f70016] [pn:purine permease homolog yunk) [gn:yunk] [or: bacillus subtilis ] [db:pir]
10937882_f2_36	97	2700	2334	777	2200	4.30E−228	[ac:p50849] [gn:pnpa:comr] [or: bacillus subtilis ] [ec:2.7.7.8] [de:phosphorylase)
							(pnpase)] [sp:p50849] [db:swissprot]
10939413_c3_87	98	2701	1074	357	396	6.30E−37	[ac:a64433] [pn:spore coat polysaccharide biosynthesis protein c homolog]
							[cl:erythromycin resistance protein] [or: methanococcus jannaschii ] [db:pir]
							[mp:rev1008090-1006930]
10941387_c3_86	99	2702	510	169	94	0.013	[ac:h64431] [pn:glycosyl transferase,] [or: methanococcus jannaschii ] [ec:2.4.-.-]
							[db:pir] [mp:for996513-997385)
10944035_f3_29	100	2703	399	132	246	5.00E−21	[ln:soorfs] [ac:z79691] [pn:orfb] [gn:yorfb] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae yorf[a,b,c,d,e], fts1, pbpx and regr genes.] [le:1914] [re:2372]
							[di:complement]
10956442_c2_90	101	2704	519	172	139	3.80E−09	[ln:llpflmg13] [ac:aj000325] [pn:putative membrane protein] [gn:orfa] [or: lactococcus
							lactis ] [db:genpept-bct] [de: lactococcus lactis pfl gene (strain mg1363).] [le:270]
							[re:1187] [di:direct]
10964383_c1_11	102	2705	819	272	89	0.36	[ac:p37963] [gn:spovid] [or: bacillus subtilis ] [de:stage vi sporulation protein d]
							[sp:p37963] [db:swissprot]
10969461_f3_2	103	2706	474	157	301	7.40E−27	[ac:b53293] [pn:flm3 region hypothetical protein 2] [or:synechococcus sp.] [db:pir]
10970338_c1_75	104	2707	294	97	76	0.031	[ln:d87074] [ac:d87074] [gn:kiaa0237] [or: homo sapiens ] [sr: homo sapiens male bone
							marrow myeloblast cell line:kg-1 cdna t] [db:genpept-pri2] [de:human mrna for
							kiaaO237 gene, complete cds.] [nt:similar to a e.elegans protein encoded in cosmid]
							[le:476] [
10970968_c1_22	105	2708	1284	427	155	4.40E−08	[ln:af017983] [ac:af017983] [pn:gamma-glutamylcysteine synthetase] [gn:gsh1]
							[or: lycopersicon esculentum ] [sr:tomato] [db:genpept-pln] [de: lycopersicon esculentum
							gamma-glutamylcysteine synthetase (gsh1)mrna, complete cds.] [le:239] [re:1810]
							[di:direct]
10975167_c1_24	106	2709	717	238	677	1.10E−66	[ac:p30294] [gn:livf:livg] [or: salmonella typhimurium ] [de:livf(liv-i protein f)]
							[sp:p30294] [db:swissprot]
10975292_f2_10	107	2710	750	249	299	1.20E−26	[ln:syngip3124] [ac:m77279] [pn:alpha-amylase] [or:unidentified cloning vector]
							[sr:cloning vector (sub_species cloning vector pgip3124) dna] [db:genpept-syn]
							[de:cloning vector pgip3124 with inserted enterococcus faecalisalpha -amylase fusion
							protein gene
10976587_c1_52	108	2711	375	124	87	0.00052	[ac:p37471] [gn:divic:diva] [or: bacillus subtilis ] [de:cell division protein divic]
							[sp:p37471] [db:swissprot]
10977307_f2_34	109	2712	510	169	116	1.60E−O5	[ac:p22560] [or: mus musculus ] [sr:,mouse] [de:ifn-response binding factor 1 (irebf-1)]
							[sp:p22560] [db:swissprot]
10979678_f2_12	110	2713	357	118	268	2.30E−23	[ac:f70009] [pn:conserved hypothetical protein yufq] [gn:yufq] [or: bacillus subtilis ]
							[db:pir]
10985215_f3_4	111	2714	1044	347	60	0.87	[ln:pbu42580] [ac:u42580:u17055:u32570] [gn:a4201] [or: paramecium bursaria
							chlorella virus 1] [db:genpept-vrl] [de: paramecium bursaria chlorella virus 1, complete
							genome.] [le:204610] [re:204822] [di:complement]
10991461_c3_85	112	2715	1131	376	853	2.40E−85	[ln:lpalrgene] [ac:y08941] [pn:alanine racemase] [gn:alr] [or: actobacillus plantarum ]
							[db:genpept-bct] [ec:5.1.1.1] [de: l.plantarum alr gene.] [le:226] [re:1353] [di:direct]
10992127_c1_37	113	2716	375	124	63		[ac:s75993] [pn:hypothetical protein] [or:synechocystis sp. ] [sr:pcc 6803,, pcc 6803]
							[sr:pcc 6803,] [db:pir]
10995340_f3_3	114	2717	243	80	171	5.60E−12	[ac:p22976] [gn:recp] [or: streptococcus pneumoniae ] [ec:2.2.1.1] [de:probable
							transketolase, (tk)] [sp:p22976] [db:swissprot]
11016376_f1_3	115	2718	996	331	586	4.70E−57	[ac:b70032] [pn:conserved hypothetical protein yvcl] [gn:yvcl] [or: bacillus subtilis ]
							[db:pir]
11016576_f2_8	116	2719	1620	539	139	1.10E−08	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumonia nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
11019406_f3_7	117	2720	243	80	65	0.076	[ac:p38190] [gn:yb1053w:yb10514] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:very hypothetical 13.2 kd protein in ptc3-sas3 intergenic region] [sp:p38190]
							[db:swissprot]
11021088_f1_12	118	2721	201	66	112	1.80E−08	[ac:c69992] [pn:abc transporter (atp-binding protein) homolog ytgb] [gn:ytgb]
							[or: bacillus subtilis ] [db:pir]
11040942_c1_70	119	2722	237	78	87	0.00035	[ln:ehy14328] [ac:y14328] [pn:3e1 protein] [or: entamoeba histolytica ] [db:genpept-inv]
							[de: entamoeba histolytica mrna for 3e1 protein.] [le:32] [re:418] [di:direct]
11053302_f2_3	120	2723	291	96	56	0.57	[ac:o05239] [gn:yugj] [or: bacillus subtilis ] [ec:1.1.1.-) [de:probable nadh-dependent
							butanol dehydrogenase 1,) [sp:o05239] [db:swissprot]
11054812_f3_15	121	2724	219	72	69	0.16	[ln:scual1g] [ac:z30326] [pn:ubiquitin activating enzyme el-like protein] [gn:ual1]
							[or: saccharomyces cerevisiae ] [sr:baker's yeast] [db:genpept-pln] [de: s.cerevisiae genes
							for ubiquitin activating enzyme-like protein andtransfer rna-gly.] [nt:homology wi
11062917_c3_99	122	2725	840	279	188	7.00E−15	[ac:q57425:p96338] [gn:hi1077.1] [or: haemophilus influenzae ] [de:hypothetical protein
							hi1077.1) [sp:q57425:p96338] [db:swissprot]
11063166_c1_21	123	2726	237	78	63	0.14	[ac:s53584] [pn:probable membrane protein yal065c] [or: saccharomyces cerevisiae ]
							[db:pir] [mp:11]
11068762_c3_108	124	2727	702	233	163	7.40E−20	[ac:p16313] [or:glycine max] [sr:,soybean] [de:nodulin 21 (n-21)] [sp:p16313]
							[db:swissprot]
11072187_c1_45	125	2728	240	79	60	0.12	[ln:ddmybs] [ac:aj002383] [pn:mybs protein] [gn:mybs] [or: dictyostelium discoideum ]
							[db:genpept-inv] [de: dictyostelium discoideum mybs gene.] [nt:myb-related gene]
							[le:316] [re:2415] [di:direct]
110952_f2_29	126	2729	303	100	199	4.50E−15	[ac:js0673] [pn:neopullulanase,) [cl:neopullulanase:alpha-amylase core homology]
							[or:bacillus sp.] [ec:3.2.1.135] [db:pir]
11111376_f3_15	127	2730	249	82	77	0.004	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
11111561_f3_51	128	2731	276	91	68	0.17	[ln:asu67851] [ac:u67851] [pn:chtk] [gn:chtk] [or:agrobacterium sp.] [db:genpept-bct]
							[de:agrobacterium sp. chrysopine transport region chtg (chtg) gene,partial cds, chth
							(chth), chti (chti), chtj (chtj), and chtk (chtk)genes, complete cds.] [nt:putative
11114442_f1_12	129	2732	927	308	113	2.90E−06	[ac:e69786] [pn:ribosomal-protein-alanine n-acetyltransfer homolog ydid] [gn:ydid]
							[or: bacillus subtilis ] [db:pir]
111254_c1_20	130	2733	686	228	117	6.20E−05	[ln:ae001175) [ac:ae001175:ae000783] [pn: b. burgdorferi predicted coding region
							bb0759] [gn:bb0759] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-
							bct] [de: borrelia burgdorferi (section 61 of 70) of the complete genome.] [nt:hypothetic
11133290_f1_4	131	2734	240	79	122	2.20E−07	[ac:p39593] [gn:thim:thik:ipa-25d] [or: bacillus subtilis ] [ec:2.7.1.50]
							[de:hydroxyethylthiazole kinase) (thz kinase) (th kinase)] [sp:p39593] [db:swissprot)
11175208_f2_2	132	2735	198	65	64	0.41	[ac:d69308] [pn:2-ketoglutarate ferredoxin oxidoreductase, subunit beta (korb)
							homolog] [or: archaeoglobus fulgidus ] [db:pir]
11177318_c2_73	133	2736	675	224	317	1.50E−28	[ac:p39147] [gn:comfc:comf3] [or: bacillus subtilis ] [de:comf operon protein 3]
							[sp:p39147] [db:swissprot]
11178760_f3_8	134	2737	1017	338	701	3.00E−69	[ac:e69981] [pn:nifs protein homolog homolog yrvo] [gn:yrvo] [or: bacillus subtilis ]
							[db:pir]
11180177_f3_24	135	2738	774	257	433	7.60E−41	[ac:c69049] [pn:abc transporter (atp-binding protein)] [gn:mth137O]
							[or: methanobacterium thermoautotrophicum ] [db:pir]
11208168_f3_10	136	2739	216	71	66	0.057	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
113430_c1_172	137	2740	309	102	67	0.5	[ac:c69368] [pn:conserved hypothetical protein af0947] [or: archaeoglobus fulgidus ]
							[db:pir]
11718926_c1_19	138	2741	1512	503	1144	3.50E−116	[ac:p39651] [gn:ywfo:ipa-93d] [or: bacillus subtilis ] [de:hypothetical 51.0 kd protein in
							pta 3'region] [sp:p39651] [db:swissprot]
11719786_f3_32	139	2742	510	169	224	8.50E−21	[ln:ehu42211] [ac:u42211] [pn:psr] [fn:involved in the regulation of penicillin]
							[or: enterococcus hirae ] [sr: enterococcus hirae strain=atcc 9790] [db:genpept-bct]
							[de: enterococcus hirae psr gene, complete cds.] [le:746] [re:1627] [di:direct]
11719818_c3_147	140	2743	984	327	58	0.96	[ac:d64596] [pn:hypothetical protein hp0612] [or: helicobacter pylori ] [db:pir]
11723500_c1_23	141	2744	216	71	71	0.017	[ac:s64781] [pn:hypothetical protein yll030c:hypothetical protein 10932]
							[or: saccharomyces cerevisiae ] [db:pir] [mp:121]
11726452_f1_2	142	2745	1308	435	425	4.70E−44	[ac:p76273:o07980] [gn:yebu] [or: escherichia coli ] [de:hypothetical 53.4 kd protein in
							prc-prpa intergenic region] [sp:p76273:o07980] [db:swissprot]
11728801_f2_24	143	2746	360	119	79	0.37	[ac:p51234] [or: porphyra purpurea ] [de:hypothetical 73.8 kd protein in ycf10-psbi
							intergenic region (orf621)] [sp:p51234] [db:swissprot]
1173333_c1_143	144	2747	183	60	63	0.57	[ac:q60276] [gn:mjecl14] [or: methanococcus jannaschii ] [de:hypothetical protein
							mjecl14] [sp:q60276] [db:swissprot]
11745462_f2_20	145	2748	768	255	904	9.30E−91	[ac:q58418] [gn:pstb:mj1012] [or: methanococcus jannaschii ] [de:probable phosphate
							transport atp-binding protein pstb] [sp:q58418] [db:swissprot]
11754625_f2_10	146	2749	207	68	71	0.045	[ln:atac002391] [ac:ac002391] [pn:putative proline-rich protein] [gn:t20d16.24]
							[or: arabidopsis thaliana ] [sr:thale cress] [db:genpept-pln] [de: arabidopsis thaliana
							chromosome ii bac t20d16 genomic sequence,complete sequence.] [le:106251:106553]
							[re:10633
11760212_c3_28	147	2750	888	295	344	2.10E−31	[ac:h69800] [pn:hypothetical protein yfhg] [gn:yfhg] [or: bacillus subtilis ] [db:pir]
11772183_c3_23	148	2751	186	61	67	0.3	[ac:e69674] [pn:pectate lyase pelb] [gn:pelb] [or: bacillus subtilis ] [db:pir]
11802281_c3_83	149	2752	1080	359	695	1.30E−68	[ac:p55975] [gn:tsf:hp1555] [or: helicobacter pylori ] [sr:, campylobacter pylori ]
							[de:elongation factor ts (ef-ts)] [sp:p55975] [db:swissprot]
1181593_c1_50	150	2753	189	62	75	0.0066	[ln:ecu19577] [ac:u19577] [pn:galactonate dehydratase] [gn:dgod] [or: escherichia coli ]
							[db:genpept-bct] [de: escherichia coli galactonate dehydratase (dgod) gene, partial cds.]
							[le:97] [re:
11830030_c1_6	151	2754	600	199	159	8.00E−11	[ln:celw03d2] [ac:af000298] [gn:w03d2.1] [or: caenorhabditis elegans ]
							[sr: caenorhabditis elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis
							elegans cosmid w03d2.] [nt:weak similarity to collagens; glycine- and]
11831303_c1_8	152	2755	252	83	62	0.3	[ac:p49944] [gn:bfr] [or: brucella melitensis ] [de:bacterioferritin (bfr)] [sp:p49944]
							[db:swissprot]
11831307_f2_10	153	2756	225	74	244	8.10E−21	[ac:p42060] [gn:rplv] [or: bacillus subtilis ] [de:50s ribosomal protein 122] [sp:p42060]
							[db:swissprot]
11834678_c1_82	154	2757	348	115	66	0.93	[ln:s55290] [ac:s55290] [pn:anti-tetanus antibody heavy chain variable] [gn:anti-tetanus
							antibody heavy chain variable region] [or: homo sapiens ] [sr:human hybridoma
							heteromyeloma gli-h7 cell line ttl17 b cells] [db:genpept-pri2] [de:anti-tetanus antibody
11850125_c2_29	155	2758	465	154	94	0.0042	[ac:p23614] [or:gallus gallus] [sr:,chicken] [de:23 kd cortical cytoskeleton-associated
							protein (cap-23)] [sp:p23614] [db:swissprot]
11852063_c1_52	156	2759	537	178	99	0.011	[ln:yscs22] [ac:m16165] [or: saccharomyces cerevisiae ] [sr:yeast ( s.cerevisiae , strain
							ah22) dna, clone pscm6] [db:genpept-pln] [de:yeast ( s.cerevisiae ) s1 protein gene,
							partial.] [nt:s1 protein] [le:<1] [re:
11875075_c1_51	157	2760	198	65	78	0.0085	[ac:p22819:p19207] [gn:bioy] [or: bacillus sphaericus ] [de:bioy protein precursor]
							[sp:p22819:p19207] [db:swissprot]
11875325_c1_22	158	2761	399	132	380	3.10E−35	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
11880437_c2_47	159	2762	258	85	182	3.00E−14	[ln:shu35635] [ac:u35635] [pn:unknown] [or: staphylococcus haemolyticus ]
							[sr: staphylococcus haemolyticus strain=y176] [db:genpept-bct] [de: staphylococcus
							haemolyticus is1272 orf1 and orf2 genes, completecds.] [nt:orf1] [le:1101] [re:1922]
							[di:complement]
11880437_c3_65	160	2763	531	176	213	7.80E−17	[ln:af015453] [ac:af015453] [pn:unknown] [or: lactobacillus rhamnosus ] [db:genpept-
							bct] [de: lactobacillus rhamnosus 6-phospho-beta-glucosidase homolog gene,partial cds;
							gntr transcriptional regulator homolog and surfacelocated protein genes, complete cds.]
118825_c3_65	161	2764	183	60	122	6.90E−08	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[dc: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
1189425_f3_35	162	2765	627	208	57	0.016	[ac:d49786] [pn:bacteriocin precursor a1] [or: lactococcus lactis subsp. cremoris]
11895808_c3_9	163	2766	396	131	168	5.80E−12	[ac:s51939:s72315:s45025] [pn:chitinase, precursor] [or: beta vulgaris ] [sr:, beet]
							[ec:3.2.1.14] [db:pir]
11909681_f3_27	164	2767	1107	368	808	1.40E−80	[ac:c70009] [pn:abc transporter (lipoprotein) homolog yufn] [gn:yufn] [or: bacillus
							subtilis] [db:pir]
11915936_f1_16	165	2768	1281	426	273	1.30E−21	[ac:f69762] [pn:transporter homolog yclil] [gn:ycli] [or: bacillus subtilis ] [db:pir]
11932801_c3_115	166	2769	1176	391	118	0.00097	[ac:p37609] [gn:lcndr2] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[de:lacticin 48 1lactococcin biosynthesis protein lcndr2] [sp:p37609] [db:swissprot]
11990962_f1_3	167	2770	447	148	228	8.30E−19	[ac:p12045] [gn:purk] [or: bacillus subtilis ] [ec:4.1.1.21] [de:(air carboxylase) (airc)]
							[sp:p12045] [db:swissprot]
11995803_f1_1	168	2771	300	99	327	9.70E−29	[ac:p18667] [gn:fus] [or: anacystis nidulans ] [de:elongation factor g (ef-g)] [sp:p18667]
							[db:swissprot]
12000436_f2_1	169	2772	225	74	102	9.00E−06	[ac:c69874] [pn:conserved hypothetical protein ylbh] [gn:ylbh] [or: bacillus subtilis ]
							[db:pir]
120252_c2_65	170	2773	549	182	229	9.00E−09	[ac:h69812] [pn:conserved hypothetical protein yfmi] [gn:yfmi] [or: bacillus subtilis ]
							[db:pir]
1204403_f3_27	171	2774	903	300	647	1.60E−63	[ac:p17894:p19671] [gn:recn] [or: bacillus subtilis ] [de:dna repair protein recn
							(recombination protein n)] [sp:p17894:p19671] [db:swissprot]
1205252_f3_36	172	2775	1995	664	477	1.70E−45	[ac:b70001] [pn:abc transporter (permease) homolog tsyd] [gn:ytsd] [or: bacillus
							subtilis ] [db:pir]
1206307_f1_7	173	2776	192	63	113	6.20E−07	[ln:soorfs] [ac:z79691] [pn:orfb] [gn:yorfb] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumonia yorf[a,b,c,d,e], fts1, pbpx and regr genes.] [le:1914] [re:2372]
							[di:complement]
1206927_f2_9	174	2777	213	70	66	0.057	[ln:hiu89633] [ac:u89633] [pn:major outer membrane protein p2-type 2]
							[or: haemophilus influenzae ] [db:genpept-bct] [de: haemophilus influenzae major outer
							membrane protein p2-type 2 gene, partial cds.] [nt:loops 4 to 6] [le:<1] [re:
1209455_c2_36	175	2778	348	115	567	4.80E−55	[ln:spparcetp] [ac:z67739] [pn:dna transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: s.pneumoniae parc, pare and transposase genes and unknown orf.]
							[nt:novel insertion sequence related to is861 of group] [le:<1] [re:435] [di:direct]
12111256_c1_22	176	2779	789	262	864	1.60E−86	[ln:spdexcap] [ac:z47210] [pn:unknown] [gn:orf1] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: s.pneumoniae dexb, cap3a, cap3b and cap3c genes and orfs.]
							[nt:the deduced amino acid sequence contains a sugar] [le:3649] [re:4341] [di:direct]
12112812_f2_17	177	2780	831	276	214	5.40E−17	[ac:p39365] [gn:sgcc] [or: escherichia coli ] [de:putative phosphototransferase enyzme ii, c
							component sgcc] [sp:p39365] [db:swissprot]
12135007_f1_6	178	2781	198	65	52	0.077	[ac:s17298:s37706] [pn:alpha-amylase,:cyclomaltodextrin glucanotransferase homolog]
							[gn:amya] [cl:cyclomaltodextrin glucanotransferase:alpha-amylase core homology]
							[or: thermoanaerobacterium thermosulfurigenes ] [ec:3.2.1.1] [db:pir]
1214017_f2_13	179	2782	636	211	441	1.10E−41	[ac:p39594] [gn:thie:thic:ipa-26d] [or: bacillus-subtilis] [ec:2.5.1.3]
							[de:pyrophosphorylase) (tmp-ppase) (thiamin-phosphate synthase)] [sp:p39594]
							[db:swissprot]
1214592_c2_189	180	2783	1332	443	473	4.40E−45	[ac:p54308] [gn:2] [or:bacteriophage sp1] [de:terminase large subunit (g2p)]
							[sp:p54308] [db:swissprot]
12148337_c2_49	181	2784	393	130	148	9.90E−10	[ac:p06990] [gn:hsds:hss] [or: escherichia coli ] [de:type i restriction enzyme ecobi
							specificity protein (s protein)] [sp:p06990] [db:swissprot]
12149092_c2_66	182	2785	1566	521	1281	1.00E−130	[ac:p35854] [gn:dlta:dae] [or: lactobacillus casei ] [ec:6.3.2.-] [de:carrier protein ligase)
							(dcl)] [sp:p35854] [db:swissprot]
1220036_f3_25	183	2786	3093	1030	95	0.18	[ln:bstyrs1g] [ac:x52480:s93287] [gn:orf2] [or: bacillus subtilis ] db:genpept-bct]
							[de: bacillus subtilis tyrs1 gene for tyrosine trna synthetase, sacx, andsacy genes, and
							three orfs.] [sp:p25148] [le:1286] [re:2128] [di:complement]
12207031_c3_39	184	2787	282	93	228	4.00E−19	[ac:p21260:p21261] [or: owenia fusiformis ] [de:hypothetical proline-rich protein
							(fragment)] [sp:p21260:p21261] [db:swissprot]
12207034_c1_23	185	2788	209	69	236	5.70E−20	[ac:p21260:p21261] [or: owenia fusiformis ] [de:hypothetical proline-rich protein
							(fragment)] [sp:p21260:p21261] [db:swissprot]
12269127_f1_2	186	2789	624	207	96	9.00E−05	[ln:d78257] [ac:d78257] [pn:orf8] [gn:orf8] [or: enterococcus faecalis ] [sr: enterococcus
							faecalis plasmid:pyi17 dna] [db:genpept-bct] [de: enterococcus faecalis plasmid pyi17
							genes for baca, bacb, orf3,orf4, orf5, orf6, orf7, orf8, orf9, orf10, orf11,partia
12273277_c1_13	187	2790	1110	369	1582	1.30E−162	[ac:a42963:b42963:jh0750] [pn:glyceraldehyde-3-phosphate dehydrogenase,:plasmin
							receptor] [c1:glyceraldehyde-3-phosphate dehydrogenase] [or:streptococcus sp.]
							[ec:1.2.1.12] [db:pir]
12285407_c3_14	188	2791	963	320	703	1.90E−69	[ln:af010151] [ac:af010151] [pn:psco] [gn:psco] [or: pseudomonas aeruginosa ]
							[db:genpept-bct] [de: pseudomonas aeruginosa pscn (pscn) gene, complete cds, and
							psco(psco) gene, partial cds.] [le:1413] [re:
12296883_c1_69	189	2792	204	67	52	0.27	[ac:i49019] [pn:retinoid x receptor interacting protein no.3] [gn:rip14-2(3)] [or: mus
							musculus ] [sr:, house mouse] [db:pir]
12301556_f1_1	190	2793	459	152	102	4.20E−05	[ac:p37187:p76413] [gn:gata] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69)]
							[sp:p37187:p76413] [db:swissprot]
12303882_f3_8	191	2794	747	248	326	1.70E−29	[ln:mtv003] [ac:a1008883] [pn:hypothetical protein mtvOO3.05c] [gn:mtvOO3.05c]
							[or: mycobacterium tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis
							sequence v003.] [nt:mtv003.05c, unknown, len: 308 aa; similar to e.] [le:3006]
							[re:3932] [di:com
12384653_c2_63	192	2795	996	331	1716	8.40E−177	[ln:af030367] [ac:af030367] [pn:maturase-related protein] [or: streptococcus
							pneumoniae] [db:genpept-bct] [de: streptococcus pneumoniae strain nctc11906 alpha, 1-
							6-glucosidase(dexb) gene, partial cds; maturase-related protein, putativeregulatory
							protein (cp
12503215_f2_6	193	2796	666	221	595	5.20E−58	[ln:cju93169] [ac:u93169] [pn:outer membrane protein] [gn:omph1] [or: campylobacter
							jejuni ] [db:genpept-bct] [de: campylobacter jejuni outer membrane protein (omph1)
							gene, completecds.] [nt:glutamine binding protein analog] [le:164] [re:1003] [di:direct]
12511087_c1_32	194	2797	1179	392	137	3.50E−06	[ac:q58626] [gn:accc:mj1229] [or:rnethanococcusjannaschii] [ec:6.3.4.14:6.4.1.2]
							[de:carboxylase,) (acc)] [sp:q58626] [db:swissprot]
12525781_f2_20	195	2798	795	264	275	4.20E−24	[ac:s22456:s18964] [pn:hydroxyproline-rich glycoprotein] [or: zea diploperennis ] [sr:,
							perennial teosinte] [db:pir]
1253405_c1_25	196	2799	351	116	73	0.34	[ln:ae001168] [ac:ae001168:ae000783] [pn:conserved hypothetical protein]
							[gn:bb0673] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 54 of 70) of the complete genome.] [nt:similar to
12537525_f1_49	197	2800	228	75	71	0.086	[ln:af042001] [ac:af042001] [pn:zinc finger protein slug] [gn:slug] [or: homo sapiens ]
							[sr:human] [db:genpept-pri2] [de: homo sapiens zinc finger protein slug (slug) gene,
							complete cds.] [nt:similar to mouse slug protein encoded by genbank] [le:447:1271 :272
12537525_f2_17	198	2801	432	143	77	0.93	[ac:q24739] [gn:bw] [or: drosophila virilis ] [sr:,fruit fly] [de:brown protein] [sp:q24739]
							[db:swissprot]
12538312_c2_91	199	2802	222	73	58	0.34	[ac:p34494] [gn:k02d10.3] [or: caenorhabditis elegans ] [de:hypothetical 11.0 kd protein
							k02d10.3 in chromosome iii] [sp:p34494] [db:swissprot]
12539086_f2_20	200	2803	384	127	122	6.90E−08	[ac:a69828] [pn:hypothetical protein yhea] [gn:yhea] [or: bacillus subtilis ] [db:pir]
12541307_f1_9	201	2804	1839	612	1841	4.80E−190	[ac:q45493] [gn:ykqc] [or: bacillus subtilis ] [de:hypothetical 61.5 kd protein in adec-
							pdha intergenic region] [sp:q45493] [db:swissprot]
12547167_f3_60	202	2805	246	81	66	0.06	[ac:p12354] [gn:psae-1,psae-2] [or: spinacia oleracea ] [sr:,spinach] [de:photosystem i
							reaction centre subunit iv precursor (psi-e)] [sp:p12354] [db:swissprot]
1254818_c3_78	203	2806	744	247	357	8.60E−33	[ac:p94424] [gn:ycnd] [or: bacillus subtilis ] [de:hypothetical 27.9 kd protein in phrc-gdh
							intergenic region] [sp:p94424] [db:swissprot]
12553792_c3_21	204	2807	477	158	186	1.10E−14	[ac:b69832] [pn:biotin biosynthesis homolog yhfu] [gn:yhfu] [or: bacillus subtilis]
							[db:pir]
12595013_f1_1	205	2808	468	155	333	3.00E−30	[ln:ae001166] [ac:ae001166:ae000783] [pn:conserved hypothetical protein]
							[gn:bb0644] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 52 of 70) of the complete genome.] [nt:similar to
125952_f2_6	206	2809	906	301	656	1.80E−64	[ac:e60759] [pn:hypothetical protein ycgr] [gn:ycgr] [or: bacillus subtilis ] [db:pir]
1260000_c1_19	207	2810	357	118	92	0.00057	[ln:spbc3d5] [ac:z95620] [pn:unknown] [gn:spbc3d5.14c] [or: schizosaccharomyces
							pombe ] [sr:fission yeast] [db:genpept-pln] [de: s.pombe chromosome ii cosmid c3d5.]
							[nt.spbc3d5.14c, unknown; partial; serine rich,] [le:31398] [re:
12616575_c1_34	208	2811	1572	523	2111	1.20E−218	[ac:p37949] [gn:lepa] [or: bacillus subtilis ] [de:gtp-binding protein lepa] [sp:p37949]
							[db:swissprot]
12751305_f1_15	209	2812	192	63	114	2.90E−06	[ac:p39300] [gn:yjfr] [or: escherichia coli ] [de:hypothetical 40.3 kd protein in aidb-rpsf
							intergenic region (f356)] [sp:39300] [db:swissprot]
12761688_c3_14	210	2813	519	172	308	1.30E−27	[ac:e69840] [pn:hypothetical protein yitl] [gn:yitl] [or: bacillus subtilis ] [db:pir]
12772818_c1_43	211	2814	519	172	252	1.20E−21	[ac:s76312] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803,, pcc 6803]
							[sr:pcc 6803,] [db:pir]
12789812_f3_8	212	2815	396	131	279	1.60E−24	[ac:b64666] [pn:glutamine abc transporter, permease protein] [or: helicobacter pylori ]
							[db:pir]
12791466_c2_66	213	2816	222	73	92	0.0017	[ac:h69828] [pn:abc transporter (atp-binding protein) homolog yheh] [gn:yheh]
							[or: bacillus subtilis ] [db:pir]
128431_c2_70	214	2817	288	95	69	0.028	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumonaie ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
12891427_c2_33	215	2818	198	65	71	0.017	[ln:spnana] [ac:x72967] [or: streptococcus pneumononiae] [db:gebpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
12898587_f1_3	216	2819	2166	721	2482	5.70E−258	[ac:q03727] [gn:coma] [or: streptococcus pneumoniae ] [de:transport atp-binding protein
							coma] [sp:q03727] [db:swissprot]
12931888_c3_92	217	2820	747	248	133	9.90E−07	[ac:p10020] [gn:tnpi] [or: bacillus thuringiensis ] [de:tnp i resolvase] [sp:p10020]
							[db:swissprot]
12969208_f3_7	218	2821	666	221	829	8.30E−83	[ac:p10539] [gn:asd] [or: streptococcus mutans ] [ec:1.2.1.11] [de:dehydrogenase)]
							[sp:p10539] [db:swissprot]
12971883_f1_3	219	2822	207	68	52	0.072	[ln:celf53g12] [ac:af003139] [gn:f53g12.6] [or: caenorhabditis elegans ]
							[sr: caenorhabditis elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis
							elegans cosmid f53g12.] [nt:similar to protein-tyrosine kinase; coded for by c.]
13025450_c3_52	220	2823	936	311	449	1.50E−42	[ac:d70008] [pn:nicotinate phosphoribosyltransferase homolog yuek] [gn:yuek]
							[or: bacillus subtilis ] [db:pir]
13066430_c1_16	221	2824	432	143	66	0.58	[ac:jh0205] [pn:hypothetical 11.8k protein] [or: enterococcus faecalis ] [db:pir]
13074056_f2_30	222	2825	594	197	480	8.00E−46	[ac:a69881] [pn:conserved hypothetical protein ylua] [gn:ylua] [or:bacillus subtilis]
							[db:pir]
13080005_f2_23	223	2826	507	168	435	4.70E−41	[ac:g70022] [pn:iron(iii) dicitrate transport permease homolog yusv] [gn:yusv]
							[or: bacillus subtilis ] [db:pir]
13080277_c1_20	224	2827	348	115	66	0.94	[ln:af037955] [ac:af037955] [pn:3-phosphoserine aminotransferase] [gn:serc]
							[or: neisseria meningitidis ] [db:genpept-bct] [de: neisseria meningitidis 3-phosphoserine
							aminotransferase (serc)gene, serc-3 allele, partial cds.] [le:<1] [re:
1308442_c3_26	225	2828	246	81	61	0.6	[ac:s23314] [pn:hypothetical protein 2] [cl:retrovirus-related polyprotein]
							[or: arabidopsis thaliana ] [sr:, mouse-ear cress] [db:pir]
13104161_f3_43	226	2829	690	229	263	1.90E−22	[ac:s51939:s72315:s45025] [pn:chitinase, precursor] [or:beta vulgaris] [sr:, beet]
							[ec:3.2.1.14] [db:pir]
1311_c3_50	227	2830	1218	405	1399	3.30E−143	[ac:p50307] [or: staphylococcus aureus ] [ec:2.5.1.6] [de:adenosyltransferase) (adomet
							synthetase)] [sp:p50307] [db:swissprot]
13131930_c2_10	228	2831	762	253	544	1.30E−52	[ac:g69663] [pn:nicotinate-nucleotide pyrophosphorylase nadc] [gn:nadc] [or: bacillus
							subtilis] [db:pir]
131388_c1_11	229	2832	207	68	109	1.60E−06	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
13159576_f2_17	230	2833	384	127	140	1.50E−09	[ac:p46719:p76294] [gn:cutc] [or: escherichia coli ] [de:copper homeostasis protein cutc]
							[sp:p46719:p76294] [db:swissprot]
13176885_c2_31	231	2834	951	316	981	6.50E−99	[ac:h69681] [pn:peptide chain release factor 2 prfb] [gn:prfb] [or:bacillus subtilis]
							[db:pir]
1359388_f2_11	232	2835	2073	690	3396	0	[ac:p10524] [gn:pena] [or: streptococcus pneumoniae ] [de:penicillin-binding protein 2b]
							[sp:p10524] [db:swissprot]
1360910_f1_7	233	2836	207	68	69	0.067	[ac:p03924] [gn:mtnd6:nd6] [or:bos taurus] [sr:,bovine] [ec:1.6.5.3] [de:nadh-
							ubiquinone oxidoreductase chain 6,] [sp:p03924] [db:swissprot]
1362653_c2_99	234	2837	243	80	71	0.017	[ac:a25020] [pn:t-cell receptor alpha chain v-j region (bdf1 alpha-1)]
							[cl:immunoglobulin v region:immunoglobulin homology] [or: mus musculus ] [sr:, house
13675311_c3_74	235	2838	300	99	302	5.80E−27	[ac:s67936] [pn:glycerol-3-phosphate dehydrogenase homolog glpd] [gn:glpd]
							[or: streptococcus pneumoniae ] [sr:strain p13,, strain p13] [sr:strain p13,] [db:pir]
13676575_f2_13	236	2839	1725	574	2224	1.20E−230	[ac:p23531] [gn:lace] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[cc:2.7.1.69] [de:(ec 2.7.1.69) (eii-lac)] [sp:p23531] [db:swissprot]
13678452_f1_10	237	2840	222	73	75	0.059	[ac:p55340] [gn:ecsb:prst] [or: bacillus subtilis ] [de:protein ecsb] [sp:p55340]
							[db:swissprot]
13681955_c2_39	238	2841	573	190	219	3.00E−17	[ac:s66651:s58356] [pn:pept protein] [gn:pept] [cl:unassigned atp-binding cassette
							proteins:malk protein homology] [or: staphylococcus epidermidis] [db:pir]
13683437_c1_35	239	2842	792	263	115	0.00023	[ac:e69463] [pn:type i restriction-modification enzyme, s subunit homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
13688377_c2_44	240	2843	471	156	306	9.30E−29	[ac:a41971:a60282:a33134] [pn:surface protein pspa precursor:pneumococcal surface
							protein a] [gn:pspa] [cl:cpl repeat homology] [or: streptococcus pneumoniae ] [db:pir]
1369002_c1_22	241	2844	543	180	196	2.30E−15	[ac:g70036] [pn:spore coat polysaccharide biosynthesis homolog yver] [gn:yver]
							[or: bacillus subtilis ] [db:pir]
13697812_f2_5	242	2845	1956	651	1400	2.60E−143	[ac:p39118] [gn:glgb] [or: bacillus subtilis ] [ec:2.4.1.18] [de:enzyme)] [sp:p39118]
							[db:swissprot]
13703817_f3_136	243	2846	183	60	49	0.38	[ac:p46975] [gn:t12a2.2] [or: caenorhabditis elegans ] [de:oligosaccharyl transferase stt3
							subunit homolog] [sp:p46975] [db:swissprot]
13709394_c2_45	244	2847	1385	461	1151	6.30E−117	[ac:p22250] [gn:gltx] [or: bacillus subtilis ] [ec:6.1.1.17] [de:(glurs)] [sp:p22250]
							[db:swissprot]
13709688_c3_46	245	2848	438	145	58	0.57	[ln:ae000785] [ac:ae000785] [pn: b. burgdorferi predicted coding region bbeO3]
							[gn:bbe03] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi plasmid lp25, complete plasmid sequence.] [nt:hypothetical
							protein; i
13714063_f1_1	246	2849	1707	568	99	0.0022	[ln:cec33a12] [ac:z68493] [pn:c33a12.13] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid c33a12, complete sequence.]
							[le:3295:3806:4032:4399] [re:3747:3964:4241:4593] [di:directjoin]
13750192_c1_38	247	2850	237	78	58	0.34	[ac:p45967] [gn:t09a5.7] [or: caenorhabditis elegans ] [de:hypothetical 12.5 kd protein
							t09a5.7 in chromosome iii] [sp:p45967] [db:swissprot]
1375091_f3_14	248	2851	243	80	60	0.52	[ac:q29408] [gn:i110] [or:ovis aries] [sr:,sheep] [de:factor) (csif)] [sp:q29408]
							[db:swissprot]
1375191_c3_8	249	2852	243	80	67	0.4	[ac:s29851:s27760] [pn:protein kinase 6,] [cl:unassigned ser/thr or tyr-specific protein
							kinases:protein kinase homology] [or:glycine max] [sr:, soybean] [ec:2.7.1.-] [db:pir]
1375216_f1_5	250	2853	243	80	66	0.48	[ac:s29851:s27760] [pn:protein kinase 6,] [cl:unassigned ser/thr or tyr-specific protein
							kinases:protein kinase homology] [or:glycine max] [sr:, soybean] [ec:2.7.1.-] [db:pir]
1375216_f3_12	251	2854	252	83	66	0.48	[ac:s29851:s27760] [pn:protein kinase 6,] [cl:unassigned ser/thr or tyr-specific protein
							kinases:protein kinase homology] [or:glycine max] [sr:, soybean] [ec:2.7.1.-] [db:pir]
1375216_f3_28	252	2855	243	80	63	0.75	[ac:s29851:s27760] [pn:protein kinase 6,] [cl:unassigned ser/thr or tyr-specific protein
							kinases:protein kinase homology] [or:glycine max] [sr:, soybean] [ec:2.7.1.-] [db:pir]
13752253_f1_20	253	2856	318	105	85	0.0058	[ln:spac23a1] [ac:al021813] [pn:hypothetical protein] [gn:spac23a1.01c]
							[or: schizosaccharomyces pombe ] [sr:fission yeast] [db:genpept] [de: s.pombe
							chromosome i cosmidc23a1.] [nt:spac23a1.01c, partial; unknown; serine/threonine]
							[le:1] [re:1370] [di:compl
13754035_c1_45	254	2857	228	75	62	0.15	[ac:b39777] [pn:hypothetical protein (blood stage antigen 41-3 3'region)]
							[or: plasmodium falciparum ] [db:pir]
13754035_c3_103	255	2858	261	86	66	0.18	[ln:celb0507] [ac:u64833] [gn:b0507.4] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid b0507.]
							[le:9388:9614:9908] [re:9540:9793:10177] [di:directjoin]
13757160_c3_8	256	2859	192	63	65	0.47	[ac:q33568] [gn:cyb] [or: trypanoplasma borreli ] [ec:1.10.2.2] [de:cytochrome b,]
							[sp:q33568] [db:swissprot]
1375931_c1_46	257	2860	2586	861	233	4.40E−15	[ac:69801] [pn:hypothetical protein yfho] [gn:yfho] [or: bacillus subtilis ] [db:pir]
13765967_c3_122	258	2861	192	63	69	0.028	[ac:p07133] [gn:rp120] [or: euglena gracilis ] [de:chloroplast 50s ribosomal protein 120]
							[sp:p07133] [db:swissprot]
1378452_c3_8	259	2862	936	311	981	6.50E−99	[ac:p20429] [gn:rpoa] [or: bacillus subtilis ] [ec:2.7.7.6] [de:alpha chain) (rna polymerase
							alpha subunit)] [sp:p20429] [db:swissprot]
13789140_c2_64	260	2863	1323	440	612	8.2E−60	[ac:g69885] [pn:processing proteinase homolog ymfh] [gn:yrnfh] [or: bacillus subtilis ]
							[db:pir]
13792062_c2_200	261	2864	942	313	1674	2.40E−172	[ac:p32762] [gn:hbl] [or: streptococcus pneumoniae phage hb-3] [ec:3.5.1.28] [de:lytic
							amidase, (n-acetylmuramoyl-1-alanine amidase)] [sp:p32762] [db:swissprot]
13792137_c2_68	262	2865	1254	417	2059	3.80E−213	[ln:spdacao] [ac:x99400] [pn:d,d-carboxypeptidase] [gn:daca] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: s.pneumoniae daca gene and orf.] [le:1921] [re:3162]
							[di:direct]
13829551_f2_21	263	2866	405	134	392	1.70E−36	[ac:p55339] [gn:ecsa:prst] [or: bacillus subtilis ] [de:abc-type transporter atp-binding
							protein ecsa] [sp:p55339] [db:swissprot]
13832812_c1_44	264	2867	339	112	86	0.0018	[ln:mhu56828] [ac:u56828] [pn:vaa surface lipoprotein adhesin] [gn:vaa]
							[or: mycoplasma hominis] [sr: mycoplasma hominis strain=pg21] [db:genpept-bct]
							[de: mycoplasma hominis vaa surface lipoprotein adhesin (vaa) gene,partial cds.] [le:<1]
							[re:759] [di:direc
13834555_c2_72	265	2868	330	109	186	1.10E−14	[ln:axu22323] [ac:u22323] [pn:unknown] [or: acetobacter xylinum ] [db:genpept-bct]
							[de: acetobacter xylinum insertion sequence element is1238 orfa gene,complete cds, and
							orfb gene, partial cds.] [nt:orfb] [le:<585] [re:1154] [di:direct]
1383501_f1_6	266	2869	348	115	73	0.8	[ln:cet09e8] [ac:z78065] [pn:t09e8.4] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid t09e8, complete sequence.] [le:12185:12596:12818]
							[re:12541:12770:12947] [di:complementjoin]
13835750_f3_8	267	2870	282	93	78	0.0027	[ln:cpvp1hom] [ac:aj000552] [pn:vp1 protein homologue] [gn:vp1] [fn:seed-specific
							transcriptional activator] [or: craterostigma plantagineum ] [db:genpept-pln]
							[de: craterostigma plantagineum mrna for vp1 protein homologue.] [le:1] [re:2067]
							[di:direct]
13836558_f1_3	268	2871	822	273	272	4.30E−23	[ln:lhprlsabc] [ac:z30709] [pn:abc transporter] [or: lactobacillus helveticus ] [db:genpept-
							bct] [de: l.helveticus genes for prolinase and putative abc transporter.] [nt:putative]
							[le:132] [re:1736] [di:complement]
13839057_f1_1	269	2872	1506	501	464	3.90E−44	[ac:p32683] [gn:yjbb] [or: escherichia coli ] [de:hypothetical 59.5 kd protein in meth-
							pepe intergenic region] [sp:p32683] [db:swissprot]
13843775_f1_9	270	2873	201	66	59	0.88	[ln:rcsrnap] [ac:d31879] [pn:rna polymerase] [or:rice stripe virus] [sr:rice stripe virus
							(isolate:t) cdna to genomic rna] [db:genpept-vrl] [de:rice stripe virus gene for rna
							polymerase, complete cds.] [le:58] [re:8817] [di:direct]
1384652_c3_77	271	2874	1254	417	288	1.80E−25	[ac:f69885] [pn:processing proteinase homolog ymfg] [gn:ymfg] [or: bacillus subtilis ]
							[db:pir]
1385061_f2_11	272	2875	336	111	320	7.20E−29	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
13851375_c1_21	273	2876	192	63	58	0.35	[ac:g64622] [pn:conserved hypothetical protein hp0823] [or: helicobacter pylori ]
13855011_f2_4	274	2877	561	186	181	3.80E−14	[ac:q06242] [gn:vanz] [or: enterococcus faecium ] [ sr:,streptococcus faecium ] [de:vanz
							protein] [sp:q06242] [db:swissprot]
1385925_c3_114	275	2878	624	207	517	9.50E−50	[ln:11u23376] [ac:u23376] [or: lactococcus lactis ] [db:genpept-bct] [de: lactococcus lactis
							n5-(1-carboxyethyl)-1-ornithine synthase (ceo)gene, complete cds.] [nt:putative 20-kda
							protein] [le:374] [re:925] [di:direct]
1385927_f1_6	276	2879	237	78	81	0.0065	[ac:q60367] [gn:mj0060] [or: methanococcus jannaschii ] [de:hypothetical protein
							mjOO6O] [sp:q60367] [db:swissprot]
13860885_f2_26	277	2880	753	250	141	9.90E−08	[ln:af005098] [ac:af005098] [pn:positive regulator gadr] [gn:gadr] [fn:activates chloride
							dependent transcription of] [or: lactococcus lactis ] [db:genpept-bct] [de: lactococcus
							lactis rnasch ii (rnhb) gene, partial cds, positiveregulator gadr (gadr), gadc (
13860956_f2_5	278	2881	255	84	65	0.7	[ac:jc5721] [pn:vacuolar protein sorting protein 33b] [or:rattus norvegicus] [sr:, norway
							rat] [db:pir]
13866285_f1_11	279	2882	438	145	210	3.60E−17	[ac:d69999] [pn:conserved hypothetical protein ytqa] [gn:ytqa] [or: bacillus subtilis ]
							[db:pir]
13866385_c3_114	280	2883	354	117	97	0.00076	[ac:q09457] [gn:c09g5.6] [or: caenorhabditis elegans ] [de:putative cuticle collagen
							c09g5.6] [sp:q09457] [db:swissprot]
13867332_c2_22	281	2884	279	92	67	0.59	[ln:sau73374] [ac:u73374] [pn:cap8k] [gn:cap8k] [or: staphylococcus aureus ]
							[db:genpept-bct] [de: staphylococcus aureus type 8 capsule genes, cap8a, cap8b,
							cap8c,cap8d, cap8e, cap8f, cap8g, cap8h, cap8i, cap8j, cap8k, cap8l,cap8m, cap8n,
13869003_f2_29	282	2885	576	191	195	4.20E−15	[ln:bju33883] [ac:u33883] [gn:orf3] [or: bradyrhizobium japonicum ]
							[sr: bradyrhizobium japonicum strain=usda 110] [db:genpept-bct] [de: bradyrhizobium
							japonicum signal peptidase sips (sips) gene,complete cds.] [le:1617] [re:2747]
13869007_f2_11	283	2886	267	88	118	6.00E−07	[ac:p36999] [gn:yebh] [or: escherichia coli ] [de:hypothetical 30.4 kd protein in manz-
							cspc intergenic region (or30)] [sp:p36999] [db:swissprot]
13877267_f1_14	284	2887	1242	413	607	2.80E−59	[ac:q47866] [gn:ftsw] [or: enterococcus hirae ] [de:probable cell division protein ftsw]
							[sp:q47866] [db:swissprot]
13881575_c1_72	285	2888	1512	503	119	0.00026	[ac:b544971 [pn:surface membrane protein p26 precursor] [or: babesia rodhaini ] [db:pir]
13883507_c3_84	286	2889	222	73	71	0.064	[ac:s16652] [pn:hypothetical protein 223] [or: escherichia coli ] [db:pir]
13884438_f2_5	287	2890	258	85	125	1.20E−07	[ln:tu2cirprsr] [ac:126219] [pn:repressor protein] [gn:ci] [or:bacteriophage tuc2OO9]
							[sr:bacteriophage tuc2009 dna] [db:genpept-phg] [de: bacteriophage tuc2OO9 repressor
							protein (ci) gene, complete cds.] [le:1] [re:861] [di:direct]
13884711_f1_1	288	2891	243	80	144	3.20E−10	[ac:c69880] [pn:conserved hypothetical protein ylqc] [gn:ylqc] [or: bacillus subtilis ]
							[db:pir]
13953467_f1_2	289	2892	441	146	387	5.70E−36	[ac:d70065] [pn:hydroxymyristoyl-(acyl carrier protein) de homolog ywpb] [gn:ywpb]
							[or: bacillus subtilis ] [db:pir]
13961062_c3_85	290	2893	564	187	458	1.70E−43	[ac:p28368] [gn:yvyd] [or: bacillus subtilis ] [de:hypothetical 22.0 kd protein in flit-seca
							intergenic region] [sp:p28368] [db:swissprot]
14068965_f1_1	291	2894	837	278	457	2.20E−43	[ac:e69864] [pn:myo-inositol-1(or 4)-monophosphatase homolog yktc] [gn:yktc]
							[or: bacillus subtilis ] [db:pir]
14074087_c2_113	292	2895	966	321	854	1.90E−85	[ln:shu75349] [ac:u75349] [pn:putative abc transporter shic] [or: serpulina
							hyodysenteriae ] [db:genpept-bct] [de: serpulina hyodysenteriae shi opcron, periplasmic
							iron-bindingproteins shia and shib, putativc abc transporter shic, and putativepermeases
							shid
1409437_c2_26	293	2896	315	104	64	0.092	[ac:pc4273] [pn:lytb protein] [gn:lytb] [or: campylobacter jejuni ] [db:pir]
14095953_c2_185	294	2897	1194	397	82	0.57	[ac:p56005] [gn:ffh:hp1152] [or: helicobacter pylori ] [sr:, campylobacter pylori ]
							[de:signal recognition particle.protein (fifty-four homolog)] [sp:p56005] [db:swissprot]
1411416_f1_1	295	2898	1095	364	538	5.70E−52	[ac:p14940] [gn:adh] [or: alcaligenes eutrophus ] [ec:1.1.1.1] [de:alcohol
							dehydrogenase,] [sp:p14940] [db:swissprot]
1412583_c1_9	296	2899	252	83	79	0.015	[ln:cec47a10] [ac:z81484] [pn:c47a10.2] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid c47a10, complete sequence.] [le:9360:9843:10577]
							[re:9669:10261:10792] [di:directjoin]
14141468_f3_11	297	2900	801	266	443	6.60E−42	[ac:p18579:p16669:p37581] [gn:murb] [or: bacillus subtilis ] [ec:1.1.1.158]
							[de:acetylmuramate dehydrogenase)] [sp:p18579:p16669:p37581] [db:swissprot]
14142167_c1_84	298	2901	210	69	55	0.08	[ln:cpu07244] [ac:u07244] [pn:nadh dehydrogenase subunit 2] [or:mitochondrion
							chalinochromis popeleni ] [sr: chalinochromis popeleni ] [db:genpept-vrt]
							[de: chalinochromis popeleni t4a mitochondrion nadh dehydrogenasesubunit 2 gene,
							completecds.] [le:1] [re:
14142175_f3_32	299	2902	219	72	68	0.071	[ln:bbu45424] [ac:u45424] [gn:rep-] [or: borrelia burgdorferi ] [sr:lyme disease
							spirochete strain=297] [db:genpept-bct] [de: borrelia burgdorferi 2.9-4 locus, orf-c gene,
							partial cds, orf-d,rep+, rep−, and lipoprotein (lp) genes, completc cds.] [nt:minus st
14145687_c3_39	300	2903	1377	458	1695	1.40E−174	[ln:ab000830] [ac:ab000830] [pn:alpha-amylase precursor] [or: streptococcus bovis]
							[sr: streptococcus bovis (strain:148) dna] [db:genpept-bct] [de: streptococcus bovis gene
							for alpha-amylase, partial cds.] [nt:intracellular alpha-amylase precursor] [le:<669]
14172841_f1_1	301	2904	1536	511	898	4.00E−90	[ac:p13522] [gn:scrb] [or: streptococcus mutans ] [ec:3.2.1.26] [de:sucrose-6-phosphate
							hydrolase, (sucrase) (invertase)] [sp:p13522] [db:swissprot]
14220052_c3_63	302	2905	1650	549	1913	1.10E−197	[ac:e69861] [pn:abc transporter (atp-binding protein) homolog ykpa] [gn:ykpa]
							[or: bacillus subtilis ] [db:pir]
14223451_f3_31	303	2906	270	89	121	8.80E−08	[ac:b30868] [pn:hypothetical protein 1 (insertion sequence is861)] [gn:is861-orf1]
							[or: streptococcus agalactiae ] [db:pir]
14226375_c3_23	304	2907	219	72	57	0.2	[ac:f69774] [pn:transposon protein homolog ydcq] [gn:ydcq] [or: bacillus subtilis ]
							[db:pir]
14226377_c2_71	305	2908	384	127	58	0.46	[ln:lmu58160] [ac:u58160] [gn:mhc class i] [or: lepidodactylus moestus ] [db:genpept-
							vrt] [de: lepidodactylus moestus mhc class i mrna, peptide binding regionalpha-2
							domain, partial cds.] [nt:encodes peptide binding region alpha-2 domain] [le:<1] [re:
14230313_c1_26	306	2909	885	294	1364	1.70E−139	[ln:spu09239] [ac:u09239] [pn:glucose-1-phosphate thymidyl transferase] [gn:cps19f1]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae type 19f
							capsular polysaccharidebiosynthesis operon, (cps19fabcdefghijklmno) genes, complete
14242842_c1_27	307	2910	822	273	798	1.60E−79	[ac:p46354] [gn:deod:pnp] [or: bacillus subtilis ] [ec:2.4.2.1] [de:(pnp)] [sp:p46354]
							[db:swissprot]
14257963_c1_20	308	2911	201	66	222	1.70E−18	[ac:p37807] [gn:rpmb] [or: bacillus subtilis ] [de:50s ribosomal protein 128] [sp:p37807]
							[db:swissprot]
14258567_c3_73	309	2912	1548	515	2041	3.10E−211	[ln:efu94356] [ac:u94356] [pn:glycerol kinase] [gn:glpk] [or: enterococcus faecalis ]
							[db:genpept-bct] [de: enterococcus faecalis glycerol kinase (glpk) gene, complete cds.]
							[nt:atp-dependent glycerol kinase] [le:17] [re:1522] [di:direct]
14259687_c2_199	310	2913	207	68	72	0.042	[ln:cet24b8] [ac:z68338] [pn:t24b8.6] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid t24b8, complete sequence.] [nt:protein predicted
							using genefinder; similarity to] [le:35567:36199:36888] [re:35662:36396:37205]
							[di:direct
14301576_c3_40	311	2914	270	89	135	2.90E−09	[ac:b30868] [pn:hypothetical protein 1 (insertion sequence is861)] [gn:is861-orf1]
							[or: streptococcus agalactiae ] [db:pir]
14301577_c3_106	312	2915	573	190	422	1.10E−39	[ac:b30868] [pn:hypothetical protein 1 (insertion sequence is861)] [gn:is861-orf1]
							[or: streptococcus agalactiae ] [db:pir]
14301577_c3_43	313	2916	192	63	62	0.34	[ln:ae001137] [ac:ae001137:ae000783] [pn: b. burgdorferi predicted coding region
							bb0265] [gn:bb0265] [or: borreiia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-
							bct] [de: borrelia burgdorferi (section 23 of 70) of the complete genome.] [nt:hypothetic
14303400_c3_117	314	2917	2787	928	273	4.30E−22	[ac:c69477] [pn:hypothetical protein af1820] [or: archaeoglobus fulgidus ] [db:pir]
14329062_f3_20	315	2918	798	265	286	1.10E−31	[ln:humorf006] [ac:d38552] [gn:kiaa0073] [or: homo sapiens ] [sr: homo sapiens male
							myeloblast cell-line kg-1 cdna to mrna] [db:genpept-pri2] [de:human mrna for kiaaOO73
							gene, partial cds.] [nt:the ha1539 protein is related to cyclophilin.] [le:<1] [re:1939]
14329687_c2_73	316	2919	504	167	417	3.80E−39	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
14351463_f3_39	317	2920	468	155	202	1.90E−15	[ac:p50360] [gn:y4hp] [or:rhizobium sp] [sr:ngr234,] [de:hypothetical 61.7 kd protein
							y4hp] [sp:p50360] [db:swissprot]
14353302_f2_7	318	2921	336	111	56	0.52	[ln:bmu46757] [ac:u46757] [pn:p74] [gn:p74] [or: bombyx mori nuclear polyhedrosis
							virus] [sr:bombyx mori nuclear polyhedrosis virus strain=bangalore (bgl)] [db:genpept-
							vrl] [de: bombyx mori nuclear polyhedrosis virus p26 (p26) and p7.5 (p10)genes,
							complete
1442212_f2_8	319	2922	309	102	63	0.12	[ln:mgu02228] [ac:u02228] [pn:unknown] [fn:unknown] [or: mycoplasma genitalium ]
							[db:genpept-bct] [de: mycoplasma genitalium random genomic clone xa9, partial cds.]
							[le:73] [re:304] [di:complement]
14458518_c2_89	320	2923	1212	403	1556	7.60E−160	[ac:p96993] [gn:galk] [or: streptococcus mutans ] [ec:2.7.1.6] [de:galactokinase,]
							[sp:p96993] [db:swissprot]
14460312_f1_4	321	2924	234	77	65	0.1	[ac:p06859] [or: trimeresurus flavoviridis ] [sr:,habu] [ec:3.1.1.4]
							[de:(phosphatidylcholine 2-acylhydrolase)] [sp:p06859] [db:swissprot]
14460965_c2_25	322	2925	801	266	1165	2.10E−118	[ln:af030373] [ac:af030373] [pn:cpsb] [gn:cpsb] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-264 alpha, 1-6-
							glucosidase(dexb) gene, partial cds; putative regulatory protein (cpsa) andcpsb (cpsb)
							genes, complete cds
14472557_c2_13	323	2926	948	315	1082	1.30E−109	[ac:q07637] [gn:pyk] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.7.1.40] [de:pyruvate kinase,] [sp:q07637] [db:swissprot]
1447812_f3_17	324	2927	243	80	180	4.90E−14	[ac:p37545] [gn:yabd] [or: bacillus subtilis ] [de:hypothetical 29.2 kd protein in mets-
							ksga intergenic region] [sp:p37545] [db:swissprot]
1448437_f3_31	325	2928	1266	421	1397	7.30E−152	[ac:q02145] [gn:ilva] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:4.2.1.16] [de:deaminase)] [sp:q02145] [db:swissprot]
14485036_f1_4	326	2929	201	66	59	0.28	[ln:s44068s6] [ac:s44109] [gn:2c/3a] [or:hepatitis a virus] [sr:hepatitis a virus lsh/s]
							[db:genpept-vr1] [de:vp1 . . . 3c/3d [hepatitis a virus hav, lsh/s, genomic, 6 genes, 293nt,
							segment 6 of 7].] [nt:this sequence comes from FIG. 3. author-given] [le:1] [	-
14485908_f1_1	327	2930	345	114	276	3.30E−24	[ac:p14949] [gn:trxa:trx] [or: bacillus subtilis ] [de:thioredoxin (trx)] [sp:p14949]
							[db:swissprot]
14486437_c2_31	328	2931	537	178	262	3.40E−22	[ac:p11990] [gn:ply] [or: streptococcus pneumoniae ] [de:pneumolysin (thiol-activated
							cytolysin)] [sp:p11990] [db:swissprot]
1449063_f1_3	329	2932	471	156	773	7.10E−77	[ln:spu43526] [ac:u43526] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae neuraminidase b (nanb) gene, complete cds,and
							neuraminidase (nana) gene, partial cds.] [nt:orf-1] [le:1480] [re:1932] [di:direct]
14532630_c3_42	330	2933	240	79	96	3.90E−O5	[ln:cet01b7] [ac:z66499] [pn:t01b7.8] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid t01b7, complete sequence.] [le:25192:25559:25822]
							[re:25417:25767:25881] [di:complementjoin]
14532813_f2_13	331	2934	669	222	323	3.40E−29	[ac:a69988] [pn:conserved hypothetical protein ytag] [gn:ytag] [or: bacillus subtilis ]
							[db:pir]
14537557_f2_5	332	2935	414	137	128	2.50E−07	[ac:p43752] [gn:nrdd:hi0075] [or: haemophilus influenzae ] [ec:1.17.4.2] [de:anaerobic
							ribonucleoside-triphosphate reductase,] [sp:p43752] [db:swissprot]
14542337_c3_136	333	2936	639	212	510	5.30E−49	[ln:shu75349] [ac:u75349] [pn:putative permease.shid] [or: serpulina hyodysenteriae ]
							[db:genpept-bct] [de: serpulina hyodysenteriae shi operon, periplasmic-iron-
							bindingproteins shia and shib, putative abc transporter shic, and putativepermeases shid
							and shi
14554687_f3_37	334	2937	792	263	304	3.90E−26	[ac:p32399] [gn:yhge] [or: bacillus subtilis ] [de:hypothetical 84.1 kd protein in hemy-
							gltt intergenic region (orfb)] [sp:p32399] [db:swissprot]
1456517_c1_165	335	2938	219	72	52	0.38	[ac:p19030] [gn:env] [or:feline immunodeficiency virus] [sr:,isolate san diego:fiv]
							[de:gp100 and gp36)] [sp:p19030] [db:swissprot]
14586692_c1_18	336	2939	1377	458	2436	4.20E−253	[ac:p29851] [gn:malm] [or: streptococcus pneumoniae ] [ec:2.4.1.25]
							[de:(disproportionating enzyme) (d-enzyme)] [sp:p29851] [db:swissprot]
1459437_f1_42	337	2940	198	65	58	0.34	[ac:q03440] [gn:caad] [or:bacillus ps3] [sr:, thermophilic bacterium ps-3] [ec:1.9.3.1]
							[de:subunit 4b)] [sp:q03440] [db:swissprot]
14625378_c2_25	338	2941	480	159	136	8.50E−09	[ln:u91581] [ac:u91581:u04057] [fn:unknown] [or: lactococcus lactis lactis] [db:genpept-
							bct] [de: lactococcus lactis lactis lacticin 481 operon, preprolacticin 481(lcta), lctm
							(lctm), lctt (lctt), lctf (lctf), lcte (lcte), andlctg (lctg) genes, complete cds
14627263_c1_11	339	2942	357	118	319	9.20E−29	[ac:q08352] [gn:ald:spovn] [or: bacillus subtilis ] [ec:1.4.1.1] [de:alanine dehydrogenase,
							(stage v sporulation protein n)] [sp:q08352] [db:swissprot]
14636303_c1_10	340	2943	375	124	372	2.20E−34	[ac:p05657] [gn:rpma] [or: bacillus subtilis ] [de:50s ribosomal protein 127 (b130) (b124)]
							[sp:p05657] [db:swissprot]
14641917_f2_34	341	2944	2421	806	1677	1.10E−172	[ac:s57636:s65957] [pn:5-methyltetrahydropteroyltriglutamate--homocysteine s-
							methyltransferase,:cobalamin-independent methionine
							synthase:tetrahydropteroylglutamate methyltransferase:cobalamin-independent
							methionine synthase:tetrahydropteroylglutamate met
14642885_f1_3	342	2945	1611	536	512	3.20E−49	[ln:ae001183] [ac:ae001183:ae000783] [pn:conserved hypothetical integral membrane]
							[gn:bb0843] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 69 of 70) of the complete genome.] [nt:similar to gb:1
14644437_f1_1	343	2946	225	74	96	3.90E−05	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re: 1 74] [di :direct]
14647627_f1_4	344	2947	363	120	495	2.00E−47	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:396] [re:671] [di:direct]
14648452_f2_9	345	2948	1926	641	2987	0	[ln:spz82001] [ac:z82001] [pn:pcpa] [gn:pepa] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: s.pneumoniae pcpa gene and open reading frames.] [nt:the n-
							terminal domain of pcpa is similar to] [le:2064] [re:4190] [di:direct]
14649015_c2_12	346	2949	483	160	180	5.60E−13	[ln:sc7b7] [ac:a1009199] [pn:hypothetical atp/gtp binding protein] [gn:sc7b7.01c]
							[or: streptomyces coelicolor ] [db:genpept-bct] [de: streptomyces coelicolor cosmid 7b7.]
							[nt:sc7b7.01c, unknown atp/gtp binding protein, partial] [le:<1] [re:1878] [di:complem
14649018_f1_2	347	2950	1965	654	1093	8.80E−111	[ac:h69626] [pn:pts fructose-specific enzyme iibc component frua] [gn:frua] [or: bacillus
							subtilis ] [db:pir]
14649062_c1_45	348	2951	249	82	157	1.30E−11	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:dircct]
14650312_c1_58	349	2952	396	131	62	0.2	[ac:q59450] [gn:rpme] [or: haemophilus ducreyi ] [de:50s ribosomal protein 131]
							[sp:q59450] [db:swissprot]
14651712_f3_25	350	2953	384	127	534	1.50E−51	[ac:p12875] [gn:rpln] [or: bacillus subtilis ] [de:50s ribosomal protein 114] [sp:p12875]
							[db:swissprot]
14656952_f3_10	351	2954	213	70	83	0.00011	[ac:p51241] [gn:ycf16] [or: porphyra purpurea ] [de:probable atp-dependent transporter
							ycf16] [sp:p51241] [db:swissprot]
14657877_c3_12	352	2955	447	148	245	6.40E−21	[ac:s76382:s77050] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803,, pcc
							6803] [sr:pcc 6803,] [db:pir]
14657877_f2_4	353	2956	249	82	138	1.40E−09	[ac:s75211] [pn:transposase:protein sll1930:protein sll1930] [or:synechocystis sp.]
							[sr:pcc 6803,, pcc 6803] [sr:pcc 6803,] [db:pir]
14661002_c2_82	354	2957	447	148	243	1.00E−20	[ac:s76382:s77050] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803,, pcc
							6803] [sr:pcc 6803,] [db:pir]
14661002_c3_85	355	2958	450	149	239	2.70E−20	[ac:s76382:s77050] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803,, pcc
							6803] [sr:pcc 6803,] [db:pir]
14664135_f2_26	356	2959	708	235	146	8.80E−09	[ln:ae001161] [ac:ae001161:ae000783] [pn: b. burgdorferi predicted coding region
							bb0592] [gn:bb0592] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-
							bct] [de: borrelia burgdorferi (section 47 of 70) of the complete genome.] [nt:hypothe tic
14664638_f2_1	357	2960	1077	358	325	4.30E−32	[ac:h69762] [pn:two-component sensor histidine kinase [ycl homolog yclk] [gn:yclk]
							[or: bacillus subtilis ] [db:pir]
14665887_f3_6	358	2961	300	99	192	2.60E−15	[ac:p54510] [gn:yqhl] [or: baciilus subtilis ] [de:hypothetical 14.6 kd protein in gcvt-
							spoiiiaa intergenic region] [sp:p54510] [db:swissprot]
14667267_f2_25	359	2962	1020	339	1008	8.90E−102	[ac:q02000] [gn:trpd] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[cc:2.4.2.18] [de:anthranilate phosphoribosyltransferase,] [sp:q02000] [db:swissprot]
14730012_f1_6	360	2963	585	194	574	8.70E−56	[ac:q02003] [gn:trpg] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:4.1.3.27] [de:transferase)] [sp:q02003] [db:swissprot]
14730300_f1_2	361	2964	2667	888	2946	0	[ac:q05873] [gn:vals] [or: bacillus subtilis ] [ec:6.1.1.9] [de:valyl-trna synthetase, (vaiine-
							-trna ligase) (valrs)] [sp:q05873] [db:swissprot]
14730343_f1_8	362	2965	939	312	117	0.00013	[ac:p44018] [gn:hi0585] [or: haemophilus influenzae] [de:hypothetical protein hi0585]
							[sp:p44018] [db:swissprot]
14740652_f3_13	363	2966	1047	348	98	0.033	[ln:llabihgen] [ac:x97651] [gn:abih] [or: lactococcus lactis ] [db:genpept-bct] [de: l.lactis
							abih gene.] [nt:abortive phage resistance mechanism] [le:1095] [re:2135] [di:direct]
14742938_c2_29	364	2967	783	260	631	7.90E−62	[ac:p30293] [gn:livg:livf] [or: salmonella typhimurium ] [de:livg (liv-i protein g)]
							[sp:p30293] [db:swissprot]
14742942_c3_133	365	2968	792	263	299	2.00E−45	[ac:a69431] [pn:pyruvate formate-lyase2 activating enzyme (pflc) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
14812883_c1_6	366	2969	828	275	950	1.20E−95	[ac:p45872] [gn:prfa] [or: bacillus subtilis ] [de:peptide chain release factor 1 (rf-1)]
							[sp:p45872] [db:swissprot]
14844191_c2_71	367	2970	453	150	120	4.50E−97	[ac:p49330] [gn:rgg] [or: streptococcus gordonii challis] [de:rgg protein] [sp:p49330]
							[db:swissprot]
14844427_f1_4	368	2971	744	247	635	3.00E−62	[ac:p46339] [gn:yqgh] [or: bacillus subtilis ] [de:region (orf72)] [sp:46339]
							[db:swissprot]
14845252_f1_2	369	2972	462	153	131	3.80E−08	[ac:q08695] [gn:mst101(1)] [or: drosophila hydei ] [sr:,fruit fly) [de:axoneme-associated
							protein mst101(1)] [sp:q08695] [db:swissprot]
14845252_f3_23	370	2973	258	85	64	0.7	[ac:js0722] [pn:cytochrome p450 alk4, alkane-inducible] [gn:alk4] [cl:cytochrome
							p450] [or: candida maltosa ] [db:pir]
14849093_c1_23	371	2974	294	97	147	1.50E−10	[ln:mtccgnme] [ac:z47547] [gn:putative orf79.1] [fn:unknown] [or:mitochondrion
							chondrus crispus ] [sr:carragheen] [db:genpept-pln] [de: c.crispus complete
							mitochondrial genome.] [nt:unique orf] [le:5713] [re:5952] [di:direct]
14849093_c1_43	372	2975	294	97	147	1.50E−10	[ln:mtccgnme] [ac:z47547] [gn:putative orf79.1] [fn:unknown] [or:mitochondrion
							chondrus crispus ] [sr:carragheen] [db:genpept-pln] [de: c.crispus complete
							mitochondrial genome.] [nt:unique orf] [le:5713] [re:5952] [di:direct]
14849093_c2_37	373	2976	294	97	147	1.50E−10	[ln:mtccgnme] [ac:z47547] [gn:putative orf79.1] [fn:unknown] [or:mitochondrion
							chondrus crispus ] [sr:carragheen] [db:genpept-pln] [de: c.crispus complete
							mitochondrial genome.] [nt:unique orf] [le:5713] [re:5952] [di:direct]
14849093_c3_31	374	2977	294	97	147	1.50E−10	[ln:mtccgnme] [ac:z47547] [gn:putative orf79.1] [fn:unknown] [or:mitochondrion
							chondrus crispus] [sr:carragheen] [db:genpept-pln] [de: c.crispus complete
							mitochondrial genome.] [nt:unique orf] [le:5713] [re:5952] [di:direct]
14850633_c2_51	375	2978	237	78	37	0.12	[ln:mmu29078] [ac:u29078] [pn:t-cell antigen-receptor beta chain v beta 8.1] [or: mus
							musculus ] [sr:house mouse] [db:genpept-rod] [de: mus musculus clone b6-8-6 v beta 8. 1
							t-cell antigen-receptor betachain mrna, partial cds.] [le:<1] [re:
14853437_c1_50	376	2979	738	245	363	2.00E−33	[ac:s70678] [pn:bpl protein] [gn:bplg] [or: bordetella pertussis ] [db:pir]
14865702_c3_27	377	2980	186	61	162	4.00E−12	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
14867137_c1_25	378	2981	1002	333	895	8.40E−90	[ac:b70015] [pn:thioredoxin reductase homolog yumc] [gn:yumc] [or: bacillus subtilis ]
							[db:pir]
14867262_f3_20	379	2982	270	89	124	4.20E−08	[ac:b30868] [pn:hypothetical protein 1 (insertion sequence is861)] [gn:is861-orf I]
							[or: streptococcus agalactiae ] [db:pir]
14867302_c2_31	380	2983	294	97	63	0.9	[ln:atu90439] [ac:u90439] [gn:t06d20.6] [or: arabidopsis thaliana ] [sr:thale cress]
							[db:genpept-pln] [de: arabidopsis thaliana chromosome ii bac t06d20 genomic
							sequence,complete sequence.] [nt:fmrfamide precursor isolog] [le:16754] [re:17173]
							[di:direct]
14867802_f2_9	381	2984	384	127	78	0.16	[ln:dbrapoliaa] [ac:125278] [pn:apolipophorin-iii] [or: derobrachus geminatus ]
							[sr: derobrachus geminatus cdna to mrna] [db:genpept-inv] [de: derobrachus geminatus
							apolipophorin-iii mrna, 3′ end.] [le:<1] [re:570] [di:direct]
14875150_f3_14	382	2985	411	136	159	2.60E−11	[ac:a30286:s06431:a64943] [pn:phosphotransferase system enzyme ii,, mannose-
							specific, factor iii:mannose permease, factor iii:phosphotransferase system enzyme ii-a,
							mannose-specific:phosphotransferase system enzyme iii, mannose-specific:protein-npi-
							phosph
14876507_c3_121	383	2986	456	151	90	0.049	[ac:p74635] [gn:slr0753] [or:synechocystis sp] [sr:pcc 6803,] [de:hypothetical 48.0 kd
							protein slr0753] [sp:p74635] [db:swissprot]
14876687_f3_4	384	2987	2751	916	849	5.20E−167	[ac:s75577] [pn:cation-transporting atpase, pacl:protein slr0822:protein slr0822]
							[gn:pacl] [or:synechocystis sp.] [sr:pcc 6803,, pcc 6803] [sr:pcc 6803,] [ec:3.6.1.-]
							[db:pir]
14880087_f2_8	385	2988	705	234	293	5.20E−26	[ln:d88121] [ac:d88121) [pn:cprd12 protein) [or: vigna unguiculata ] [sr: vigna
							unguiculata one-month-old cdna to mrna] [db:genpept-pln] [de: vigna unguiculata mrna
							for cprd12 protein, complete cds.] [le:76] [rc:879] [di:direct]
14881563_f3_8	386	2989	534	177	469	1.20E−44	[ac:h69334) [pn:glutamine abc transporter, atp-binding protein (glnq) homolog]
							[or: archaeoglobus fulgidus ] [db:pir)
14881692_c1_23	387	2990	1491	496	682	3.10E−67	[ac:q42598] [gn:thrc] [or: arabidopsis thaliana ] [sr:,mouse-ear cress] [ec:4.2.99.2]
							[de:threonine synthase,] [sp:q42598] [db:swissprot]
14882950_f1_4	388	2991	303	100	55	0.58	[ln:bmophbrc] [ac:d38443] [pn:br-c homologue] [or: bombyx mori ] [sr: bombyx mori
							(strain:daizo) day 4 third instar fat body cdna t] [db:genpept-inv] [de:silkworm mrna for
							br-c homologue, partial cds.] [nt:btb domain] [le:<1] [re:
14890687_c3_29	389	2992	822	273	502	3.70E−48	[ac:a69756] [pn:adhesion protein homolog ycdh] [gn:ycdh] [or: bacillus subtilis ] [db:pir]
14929776_f2_4	390	2993	963	321	99	0.094	[ac:p47047] [gn:mtr4:yj1050w:j1158) [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:mrna transport regulator mtr4] [sp:p47047] [db:swissprot]
14932701_f2_10	391	2994	747	248	550	3.00E−53	[ln:af001926] [ac:af001926] [pn:xylan esterase 1] [gn:axe1] [or:thermoanaerobacterium
							sp. ‘jw/sl ys485’] [db:genpept-bct] [de:thermoanaerobacterium sp. jw/sl ys485' beta-
							xylosidase (xylb) andxylan esterase 1 (axe1) genes, complete cds.) [le:1788] [re:275
14957812_f3_5	392	2995	210	69	71	0.27	[ac:p36033] [gn:fre2:ykl220c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:ferric reductase transmembrane component 2 precursor] [sp:p36033] [db:swissprot]
14960402_f2_1	393	2996	1566	521	95	0.26	[ac:q60181] [gn:rpob1:mj1041] [or: methanococcus jannaschii ] [ec:2.7.7.6] [de:dna-
							directed rna polymerase subunit b′,) [sp:q60181] [db:swissprot]
14962788_f2_21	394	2997	1014	337	424	6.80E−40	[ac:h69162] [pn:conserved hypothetical protein mth48] [gn:mth48]
							[or: methanobacterium thermoautotrophicum ] [db:pir]
14968783_c3_5	395	2998	606	201	240	2.20E−20	[ac:e69826] [pn:1-acylglycerol-3-phosphate o-acyltransfera homolog yhdo] [gn:yhdo]
							[or: bacillus subtilis ] [db:pir]
15016562_f1_7	396	2999	798	265	8J0	8.50E−81	[ac:q01999] [gn:trpc] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[cc:4.1.1.48] [de:indole-3-glycerol phosphate synthase, (igps)] [sp:q01999]
							[db:swissprot]
15032817_c2_26	397	3000	2292	763	1053	7.30E−152	[ln:ecoglgpa] [ac:j03966] [or: escherichia coli ] [sr: e.coli dna] [db:genpept-bct) [de: e.coli
							glgp gene encoding alpha-glucan phosphorylase, complete cds.] [nt:alpha-glucan
							phosphorylase (ec 2.4.1.1)] [le:61] [re:2490] [di:direct]
15032962_c2_40	398	3001	1182	393	748	3.20E−74	[ac:q08432] [gn:patb] [or: bacillus subtilis ] [ec:2.6.1.-] [de:putative aminotransferase b,]
							[sp:q08432] [db:swissprot]
15037512_c1_16	399	3002	288	95	63	0.71	[ac:s43481] [pn:maturase homolog] [or: escherichia coli ] [db:pir]
15039700_c3_56	400	3003	1041	346	158	5.30E−09	[ac:p39346] [gn:yjgv] [or: escherichia coli ] [de:intergenic region] [sp:p39346]
							[db:swissprot]
15041062_f1_6	401	3004	1116	371	645	2.60E−63	[ac:a70019] [pn:opine catabolism homolog yurr] [gn:yurr] [or: bacillus subtilis ] [db:pir]
15041592_c1_25	402	3005	636	211	880	3.30E−88	[ac:q07296] [gn:purc] [or: streptococcus pneumoniae ] [ec:6.3.2.6] [de:(saicar
							synthetase)] [sp:q07296] [db:swissprot]
15042693_f1_2	403	3006	1671	556	1617	2.10E−206	[ln:ssu35633] [ac:u35633] [pn:dextran glucosidase dexs] [gn:dexs] [or: streptococcus
							suis ] [db:genpept-bct] [de: streptococcus suis dextran glucosidase dexs (dexs) gene,
							completecds.] [le:372] [re:2000] [di:direct]
15048442_f3_7	404	3007	291	96	315	2.40E−28	[ac:c47154:s11366] [pn:ribosomal protein s16:ribosomal protein bs17] [cl: escherichia
							coli ribosomal protein s16] [or: bacillus subtilis ] [db:pir]
15057811_c1_24	405	3008	219	72	138	1.40E−09	[ac:q48509] [gn:lafx] [or: lactobacillus johnsonii ] [de: bacteriocin lactacin f, subunit lafx
							precursor] [sp:q48509] [db:swissprot]
15057817_f1_4	406	3009	855	284	461	8.20E−44	[ac:c69588] [pn:l-arabinose transport (integral membrane protein) araq] [gn:araq]
							[or: bacillus subtilis ] [db:pir]
15078880_c2_18	407	3010	231	76	71	0.034	[ac:i53641] [pn:mucin] [gn:muc5ac] [or: homo sapiens ] [sr:,man] [db:pir] [mp:11p15.5-
							11p15.5]
15085936_c3_64	408	3011	402	133	234	9.30E−20	[ac:p54510] [gn:yqhl] [or: bacillus subtilis ] [de:hypothetical 14.6 kd protein in gcvt-
							spoiiiaa intergenic region] [sp:p54510] [db:swissprot]
15086077_f3_63	409	3012	402	133	299	2.6E−26	[ac:s68598] [pn:sucrose-6-phosphate hydrolase scrb] [gn:scrb] [or: streptococcus
							sobrinus ] [sr:strain 6715,, strain 6715] [sr:strain 6715,] [db:pir]
15094392_c3_109	410	3013	1410	469	759	2.20E−75	[ac:p96613] [gn:murf] [or: bacillus subtilis ] [ec:6.3.2.15] [de:(d-alanyl-d-alanine-adding
							enzyme)] [sp:p96613] [db:swissprot]
15102052_c1_56	411	3014	306	101	65	0.41	[ac:s57388:s50423] [pn:hypothetical protein orf00958] [or: saccharomyces cerevisiae ]
							[db:pir] [mp:151]
15125911_c3_36	412	3015	1104	367	1337	1.20E−136	[ln:llu80410] [ac:u80410] [pn:phosphopentornutase] [gn:deob] [or: lactococcus lactis
							cremoris] [db:genpept-bct] [de: lactococcus lactis cremoris phosphopentornutase (deob)
							and purinenucleoside phosphorylase (deod) genes, complete cds.] [nt:deob; deob mutant
							i
156313_f2_23	413	3016	867	288	225	8.40E−19	[ln:stu40830] [ac:u40830] [pn:epsf] [gn:epsf] [or: streptococcus thermophilus ]
							[db:genpept-bct] [de: streptococcus thermophilus deod gene, partial cds and epsa,
							epsb,epsc, epsd, epse, epsf, epsg, epsh, epsi, epsj, epsk, epsl, epsm,orf14.9 protein
							genes, com
15632763_f3_39	414	3017	309	102	68	0.88	[ac:p50236] [gn:sta2:sth2] [or: mus musculus ] [sr:,mouse] [ec:2.8.2.2]
							[de:sulfotransferase) (st)] [sp:p50236] [db:swissprot]
15632843_f1_3	415	3018	1113	370	86	0.4	[ac:q49412] [gn:mg310] [or: mycoplasma genitalium ] [ec:3.1.-.-] [de:putative
							esterase/lipase 1,] [sp:q49412] [db:swissprot]
15657827_f2_13	416	3019	768	255	678	8.30E−67	[ln:bacpk] [ac:d13095] [pn:undefined open reading frame] [or:baciilus
							stearothermophilus] [sr: bacillus stearothermophilus (strain:nca1503) dna] [db:genpept-
							bct] [de: b. stearothermophilus phosphofructokinase and pyruvate kinasegenes.] [le:<1]
							[re:963] [di:
15657910_f1_2	417	3020	612	203	61	0.52	[ln:hscrbp12] [ac:x07437] [pn:cellular retinol binding protein (crbp)] [or: homo sapiens ]
							[sr:human] [db:genpept-pri1] [de:human dna for cellular retinol binding protein (erbp)
							exons 1 and2.] [sp:p09455] [le:671:1244] [re:743:1422] [di:directjoin]
15660381_f1_8	418	3021	186	61	52	0.031	[ac:s69320] [pn:probable membrane protein ylr428c:hypothetical protein 19576.3-a]
							[or: saccharomyces cerevisiae ] [db:pir] [mp:12r]
15662712_f3_40	419	3022	1074	357	710	3.40E−70	[ac:s77268] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803,, pcc 6803]
							[sr:pcc 6803,] [db:pir]
15664702_f3_21	420	3023	873	290	783	6.20E−78	[ac:p37468] [gn:ksga] [or: bacillus subtilis ] [ec:2.1.1.-] [de:dimethyltransferase)]
							[sp:p37468] [db:swissprot]
15665881_f3_55	421	3024	852	283	1149	1.00E−116	[ac:p42361] [or: streptococcus gordonii challis] [de:29 kd membrane protein in psaa
							5'region (orf1)] [sp:p42361] [db:swissprot]
15665956_c1_62	422	3025	465	154	129	1.20E−08	[ac:a69866] [pn:hypothetical protein ykul] [gn:ykul] [or: bacillus subtilis ] [db:pir]
15673387_f3_15	423	3026	393	130	207	1.40E−16	[ac:p23861] [gn:potd] [or: escherichia coli ] [de:spermidine/putrescine-binding
							periplasmic protein precursor (spbp)] [sp:p23861] [db:swissprot]
15682680_f1_3	424	3027	222	73	75	0.21	[ac:a48467] [pn:myosin heavy chain] [cl:myosin heavy chain:myosin head homology]
							[or: brugia malayi ] [db:pir]
15682706_f3_32	425	3028	201	66	63	0.12	[ac:s74531] [pn:hypothetical protein ss11326] [or:synechocystis sp.] [sr:pcc 6803,, pcc
							6803] [sr:pcc 6803,] [db:pir]
15683575_c1_24	426	3029	201	66	511	0.034	[ln:mmpax4gen] [ac:y09584] [gn:pax-4] [or: mus musculus ] [sr:house mouse]
							[db:genpept-rod] [de: m.musculus pax-4 mma, partial.] [le:<1] [re:
15683575_c2_38	427	3030	201	66	51	0.034	[ln:mmpax4gen] [ac:y09584] [gn:pax-4] [or: mus musculus ] [sr:house mouse]
							[db:genpept-rod] [de: m.musculus pax-4 mrna, partial.] [le:<1] [re:
15683575_c3_32	428	3031	249	82	69	0.053	[ln:fmu60399] [ac:u60399] [pn:envelope glycoprotein e1] [or:fort morgan virus]
							[db:genpept-vrl] [de:fort morgan virus envelope glycoprotein e1 gene, partial cds.]
							[le:<1] [re:
156952_f1_2	429	3032	2928	975	4577	0	[ln:spnana] [ac:x72967] [pn:neuraminidase] [gn:nana] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [ec:3.2.1.18] [de: s.pneumoniae nana gene.] [le:1239] [re:4346]
							[di:direct]
15709567_f3_8	430	3033	1968	655	3338	0	[ac:p18791:p18792] [gn:amia] [or: streptococcus pneumoniae ] [de:oligopeptide-binding
							protein amia precursor] [sp:p18791:p18792] [db:swissprot]
157202_c2_64	431	3034	807	268	549	3.90E−53	[ac:p44697] [gn:thid:hi0416] [or:haemophilus inf1uenzae] [ec:2.7.4.7] [de:(hmp p
							kinase)] [sp:p44697] [db:swissprot]
15727067_f2_3	432	3035	927	308	125	4.60E−O5	[ln:bsu43200] [ac:u43200] [pn:antifreeze glycopeptide afgp polyprotein]
							[or: boreogadus saida ] [db:genpept-vrt] [de: boreogadus saida antifreeze glycopeptide
							afgp poiyprotein precursorgene, complete cds.] [nt:cleavage of polyprotein at conserved
15734632_f1_6	433	3036	207	68	58	0.31	[ac:s74698] [pn:udp-glucose dehydrogenase:protein slr1299:protein slr1299]
							[or:synechocystis sp.] [sr:pcc 6803,, pcc 6803] [sr:pcc 6803,] [db:pir]
15740813_f1_2	434	3037	909	302	293	5.20E−26	[ln:ae001181] [ac:ae001181:ae000783] [pn:xylose operon regulatory protein (xylr-2)]
							[gn:bb0831] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 67 of 70) of the complete genome.] [nt:similar to pid
15741566_c2_5	435	3038	204	67	60	0.23	[ac:s72692) [pn:probable membrane protein q0320] [or:mitochondrion saccharomyces
							cerevisiae ] [db:pir]
15745293_f3_18	436	3039	2385	794	2020	5.10E−209	[ac:a69584] [pn:alanyl-trna synthetase alas] [n:alas] [or: bacillus subtilis ] [db:pir]
157760_c3_17	437	3040	930	309	808	1.40E−80	[ln:sau92073] [ac:u92073] [pn:macrolide-efflux protein] [gn:mrea] [fn:resistance to 14-
							and 15-membered macrolides] [or: streptococcus agalactiae ] [db:genpept-bct]
							[de: streptococcus agalactiae macrolide-efflux protein (mrea) gene,complete cds.]
							[le:119) [r
157778_c3_12	438	3041	603	200	335	1.80E−30	[ac:q57127:o05062] [gn:hi1453] [or: haemophilus influenza ] [de:hypothetical protein
							hi1453 precursor] [sp:q57127:o05062] [db:swissprot]
15781287_c1_58	439	3042	192	63	69	0.088	[ac:s38922] [pn:hypothetical protein 10] [or:phage phi-c31] [db:pir]
15781287_c1_8	440	3043	234	77	78	0.0077	[ln:af001782] [ac:af001782] [pn:agrb] [gn:agrb] [or: staphylococcus aureus ] [db:genpept-
							bct] [de: staphylococcus aureus strain sa502a agrb (agrb), agrd (agrd) andagrc (agrc)
							genes, complete cds.] [le:1] [re:564] [di:direct]
15781577_c2_47	441	3044	708	235	285	9.60E−5	[ac:s60902:s49238:s44071] [pn:cdp-ribitol pyrophosphorylase] [or: haemophilus
							influenzae ] [db:pir]
15806563_f2_21	442	3045	1023	340	562	1.60E−54	[ac:p23876:p77097] [gn:fepd] [or: escherichia coli ] [de:ferric enterobactin transport
							protein fepd] [sp:p23876:p77097] [db:swissprot]
15829580_c2_37	443	3046	543	180	128	4.00E−07	[ac:a54527] [pn:110k antigen:pk110] [or: plasinodium knowlesi ] [db:pir]
15831456_f3_9	444	3047	303	100	102	3.20E−05	[ln:spu40453] [ac:u40453:m19350) [pn:repressor] [or: streptococcus pyogenes phage
							t12] [db:genpept-phg] [de: streptococcus pyogenes phage t12 repressor, excisionase
							(xis),integrase (int) and erythrogenic toxin a precursor (spea) genes,complete cds.]
							[nt:lam
15863812_c3_71	445	3048	756	251	225	8.40E−19	[ac:d69219] [pn:integrase-recombinase protein] [gn:mth893] [or: methanobacterium
							thermoautotrophicum ] [db:pir]
159712_f1_2	446	3049	450	149	207	6.80E−17	[ac:p54520] [gn:yqhz] [or: bacillus subtilis ] [de:n utilization substance protein b
							homolog (nusb protein)] [sp:p54520] [db:swissprot]
16022202_f1_3	447	3050	849	282	99	0.0091	[ac:b70039] [pn:hypothetical protein yvfs] [gn:yvfs] [or: bacillus subtilis ] [db:pir]
16036263_c3_83	448	3051	273	90	74	0.077	[ln:tsal6bglt) [ac:z70242] [pn:beta-glucosidase] [gn:bglt] [fn:hydrolyses aryl-beta-
							glucosides] [or:thermococcus sp.] [sr:thermococcus sp] [db:genpept-bct] [ec:3.2.1.21]
							[de:thermococcus sp. al662 bglt gene.] [nt:belongs to family1 of glycosyl hydrolases
16053812_c1_18	449	3052	378	125	303	4.50E−27	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
16053812_c2_53	450	3053	450	149	398	3.90E−37	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
16053812_c3_89	451	3054	450	149	400	2.40E−37	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
16072127_f2_23	452	3055	969	322	1137	1.90E−115	[ac:q54430] [gn:scrr] [or: streptococcus mutans ] [de:sucrose operon regulatory protein]
							[sp:q54430] [db:swissprot]
16072903_f2_14	453	3056	993	330	551	2.40E−53	[ln:rcu23145] [ac:u23145] [pn:pentose-5-phosphate-3-epimerase] [gn:cbbe]
							[or: rhodobacter capsulatus ] [db:genpept-bct] [ec:5.1.3.1] [de: rhodobacter capsulatus
							calvin cycle carbon dioxidc fixation operon:fructose-1,6-/sedoheptulose-1,7-
							bisphosphate aldolase
160907_c1_35	454	3057	513	170	64	0.22	[ln:spu31811] [ac:u31811] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes immunogenic secreted protein precursor (isp)gene,
							complete cds.] [nt:orf] [le:1816] [re:2067] [di:direct]
16112750_f3_21	455	3058	183	60	60	0.23	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
16130393_f1_4	456	3059	198	65	53	0.17	[ac:s73583] [pn:probable lipoprotein d02_orf302:mg068 homolog d02_orf302:mg068
							homolog d02_orf302] [or: mycoplasma pneumoniae ] [sr:atcc 29342,, atcc 29342]
							[sr:atcc 29342,] [db:pir]
16172562_c2_9	457	3060	507	169	115	3.80E−07	[ln:bc332ab] [ac:y09323] [pn:hypothetical protein] [gn:332b] [fn:unknown] [or: bacillus
							cereus ] [db:genpept-bct] [de: b.cereus dna, two genes with unknown function.] [le:761]
							[re:1198] [di:direct]
16176563_f2_36	458	3061	399	132	556	7.00E−54	[ln:spdnagcpo] [ac:yl1463] [or: streptococcus pneumoniae] [db:genpept-bct]
							[de: streptococcus pneumoniae dnag, rpod, cpoa genes and orf3 and orf5.] [nt:orf3]
							[le:1689] [re:2018] [di:direct]
16210952_c1_58	459	3062	333	110	56	0.51	[ln:mtccgnme] [ac:z47547] [gn:putative orf75] [fn:unknown] [or:mitochondrion
							chondrus crispus ] [sr:carragheen] [db:genpept-pln] [de: c.crispus complete
							mitochondrial genome.] [nt:unique orf] [le:17892] [re:18119] [di:complement]
16250802_c2_32	460	3063	1005	334	508	8.60E−49	[ac:g69627] [pn:cell-division protein ftsx] [gn:ftsx] [or: bacillus subtilis ] [db:pir]
16252030_f3_6	461	3064	369	122	101	7.30E−O5	[ac:p20186] [or: streptomyces fradiae ] [de:hypothetical 35.5 kd protein in transposon
							tn4556] [sp:p20186] [db:swissprot]
16417880_c3_57	462	3065	477	158	273	6.90E−24	[ac:p54536] [gn:yqiy] [or: bacillus subtilis ] [de:intergenic region] [sp:p54536]
							[db:swissprot]
16423778_f2_18	463	3066	1569	522	122	0.00026	[ac:a40813] [pn:protein kinase tik,] [c1:protein kinase tik:double-stranded rna-binding
							repeat homology] [or: mus musculus ] [sr:, house mouse] [ec:2.7.1.-] [db:pir]
16430313_f3_37	464	3067	930	309	954	4.70E−96	[ac:h70019] [pn:abc transporter (atp-binding protein) homolog yury] [gn:yury]
							[or: bacillus subtilis] [db:pir]
16437511_f1_1	465	3068	393	130	92	0.0045	[ac:g70007] [pn:conserved hypothetical protein yuef] [gn:yuef] [or: bacillus subtilis ]
							[db:pir]
16486458_f2_19	466	3069	831	276	610	1.30E−59	[ac:a70001] [pn:abc transporter (atp-binding protein) homolog ytsc] [gn:ytsc]
							[or: bacillus subtilis] [db:pir]
16492202_c1_74	467	3070	1038	345	718	4.80E−71	[ln:hvu95372] [ac:u95372] [pn:dehydrogenase] [or: haloferax volcanii ] [db:genpept-bct]
							[de: haloferax volcanii plasmid phv3 aminotransferase gene, partial cds,dehydrogenase
							and hydantoinase genes, complete cds, andoligopeptide abc transporter gene, partial
16519833_c1_12	468	3071	441	147	127	1.10E−07	[in:r75conop] [ac:113688] [gn:kfra] [or:plasmid r751] [sr:plasmid r751 dna] [db:genpept-
							bct] [de:plasmid r751 central control/partitioning operon (including incc,kfra, kora, and
							korb genes), complete cds's.] [le:2408] [re:3466] [di:direct]
16522192_f1_7	469	3072	261	86	151	1.20E−10	[ln:lllpk214] [ac:x92946:y10522] [pn:transposase] [gn:tnpa] [or: lactococcus lactis ]
							[db:genpept-bct] [de: lactobacillus lactis plasmid pk214, complete sequence.] [le:13438]
							[re:14256] [di:complement]
16525312_c3_220	470	3073	849	282	656	1.80E−64	[ln:btp9011] [ac:x84706] [pn:major head protein] [gn:mhp] [or:bacteriophage b1]
							[db:genpept-phg] [de:bacteriophage tp901-1 genomic region.] [le:360] [re:1181]
							[di:direct]
16526937_f2_27	471	3074	465	154	136	2.30E−09	[ac:p51192] [or: porphyra purpurea ] [de:hypothetical 20.1 kd protein in ycf37-psaf
							intergenic region (orf174)] [sp:p51192) [db:swissprot]
16582592_f2_6	472	3075	216	71	67	0.57	[ln:cef36g9] [ac:z81533] [pn:f36g9.1] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid f36g9, complete sequence.] [le:365:569:1280:1476]
							[re:524:1006:1429:1796] [di:complementjoin]
16585937_c2_45	473	3076	576	191	116	0.00054	[ln:pcu43145] [ac:u43145] [pn:repeat organellar protein] [or: plasmodium chabaudi ]
							[db:genpept-inv] [de: plasmodium chabaudi repeat organellar protein gene, complete
							cds.] [nt:rope] [le:2158] [re:7977] [di:direct]
16587812_c3_106	474	3077	201	66	65	0.073	[ln:ddi1093a] [ac:m19469] [or: dictyostelium discoideum ] [sr:dictyostelium discoideum
							(strain b or ax3) dna] [db:genpept-pln) [de: dictyostelium discoideum 109 gene 3,
							complete cds.] [nt:orf] [le:3334] [re:
165936_c3_72	475	3078	1431	476	97	0.013	[ac:jc5040] [pn:positive regulatory protein mga] [gn:mga4] [or: streptococcus pyogenes ]
							[db:pir]
16601053_c2_6	476	3079	1536	511	256	4.10E−19	[ln:spspsa2] [ac:aj002054] [pn:spsa protein] [fn:iga binding protein] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae siga binding.] [le:1]
							[re:1620] [di:direct]
16664127_f1_1	477	3080	312	103	237	4.50E−20	[ac:p02395] [gn:rpll] [or: micrococcus luteus ] [sr:, micrococcus lysodeikticus ] [de:50s
							ribosomal protein 17/112 (ma1/ma2)] [sp:p02395] [db:swissprot]
16664717_c1_19	478	3081	660	219	72	0.049	[ln:vupfe2a] [ac:x67755] [pn:ferritin 2] [gn:pfe2] [or: vigna unguiculata ] [sr:cowpea]
							[db:genpept-pln] [de: v.unguiculata pfe2 gene for plant ferritin exons 1 and 2, partial.]
							[le:<1:200) [re:119:
16673385_f1_7	479	3082	1011	336	1027	8.60E−104	[ac:p44631] [gn:ruvb:hi0312] [or: haemophilus influenzae ] [de:holliday junction dna
							helicase ruvb] [sp:p44631] [db:swissprot]
16676575_f2_5	480	3083	285	94	68	0.089	[ln:efu25095] [ac:u25095] [pn:pyrimidine biosynthesis protein p] [gn:pyrp]
							[or: enterococcus faecalis] [db:genpept-bct] [de: enterococcus faecalis plasmid pkv48
							pyrimidine biosynthesis proteinp (pyrp) gene, partiai cds.] [le:<1] [re:
16681580_c3_86	481	3084	795	264	647	1.60E−63	[ac:h69828] [pn:abc transporter (atp-binding protein) homolog yheh] [gn:yheh]
							[or: bacillus subtilis ] [db:pir]
16695162_f1_13	482	3085	243	80	173	2.70E−13	[ac:p26832] [or: clostridium perfringens ] [de:hypothetical protein in nagh 5′region (orfa)
							(fragment)] [sp:p26832] [db:swissprot]
16696063_f3_14	483	3086	693	230	467	1.90E−44	[ac:p23861] [gn:potd] [or: escherichia coli ] [dc:spermidine/putrescine-binding
							periplasmic protein precursor (spbp)] [sp:p23861] [db:swissprot]
16797928_c2_10	484	3087	222	73	189	1.50E−14	[ac:c69830] [pn:glucanase homolog yhfe] [gn:yhfe] [or: bacillus subtilis ] [db:pir]
16800652_c2_67	485	3088	1134	377	447	1.40E−48	[ac:p20708] [gn:sucb:odhb] [or:azotobacter vinelandii] [ec:2.3.1.61] [de:dehydrogenase
							complex,] [sp:p20708] [db:swissprot]
16806097_c2_36	486	3089	834	277	409	2.70E−38	[ac:p54535] [gn:yqix] [or: bacilius subtilis] [de:intergenic region precursor] [sp:p54535]
							[db:swissprot]
16823757_c3_18	487	3090	282	93	72	0.14	[ac:p34579] [gn:t20g5.6] [or: caenorhabditis elegans ] [de:hypothetical 51.6 kd protein
							t20g5.6 in chromosome iii [sp:p34579] [db:swissprot]
16824056_c3_155	488	3091	285	94	387	5.70E−36	[ln:spparcetp] [ac:z67739] [pn:dna transposase] [or: streptococcus pneumoniae]
							[db:genpept-bct] [de: s.pneumoniae parc, pare and transposase genes and unknown orf.]
							[nt:novel insertion sequence related to is861 of group] [le:<1] [re:435] [di:direct]
16828438_c1_54	489	3092	1317	438	1544	1.40E−58	[ac:p50743] [gn:yphc] [or: bacillus subtilis ] [de:region] [sp:p50743] [db:swissprot]
16828811_f3_6	490	3093	291	96	267	3.00E−23	[ac:e69993] [pn:conserved hypothetical protein ytia] [gn:ytia] [or: bacillus subtilis ]
							[db:pir]
16835063_f2_18	491	3094	822	273	702	2.40E−69	[ac:p19672] [gn:yqxc:yqif] [or: bacillus subtilis ] [de:hypothetical 29.7 kd protein in fold-
							ahrc intergenic region] [sp:p19672] [db:swissprot]
16835937_c3_212	492	3095	489	162	371	2.80E−34	[ln:af004379] [ac:af004379] [or: streptococcus thermophilus bacteriophage sfi21]
							[db:genpept-phg] [de: streptococcus thermophilus bacteriophage sf121 dna
							replicationmodule.] [nt:orf157] [le:16] [re:489] [di:direct]
16917202_c1_68	493	3096	501	166	161	5.00E−12	[ac:g69776] [pn:conserved hypothetical protein yddq] [gn:yddq] [or: bacillus subtilis ]
16922711_c1_39	494	3097	255	84	78	0.0032	[db:pir]
							[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
16929030_c1_13	495	3098	1848	615	1041	2.80E−105	[ac:p54719] [gn:yfic] [or: bacillus subtilis ] [de:hypothetical abc transporter atp-binding
							protein 2 in glvbc 3'region] [sp:p54719] [db:swissprot]
16969387_c1_64	496	3099	210	69	66	0.19	[ln:bbpbrgea] [ac:x87127] [gn:orf-e] [or: borrelia burgdorferi ] [sr:lyme disease
							spirochete] [db:genpept-bct] [de: b.burgdorferi repeated dna element, 30.5 kb circular
							plasmid copy.] [le:3707] [re:4339] [di:direct]
16987803_f3_18	497	3100	615	204	43	0.4	[ln:humachea] [ac:rn76539] [pn:acetylcholinesterase] [gn:ache] [or: homo sapiens ]
							[sr: homo sapiens (tissue library: cosmid) placenta dna] [db:genpept-pr1)] [de:human
							acetylcholinesterase (ache) gene, exons 2 and 3h, partialcds.] [le:<1:102] [re:31:
17000438_f1_1	498	3101	558	185	472	5.60E−45	[ac:p37545] [gn:yabd] [or: bacillus subtilis] [de:hypothetical 29.2 kd protein in mets-
							ksga intergenic region] [sp:p37545] [db:swissprot]
17010927_f2_23	499	3102	501	166	371	2.80E−34	[ac:p39303] [gn:sgaa] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69)] [sp:p39303]
							[db:swissprot]
17072162_f1_15	500	3103	888	295	378	5.10E−35	[ac:q54087] [gn:lrp] [or: streptococcus equisimilis ] [de:leucine rich protein] [sp:q54087]
							[db:swissprot]
17073437_c1_8	501	3104	411	136	224	1.10E−18	[ac:p54721] [gn:yfie] [or: bacillus subtilis ] [de:hypothetical 31.5 kd protein in glvbc
							3'region] [sp:p54721] [db:swissprot]
17088594_c2_7	502	3105	398	132	164	1.90E−11	[ln:mh68repr] [ac:y09060] [pn:serine threonine rich glycoprotein] [gn:bprf1] [or:murine
							herpesvirus 68] [db:genpept-vrl] [de:murine herpesvirus type 68 dna, representative
							region.] [nt:positional homologue to ebv bllf1] [le:9583) [re:11034] [di:direct]
175080_f1_6	503	3106	1119	372	1036	9.60E−105	[ac:p32816] [gn:glda:gld] [or: bacillus stearothermophilus ] [ec:1.1.1.6] [de:glycerol
							dehydrogenase, (gldh)] [sp:p32816] [db:swissprot]
179027_c1_21	504	3107	189	62	65	0.12	[ac:p24873] [gn:nd6] [or: ascaris suum ] [sr:,pig roundworm:ascaris lumbricoides]
							[ec:1.6.5.3] [de:nadh-ubiquinone oxidoreductase chain 6,] [sp:p24373] [db:swissprot]
18089418_f3_5	505	3108	368	123	123	3.50E−07	[ln:cee02a10] [ac:z81053] [pn:e02a10.2] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid e02a10 complete sequence.] [nt:protein predictcd
							using genefinder] [le:11007:11551:11984] [re:11504:11813:12016]
189388_c3_81	506	3109	1092	363	415	6.10E−39	[ac:g69979] [pn:proteinase homolog yrrn] [gn:yrrn] [or: bacillus subtilis ] [db:pir]
1900_f2_15	507	3110	261	86	77	0.004	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae] [db:genpept-bct)
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
193962_c1_25	508	3111	222	73	57	0.0045	[ln:ae001150] [ac:ae001150:ae000783] [pn: b. burgdorferi predicted coding region
							bb0452] [gn:bb0452] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-
							bct] [de: borrelia burgdorferi (section 36 of 70) of the complete genome.] [nt:hypothetic
195302_f3_12	509	3112	1032	343	1212	2.10E−123	[ln:llu92974) [ac:u92974:m90760:m90761] [pn:unknown] [or: lactococcus lactis ]
							[db:genpept-bct] [de:lactococcus lactis unknown gene, partial cds, and hisc
							(hisc),unknown, hisg (hisg), unknown, hisb (hisb), unknown, hish (hish),hisa (hisa), hisf
							(hisf), hisi
19532650_f1_12	510	3113	984	327	1580	2.20E−162	[ln:spdacao) [ac:x99400] [pn:membrane protein] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: s.pneumoniae daca gene and orf.] [le:709] [re:1818]
							[di:complement]
19538212_f3_46	511	3114	348	115	157	5.10E−11	[ac:p15039] [gn:purr] [or: escherichia coli ] [de:purine nucleotide synthesis repressor]
							[sp:p15039] [db:swissprot]
19539007_f2_8	512	3115	309	102	167	1.20E−12	[ln:af036720] [ac:af036720] [pn:unknown] [or: lactococcus lactis ] [db:genpept-bct]
							[de: lactococcus lactis n-acetylmuramidase (acrna) gene, complete cds.] [nt:orfa; similar
							to sequence encoded by genbank] [le:2043] [re:2327] [di:complement]
1954587_c3_17	513	3116	690	229	417	3.80E−39	[ac:p54592] [gn:yhch] [or: bacillus subtilis ] [de:intergenic region] [sp:p54592]
							[db:swissprot]
19547127_f1_10	514	3117	468	155	99	0.0036	[ac:b26696] [pn:hypothetical protein 1 (cyb-coii intergenic region)] [or:mitochondrion
							leishmania tarentolae ] [db:pir]
19547153_c3_21	515	3118	618	205	229	3.20E−19	[ac:c69661] [pn:transcriptional activator of multidrug-efflux transporter genes mta]
							[gn:mta] [or: bacillus subtilis ] [db:pir]
19548126_c1_94	516	3119	198	65	61	0.051	[ac:jc2125:a28007:a05320:ph1825] [pn:chymase, precursor:chymotrypsin-like
							proteinase:mast cell proteinase i:skeletal muscle protease] [cl:trypsin:trypsin homology]
							[or: rattus norvegicus ] [sr:, norway rat] [ec:3.4.21.39) [db:pir]
19557826_c2_84	517	3120	189	62	52	0.83	[ac:p47724] [gn:deod] [or: mycoplasma pirum ] [ec:2.4.2.1] [de:(pnp) (fragment)]
							[sp:p47724] [db:swissprot]
19566888_f2_28	518	3121	948	315	376	8.30E−05	[ac:f69795] [pn:conserved hypothetical protein yerq] [gn:yerq] [or: bacillus subtilis ]
							[db:pir]
1957006_c3_215	519	3122	198	65	55	0.063	[ac:p32558] [gn:cdc68:spt16:ssf1:tgl1207w] [or: saccharomyces cerevisiae] [sr:,baker's
							yeast] [de:cell division control protein 68] [sp:p32558] [db:swissprot]
19572162_c2_40	520	3123	1146	381	905	7.30E−91	[ac:p31672] [or: lactobacillus delbrueckii ] [sr:,subspbulgaricus] [de:nifs protein
							homolog (fragment)] [sp:p31672] [db:swissprot]
195812_c1_27	521	3124	1113	370	1325	2.30E−135	[ln:af014460] [ac:af014460] [pn:ccpa] [gn:ccpa] [fn:regulator] [or: streptococcus
							mutans ] [db:denpept-bct] [de: streptococcus mutans pepq and ccpa genes, complete cds.]
							[le:1295] [re:2296] [di:direct]
1958311_c1_82	522	3125	216	71	224	1.10E−18	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
195836_f2_10	523	3126	399	132	604	5.80E−59	[ln:spparcetp] [ac:z67739] [pn:dna transposase] [or: streptococcus pneumoniae]
							[db:genpept-bct] [de: s.pneumoniae parc, pare and transposase genes and unknown orf.]
							[nt:novel insertion sequence related to is861 of group] [le:<1] [re:435] [di:direct]
1959633_f1_1	524	3127	390	129	165	9.90E−12	[ac:b70048] [pn:conserved hypothetical protein yvrp] [gn:yvrp] [or: bacillus subtilis]
							[db:pir]
1960215_f2_9	525	3128	672	223	266	3.80E−23	[ac:p12045] [gn:purk] [or: bacillus subtilis ] [ec:4.1.1.21] [de:(air carboxylase) (airc)]
							[sp:p12045] [db:swissprot]
196087_f3_45	526	3129	852	283	602	9.40E−59	[ac:p39805] [gn:lict:n15a] [or: bacillus subtilis] [de:transcription antiterminator lict]
							[sp:p39805] [db:swissprot]
19609375_c3_17	527	3130	1359	452	1740	2.40E−179	[ac:p30053] [gn:hiss] [or: streptococcus equisimilis ] [ec:6.1.1.21] [de:(hisrs)]
							[sp:p30053] [db:swissprot]
19610887_f3_27	528	3131	735	244	78	0.00095	[ln:ab010961] [ac:ab010961] [pn:mifr-1] [gn:mifr-1] [or: homo sapiens ] [sr: homo
							sapiens female uterus cdna to mrna] [db:genpept] [de: homo sapiens mrna for mifr-1,
							compelte cds.] [nt:metalloproteinase in the female reproductive] [le:28] [re:1200]
1961576_f3_22	529	3132	282	93	97	0.00011	[ac:jq0133] [pn:hypothetical 26.4k protein] [or: pseudomonas aeruginosa ] [db:pir]
19617307_c3_89	530	3133	810	269	262	7.90E−22	[ac:a41971:a60282:a33134] [pn:surface protein pspa precursor:pneumococcal surface
							protein a] [gn:pspa] [cl:cpl repeat homology] [or: streptococcus pneumoniae ] [db:pir]
19645327_f2_13	531	3134	468	155	546	8.10E−53	[ac:p50856] [gn:ribh] [or: actinobacillus pleuropneumoniae ] [sr:, haemophilus
							pleuropneumoniae ] [ec:2.5.1.9] [de:(lumazine synthase) (riboflavin synthase beta
							chain)] [sp:p50856] [db:swissprot]
19647553_f2_19	532	3135	297	98	48	0.99	[ln:celf28f5] [ac:u00045] [gn:f28f5.4] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid f28f5.]
							[le:14481:14590] [re:14540:14653] [di:complementjoin]
19648577_c2_46	533	3136	963	320	881	2.60E−88	[ln:mtu41100] [ac:u41100] [pn:ribonucleotide reductase r2-2 small subunit]
							[or: mycobacterium tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis
							ribonucleotide reductase r2-2 smallsubunit gene, partial cds.] [le:1] [re:
19652215_f1_5	534	3137	291	96	181	3.80E−14	[ac:d64631] [pn:conserved hypothetical protein hp0892] [or: helicobacter pylori ]
1968753_f3_37	535	3138	996	331	113	0.00079	[ac:s23345] [pn:hypothetical protein 9.6] [or: salmonella choleraesuis ] [db:pir]
1968963_f1_5	536	3139	378	125	61	0.22	[ac:s77762:s48585] [pn:hypothetical protein mc030] [or: mycoplasma capricolum ]
							[db:pir]
19689762_c3_59	537	3140	207	68	62	0.75	[ln:giapermeas] [ac:111576] [pn:permease] [gn:tpt1] [fn:nucleoside transporter]
							[or: giardia intestinalis ] [sr: giardia lamblia (individual_isolate ad-1) (library:sau3a and
							bamh] [db:genpept-inv] [de: giardia lamblia (clones p10ud and pbc2) permease (tpt1)
19694062_c3_37	538	3141	1371	456	435	4.70E−41	[ln:spu09239] [ac:u09239] [pn:putative polysaccharide polymerase] [gn:cps19fi]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae type 19f
							capsular polysaccharide biosynthesis operon, (cps19fabcdefghijklmno) genes, complete
							cds,and
19703305_f1_2	539	3142	879	292	515	1.6E−49	[ac:d69759] [pn:hypothetical protein ycgq] [gn:ycgq] [or: bacillus subtilis ] [db:pir]
19704067_f2_5	540	3143	1377	458	217	3.70E−15	[ln:scmalrefg] [ac:y07706] [pn:putative maltose-binding pootein] [gn:male]
							[or: streptomyces coelicolor ] [db:genpept-bct] [de: s.coelicolor malr, male, malf and
							malg genes.] [le:1620] [re:2891] [di:direct]
1971028_f2_14	541	3144	609	202	252	1.20E−21	[ac:a69859] [pn:hypothetical protein ykoe] [gn:ykoe] [or: bacillus subtilis ] [db:pir]
19720441_f3_43	542	3145	675	224	302	5.80E−27	[ac:p55454] [gn:y4fp] [or:rhizobium sp] [sr:ngr234,] [de:probable abc transporter
							periplasmic binding protein y4fp precursor] [sp:p55454] [db:swissprot]
19728387_c1_21	543	3146	264	87	65	0.073	[ac:s69295] [pn:probable membrane protein ylr217w:hypothetical protein 18167.25]
							[or: saccharomyces cerevisiae ] [db:pir] [mp:12r]
1973336_f3_13	544	3147	855	284	375	1.10E−34	[ac:p08188] [gn:manz:ptsm:gptb] [or: escherichia coli ] [de:(eii-m-man)] [sp:p08188]
							[db:swissprot]
1975062_c1_42	545	3148	1533	510	1650	8.30E−170	[ln:ab003927] [ac:ab003927] [pn:phospho-beta galactosidase 1] [gn:pbg1]
							[or: lactobacillus gasseri ] [sr: lactobacillus gasseri (strain:jcm 1031, isolate:human
							intestine] [db:genpept-bct] [de: lactobacillus gasseri dna for phospho-beta galactosidase
							1,complete
1975949_c1_13	546	3149	196	65	58	0.052	[ac:p40693] [gn:rpl7:rlp7:ynl002c:n2014] [or: saccharomyces cerevisiae ] [sr:,baker's
							yeast] [de:60s ribosomal protein 17] [sp:p40693] [db:swissprot]
19773932_c2_10	547	3150	936	311	174	8.20E−11	[ac:p19780] [or: streptomyces coelicolor ] [de:insertion element is110 hypothetical 43.6
							kd protein] [sp:p19780] [db:swissprot]
19782765_f1_1	548	3151	210	69	60	0.48	[ac:p12204] [gn:ycf3] [or: nicotiana tabacum ] [sr:,common tobacco] [de:hypothetical 19
							kd protein (orf168)] [sp:p12204] [db:swissprot]
1979530_c2_17	549	3152	288	95	54	0.67	[ac:b35762:s78079] [pn:hypothetical protein ybr109w-a] [or: saccharomyces cerevisiae ]
							[db:pir] [mp:2r]
1980340_c3_33	550	3153	567	188	234	9.30E−20	[ln:u91581] [ac:u91581:u04057] [fn:unknown] [or: lactococcus lactis lactis] [db:genpept-
							bct] [de: lactococcus lactis lactis lacticin 481 operon, preprolacticin 481(lcta), lctm
							(lctm), lctt (lctt), lctf (lctf), lcte (lcte), andlctg (lctg) genes, complete cds
1980340_f2_29	551	3154	684	227	234	9.30E−20	[ln:u91581] [ac:u91581:u04057] [fn:unknown] [or: lactococcus lactis lactis] [db:genpept-
							bct] [de: lactococcus lactis lactis lacticin 481 operon, preprolacticin 481(lcta), lctm
							(lctm), lctt (lctt), lctf (lctf), lcte (lcte), andlctg (lctg) genes, complete cds
1980340_f2_34	552	3155	789	262	247	3.90E−21	[ac:b47342] [pn:transposase homolog, lct 5'-region] [or: lactococcus lactis subsp. lactis]
							[db:pir]
1980340_f2_7	553	3156	789	262	247	3.90E−21	[ac:b47342] [pn:transposase homolog, lct 5'-region] [or: lactococcus lactis subsp. lactis]
							[db:pir]
19804837_f3_11	554	3157	1077	358	986	1.90E−99	[ln:llpeppgen] [ac:y08842] [pn:aminopeptidase p] [gn:pepp] [or: lactococcus lactis ]
							[db:genpept-bct] [ec:3.4.1.9] [de: l.lactis pepp gene.] [le:14] [re:1072] [di:direct]
19823260_c1_22	555	3158	1053	350	166	1.10E−09	[ac:h69839] [pn:multidrug resistance protein homolog yitg] [gn:yitg] [or: bacillus
							subtilis ] [db:pir]
1984691_c2_22	556	3159	420	139	386	7.30E−36	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
1989092_c3_82	557	3160	2556	851	2585	6.90E−269	[ac:p47847] [gn:seca] [or:listeria monocytogenes] [de:preprotein translocase seca
							subunit] [sp:p47847] [db:swissprot]
1989763_f1_2	558	3161	402	133	82	0.14	[ac:s76881] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803,, pcc 6803]
							[sr:pcc 6803,] [db:pir]
199062_c2_91	559	3162	1122	373	1214	1.30E−123	[ac:p54453] [gn:yqeh] [or: bacillus subtilis ] [de:hypothetical 41.0 kd protein in nucb-
							arod intergenic region] [sp:p54453] [db:swissprot]
199087_c1_20	560	3163	819	272	660	6.70E−65	[ac:p09997:p76737] [gn:yida] [or: escherichia coli ] [de:hypothetical 29.7 kd protein in
							ibpa-gyrb intergenic region] [sp:p09997:p76737] [db:swissprot]
19938778_c3_17	561	3164	195	64	53	0.055	[ac:p22375] [or: ascobolus immersus ] [de:hypothetical 19.7 kd protein (orf2)]
							[sp:p22375] [db:swissprot]
19938778_f1_4	562	3165	195	64	43	0.094	[ac:p15936] [gn:uvib] [or: clostridium perfringens ] [de:bacteriocin uvib precursor]
							[sp:p15936] [db:swissprot]
19938778_f1_6	563	3166	195	64	53	0.055	[ac:p22375] [or: ascobolus immersus] [de:hypothetical 19.7 kd protein (orf2]
							[sp:p22375] [db:swissprot]
19938778_f3_36	564	3167	195	64	43	0.039	[ac:p15936] [gn:uvib] [or: clostridium perfringens ] [de:bacteriocin uvib precursor]
							[sp:p15936] [db:swissprot]
19942250_c1_7	565	3168	183	60	45	0.028	[ln:hivu56361] [ac:u56361] [pn:p17] [gn:gag] [or:human immunodeficiency virus type
							l] [sr:human immunodeficiency virus type 1 strain=et3099] [db:genpept-vrl] [de:human
							immunodeficiency virus type 1 matrix protein p17 (gag) gene,partial cds.] [nt:matrix pr
19962511_c2_39	566	3169	1914	637	97	0.0058	[ln:lmu77367] [ac:u77367] [pn:internalin] [gn:inlf] [or:listeria monocytogenes]
							[db:genpept-bct] [de:listeria monocytogenes internalin (inlf) gene, complete cds.]
							[le:373] [re:2838] [di:direct]
20000394_c2_25	567	3170	1244	414	595	5.20E−58	[ac:q08792] [gn:ycxd] [or: bacillus subtilis ] [de:hypothetical 50.8 kd protein in srfa4-sfp
							intergenic region (ortf8)] [sp:q08792] [db:swissprot]
2000405_c1_I5	568	3171	381	126	74	0.063	[ac:s17200] [pn:protein kinase ospk4.4,] [or: oryza sativa ] [sr:, rice] [ec:2.7.1.-] [db:pir]
20020277_f1_5	569	3172	498	165	285	3.70E−25	[ln:mtv030] [ac:al021428] [pn:abc-transporter atp-binding subunit] [gn:mtv030.17]
							[or: mycobacterium tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis
							sequence v030.] [nt:mtv030.17, abc-transporter atp-binding subunit,] [le:20047]
							[re:21039] [d
20025330_f2_25	570	3173	474	157	354	1.80E−32	[ac:c70019] [pn:nifu protein homolog homolog yurv] [gn:yurv] [or: bacillus subtilis ]
							[db:pir]
20047575_f1_9	571	3174	864	287	808	1.40E−80	[ac:q01997] [gn:trpa] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[cc:4.2.1.20] [de:tryptophan synthase alpha chain,] [sp:q01997] [db:swissprot]
20095277_f2_28	572	3175	666	221	242	1.30E−20	[ln:d89902] [ac:d89902] [pn:high-glycine tyrosine keratin type ii.4] [or: mus musculus ]
							[sr: mus musculus skin cdna to mrna, clone:7y9(2)] [db:genpept-rod] [de:mouse mrna
							for high-glycine tyrosine keratin type ii.4, completecds.] [le:35] [re:514] [di:direct
2009687_f3_7	573	3176	708	235	84	0.099	[ln:lpmito4sl] [ac:af002648] [pn:nadh dehydrogenase 6] [gn:nd6] [or: mitochondrion
							limulus polyphemus] [sr:atlantic horseshoe crab] [db:genpept-inv] [de:limulus
							polyphemus nadh dehydrogenase 41 (nd41) gene, partial cds,trna-thr, trna-pro genes,
							complete se
20116261_f2_2	574	3177	1557	518	774	5.60E−77	[ac:p34001] [or: streptococcus mutans ] [de:hypothetical protein in wapa 3'region
							(fragment)] [sp:p34001] [db:swissprot]
20134562_c1_49	575	3178	189	62	108	7.60E−06	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
20134702_c2_21	576	3179	672	223	373	2.20E−40	[ac:p53579] [gn:slr0918] [or:synechocystis sp] [sr:pcc 6803,] [ec:3.4.11.18] [de:m)]
							[sp:p53579] [db:swissprot]
20179702_f2_18	577	3180	1332	443	524	1.70E−50	[ac:p23545] [gn:phor] [or: bacillus subtilis ] [ec:2.7.3.-] [de:alkaline phosphatase
							synthesis sensor protein phor,] [sp:p23545] [db:swissprot]
20203137_f3_43	578	3181	507	168	75	0.75	[ac:c69780] [pn:hypothetical protein ydfe] [gn:ydfe] [or: bacillus subtilis ] [db:pir]
20314083_c1_42	579	3182	1800	599	616	3.10E−60	[ac:q11018] [gn:mtcy02b10.12] [or: mycobacterium tuberculosis ] [de:hypothetical abc
							transporter atp-binding protein cy02b10.12] [sp:q11018] [db:swissprot]
2031441_c2_32	580	3183	897	298	748	3.20E−74	[ac:e64608] [pn:conserved hypothetical protein hp0709] [or:helicobacter pylori] [db:pir]
20315817_c2_52	581	3184	213	70	62	0.15	[ac:i54359] [pn:apo-dystrophin-2] [gn:dmd] [cl:dystrophin:alpha-actinin actin-binding
							domain homology:spectrin/dystrophin repeat homology:ww repeat homology] [or:rattus
							sp.] [sr:, rat] [db:pir]
20333385_f3_12	582	3185	195	64	55	0.58	[ac:p49494] [gn:rps6] [or: odontella sinensis ] [de:chloroplast 30s ribosomal protein s6]
							[sp:p49494] [db:swissprot]
20334642_f2_33	583	3186	1806	601	1163	3.30E−118	[ac:q04505] [gn:dnag:dnae] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.7.7.-] [de:dna primase,] [sp:q04505] [db:swissprot]
20345626_c3_64	584	3187	198	65	54	0.45	[ln:mtcy180] [ac:z97193] [pn:hypothetical protein mtcy180.41c] [gn:mtcy180.41c]
							[or: mycobacterium tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis
							cosmid y180.] [nt:mtcy180.41c, unknown, len: 687. integral membrane] [le:37327]
							[re:39390] [di:
2035092_f3_9	585	3188	474	157	83	0.13	[ac:p40239] [gn:cd9] [or: felis silvestris catus] [sr:,cat] [de:cd9 antigen] [sp:p40239]
							[db:swissprot]
20353562_c1_26	586	3189	249	82	68	0.055	[ac:f27577:f27557] [pn:t-cell receptor beta chain v region (8/10-2)] [cl:immunoglobulin
							v region:immunoglobulin homology] [or: mus musculus ] [sr:, house mouse] [db:pir]
20366513_f2_26	587	3190	2589	862	2404	0	[ac:d69650] [pn:leucyl-trna synthetase leus] [gn:leus] [or: bacillus subtilis ] [db:pir]
2038181_f2_6	588	3191	1212	403	555	9.00E−54	[ac:p37631:p76705] [gn:yhin] [or: escherichia coli ] [de:hypothetical 43.8 kd protein in
							rhsb-pit intergenic region (f400)] [sp:p37631:p76705] [db:swissprot]
2039087_c3_51	589	3192	465	154	112	7.90E−07	[ac:p19079] [gn:cdd] [or: bacillus subtilis ] [ec:3.5.4.5] [de:cytidine deaminase, (cytidine
							aminohydrolase) (cda)] [sp:p19079] [db:swissprot]
20390950_f2_5	590	3193	441	146	88	0.0074	[ac:a49391] [pn:erythroid transcription factor nf-e2 chain p18] [cl:maf homology]
							[or: mus musculus ] [sr:,house mouse] [db:pir]
20392517_f2_30	591	3194	300	99	173	8.40E−13	[ln:abu09349] [ac:09349] [pn:udp-glucose 4-epimerase] [gn:exob2] [fn:udp-glucose to
							udp-galactose] [or: azospirillum brasilense ] [db:genpept-bct] [ec:5.1.3.2]
							[de: azospirillum brasilense sp7 udp-glucose 4-epimerase (exob2) gene,complete cds.]
							[le:65] [re:
20397912_c3_75	592	3195	315	104	536	9.30E−52	[ln:spu12567] [ac:u12567] [pn:orf3] [or: streptococuus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae p13 glycerol-3-phosphate dehydrogenase(glpd)gene,
							partial cds, and glycerol uptake facilitator (glpf)and orf3 genes, complete cds.] [nt:putai
2040875_f2_32	593	3196	2700	899	1556	7.60E−160	[ln:d89668] [ac:d89668:d50554] [pn:phosphoenolpyruvate carboxylase] [gn:ppc]
							[or: rhodopseudomonas palustris ] [sr: rhodopseudomonasp alustris dna] [db:genpept-bct]
							[ec:4.1.1.31] [de: rhodopseudomonas palustris gene for
							phosphoenolpyruvatecarboxylase, complet
20431562_c3_38	594	3197	1446	481	1482	5.30E−152	[ac:p00497] [gn:purf] [or: bacillus subtilis ] [ec:2.4.2.14]
							[de:phosphoribosylpyrophosphate amidotransferase) (atase)] [sp:p00497] [db:swissprot]
20433158_f2_16	595	3198	192	63	67	0.45	[ln:atmlohl] [ac:z95352] [pn:atmlo-hl] [gn:atmlo-hl] [fn:unknown] [or: arabidopsis
							thaliana ] [sr:thale cress] [db:genpept-pln] [de: a.thaliana atmlo-hl gene.] [le:93]
							[re:1673] [di:direct]
20447167_f3_49	596	3199	1227	408	1671	4.90E−172	[ac:q01998] [gn:trph] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:4.2.1.20] [de:tryptophan synthase beta chain,] ]sp:q101998] [db:swissprot]
20501029_c2_31	597	3200	290	96	309	1.10E−27	[ac:p21468] [gn:rpsf] [or: bacillus subtilis ] [de:30s ribsomal protein s6 (bs9)]
							[sp:p21468] [db:swissprot]
20506561_f3_4	598	3201	1104	367	1181	4.10E−120	[ac:p39148] [gn:glya:glyc:ipc-34d] [or: bacillus subtilis ] [ec:2.2.2.1] [de:(shmt)]
							[sp:p39148] [db:swissprot]
20507805_c3_34	599	3202	225	74	66	0.061	[ln:af012657] [ac:af012657] [pn:putative potassium transporter atkt2p] [gn:atk2]
							[or: arabidopsis thaliana ] [sr:thale cress] [db:genpept-pln] [de: arabidopsis thaliana
							putative potassium transporter atkt2p (atkt2)mrna, complete cds.] [le:4] [re:2388] [di:d
20507878_f3_38	600	3203	1464	487	843	2.70E−84	[ac:e69793] [pn:rna methyltransferase homolog yefa] [gn:yefa] [or: bacillus subtilis ]
							[db:pir]
20508568_f1_1	601	3024	1242	413	1796	2.80E−185	[ac:p16962] [gn:sagp] [or: streptococcus pyogenes ] [de: streptococcal acid glycoprotein]
							[sp:p16962] [db:swissprot]
20511590_f3_43	602	3205	237	78	75	0.013	[ac:p24515] [gn:cp18:s18] [or: drosophila virilis ] [sr:,fruit fly] [de:chorion protein s18]
							[sp:p24515] [db:swissprot]
20522586_c2_12	603	3206	192	63	48	0.7	[ln:cek10d3] [ac:z75545] [pn:k10d3.1] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhanditis elegans cosmid k10d3, complete sequence.] [nt:similar to glutamate
							receptor] [le:3060:3173:3546:3888] [re:3126:3414:3843:4000] [di:directjoin]
20525252_f1_15	604	3207	372	123	246	5.00E−21	[ac:jc4754] [pn:hypothetical 13.6k protein] [gn:recf] [or: lactococcus lactis ] [db:pir]
20564376_f3_14	605	3208	1995	664	93	0.45	[ln:celc14c11] [ac:u53141] [gn:c14c11.3] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genepept-inv] [de: caenorhabditis elegans cosmid c14c11.]
							[le:12418:12568:13331:13832] [re:12513:12651:13783:13962] [di:directjoin]
20580018_c2_48	606	3209	294	97	62	0.67	[ln:shu27488] [ac:u27488] [pn:glycoprotein gx] [or:suid herpesvirus 1] [db:genpept-vrl]
							[de:suid herpesvirus 1 glycoprotein gx mrna, partial cds.] [le:<1] [re:
20589692_f1_1	607	3210	1698	565	163	1.80E−09	[ac:p10901] [gn:alfa] [or: dicyostelium discoideum ] [sr;,slime mold] [ec:3.2.1.51]
							[de:fucohydrolase)] [sp:p10901] [db:swissprot]
2062893_c1_155	608	3211	471	156	77	0.85	[ln:ae001170] [ac:ae001170:ae000783] [pn:xylose operon regulatory protein (xylr-1)]
							[gn:bb0693] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 56 of 70) of the complete genome.] [nt:similar to gb:
2063427_c2_32	609	3212	294	97	378	5.10E−35	[ln:spu09239] [ac:u09239] [pn:possible polysaccharide transport protein] [gn:cps19fj]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae type 19f
							capsular polysaccharidesynthesis operon, (cps19fabcdefghijklmno) genes, complete
2064002_f2_6	610	3213	183	60	125	3.30E−08	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
2064007_c1_19	611	3214	216	71	178	8.00E−14	[ln:spnana] [ax:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
2069090_f2_12	612	3215	1284	427	1266	4.10E−129	[ac:p50855] [gn:riba] [or: actinobacillus pleuropneumoniae ] [sr:, haemophilus
							pleuropneumoniae ] [ec:3.5.4.25] [de:phosphate synthase (dhbp synthase)] [sp:p50855]
							[db:swissport]
2069827_c2_197	613	3216	3654	1217	299	1.70E−24	[ln:af011378] [ac:af011378] [pn:unknown] [or:bacteriophage sk1] [db:genpept-phg]
							[de:bacteriophage sk1 complete genome.] [nt:orf14] [le:8582] [re:11581] [di:direct]
20703387_f2_30	614	3217	1461	486	1318	1.30E−134	[ac:f70033] [pn:glucan 1,4-alpha-maltohydrolase homolog yvdf] [gn:yvdf] [or: bacillus
							subtilis] [db:pir]
20709802_c1_52	615	3218	1257	418	524	1.70E−50	[ac:p39604] [gn:ywcf:ipa-42d] [or: bacillus subtilis ] [de:hypothetical 43.3 kd protein in
							qoxd-vpr intergenic region] [sp:p39604] [db:swissprot]
20710412_c1_14	616	3219	576	191	307	1.70E−27	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
20735952_f1_2	617	3220	372	123	468	1.50E−44	[ln:sgu81957] [ac:81957] [pn:putative dna binding protein] [or: streptococcus gordonii ]
							[db:genpept-bct] [de: streptococcus gordonii rna polymerase beta′ subunit (rpoc),putative
							dna binding protein, putative abc transporter subunitcpmya (comya), putative a
20759688_f2_17	618	3221	360	119	391	2.10E−36	[ln:soorfs] [ac:z79691] [pn:orfb] [gn:orfb] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae yorf[a,b,c,d,e], ftsl, pbpx and regr genes.] [le:1914] [re:2372]
							[di:complement]
207836_c2_17	619	3222	765	254	170	5.50E−11	[ac:s40407] [pn:oleoyl-[acyl-carrier-protein] hydrolase,] [or: brassica napus] [sr;,rape]
							[ec:3.1.2.14] [db:pir]
207838_c1_77	620	3223	537	178	333	3.00E−30	[ac:p94464] [gn:sun] [or: bacillus subtilis ] [de:sun protein (fragment)] [sp:p94464]
							[db:swissprot]
20787663_c2_42	621	3224	429	142	80	0.035	[ac:p55192] [gn:ybba] [or: bacillus subtilis] [de:hypothetical 14.3 kd protein in rrng-feuc
							intergenic region] [sp:p55192] [db:swissprot]
208375_c1_44	622	3225	696	231	270	1.00E−22	[ac:s74882] [pn:hypothetical protein sll151] [or:synechocystis sp.] [sr:pcc 6803,, pcc
							6803] [sr:pcc 6803,] [db:pir]
20878208_f3_5	623	3226	333	110	193	2.10E−15	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
20898562_f1_3	624	3227	1638	545	1318	1.30E−134	[ac:d69772] [pn:atp-dependent rna helicase homolog ydbr] [gn:ydbr] [or: bacillus
							subtilis] [db:pir]
20902160_c1_30	625	3228	843	280	96	0.063	[ac:q10479] [gn:spac17c9.07] [or: schizosaccharomyces pombe ] [sr:,fission yeast]
							[ec:2.4.1.-] [de:putative glucosyltransferase c17c9.07,] [sp:q10479] [db:swissprot]
20917202_f3_29	626	3229	876	291	336	1.40E-30	[ac:c69808] [pn:transporter homolog yfkh] [gn:yfkh] [or: bacillus subtilis ] [db:pir]
20917212_c2_69	627	3230	1200	399	515	1.60E−49	[ac:jn0097] [pn:secreted 45k protein precursor] [or: lactococcus lactis ] [db:pir]
20939052_c1_26	628	3231	471	156	106	9.20E−05	[ln:mtci65] [ac:z95584] [pn:unknown] [gn:mtci65.21c] [or: mycobacterium
							tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis cosmid i65.]
							[nt:mtci65.01, unknown, len:213. tbparse score is] [le:19042] [re:19683]
20943938_f3_6	629	3232	879	292	119	3.60E−05	[ac:s32215] [pn:hypothetical protein 1] [or: bacillus megaterium ] [db:pir]
209452_c1_36	630	3233	1131	376	888	4.60E−89	[ac:g69866] [pn:hippurate hydrolase homolog ykur] [gn:ykur] [or: bacillus subtilis]
							[db:pir]
20947876_f3_18	631	3234	642	213	411	1.60E−38	[ac:p37547] [gn:yabf] [or: bacillus subtilis] [de:hypothetical 20.7 kd protein in mets-
							ksga intergenic region] [sp:p37547] [db:swissprot]
20979688_f2_9	632	3235	564	187	190	4.30E−15	[lm:s71704] [ac:s71704] [pn:mip] [gn:mip] [or: legionella pneumophila ] [sr: legionella
							pneumophila philadelphia-1] [db:genpept-bct] [de:mip=24 kda macrophage infectivity
							potentiator protein [legionellapneumophila, philadelphia-1, genomic, 854 nt].] [nt:24 k
20980002_c1_33	633	3236	1110	369	932	1.00E−93	[ac:a69847] [pn:cystathionine gamma-synthase homolog yjci] [gn:yjci] [or: bacillus
							subtilis ] [db:pir]
210433_f1_4	634	3237	606	201	222	5.70E−18	[ac:p19579] [gn:capa] [or: bacillus anthracis ] [de:capa protein] [sp:p19579]
							[db:swissprot]
21125283_f2_4	635	3238	831	276			[ac:p08187] [gn:many:ptsp:pel] [or: escherichia coli ] [de:(eii-p-man)] [sp:p08187]
							[db:swissprot]
2117012_f1_3	636	3239	783	260	632	6.20E−62	[ac:d64564] [pn:hypothetical protein hp0356] [or: helicobacter pylori ] [db:pir]
2119063_c1_20	637	3240	306	101	80	0.013	[ln:seu77778] [ac:u77778:u29130] [pn:putative membrane protein] [gn:epih]
							[fn:involved in epidermin secretion] [or: staphylococcus epidermidis ] [db:genpept-bct]
							[de: staphylococcus epidermidis plasmid ptue32 putative abc transportersubunits (epig),
							(epie),
212811_c3_63	638	3241	873	290	969	1.20E−97	[ac:p22094] [or: lactococcus lactis : lactococcus lactis ] [sr:,subspcremoris: streptococcus
							cremoris :subsplactis: streptococcus lactis ] [de:hypothetical 30.9 kd protein in pepx
							5′region (orf1)] [sp:p22094] [db:swissprot]
2129587_f1_7	639	3242	255	84	135	2.90E−09	[ac:s28486] [pn:hypothetical protein 2] [or: vibrio cholerae ] [db:pir]
214000_c2_84	640	3243	510	169	160	4.40E−11	[ln:yspphhy] [ac:137084] [pn:phosphopyruvate hydratase] [or: schizosaccharomyces
							pombe ] [sr: schizosaccharomyces pombe cdna to mrna] [de:genpept-pln] [ec:4.2.1.11]
							[de: schizosaccharomyces pombe phosphopyruvate hydratase mrna, completecds.] [le:2]
							[re:1342]
2145308_f3_56	641	3244	792	263	365	1.20E−33	[ln:smu75471] [ac:u75471] [pn:high affinity branched chain amino acid] [gn:livg]
							[or: streptococcus mutans ] [db:genpept-bct] [de: streptococcus mutans putative high
							affinity branched chain aminoacid transport protein (livg) gene, partial cds.] [le:<1] [re:
2147338_f3_26	642	3245	282	93	325	2.10E−29	[ac:f69835] [pn:ribosomal protein s14 homolog yhza] [gn:yhza] [or: bacillus subtilis]
							[db:pir]
21484375_f2_12	643	3246	342	113	155	2.20E−11	[ln:vurnext26] [ac:x86030] [pn:extensin-like protein] [gn:ext26] [or: vigna unguiculata ]
							[sr:cowpea] [db:genpept-pln] [de: v.unguiculata mrna for extensine-like protein, ext26.]
							[le:<1] [re:495] [di:direct]
21485003_c1_24	644	3247	1305	434	360	4.10E−33	[ac:h69837] [pn:conserved hypothetical protein yisq] [gn:yisq] [or: bacillus subtilis]
							[db:pir]
2148577_c2_38	645	3248	915	304	1009	7.00E−12	[ln:cau76387] [ac:u76387] [pn:prpp synthetase] [gn:prs] [or: corynebacterium
							ammoniagenes ] [db:genpept-bct] [ec:2.7.6.1] [de: corynebacterium ammoniagenes n-
							acetyl glucoseamine 1-phosphateuridyltransferase (glmu) gene, partial cds, and prpp-
							synthetase(prs)
21487643_f2_3	646	3249	648	215	90	0.42	[ln:ae000784] [ac:ae000784] [pn: b. burgdorferi predicted coding region bbh09]
							[gn:bbh09] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi plasmid lp28-3, complete plasmid sequence.] [nt:hypothetical
							protein;
21489512_c3_107	647	3250	1932	643	2004	2.50E−207	[ac:s68599] [pn:phosphotransferase system enzyme ii,, sucrose-specific:sucrose-specific
							enzyme ii:sucrose-specific enzyme ii] [gn:scra] [cl:phosphototransferase system glucose-
							specific enzyme ii, factor iii homology] [or: streptococcus sobrinus ] [sr:strain 6
21490627_f3_39	648	3251	5919	1972	9473	0	[ln:spu47687] [ac:u47687] [pn:immunoglobulin a1 protease] [gn:iga] [or: streptococcus
							pneumoniae ] [sr: streptococcus pneumoniae strain=r6] [db:genepept-bct] [ec:3.4.24.13]
							[de: streptococcus pneumoniae immunoglobulin a1 protease (iga) gene, complete cds.]
							[le:
2150417_f1_1	649	3252	882	293	680	5.10E−67	[ac:f69999] [pn:conserved hypothetical protein ytqi] [gn:ytqi] [or: bacillus subitilis ]
							[db:pir]
21515635_f1_6	650	3253	885	294	431	1.20E−40	[ac:d70018] [pn:sugar permease homolog yurm] [gn:yurm] [or: bacillus subtilis] [db:pir]
2151575_f3_33	651	3254	735	244	534	1.50E−51	[ac:p39304] [gn:sgah] [or: escherichia coli ] [ec:4.1.2.-] [de:3-hexulose 6-phosphate
							formaldehyde lyase)] [sp:p39304] [db:swissprot]
2157543_c1_44	652	3255	186	61	58	0.38	[ac:p39628] [gn:spsh:ipa-70d] [or: bacillus subtilis] [de:spore coat polysaccharide
							biosynthesis protein spsh] [sp:p39628] [db:swissprot]
21517543_f1_1	653	3256	186	61	56	0.49	[ac:q04703] [gn:ns7] [or:canine enteric coronavirus] [sr:k378,ccv] [de:nonstructural
							protein 7(11 kd protein) (x3 protein) (6a protein)] [sp:q04703] [db:swissprot]
21539687_f1_12	654	3257	1011	336	1189	5.90E−121	[ac:q59935] [gn:pmi] [or: streptococcus mutans ] [ec:5.3.1.8] [de:(pmi)
							(phosphohexomutase)] [sp:q59935] [db:swissprot]
21540626_c1_39	655	3258	381	126	245	6.40E−21	[ac:p32731] [gn:rbfa] [or: bacillus subtilis ] [de:ribosome-binding factor a(p15b
							protein)] [sp:32731] [db:swissprot]
21572212_c3_66	656	3259	1953	650	3286	0	[ac:p14160] [gn:hexb] [or: streptococcus pneumoniae ] [de:dna mismatch repair protein
							hexb] [sp:p14160] [db:swissprot]
21581638_c2_62	657	3260	321	106	470	9.10E−45	[ln:af030367] [ac:af030367] [pn:maturase-related protein] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae strain nctc11906 alpha, 1-
							6-glucosidase(dexb) gene, partial cds; maturase-related protein, putativeregulatory
							protein (cp
21585012_c3_97	658	3261	966	321	1444	5.60E−148	[ln:spu93576] [ac:93576] [pn:ribonuclease hii] [gn:rnhb] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae ribonuclease hii (rnhb)
							gene, completecds.] [nt:rnase hii; ribonuclease h] [le:117] [re:989] [di:direct]
21602312_c1_25	659	3262	705	234	801	7.70E−80	[ac:d69627] [pn:cell-division atp-binding protein ftse] [gn:ftse] [or: bacillus subtilis ]
							[db:pir]
21609512_f1_16	660	3263	183	60	74	0.0084	[ln:cet04f8] [ac:z66565] [pn:t04f8.8] [or: caenorhabditis elegans ] [db:genepept-inv]
							[de: caenorhabditis elegans cosmid t04f8, complete sequence.] [nt:cdna est yk121f1.5
							comes from this gene] [le:34969] [re:35259] [di:direct]
21616412_c1_8	661	3264	1725	574	300	4.70E−37	[ln:mtv039] [ac:a1021942] [pn:hypothetical protein] [gn:mtv039.22] [or: mycobacterium
							tuberculosis ] [db:genpept] [de: mycobacterium tuberculosis sequence v039.]
							[nt:mtv039.22, len:877. unknown. contains ps00699] [le:25221] [re:27854] [di:direct]
21617902_c2_15	662	3265	219	72	239	3.00E−20	[ac:74638] [pn:alanine dehydrogenase:hypothetical protein sll1682:hypothetical
							protein sll1682] [cl:alanine dehydrogenase:alanine dehydrogenase homology]
							[or:synechocystis sp.] [sr:ppc 6803,, pcc 6803] [sr:pcc 6803,] [db:pir]
21618765_f3_32	663	3266	192	63	127	2.00E−08	[ln:spnana] [ac:72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
21619006_f3_18	664	3267	423	140	498	9.80E−48	[ac:p95790] [gn:atpc] [or: streptococcus mutans ] [ec:3.6.1.34] [de:atp synthase epsilon
							chain,] [sp:p95790] [db:swissprot]
21640961_c3_125	665	3268	675	224	356	1.10E−32	[ac:h69278] [pn:glutamine abc transporter, permease protein (glnp) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
21641687_c1_34	666	3269	186	61	72	0.026	[ac:d69439] [pn:conserved hypothetical protein af1517] [or: archaeoglobus fulgidus]
							[db:pir]
2164187_f2_15	667	3270	654	217	109	7.90E−05	[ac:d43258] [pn:galactose-6-phosphate isomerase subunit lacb] [or: streptococcus
							mutans ] [db:pir]
21642135_f2_6	668	3271	267	88	332	3.80E−30	[ac:q00752] [gn:msmk] [or: streptococcus mutans ] [de:multiple sugar-binding transport
							atp-binding protein msmk] [sp:q00752] [db:swissprot]
21645262_c2_92	669	3272	342	113	221	2.20E−18	[ac:p54454] [gn:yqei] [or: bacillus subtilis ] [de:hypothetical 10.8 kd protein in arod-
							comer intergenic region] [sp:p54454] [db:swissprot]
21650055_c1_29	670	3273	1422	473	222	1.00E−35	[ac:c69862] [pn:conserved hypothetical protein ykra] [gn:ykra] [or: bacillus subtilis ]
							[db:pir]
2166092_c2_103	671	3274	714	237	642	5.40E−63	[ac:b69477] [pn:abc transporter, atp-binding protein homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
21675412_f1_2	672	3275	567	188	198	6.10E−16	[ac:d69868] [pn:conserved hypothetical protein ykvm] [gn:ykvm] [or: bacillus subtilis ]
							[db:pir]
21679837_f1_4	673	3276	831	276	509	6.70E−49	[ac:d69098] [pn:phosphate transporter permease pstc homolog] [gn:mth1730]
							[or: metanobacterium thermoautophicum ] [db:pir]
21743842_c2_45	674	3277	198	65	54	0.67	[ac:s43824] [pn:hypothetical protein] [or: escherichia coli ] [db:pir]
21745790_c3_41	675	3278	192	63	104	6.80E−05	[ac:p50360] [gn:y4hp] [or:rhizobium sp] [sr:ngr234,] [de:hypothetical 61.7 kd protein
							y4hp] [sp:p50360] [db:swissprot]
2187681_f3_32	676	3279	972	323	220	2.30E−16	[ac:p55340] [gn:ecsb:prst] [or: bacillus subtilis ] [de:protein ecsb] [sp:p55340]
							[db:swissprot]
21882936_c3_16	677	3280	207	68	59	0.0021	[ac:p02928] [gn:male] [or: escherichia coli ] [de:protein) (mmbp)] [sp:p02928]
							[db:swissprot]
21914057_c1_5	678	3281	720	239	738	3.60E−73	[ln:ldgappgk] [ac:aj000339] [pn:trisephosphate isomerase] [gn:tpi] [or: lactobacillus
							delbrueckii] [db:genpept-bct] [ec:5.3.1.1] [de: lactobacillus delbrueckii ygap, gap, pgk,
							tpi, and ycse genes.] [le:3599] [re:4357] [di:direct]
21914717_c1_84	679	3282	708	235	784	4.90E−78	[ac:p44865] [gn:gpma:hi0757] [or: haemophilus influenzae ] [ec:5.4.2.1] [de:(bpg-
							dependent pgam)] [sp:p44865] [db:swissprot]
21915942_c2_105	680	3283	861	286	781	1.00E−77	[ac:h69878] [pn:protein kinase homolog ylop] [gn:ylop] [or: bacillus subtilis ] [db:pir]
21953208_f2_22	681	3284	1089	362	180	9.10E−12	[ac:q47141:p76583:p77167] [gn:yfht] [or: escherichia coli ] [de:hypothetical
							transcriptional regulator in csie-glya intergenic region] [sp:q47141:p76583:p77167]
							[db:swissprot]
21954401_f2_26	682	3285	228	75	55	0.39	[ln:ae001156] [ac:ae001156:ae000783] [pn:xylulokinase (xylb)] [gn:bb0545]
							[or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct] [de: borrelia
							burgdorferi (section 42 of 70) of the complete genome.] [nt:similar to gp:1750125
21955188_f1_1	683	3286	216	71	58	0.34	[ln:af037218] [ac:af037218] [pn:unknown] [gn:u13] [or:human gerpesvirus 7]
							[db:genpept-vrl] [de:human herpesvirus 7 strain rk, complete genome.] [le:23742]
							[re:24038] [di:direct]
21958403_f3_60	684	3287	189	62	48	0.6	[ln:ac002396] [ac:ac002396] [gn:f3i6.10] [or: arabidopsis thaliana ] [se:thale cress]
							[db:genpept-pln] [de: arabidopsis thaliana chromosome i bac f3i6 genomic
							sequence, complete sequence.] [nt:hypothetical protein] [le:36763] [re:37944]
							[di:complement]
2196926_c3_29	685	3288	759	252	800	9.80E−80	[ac:37478] [gn:yycf] [or: bacillus subtilis ] [de:intergenic region] [sp:p37478]
							[db:swissprot]
22003537_f2_15	686	3289	1104	367	648	1.30E−63	[ac:q45539] [gn:csbb] [or: bacillus subtilis ] [de:csbb protein] [sp:q45539] [db:swissprot]
22031641_f1_5	687	3290	726	241	311	6.40E−28	[ln:d89963] [ac:d89963] [pn:negative regulatory protein of pho regulon] [gn:phou]
							[or: enterobacter cloacae ] [sr: enterobacter cloacae (strain:ifo3320) dna] [db:genpept-bct]
							[de: enterobacter cloacae psts, pstc, psta, pstb and phou genes, complete cds.] [nt:t
22031938_f1_1	688	3291	354	117	138	1.40E−09	[ac:p39044] [gn:x] [or: bacillus sphaericus ] [de:30s ribosomal protein s14 homolog]
							[sp:p39044] [db:swissprot]
22031952_f1_7	689	3292	1719	572	1712	2.20E−176	[ln:spdexcap] [ac:z47210] [pn:unknown] [gn:orf3] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: s.pneumoniae dexb, cap3a, cap3b and cap3c genes and orfs.]
							[nt:this reading frame is extended at its 3′ end by a] [le:9579] [re:10796] [di:direct]
22033311_f3_16	690	3293	447	148	179	6.30E−14	[ac:a69220] [pn:conserved hypothetical protein mth898] [gn:mth898]
							[or: methanobacterium thermoautotrophicum ] [db:pir]
22050166_f3_34	691	3294	270	89	64	0.19	[ln:mpmura] [ac:x99776] [pn:udp-n-acetylglucosamine] [gn:mura] [or: mycobacterium
							phlei ] [db:genpept-bct] [ec:2.5.1.7] [de: m.phlei mura gene, and rrnaf operon promoter
							region.] [le:<1] [re:339] [di:direct]
22051281_f1_5	692	3295	876	291	310	8.20E−28	[ac:e64128] [pn:lic-1 protein d] [gn:lice] [or: haemophilus influenzae ] [db:pir]
22062757_f1_1	693	3296	876	291	77	0.0022	[ac:p34859] [gn:nd41] [or: apis mellifera ] [sr:,honeybee] [ec:1.6.5.3] [de:nadh-
							ubiquinone oxidoreductase chain 41,] [sp:p34859] [db:swissprot]
22070285_c1_20	694	3297	237	78	60	0.0029	[ac:p20498] [gn:i11] [or:vaccinia virus] [sr:copenhagen,] [de:protein i1] [sp:p20498]
							[db:swissprot]
22110665_f1_12	695	3298	1174	392	632	6.20E−62	[ac:c69596] [pn:branched-chain amino acid transporter brab] [gn:barb] [or: bacillus
							subtilis] [db:pir]
22113576_c3_20	696	3299	675	224	101	0.01	[ac:q01608] [gn:spe-4:zk524.1] [or: caenorhabditis elegans ] [de:integral membrane
							protein spe-4] [sp:q01608] [db:swissprot]
22147543_c3_97	697	3300	696	231	100	0.0011	[ln:af013216] [ac:af013216:u81372] [pn:unknown] [or: myxococcus xanthus ]
							[db:genpept-bct] [de: myxococcus xanthus dog (dog), isocitrate lyase (icl), mls (mls),ufo
							(ufo), fumarate hydratase (fhy), and proteosome major subunit(clpp) genes, complete
							cds; and a
2219375_c3_39	698	3301	498	165	100	0.0025	[ln:tipis866a] [ac:m25805] [pn:unknown protein] [or:plasmid ti] [sr:plasmid ti dna]
							[db:genpept-bct] [de: a.tumefaciens ti plasmid is866 insertion sequence in ta-iaah
							auxinsynthesis gene dna.] [nt:orf1, putative] [le:1427] [re:2395] [di:direct]
2220057_c3_64	699	3302	576	191	106	0.0012	[ac:p46330] [gn:yxat:e3a] [or: bacillus subtilis ] [de:hypothetical 44.3 kd protein in gntr-
							htpg intergenic region] [sp:46330] [db:swissprot]
22265702_f3_88	700	3303	228	75	55	0.58	[ac:s27893] [pn:119jr protein] [or:african swine fever virus:asfv] [db:pir]
22268927_f1_18	701	3304	198	65	290	1.10E−25	[ln:spdnagcpo] [ac:y11463] [gn:rpod] [or: strepotococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae dnag, rpod, cpoa genes and orf3 and orf5.] [le:566]
							[re:1675] [di:direct]
2227302_c3_44	702	3305	1035	344	1533	2.10E−157	[ac:s47979:s42857] [pn:alib protein precursor] [gn:alib] [or: streptococcus pneumoniae ]
							[db:pir]
2227318_f1_1	703	3306	330	109	283	6.00E−25	[ac:69998] [pn:thioredoxin h1 homolog ytpp] [gn:ytpp] [or: bacillus subtilis ] [db:pir]
22275187_f3_33	704	3307	513	170	482	4.90E−46	[ln:llaj109] [ac:aj000109] [pn:gluthatione peroxidase] [gn:gpo] [or: lactococcus lactis ]
							[db:genpept-bct] [de: lactococcus lactis carb and gpo genes.] [le:163] [re:636] [diLdirect]
2228155_c3_22	705	3308	996	331	71	0.13	[ac:p28319] [gn:cwp1:yk1096w:yk1443:yju] [or: saccharomyces cerevisiae ] [sr:,baker's
							yeast] [de:cell wall protein cwp1 precursor] [sp:p28319] [db:swissprot]
22297253_f1_7	706	3309	891	296	653	3.70E−64	[ac:p37544] [gn:yabc] [or: bacillus subtilis ] [de:hypothetical 33.0 kd protein in xpac-
							abrb intergenic region] [sp:37544] [db:swissprot]
2229837_c1_26	707	3310	843	280	450	1.20E−42	[ac:a70039] [pn:abc transporter (atp-binding protein) homolog yvfr] [gn:yvfr]
							[or: bacillus subtilis ] [db:pir]
22304756_c2_26	708	3311	327	108	135	2.90E−09	[ac:b47342] [pn:transposase homolog, lct 5′-region] [or: lactococcus lactis subsp. lactis]
							[db:pir]
22304758_c1_27	709	3312	195	64	53	0.21	[ln:atac002505] [ac:ac002505:ac003008] [pn:putative pectinesterase] [gn:t9j22.11]
							[or: arabidopsis thaliana ] [sr:thale cress] [db:genpept-pln] [de: arabidopsis thaliana
							chromosome ii bac t9j22 genomic sequence, complete sequence.] [le:33072:34384]
							[re:34026:
22305342_c1_152	710	3313	519	172	66	0.97	[ac:jc5482] [pn:hypothetical 13.2k protein] [or: staphylococcus xylosus ] [db:pir]
22345642_f2_16	711	3314	399	132	56	0.69	[ln:mmu91573] [ac:u91573] [pn:glucose-6-phosphatase] [gn:g6pase] [or: mus musculus ]
							[sr:house mouse] [db:genpept-rod] [de: mus musculus glucose-6-phosphatase (g6pase)
							gene, exon 1 andpartial cds.] [le:834] [re:
22347125_c3_62	712	3315	369	122	391	2.10E−26	[ln:d64071] [ac:d64071] [pn:putative protein of unknown function] [or: actinobacillus
							actinomycetemcomitans ] [sr: actinobacillus actinomycetemcomitans (strain:y4) dna]
							[db:genpept-bct] [de: actinobacillus actinomycetemcomitans dna for ribosomal
							proteins,part
22350093_f2_15	713	3316	315	104	402	1.50E−37	[ac:p45596] [gn:ptsh] [or: streptococcus mutans ] [de:phosphocarrier protein hpr
							(histidine-containing protein)] [sp:p45596] [db:swissprot]
2235806_c1_49	714	3317	249	82	81	0.0015	[ln:cbanb] [ac:x92973] [gn:bont] [or: clostridium botulinum a] [db:genpept-bct]
							[de: c.botulinum a ntnh and bont genes.] [le:3626] [re:
22375025_f3_29	715	3318	987	328	451	9.40E−43	[ac:a61607] [pn:probable hemolysin precursor] [or: streptococcus agalactiae ] [db:pir]
22386526_c2_57	716	3319	561	186	184	1.90E−14	[ln:cef46b3] [ac:z81540] [pn:f46b3.o] [or: caenorhabditis elegans] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid f46b3, complete sequence.] [nt:protein predicted
							using genefinder, preliminary] [le:28586:28938] [re:28597:29456] [di:directjoin]
22398381_f3_47	717	3320	435	144	62	0.76	[ln:beumtrps13] [ac:d73380] [pn:ribosomal protein s13] [gn:rps13] [or:mitochondrion
							beta vulgaris] [sr:beta vulgaris (strain:tk81-ms) leaf mitochondrion dna] [db:genpept-
							pln] [de:sugar beet mitochondrial dna for ribosomal protein s13, completeand partial
22400312_f3_8	718	3321	575	192	354	1.80E−32	[ac:p39779] [gn:cody] [or: bacillus subtilis ] [de:cody protein] [sp:p39779]
							[db:swissprot]
22444052_c1_51	719	3322	576	191	400	2.40E−37	[ac:d69989] [pn:hypothetical protein ytcg] [gn:ytcg] [or: bacillus subtilis ] [db:pir]
22455301_c1_16	720	3323	2133	710	2281	1.10E−236	[ln:bovclpab] [ac:134677] [pn:clp-like atp-dependent protease binding subunit] [or:bos
							taurus] [sr:bos taurus calf thymus cdna to mrna] [db:genpept-mam] [de:bovine putative
							clp-like atp-dependent protease binding subunit(clpa/clpb) mrna, partial cds.] [nt
22457527_f2_17	721	3324	366	121	55	0.7	[ln:aau87543] [ac:u87543] [pn:steroid hormone receptor homolog] [gn:aahr3-1]
							[or: aedes aegypti ] [sr:yellow fever mosquito] [db:genpept-inv] [de: aedes aegypti steroid
							hormone receptor homolog (aahr3-1) gene,partial cds, and lian-aa1 retrotransposon
							protein
22460040_c1_28	722	3325	525	174	107	0.0018	[ln:mmu67916] [ac:u67916] [pn:dentin sialophosphoprotein precursor] [gn:dspp]
							[or: mus musculus ] [sr:house mouse] [db:genpept] [de: mus musculus dentin
							sialophosphoprotein precursor (dspp) mrna,complete cds.] [nt:encodes dentin
							sialoprotein, dentin phosphop
22460327_f2_17	723	3326	708	235	648	1.30E−63	[ac:f69676] [pn:two-component response regulator involved in phosphate regulat phop]
							[gn:phop] [or: bacillus subtilis ] [db:pir]
22460451_f3_5	724	3327	1245	414	311	6.40E−28	[ac:p54535] [gn:yqix] [or: bacillus subtilis ] [de:intergenic region precursor] [sp:p54535]
							[db:swissprot]
22462812_c1_36	725	3328	621	206	94	0.015	[ac:q09202] [gn:ah6.3] [or: caenorhabditis elegans ] [de:hypothetical 25.9 kd protein
							ah6.3 in chromosome ii] [sp:q09202] [db:swissprot]
22469576_c1_23	726	3329	477	158	57	0.72	[ac:b70043] [pn:hypothetical protein yvkn] [gn:yvkn] [or: bacillus subtilis ] [db:pir]
22475053_c1_41	727	3330	261	86	109	1.60E−06	[ac:a69271] [pn:hypothetical protein af0169] [or: archaeoglobus fulgidus ] [db:pir]
22478212_c1_31	728	3331	984	327	592	1.10E−57	[ac:s77512] [pn:hypothetical protein] [cl:malk protein homology] [or:synechocystis sp.]
							[sr:pcc 6803,, pcc 6803] [sr:pcc 6803,] [db:pir]
22536061_f3_9	729	3332	567	188	983	4.00E−99	[ac:p38O34] [or: streptococcus pneumoniae] [de:hypothetical 23.1 kd protein in pona
							5'region] [sp:p38034] [db:swissprot]
22536532_c1_168	730	3333	375	124	53	0.89	[ln:af003349] [ac:af003349] [pn:npc1] [gn:npc1] [or: mus musculus ] [sr:house mouse]
							[db:genpept-rod] [de: mus musculus npc1 gene, partial cds and wild type intron
							containingmalr insertion site.] [le:<1:2116] [re:139:
22542163_f3_13	731	3334	405	134	67	0.059	[ac:69441] [pn:glutaredoxin (grx-1) homolog] [or: archaeoglobus fulgidus ] [db:pir]
22551911_f1_1	732	3335	840	279	866	9.90E−87	[ac:h69789] [pn:1-iditol 2-dehydrogenase homolog ydjl] [gn:ydjl] [or: bacillus subtilis ]
22665883_c3_40	733	3336	210	69	51	0.27	[ln:rumcettul] [ac:104563] [pn:cellulase] [gn:cela] [fn:endo-beta-1,4 glucanase]
							[or: ruminococcus albus ] [db:genpept-bct] [de: ruminococcus albus cellulase (ceta) gene,
							complete cds.] [le:404] [re:1639] [di:direct]
22675212_c3_98	734	3337	981	326	464	3.90E−44	[ac:d69670] [pn:glycine betaine/carnitine/choline abc transporter (membrane p) opucb]
							[gn:opucb] [or: bacillus subtilis ] [db:pir]
22689010_c3_90	735	3338	450	149	166	3.20E−12	[ac:p49330] [gn:rgg] [or: streptococcus gordonii challis] [de:rgg protein] [sp:p49330]
							[db:swissprot]
22745637_c2_36	736	3339	588	196	426	4.20E−40	[ac:p12040] [gn:purn] [or: bacillus subtilis ] [ec:2.1.2.2] [de:transformylase) (5'-
							phosphoribosylglycinamide transformylase)] [sp:p12040] [db:swissprot]
22792168_f2_4	737	3340	2838	945	3452	0	[ac:f69729] [pn:excinuclease abc (subunit a) uvra] [n:uvra] [or: bacillus subtilis]
22792963_c2_75	738	3341	555	185	173	2.70E−13	[ac:c65048] [pn:hypothetical protein b2682] [or: escherichia coli ] [db:pir]
22832637_f3_6	739	3342	1608	535	747	4.00E−74	[ac:g69992] [pn:spore cortex protein homolog ytgp] [gn:ytgp] [or: bacillus subtilis ]
							[db:pir]
22837811_c3_234	740	3343	336	111	83	0.00093	[ln:cer11d1] [ac:z75547] [pn:r11d1.8] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid r11d1, complete sequence.] [nt:protein predicted
							using genefinder; similarity to] [le:25319:25544] [re:25497:25745] [di:complementjoin]
22845183_c1_13	741	3344	660	219	787	2.30E−78	[ln:spu11799] [ac:u11799] [or: streptococcus pyogenes ] [db:genepept-bct]
							[de: streptococcus pyogenes insertion sequence is1239 putativetransposase gene,
							complete cds.] [nt:putative transposase] [le:379] [re:1359] [di:direct]
22845183_f3_17	742	3345	660	219	788	1.80E−78	[ln:spu11799] [ac:u11799] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes insertion sequence is1239 putativetransposase gene,
							complete cds.] [nt:putative transposase] [le:379] [re:1359] [di:direct]
22848265_c1_40	743	3346	393	130	338	8.90E−31	[ac:p07842] [gn:rpsi] [or: bacillus stearothermophilus ] [de:30s ribosomal protein s9
							(bs10)] [sp:p07842] [db:swissprot]
22850201_f1_1	744	3347	240	79	117	1.40E−06	[ac:p55454] [gn:y4fp] [or:rhizobium sp] [sr:ngr234,] [de:probable abc transporter
							periplasmic binding protein y4fp precursor] [sp:p55454] [db:swissprot]
22851577_f1_8	745	3348	876	291	551	2.40E−53	[ac:q08291] [or: bacillus stearothermophilus ] [ec:2.5.1.10] [de:(fpp synthase)]
							[sp:q08291] [db:swissprot]
22852217_c3_32	746	3349	1281	426	775	4.40E−77	[ac:p48795] [gn:pyrc] [or: lactobacillus leichmannii ] [ec:3.5.2.3] [de:dihydroorotase,
							(dhoase)] [sp:p48795] [db:swissprot]
22855342_c3_47	747	3350	834	277	443	6.60E−42	[ln:ecouw67] [ac:u18997] [or: escherichia coli ] [db:genpept-bct] [de: escherichia coli k-
							12 chromosomal region from 67.4 to 76.0 minutes.] [nt:orf_o290; geneplot suggests
							frameshift linking to] [le:66149] [re:67021] [di:direct]
22867337_f2_11	748	3351	1548	515	1623	6.00E−167	[ac:d70009] [pn:abc transporter (atp-binding protein) homolog yufo] [gn:yufo]
							[or: bacillus subtilis ] [db:pir]
22898576_c1_13	749	3352	348	115	59	0.3	[ac:i40760:s47318] [pn:hypothetical protein 3] [or: campylobacter jejuni ] [db:pir]
22899142_f3_21	750	3353	1434	477	1351	4.00E−138	[ac:a69581] [pn:acetyl-coa carboxylase (biotin carboxylase subunit) accc] [gn:accc]
							[or: bacillus subtilis ] [db:pir]
22902200_f2_24	751	3354	1464	487	1283	6.40E−131	[ac:q02001] [gn:trpe] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:4.1.3.27] [de:anthranilate synthase component i,] [sp:q02001] [db:swissprot]
22902311_c2_193	752	3355	354	117	89	0.013	[ac:p08799] [gn:mhca] [or: dictyostelium discoideum ] [sr:,slime mold] [de:myosin ii
							heavy chain, non muscle] [sp:p08799] [db:swissprot]
22927187_c2_56	753	3356	714	237	145	1.70E−08	[ac:c69159] [pn:conserved hypothetical protein mth453] [gn:mth453]
							[or: methanobacterium thermautotrophicum ] [db:pir]
22933438_f2_6	754	3357	942	313	1564	1.10E−160	[ac:p18794] [gn:amid] [or: streptococcus pneumoniae ] [de:oligopeptide transport
							permease protein amid] [sp:p18794] [db:swissprot]
22938463_f2_11	755	3358	390	129	73	0.011	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
22948387_f1_10	756	3359	966	321	1579	2.80E−162	[ln:spu53509] [ac:u53509] [pn:surface adhesin a precursor] [gn:psaa] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae surface adhesin a
							precursor (psaa) gene,complete cds.] [nt:fimbrial adhesin] [le:189] [re:1118] [di:direct]
23438577_f3_10	757	3360	741	246	306	2.40E−26	[ac:e69602] [pn:late competence operon required for dna binding and uptake comec]
							[gn:comec] [or: bacillus subtilis ] [db:pir]
23442262_f3_22	758	3361	903	300	702	2.40E−69	[ac:q54776] [gn:accd] [or:synechococcus sp] [sr:pcc 7942,anacystis nidulans r2]
							[ec:6.4.1.2] [de:(ec 6.4.1.2)] [sp:q54776] [db:swissprot]
23442888_c3_139	759	3362	228	75	59	0.011	[ac:a64678] [pn:hypothetical protein hp1265] [or: helicobacter pylori ] [db:pir]
23447177_f3_5	760	3363	618	205	246	5.00E−21	[ac:f69900] [pn:transposon-related protein homolog yoca] [gn:yoca] [or: bacillus
							subtilis ] [db:pir]
2345336_f1_2	761	3364	357	118	172	3.20E−12	[ln:ab007465] [ac:ab007465] [pn:dna gyrase subunit a] [gn:gyra coding region encoding
							for dna gyrase subunit] [or: streptococcus thermophilus ] [sr: streptococcus thermophilus
							(strain:m-192) dna] [db:genpept-bct] [de: streptococcus thermophilus gene for dna g
2345442_c3_22	762	3365	609	202	113	0.00034	[ac:s76167] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803,, pcc 6803]
							[sr:pcc 6803,] [db:pir]
23470327_c3_51	763	3366	240	79	152	4.60E−11	[ln:soorfs] [ac:z79691] [gn:yorfe] [fn:putative transcription regulator] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: s.pneumoniae yorf[a,b,c,d,e], ftsl, pbpx and regr
							genes.] [le:2388] [re:2582] [di:complement]
234705_f2_3	764	3367	222	73	58	0.00024	[ln:af017754] [ac:af017754] [pn:resistance protein candidate] [gn:rgc4a] [or: lactuca
							sativa ] [sr:garden lettuce] [db:genpept-pln] [de: lactuca sativa resistance protein
							candidate (rgc4a) gene, partialcds.] [le:<1] [re:
23470967_f2_23	765	3368	1641	546	322	1.30E−26	[ln:ae001139] [ac:ae001139:ae000783] [pn:oligopeptide abc transporter, periplasmic]	-
							[gn:bb0328] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 25 of 70) of the complete genome.] [nt:similar to gp:
23472652_f1_11	766	3369	228	75	59	0.21	[ln:celc10a4] [ac:u23454] [gn:c10a4.1] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c10a4.]
							[nt:similar to hobo element transposase hf11 (d.] [le:28726:29274:29410:30097] [re:
23476702_f3_45	767	3370	888	295	899	3.20E−90	[ac:q45480] [gn:ylyb] [or: bacillus subtilis ] [de:hypothetical 33.7 kd protein in lsp-pyrr
							intergenic region (orf-x)] [sp:q45480] [db:swissprot]
23478375_f3_59	768	3371	1347	448	1099	2.00E−111	[ac:q06752] [gn:cyss:spna] [or: bacillus subtilis ] [ec:6.1.1.16] [de:(cysrs)] [sp:q06752]
							[db:swissprot]
23478382_c1_18	769	3372	474	157	444	5.20E−42	[ac:p37455] [gn:ssb] [or: bacillus subtilis ] [de:single-strand binding protein (ssb) (helix-
							destabilizing protein)] [sp:p37455] [db:swissprot]
23478426_f2_5	770	3373	1572	523	1585	6.40E−163	[ac:p12048] [gn:purh:purhj] [or: bacillus subtilis ] [ec:2.1.2.3:3.5.4.10] [de:(inosinicase)
							(imp synthetase) (atic)] [sp:p12048] [db:swissprot]
23478452_f2_25	771	3374	828	275	389	3.50E−36	[ac:f64819] [pn:hypothetical protein b0822] [or: escherichia coli ] [db:pir]
23480333_f1_2	772	3375	2256	751	221	1.30E−l4	[ln:ecu23723] [ac:u23723] [fn:unknown] [or: escherichia coli ] [db:genpept-bct]
							[de: escherichia coli orf300 and orf732 genes, complete cds.] [nt:orf732] [le:1672]
							[re:3870] [di:direct]
23484787_f3_7	773	3376	321	106	54	0.67	[lh:bpjt5] [ac:x97994] [pn:1-aminocyclopropane-1-carboxylate oxidase] [gn:acoh5]
							[or: betula pendula ] [sr:european white birch] [db:genpept-pln] [de: b.pendula mrna for 1-
							aminocyclopropane-1-carboxylate oxidasehomolog, acoh5.] [le:<1] [re:175] [di:direct]
23485012_f2_10	774	3377	2370	789	1124	4.50E−114	[ac:o08365] [gn:mtcy21cl2.02] [or: mycobacterium tuberculosis ] [ec:3.6.1.-]
							[de:putative cation-transporting atpase cy21c12.02,] [sp:o08365] [db:swissprot)
23490630_c1_41	775	3378	471	56	76	0.0082	[ac:p23939] [or:bacillus amyloliquefaciens] [de:bamhi control element] [sp:p23939]
							[db:swissprot]
23490882_f1_15	776	3379	570	189	221	2.20E−18	[ln:u91581] [ac:u91581:u04057] [fn:unknown] [or: lactococcus lactis lactis] [db:genpept-
							bct] [de: lactococcus lactis lactis lacticin 481 operon, preprolacticin 481(lcta), lctm
							(lctm), lctt (lctt), lctf (lctf), lcte (lcte), andlctg (lctg) genes, complete cds
23490882_f1_17	777	3380	570	189	221	2.20E−18	[ln:u91581] [ac:u91581:u04057) [fn:unknown] [or: lactococcus lactis lactis] [db:genpept-
							bct] [de: lactococcus lactis lactis lacticin 481 operon, preprolacticin 481(lcta), lctm
							(lctm), lctt (lctt), lctf (lctf), lcte (lcte), andlctg (lctg) genes, complete cds
23490882_f1_3	778	3381	570	189	221	2.20E−18	[ln:u91581] [ac:u91581:u04057] [fn:unknown] [or: lactococcus lactis lactis] [db:genpept-
							bct] [de: lactococcus lactis lactis lacticin 481 operon, preprolacticin 481(lcta), lctm
							(lctm), lctt (lctt), lctf (lctf), lcte (lcte), andlctg (lctg) genes, complete cds
23491555_f2_1	779	3382	2061	687	2242	1.50E−232	[ac:p39814] [gn:topa:topi] [or: bacillus subtilis ] [ec:5.99.1.2] [dc:(untwisting enzyme)
							(swivelase)] [sp:p39814] [db:swissprot]
23495467_c2_81	780	3383	645	214	342	3.30E−31	[ln:scu96166] [ac:u96166) [pn:atp-binding cassette protein] [gn:tptc] [or: streptococcus
							crista ] [db:genpept-bct] [de: streptococcus crista atp-binding cassette lipoprotein
							(tpta),atp-binding cassette transporter-like protein (tptb), atp-bindingcassette pro
23496000_c2_94	781	3384	600	199	283	6.00E−25	[ac:h69850] [pn:mutator mutt protein homolog yjhb] [gn:yjhb] [or: bacillus subtilis ]
							[db:pir]
23517127_c1_140	782	3385	366	121	160	9.70E−11	[in:cabtran] [ac:147121] [pn:atp-dependent translocator] [gn:cbnt] [or: carnobacterium
							piscicola ] [db:genpept-bct] [de: carnobacterium piscicola transposase, bacteriocin,
							histidineprotein kinase, atp dependent transloactor, accessory protein, and carnobacter
23518758_c3_87	783	3386	231	76	64	0.092	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
23522530_c1_41	784	3387	393	130	80	0.0019	[ac:a69764] [pn:conserved hypothetical protein ycne) [gn:ycne] [or: bacillus subtilis ]
							[db:pir]
23522577_f1_1	785	3388	1488	495	1240	2.30E−126	[ac:p54547] [gn:zwf] [or: bacillus subtilis ] [ec:1.1.1.49] [de:glucose-6-phosphate 1-
							dehydrogenase, (g6pd)] [sp:p54547] [db:swissprot]
235250_f2_6	786	3389	1065	354	684	1.90E−67	[ac:d69856] [pn:conserved hypothetical protein ykgb] [gn:ykgb] [or: bacillus subtilis ]
							[db:pir]
23525261_f2_7	787	3390	1086	361	1305	3.00E−133	[ln:af014460] [ac:af014460] [pn:pepq] [gn:pepq] [fn:hydrolysis of leu-pro)
							[or: streptococcus mutans ] [db:genpept-bct] [de: streptococcus mutans pepq and ccpa
							gencs, complete cds.] [nt:dipeptidase] [le:53] [re:1132] [di:complement)
23525327_c2_19	788	3391	678	225	141	2.30E−07	[ac:s76167] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803,, pcc 6803]
							[sr:pcc 6803,] [db:pir]
23526933_c1_42	789	3392	345	114	110	1.30E−06	[ac:s75475] [pn:transposase:protein slr1524:protein slr1524] [or:synechocystis sp.]
							[sr:pcc 6803,, pcc 6803] [sr:pcc 6803,] [db:pir]
23540831_f3_14	790	3393	825	274	796	2.60E−79	[ac:58418] [gn:pstb:mj1012] [or: methanococcus jannaschii] [de:probable phosphate
							transport atp-binding protein pstb] [sp:q58518] [db:swissprot]
23540902_f3_17	791	3394	966	321	423	8.70E−40	[ac:p30363] [gn:ansa] [or: bacillus licheniformis ] [ec:3.5.1.1] [de:1-asparaginase,(1-
							asparagine amidohydrolase)] [sp:p30363] [db:swissprot]
23541687_f1_2	792	3395	1296	431	1353	2.50E−138	[ln:stis1193] [ac:y13713] [pn:trannsposase] [or: streptococcus thermophilus ] [db:genpept-
							bct] [de: streptococcus thermophilus insertion sequence is1193 transposasegene.]
							[le:130] [re:1386] [di:direct]
23551282_f2_6	793	3396	510	169	285	3.70E−25	[ac:p26380] [gn:leve:sac1] [or: bacillus subtilis ] [ec:2.7.1.69] [de:(ec 2.7.1.69) (p18)]
							[sp:p2630] [db:swissprot]
23556563_f2_9	794	3397	924	307	674	2.20E−66	[ac:h69620] [pn:malonyl coa-acyl carrier protein transacylase fabd] [gn:fabd]
							[or: bacillus subtilis ] [db:pir]
23572150_f1_9	795	3398	480	159	322	4.40E−29	[ac:p43906] [gn:arok] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.7.1.71] [de:shikimate kinase, (sk)] [sp:p43906] [db:swissprot]
23573883_f2_15	796	3399	477	158	561	2.10E−54	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1).dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
23595027_c1_72	797	3400	918	305	374	1.40E−34	[ln:d87026] [ac:d87026:s28136] [pn:membrane protein] [or: bacillus
							stearothermophilus ] [sr: bacillus stearothermophilus (strain:trbe14) dna] [db:genpept-
							bct] [de: bacillus stearothermophilus dna for glycogen operon, complete cds.] [nt:the orf
							is similar to t
23597692_c3_23	798	3401	351	116	552	1.90E−53	[ln:strcomaa] [ac:m36180:1159190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
23598187_c1_14	799	3402	2040	679	3359	0	[ac:q54986] [gn:uvrb:uvs402] [or: streptococcus pneumoniae ] [de:excinuclease abc
							subunit b] [sp:q54986] [db:swisprot]
23598752_c1_22	800	3403	279	92	181	3.80E−14	[ac:p37543] [gn:yabb] [or: bacillus subtilis ] [de:hypothetical 28.3 kd protein in xpac-
							abrb intergenic region] [sp:p37543] [db:swissprot]
23598752_f1_1	801	3404	1599	532	200	2.90E−15	[ac:e69827] [pn:glycerophosphodiester phosphodiesterase homolog yhdw] [gn:yhdw]
							[or: bacillus subtilis ] [db:pir]
23600636_f3_25	802	3405	726	241	231	1.90E−19	[ln:d90848] [ac:d90848:ab001340] [pn:pts system, galacitol-specific iic component]
							[gn:gatc] [or: escherichia coli ] [sr: escherichia coli (strain:k12) dna, clone_lib:kohara
							lambda minise] [db:genpept-bct] [de: e.coli genomic dna, kohara clone #359(46.8-47.2
23601553_f1_11	803	3406	438	145	298	1.50E−26	[ac:p19079] [gn:cdd] [or: bacillus subtilis ] [ec:3.5.4.5] [de:cytidine deaminase, (cytidine
							aminohydrolase) (cda)] [sp:p19079] [db:swissprot]
23603437_c3_29	804	3407	2283	760	880	3.30E−88	[ln:btu67061] [ac:u67061] [pn:pullulanase] [gn:puli] [or:bacteroides thetaiotamicron]
							[db:geneppt-bct] [de:bacteroides thetaiotamicron pullulanase (puli) gene, complete
							cds.] [le:402] [re:2408] [di:direct]
23605062_c3_57	805	3408	456	152	174	6.50E−12	[ac:d69617] [pn:dna polymerase iii (alpha subunit) dnae] [gn:dnae] [or: bacillus subtilis]
							[db:pir]
23609628_c1_53	806	3409	615	204	90	0.092	[ac:h64446] [pn:hypothetical protein homolog mj1178] [or: methanococcus jannaschii ]
							[db:pir] [mp:rev1117459-1116404]
23610958_f1_13	807	3410	972	323	424	6.80E−40	[ac:p29823] [gn:lacf] [or:agrobacterium radiobacter] [de:lactose transport system
							permease protein lacf] [sp:p29823] [db:swissprot]
23611517_c1_51	808	3411	234	77	156	1.70E−11	[ln:ssu34305] [ac:u34305] [or: shigella sonnei ] [sr: shigella sonnei strain=53g]
							[db:genpept-bct] [de: shigella sonnei form i operon orf protein genes, complete
							cds,insertion sequence is630 protein gene, complete cds.] [nt:orf8; method: conceptual
							translatio
23620638_f1_6	809	3412	726	241	680	5.10E−67	[ln:lllvsfpep] [ac:x99710] [pn:methyltransferase] [or: lactococcus lactis ] [db:genpept-
							bct] [de: l.lactis orf, genes homologous to vsf-1 and pep2 and gene encodingprotein
							homologous to methyltransferase.] [nt: homology with (d64004)] [le:3803] [re:4486] [di
23632827_c3_205	810	3413	273	90	73	0.025	[ac:b64505] [pn:hypothetical protein mj1644] [or: methanococcus jannaschii ] [db:pir]
							[mp:for1627138-1627671]
23632962_f1_6	811	3414	654	217	330	6.30E−30	[ac:d69433] [pn:abc transporter, atp-binding protein homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
23633443_f1_2	812	3415	1062	353	689	5.70E−68	[ln:ae001165] [ac:ae001165:ae000783] [pn:spermidine/putrescine abc transporter,]
							[gn:bb0642] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 51 of 70) of the complete genome.] [nt:similar to
							gb:m64
23633568_c3_36	813	3416	291	96	69	0.052	[ln:spac2c4] [ac:z99259] [pn:small nuclear ribonuclear protein] [gn:spac2c4.03c]
							[or: schizosaccharomyces pombe ] [sr:fission yeast] [db:genpept-pln] [de: s.pombe
							chromosome i cosmid c2c4.] [nt:spac2c4.03c, small nuclear ribonucleoprotein;]
							[le:3105:3295:346
23634632_f3_17	814	3417	432	143	126	2.60E−08	[ac:p17162] [gn:ptsn] [or: klebsiella pneumoniae ] [ec:2.7.1.69] [de:(phosphotransferase
							enzyme ii, a component)] [sp:p17162] [db:swissprot]
23624687_f2_12	815	3418	1443	480	694	1.70E−68	[ac:g69354] [pn:trk potassium uptake system protein (trkh) homolog] [or: archaeoglobus
							fulgidus] [db:pir]
23634691_f2_7	816	3419	414	138	282	7.60E−25	[ac:p45080] [gn:nrdg:hi1155] [or: haemophilus influenzae ] [ec:1.97.1.-] [de:(ec 1.97.1.-
							)] [sp:p45080] [db:swissprot]
23640750_c2_32	817	3420	771	256	526	1.10E−50	[ac:f69726] [pn:pseudouridylate synthase i trua] [gn:trua] [or: bacillus subtilis] [db:pir]
23640783_c2_57	818	3421	183	60	109	1.60E−06	[ac:p55614] [gn:y4pe,y4sa] [or:rhizobium sp] [sr:ngr234,] [de:hypothetical 15.5 kd
							protein y4pe/y4sa] [sp:p55614] [db:swissprot]
23641630_f1_2	819	3422	2001	666	2177	1.20E−225	[ac:p18255:p06570] [gn:thrs:thrsv] [or: bacillus subtilis ] [ec:6.1.1.3] [de:(thrrs)]
							[sp:p18255:p06570] [db:swissprot]
23641684_c2_38	820	3423	719	239	1193	2.20E−121	[ac:s47979:s42857] [pn:alib protein precursor] [gn:alib] [or: streptococcus pneumoniae]
							[db:pir]
23642512_f1_1	821	3424	1734	577	987	1.50E−99	[ac:q05506] [gn:ydr341c:d9651.10] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[ec:6.1.1.19] [de:-trna ligase) (argrs)] [sp:q05506] [db:swissprot]
23642687_f3_11	822	3425	282	93	366	9.60E−34	[ac:p35593] [gn:msra:exp3] [or: streptococcus pneumoniae ] [de:(exported protein 3)]
							[sp:p35593] [db:swissprot]
23647577_c1_27	823	3426	597	198			[ln:af030360] [ac:af030360] [pn:dtdp-4-keto-6-deoxyglucose-3,5-epimerase] [gn:cpsm]
							[or: streptococcus pneumoniae ] [db:genepept-bct] [de: streptococcus pneumonia strain sp-
							496 glucose-1-phosphate thymidyltransferase (cpsl) gene, partial cds; andtdp-4-keto-
23648388_f3_33	824	3427	189	62	55	0.47	[ln:ddu61403] [ac:u61403] [pn:pn:prla] [gn:prla] [or: dlctyostelium discodieum]
							[db:genpept-inv] [de: dioctyostelium discoideum prla (prla) mrna, partial cds.]
							[nt:proliferation-associated protein; similar to] [le:<1] [re:1142] [di:direct]
23651658_c3_5	825	3428	573	191	967	2.00E−97	[ac:p77432:q99894] [gn:ydev] [or: escherichia coli ] [de:hypothetical sugar kinase in
							hipb-uxab intergenic region] [sp:p77432:q99894] [db:swissprot]
23671912_f3_7	826	3429	720	239	477	1.70E−45	[ac:p24247] [gn:pfs] [or: escherichia coli ] [de:pfs protein (p46)] [sp:p24247]
							[db:swissprot]
23673561_c3_87	827	3430	252	83	147	1.20E−09	[ac:p37469] [dn:dnac] [or: bacillus subtilis ] [ec:3.6.1.-] [de:replicative dna helicase,]
							[sp:p37469] [db:swissprot]
23676288_c2_42	828	3431	1404	467	1095	5.40E−111	[ac:p54475] [gn:yqfr] [or: bacillus subtilis ] [de:probable rna helicase in ccca-soda
							intergenic region] [sp:p54475] [db:swissprot]
23676443_c3_229	829	3432	918	305	87	0.052	[ln:ae001158] [ac:ae001158:ae000783] [pn:abc transporter, atp-binding protein]
							[gn:bb0573] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 44 of 70) of the complete genome.] [nt:similar to
							sp:p4690
23679692_f3_10	830	3433	2058	685	1450	1.30E−148	[ac:p54381] [gn:glys] [or: bacillus subtilis ] [ec:6.1.1.14] [de:beta chain) (glyrs)]
							[sp:p54381] [db:swissprot]
23688782_c2_114	831	3434	1074	357	532	2.50E−51	[ln:shu75349] [ac:u75349] [pn:putative permease shie] [or:serpulina hydodysenteriae]
							[db:genpept-bct] [de:serpulina hydodysenteriae shi operon, periplasmic-iron-
							bindingproteins shia and shib, putative abc transporter shic, and putativepermeases shid
							and shi
23704058_f2_9	832	3435	366	121	407	4.30E−38	[ac:b69701] [pn:ribosomal protein s19 (bs19) rpss] [gn:rpss] [or: bacillus subtilis ]
							[db:pir]
23709388_f1_2	833	3436	343	115	87	0.00035	[ac:b54545] [pn:hypothetical protein] [or: lactococcus lactis subsp. lactis] [db:pir]
23713562_c3_23	834	3437	483	160	164	2.40E−12	[ac:70031] [pn:mutator mutt protein homolog yvci] [gn:jyci] [or: bacillus subtilis ]
							[db:pir]
23713876_f2_10	835	3438	192	63	136	2.00E−08	[ac:q00565] [gn:lcnd] [or: lactococcus lactis : lactococcus lactis ]
							[sr;,subsplactis: streptococcus lactis :subspcremoris: streptococcus cremoris ]
							[de:lactococcin a secretion protein lend] [sp:q00565] [db:swissprot]
23725302_f1_10	836	3439	288	95	74	0.063	[ln:scyb1028c] [ac:z35789:y13134] [or: saccharomyces cerevisiae ] [sr:baker'yeast]
							[db:genpept-pln] [de: s.cerevisiae chromosome ii reading frame orfyb1028c.] [nt:orf
							yb1029w] [le:<1] [re:1077] [di:direct]
23728550_f2_22	838	3441	1326	441	776	3.40E−77	[ac:q45400] [gn:celb] [or: bacillus stearothermophilus ] [de:permease iic component)
							(phosphotransferase enzyme ii, c component)] [sp:q45400] [db:swissprot]
23730000_f2_15	839	3442	525	174	57	0.79	[ac:e57256] [pn:hypothetical protein (leua 5′ region)] [or: haemophilus influenzae ]
							[db:pir]
237750_c2_97	840	3443	861	286	394	1.00E−36	[ac:h69876] [pn:cell-division protein homolog ylmh] [gn:ylmh] [or: bacillus subtilis ]
							[db:pir]
2378750_c3_25	841	3444	723	240	488	1.10E−46	[ac:q02170] [gn:ysxa] [or: bacillus subtilis ] [de:dna repair protein radc homolog (orfb)]
							[sp:q02170] [db:swissprot]
2379063_f3_31	842	3445	828	275	65	0.72	[ln:oscoret12] [ac:z75507] [pn:reverse transcriptase] [or: oryza sativa ] [sr:rice]
							[db:genpept-pln] [de: o.sativa reverse transcriptase gene of copia-like
							retrotransposon(ret12).] [le:<1] [re:
23828537_c3_33	843	3446	819	272	583	9.70E−57	[ac:p43751] [gn:pfla:act:hi0179] [or: haemophilus influenzae ] [ec:1.97.1.4] [de:pyruvate
							formate-lyase 1 activating enzyme,] [sp:p43751] [db:swissprot]
23829407_f1_1	844	3447	192	63	60	0.23	[ac:p48264] [gn:psbw] [or: cyanophora paradoxa ] [de:photosystem ii reaction centre w
							protein] [sp:p48264] [db:swissprot]
23829508_f2_82	845	3448	204	67	69	0.2	[ln:spbc16e9] [ac:z99759] [pn:hypothetical protein] [gn:spbc16e9.08]
							[or: schizosaccharomyces pombe ] [sr:fission yeast] [db:genpept-pln] [de: s.pombe
							chromosome ii cosmid c16e9.] [nt:spbc16e9.08, unknown, len:355aa] [le:12550]
							[re:13617] [di:direct]
23832950_f2_3	846	3449	1188	395	926	4.40E−93	[ac:p50889] [gn:rps1] [or: homo sapiens ] [sr:,human] [de:40s ribosomal protein s1
							(fragment)] [sp:p50889] [db:swissprot]
23833467_f3_42	847	3450	531	176	176	1.30E−13	[ac:p46854] [gn:yhhy] [or: escherichia coli ] [de:hypothetical 18.8 kd protein in gntr-ggt
							intergenic region (o162)] [sp:p46854] [db:swissprot]
23835005_c3_32	848	3451	435	144	98	2.40E−05	[ln:rnmdg2] [ac:y08769] [pn:microvascular endothelial differentiation gene] [gn:mdg2]
							[or: rattus norvegicus ] [sr:norway rat] [db:genpept-rod] [de: r.norvegicus mrna for
							microvascular endothelial differentiationgene 2.] [le:57] [re:446] [di:direct]
23836552_f3_22	849	3452	828	275	894	1.10E−89	[ln:d78182] [ac:d78182] [gn:orf4] [or: streptococcus mutans ] [sr: streptococcus mutans
							(strain:xc) dna] [db:genpept-bct] [de: streptococcus mutans dna for dtdp-rhamnose
							synthesis pathway,complete cds.] [le:1708] [re:2496] [di:direct]
23861077_f2_6	850	3453	960	319	726	6.80E−72	[ln:atceld] [ac:z77855] [pn:sugar-binding transport protein] [or: anaerocellum
							thermophilum ] [db:genpept-bct] [de: a.thermophilum celd gene.] [nt:putative] [le:2944]
							[re:3882] [di:direct]
23861592_f1_2	851	3454	309	102	84	0.00073	[ac:s68955] [pn:polyphenolic adhesive protein 3b:foot protein 3b] [or: mytilus
							galloprovincialis ] [db:pir]
23863528_f2_6	852	3455	279	92	35	0.5	[ac:p12143] [gn:rp136] [or: oryza sativa : zea mays ] [sr:,rice:maize] [de:chloroplast 50s
							ribosomal protein 136] [sp:p12143] [db:swissprot]
23869036_c2_11	853	3456	1302	433	1678	8.90E−173	[ac:p12047] [gn:purb:pure] [or: bacillus subtilis ] [ec:4.3.2.2] [de:adenylosuccinate lyase,
							(adenylosuccinase) (asl)] [sp:p12047] [db:swissprot]
23875052_f3_84	854	3457	441	146	53	0.96	[ac:i39482] [pn:msl leader peptide 2] [cl:msl leader peptide] [or: streptococcus
							agalactiae ] [db:pir]
23876468_f3_10	855	3458	240	79	132	6.00E−09	[ac:p39667] [gn:yrxa] [or: bacillus subtilis ] [de:hypothetical 19.7 kd protein in phea-nifs
							intergenic region (orf1)] [sp:p39667] [db:swissprot]
23877186_f2_3	856	3459	189	62	77	0.004	[ac:e70002] [pn:conserved hypothetical protein ytwf] [gn:ytwf] [or: bacillus subtilis ]
							[db:pir]
23881927_c2_186	857	3460	882	293	660	6.70E−65	[ln:u88974] [ac:u88974] [pn:orf12] [or: streptococcus thermophilus ] [db:genpept-bct]
							[de: streptococcus thermophilus bacteriophage 01205 dna sequence.] [le:6564] [re:7373]
							[di:direct]
23882057_f3_41	858	3461	234	77	64	0.092	[ln:af004649] [ac:af004649] [pn:nadh dehydrogenase subunit 1] [or: mitochondrion
							nesticus stygius ] [sr: nesticus stygius ] [db:genpept-inv] [de: nesticus stygius 16s
							ribosomal rna gene, partial sequence, trna-leugene, complete sequence, and nadh
							dehydrogenase
23884836_c1_46	859	3462	603	200	137	2.20E−07	[ac:p05719] [gn:hsds:hss] [or: escherichia coli ] [de:type i restriction enzyme ecoki
							specificity protein (s protein)] [sp:p05719] [db:swissprot]
23885416_f2_3	860	3463	219	72	113	1.90E−06	[ac:p54535] [gn:yqix] [or: bacillus subtilis ] [de:intergenic region precursor] [sp:p54535]
							[db:swissprot]
23906385_f2_80	861	3464	234	77	68	0.094	[ln:celf33d11] [ac:af039720] [gn:f33d11.9b] [or: caenorhabditis elegans ]
							[sr: caenorhabditis elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis
							elegans cosmid f33d11.] [nt:coded for by c. elegans cdna yk355d7.5; coded for]
							[le:24524:26060:26702]
23909388_c3_208	862	3465	189	62	64	0.3	[ln:hsu46010] [ac:u46010] [pn:hgf agonist/antagonist] [or: homo sapiens ] [sr:human]
							[db:genpept-pri2] [de:human hgf agonist/antagonist mrna, complete cds.] [nt:hepatocyte
							growth factor agonist/antagonist] [le:55] [re:687] [di:direct]
23911055_f2_14	863	3466	999	332	397	5.00E−37	[ln:bsu20445] [ac:u20445] [pn:bira protein] [gn:bira] [fn:biotin protein ligase, biotin
							operon repressor] [or: bacillus subtilis ] [db:genpept-bct] [de: bacillus subtilis biotin
							protein ligase, biotin operon repressor(bira) gene, complete cds.] [le:97] [re:1
23912561_f1_6	864	3467	336	111	86	0.0021	[ln:plu03982] [ac:u03982] [pn:presumed viral infectivity factor] [gn:vif] [or: puma
							lentivirus 14] [db:genpept-vrl] [de: puma lentivirus 14 (gag), polyprotein (pol), viral
							infectivityfactor (vif), and envelope precursor (env) genes, complete cds.] [le:5419]
23922207_c2_15	865	3468	216	71	69	0.2	[ac:p31958] [gn:leub] [or: clostridium pasteurianum ] [ec:1.1.1.85] [de:(imdh) (3-ipm-
							dh)] [sp:p31958] [db:swissprot]
23922512_f2_4	866	3469	189	62	63	0.18	[ac:s61385] [pn:icmx protein precursor] [gn:icmx] [or: legionella pneumophila ] [db:pir]
23937902_c2_48	867	3470	927	308	258	2.70E−22	[ac:c64128] [pn:lic-1 protein b] [gn:licb] [or: haemophilus influenzae ] [db:pir]
23940638_f2_23	868	3471	720	239	189	9.70E−15	[ac:p80057] [gn:blase] [or: bacillus licheniformis ] [ec:3.4.21.19] [de:endopeptidase)
							(gse)] [sp:p80057] [db:swissprot]
23941555_f3_28	869	3472	423	140	415	6.10E−39	[ac:p46899:p70969] [gn:rplr] [or: bacillus subtilis ] [de:50s ribosomal protein 118]
							[sp:p46899:p70969] [db:swissprot]
23941687_c1_33	870	3473	231	76	74	0.029	[ac:p08286] [or: gallus gallus ] [sr:,chicken] [de:histone h1.10] [sp:p08286]
							[db:swissprot]
23944155_f1_2	871	3474	870	289	1162	4.30E−118	[ln:spadca] [ac:z71552] [pn:hydrophobic membrane protein] [gn:adcb]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae adccba
							operon.] [le:714] [re:1517] [di:direct]
23944813_f3_7	872	3475	282	93	171	3.20E−12	[ac:p36672] [gn:treb] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69) (eii-tre)]
							[sp:p36672] [db:swissprot]
23947937_f3_6	873	3476	552	183	875	1.10E−87	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
23953257_f2_18	874	3477	630	209	87	0.3	[ln:af005720] [ac:af005720] [pn:chloride channel 2] [gn:clc-2] [or: rattus norvegicus ]
							[sr:norway rat] [db:genpept] [de: rattus norvegicus chloride channel (clc-2) gene,
							alternativelyspliced products, complete cds.] [nt:clc-2sb; alternatively spliced produc
23955027_f3_50	875	3478	480	159	437	2.90E−41	[ln:spu11799] [ac:u11799] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes insertion sequence is 1239 putativetransposase gene,
							complete cds.] [nt:putative transposase] [le:379] [re:1359] [di:direct]
23960137_f3_13	876	3479	1719	572	901	1.90E−90	[ac:q11047] [gn:mtcy50.10] [or: mycobacterium tuberculosis ] [de:hypothetical abc
							transporter atp-binding protein cy50.10] [sp:q11047] [db:swissprot]
2398253_c3_41	877	3480	246	81	59	0.28	[ac:p10175] [gn:cox8h] [or: bos taurus ] [sr:,bovine] [ec:1.9.3.1] [de:(viiib) (ix)]
							[sp:p10175] [db:swissprot]
2398580_f1_1	878	3481	189	62	133	3.50E−08	[ac:p37869] [gn:eno] [or: bacillus subtilis ] [ec:4.2.1.11] [de:glycerate hydro-lyase)]
							[sp:p37869] [db:swissprot]
23992082_f2_12	879	3482	186	61	57	0.41	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
23993925_f2_10	880	3483	1083	360	1668	1.00E−171	[ln:strmalr] [ac:121856] [pn:repressor protein] [gn:malr] [fn:maltose operon
							transcriptional repressor] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae mala protein and repressor protein (malr)genes, complete
							cds.] [nt:putative
2400711_f2_3	881	3484	411	136	358	6.70E−33	[ln:listms] [ac:m92842] [gn:tms] [or: listeria monocytogenes ] [sr: listeria monocytogenes
							(strain 1028) dna] [db:genpept-bct] [de: listeria monocytogenes tms and prs genes, partial
							cds.] [le:<1] [re:757] [di:direct]
24021877_f1_3	882	3485	366	121	601	1.20E−58	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
24022326_f3_18	883	3486	513	170	166	1.50E−12	[ac:b70044] [pn:conserved hypothetical protein yvna] [gn:yvna] [or: bacillus subtilis ]
							[db:pir]
24025252_f1_6	884	3487	1140	379	1885	1.00E−194	[ln:spu72720] [ac:u72720] [pn:dnaj] [gn:dnaj] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae heat shock protein 70 (dnak)
							gene,complete cds and dnaj (dnaj) gene, partial cds.] [le:3265] [re:
24025675_f3_26	885	3488	216	71	64	0.11	[ln:olu63651] [ac:u63651] [pn:envelope glycoprotein] [gn:env] [or: ovine lentivirus ]
							[db:genpept-vrl] [de: ovine lentivirus envelope glycoprotein (env) gene, partial cds.]
							[le:<1] [re:
24026635_c2_18	886	3489	525	174	521	3.60E−50	[ac:e69844] [pn:gtp pyrophosphokinase homolog yjbm] [gn:yjbm] [or: bacillus subtilis ]
							[db:pir]
24031713_f1_9	887	3490	1995	664	565	3.10E−120	[ac:s75333] [pn:hypothetical protein] [cl:unassigned atp-binding cassette proteins:malk
							protein homology] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803] [sr:pcc 6803,]
							[db:pir]
24032512_f3_30	888	3491	237	78	75	0.02	[ac:p45103] [gn:hi1198] [or: haemophilus influenzae ] [de:hypothetical protein hi1198]
							[sp:p45103] [db:swissprot]
24063330_c1_158	889	3492	507	168	260	1.60E−22	[ac:q38627] [gn:1] [or:bacteriophage sf6:bacteriophage rho-15] [de:terminase small
							subunit (glp)] [sp:q38627] [db:swissprot]
24066015_c2_1	890	3493	264	87	206	5.30E−16	[ac:o08328] [gn:glga] [or: bacillus stearothermophilus ] [ec:2.4.1.21] [de:synthase)]
							[sp:o08328] [db:swissprot]
24068818_f3_40	891	3494	240	79	68	0.16	[ln:asu13767] [ac:u13767] [or:anabaena sp.] [sr:anabaena sp] [db:genpept-bct]
							[de:anabaena sp. strain pcc 7120 hlya (hlya) gene, partial cds andtransposase (tnpa)
							gene, complete cds.] [nt:orf2] [le:5070] [re:5828] [di:complement]
24070318_f1_7	892	3495	462	153	117	1.40E−06	[ln:cet26e3] [ac:z82053] [pn:t26e3.2] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid t26e3, complete sequence.] [nt:protein predicted
							using genefinder; similar to mutt] [le:23985:24138:24323:24497]
							[re:24090:24215:24405:247
24079383_f3_85	893	3496	219	72	66	0.38	[ac:p34316] [gn:c07a9.5] [or: caenorhabditis elegans ] [de:hypothetical 41.7 kd protein
							c07a9.5 in chromosome iii] [sp:p34316] [db:swissprot]
24089665_f2_9	894	3497	1221	406	582	1.20E−56	[ln:sgu40139] [ac:u40139] [pn:comb] [gn:comb] [or: streptococcus gordonii ]
							[sr: streptococcus gordonii strain=challis] [db:genpept-bct] [de: streptococcus gordonii
							abc transporter coma (coma) gene, partialcds and abc transporter comb (comb) and
							comx (comx) g
24089675_c3_30	895	3498	192	63	246	5.00E−21	[ac:p23379] [gn:ung] [or: streptococcus pneumoniae ] [ec:3.2.2.—] [de:uracil-dna
							glycosylase,] [sp:p23379] [db:swissprot]
24100026_f2_2	896	3499	921	306	686	1.20E−67	[ac:e69879] [pn:conserved hypothetical protein ylov] [gn:ylov] [or: bacillus subtilis ]
							[db:pir]
24105312_f3_28	897	3500	297	98	60	0.23	[ln:af005898] [ac:af005898] [or: homo sapiens ] [sr:human] [db:genpept-pri2] [de: homo
							sapiens na,k-atpase beta-3 subunit pseudogene, completesequence.] [nt:orf] [le:357]
							[re:548] [di:direct]
24218753_f2_13	898	3501	216	71	76	0.047	[ac:s43527:s42401] [pn:gene p protein] [or:phage hk022] [db:pir]
24218758_f3_38	899	3502	210	69	76	0.047	[ac:s43527:s42401] [pn:gene p protein] [or:phage hk022] [db:pir]
24220327_f1_9	900	3503	348	115	77	0.03	[ac:h69970] [pn:conserved hypothetical protein yrah] [gn:yrah] [or: bacillus subtilis ]
							[db:pir]
24220377_f3_18	901	3504	192	63	55	0.099	[ln:celc48b6] [ac:u97189] [gn:c48b6.5] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c48b6.]
							[le:11188:12453:12768] [re:11358:12583:12885] [di:complementjoin]
2422186_c3_35	902	3505	804	267	500	6.00E−48	[ac:g70000] [pn:two-component response regulator [ytsb] homolog ytsa] [gn:ytsa]
							[or: bacillus subtilis ] [db:pir]
24224062_f1_5	903	3506	1392	463	327	2.50E−27	[ac:p39695] [gn:comec:come3] [or: bacillus subtilis ] [de:come operon protein 3]
							[sp:p39695] [db:swissprot]
24226387_c3_119	904	3507	204	67	66	0.068	[ln:ecspc] [ac:x01563] [or: escherichia coli ] [db:genpept-bct] [de: escherichia coli spc
							ribosomal protein operon.] [nt:s8 (rpsh) (aa 1-130)] [sp:p02361] [le:1846] [re:2238]
							[di:direct]
24226537_c2_66	905	3508	579	192	304	3.60E−27	[ln:ae001163] [ac:ae001163:ae000783] [pn:4-methyl-5(b-hydroxyethyl)-thiazole]
							[gn:bb0621] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 49 of 70) of the complete genome.] [nt:similar to
							pid:11008
24227188_c2_18	906	3509	750	249	915	6.40E−92	[ac:a64963] [pn:hypothetical protein b1983] [or: escherichia coli ] [db:pir]
24228387_f3_52	907	3510	288	95	89	0.00022	[ac:p45911] [gn:yqan] [or: bacillus subtilis ] [de:hypothetical 16.1 kd protein in spoiiic-
							cwla intergenic region] [sp:p45911] [db:swissprot]
24228427_c1_20	908	3511	288	95	76	0.0051	[ac:p39302] [gn:sgab] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69)] [sp:p39302]
							[db:swissprot]
24228462_c1_55	909	3512	201	66	71	0.22	[ln:celf19c7] [ac:u42439] [gn:f19c7.4] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid f19c7.]
							[nt:similar to human lysosomal pro-x carboxypeptidase] [le:8537:8966:9776:9934] [re
24229202_c2_196	910	3513	381	126	55	0.74	[ln:humighwmb] [ac:m63030] [pn:immunoglobulin heavy chain j region] [gn:jh6]
							[or: homo sapiens ] [sr:human adult peripheral blood dna] [db:genpept-pri1] [de:human
							ig germline h-chain j6-region, partial cds.] [nt:putative] [le:<59] [re:
24229692_c1_151	911	3514	345	114	51	0.95	[ac:s47281] [pn:hypothetical protein 1] [or: williopsis suaveolens ] [db:pir]
2423325_c3_121	912	3515	1953	650	2194	1.90E−227	[ac:p42359] [or: streptococcus gordonii challis ] [ec:3.4.24.—] [de:(orf6) (fragment)]
							[sp:p42359] [db:swissprot]
24240631_c3_78	913	3516	573	190	407	4.30E−38	[ac:p46322] [gn:pgsa] [or: bacillus subtilis ] [ec:2.7.8.5] [de:(ec 2.7.8.5)
							(phosphatidylglycerophosphate synthase) (pgp synthase)] [sp:p46322] [db:swissprot]
24245256_c1_29	914	3517	234	77	68	0.036	[ac:s43483] [pn:hypothetical protein] [or: escherichia coli ] [db:pir]
24251537_c2_14	915	3518	1338	445	2219	4.20E−230	[ln:spu16156] [ac:u16156:m17362:m58706] [pn:dihydrofolate synthetase] [gn:sulb]
							[fn:folate biosynthesis] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae dihydropteroate synthase (sula),dihydrofolate synthetase
24253407_c2_58	916	3519	357	118	147	1.70E−09	[ac:p35649] [or: eikenella corrodens ] [de:hypothetical 66.3 kd protein in hag2 5′region]
							[sp:p35649] [db:swissprot]
24256910_c2_75	917	3520	237	78	71	0.017	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
24257337_f1_3	918	3521	1056	351	1329	8.60E−136	[ac:q02138] [gn:ilvc] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:1.1.1.86] [de:isomeroreductase) (alpha-keto-beta-hydroxylacil reductoisomerase)]
							[sp:q02138] [db:swissprot]
24257752_c3_63	919	3522	231	76	64	0.092	[ln:sccox6urf] [ac:x14452] [gn:cox6] [or: saccharomyces cerevisiae ] [sr:baker's yeast]
							[db:genpept-pln] [de: s.cerevisiae cox6/urf-u intergenic region.] [nt:urf(aa 1-56)]
							[le:360] [re:530] [di:direct]
24257763_c3_115	920	3523	234	77	104	5.60E−06	[ln:af034574] [ac:af034574] [pn:putative cruciform dna binding protein] [gn:gv1]
							[or: glomus versiforme ] [db:genpept-pln] [de: glomus versiforme putative cruciform dna
							binding protein (gv1)mrna, complete cds.] [nt:similar to ustilago maydis hmp1, encoded
							by
24257813_c2_60	921	3524	774	257	1166	1.60E−118	[ac:p52281] [gn:glpf] [or: streptococcus pneumoniae ] [de:glycerol uptake facilitator
							protein] [sp:p52281] [db:swissprot]
24257883_f3_39	922	3525	342	113	188	1.10E−13	[ac:p32399] [gn:yhge] [or: bacillus subtilis ] [de:hypothetical 84.1 kd protein in hemy-
							gltt intergenic region (orfb)] [sp:p32399] [db:swissprot]
24257962_c2_39	923	3526	702	233	822	4.60E−82	[ln:spspsa47] [ac:aj002055] [pn:spsa protein] [fn:iga binding protein] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae siga binding.] [le:1]
							[re:1746] [di:direct]
24258380_c3_40	924	3527	477	158	307	1.70E−27	[ln:llabikorf] [ac:y11901] [pn:dutpase] [or: lactococcus lactis ] [db:genpept-bct]
							[de: l.lactis abik gene, gene encoding dutpase and 8 orfs.] [nt:orf3] [le:1518] [re:1937]
							[di:direct]
24259626_c1_33	925	3528	1344	447	340	5.40E−31	[ac:q47745] [gn:vansb] [or: enterococcus faecalis ] [sr:, streptococcus faecalis ] [ec:2.7.3.—
							] [de:protein vansb) (vancomycin histidine protein kinase)] [sp:q47745] [db:swissprot]
24267202_c1_80	926	3529	672	223	480	8.00E−46	[ac:e69876] [pn:conserved hypothetical protein ylme] [gn:ylme] [or: bacillus subtilis ]
							[db:pir]
24267287_c2_201	927	3530	741	246	74	0.036	[ln:af022236] [ac:af022236] [pn:escs] [gn:escs] [or: escherichia coli ] [db:genpept]
							[de: escherichia coli strain e2348/69 pathogenicity island, rorf1 (rorf1), rorf2 (rorf2), escr
							(escr), escs (escs), esct (esct), escu (escu), cesd (cesd), escc (escc), escj (e
24269061_f1_4	928	3531	420	139	204	1.40E−16	[ln:sgu81957] [ac:u81957] [pn:comyd] [gn:comyd] [or: streptococcus gordonii ]
							[db:genpept-bct] [de: streptococcus gordonii rna polymerase beta' subunit (rpoc),putative
							dna binding protein, putative abc transporter subunitcomya (comya), putative abc
							transport
24273292_f1_1	929	3532	525	174	705	1.10E−69	[ln:af000954] [ac:af000954] [or: streptococcus mutans ] [db:genpept-bct]
							[de: streptococcus mutans diacyglycerol kinase (dgk) gene, complete cds,and g-protein
							(sgp) gene, partial cds.] [nt:orf3] [le:205] [re:699] [di:direct]
24297630_f2_20	930	3533	771	256	148	7.70E−14	[ac:s56619:b65255] [pn:gpmb protein:hypothetical protein o215b] [gn:gpmb]
							[or: escherichia coli ] [db:pir]
24297678_c1_64	931	3534	2571	856	1507	1.20E−154	[ac:a69979] [pn:conjugation transfer protein homolog yrrc] [gn:yrrc] [or: bacillus
							subtilis ] [db:pir]
24300028_c3_108	932	3535	750	249	961	8.50E−97	[ac:q07211] [gn:scrk] [or: streptococcus mutans ] [ec:2.7.1.4] [de:fructokinase,]
							[sp:q07211] [db:swissprot]
24303452_f2_8	933	3536	201	66	48	0.6	[ac:p37697] [gn:ccpax] [or: acetobacter xylinum ] [sr:, acetobacter pasteurianus ]
							[de:cellulose complementing protein] [sp:p37697] [db:swissprot]
24303927_f2_19	934	3537	654	217	376	8.30E−35	[ln:af015310] [ac:af015310] [pn:bth1] [or: brassica napus ] [sr:rape] [db:genpept-pln]
							[de: brassica napus bth1 mrna, complete cds.] [le:20] [re:1591] [di:direct]
24303928_c1_45	935	3538	423	140	76	0.68	[ac:i47040] [pn:acyl-coa cholesterol acyltransferase, liver (clone 14b)] [or: oryctolagus
							cuniculus ] [sr:, domestic rabbit] [db:pir]
24303962_c1_42	936	3539	699	232	181	9.70E−13	[ln:u93872] [ac:u93872] [or:kaposi's sarcoma-associated herpesvirus] [sr:kaposi's
							sarcoma-associated herpesvirus - human herpesvirus 8] [db:genpept-vrl] [de:kaposi's
							sarcoma-associated herpesvirus glycoprotein m, dnareplication protein, glycoprotein,
							dna
24304587_f1_1	937	3540	786	261	374	1.40E−34	[ac:p31728] [gn:hlpa:hi0620] [or: haemophilus influenzae ] [de:28 kd outer membrane
							protein precursor] [sp:p31728] [db:swissprot]
24306282_c3_18	938	3541	639	212	440	1.40E−41	[ac:g69815] [pn:abc transporter (atp-binding protein) homolog ygad] [gn:ygad]
							[or: bacillus subtilis ] [db:pir]
24306927_f1_8	939	3542	720	239	993	3.50E−100	[ac:p29727] [gn:guaa] [or: bacillus subtilis ] [ec:6.3.5.2] [de:amidotransferase) (gmp
							synthetase)] [sp:p29727] [db:swissprot]
24307262_c1_34	940	3543	267	88	137	1.80E−09	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
24313276_f1_2	941	3544	306	101	206	4.10E−16	[ac:p42086] [gn:pbux] [or: bacillus subtilis ] [de: xanthine permease ] [sp:p42086]
							[db:swissprot]
24313340_f2_2	942	3545	270	89	63	0.65	[ac:q57944] [gn:mj0524] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj0524] [sp:q57944] [db:swissprot]
24313812_c1_44	943	3546	393	130	142	1.10E−09	[ac:d64822] [pn:hypothetical protein b0844] [or: escherichia coli ] [db:pir]
24319556_c1_30	944	3547	291	96	73	0.2	[ln:ceb0393] [ac:z37983] [pn:b0393.4] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid b0393, complete sequence.] [nt:amino terminus of
							this predicted protein is proline] [le:8213:8460:9087] [re:8410:8596:9336]
							[di:complement
24328136_f3_30	945	3548	468	155	614	5.00E−60	[ac:o06445] [gn:rplo] [or: staphylococcus aureus ] [de:50s ribosomal protein 115]
							[sp:o06445] [db:swissprot]
24332806_c3_10	946	3549	873	290	411	1.60E−38	[ac:p45873] [gn:ywke] [or: bacillus subtilis ] [de:hemk protein homolog] [sp:p45873]
							[db:swissprot]
24334665_f1_4	947	3550	276	91	69	0.48	[ln:celb0507] [ac:u64833] [gn:b0507.6] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid b0507.]
							[le:580:691:830:1889:2298] [re:642:774:991:2008:2404] [di:directjoin]
24334762_c2_104	948	3551	1245	414	188	2.40E−12	[ln:pseorf1] [ac:d84146] [pn:reductase] [gn:paha] [or: pseudomonas aeruginosa ]
							[sr: pseudomonas aeruginosa (strain:pak1) dna] [db:genpept-bct] [de: pseudomonas
							aeruginosa pah genes for 12 orfs (components ofnaphthalene dioxygenase,
							dehydrogenase, hydratase-a
24337563_f2_7	949	3552	1467	488	706	9.00E−70	[ac:q11046] [gn:mtcy50.09] [or: mycobacterium tuberculosis ] [de:hypothetical abc
							transporter atp-binding protein cy50.09] [sp:q11046] [db:swissprot]
24337763_c2_43	950	3553	954	317	1604	6.20E−165	[ln:soorfs] [ac:z79691] [pn:orfd] [gn:yorfd] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae yorf[a,b,c,d,e], ftsl, pbpx and regr genes.] [le:2748] [re:3698]
							[di:direct]
24337905_c2_37	951	3554	570	189	302	5.80E−27	[ac:q10612] [gn:mtcy373.03] [or: mycobacterium tuberculosis ] [de:hypothetical 18.2 kd
							protein cy373.03] [sp:q10612] [db:swissprot]
24338562_c2_12	952	3555	552	183	885	9.60E−89	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
24338562_f1_3	953	3556	513	170	493	3.30E−47	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
24338562_f1_4	954	3557	1263	420	1924	7.60E−199	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
24338562_f1_5	955	3558	552	183	840	5.70E−84	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
24338562_f1_51	956	3559	186	61	85	0.00096	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
24338562_f3_16	957	3560	552	183	879	4.20E−88	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
24338562_f3_29	958	3561	552	183	858	7.00E−86	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
24338562_f3_59	959	3562	1290	429	2039	5.00E−211	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
24345306_f1_2	960	3563	768	255	671	4.60E−66	[ac:h69334] [pn:glutamine abc transporter, atp-binding protein (glnq) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
24353393_f3_24	961	3564	480	159	92	0.039	[ac:b69825] [pn:cell wall-binding protein homolog yhdd] [gn:yhdd] [or: bacillus
							subtilis ] [db:pir]
24353427_c3_42	962	3565	486	161	274	5.40E−24	[ac:p36922] [or: enterococcus faecalis ] [sr:, streptococcus faecalis ] [de:ebsc protein]
							[sp:p36922] [db:swissprot]
24353462_c1_12	963	3566	1419	472	2426	4.90E−252	[ac:a28568:s12829] [pn:pneumolysin] [or: streptococcus pneumoniae ] [db:pir]
2437902_c1_45	964	3567	2076	691	69	0.16	[ac:p12501] [gn:pol] [or:simian immunodeficiency virus] [sr:,agm385 isolate:siv-agm]
							[ec:3.4.23.16:2.7.7.49:3.1.26.4] [de:transcriptase,; ribonuclease h,) (fragment)]
							[sp:p12501] [db:swissprot]
24390756_f3_22	965	3568	1521	506	1312	5.40E−134	[ac:p05653] [gn:gyra:nala:cafb] [or: bacillus subtilis ] [ec:5.99.1.3] [de:dna gyrase
							subunit a,] [sp:p05653] [db:swissprot]
24390812_f3_18	966	3569	219	72	53	0.43	[ln:celk09e2] [ac:u23527] [gn:k09e2.1] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid k09e2.]
							[nt:weak similarity to collagen alpha] [le:24698:25089:25234:25455] [re:24876:25177
24390812_f3_8	967	3570	237	78	69	0.028	[ac:s07013] [pn:hypothetical protein 95 (orit 5′ region)] [or: escherichia coli ] [db:pir]
24391961_c3_58	968	3571	390	129	72	1	[ac:a64706] [pn:lipase-like protein] [or: helicobacter pylori ] [db:pir]
24392753_c1_13	969	3572	189	62	48	0.17	[ln:af005383] [ac:af005383] [pn:xylanase] [gn:xynd] [fn:xylosidase activity]
							[or: caldicellulosiruptor saccharolyticus ] [db:genpept-bct] [de: caldicellulosiruptor
							saccharolyticus putative transport protein(xyng), putative transport protein (xynh),
							xylanase
24394003_c2_6	970	3573	216	71	61	0.025	[ac:p53230] [gn:ygr046w] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 44.2 kd protein in rmel-tfc4 intergenic region] [sp:p53230]
							[db:swissprot]
24398425_f1_18	971	3574	1407	468	298	2.50E−24	[ac:f69762] [pn:transporter homolog ycli] [gn:ycli] [or: bacillus subtilis ] [db:pir]
24398437_c3_82	972	3575	804	267	1016	1.30E−102	[ac:p49668] [gn:rpsb] [or: pediococcus acidilactici ] [de:30s ribosomal protein s2]
							[sp:p49668] [db:swissprot]
24399050_f2_34	973	3576	399	132	233	1.20E−19	[ac:p54590] [gn:yhcf] [or: bacillus subtilis ] [de:hypothetical transcriptional regulator in
							glpd-cspb intergenic region] [sp:p54590] [db:swissprot]
24399062_c3_67	974	3577	630	209	96	0.018	[ln:mtehgns7] [ac:z71699] [pn:nadh dehydrogenase subunit 4] [or:unidentified]
							[db:genpept-una] [de: e.herklotsi mitochondrion genes for trna-ser and nadh
							dehydrogenasesubunit 3.] [le:303] [re:
24400301_f1_5	975	3578	657	218	242	1.30E−20	[ac:q47086] [gn:cbrc] [or: erwinia chrysanthemi ] [de:iron(iii) chloride/dicitrate transport
							system permease protein cbrc] [sp:q47086] [db:swissprot]
24400313_c1_25	976	3579	624	207	186	1.10E−14	[ac:a57362] [pn:gyrb protein] [gn:gyrb] [or: streptococcus pneumoniae ] [db:pir]
24407503_c3_55	977	3580	267	88	67	0.12	[ln:cem79] [ac:z50806] [pn:m79.3] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid m79, complete sequence.] [le:31773:32009:32175]
							[re:31956:32126:32281] [di:complementjoin]
24407515_f2_16	978	3581	699	232	577	4.20E−56	[ac:p38493] [gn:cmk:jofc] [or: bacillus subtilis ] [ec:2.7.4.14] [de:kinase) (cmp kinase)]
							[sp:p38493] [db:swissprot]
24407762_f3_42	979	3582	234	77	65	0.00076	[ln:spu09239] [ac:u09239] [gn:alia] [fn:oligopeptide transport] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae type 19f capsular
							polysaccharidebiosynthesis operon, (cps19fabcdefghijklmno) genes, complete cds,and
							alia gene, par
24407777_c3_17	980	3583	450	149	178	8.00E−14	[ac:d69783] [pn:transcriptional regulator (marr family) homolog ydgj] [gn:ydgj]
							[or: bacillus subtilis ] [db:pir]
24408256_c1_19	981	3584	336	111	159	8.30E−12	[ac:d70063] [pn:hypothetical protein ywna] [gn:ywna] [or: bacillus subtilis ] [db:pir]
24408567_f3_6	982	3585	573	190	447	2.50E−42	[ac:p49778] [gn:efp] [or: bacillus subtilis ] [de:elongation factor p (ef-p)] [sp:p49778]
							[db:swissprot]
24409825_f3_19	983	3586	906	301	68	0.2	[ac:jh0207] [pn:hypothetical 10.8k protein] [or: enterococcus faecalis ] [db:pir]
24410000_c2_75	984	3587	321	106	96	3.90E−05	[ac:p37466] [gn:veg] [or: bacillus subtilis ] [de:veg protein] [sp:p37466] [db:swissprot]
24410932_f1_2	985	3588	327	108	206	8.60E−17	[ac:s74709] [pn:hypothetical protein sll1188] [or:synechocystis sp.] [sr:pcc 6803, , pcc
							6803] [sr:pcc 6803,] [db:pir]
24412752_f3_48	986	3589	306	101	73	0.11	[ac:p14847] [gn:ptx1:crp] [or: mus musculus ] [sr:,mouse] [de:c-reactive protein
							precursor] [sp:p14847] [db:swissprot]
24412762_c3_68	987	3590	1161	386	491	5.40E−47	[ac:d69159] [pn:methyl coenzyme m reductase system, component a2 homolog]
							[gn:mth454] [or: methanobacterium thermoautotrophicum ] [db:pir]
24413137_c3_153	988	3591	300	99	135	2.90E−09	[ac:b30868] [pn:hypothetical protein 1 (insertion sequence is861)] [gn:is861-orf 1]
							[or: streptococcus agalactiae ] [db:pir]
24413187_f1_3	989	3592	681	226	681	4.00E−67	[ac:c64666] [pn:glutamine abc transporter, atp-binding protein] [cl:inner membrane
							protein malk:malk protein homology] [or: helicobacter pylori ] [db:pir]
24413562_f3_5	990	3593	471	156	142	5.20E−10	[ac:p54396] [gn:ypmb] [or: bacillus subtilis ] [de:hypothetical 17.9 kd protein in ding-
							aspb intergenic region] [sp:p54396] [db:swissprot]
24414682_f2_20	991	3594	210	69	64	0.092	[ln:stu93029] [ac:u93029] [pn:amphipathic pore-forming peptide precursor] [gn:thma]
							[or: streptococcus thermophilus ] [db:genpept-bct] [de: streptococcus thermophilus
							thermophilin 13 operon; amphipathicpore-forming peptide precursor (thma), enhancer
							peptide
24414717_c2_33	992	3595	252	83	258	2.70E−22	[ac:s66013:s11368] [pn:ribosomal protein s18:ribosomal protein bs21] [gn:rpsr]
							[cl: escherichia coli ribosomal protein s18] [or: bacillus subtilis ] [db:pir]
24414763_f2_4	993	3596	549	182	486	1.80E−46	[ac:e69880] [pn:conserved hypothetical protein ylqe] [gn:ylqe] [or: bacillus subtilis ]
							[db:pir]
24415902_f3_12	994	3597	1038	345	208	4.90E−15	[ac:p55530] [gn:y4kl] [or:rhizobium sp] [sr:ngr234,] [de:hypothetical 37.6 kd aaa-
							family atpase y4kl] [sp:p55530] [db:swissprot]
24415937_f3_8	995	3598	1047	348	1044	1.40E−105	[ac:o08326] [gn:glgc] [or: bacillus stearothermophilus ] [ec:2.7.7.27] [de:synthase) (adp-
							glucose pyrophosphorylase)] [sp:o08326] [db:swissprot]
24415942_c2_16	996	3599	720	239	92	0.04	[ac:c69334] [pn:2-hydroxy-6-oxohepta-2,4-dienoate hydrolase (todf) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
24415967_f3_44	997	3600	999	332	503	2.90E−48	[ln:llu81487] [ac:u81487] [pn:histidine kinase] [gn:llkind] [or: lactococcus lactis
							cremoris ] [db:genpept-bct] [de: lactococcus lactis subsp. cremoris mg1363 histidine
							kinase (llkind)gene, complete cds.] [le:1] [re:999] [di:direct]
24417062_f3_7	998	3601	210	69	122	6.90E−08	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
24417267_c3_56	999	3602	3363	1120	469	3.00E−41	[ac:i41291] [pn:ecoa type i restriction-modification enzyme r subunit] [or: escherichia
							coli ] [db:pir]
24417318_c3_33	1000	3603	1173	390	373	1.70E−34	[ac:p21175] [gn:brac] [or: pseudomonas aeruginosa ] [de:protein precursor (livat-bp)]
							[sp:p21175] [db:swissprot]
24417338_f2_18	1001	3604	414	137	521	3.60E−50	[ln:bacrplp] [ac:147971] [pn:ribosomal protein s8] [gn:rpsh] [or: bacillus subtilis ]
							[db:genpept-bct] [de: bacillus subtilis ribosomal protein (rplpnxefroq,
							rpmcdj,rpsqnhemk) genes, integral membrane protein (secy) gene, adenylatekinase
							(adk) gene, methioni
24417813_f3_37	1002	3605	894	297	895	8.40E−90	[ac:c69638] [pn:gmp synthetase guaa] [gn:guaa] [or: bacillus subtilis ] [db:pir]
24421938_f3_8	1003	3606	513	170	96	0.0015	[ac:b70064] [pn:phosphinothricin acetyltransferase homolog ywnh] [gn:ywnh]
							[or: bacillus subtilis ] [db:pir]
24422087_f2_23	1004	3607	2517	838	2067	5.40E−214	[ac:p75793] [gn:ybiw] [or: escherichia coli ] [ec:2.3.1.54] [de:lyase 3)] [sp:p75793]
							[db:swissprot]
24422625_c3_59	1005	3608	579	192	332	3.80E−30	[ac:p54491] [gn:yqgn] [or: bacillus subtilis ] [de:hypothetical 21.4 kd protein in soda-
							comga intergenic region] [sp:p54491] [db:swissprot]
24423186_c2_8	1006	3609	306	101	196	4.40E−15	[ac:p45246] [gn:hi1545] [or: haemophilus influenzae ] [de:hypothetical symporter
							hi1545] [sp:p45246] [db:swissprot]
24423437_f2_5	1007	3610	2292	763	1401	2.00E−143	[ac:p21458:p21459] [gn:spoiiie] [or: bacillus subtilis ] [de:stage iii sporulation protein e]
							[sp:p21458:p21459] [db:swissprot]
24424007_f2_6	1008	3611	606	201	216	7.50E−18	[ac:c69895] [pn:conserved hypothetical protein yoaa] [gn:yoaa] [or: bacillus subtilis ]
							[db:pir]
24426577_c1_69	1009	3612	354	117	267	3.00E−23	[ac:p54457] [gn:yqel] [or: bacillus subtilis ] [de:hypothetical 13.3 kd protein in arod-
							comer intergenic region] [sp:p54457] [db:swissprot]
24426702_f1_44	1010	3613	792	263	182	6.30E−18	[ln:bk5tattp] [ac:144593] [pn:repressor protein] [or: lactococcus lactis phage bk5-t]
							[sr:bacteriophage bk5-t dna] [db:genpept-phg] [de:bacteriophage bk5-t orf410, 3′ end pf
							cds, 20 orfs, repressorprotein, and cro repressor protein genes, complete cds, or
24428137_c1_75	1011	3614	339	112	106	3.40E−06	[ac:c69878] [pn:hypothetical protein yloh] [gn:yloh] [or: bacillus subtilis ] [db:pir]
24428167_f2_12	1012	3615	249	82	371	2.80E−34	[ac:s26297] [pn:hypothetical protein 76] [or: streptococcus pneumoniae ] [db:pir]
24429812_f3_30	1013	3616	1413	470	1607	3.00E−165	[ln:llu78036] [ac:u78036] [pn:dipeptidase] [or: lactococcus lactis ] [db:genpept-bct]
							[de: lactococcus lactis dipeptidase gene, complete cds.] [le:79] [re:1497] [di:direct]
24429838_f2_4	1014	3617	408	135	282	7.60E−25	[ac:s67490] [pn:single-stranded dna-binding protein] [cl:single-stranded dna-binding
							protein homology] [or:eubacterium sp.] [db:pir]
24430251_c2_15	1015	3618	339	112	71	0.22	[ac:d65019] [pn:hypothetical protein b2445] [or: escherichia coli ] [db:pir]
24430312_f3_30	1016	3619	1257	418	1077	4.30E−109	[ac:p39762] [gn:amps] [or: bacillus subtilis ] [ec:3.4.11.—] [de:aminopeptidase amps,]
							[sp:p39762] [db:swissprot]
24430388_f3_5	1017	3620	687	228	426	8.80E−40	[ac:p75831] [gn:ybjz] [or: escherichia coli ] [de:intergenic region] [sp:p75831]
							[db:swissprot]
24430436_f1_5	1018	3621	1839	612	3008	0	[ln:spu72720] [ac:u72720] [pn:heat shock protein 70] [gn:dnak] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae heat shock protein 70
							(dnak) gene,complete cds and dnaj (dnaj) gene, partial cds.] [nt:hsp70; partial peptide
							sequen
24430437_f3_15	1019	3622	588	195	56	0.91	[ln:hsu80779] [ac:u80779] [pn:t cell receptor beta chain] [or: homo sapiens ] [sr:human]
							[db:genpept-pri2] [de:human t cell receptor beta chain mrna, partial cds.] [le:<1] [re:
24431292_c3_210	1020	3623	264	87	91	0.00017	[ac:p18017] [or: clostridium perfringens ] [de:hypothetical 19.7 kd protein (orf6)]
							[sp:p18017] [db:swissprot]
24431563_f2_17	1021	3624	306	101	68	0.3	[ac:q00516] [gn:xcpv:pddc] [or: pseudomonas aeruginosa ] [de:pddc)] [sp:q00516]
							[db:swissprot]
24432827_f2_7	1022	3625	357	118	274	5.40E−24	[ac:p19083] [gn:glnr] [or: bacillus cereus ] [de:regulatory protein glnr] [sp:p19083]
							[db:swissprot]
24432962_c3_59	1023	3626	2229	742	302	4.50E−31	[ln:cef40f9] [ac:z70753] [pn:f40f9.6] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid f40f9, complete sequence.] [nt:similar to glycosyl
							hydrolase; cdna est yk10h3.5] [le:23461:23645:24111] [re:23586:24046:25315]
							[di:complem
24433126_f2_20	1024	3627	285	94	144	9.90E−10	[ac:q57368] [gn:hi0301] [or: haemophilus influenzae ] [de:hypothetical protein hi0301]
							[sp:q57368] [db:swissprot]
2445237_c3_33	1025	3628	249	83	67	0.031	[ln:ab000094] [ac:ab000094] [pn:inorganic phosphate transporter] [gn:pht2]
							[or: arabidopsis thaliana ] [sr: arabidopsis thaliana (strain:columbia) dna] [db:genpept-
							pln] [de: arabidopsis thaliana gene for inorganic phosphate transporter,protein
24475452_c1_149	1026	3629	231	76	69	0.23	[ac:q01969] [gn:omp-alpha] [or: thermotoga maritima ] [de:outer membrane protein
							alpha precursor] [sp:q01969] [db:swissprot]
24484627_f1_10	1027	3630	1443	480	1721	2.50E−177	[ac:d70019] [pn:conserved hypothetical protein yuru] [gn:yuru] [or: bacillus subtilis ]
							[db:pir]
24484675_c2_52	1028	3631	948	315	762	1.00E−75	[ac:p54548] [gn:yqjk] [or: bacillus subtilis ] [de:hypothetical 34.0 kd protein in glnq-ansr
							intergenic region] [sp:p54548] [db:swissprot]
24485306_c2_19	1029	3632	789	262	549	3.90E−53	[ac:f69844] [pn:conserved hypothetical protein yjbn] [gn:yjbn] [or: bacillus subtilis ]
							[db:pir]
24485625_f2_3	1030	3633	591	196	258	2.70E−22	[ac:p50726] [gn:ypaa] [or: bacillus subtilis ] [de:hypothetical 20.5 kd protein in sera-fer
							intergenic region] [sp:p50726] [db:swissprot]
24485692_c2_36	1031	3634	1383	460	1495	2.20E−153	[ac:p37572] [gn:rada:sms] [or: bacillus subtilis ] [de:dna repair protein rada homolog
							(dna repair protein sms homolog)] [sp:p37572] [db:swissprot]
24485885_c3_24	1032	3635	2331	776	1965	6.80E−219	[ac:e69794] [pn:atp-dependent dna helicase homolog yerf] [gn:yerf] [or: bacillus
							subtilis ] [db:pir]
24485885_f1_1	1033	3636	1356	451	380	3.10E−35	[ac:s76138] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803,] [db:pir]
24486262_f2_10	1034	3637	702	233	621	9.10E−61	[ac:p39121] [gn:dra] [or: bacillus subtilis ] [ec:4.1.2.4] [de:(deoxyriboaldolase)]
							[sp:p39121] [db:swissprot]
24486503_f1_11	1035	3638	1029	342	475	2.70E−45	[ac:q02115] [gn:lytr] [or: bacillus subtilis ] [de:membrane-bound protein lytr]
							[sp:q02115] [db:swissprot]
24487502_c1_18	1036	3639	738	245	474	3.40E−45	[ac:e69814] [pn:conserved hypothetical protein yfnb] [gn:yfnb] [or: bacillus subtilis ]
							[db:pir]
24487930_c3_40	1037	3640	660	219	458	1.70E−43	[ac:d70039] [pn:two-component response regulator [yvft] homolog yvfu] [gn:yvfu]
							[or: bacillus subtilis ] [db:pir]
24488193_f2_8	1038	3641	1296	431	1300	1.00E−132	[ac:p22326] [gn:tyrs] [or: bacillus subtilis ] [ec:6.1.1.1] [de:(tyrrs)] [sp:p22326]
							[db:swissprot]
24488756_f3_16	1039	3642	264	87	65	0.36	[ac:p45433] [or: oncorhynchus mykiss ] [sr:,rainbow trout: salmo gairdneri ] [de:(signal
							sequence receptor alpha subunit) (ssr-alpha)] [sp:p45433] [db:swissprot]
24490632_f1_4	1040	3643	408	135	326	1.70E−29	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
24490750_c2_6	1041	3644	912	304	342	3.30E−31	[ln:d89150] [ac:d89150] [or: schizosaccharomyces pombe ] [sr: schizosaccharomyces
							pombe (strain:pr745) cdna to mrna] [db:genpept-pln] [de:fission yeast mrna, partial
							cds.] [nt:similar to saccharomyces serevisiae hypothetical] [le:<1] [re:1121] [di:direct]
24492137_f2_24	1042	3645	447	148	368	5.90E−34	[ln:xlnm23] [ac:x97899] [pn:nm23/nucleoside diphosphate kinase] [or: xenopus laevis ]
							[sr:african clawed frog] [db:genpept-vrt] [de: x.leavis mrna for mrna for
							nm23/nucleoside diphosphate kinase.] [le:34] [re:498] [di:direct]
24492186_f3_15	1043	3646	546	182	113	2.90E−05	[ac:c69796] [pn:conserved hypothetical protein yesl] [gn:yesl] [or: bacillus subtilis ]
							[db:pir]
24492187_f3_19	1044	3647	456	151	212	7.20E−17	[ac:p25744] [gn:ycee] [or: escherichia coli ] [de:hypothetical 43.9 kd protein in msyb-
							htrb intergenic region (orf1)] [sp:p25744] [db:swissprot]
24492635_c2_11	1045	3648	585	194	545	1.00E−52	[ac:g69626] [pn:ribosome recycling factor frr] [gn:frr] [or: bacillus subtilis ] [db:pir]
24492943_c3_35	1046	3649	357	118	299	1.20E−26	[ln:lclact] [ac:z80834] [pn:lacf] [gn:lacf] [fn:eiia lactose pts] [or: lactobacillus casei ]
							[db:genpept-bct] [de: l.casei lact gene.] [le:<4723] [re:5065] [di:direct]
24495262_f2_22	1047	3650	849	282	777	2.70E−77	[ac:p46919] [gn:gpsa:glyc] [or: bacillus subtilis ] [ec:1.1.1.94] [de:dependent
							dihydroxyacetone-phosphate reductase)] [sp:p46919] [db:swissprot]
24495313_c2_48	1048	3651	273	91	195	1.30E−15	[ac:p21335] [gn:yaaj] [or: bacillus subtilis ] [de:hypothetical 17.8 kd protein in sers-dnah
							intergenic region] [sp:p21335] [db:swissprot]
24495437_c1_44	1049	3652	267	88	79	0.022	[ac:b69200] [pn:hypothetical protein mth749] [gn:mth749] [or: methanobacterium
							thermoautotrophicum ] [db:pir]
24495933_f2_29	1050	3653	606	201	92	0.075	[ln:ae000789] [ac:ae000789] [pn: b. burgdorferi predicted coding region bbi16]
							[gn:bbi16] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi plasmid lp28-4, complete plasmid sequence.] [nt:hypothetical
							protein;
24495937_f1_12	1051	3654	297	98	195	1.30E−15	[ac:p39302] [gn:sgab] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69)] [sp:p39302]
							[db:swissprot]
24495949_c1_8	1052	3655	682	227	412	1.30E−38	[ac:s74902] [pn:water channel protein:protein slr2057:protein slr2057] [gn:apqz]
							[or:synechocystis sp.] [sr:pcc 6803, , pcc 6803] [sr:pcc 6803,] [db:pir]
24501535_f3_8	1053	3656	1260	419	1469	1.30E−150	[ac:p42020] [gn:pept] [or: lactococcus lactis ] [sr:,subspcremoris: streptococcus cremoris ]
							[ec:3.4.11.—] [de:peptidase t, (aminotripeptidase) (tripeptidase)] [sp:p42020]
							[db:swissprot]
24501713_f3_21	1054	3657	792	263	184	1.80E−12	[ac:a69745] [pn:hypothetical protein ybbr] [gn:ybbr] [or: bacillus subtilis ] [db:pir]
24507762_c2_74	1055	3658	477	158	361	3.20E−33	[ac:p37437] [gn:rpli] [or: bacillus subtilis ] [de:50s ribosomal protein 19 (b117)]
							[sp:p37437] [db:swissprot]
24507825_f2_31	1056	3659	1566	521	512	3.20E−49	[ac:c64739:s45224] [pn:hypothetical protein (heml-pfs intergenic region)] [gn:yadq]
							[or: escherichia coli ] [db:pir]
24508553_f1_12	1057	3660	1269	422	2052	2.10E−212	[ac:p54184] [gn:cina] [or: streptococcus pneumoniae ] [de:putative competence-damage
							protein] [sp:p54184] [db:swissprot]
24509712_f1_10	1058	3661	204	67	69	0.13	[ln:cloermq] [ac:122689] [pn:23s rrna methlyase] [gn:ermq] [fn:erythromycin resistance
							determinant] [or: clostridium perfringens ] [sr: clostridium perfringens (strain jir100) dna]
							[db:genpept-bct] [de: clostridium perfringens macrolide-lincosamide-streptogra
24511628_c3_11	1059	3662	246	81	142	1.40E−09	[ac:p54721] [gn:yfie] [or: bacillus subtilis ] [de:hypothetical 31.5 kd protein in glvbc
							3′region] [sp:p54721] [db:swissprot]
245187_f3_23	1060	3663	270	89	100	1.50E−05	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
245443_f2_8	1061	3664	660	219	413	2.50E−41	[ln:rsu53327] [ac:u53327] [pn:nodi] [gn:nodi] [or:rhizobium sp.] [db:genpept-bct]
							[de:rhizobium sp. orfz, noda, nodf, node, nodg, nodb, nodc, nodi, nodj, nodh, nodp, and
							nodq genes, complete cds.] [le:9536] [re:10450] [di:direct]
24610017_c2_58	1062	3665	393	130	89	0.00045	[ln:ehy14328] [ac:y14328] [pn:3e1 protein] [or: entamoeba histolytica ] [db:genpept-inv]
							[de: entamoeba histolytica mrna for 3e1 protein.] [le:32] [re:418] [di:direct]
24610312_f1_3	1063	3666	537	178	601	1.20E−58	[ac:b69587] [pn:adenine phosphoribosyltransferase apt] [gn:apt] [or: bacillus subtilis ]
							[db:pir]
24611566_f1_2	1064	3667	192	63	48	0.29	[ln:atu97224] [ac:u97224] [pn:disease resistance protein homolog] [gn:pnd14]
							[or: arabidopsis thaliana ] [sr: thale cress ] [db:genpept-pln] [de: arabidopsis thaliana
							disease resistance protein homolog (pnd14)gene, partial cds.] [le:<1] [re:
24611641_f2_23	1065	3668	195	64	90	0.00017	[ac:p54510] [gn:yqhl] [or: bacillus subtilis ] [de:hypothetical 14.6 kd protein in gcvt-
							spoiiiaa intergenic region] [sp:p54510] [db:swissprot]
24611641_f3_28	1066	3669	528	175	231	1.90E−19	[ln:strhexb] [ac:m29686] [pn:unknown protein] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (clone: psp(8,41).) dna] [db:genpept-bct]
							[de: s.pneumoniae mismatch repair (hexb) gene, complete cds.] [nt:orf; putative] [le:<1]
							[re:144] [di:complem
24611666_f2_7	1067	3670	420	139	112	7.90E−07	[ac:s31840] [pn:probable transposase] [or: bacillus stearothermophilus ] [db:pir]
24611666_f1_52	1068	3671	687	228	368	5.90E−34	[ac:p54501] [gn:yqgx] [or: bacillus subtilis ] [de:hypothetical 23.2 kd protein in soda-
							comga intergenic region] [sp:p54501] [db:swissprot]
24612628_c1_17	1069	3672	237	78	129	1.20E−08	[ln:smu75483] [ac:u75483] [pn:sakacin a production response regulator] [gn:sapr]
							[or: streptococcus mutans ] [db:genpept-bct] [de: streptococcus mutans putative sakacin a
							production responseregulator (sapr) gene, partial cds.] [le:1] [re:
24612700_f1_14	1070	3673	192	63	65	0.11	[ac:p49108] [gn:psbr] [or: brassica campestris ] [sr:,field mustard] [de:photosystem ii 10
							kd polypeptide precursor] [sp:p49108] [db:swissprot]
24616250_c3_45	1071	3674	192	63	147	2.30E−09	[ac:q28279] [gn:cncg1:cncg] [or: canis familiaris ] [sr:,dog] [de:1) (cng-1) (cng1)]
							[sp:q28279] [db:swissprot]
24635412_f3_29	1072	3675	252	83	185	1.40E−14	[ln:sau96620] [ac:u96620] [pn:ribosomal protein 130] [gn:130] [or: staphylococcus
							aureus ] [db:genpept-bct] [de: staphylococcus aureus nctc 8325 ribosomal protein 130
							(130),ribosomal protein 115 (115) and secy (secy) genes, complete cds.] [le:65] [re:244]
							[d
24640712_c2_31	1073	3676	5310	1769	1762	1.10E−181	[ln:spdexcap] [ac:z47210] [gn:orf] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae dexb, cap3a, cap3b and cap3c genes and orfs.] [le:12671] [re:13792]
							[di:direct]
24641252_c1_15	1074	3677	1857	618	1240	2.30E−126	[ac:p39853] [gn:capd] [or: staphylococcus aureus ] [de:capd protein] [sp:p39853]
							[db:swissprot]
24641385_f2_6	1075	3678	1314	437	2176	1.50E−225	[ac:q04698] [gn:malc] [or: streptococcus pneumoniae ] [de:maltodextrin transport system
							permease protein malc] [sp:q04698] [db:swissprot]
24641537_f3_5	1076	3679	657	218	235	7.30E−20	[ln:llu81489] [ac:u81489] [pn:histidine kinase] [gn:llkineorf2] [or: lactococcus lactis
							cremoris ] [db:genpept-bct] [de: lactococcus lactis subsp cremoris mg1363 histidine
							kinase(llkineorf2) gene, complete cds.] [le:1] [re:657] [di:direct]
24642012_f2_23	1077	3680	363	120	72	0.56	[ln:ae000788] [ac:ae000788] [pn:outer membrane protein] [gn:bbk53] [or: borrelia
							burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct] [de: borrelia burgdorferi
							plasmid lp36, complete plasmid sequence.] [nt:similar to gb:131615 gb:131418
							pid:520783] [l
24642157_f1_1	1078	3681	246	81	208	9.20E−17	[ac:q07636] [gn:pfka:pfk] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.7.1.11] [de:(phosphohexokinase)] [sp:q07636] [db:swissprot]
24642163_c1_23	1079	3682	468	155	164	2.40E−12	[ac:p20298] [or: pyrococcus woesei ] [de:hypothetical protein in gapdh 3′region (orf x)
							(fragment)] [sp:p20298] [db:swissprot]
24642802_f2_12	1080	3683	492	163	275	4.20E−24	[ac:s74334] [pn:biotin carboxyl carrier protein:hypothetical protein slr0435:hypothetical
							protein slr0435] [gn:accb] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803] [sr:pcc 6803,
							] [db:pir]
24642817_c3_84	1081	3684	1305	434	688	7.20E−68	[ac:p39145] [gn:comfa:comfl] [or: bacillus subtilis ] [de:comf operon protein 1]
							[sp:p39145] [db:swissprot]
24642817_f1_5	1082	3685	942	313	130	3.70E−15	[ac:e65017] [pn:hypothetical protein b2430] [or: escherichia coli ] [db:pir]
24643951_f3_15	1083	3686	483	160	81	0.0023	[ac:s26352] [pn:hypothetical protein] [or: staphylococcus aureus ] [db:pir]
24646880_c3_74	1084	3687	1965	654	1985	2.60E−205	[ac:p46469] [gn:ftsh:tma] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:3.4.24.—] [de:cell division protein ftsh homolog,] [sp:p46469] [db:swissprot]
24647061_f2_9	1085	3688	645	214	742	1.40E−73	[ac:q45486] [gn:yzdd] [or: bacillus subtilis ] [de:pet112-like protein] [sp:q45486]
							[db:swissprot]
24647131_c2_77	1086	3689	1299	432	2159	9.60E−224	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
24647187_c2_109	1087	3690	1281	426	825	2.20E−82	[ac:g69466] [pn:3-hydroxy-3-methylglutaryl-coenzyme a reductase (mvaa) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
24647187_f3_16	1088	3691	840	279	1375	1.10E−140	[ln:spu43526] [ac:u43526] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae neuraminidase b (nanb) gene, complete cds,and
							neuraminidase (nana) gene, partial cds.] [nt:orf-4] [le:4251] [re:5084] [di:direct]
24647188_c2_81	1089	3692	249	82	203	1.80E−16	[ac:s76591] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803,] [db:pir]
24647535_c1_28	1090	3693	264	87	75	0.0066	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
24647535_f1_1	1091	3694	246	81	62	0.15	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
24647535_f1_7	1092	3695	183	60	67	0.067	[ln:hpu31786] [ac:u31786] [pn:transforming protein e6] [gn:e6] [or: human
							papillomavirus type 37] [db:genpept-vrl] [de: human papillomavirus type 37, complete
							genome.] [nt:putative] [le:200] [re:625] [di:direct]
24647535_f2_23	1093	3696	339	112	89	0.0011	[ac:g02026] [pn:mdm2-a] [gn:mdm2] [or: homo sapiens ] [sr:, man] [db:pir]
24647535_f2_4	1094	3697	369	122	60	0.27	[ac:p80349] [or: rattus norvegicus ] [sr:,rat] [de:fuctinin 3 (fucosyltransferase inhibitor 3)
							(fragment)] [sp:p80349] [db:swissprot]
24647535_f3_47	1095	3698	213	70	64	0.092	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
24648276_f3_5	1096	3699	456	151	310	8.20E−28	[ac:h69773] [pn:conserved hypothetical protein ydck] [gn:ydck] [or: bacillus subtilis ]
							[db:pir]
24649213_c1_45	1097	3700	1986	661	542	2.10E−52	[ac:f69848] [pn:transcriptional antiterminator (bglg famil) homolog yjdc] [gn:yjdc]
							[or: bacillus subtilis ] [db:pir]
24650217_f2_14	1098	3701	708	235	667	1.20E−65	[ac:d69858] [pn:abc transporter (atp-binding protein) homolog ykny] [gn:ykny]
							[or: bacillus subtilis ] [db:pir]
24650828_c3_61	1099	3702	1113	370	120	0.00076	[ac:p32653] [gn:mrp] [or: streptococcus suis ] [de:muramidase-released protein precursor
							(136 kd surface protein)] [sp:p32653] [db:swissprot]
24651436_f3_9	1100	3703	1149	382	332	1.40E−46	[ac:o08327] [gn:glgd] [or: bacillus stearothermophilus ] [de:glycogen biosynthesis
							protein glgd] [sp:o08327] [db:swissprot]
24651515_f1_14	1101	3704	711	236	698	6.30E−69	[ac:p44989] [gn:sgbe:hi1025] [or: haemophilus influenzae ] [ec:5.1.—.—] [de:probable
							sugar isomerase sgbe,] [sp:p44989] [db:swissprot]
24651537_f2_7	1102	3705	2166	721	3725	0	[ac:q04707] [gn:pona:exp2] [or: streptococcus pneumoniae ] [de:penicillin-binding
							protein 1a (pbp-1a)] [sp:q04707] [db:swissprot]
24651587_c1_26	1103	3706	948	315	565	7.80E−55	[ln:lsexogc] [ac:x98238] [or: lactobacillus sake ] [db:genpept-bct] [de: l.sake gene
							cluster.] [nt:orf2] [le:4484] [re:5335] [di:direct]
24663437_f3 — 14	1104	3707	933	310	366	9.60E−34	[ac:q01625] [gn:spoiiij] [or: bacillus subtilis ] [de:stage iii sporulation protein j
							precursor] [sp:q01625] [db:swissprot]
24665927_f2_31	1105	3708	921	306	546	8.10E−53	[ac:g69989] [pn:abc transporter (permease) homolog ytcp] [gn:ytcp] [or: bacillus
							subtilis ] [db:pir]
24666026_f3_5	1106	3709	639	212	127	5.70E−06	[ac:p44747] [gn:tyrp-b:hi0528] [or: haemophilus influenzae ] [de:tyrosine-specific
							transport protein 2 (tyrosine permease 2)] [sp:p44747] [db:swissprot]
24688160_c1_37	1107	3710	246	81	269	1.80E−23	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
24688160_f2_5	1108	3711	201	66	138	1.40E−09	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
24693751_f1_7	1109	3712	1461	486	2363	2.30E−245	[ln:spu43526] [ac:u43526] [pn:neuraminidase b] [gn:nanb] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae neuraminidase b (nanb)
							gene, complete cds,and neuraminidase (nana) gene, partial cds.] [nt:nanb] [le:5102]
							[re:7195] [di:d
24695252_c3_52	1110	3713	1071	356	952	7.70E−96	[ln:sasoda] [ac:y12224] [pn:hypothetical protein] [or: streptococcus agalactiae ]
							[db:genpept-bct] [de: s.agalactiae soda gene.] [nt:hologous to yqen protein of b.subtilis ]
							[le:743] [re:1780] [di:direct]
24703186_f3_9	1111	3714	354	117	101	2.60E−06	[ac:p55643] [gn:y4rj] [or:rhizobium sp] [sr:ngr234,] [de:putative transposase y4rj]
							[sp:p55643] [db:swissprot]
24720077_c1_48	1112	3715	456	151	74	0.73	[ln:cer05d7] [ac:z81105] [pn:r05d7.1] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid r05d7, complete sequence.]
							[le:33022:33231:33575:34088] [re:33156:33296:33818:34188] [di:directjoin]
24722175_f1_4	1113	3716	570	189	706	9.00E−70	[ac:p08895] [gn:rple] [or: bacillus stearothermophilus ] [de:50s ribosomal protein 15]
							[sp:p08895] [db:swissprot]
24727213_c3_21	1114	3717	609	202	373	1.70E−34	[ac:e69702] [pn:holliday junction dna helicase ruva] [gn:ruva] [or: bacillus subtilis ]
							[db:pir]
24728465_f2_16	1115	3718	1005	334	218	1.20E−16	[ln:hau70664] [ac:u70664] [pn:2-keto-3-deoxygluconate kinase] [or: haloferax alicantei ]
							[db:genpept-bct] [de: haloferax alicantei 2-dehydro-3-deoxyphosphogluconate aldolase,2
							keto-3-deoxygluconate kinase, beta-d-galactosidase (bgah) genes,complete cds, and
24734401_f1_3	1116	3719	975	324	1246	5.40E−127	[ln:sgu81957] [ac:u81957] [pn:putative abc transporter subunit comya] [gn:comya]
							[or: streptococcus gordonii ] [db:genpept-bct] [de: streptococcus gordonii rna polymerase
							beta' subunit (rpoc),putative dna binding protein, putative abc transporter subunitcomy
24742877_f2_40	1117	3720	1341	446	385	9.30E−36	[ac:q47745] [gn:vansb] [or: enterococcus faecalis ] [sr:, streptococcus faecalis ] [ec:2.7.3.—
							] [de:protein vansb) (vancomycin histidine protein kinase)] [sp:q47745] [db:swissprot]
24744442_c2_13	1118	3721	1560	520	269	3.70E−20	[ln:celzk84] [ac:u23181] [gn:zk84.1] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid zk84.]
							[nt:final exon in repeat region; similar to long tandem] [le:24170:24288:24411:24654]
24782802_c2_28	1119	3722	1386	461	890	2.80E−89	[ac:f69906] [pn:conserved hypothetical protein yoji] [gn:yoji] [or: bacillus subtilis ]
							[db:pir]
24785712_f3_14	1120	3723	1029	342	1105	4.70E−112	[ac:p54322] [gn:pyrdb] [or: lactococcus lactis ] [sr:,subspcremoris: streptococcus
							cremoris ] [ec:1.3.3.1] [de:(dhodehase b) (dhodb)] [sp:p54322] [db:swissprot]
24787375_c2_10	1121	3724	219	72	102	9.00E−06	[ac:p55614] [gn:y4pe,y4sa] [or:rhizobium sp] [sr:ngr234,] [de:hypothetical 15.5 kd
							protein y4pc/y4sa] [sp:p55614] [db:swissprot]
24787590_f1_4	1122	3725	1305	434	262	1.20E−20	[ac:p47394] [gn:mg148] [or: mycoplasma genitalium ] [de:hypothetical protein mg148]
							[sp:p47394] [db:swissprot]
24798437_c2_68	1123	3726	660	219	244	1.40E−20	[ac:f64500] [pn:lps biosynthesis related rfbu-protein homolog] [or: methanococcus
							jannaschii ] [db:pir] [mp:for1581714-1582886]
24798452_c3_6	1124	3727	309	102	400	5.40E−37	[ac:a41971:a60282:a33134] [pn:surface protein pspa precursor:pneumococcal surface
							protein a] [gn:pspa] [cl:cpl repeat homology] [or: streptococcus pneumoniae ] [db:pir]
24799192_c2_198	1125	3728	6372	2123	285	1.10E−19	[ln:u88974] [ac:u88974] [pn:orf45] [or: streptococcus thermophilus ] [db:genpept-bct]
							[de: streptococcus thermophilus bacteriophage 01205 dna sequence.] [le:33448]
							[re:35979] [di:direct]
24802312_c1_49	1126	3729	981	326	816	2.00E−81	[ac:i40790] [pn:tpp-dependent acetoin dehydrogenase alpha chain] [or: clostridium
							magnum ] [db:pir]
24802327_c1_9	1127	3730	951	316	233	3.00E−19	[ac:q58902] [gn:mj1507] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj1507] [sp:q58902] [db:swissprot]
24803256_f2_4	1128	3731	387	128	410	2.10E−38	[ln:llu74322] [ac:u74322] [pn:6-phosphogluconate dehydrogenase] [or: lactococcus
							lactis ] [db:genpept-bct] [ec:1.1.1.44] [de: lactococcus lactis 6-phosphogluconate
							dehydrogenase gene, completecds, and potassium transporter homolog gene, partial
							cds.] [le:898
24803312_c1_33	1129	3732	1515	504	479	1.00E−45	[ac:i41293] [pn:ecoe type i restriction modification enzyme m subunit] [or: escherichia
							coli ] [db:pir]
24803325_c3_31	1130	3733	2145	714	119	1.60E−05	[ac:p15293] [gn:prt] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:3.4.21.—] [de:proteinase) (lp151)] [sp:p15293] [db:swissprot]
24803767_c2_101	1131	3734	393	130	87	0.071	[ac:p40534] [gn:yil037c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 75.0 kd protein in not3-cka1 intergenic region] [sp:p40534]
							[db:swissprot]
24804557_f2_29	1132	3735	477	158	338	8.90E−31	[ac:c69786] [pn:conserved hypothetical protein ydib] [gn:ydib] [or: bacillus subtilis ]
							[db:pir]
24804637_f2_25	1133	3736	1722	573	322	4.70E−26	[ln:bsu18943] [ac:u18943:x99465] [gn:mtlr] [or: bacillus stearothermophilus ]
							[db:genpept-bct] [de: bacillus stearothermophilus mannitol transport protein
							(mtla),putative transcriptional regulator (mtlr), mannitol enzyme iia(mtlf) and mannitol-
							1-phosphate de
24804642_c2_191	1134	3737	282	93	73	0.017	[ln:spu28142] [ac:u28142] [pn:emml2(a207)] [gn:emml2(a207)] [or: streptococcus
							pyogenes ] [db:genpept-bct] [de: streptococcus pyogenes igg3-binding protein
							(emml2(a207)) gene,partial cds.] [nt:igg3-binding protein] [le:1] [re:
24805175_f2_8	1135	3738	912	303	842	3.50E−84	[ac:p46340] [gn:yqgi] [or: bacillus subtilis ] [de:region (orf73)] [sp:p46340]
							[db:swissprot]
24806253_f1_8	1136	3739	375	124	268	2.30E−23	[ac:i40436:s24669:jq1214:s18072] [pn:ribonuclease p, protein component
							homolog:rnpa homolog] [gn:rnpa] [or: bacillus subtilis ] [ec:3.1.26.5] [db:pir]
24806326_f3_18	1137	3740	750	249	560	2.70E−54	[ac:p32719] [gn:yjcu] [or: escherichia coli ] [de:hypothetical 26.1 kd protein in fdhf-phnp
							intergenic region (f231)] [sp:p32719] [db:swissprot]
24806532_f1_1	1138	3741	465	154	80	0.19	[ln:ae000791] [ac:ae000791] [pn:conserved hypothetical protein] [gn:bbc03]
							[or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct] [de: borrelia
							burgdorferi plasmid cp9, complete plasmid sequence.] [nt:similar to gb:u03641
24806588_f3_13	1139	3742	297	98	75	0.041	[ac:b69588] [pn:1-arabinose transport (integral membrane protein) arap] [gn:arap]
							[or: bacillus subtilis ] [db:pir]
24806592_c2_190	1140	3743	1407	468	179	2.30E−11	[ln:u88974] [ac:u88974] [pn:orf28] [or: streptococcus thermophilus ] [db:genpept-bct]
							[de: streptococcus thermophilus bacteriophage 01205 dna sequence.] [le:17062]
							[re:17955] [di:direct]
24807637_c1_9	1141	3744	231	76	58	0.34	[ln:ecseraici] [ac:x66836] [pn:phosphoglycerate dehydrogenase] [gn:sera]
							[or: escherichia coli ] [db:genpept-bct] [ec:1.1.1.95] [de: e.coli sera, icia, sbm genes and
							two open reading frames.] [nt:partial of sera orf] [sp:p08328] [le:<1] [re:298]
24807967_c1_48	1142	3745	894	297	408	1.20E−37	[ac:h69828] [pn:abc transporter (atp-binding protein) homolog yheh] [gn:yheh]
							[or: bacillus subtilis ] [db:pir]
24812552_c3_15	1143	3746	249	82	71	0.07	[ac:pc2022] [pn:mucin like protein muc2 precursor:apoprotein] [gn:muc2] [or: rattus
							norvegicus ] [sr:,norway rat] [db:pir] [mp:1]
24821000_c3_44	1144	3747	1215	404	113	0.0023	[ln:bcy11138] [ac:y11138] [gn:orf1] [or: bacillus cereus ] [db:genpept-bct] [de: b.cereus
							dna for orf1, orf2 and orf3 (2402 bp).] [nt:shows weak homology to c. elegans cosmid
							c33a12 orf] [le:156] [re:1373] [di:direct]
24821887_c3_39	1145	3748	696	231	457	2.20E−43	[ac:d69780] [pn:hypothetical protein ydff] [gn:ydff] [or: bacillus subtilis ] [db:pir]
24823385_f2_3	1146	3749	861	286	401	1.90E−37	[ac:e70006] [pn:bacitracin resistance protein (undecapreno) homolog yubb] [gn:yubb]
							[or: bacillus subtilis ] [db:pir]
24823385_f3_18	1147	3750	906	301	809	1.10E−80	[ac:o06973] [gn:yvcj] [or: bacillus subtilis ] [de:hypothetical 33.9 kd protein in crh-trxb
							intergenic region] [sp:o06973] [db:swissprot]
24823412_f3_52	1148	3751	711	236	574	8.70E−56	[ac:p40586] [gn:yir042c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 27.4 kd protein in hyr1 3′region] [sp:p40586] [db:swissprot]
24823432_f1_12	1149	3752	1053	350	86	0.034	[ac:b90383:b92077:a93813:a00171] [pn:cytochrome b5] [cl:cytochrome b5:cytochrome
							b5 core homology] [or: sus scrofa domestica] [sr:, domestic pig] [db:pir]
24823437_f2_17	1150	3753	546	181	93	0.038	[ac:c64674] [pn:conserved hypothetical integral membrane protein hp1235]
							[or: helicobacter pylori ] [db:pir]
24823437_f3_34	1151	3754	651	216	128	1.10E−06	[ln:af016048] [ac:af016048] [pn:platelet-activating factor acetylhydrolase alpha]
							[gn:paf-ah alpha 2] [or: rattus norvegicus ] [sr:norway rat] [db:genpept-rod] [de: rattus
							norvegicus platelet-activating factor acetylhydrolase alpha2 subunit (paf-ah alpha 2)
24823438_f2_37	1152	3755	633	210	486	1.80E−46	[ac:e53402] [pn:serine o-acetyltransferase,] [cl:galactoside acetyltransferase]
							[or: bacillus stearothermophilus ] [ec:2.3.1.30] [db:pir]
24845177_f2_30	1153	3756	798	265	624	4.40E−61	[ac:c69693] [pn:ribonuclease h rnh] [gn:rnh] [or: bacillus subtilis ] [db:pir]
24846126_f1_2	1154	3757	391	131	123	1.00E−06	[ln:mtv041] [ac:al021958] [pn:pgrs-family protein] [gn:mtv041.20] [or: mycobacterium
							tuberculosis ] [db:genpept] [de: mycobacterium tuberculosis sequence v041.]
							[nt:mtv041.20, len:783, member of pgrs family of] [le:15587] [re:17938] [di:direct]
24852193_c2_39	1155	3758	360	119	290	1.10E−25	[ln:spac29b12] [ac:z99164] [pn:hypothetical protein] [gn:spac29b12.12]
							[or: schizosaccharomyces pombe ] [sr:fission yeast] [db:genpept-pln] [de: s.pombe
							chromosome i cosmid c29b12.] [nt:spac29b12.12, unknown, len:113aa, similar eg. to]
							[le:31870] [re:32211]
24853530_f1_2	1156	3759	189	62	54	0.67	[ac:p20318] [gn:4.5] [or:bacteriophage t3] [de:gene 4.5 protein] [sp:p20318]
							[db:swissprot]
24867750_c2_18	1157	3760	747	248	556	7.00E−54	[ac:h70023] [pn:n-acetyl-glucosamine catabolism homolog yutf] [gn:yutf] [or: bacillus
							subtilis ] [db:pir]
24875936_f1_6	1158	3761	216	71	66	0.12	[ac:s46447:s53827] [pn:ymf48 protein] [or: mitochondrion acanthamoeba castellanii ]
							[db:pir]
24877193_c2_41	1159	3762	975	324	1132	6.50E−115	[ac:d70008] [pn:nicotinate phosphoribosyltransferase homolog yuek] [gn:yuek]
							[or: bacillus subtilis ] [db:pir]
24877262_c2_108	1160	3763	2250	749	3049	0	[ac:q54089] [gn:rela:rel] [or: streptococcus equisimilis ] [ec:2.7.6.5] [de:protein)]
							[sp:q54089] [db:swissprot]
24879377_c1_11	1161	3764	564	188	809	1.10E−80	[ac:q03158] [gn:enda] [or: streptococcus pneumoniae ] [ec:3.1.30.—] [de:dna-entry
							nuclease (competence-specific nuclease),] [sp:q03158] [db:swissprot]
24880000_f2_4	1162	3765	513	170	527	8.30E−51	[ac:p23496] [gn:lacx] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[de:lacx protein, plasmid] [sp:p23496] [db:swissprot]
24880258_c3_54	1163	3766	1410	469	520	4.60E−50	[ac:b69271] [pn:hypothetical protein af0170] [or: archaeoglobus fulgidus ] [db:pir]
24882217_f2_13	1164	3767	495	164	254	7.10E−22	[ln:sesirr] [ac:x99128] [pn:putative iron dependant repressor] [gn:sirr]
							[or: staphylococcus epidermidis ] [db:genpept-bct] [de: s.epidermidis sirr gene.] [le:14]
							[re:658] [di:direct]
24882888_f2_4	1165	3768	324	107	190	4.30E−15	[ac:p24281] [gn:yaak] [or: bacillus subtilis ] [de:hypothetical 11.8 kd protein in dnaz-recr
							intergenic region] [sp:p24281] [db:swissprot]
24882927_f3_41	1166	3769	249	82	111	1.00E−06	[ac:d69871] [pn:hypothetical protein ykzg] [gn:ykzg] [or: bacillus subtilis ] [db:pir]
24883437_f3_12	1167	3770	1158	385	866	9.90E−87	[ln:ae001165] [ac:ae001165:ae000783] [pn:spermidine/putrescine abc transporter,]
							[gn:bb0642] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 51 of 70) of the complete genome.] [nt:similar to
							gb:m64
24884842_c3_52	1168	3771	996	332	457	2.20E−43	[ln:lacals] [ac:116975] [or: lactococcus lactis ] [sr: lactococcus lactis (strain dsm 20384,
							sub_species lactis ) dna] [db:genpept-bct] [de: lactococcus lactis alpha-acetolactate
							synthase (als) gene, completecds.] [nt:orf1] [le:28] [re:1077] [di:direct]
24885937_f1_3	1169	3772	1182	393	743	1.10E−73	[ac:p42907] [gn:agas] [or: escherichia coli ] [de:agas protein] [sp:p42907] [db:swissprot]
24886250_c3_35	1170	3773	186	61	51	0.048	[ln:af026542] [ac:af026542:111653] [pn:scne] [gn:scne] [or: streptococcus pyogenes ]
							[db:genpept-bct] [de: streptococcus pyogenes ff22 lantibiotic (scn) gene cluster
							regioncontaining:scnk, scnr, streptococcin a-ff22 precursor (scna),scna1, scnm, scnt,
							scnf,
24886552_f2_21	1171	3774	1005	334	178	2.20E−13	[ln:mtv028] [ac:al021426] [pn:hypothetical protein mtv028.11c] [gn:mtv028.11c]
							[or: mycobacterium tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis
							sequence v028.] [nt:mtv028.11c, unknown, len:187; similar to jag_bacsu] [le:9544]
							[re:10107] [d
24886557_f2_27	1172	3775	870	289	144	9.90E−08	[ac:c69465] [pn:dinitrogenase reductase activating glycohydrolase (drag) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
24886563_f3_24	1173	3776	1278	425	536	9.30E−52	[ln:bs43kbdna] [ac:aj223978] [pn:yvrn protein] [gn:yvrn] [or: bacillus subtilis ]
							[db:genpept-bct] [de: bacillus subtilis 42.7kb dna fragment from yvsa to yvqa.]
							[le:14847] [re:16097] [di:direct]
24890775_f1_4	1174	3777	363	120	524	1.70E−50	[ln:sppbp2bh] [ac:z21808] [pn:internal region of the penicillin-binding] [fn:penicillin-
							resistantance] [or: streptococcus pneumoniae ] [db:genpept-bct] [de: s.pneumoniae of pbp
							2b gene internal region of thepenicillin-binding protein 2b gene.] [nt:sequence i
24897550_c2_18	1175	3778	516	171	70	0.05	[ln:scu10280] [ac:u10280] [pn:mkk2p] [gn:mkk2] [fn:protein kinase]
							[or: saccharomyces cerevisiae ] [sr:baker's yeast] [db:genpept-pln] [de: saccharomyces
							cerevisiae ume1p (ume1) and mkk2p (mkk2) genes,complete cds.] [le:2804] [re:
24901567_f3_22	1176	3779	645	214	683	2.50E−67	[ac:p28601] [gn:rpld] [or: bacillus stearothermophilus ] [de:50s ribosomal protein 14]
							[sp:p28601] [db:swissprot]
24901577_c2_5	1177	3780	195	64	94	0.00024	[ac:o05732] [gn:hp0888] [or: helicobacter pylori ] [sr:, campylobacter pylori ]
							[de:probable iron chelatin transport atp-binding protein hp0888] [sp:o05732]
2535252_f1_11	1178	3781	249	82	74	0.15	[ac:g64502] [pn:hypothetical protein mj1626] [or: methanococcus jannaschii ] [db:pir]
							[mp:rev1602382-1600085]
2538338_f3_35	1179	3782	288	95	294	4.10E−26	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
2538901_c3_29	1180	3783	321	106	153	1.10E−09	[ac:jq0406] [pn:hypothetical protein 1246 (uvra region)] [or: micrococcus
							luteus : micrococcus lysodeikticus ] [db:pir]
25391025_c3_41	1181	3784	192	63	47	0.81	[ln:d89252] [ac:d89252] [or: schizosaccharomyces pombe ] [sr: schizosaccharomyces
							pombe (strain:pr745) cdna to mrna] [db:genpept-pln] [de:fission yeast mrna, partial
							cds.] [nt:similar to saccharomyces cerevisiae myo-inositol] [le:<1] [re:1131] [di:direct]
25392877_c2_15	1182	3785	666	221	797	2.00E−79	[ac:q01328] [gn:pcp] [or: streptococcus pyogenes ] [ec:3.4.19.3] [de:peptidase)
							(pyroglutamyl-peptidase i)] [sp:q01328] [db:swissprot]
25397512_f3_55	1183	3786	411	136	170	1.60E−12	[ac:p36944:p96734] [gn:rbsr] [or: bacillus subtilis ] [de:ribose operon repressor]
							[sp:p36944:p96734] [db:swissprot]
25398427_f2_6	1184	3787	303	100	210	3.30E−17	[ac:e69894] [pn:hypothetical protein ynzc] [gn:ynzc] [or: bacillus subtilis ] [db:pir]
25398442_f1_3	1185	3788	1536	511	2221	2.60E−230	[ln:ab009314] [ac:ab009314] [pn:proton-translocating atpase, alpha subunit] [gn:atpa]
							[or: streptococcus bovis ] [sr: streptococcus bovis (strain:jb-1) dna] [db:genpept-bct]
							[de: streptococcus bovis gene for proton-translocating atpase subunits,complete cds.]
25399053_c3_98	1186	3789	237	78	70	0.26	[ln:gacadsynh] [ac:x96429] [pn:(+)-delta-cadinene synthase] [gn:cad1-a] [or: gossypium
							arboreum ] [db:genpept-pln] [de: g.arboreum mrna for cadinene synthase.] [le:97]
							[re:1764] [di:direct]
25402202_c1_16	1187	3790	897	298	581	1.60E−56	[ac:g69844] [pn:conserved hypothetical protein yjbo] [gn:yjbo] [or: bacillus subtilis ]
							[db:pir]
25406251_c1_57	1188	3791	321	106	80	0.0019	[ac:p16517] [gn:16.7] [or:bacteriophage phi-29] [de:early protein gp16.7] [sp:p16517]
							[db:swissprot]
25414692_c1_32	1189	3792	774	257	400	2.40E−37	[ac:c69995] [pn:anion transport abc transporter (atp-bindi) homolog ytlc] [gn:ytlc]
							[or: bacillus subtilis ] [db:pir]
25415917_c1_24	1190	3793	978	325	407	4.30E−38	[ac:p42422] [gn:yxdk:b65e] [or: bacillus subtilis ] [ec:2.7.3.—] [de:(ec 2.7.3.—)]
							[sp:p42422] [db:swissprot]
25428328_f3_30	1191	3794	1068	355	1074	9.00E−109	[ac:o06940] [gn:hrca] [or: streptococcus mutans ] [de:heat-inducible transcription
							repressor hrca] [sp:o06940] [db:swissprot]
25428775_f2_14	1192	3795	801	266	588	2.90E−57	[ac:p39345] [gn:yjgu] [or: escherichia coli ] [ec:1.—.—.—] [de:(ec 1.—.—.—)] [sp:p39345]
							[db:swissprot]
25429814_c2_11	1193	3796	608	202	716	7.80E−71	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
25433462_c1_163	1194	3797	324	107	82	0.0012	[ln:u88974] [ac:u88974] [pn:orf33] [or: streptococcus thermophilus ] [db:genpept-bct]
							[de: streptococcus thermophilus bacteriophage 01205 dna sequence.] [le:20355]
							[re:20693] [di:direct]
2547807_c3_9	1195	3798	327	108	363	2.00E−33	[ac:p20277] [gn:rplq] [or: bacillus subtilis ] [de:50s ribosomal protein 117 (b115) (b121)]
							[sp:p20277] [db:swissprot]
25478578_c3_37	1196	3799	228	75	192	2.60E−15	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
25487551_c1_16	1197	3800	903	300	279	1.60E−24	[ac:g64143] [pn:hypothetical protein hi0143] [or: haemophilus influenzae ] [db:pir]
25500217_f3_52	1198	3801	342	113	85	0.0081	[ln:celt09d3] [ac:u64835] [gn:t09d3.3] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid t09d3.]
							[le:12376:12981:13120] [re:12935:13074:13173] [di:complementjoin]
25511563_f1_1	1199	3802	930	309	662	4.60E−78	[ac:p08188] [gn:manz:ptsm:gptb] [or: escherichia coli ] [de:(eii-m-man)] [sp:p08188]
							[db:swissprot]
25511590_f2_23	1200	3803	696	231	212	2.40E−17	[ln:strmalr] [ac:l21856] [pn:repressor protein] [gn:malr] [fn:maltose operon
							transcriptional repressor] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae mala protein and repressor protein (malr)genes, complete
							cds.] [nt:putative
25523507_f3_7	1201	3804	1311	436	1702	2.60E−175	[ac:q59931] [gn:gapn] [or: streptococcus mutans ] [ec:1.2.1.9] [de:dehydrogenase)]
							[sp:q59931] [db:swissprot]
25526383_c1_10	1202	3805	621	206	965	3.20E−97	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
25526383_c3_15	1203	3806	621	206	961	8.50E−97	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
25526383_f1_1	1204	3807	597	198	893	1.40E−89	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
25526383_f1_2	1205	3808	255	84	356	1.10E−32	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
25526383_f2_16	1206	3809	621	206	949	1.60E−95	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
25527253_f3_4	1207	3810	1230	409	1000	6.30E−101	[ac:p50840] [gn:ypsc] [or: bacillus subtilis ] [de:hypothetical 43.5 kd protein in cotd-
							kdud intergenic region precursor] [sp:p50840] [db:swissprot]
25547942_c3_89	1208	3811	900	299	733	1.20E−72	[ac:q04873] [gn:udg] [or: salmonella typhimurium ] [ec:1.1.1.22] [de:udp-glucose 6-
							dehydrogenase, (udp-glc dehydrogenase)] [sp:q04873] [db:swissprot]
25554061_f1_1	1209	3812	627	208	617	2.40E−60	[ln:af009622] [ac:af009622] [pn:thioredoxin reductase] [gn:trxb] [or: listeria
							monocytogenes ] [db:genpept-bct] [ec:1.6.4.5] [de: listeria monocytogenes thioredoxin
							reductase (trxb) gene, completecds, and udp-galactose-4-epimerase (gale) gene, partial
							cds.]
2555437_f1_9	1210	3813	657	218	79	0.24	[ln:celc33g8] [ac:u53154] [gn:c33g8.3] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c33g8.]
							[le:27678:27899:28087] [re:27848:27952:28290] [di:directjoin]
25563925_f2_11	1211	3814	1377	458	577	4.20E−56	[ac:f69354] [pn:trk potassium uptake system protein (trka-2) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
2556462_c3_44	1212	3815	1290	429	444	5.20E−42	[ac:g64435] [pn:cobalt transport atp-binding protein o homolog] [cl:unassigned atp-
							binding cassette proteins:malk protein homology] [or: methanococcus jannaschii ]
							[db:pir] [mp:rev1027976-1027137]
25569193_f1_1	1213	3816	789	262	358	6.70E−33	[ac:p42095] [gn:yqxn:yqfi] [or: bacillus subtilis ] [de:(orf3)] [sp:p42095] [db:swissprot]
25578250_c1_21	1214	3817	294	97	74	0.07	[ac:d69689] [pn:response regulator aspartate phosphatase rapi] [gn:rapi] [or: bacillus
							subtilis ] [db:pir]
25579442_c1_9	1215	3818	294	97	135	2.90E−09	[ac:g70041] [pn:conserved hypothetical protein yvgz] [gn:yvgz] [or: bacillus subtilis ]
							[db:pir]
25586001_f3_14	1216	3819	1311	436	327	1.30E−29	[ac:q44406] [gn:xylr] [or: anaerocellum thermophilum ] [de:xylose repressor]
							[sp:q44406] [db:swissprot]
25586562_f1_15	1217	3820	657	218	528	6.50E−51	[ac:p37537] [gn:tmk] [or: bacillus subtilis ] [ec:2.7.4.9] [de:thymidylate kinase, (dtmp
							kinase)] [sp:p37537] [db:swissprot]
25586693_c1_47	1218	3821	519	172	85	0.3	[ac:g70008] [pn:nadh dehydrogenase (ubiquinone) homolog yufd] [gn:yufd] [or: bacillus
							subtilis ] [db:pir]
25588563_c3_43	1219	3822	405	134	189	5.50E−15	[ac:e69751] [pn:abc transporter (atp-binding protein) homolog ybxa] [gn:ybxa]
							[or: bacillus subtilis ] [db:pir]
25593755_c3_119	1220	3823	1131	376	241	8.10E−18	[ac:h69878] [pn:protein kinase homolog ylop] [gn:ylop] [or: bacillus subtilis ] [db:pir]
25596062_f3_40	1221	3824	228	75	65	0.16	[ac:p25146] [gn:inla] [or: listeria monocytogenes ] [de:internalin a] [sp:p25146]
							[db:swissprot]
25597250_f3_26	1222	3825	189	62	56	0.57	[ln:celb0336] [ac:u32305] [gn:b0336.8] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid b0336.]
							[le:10526:10663:10807] [re:10609:10755:10986] [di:complementjoin]
25601577_c1_141	1223	3826	1059	352	61	0.073	[ac:c22845] [pn:nadh dehydrogenase (ubiquinone), chain 4] [cl:nadh dehydrogenase
							(ubiquinone) chain 4] [or: mitochondrion trypanosoma brucei ] [ec:1.6.5.3] [db:pir]
25602312_f3_14	1224	3827	798	265	320	7.20E−29	[ac:s74821] [pn:hypothetical protein slr1742] [or:synechocystis sp.] [sr:pcc 6803, , pcc
							6803] [sr:pcc 6803,] [db:pir]
25626562_f3_17	1225	3828	402	133	392	1.70E−36	[ln:llu92974] [ac:u92974:m90760:m90761] [pn:aldr] [gn:aldr] [or: lactococcus lactis ]
							[db:genpept-bct] [de: lactococcus lactis unknown gene, partial cds, and hisc
							(hisc),unknown, hisg (hisg), unknown, hisb (hisb), unknown, hish (hish),hisa (hisa), hisf
							(hisf
25627312_f1_1	1226	3829	657	218	528	6.50E−51	[ac:a69787] [pn:hypothetical protein ydih] [gn:ydih] [or: bacillus subtilis ] [db:pir]
25630038_f1_1	1227	3830	216	71	56	0.74	[ln:arexoygen] [ac:x95394] [pn:unknown] [gn:orf1] [or: agrobacterium radiobacter ]
							[db:genpept-bct] [de: a.radiobacter exoy, alda, oata genes and orf1.] [le:3516] [re:3947]
							[di:direct]
25633390_c2_68	1228	3831	528	175	123	7.30E−08	[ac:q01467] [gn:mred:rodb] [or: bacillus subtilis ] [de:rod shape-determining protein
							mred] [sp:q01467] [db:swissprot]
25634427_f1_5	1229	3832	2562	853	4098	0	[ln:spparcetp] [ac:z67739] [pn:dna topoisomerase iv] [gn:parc] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: s.pneumoniae parc, parc and transposase genes and
							unknown orf.] [nt:parc subunit] [le:3618] [re:6089] [di:direct]
25641593_c2_18	1230	3833	600	199	397	5.00E−37	[ac:p39796] [gn:trer] [or: bacillus subtilis ] [de:trehalose operon transcriptional repressor]
							[sp:p39796] [db:swissprot]
25650267_c1_34	1231	3834	729	242	525	1.40E−50	[ac:h69979] [pn:proteinase homolog yrro] [gn:yrro] [or: bacillus subtilis ] [db:pir]
25650312_c3_38	1232	3835	198	65	68	0.31	[ln:ecu28375] [ac:u28375] [or: escherichia coli ] [db:genpept-bct] [de: escherichia coli k-
							12 genome; approximately 64 to 65 minutes.] [nt:orf_o439] [le:35581] [re:36900]
							[di:direct]
25664057_f2_8	1233	3836	381	126	438	2.20E−41	[ln:spadca] [ac:z71552] [pn:abc protein] [gn:adcc] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae adccba operon.] [le:20] [re:721]
							[di:direct]
25664061_f2_78	1234	3837	1149	382	290	2.60E−47	[ln:u93688] [ac:u93688] [pn:integrase] [gn:int] [or: staphylococcus aureus ] [db:genpept-
							bct] [de: staphylococcus aureus toxic shock syndrome toxin-1 (tst),enterotoxin (ent), and
							integrase (int) genes, complete cds.] [nt:similar to staphylococcal phage integ
25667760_f2_26	1235	3838	774	257	75	0.99	[ln:ae000789] [ac:ae000789] [pn:pfs protein (pfs)] [gn:bbi06] [or: borrelia burgdorferi ]
							[sr:lyme disease spirochete] [db:genpept-bct] [de: borrelia burgdorferi plasmid lp28-4,
							complete plasmid sequence.] [nt:similar to gb:d26562 sp:p24247 gb:m83735 pid:473
25672763_f3_5	1236	3839	744	247	89	1.30E−06	[ln:lmiap1206] [ac:x85856] [pn:invasive associated protein] [gn:iap] [or: listeria
							monocytogenes ] [db:genpept-bct] [de: l.monocytogenes type 1 partial iap gene (strain
							12067).] [nt:invades nonprofessional phagocytic cells] [le:<1] [re:
25679643_c1_35	1237	3840	375	124	61	0.22	[ac:g69441] [pn:glutaredoxin (grx-1) homolog] [or: archaeoglobus fulgidus ] [db:pir]
25683537_f3_36	1238	3841	453	150	64	0.17	[ln:mmu47023] [ac:u47023] [pn:unknown] [or: methanococcus maripaludis ]
							[db:genpept-bct] [de: methanococcus maripaludis plasmid purb500, complete genome.]
							[nt:orf-13] [le:5239] [re:5490] [di:direct]
2578200_f3_4	1239	3842	1857	618	144	3.00E−08	[ac:h64496] [pn:hypothetical protein mj1577] [or: methanococcus jannaschii ] [db:pir]
							[mp:for1552198-1553994]
25820307_c1_13	1240	3843	213	71	153	3.60E−11	[ac:q00990] [gn:rplm] [or: staphylococcus carnosus ] [de:50s ribosomal protein 113]
							[sp:q00990] [db:swissprot]
25831355_c1_3	1241	3844	474	158	657	1.40E−64	[ac:p28691] [gn:hflb:ftsh:mrsc] [or: escherichia coli ] [ec:3.4.24.—] [de:cell division
							protein ftsh,] [sp:p28691] [db:swissprot]
25832561_c1_42	1242	3845	300	99	173	2.70E−13	[ac:p39703] [gn:yal004w] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 23.8 kd protein in ssa1-cfb1 intergenic region] [sp:p39703]
							[db:swissprot]
2584687_c3_41	1243	3846	432	143	342	3.30E−31	[ln:padldh] [ac:x70925] [gn:y210] [or: pediococcus acidilactici ] [db:genpept-bct]
							[de: p.acidilactici gene for d-lactate dehydrogenase.] [le:<1] [re:637] [di:direct]
25906253_c3_2	1244	3847	402	134	104	2.10E−05	[ln:rnu63111] [ac:u63111] [pn:dentin phosphoprotein precursor] [or: rattus norvegicus ]
							[sr:norway rat] [db:genpept-rod] [de: rattus norvegicus dentin phosphoprotein precursor
							mrna, completecds.] [le:43] [re:846] [di:direct]
25908563_f2_12	1245	3848	1137	378	944	5.40E−95	[ln:af012876] [ac:af012876] [pn:homocysteine synthase] [or: schizosaccharomyces
							pombe ] [sr:fission yeast] [db:genpept-pln] [ec:4.2.99.10] [de: schizosaccharomyces
							pombe homocysteine synthase mrna, complete cds.] [le:105] [re:1394] [di:direct]
25938462_c1_22	1246	3849	1953	650	1621	9.80E−167	[ac:o05519] [gn:ydif] [or: bacillus subtilis ] [de:hypothetical abc transporter atp-binding
							protein ydif] [sp:o05519] [db:swissprot]
25973430_c1_49	1247	3850	360	119	71	0.96	[ac:a55839] [pn:transcription factor inhibitor i-kappa-b-beta] [cl:unassigned ankyrin
							repeat proteins:ankyrin repeat homology] [or: mus musculus ] [sr:, house mouse] [db:pir]
25973808_c2_4	1248	3851	666	221	498	9.80E−48	[ac:e69785] [pn:transcriptional regulator (gntr family) homolog ydhq] [gn:ydhq]
							[or: bacillus subtilis ] [db:pir]
25976525_f2_14	1249	3852	1392	463	1428	2.80E−146	[ac:b69745] [pn:phosphoglucomutase (glycolysis) homolog ybbt] [gn:ybbt] [or: bacillus
							subtilis ] [db:pir]
25992269_c2_14	1250	3853	1008	335	434	6.00E−41	[ln:spu09352] [ac:u09352] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes 42 kd protein (orf1) gene and 67 kdmyosin-crossreactive
							streptococcal antigen gene, complete cds.] [nt:orf1, putative 42 kda protein] [le:237]
							[re:1418] [di:
25995133_f2_3	1251	3854	198	65	56	0.088	[ac:s41022] [pn:hypothetical protein t07c4.9] [cl:annexin repeat homology]
							[or: caenorhabditis elegans ] [db:pir]
26015942_c3_73	1252	3855	219	72	210	3.30E−17	[ac:q02522] [gn:hpt] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.4.2.8] [de:(hgprtase)] [sp:q02522] [db:swissprot]
26018757_f2_31	1253	3856	231	76	184	1.90E−14	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
26037642_f1_1	1254	3857	939	312	655	2.30E−64	[ac:e69879] [pn:conserved hypothetical protein ylov] [gn:ylov] [or: bacillus subtilis ]
							[db:pir]
26054818_c2_5	1255	3858	1653	550	2265	5.60E−235	[ac:a41971:a60282:a33134] [pn:surface protein pspa precursor:pneumococcal surface
							protein a] [gn:pspa] [cl:cpl repeat homology] [or: streptococcus pneumoniae ] [db:pir]
26055442_c2_96	1256	3859	1389	462	1191	3.60E−121	[ln:ehy13922] [ac:y13922:y15222] [gn:ftsa] [or: enterococcus hirae ] [db:genpept-bct]
							[de: enterococcus hirae mrar, pbp3s, mray, murd, murg, ftsq and ftsagenes, mraw, yllc
							and ftsz partial genes.] [le:8960] [re:10288] [di:direct]
26069215_c3_82	1257	3860	213	70	119	8.40E−07	[ln:spcpsl4e] [ac:x85787] [gn:tasa] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae cps14 locus.] [le:12856] [re:13935] [di:direct]
26072000_f2_8	1258	3861	222	73	248	5.00E−20	[ac:a69584] [pn:alanyl-trna synthetase alas] [gn:alas] [or: bacillus subtilis ] [db:pir]
2614067_c3_42	1259	3862	267	88	219	3.60E−18	[ln:sgu57759] [ac:u57759] [pn:intrageneric coaggregation-relevant adhesin]
							[or: streptococcus gordonii ] [db:genpept-bct] [de: streptococcus gordonii intrageneric
							coaggregation-relevant adhesingene, complete cds.] [le:277] [re:1212] [di:direct]
26172500_f3_6	1260	3863	522	173	453	5.80E−43	[ac:a69637] [pn:transcription elongation factor grea] [gn:grea] [or: bacillus subtilis ]
							[db:pir]
26181517_c1_24	1261	3864	516	171	102	0.0049	[ln:celf42g9] [ac:u00051] [gn:f42g9.5] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid f42g9.]
							[nt:similar to betaine-aldehyde dehydrogenase] [le:18579:18760:18886] [re:18709:188
26181562_c2_62	1262	3865	423	140	415	6.10E−39	[ac:q02522] [gn:hpt] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.4.2.8] [de:(hgprtase)] [sp:q02522] [db:swissprot]
26189812_c3_38	1263	3866	864	287	1480	8.60E−152	[ln:af030362] [ac:af030362] [pn:dtdp-1-rhamnose synthase] [gn:cpso] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae strain sp-ga71 glucose-1-
							phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
26197087_c1_33	1264	3867	315	104	227	5.10E−19	[ac:p32728] [gn:ylxr] [or: bacillus subtilis ] [de:hypothetical 10.4 kd protein in nusa-infb
							intergenic region (orf3)] [sp:p32728] [db:swissprot]
26198262_f1_5	1265	3868	492	163	175	2.90E−13	[ac:p49330] [gn:rgg] [or: streptococcus gordonii challis ] [de:rgg protein] [sp:p49330]
							[db:swissprot]
26198441_f2_11	1266	3869	1092	363	872	2.30E−87	[ac:s77464] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803,] [db:pir]
26199213_f3_62	1267	3870	255	84	61	0.24	[ln:celk10c2] [ac:u39852] [gn:k10c2.6] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid k10c2.]
							[le:<32854:32898:33228] [re:32855:33169:33274] [di:directjoin]
26203201_f1_1	1268	3871	855	284	1009	7.00E−102	[ac:q00752] [gn:msmk] [or: streptococcus mutans ] [de:multiple sugar-binding transport
							atp-binding protein msmk] [sp:q00752] [db:swissprot]
26203781_f1_8	1269	3872	921	306	1318	1.30E−134	[ac:q54713] [gn:hasc] [or: streptococcus pyogenes ] [ec:2.7.7.9] [de:uridylyltransferase)
							(uridine diphosphoglucose pyrophosphorylase)] [sp:q54713] [db:swissprot]
26211517_f3_31	1270	3873	714	237	508	8.60E−49	[ac:p10089] [gn:hlyb] [or: escherichia coli ] [de:hemolysin secretion atp-binding protein,
							chromosomal] [sp:p10089] [db:swissprot]
26226050_c1_55	1271	3874	318	105	126	2.60E−08	[ac:b30868] [pn:hypothetical protein 1 (insertion sequence is861)] [gn:is861-orf 1]
							[or: streptococcus agalactiae ] [db:pir]
26227302_f1_3	1272	3875	1080	359	1806	2.40E−186	[ac:p18765] [gn:amie] [or: streptococcus pneumoniae ] [de:oligopeptide transport atp-
							binding protein amie] [sp:p18765] [db:swissprot]
26227307_c1_13	1273	3876	780	259	671	4.60E−66	[ac:p42976] [gn:dapb] [or: bacillus subtilis ] [ec:1.3.1.26] [de:dihydrodipicolinate
							reductase,] [sp:p42976] [db:swissprot]
26230400_f1_1	1274	3877	1725	574	264	2.60E−24	[ac:c69975] [pn:acyltransferase homolog yrhl] [gn:yrhl] [or: bacillus subtilis ] [db:pir]
26254681_c2_111	1275	3878	507	168	345	1.60E−31	[ln:shu75349] [ac:u75349] [pn:periplasmic-iron-binding protein shib] [or: serpulina
							hyodysenteriae ] [db:genpept-bct] [de: serpulina hyodysenteriae shi operon, periplasmic-
							iron-bindingproteins shia and shib, putative abc transporter shic, and putativepermeas
26257843_f3_14	1276	3879	1203	400	485	2.30E−46	[ac:g69849] [pn:endo-1,4-beta-xylanase homolog yjea] [gn:yjea] [or: bacillus subtilis ]
							[db:pir]
26259687_c2_16	1277	3880	1047	349	1372	2.40E−140	[ac:b69722] [pn:trna-guanine transglycosylase tgt] [gn:tgt] [or: bacillus subtilis ] [db:pir]
26261317_f1_1	1278	3881	447	148	316	1.90E−28	[ac:p39157] [gn:ywlg:ipc-33d] [or: bacillus subtilis ] [de:hypothetical 19.4 kd protein in
							spoiir-glyc intergenic region] [sp:p39157] [db:swissprot]
26282888_f1_10	1279	3882	645	214	91	0.21	[ac:p26685] [or:african swine fever virus] [sr:,isolate malawi lil 20/1:asfv] [ec:1.17.4.1]
							[de:(ribonucleotide reductase)] [sp:p26685] [db:swissprot]
26282942_f3_28	1280	3883	267	88	87	0.015	[ln:ab002371] [ac:ab002371] [gn:kiaa0373] [or: homo sapiens ] [sr: homo sapiens male
							brain cdna to mrna, clone_lib:pbluescriptii s] [db:genpept-pri2] [de:human mrna for
							kiaa0373 gene, complete cds.] [le:1181] [re:5800] [di:direct]
26284688_f3_29	1281	3884	462	153	368	5.90E−34	[ac:q02141] [gn:leua] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:4.1.3.12] [de:synthase) (alpha-ipm synthetase)] [sp:q02141] [db:swissprot]
26291630_c2_19	1282	3885	294	97	101	0.00021	[ln:nfu43192] [ac:u43192] [pn:myosin ii heavy chain] [or: naegleria fowleri ]
							[db:genpept-inv] [de: naegleria fowleri myosin ii heavy chain mrna, partial cds.] [le:<1]
							[re:2243] [di:direct]
26296926_c2_110	1283	3886	249	82	128	5.00E−08	[ac:q00753] [gn:msmr] [or: streptococcus mutans ] [de:msm operon regulatory protein]
							[sp:q00753] [db:swissprot]
26297201_c3_26	1284	3887	1362	453	1766	4.20E−182	[ac:q99040] [gn:dexb] [or: streptococcus mutans ] [ec:3.2.1.70] [de:(exo-1,6-alpha-
							glucosidase) (glucodextranase)] [sp:q99040] [db:swissprot]
26345063_f3_3	1285	3888	2328	775	1146	4.60E−137	[ac:d69617] [pn:dna polymerase iii (alpha subunit) dnae] [gn:dnae] [or: bacillus subtilis ]
							[db:pir]
26346006_c3_15	1286	3889	225	74	248	3.10E−21	[ac:p26908] [gn:rplu] [or: bacillus subtilis ] [de:50s ribosomal protein 121 (b120)]
							[sp:p26908] [db:swissprot]
26350137_f2_6	1287	3890	267	88	64	0.029	[ln:celc33f10] [ac:u49830] [gn:c33f10.4] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c33f10.]
							[le:621:1086:1560] [re:770:1514:1955] [di:directjoin]
26352312_f3_30	1288	3891	876	291	665	2.00E−65	[ac:b69098] [pn:phosphate transporter permease pstc] [gn:mth1729]
							[or: methanobacterium thermoautotrophicum ] [db:pir]
26359757_f1_1	1289	3892	1185	394	1176	1.40E−119	[ln:ldgappgk] [ac:aj000339] [pn:phosphoglycerate kinase] [gn:pgk] [or: lactobacillus
							delbrueckii ] [db:genpept-bct] [ec:2.7.2.3] [de: lactobacillus delbrueckii ygap, gap, pgk,
							tpi, and ycse genes.] [le:2369] [re:3580] [di:direct]
26362557_f2_8	1290	3893	2361	786	1478	1.40E−151	[ac:d69985] [pn:dna mismatch repair protein homolog yshd] [gn:yshd] [or: bacillus
							subtilis ] [db:pir]
26362780_f3_1	1291	3894	186	62	95	5.00E−05	[ac:b70057] [pn:transcriptional regulator (marr family) homolog ywha] [gn:ywha]
							[or: bacillus subtilis ] [db:pir]
26362817_c3_30	1292	3895	1566	521	1270	1.50E−129	[ac:p73473] [gn:prfc:slr1228] [or:synechocystis sp] [sr:pcc 6803,] [de:peptide chain
							release factor 3 (rf-3)] [sp:p73473] [db:swissprot]
26363175_f2_5	1293	3896	744	247	523	2.20E−50	[ac:a64666] [pn:glutamine abc transporter, permease protein] [or: helicobacter pylori ]
							[db:pir]
26365912_c1_39	1294	3897	231	76	75	0.0014	[ac:p15552] [gn:nd5] [or: strongylocentrotus purpuratus ] [sr:,purple sea urchin]
							[ec:1.6.5.3] [de:nadh-ubiquinone oxidoreductase chain 5,] [sp:p15552] [db:swissprot]
26366327_c1_50	1295	3898	1200	399	315	2.40E−28	[ln:efu94707] [ac:u94707] [pn:cell division protein] [gn:div1b] [or: enterococcus
							faecalis ] [db:genpept-bct] [de: enterococcus faecalis strain a24836 cell wall/cell division
							genecluster, yllb, yllc, ylld, pbpc, mray, murd, murg, div1b, ftsa andftsz genes, c
26366626_c3_41	1296	3899	609	202	696	1.00E−68	[ac:p04447] [gn:rpla] [or: bacillus stearothermophilus ] [de:50s ribosomal protein 11]
							[sp:p04447] [db:swissprot]
26367303_c1_43	1297	3900	873	290	445	4.10E−42	[ac:h69708] [pn:dna processing smf protein homolog smf] [gn:smf] [or: bacillus subtilis ]
							[db:pir]
26367312_c1_39	1298	3901	627	208	902	1.50E−90	[ln:sasoda] [ac:y12224] [pn:manganese-dependent superoxide dismutase] [gn:soda]
							[or: streptococcus agalactiae ] [db:genpept-bct] [de: s.agalactiae soda gene.] [le:1860]
							[re:2468] [di:direct]
26367762_f2_5	1299	3902	909	302	764	6.40E−76	[ln:cau76387] [ac:u76387] [pn:prpp synthetase] [gn:prs] [or: corynebacterium
							ammoniagenes ] [db:genpept-bct] [ec:2.7.6.1] [de: corynebacterium ammoniagenes n-
							acetyl glucoseamine 1-phosphateuridyltransferase (glmu) gene, partial cds, and prpp-
							synthetase(prs)
26367812_c2_35	1300	3903	1029	342	212	8.60E−16	[ac:p44658] [gn:hi0357] [or: haemophilus influenzae ] [de:putative thiamine biosynthesis
							protein hi0357] [sp:p44658] [db:swissprot]
26369000_f3_4	1301	3904	1179	392	81	0.027	[ac:f69769] [pn:conserved hypothetical protein ydao] [gn:ydao] [or: bacillus subtilis ]
							[db:pir]
26369052_c2_41	1302	3905	1905	634	1094	6.90E−111	[ln:soorfs] [ac:z79691] [pn:orfa] [gn:yorfa] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae yorf[a,b,c,d,e], ftsl, pbpx and regr genes.] [le:<1] [re:624]
							[di:direct]
26369077_c1_33	1303	3906	2181	726	636	1.10E−97	[ac:s46952:s63605] [pn:phosphotransferase system enzyme ii,, glucose-specific, factor
							iia:glucose permease:phosphoenolpyruvate:glucose phosphotransferase system enzyme
							ii, glucose-specific:phosphotransferase system enzyme ii, glucose-specific, factor 1:pr
26369187_c1_19	1304	3907	201	66	70	0.055	[ac:s46426] [pn:probable botulinum neurotoxin regulator protein 22] [or: clostridium
							botulinum phage 1c] [sr:strain c 468, , strain c 468] [sr:strain c 468,] [db:pir]
26370757_c3_56	1305	3908	750	249	102	0.003	[ln:sbglurich] [ac:x95984] [pn:glutamic acid-rich protein] [or: solanum berthaultii ]
							[db:genpept-pln] [de: s.berthaultii mrna for glutamic acid-rich protein.] [le:162] [re:884]
							[di:direct]
26370881_f3_9	1306	3909	528	175	441	1.10E−41	[ac:p96050] [gn:fold] [or: streptococcus thermophilus ] [ec:1.5.1.5:3.5.4.9]
							[de:methenyltetrahydrofolate cyclohydrolase,] [sp:p96050] [db:swissprot]
26375465_c1_20	1307	3910	258	85	149	4.50E−10	[ln:spcps14e] [ac:x85787] [gn:tasa] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae cps14 locus.] [le:12856] [re:13935] [di:direct]
26377258_f2_3	1308	3911	567	188	182	3.00E−14	[ln:mtcy22d7] [ac:z83866] [pn:unknown] [gn:mtcy22d7.28] [or: mycobacterium
							tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis cosmid scy22d7.]
							[nt:mtcy22d7.28. len:184. function:unknown but shows] [le:28139] [re:28693]
							[di:direct]
26381567_f1_2	1309	3912	222	73	56	0.86	[ac:p08447] [gn:atpf] [or:synechococcus sp] [sr:pcc 6301,] [ec:3.6.1.34] [de:atp
							synthase b chain, (subunit i)] [sp:p08447] [db:swissprot]
26382061_c3_118	1310	3913	297	98	200	3.70E−16	[ac:g69878] [pn:conserved hypothetical protein yloo] [gn:yloo] [or: bacillus subtilis ]
							[db:pir]
26383563_c3_116	1311	3914	948	315	787	2.30E−78	[ac:a69626] [pn:methionyl-trna formyltransferase fmt] [gn:fmt] [or: bacillus subtilis ]
							[db:pir]
26384637_c2_97	1312	3915	1245	414	206	3.50E−16	[ln:rmexpgns] [ac:z79692] [pn:orf25] [or: sinorhizobium meliloti ] [db:genpept-bct]
							[de: r.meliloti exp gene cluster.] [le:30279] [re:31097] [di:complement]
26384687_c1_38	1313	3916	627	208	243	6.00E−24	[ln:af015453] [ac:af015453] [pn:unknown] [or: lactobacillus rhamnosus ] [db:genpept-
							bct] [de: lactobacillus rhamnosus 6-phospho-beta-glucosidase homolog gene,partial cds;
							gntr transcriptional regulator homolog and surfacelocated protein genes, complete cds.]
26385967_c2_68	1314	3917	1716	571	1039	4.60E−105	[ac:i40794] [pn:dihydrolipoamide dehydrogenase,] [or: clostridium magnum ]
							[ec:1.8.1.4] [db:pir]
26423750_f2_4	1315	3918	717	238	102	0.0084	[ln:stpykforf] [ac:x99945] [pn:amino acid permease yeef like protein] [gn:orf48]
							[or: salmonella typhimurium ] [db:genpept-bct] [de: s.typhimurium orfs 32 & 48 & gene
							pykf.] [le:1171] [re:2517] [di:direct]
26438452_f3_38	1316	3919	1263	420	891	2.20E−89	[ac:g70019] [pn:conserved hypothetical protein yurx] [gn:yurx] [or: bacillus subtilis ]
							[db:pir]
26439010_f1_2	1317	3920	708	235	535	1.20E−51	[ac:f69879] [pn:phosphoglycerate dehydrogenase homolog ylow] [gn:ylow] [or: bacillus
							subtilis ] [db:pir]
26439463_f3_30	1318	3921	1017	338	646	2.00E−63	[ac:p42062] [gn:appb] [or: bacillus subtilis ] [de:oligopeptide transport permease protein
							appb] [sp:p42062] [db:swissprot]
26445282_f2_22	1319	3922	990	329	261	1.30E−22	[ac:i40867] [pn:hypothetical protein 2] [or: clostridium perfringens ] [db:pir]
26445443_c1_50	1320	3923	1008	335	886	7.50E−89	[ac:i40791] [pn:tpp-dependent acetoin dehydrogenase beta chain] [or: clostridium
							magnum ] [db:pir]
26446062_c1_19	1321	3924	2043	680	227	6.10E−18	[ac:p46321] [gn:celr] [or: bacillus subtilis ] [de:putative cel operon regulator]
							[sp:p46321] [db:swissprot]
26449187_c2_37	1322	3925	666	221	334	2.40E−30	[ac:q47744] [gn:vanrb] [or: enterococcus faecalis ] [sr:, streptococcus faecalis ]
							[de:regulatory protein vanrb] [sp:q47744] [db:swissprot]
26454762_f1_1	1323	3926	675	224	577	4.20E−56	[ac:c70040] [pn:plant-metabolite dehydrogenase homolog yvgn] [gn:yvgn] [or: bacillus
							subtilis ] [db:pir]
26460882_c1_26	1324	3927	213	70	77	0.0071	[ln:pmdororf5] [ac:z49712] [gn:orf] [or: pseudotsuga menziesii ] [sr:douglas fir]
							[db:genpept-pln] [de: p.menziesii mrna (open reading frame) (df77a).] [le:79] [re:573]
							[di:direct]
26460926_c1_74	1325	3928	642	213	614	5.00E−60	[ac:b69878] [pn:guanylate kinase homolog ylod] [gn:ylod] [or: bacillus subtilis ] [db:pir]
26460942_c2_182	1326	3929	210	69	61	0.27	[ln:btu89796] [ac:u89796] [pn:chitinase] [gn:chi] [or: bacillus thuringiensis ] [db:genpept-
							bct] [de: bacillus thuringiensis chitinase (chi) gene, complete cds.] [le:255] [re:2162]
							[di:direct]
26460962_c1_160	1327	3930	252	83	74	0.13	[ln:celc30b5] [ac:u23450] [gn:c30b5.6] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c30b5.]
							[le:27490:27675:27835] [re:27593:27782:27927] [di:complementjoin]
26461062_c2_21	1328	3931	573	191	219	3.60E−18	[ln:lgapfa] [ac:y08498] [pn:aggregation promoting protein] [gn:apfa] [or: lactobacillus
							gasseri ] [db:genpept-bct] [de: l.gasseri apfa gene.] [le:125] [re:1018] [di:direct]
26462827_c2_34	1329	3932	267	88	95	0.00036	[ac:p32653] [gn:mrp] [or: streptococcus suis ] [de:muramidase-released protein precursor
							(136 kd surface protein)] [sp:p32653] [db:swissprot]
26464067_f1_5	1330	3933	1086	361	662	4.10E−65	[ac:s75507] [pn:3-dehydroquinate synthase:protein slr2130:protein slr2130] [gn:arob]
							[cl:3-dehydroquinate synthase:3-dehydroquinate synthase homology] [or:synechocystis
							sp.] [sr:pcc 6803, , pcc 6803] [sr:pcc 6803,] [db:pir]
26464192_f1_8	1331	3934	276	91	77	0.0071	[ac:q58062] [gn:mj0646] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj0646] [sp:q58062] [db:swissprot]
26566902_f3_16	1332	3935	201	66	68	0.33	[ac:p50770] [gn:e2] [or:human papillomavirus type 24] [de:regulatory protein e2]
							[sp:p50770] [db:swissprot]
26580452_f2_15	1333	3936	1386	461	567	4.80E−55	[ln:lhpepign] [ac:z56283] [gn:orf1] [or: lactobacillus helveticus ] [db:genpept-bct]
							[de: l.helveticus pepi gene.] [le:184] [re:1518] [di:direct]
26587580_c1_25	1334	3937	213	70	134	2.50E−08	[ln:llu80410] [ac:u80410] [pn:phosphopentomutase] [gn:deob] [or: lactococcus lactis
							cremoris ] [db:genpept-bct] [de: lactococcus lactis cremoris phosphopentomutase (deob)
							and purinenucleoside phosphorylase (deod) genes, complete cds.] [nt:deob; deob mutant
							i
26594032_f1_2	1335	3938	201	66	100	1.50E−05	[ac:c69931] [pn:transcriptional regulator homolog yozg] [gn:yozg] [or: bacillus subtilis ]
							[db:pir]
26594063_c2_48	1336	3939	972	323	271	1.10E−23	[ac:p39776] [gn:codv] [or: bacillus subtilis ] [de:probable integrase/recombinase codv]
							[sp:p39776] [db:swissprot]
26594586_f2_12	1337	3940	402	133	518	7.50E−50	[ac:a36933] [pn:diacylglycerol kinase homolog] [or: streptococcus mutans ] [db:pir]
26597253_c1_14	1338	3941	999	333	453	1.90E−59	[ln:celc34g6] [ac:u97407] [gn:c34g6.4] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c34g6.]
							[nt:strong similarity to the atp-binding transport] [le:18845:19018:20025:20344] [r
26603188_c1_26	1339	3942	3732	1243	509	1.60E−54	[ac:c69492] [pn:phosphoribosylformylglycinamidine synthase ii (purl) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
26603463_c1_54	1340	3943	1248	415	948	2.00E−95	[ac:p35855] [gn:dltb] [or: lactobacillus casei ] [de:dltb protein (basic membrane protein)
							(bmp)] [sp:p35855] [db:swissprot]
26604575_c1_28	1341	3944	579	192	99	0.0022	[ac:p52086] [gn:phpb] [or: escherichia coli ] [de:phpb protein] [sp:p52086]
26604828_f1_7	1342	3945	1347	448	882	2.00E−88	[ac:p54521] [gn:yqib] [or: bacillus subtilis ] [ec:3.1.11.6] [de:vii large subunit)]
							[sp:p54521] [db:swissprot]
26618965_f3_29	1343	3946	1092	363	737	4.60E−73	[ac:e70009] [pn:conserved hypothetical protein yufp] [gn:yufp] [or: bacillus subtilis ]
							[db:pir]
26620327_f1_1	1344	3947	390	129	80	0.46	[ln:mmrhammr] [ac:x64550:s41029] [pn:ha receptor for hyaluronic acid] [gn:rhamm1]
							[fn:involved in cell motility] [or: mus musculus ] [sr:house mouse] [db:genpept-rod]
							[de: m.musculus mrna rhamm.] [nt:70-kd protein, exon 4 alternatively spliced]
							[sp:q00547] [
266251_f1_1	1345	3948	249	82	59	0.84	[ac:p20246] [or: torpedo marmorata ] [sr:,marbled electric ray] [de:hemoglobin beta-1
							chain] [sp:p20246] [db:swissprot]
266263_c2_108	1346	3949	324	107	68	0.49	[ln:af029944] [ac:af029944] [pn:igm heavy chain vdj region] [or: oryctolagus cuniculus ]
							[db:genpept-mam] [de: oryctolagus cuniculus clone 2516 igm heavy chain vdj region
							mrna,partial cds.] [le:<1] [re:
26678808_f3_29	1347	3950	519	172	84	0.064	[ac:p25958] [gn:comgf:comg6] [or: bacillus subtilis ] [de:comg operon protein 6]
							[sp:p25958] [db:swissprot]
26681687_f2_27	1348	3951	744	247	67	0.66	[ln:vcrvc] [ac:x64097] [or: vibrio cholerae ] [db:genpept-bct] [de: v.cholerae dna for rvc
							repeated sequence.] [nt:orf(11 kda)] [le:1628] [re:1918] [di:complement]
26736642_c3_18	1349	3952	186	61	54	0.19	[ac:s76247] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803,] [db:pir]
26738757_c1_12	1350	3953	879	292	381	2.50E−35	[ac:p32436] [gn:degv] [or: bacillus subtilis ] [de:degv protein] [sp:p32436]
							[db:swissprot]
26740926_f1_1	1351	3954	498	165	387	5.70E−36	[ln:stacadres] [ac:110909] [gn:ds rf] [or: staphylococcus aureus ] [sr: staphylococcus
							aureus (strain r35) dna] [db:genpept-bct] [de: staphylococcus aureus tnpa gene, tnpb
							gene, tnpc gene, ds rf gene,complete cds's; cadmium resistance (cada) gene, complete
26745292_f3_10	1352	3955	327	108	334	2.40E−30	[ln:spu11799] [ac:u11799] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes insertion sequence is 1239 putativetransposase gene,
							complete cds.] [nt:putative transposase] [le:379] [re:1359] [di:direct]
26751250_f1_12	1353	3956	252	83	228	4.00E−19	[ac:d69999] [pn:conserved hypothetical protein ytqa] [gn:ytqa] [or: bacillus subtilis ]
							[db:pir]
26751563_c3_63	1354	3957	204	67	115	3.80E−07	[ln:bmgluckin] [ac:aj000005] [gn:orf1] [fn:homologous to yqgq from bacillus subtilis ]
							[or: bacillus megaterium ] [db:genpept-bct] [de: bacillus megaterium glk gene.] [le:67]
							[re:273] [di:direct]
26756312_f2_7	1355	3958	534	177	324	2.70E−29	[ac:a64922] [pn:hypothetical protein b1647] [or: escherichia coli ] [db:pir]
26756567_c2_49	1356	3959	708	235	428	2.60E−40	[ac:d64128] [pn:lic-1 protein c] [gn:licc] [or: haemophilus influenzae ] [db:pir]
26756640_f2_18	1357	3960	1056	351	1152	4.90E−117	[ac:q02143] [gn:leub] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:1.1.1.85] [de:(imdh) (3-ipm-dh)] [sp:q02143] [db:swissprot]
26756677_c2_58	1358	3961	1383	460	2287	2.60E−237	[ln:spdnaarg] [ac:af000658] [pn:initiator protein] [gn:spdnaa] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae r801 trna-arg gene, partial
							sequence, andputative serine protease (sphtra), spspoj (spspoj), initiatorprotein (spdna
26756703_c3_13	1359	3962	756	251	237	1.10E−35	[ac:e69796] [pn:two-component response regulator [yesm] homolog yesn] [gn:yesn]
							[or: bacillus subtilis ] [db:pir]
26757838_f1_2	1360	3963	642	213	385	9.30E−36	[ac:a69999] [pn:phenylalanyl-trna synthetase (beta subunit) homolog ytpr] [gn:ytpr]
							[or: bacillus subtilis ] [db:pir]
26758426_f3_14	1361	3964	486	161	575	6.80E−56	[ac:p43659] [gn:smpb] [or: enterococcus faecalis ] [sr:, streptococcus faecalis ] [de:small
							protein b homolog] [sp:p43659] [db:swissprot]
26758437_c3_86	1362	3965	2034	677	3357	0	[ac:s71016] [pn:helicase recg homolog] [or: streptococcus pneumoniae ] [db:pir]
26759700_c1_37	1363	3966	681	226	291	2.90E−25	[ac:p54493] [gn:yqgp] [or: bacillus subtilis ] [de:hypothetical 56.4 kd protein in soda-
							comga intergenic region] [sp:p54493] [db:swissprot]
26759707_c3_35	1364	3967	960	319	268	2.20E−46	[ac:p21628] [gn:brae] [or: pseudomonas aeruginosa ] [de:high-affinity branched-chain
							amino acid transport protein brae] [sp:p21628] [db:swissprot]
26761012_c3_48	1365	3968	1335	444	1106	3.70E−112	[ac:h69979] [pn:proteinase homolog yrro] [gn:yrro] [or: bacillus subtilis ] [db:pir]
26767888_f1_11	1366	3969	462	153	93	0.0022	[ac:g64636] [pn:hypothetical protein hp0935] [or: helicobacter pylori ] [db:pir]
26768762_f3_10	1367	3970	1305	434	1425	5.80E−146	[ac:p52985] [gn:hom] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:1.1.1.3] [de:homoserine dehydrogenase, (hdh)] [sp:p52985] [db:swissprot]
26772338_c2_16	1368	3971	621	206	84	0.55	[ln:ae001149] [ac:ae001149:ae000783] [pn:aspartyl-trna synthetase (asps)] [gn:bb0446]
							[or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct] [de: borrelia
							burgdorferi (section 35 of 70) of the complete genome.] [nt:similar to sp:p21889 gb:
26773430_f2_27	1369	3972	477	158	283	6.00E−25	[ln:llu63724] [ac:u63724] [pn:signal peptidase type ii] [gn:lspl] [or: lactococcus lactis ]
							[db:genpept-bct] [de: lactococcus lactis signal peptidase type ii (lspl) gene,
							completecds.] [nt:lspl] [le:430] [re:861] [di:direct]
26773437_c1_19	1370	3973	2343	780	3671	0	[ac:q59934] [gn:pfl] [or: streptococcus mutans ] [ec:2.3.1.54] [de:formate
							acetyltransferase, (pyruvate formate-lyase)] [sp:q59934] [db:swissprot]
26774212_f1_5	1371	3974	717	238	172	3.60E−13	[ac:g70045] [pn:hypothetical protein yvqf] [gn:yvqf] [or: bacillus subtilis ] [db:pir]
26776050_f2_19	1372	3975	375	124	210	3.30E−17	[ac:jc1151] [pn:hypothetical 20.3k protein (insertion sequence is 1131)]
							[or: agrobacterium tumefaciens ] [db:pir]
26776535_c3_120	1373	3976	219	72	62	0.18	[ac:p52488] [gn:uba2:ua11:pip2:ydr390c:d9509.10] [or: saccharomyces cerevisiae ]
							[sr:,baker's yeast] [de:2)] [sp:p52488] [db:swissprot]
26776563_f2_25	1374	3977	1788	595	1435	5.00E−147	[ac:p50852] [gn:mtla] [or: bacillus stearothermophilus ] [ec:2.7.1.69] [de:(ec 2.7.1.69)
							(eii-mtl)] [sp:p50852] [db:swissprot]
26776637_f1_3	1375	3978	336	111	186	1.10E−14	[ac:p46319] [gn:celc] [or: bacillus subtilis ] [ec:2.7.1.69] [de:(ec 2.7.1.69) (eiii-cel)]
							[sp:p46319] [db:swissprot]
26777330_f2_16	1376	3979	1110	369	1036	9.60E−105	[ln:sgu81957] [ac:u81957] [pn:putative abc transporter subunit comyb] [gn:comyb]
							[or: streptococcus gordonii ] [db:genpept-bct] [de: streptococcus gordonii rna polymerase
							beta' subunit (rpoc),putative dna binding protein, putative abc transporter subunitcomy
26796899_c1_11	1377	3980	820	273	315	1.10E−27	[ac:q11046] [gn:mtcy50.09] [or: mycobacterium tuberculosis ] [de:hypothetical abc
							transporter atp-binding protein cy50.09] [sp:q11046] [db:swissprot]
26802200_f1_3	1378	3981	882	293	532	2.50E−51	[ac:p54460] [gn:yqet] [or: bacillus subtilis ] [ec:2.1.1.—] [de:probable methyltransferase,]
							[sp:p54460] [db:swissprot]
26829637_f3_11	1379	3982	261	86	124	4.20E−08	[ac:a70028] [pn:hypothetical protein yval] [gn:yval] [or: bacillus subtilis ] [db:pir]
26834657_c1_67	1380	3983	318	105	85	0.00057	[ln:d78257] [ac:d78257] [pn:bacb] [gn:bacb] [or: enterococcus faecalis ] [sr: enterococcus
							faecalis plasmid:pyi17 dna] [db:genpept-bct] [de: enterococcus faecalis plasmid pyi17
							genes for baca, bacb, orf3, orf4, orf5, orf6, orf7, orf8, orf9, orf10, orf11, partia
26836053_f2_3	1381	3984	1302	433	240	3.10E−29	[ac:e69796] [pn:two-component response regulator [yesm] homolog yesn] [gn:yesn]
							[or: bacillus subtilis ] [db:pir]
26839687_f3_16	1382	3985	969	322	687	9.20E−68	[ln:lllvsfpep] [ac:x99710] [pn:transcription factor] [or: lactococcus lactis ] [db:genpept-
							bct] [de: l.lactis orf, genes homologous to vsf-1 and pepf2 and gene encodingprotein
							homologous to methyltransferase.] [nt:weak homology with vsf-1 gene (x73635)] [le:
26839762_c1_23	1383	3986	1719	572	1548	5.30E−159	[ac:s76895] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803,] [db:pir]
26852051_f1_7	1384	3987	258	85	139	1.10E−09	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
26854676_c3_76	1385	3988	729	242	217	2.00E−17	[ac:h69812] [pn:conserved hypothetical protein yfmi] [gn:yfmi] [or: bacillus subtilis ]
							[db:pir]
273451_c1_69	1386	3989	630	209	358	6.70E−33	[ac:e69670] [pn:glycine betaine/carnitine/choline abc transporter (osmoprotec) opucc]
							[gn:opucc] [or: bacillus subtilis ] [db:pir]
2735037_c2_70	1387	3990	705	234	92	0.2	[ln:ae001120] [ac:ae001120:ae000783] [pn: b. burgdorferi predicted coding region
							bb0072] [gn:bb0072] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-
							bct] [de: borrelia burgdorferi (section 6 of 70) of the complete genome.] [nt:hypothetica
2735687_f1_6	1388	3991	345	114	65	0.073	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
2739768_f3_16	1389	3992	564	187	612	8.20E−60	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir]
274017_c2_39	1390	3993	666	221	955	3.70E−96	[ln:sgu57759] [ac:u57759] [pn:intrageneric coaggregation-relevant adhesin]
							[or: streptococcus gordonii ] [db:genpept-bct] [de: streptococcus gordonii intrageneric
							coaggregation-relevant adhesingene, complete cds.] [le:277] [re:1212] [di:direct]
2740801_f2_81	1391	3994	189	62	58	0.34	[ac:g69750] [pn:hypothetical protein ybgb] [gn:ybgb] [or: bacillus subtilis ] [db:pir]
2740883_c2_31	1392	3995	228	75	73	0.14	[ac:p10269] [gn:env] [or:baboon endogenous virus] [sr:m7,] [de:protein gp70 and
							transmembrane protein p20e)] [sp:p10269] [db:swissprot]
2745678_c2_74	1393	3996	198	65	267	3.00E−23	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
2745678_f1_2	1394	3997	189	62	200	3.70E−16	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
2745678_f1_3	1395	3998	225	74	203	1.80E−16	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
2750278_c2_90	1396	3999	1308	435	1252	1.20E−127	[ac:d69981] [pn:conserved hypothetical protein yrvn] [gn:yrvn] [or: bacillus subtilis ]
							[db:pir]
2750292_f2_19	1397	4000	285	94	70	0.17	[ac:a60236] [pn:f protein] [or: mus musculus ] [sr:, house mouse] [db:pir]
276388_c3_71	1398	4001	1356	451	1087	3.80E−110	[ac:f69825] [pn:sodium-dependent transporter homolog yhdh] [gn:yhdh] [or: bacillus
							subtilis ] [db:pir]
276707_f2_19	1399	4002	381	126	64	0.11	[ln:scdnafabd] [ac:x86475] [pn:acyl carrier protein] [gn:acpp] [or: streptomyces
							coelicolor ] [db:genpept-bct] [de: s.coelicolor fabd, fabh, and acpp genes.] [le:2215]
							[re:2463] [di:direct]
277162_f2_21	1400	4003	573	190	351	3.70E−32	[ac:e69999] [pn:hypothetical protein ytqb] [gn:ytqb] [or: bacillus subtilis ] [db:pir]
2771953_f2_11	1401	4004	618	205	355	1.40E−32	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
2777312_f3_5	1402	4005	1407	468	116	7.00E−08	[ln:hsu77718] [ac:u77718] [pn:pinin] [or: homo sapiens ] [sr:human] [db:genpept-pri2]
							[de:human desmosome associated protein pinin mrna, complete cds.] [nt:desmosome
							associated protein; phosphoprotein] [le:31] [re:2262] [di:direct]
2782063_f2_4	1403	4006	768	255	417	3.80E−39	[ac:e69979] [pn:folate metabolism homolog yrrl] [gn:yrrl] [or: bacillus subtilis ] [db:pir]
2812586_f3_27	1404	4007	669	222	223	1.40E−18	[ac:p37507] [gn:yyaq] [or: bacillus subtilis ] [de:hypothetical 13.9 kd protein in cotf-tetb
							intergenic region] [sp:p37507] [db:swissprot]
2812882_c1_13	1405	4008	597	198	936	3.80E−94	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
281638_c2_30	1406	4009	585	194	125	6.10E−06	[ac:p49263] [gn:pxn1] [or: xenopus laevis ] [sr:,african clawed frog] [de:pentraxin fusion
							protein precursor] [sp:p49263] [db:swissprot]
2823775_c3_66	1407	4010	543	180	168	9.60E−13	[ln:lrcnbgene] [ac:x99716] [pn:collagen binding protein] [gn:cnb] [or: lactobacillus
							reuteri ] [db:genpept-bct] [de: l.reuteri cnb gene.] [nt:potential part of an abc transporter
							system] [le:181] [re:972] [di:direct]
2834655_f3_40	1408	4011	222	73	58	0.19	[ac:p34137] [gn:ptpa:ptpl] [or: dictyostelium discoideum ] [sr:,slime mold] [ec:3.1.3.48]
							[de:phosphate phosphohydrolase 1)] [sp:p34137] [db:swissprot]
2862706_c1_37	1409	4012	378	125	497	1.30E−47	[ln:soorfs] [ac:z79691] [pn:ftsl] [gn:ftsl] [fn:cell division protein] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: s.pneumoniae yorf[a,b,c,d,e], ftsl, pbpx and regr
							genes.] [le:3710] [re:4027] [di:direct]
28699528_f1_1	1410	4013	249	82	158	5.90E−11	[ln:ldgappgk] [ac:aj000339] [pn:phosphoglycerate kinase] [gn:pgk] [or: lactobacillus
							delbrueckii ] [db:genpept-bct] [ec:2.7.2.3] [de: lactobacillus delbrueckii ygap, gap, pgk,
							tpi, and ycse genes.] [le:2369] [re:3580] [di:direct]
287688_f1_1	1411	4014	585	194	83	0.45	[ac:p06224] [gn:siga:rpod] [or: bacillus subtilis ] [de:rna polymerase sigma factor rpod
							(sigma-a) (sigma-43)] [sp:p06224] [db:swissprot]
2914687_f3_14	1412	4015	1524	507	1412	1.40E−144	[ac:b69795] [pn:amidase homolog yerm] [gn:yerm] [or: bacillus subtilis ] [db:pir]
2921888_f1_15	1413	4016	795	264	164	3.00E−10	[ac:c26304] [pn:ribose transport protein rbsc] [gn:rbsc] [or: escherichia coli ] [db:pir]
							[mp:84]
2924076_f1_5	1414	4017	1221	406	185	1.40E−11	[ln:pbu42580] [ac:u42580:u17055:u32570] [gn:a153r] [or: paramecium bursaria
							chlorella virus 1] [db:genpept-vr1] [de: paramecium bursaria chlorella virus 1, complete
							genome.] [nt:similar to phage t5 helicase, corresponds to] [le:77899] [re:79278]
2926702_c2_29	1415	4018	918	305	1249	2.60E−127	[ac:p35592] [gn:expl:plpa] [or: streptococcus pneumoniae ] [de:exported protein 1
							(fragment)] [sp:p35592] [db:swissprot]
29296918_f2_6	1416	4019	900	299	387	5.70E−36	[ac:p54604] [gn:yhct] [or: bacillus subtilis ] [de:hypothetical 33.7 kd protein in cspb-glpp
							intergenic region] [sp:p54604] [db:swissprot]
29297281_c2_20	1417	4020	681	226	961	8.50E−97	[ac:p36399] [gn:upp] [or: streptococcus salivarius ] [ec:2.4.2.9] [de:pyrophosphorylase)
							(uprtase)] [sp:p36399] [db:swissprot]
2930160_f1_4	1418	4021	345	114	189	5.50E−15	[ac:p44068] [gn:hi0882] [or: haemophilus influenzae ] [de:hypothetical protein hi0882]
							[sp:p44068] [db:swissprot]
29301927_c1_32	1419	4022	288	95	144	3.20E−10	[ac:p08876] [gn:ykxh] [or: bacillus subtilis ] [de:hypothetical 7.4 kd protein in ptsx
							operon (protein k)] [sp:p08876] [db:swissprot]
29302162_f2_29	1420	4023	315	104	204	1.40E−16	[ac:jc1151] [pn:hypothetical 20.3k protein (insertion sequence is 1131)]
							[or: agrobacterium tumefaciens ] [db:pir]
2930342_c2_21	1421	4024	987	328	969	1.20E−97	[ac:p39646] [gn:pta:ipa-88d] [or: bacillus subtilis ] [ec:2.3.1.8]
							[de:(phosphotransacetylase)] [sp:p39646] [db:swissprot]
2930462_f3_24	1422	4025	489	162	108	3.00E−06	[ac:p37187:p76413] [gn:gata] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69)]
							[sp:p37187:p76413] [db:swissprot]
2931568_f3_13	1423	4026	906	301	866	9.90E−87	[ac:p12039] [gn:purd] [or: bacillus subtilis ] [ec:6.3.4.13] [de:ribonucleotide synthetase)
							(phosphoribosylglycinamide synthetase)] [sp:p12039] [db:swissprot]
2931582_c2_71	1424	4027	636	211	322	4.40E−29	[ac:p37494] [gn:yybj] [or: bacillus subtilis ] [de:intergenic region] [sp:p37494]
							[db:swissprot]
29320836_c2_45	1425	4028	1386	461	2269	2.10E−235	[ac:p14677] [gn:pbpx] [or: streptococcus pneumoniae ] [de:penicillin-binding protein 2x
							(pbp-2x) (pbp2x)] [sp:p14677] [db:swissprot]
29320886_c2_11	1426	4029	1602	533	421	2.90E−39	[ac:p44808] [gn:hi0658] [or: haemophilus influenzae ] [de:hypothetical abc transporter
							atp-binding protein hi0658] [sp:p44808] [db:swissprot]
2932962_c3_69	1427	4030	645	215	719	3.80E−71	[ac:p50924] [gn:pyrf] [or: lactococcus lactis ] [sr:, subspcremoris : streptococcus cremoris ]
							[ec:4.1.1.23] [de:decarboxylase)] [sp:p50924] [db:swissprot]
29332967_c2_66	1428	4031	750	249	637	1.80E−62	[ac:e69751] [pn:abc transporter (atp-binding protein) homolog ybxa] [gn:ybxa]
							[or: bacillus subtilis ] [db:pir]
29335436_f2_27	1429	4032	186	61	60	0.23	[ln:mgu02157] [ac:u02157] [pn:mgpa] [fn:adhesin] [or: mycoplasma genitalium ]
							[db:genpept-bct] [de: mycoplasma genitalium adhesin mgpa gene, partial cds.]
							[nt:homology to m31431] [le:1] [re:218] [di:direct]
29347090_c2_188	1430	4033	468	155	115	3.80E−07	[ln:lbphigle] [ac:x98106] [gn:rorf115] [or: bacteriophage phigle ] [db:genpept-phg]
							[de: lactobacillus bacteriophage phigle complete genomic dna.] [le:33364] [re:33711]
							[di:complement]
29351077_f1_1	1431	4034	1107	368	850	4.90E−85	[ac:h69980] [pn:single-strand dna-specific exonuclease homolog yrve] [gn:yrve]
							[or: bacillus subtilis ] [db:pir]
29352152_c1_21	1432	4035	657	218	85	0.0018	[ln:stmorfal] [ac:m27108] [or: streptomyces lividans ] [sr: streptomyces lividans dna]
							[db:genpept-bct] [de: streptomyces lividans orfa gene, 3′ end.] [nt:orfa] [le:<1] [re:304]
							[di:direct]
29382303_f3_8	1433	4036	621	206	96	0.083	[ac:s59310] [pn:probable membrane protein ymr317w:hypothetical protein ym9924.09]
							[or: saccharomyces cerevisiae ] [db:pir] [mp:13r]
29384375_f2_8	1434	4037	222	73	61	0.25	[ln:ab001684] [ac:ab001684] [gn:trnt] [or:chloroplast chlorella vulgaris ] [sr: chlorella
							vulgaris chloroplast dna] [db:genpept-pln] [de: chlorella vulgaris c-27 chloroplast dna,
							complete sequence.] [nt:orf131] [le:46755] [re:47150] [di:complement]
29386552_f3_10	1435	4038	420	139	366	9.60E−34	[ac:q59812] [gn:glna] [or: staphylococcus aureus ] [ec:6.3.1.2] [de:glutamine synthetase,
							(glutamate--ammonia ligase) (gs)] [sp:q59812] [db:swissprot]
29386553_c2_13	1436	4039	501	166	743	1.10E−73	[ac:p10564] [gn:hexa] [or: streptococcus pneumoniae ] [de:dna mismatch repair protein
							hexa] [sp:p10564] [db:swissprot]
29398503_c3_16	1437	4040	1368	455	1405	7.60E−144	[ac:p25811] [gn:thdf] [or: bacillus subtilis ] [de:possible thiophene and furan oxidation
							protein thdf] [sp:p25811] [db:swissprot]
29398534_c2_49	1438	4041	1106	368	1195	1.40E−121	[ac:s32227] [pn:glutamate dehydrogenase (nadp+),] [cl:glutamate dehydrogenase
							(nad(p)+)] [or: corynebacterium glutamicum ] [sr:ssp. melassecola atcc 17965, , ssp.
							melassecola atcc 17965] [sr:ssp. melassecola atcc 17965,] [ec:1.4.1.4] [db:pir]
29401543_c3_11	1439	4042	225	74	154	1.70E−10	[ac:p42602] [gn:ygju] [or: escherichia coli ] [de:hypothetical 43.5 kd protein in ebgc-
							uxaa intergenic region (o414)] [sp:p42602] [db:swissprot]
29406325_f3_51	1440	4043	273	90	58	0.34	[ac:b31946] [pn:hypothetical protein (xdh 5′ region)] [gn:dpse/ry] [or: drosophila
							pseudoobscura ] [db:pir]
29407000_c3_57	1441	4044	195	64	53	0.12	[ln:sau73374] [ac:u73374] [pn:cap8i] [gn:cap8i] [or: staphylococcus aureus ] [db:genpept-
							bct] [de: staphylococcus aureus type 8 capsule genes, cap8a, cap8b, cap8c, cap8d, cap8e,
							cap8f, cap8g, cap8h, cap8i, cap8j, cap8k, cap8l, cap8m, cap8n, cap8o, cap8p, compl
29407812_c1_18	1442	4045	924	307	327	1.30E−29	[ac:p16148] [gn:pplz12] [or: lupinus polyphyllus ] [sr:,large-leaved lupine] [de:pplz12
							protein] [sp:p16148] [db:swissprot]
29414702_c1_37	1443	4046	243	80	90	0.00025	[ac:c69875] [pn:hypothetical protein ylbn] [gn:ylbn] [or: bacillus subtilis ] [db:pir]
29417086_f2_2	1444	4047	318	106	287	2.20E−24	[ac:q03727] [gn:coma] [or: streptococcus pneumoniae ] [de:transport atp-binding protein
							coma] [sp:q03727] [db:swissprot]
29417086_f2_5	1445	4048	213	70	60	0.31	[ac:p40082] [gn:yer135c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 15.4 kd protein in glc7-gdi1 intergenic region] [sp:p40082]
							[db:swissprot]
29454443_c3_214	1446	4049	852	283	76	0.027	[ac:p40274] [or: trypanosoma cruzi ] [de:histone h1.m6.2] [sp:p40274] [db:swissprot]
29459376_c1_18	1447	4050	192	63	65	0.26	[ln:celt01c4] [ac:u70858] [gn:t01c4.4] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid t01c4.]
							[nt:weak similarity to family 1 of g-protein coupled] [le:6968:7334:7438] [re:7195:
29459688_c1_53	1448	4051	267	88	72	0.17	[ac:s17112] [pn:interferon alpha/beta receptor] [or: homo sapiens ] [sr:, man] [db:pir]
2946067_f3_11	1449	4052	384	127	214	1.90E−17	[ac:b69517] [pn:phosphoserine phosphatase (serb) homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
29479587_c2_105	1450	4053	243	80	70	0.13	[ac:p33251] [gn:atpb] [or: mycoplasma gallisepticum ] [ec:3.6.1.34] [de:atp synthase a
							chain, (protein 6)] [sp:p33251] [db:swissprot]
29492192_f2_14	1451	4054	2235	744	1565	8.40E−161	[ln:temela] [ac:y08557] [pn:melibiase] [gn:mela]
							[fn:melibiose+h(2)o=galactose+glucose] [or: thermoanaerobacter ethanolicus ]
							[db:genpept] [ec:3.2.1.22] [de: t.ethanolicus mela and laca genes.] [nt:alpha-
							galactosidase] [le:<1] [re:1882] [di:direct]
29492756_f2_5	1452	4055	210	69	89	0.0055	[ln:celk09h11] [ac:u97002] [gn:k09h11.1] [or: caenorhabditis elegans ]
							[sr: caenorhabditis elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis
							elegans cosmid k09h11.] [nt:similar to acyl-coa dehydrogenases and epoxide]
29495462_f3_26	1453	4056	405	134	319	9.20E−29	[ac:p19079] [gn:cdd] [or: bacillus subtilis ] [ec:3.5.4.5] [de:cytidine deaminase, (cytidine
							aminohydrolase) (cda)] [sp:p19079] [db:swissprot]
29532961_f3_30	1454	4057	735	244	721	2.30E−71	[ac:f70009] [pn:conserved hypothetical protein yufq] [gn:yufq] [or: bacillus subtilis ]
							[db:pir]
29547806_f1_1	1455	4058	2640	879	2845	1.90E−296	[ac:q24803:q27649] [gn:adh2] [or: entamoeba histolytica ] [ec:1.1.1.1:1.2.1.10]
							[de:dehydrogenase, (acdh)] [sp:q24803:q27649] [db:swissprot]
29586586_f2_10	1456	4059	834	277	322	4.40E−29	[ac:p54535] [gn:yqix] [or: bacillus subtilis ] [de:intergenic region precursor] [sp:p54535]
							[db:swissprot]
29687515_c1_10	1457	4060	249	82	95	0.0001	[ac:s51908] [pn:cryptogene protein g1(nd9)] [or: leishmania tarentolae ] [sr:strain
							lem125, , strain lem125] [sr:strain lem125,] [db:pir]
29703951_f3_24	1458	4061	201	66	55	0.58	[ln:cec07e3] [ac:z49908] [pn:c07e3.7] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid c07e3, complete sequence.] [nt:similar to homeobox
							protein] [le:25003] [re:25239] [di:complement]
29710294_c2_75	1459	4062	671	223	1150	8.00E−117	[ln:af019904] [ac:af019904] [pn:choline binding protein a] [gn:cbpa] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae choline binding protein a
							(cbpa) gene,partial cds.] [nt:cbpa] [le:<1] [re:1992] [di:direct]
29806937_c1_32	1460	4063	687	228	545	1.00E−52	[ln:sapbp4gen] [ac:x91786] [pn:atp-binding cassette transporter a] [gn:abca]
							[or: staphylococcus aureus ] [db:genpept-bct] [de: s.aureus abca, pbp4, and tagd genes.]
							[le:311] [re:2038] [di:complement]
29871000_c2_26	1461	4064	231	76	70	0.048	[ac:p25566] [gn:yc133c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 19.3 kd protein in ste50 5′region] [sp:p25566] [db:swissprot]
29871000_c3_35	1462	4065	231	76	70	0.048	[ac:p25566] [gn:yc133c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 19.3 kd protein in ste50 5′region] [sp:p25566] [db:swissprot]
29871000_c3_52	1463	4066	231	76	70	0.048	[ac:p25566] [gn:yc133c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 19.3 kd protein in ste50 5′region] [sp:p25566] [db:swissprot]
29878587_c2_55	1464	4067	318	105	100	0.00037	[ac:p41508] [or: mycoplasma hyorhinis ] [de:p115 protein] [sp:p41508] [db:swissprot]
29884392_f1_6	1465	4068	597	198	551	2.40E−53	[ac:b30868] [pn:hypothetical protein 1 (insertion sequence is861)] [gn:is861-orf 1]
							[or: streptococcus agalactiae ] [db:pir]
29898562_c1_59	1466	4069	678	225	617	2.40E−60	[ln:bcbctlglr] [ac:y10927] [pn:glutamate racemase] [gn:bcglr] [or: bacillus cereus ]
							[db:genpept-bct] [de: b.cereus bct1 and bcglr genes.] [le:1826] [re:
29899150_c3_56	1467	4070	279	92	312	5.10E−28	[ac:f69866] [pn:tetrahydrodipicolinate succinylase homolog ykuq] [gn:ykuq]
							[or: bacillus subtilis ] [db:pir]
29930312_f3_13	1468	4071	414	137	122	2.90E−07	[ac:p46339] [gn:yqgh] [or: bacillus subtilis ] [de:region (orf72)] [sp:p46339]
							[db:swissprot]
29938791_f1_9	1469	4072	1287	428	1760	1.80E−181	[ac:p30299] [gn:ptsi] [or: streptococcus salivarius ] [ec:2.7.3.9] [de:(phosphotransferase
							system, enzyme i)] [sp:p30299] [db:swissprot]
29964201_f1_7	1470	4073	240	79	146	8.70E−10	[ac:p46919] [gn:gpsa:glyc] [or: bacillus subtilis ] [ec:1.1.1.94] [de:dependent
							dihydroxyacetone-phosphate reductase)] [sp:p46919] [db:swissprot]
29971068_c1_34	1471	4074	1134	377	225	1.00E−17	[ac:q58615] [gn:mj1218] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj1218] [sp:q58615] [db:swissprot]
29976636_c1_56	1472	4075	498	165	308	1.30E−27	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir]
29976636_c3_154	1473	4076	498	165	315	2.40E−28	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir]
29976636_c3_41	1474	4077	498	165	288	1.80E−25	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir]
29976636_f3_21	1475	4078	303	100	289	1.40E−25	[ac:b30868] [pn:hypothetical protein 1 (insertion sequence is861)] [gn:is861-orf 1]
							[or: streptococcus agalactiae ] [db:pir]
29976636_f3_32	1476	4079	303	100	280	1.20E−24	[ac:b30868] [pn:hypothetical protein 1 (insertion sequence is861)] [gn:is861-orf 1]
							[or: streptococcus agalactiae ] [db:pir]
30078375_c3_68	1477	4080	2379	792	1586	2.40E−203	[ac:i41291] [pn:ecoa type i restriction-modification enzyme r subunit] [or: escherichia
							coli ] [db:pir]
30079587_f3_6	1478	4081	387	128	77	0.065	[ac:p54557] [gn:yqjt] [or: bacillus subtilis ] [de:hypothetical 15.2 kd protein in glnq-ansr
							intergenic region] [sp:p54557] [db:swissprot]
30079702_c2_95	1479	4082	591	196	92	0.025	[ac:p25149] [gn:ywaf:ipa-11d] [or: bacillus subtilis ] [de:hypothetical 27.3 kd protein in
							tyrz-sacy intergenic region (orf1)] [sp:p25149] [db:swissprot]
30079827_f1_5	1480	4083	861	286	595	5.20E−58	[ac:g70057] [pn:spermidine synthase homolog ywhf] [gn:ywhf] [or: bacillus subtilis ]
							[db:pir]
30080000_c1_43	1481	4084	258	85	124	1.10E−07	[ac:p07655] [gn:pstb:phot] [or: escherichia coli ] [de:phosphate transport atp-binding
							protein pstb] [sp:p07655] [db:swissprot]
30081393_c3_52	1482	4085	2826	941	2319	1.10E−240	[ac:p18311] [gn:infb] [or: enterococcus faecium ] [sr:, streptococcus faecium ]
							[de:translation initiation factor if-2] [sp:p18311] [db:swissprot]
30088962_c1_21	1483	4086	273	90	66	0.057	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
30094211_f1_2	1484	4087	234	77	131	7.60E−09	[ac:c69844] [pn:hypothetical protein yjbk] [gn:yjbk] [or: bacillus subtilis ] [db:pir]
30095633_c3_16	1485	4088	1227	408	719	3.80E−71	[ac:p42977] [gn:paps] [or: bacillus subtilis ] [ec:2.7.7.19] [de:poly(a)polymerase, (pap)]
							[sp:p42977] [db:swissprot]
30095887_f3_28	1486	4089	291	96	89	0.00022	[ac:q47150] [gn:dinj] [or: escherichia coli ] [de:dna-damage-inducible protein j]
							[sp:q47150] [db:swissprot]
30098775_c3_40	1487	4090	309	102	105	5.30E−05	[ac:p50360] [gn:y4hp] [or:rhizobium sp] [sr:ngr234,] [de:hypothetical 61.7 kd protein
							y4hp] [sp:p50360] [db:swissprot]
30173292_c2_15	1488	4091	1902	633	1310	8.90E−134	[ac:a69814] [pn:abc transporter (atp-binding protein) homolog yfmr] [gn:yfmr]
							[or: bacillus subtilis ] [db:pir]
30173812_c1_38	1489	4092	819	272	517	9.50E−50	[ac:p54554] [gn:yqjq] [or: bacillus subtilis ] [ec:1.—.—.—] [de:(ec 1.—.—.—)] [sp:p54554]
							[db:swissprot]
30267942_f3_54	1490	4093	1392	463	1514	2.10E−155	[ac:d69785] [pn:beta-glucosidase homolog ydhp] [gn:ydhp] [or: bacillus subtilis ]
							[db:pir]
30272700_f1_16	1491	4094	243	80	69	0.34	[ln:cec08b6] [ac:z72502] [pn:c08b6.1] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid c08b6, complete sequence.] [nt:similar to udp-
							glucuronosyl transferase; cdna est] [le:1305:1776:2171] [re:1724:1861:2692]
							[di:complementjo
30273588_c1_37	1492	4095	861	286	325	2.10E−29	[ac:p54535] [gn:yqix] [or: bacillus subtilis ] [de:intergenic region precursor] [sp:p54535]
							[db:swissprot]
30274015_f1_3	1493	4096	591	196	64	0.27	[ac:p24019] [gn:taga] [or: vibrio cholerae ] [ec:3.2.2.20] [de:(3-methyladenine-dna
							glycosylase) (fragment)] [sp:p24019] [db:swissprot]
30289812_c1_24	1494	4097	1005	334	259	9.10E−25	[ac:s35295:s28578] [pn:rfbb protein] [gn:rfbb] [or: yersinia enterocolitica ] [db:pir]
30292137_c1_56	1495	4098	2031	676	74	0.46	[ac:p46116] [gn:aara] [or: providencia stuartii ] [de:aara protein] [sp:p46116]
							[db:swissprot]
30343755_c3_34	1496	4099	219	72	129	1.20E−08	[ac:d70063] [pn:hypothetical protein ywna] [gn:ywna] [or: bacillus subtilis ] [db:pir]
30344688_c2_33	1497	4100	885	295	196	9.90E−16	[ac:f69742] [pn:hypothetical protein ybaf] [gn:ybaf] [or: bacillus subtilis ] [db:pir]
30361632_c2_63	1498	4101	549	182	213	1.60E−17	[ac:f69972] [pn:conserved hypothetical protein yrbg] [gn:yrbg] [or: bacillus subtilis ]
							[db:pir]
30367325_f3_51	1499	4102	267	88	245	6.40E−21	[ac:p44030] [gn:hi0659] [or: haemophilus influenzae ] [de:hypothetical protein hi0659]
							[sp:p44030] [db:swissprot]
30368813_f3_4	1500	4103	1731	576	307	1.30E−24	[ac:d69796] [pn:two-component sensor histidine kinase [yes homolog yesm] [gn:yesm]
							[or: bacillus subtilis ] [db:pir]
30468826_c2_59	1501	4104	489	162	99	1.90E−05	[ac:g64935] [pn:hypothetical protein b1759] [or: escherichia coli ] [db:pir]
30475451_c3_79	1502	4105	1257	419	432	9.70E−41	[ac:p39578] [gn:dltd:ipa-2r] [or: bacillus subtilis ] [de:protein dltd precursor] [sp:p39578]
							[db:swissprot]
30484537_c3_28	1503	4106	1200	399	730	2.60E−72	[ac:a69802] [pn:a/g-specific adenine glycosylase homolog yfhq] [gn:yfhq] [or: bacillus
							subtilis ] [db:pir]
30503427_f3_52	1504	4107	1104	367	1220	3.10E−124	[ac:p49999] [gn:recf] [or: streptococcus pyogenes ] [de:recf protein] [sp:p49999]
							[db:swissprot]
30507160_c1_66	1505	4108	354	117	206	8.60E−17	[ac:s74925] [pn:transposase:protein sll0650:protein sll0650] [or:synechocystis sp.]
							[sr:pcc 6803, , pcc 6803] [sr:pcc 6803,] [db:pir]
30507160_c3_11	1506	4109	354	117	206	8.60E−17	[ac:s74925] [pn:transposase:protein sll0650:protein sll0650] [or:synechocystis sp.]
							[sr:pcc 6803, , pcc 6803] [sr:pcc 6803,] [db:pir]
30507160_c3_84	1507	4110	354	117	204	1.40E−16	[ln:ssu38915] [ac:u38915] [pn:putative transposase] [or:synechocystis pcc6803]
							[db:genpept-bct] [de:synechocystis sp. insertion sequences is5sb, is4sa and mariner-
							likeinsertion sequence istcsa, lytb gene, complete cds, and putativetransposase genes,
							parti
30511462_c3_42	1508	4111	897	298	1193	2.20E−121	[ac:q00750] [gn:msmf] [or: streptococcus mutans ] [de:multiple sugar-binding transport
							system permease protein msmf] [sp:q00750] [db:swissprot]
30650200_f2_19	1509	4112	330	109	346	1.30E−31	[ac:g64507] [pn:hypothetical protein mj1665] [or: methanococcus jannaschii ] [db:pir]
							[mp:rev1648556-1647180]
30656713_f3_44	1510	4113	678	225	350	4.70E−32	[ac:p37078] [gn:sorc] [or: klebsiella pneumoniae ] [de:sorbitol (sor) operon regulator]
							[sp:p37078] [db:swissprot]
30661263_f2_15	1511	4114	816	271	1250	2.00E−127	[ln:spu43526] [ac:u43526] [pn:neuraminidase b] [gn:nanb] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae neuraminidase b (nanb)
							gene, complete cds,and neuraminidase (nana) gene, partial cds.] [nt:nanb] [le:5102]
							[re:7195] [di:d
30665888_c1_38	1512	4115	936	311	1542	2.30E−158	[ac:p14677] [gn:pbpx] [or: streptococcus pneumoniae ] [de:penicillin-binding protein 2x
							(pbp-2x) (pbp2x)] [sp:p14677] [db:swissprot]
30682762_f3_33	1513	4116	1038	345	1302	6.20E−133	[ac:p54689] [gn:ilve:hi1193] [or: haemophilus influenzae ] [ec:2.6.1.42] [de:b) (bcat)]
							[sp:p54689] [db:swissprot]
30705313_c1_150	1514	4117	501	166	78	0.73	[ln:mtcy277] [ac:z79701] [pn:unknown] [gn:mtcy277.18] [or: mycobacterium
							tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis cosmid y277.]
							[nt:mtcy277.18, unknown, len:334, similarity to] [le:15782] [re:16786] [di:direct]
30724218_c3_126	1515	4118	363	120	154	3.60E−10	[ac:p03211] [gn:bkrf1] [or:epstein-barr virus] [sr:b95-8,human herpesvirus 4] [de:ebna-
							1 nuclear protein] [sp:p03211] [db:swissprot]
30735087_f1_6	1516	4119	330	109	87	0.0047	[ac:p09122] [gn:dnax:dnah] [or: bacillus subtilis ] [ec:2.7.7.7] [de:dna polymerase iii
							subunits gamma and tau,] [sp:p09122] [db:swissprot]
30745313_f3_9	1517	4120	864	287	531	3.10E−51	[ac:p42978] [gn:ypjc:jojc] [or: bacillus subtilis ] [de:hypothetical 23.6 kd protein in qcrc-
							dapb intergenic region] [sp:p42978] [db:swissprot]
30745881_c1_7	1518	4121	1128	375	1116	3.20E−113	[ac:p45213] [gn:hi1455] [or: haemophilus influenzae ] [de:hypothetical protein hi1455]
							[sp:p45213] [db:swissprot]
30750637_f2_21	1519	4122	747	248	121	2.20E−07	[ac:s57618:a47097:s26479] [pn:pbp5-control factor psr] [gn:psr] [or: enterococcus
							hirae ] [db:pir]
31261593_f3_5	1520	4123	804	267	801	7.70E−80	[ac:q46845] [gn:yghu] [or: escherichia coli ] [de:hypothetical 34.2 kd protein in gsp-hybg
							intergenic region] [sp:q46845] [db:swissprot]
31263_f2_28	1521	4124	1338	445	81	0.77	[ln:hsu40347] [ac:u40347] [pn:serotonin n-acetyltransferase] [or: homo sapiens ]
							[sr:human] [db:genpept-pri2] [ec:2.3.1.87] [de:human serotonin n-acetyltransferase
							mrna, complete cds.] [nt:arylalkylamine n-acetyltransferase] [le:235] [re:858] [di:direct]
31276015_c3_4	1522	4125	888	295	58	0.93	[ln:hiu04997] [ac:u04997] [pn:uvra] [gn:uvra] [fn:dna excision repair] [or: haemophilus
							influenzae ] [db:genpept-bct] [de: haemophilus influenzae tn106 dna excision repair
							protein (uvra)gene, partial cds, and single-stranded dna binding protein (ssb)gene, co
3129693_f2_13	1523	4126	321	106	80	0.035	[ln:adu92286] [ac:u92286] [pn:pyrroline-5-carboxylate synthetase] [or: actinidia
							deliciosa ] [db:genpept-pln] [de: actinidia deliciosa pyrroline-5-carboxylate synthetase
							mrna,complete cds.] [le:9] [re:2162] [di:direct]
31297086_f2_9	1524	4127	888	295	354	1.80E−32	[ac:q02473] [gn:prtm] [or: lactobacillus paracasei ] [de:protease maturation protein
							precursor] [sp:q02473] [db:swissprot]
31339590_f1_8	1525	4128	273	90	66	0.057	[ac:d49786] [pn:bacteriocin precursor a1] [or: lactococcus lactis subsp. cremoris ]
31366317_c1_35	1526	4129	255	84	89	0.00022	[ac:e64801] [pn:hypothetical protein b0663] [or: escherichia coli ] [db:pir]
31385814_c2_10	1527	4130	518	172	771	1.20E−76	[ac:p45293] [gn:hi1647] [or: haemophilus influenzae ] [de:hypothetical protein hi1647]
							[sp:p45293] [db:swissprot]
31412930_f2_5	1528	4131	567	188	416	4.80E−39	[ac:s49402:s38204] [pn:atpx protein] [gn:atpx] [or: streptococcus pneumoniae ] [db:pir]
31429530_c3_40	1529	4132	1350	449	1183	2.50E−120	[ac:a69763] [pn:homoserine dehydrogenase homolog yclm] [gn:yclm] [or: bacillus
							subtilis ] [db:pir]
31448505_f1_8	1530	4133	1041	346	1167	1.30E−118	[ac:p55180] [gn:gale] [or: bacillus subtilis ] [ec:5.1.3.2] [de:galactose 4-epimerase)]
							[sp:p55180] [db:swissprot]
31448577_c1_171	1531	4134	213	70	70	0.022	[ac:p54323] [gn:sdh4:sdhd] [or: chondrus crispus ] [sr:,carragheen] [de:dehydrogenase,
							subunit iv)] [sp:p54323] [db:swissprot]
31484567_c3_53	1532	4135	219	72	68	0.0099	[ln:atceld] [ac:z77855] [pn:sugar-binding transport protein] [or: anaerocellum
							thermophilum ] [db:genpept-bct] [de: a.thermophilum celd gene.] [nt:putative] [le:3925]
							[re:4836] [di:direct]
31509756_f2_5	1533	4136	1107	368	537	7.30E−52	[ac:p46348] [gn:yeab] [or: bacillus subtilis ] [de:hypothetical 31.8 kd protein in gabp-
							guaa intergenic region (orfx)] [sp:p46348] [db:swissprot]
3151432_c1_83	1534	4137	282	93	192	3.80E−14	[ac:a56034] [pn:insulin activator factor] [or: homo sapiens ] [sr:, man] [db:pir]
3156533_f1_1	1535	4138	192	63	47	0.44	[ln:s80082] [ac:s80082] [pn:gag] [gn:gag] [or: mus musculus ] [sr:house mouse mrv evi-
							2 murine aids virus-related provirus] [db:genpept-rod] [de:gag...env {provirus} [ mus
							musculus , mrv, evi-2, murine aidsvirus-related provirus, genomic mutant, 3 genes, 4765
3162813_c1_24	1536	4139	1356	451	962	6.70E−97	[ln:llu81486] [ac:u81486] [pn:histidine kinase] [gn:llkinc] [or: lactococcus lactis
							cremoris ] [db:genpept-bct] [de: lactococcus lactis subsp. cremoris mg1363 histidine
							kinase (llkinc)gene, complete cds.] [le:1] [re:1428] [di:direct]
31647556_f1_1	1537	4140	297	98	453	5.80E−43	[ln:stu88973] [ac:u88973] [pn:ribosomal protein 119] [or: streptococcus thermophilus ]
							[db:genpept-bct] [de: streptococcus thermophilus ribosomal protein 119 gene,
							completecds; and trna-arg gene, complete sequence.] [le:152] [re:499] [di:direct]
31657075_f1_1	1538	4141	729	242	319	9.20E−29	[ac:p54505] [gn:yqhb] [or: bacillus subtilis ] [de:hypothetical 50.0 kd protein in soda-
							comga intergenic region] [sp:p54505] [db:swissprot]
31686_f1_1	1539	4142	1734	577	1962	7.20E−203	[ac:q02137] [gn:ilvb] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:4.1.3.18] [de:(acetohydroxy-acid synthase large subunit) (als)] [sp:q02137]
							[db:swissprot]
31722843_f1_1	1540	4143	975	324	201	1.60E−13	[ac:p03211] [gn:bkrf1] [or:epstein-barr virus] [sr:b95-8,human herpesvirus 4] [de:ebna-
							1 nuclear protein] [sp:p03211] [db:swissprot]
31737665_f1_1	1541	4144	291	96	246	5.00E−21	[ln:lmu66186] [ac:u66186] [pn:lema] [gn:lema] [or: listeria monocytogenes ]
							[db:genpept-bct] [de: listeria monocytogenes lema (lema) gene, complete cds, and
							lemb(lemb) gene, partial cds.] [nt:putative cytoplasmic membrane protein with nout-
31739683_c1_11	1542	4145	252	83	92	0.0001	[ac:s01844] [pn:fibroin] [cl:silk fibroin] [or: bombyx mori ] [sr:, silkworm] [db:pir]
31741450_f1_1	1543	4146	183	60	60	0.25	[ac:p54462] [gn:yqev] [or: bacillus subtilis ] [de:hypothetical 51.7 kd protein in dnaj-rpsu
							interegenic region] [sp:p54462] [db:swissprot]
31801707_f2_34	1544	4147	660	219	1235	7.90E−126	[ac:p06653] [gn:lyta] [or: streptococcus pneumoniae ] [ec:3.5.1.28] [de:hydrolase)
							(mucopeptide aminohydrolase) (cell wall hydrolase)] [sp:p06653] [db:swissprot]
31806275_f3_19	1545	4148	561	186	857	8.90E−86	[ac:p29850] [gn:malx] [or: streptococcus pneumoniae ] [de:maltose/maltodextrin-binding
							protein precursor] [sp:p29850] [db:swissprot]
31806563_f1_3	1546	4149	1224	407	294	2.00E−25	[ac:jc5326] [pn:methicillin resistance factor femb] [gn:femb] [or: staphylococcus
							epidermidis ] [db:pir]
31836643_f2_4	1547	4150	864	287	80	0.98	[ac:p47491:q49487] [gn:rpod:siga:mg249] [or: mycoplasma genitalium ] [de:rna
							polymerase sigma factor rpod (sigma-a)] [sp:p47491:q49487] [db:swissprot]
31836687_f3_15	1548	4151	771	256	756	4.50E−75	[ac:q58418] [gn:pstb:mj1012] [or: methanococcus jannaschii ] [de:probable phosphate
							transport atp-binding protein pstb] [sp:q58418] [db:swissprot]
31900 —f1 _1	1549	4152	498	165	187	8.90E−15	[ac:a69795] [pn:conserved hypothetical protein yerl] [gn:yerl] [or: bacillus subtilis ]
							[db:pir]
31906688_f1_3	1550	4153	195	64	48	0.074	[ac:p29704] [gn:erg9:yhr190w] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[ec:2.5.1.21] [de:synthetase) (sqs) (ss) (fpp:fpp farnesyltransferase)] [sp:p29704]
							[db:swissprot]
31908561_c1_42	1551	4154	198	65	65	0.3	[ac:e64627] [pn:hypothetical protein hp0861] [or: helicobacter pylori ] [db:pir]
32034837_f1_1	1552	4155	4962	1653	133	2.80E−12	[ac:p49610] [gn:strh] [or: streptococcus pneumoniae ] [ec:3.2.1.52] [de:beta-n-
							acetylhexosaminidase precursor,] [sp:p49610] [db:swissprot]
32039212_f3_27	1553	4156	678	225	630	1.00E−61	[ac:h69334] [pn:glutamine abc transporter, atp-binding protein (glnq) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
32040962_f2_9	1554	4157	657	218	321	5.60E−29	[ac:s68596:s65576] [pn:negative regulator phou] [gn:phou] [or: pseudomonas
							aeruginosa ] [db:pir]
32062587_c1_16	1555	4158	213	10	65	0.49	[ln:cezk896] [ac:z82288] [pn:zk896.9] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid zk896, complete sequence.] [nt:similarity to mouse
							cmp-sialic acid transporter] [le:3686:3862:4541:5970] [re:3808:3944:4805:6138]
							[di:dire
32087777_f3_34	1556	4159	867	288	793	5.40E−79	[ac:p44990] [gn:sgbu:hi1026] [or: haemophilus influenzae ] [ec:5.—.—.—] [de:putative
							hexulose-6-phosphate isomerase, (humpi)] [sp:p44990] [db:swissprot]
3209776_c3_23	1557	4160	471	156	100	0.00032	[ln:ehu67063] [ac:u67063] [pn:serine rich protein] [gn:srehp] [or: entamoeba histolytica ]
							[db:genpept-inv] [de: entamoeba histolytica serine rich protein (srehp) mrna, partialcds.]
							[nt:k2 transcript; new isoform] [le:<1] [re:515] [di:direct]
3210840_f2_20	1558	4161	783	260	513	2.50E−49	[ac:p17894:p19671] [gn:recn] [or: bacillus subtilis ] [de:dna repair protein recn
							(recombination protein n)] [sp:p17894:p19671] [db:swissprot]
32156430_c3_35	1559	4162	189	62	54	0.67	[ln:af035166] [ac:af035166] [pn:nadh dehydrogenase subunit 41] [gn:nd41]
							[or: mitochondrion branchiostoma floridae ] [sr: florida lancelet ] [db:genpept-inv]
							[de: branchiostoma floridae nadh dehydrogenase subunit 41 (nd41) gene,mitochondrial
							gene encoding mito
32204067_f2_9	1560	4163	483	160	270	1.40E−23	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
3220626_c3_55	1561	4164	3210	1069	4162	0	[ln:llaj109] [ac:aj000109] [pn:carbamoylphosphate synthetase] [gn:carb]
							[or: lactococcus lactis ] [db:genpept-bct] [de: lactococcus lactis carb and gpo genes.]
							[le:986] [re:4180] [di:direct]
32210827_c1_62	1562	4165	1158	385	1132	6.50E−115	[ac:p37469] [gn:dnac] [or: bacillus subtilis ] [ec:3.6.1.—] [de:replicative dna helicase,]
							[sp:p37469] [db:swissprot]
32222752_f1_7	1563	4166	858	285	182	3.50E−14	[ac:q58322] [gn:mj0912] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj0912] [sp:q58322] [db:swissprot]
3225325_c3_44	1564	4167	291	96	100	1.50E−05	[ln:lsplcprf] [ac:x97014] [pn:ribose-phosphate pyrophosphokinase] [gn:prs] [or: listeria
							seeligeri ] [db:genpept-bct] [ec:2.7.6.1] [de: l.sceligeri dna for plca/prfa operon.] [le:<1]
							[re:262] [di:direct]
32287816_c2_47	1565	4168	450	149	47	0.046	[ln:flanald] [ac:k01018] [or:influenza a virus] [sr:influenza a/duck/alberta/60/76, cdna
							to viral rna, grown i] [db:genpept-vrl] [de:influenza a/duck/alberta/60/76 (h12n5),
							neuraminidase (seg 6), 5′end.] [nt:neuraminidase] [le:21] [re:
3242200_f1_7	1566	4169	1221	406	1115	4.10E−113	[ac:p37877] [gn:acka] [or: bacillus subtilis ] [ec:2.7.2.1] [de:acetate kinase,
							(acetokinase)] [sp:p37877] [db:swissprot]
32429693_c3_112	1567	4170	564	187	328	1.00E−29	[ac:p54452] [gn:yqeg] [or: bacillus subtilis ] [de:hypothetical 20.1 kd protein in nucb-
							arod intergenic region] [sp:p54452] [db:swissprot]
32456966_c1_11	1568	4171	294	97	53	1	[ac:p41806] [gn:vma21:ygr105w] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:vacuolar atpase assembly integral membrane protein vma21] [sp:p41806]
							[db:swissprot]
32462550_c2_36	1569	4172	549	182	379	4.00E−35	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
32507342_f2_11	1570	4173	1023	340	646	2.00E−63	[ac:a70032] [pn:conserved hypothetical protein yvck] [gn:yvck] [or: bacillus subtilis ]
							[db:pir]
32611510_f1_9	1571	4174	276	91	65	0.25	[ac:p12974] [gn:mcrd] [or: methanothermus fervidus ] [de:methyl-coenzyme m reductase
							operon protein d] [sp:p12974] [db:swissprot]
32614786_c3_16	1572	4175	429	142	105	1.40E−06	[ln:cru73817] [ac:u73817] [gn:lrg5] [or: chlamydomonas reinhardtii ] [db:genpept-pln]
							[de: chlamydomonas reinhardtii lrg5 mrna, complete cds.] [le:112] [re:2034] [di:direct]
32660750_c1_8	1573	4176	648	215	1012	3.40E−102	[ln:af010151] [ac:af010151] [pn:pscn] [gn:pscn] [or: pseudomonas aeruginosa ]
							[db:genpept-bct] [de: pseudomonas aeruginosa pscn (pscn) gene, complete cds, and
							psco(psco) gene, partial cds.] [le:94] [re:1416] [di:direct]
32661051_f1_5	1574	4177	363	120	581	1.60E−56	[ac:q54513] [or: streptococcus pneumoniae ] [de:transposase for insertion sequence
							is1202] [sp:q54513] [db:swissprot]
32678307_c2_192	1575	4178	252	83	67	0.045	[ln:ysccen4] [ac:m13000] [pn:unknown protein] [or: saccharomyces cerevisiae ]
							[sr: saccharomyces cerevisiae (strain s288c) (clone:lambda-53-sc4130] [db:genpept-pln]
							[de:yeast ( s.cerevisiae ) chromosome 4 centromere (cen4) dna.] [nt:orfa; putative]
							[le:<1] [r
32708275_f1_1	1576	4179	192	63	287	2.30E−25	[ac:p27078] [gn:int] [or:bacteriophage 434] [de:integrase] [sp:p27078] [db:swissprot]
32710883_c1_21	1577	4180	234	77	160	6.50E−12	[ac:h70010] [pn:polyribonucleotide nucleotidyltransferase homolog yugi] [gn:yugi]
							[or: bacillus subtilis ] [db:pir]
32785_f1_48	1578	4181	924	307	105	2.20E−05	[ac:c48653] [pn:hypothetical protein 3 (pip 3′ region)] [or: lactococcus lactis subsp.
							lactis ] [db:pir]
3303827_f1_1	1579	4182	402	133	68	0.044	[ac:a61355] [pn:hypothetical protein] [or:chloroplast euglena gracilis ] [db:pir]
3314062_c3_77	1580	4183	198	65	155	2.20E−11	[ac:s78492] [gn:orf1 5′ of glgb homolog] [or: streptococcus mutans ] [sr: streptococcus
							mutans sms202] [db:genpept-bct] [de:glg operon:glgb homolog {promoter}
							[ streptococcus mutans , sms202,genomic mutant, 2400 nt].] [le:907] [re:1063] [di:direct]
3316067_c3_76	1581	4184	1518	505	2283	6.90E−237	[ac:p50099] [gn:guab] [or: streptococcus pyogenes ] [ec:1.1.1.205] [de:dehydrogenase)
							(impdh) (impd)] [sp:p50099] [db:swissprot]
33203130_f1_4	1582	4185	228	75	63	0.16	[ln:ictighvm] [ac:m58673] [pn:immunoglobulin heavy chain v-region] [or: ictalurus
							punctatus ] [sr: i.punctatus , cdna to mrna] [db:genpept-vrt] [de: i.punctatus ig heavy chain
							mrna v-region, clone ng64.] [le:56] [re:
33204442_c1_9	1583	4186	486	161	81	0.0024	[ln:ab001684] [ac:ab001684] [gn:trng] [or:chloroplast chlorella vulgaris ] [sr: chlorella
							vulgaris chloroplast dna] [db:genpept-pln] [de: chlorella vulgaris c-27 chloroplast dna,
							complete sequence.] [nt:orf42c] [le:92172] [re:92300] [di:complement]
33204568_f3_39	1584	4187	1290	429	1014	3.30E−132	[ac:s74347] [pn:hypothetical protein slr0049] [or:synechocystis sp.] [sr:pcc 6803, , pcc
							6803] [sr:pcc 6803,] [db:pir]
33204787_f3_34	1585	4188	297	98	72	0.1	[ac:q57864] [gn:mj0421] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj0421] [sp:q57864] [db:swissprot]
3323768_c1_34	1586	4189	858	285	101	5.20E−05	[ln:xlu74761] [ac:u74761] [pn:nocturnin] [or: xenopus laevis ] [sr:african clawed frog]
							[db:genpept-vrt] [de: xenopus laevis nocturnin mrna, complete cds.] [le:36] [re:1202]
							[di:direct]
3324086_f3_11	1587	4190	252	83	88	6.90E−05	[ln:ab000222] [ac:ab000222] [gn:epr] [fn:glycylglycine endopeptidase resistance]
							[or: staphylococcus capitis ] [sr: staphylococcus capitis dna] [db:genpept-bct]
							[de: staphylococcus capitis epr gene, complete cds.] [le:426] [re:1667] [di:direct]
33245887_f1_3	1588	4191	744	247	437	2.90E−41	[ac:p44202] [gn:hi1454] [or: haemophilus influenzae ] [de:hypothetical cytochrome c-
							type biogenesis protein hi1454] [sp:p44202] [db:swissprot]
33258442_c1_22	1589	4192	1230	409	743	1.10E−73	[ac:p31851] [gn:taba] [or: pseudomonas syringae ] [sr:,pvtabaci] [de:taba protein]
							[sp:p31851] [db:swissprot]
33258577_c1_33	1590	4193	2163	720	2528	7.60E−263	[ac:p27756] [gn:aga] [or: streptococcus mutans ] [ec:3.2.1.22] [de:alpha-galactosidase,
							(melibiase)] [sp:p27756] [db:swissprot]
33283133_c1_22	1591	4194	255	84	153	3.60E−11	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
33287882_c1_53	1592	4195	504	167	125	3.30E−08	[ln:ll16srna] [ac:x65713] [or: lactococcus lactis ] [db:genpept-bct] [de: l.lactis promoter
							region of 16s rrna gene (5′end).] [nt:orf] [le:<1] [re:468] [di:direct]
33297162_f2_38	1593	4196	639	212	87	0.52	[ac:s33442] [pn:ef protein] [or: streptococcus suis ] [db:pir]
33298532_f2_10	1594	4197	618	205	694	1.70E−68	[ac:p38424] [gn:ysxc] [or: bacillus subtilis ] [de:(orfx)] [sp:p38424] [db:swissprot]
33303307_f3_21	1595	4198	222	73	66	0.088	[ac:q80920] [gn:e6] [or:human papillomavirus type 48] [de:e6 protein] [sp:q80920]
							[db:swissprot]
33306281_c2_75	1596	4199	474	157	253	9.00E−22	[ac:h69772] [pn:holo-acyl-carrier protein synthase homolog ydcb] [gn:ydcb]
							[or: bacillus subtilis ] [db:pir]
33307752_f2_3	1597	4200	660	219	499	7.70E−48	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
33307906_c2_65	1598	4201	294	97	71	0.017	[ac:d69905] [pn:hypothetical protein yoed] [gn:yoed] [or: bacillus subtilis ] [db:pir]
33328557_f1_5	1599	4202	812	271	59	0.84	[ln:ricmtnad] [ac:d32052] [pn:orf72] [or: mitochondrion oryza sativa ] [sr: mitochondrion
							oryza sativa (organelle mitochondrion oryza sativa ] [db:genpept-pln] [de: mitochondrion
							oryza sativa genes for nadh dehydrogenase subunits,ribosomal proteins and trna-fm
33329692_f2_25	1600	4203	210	69	63	0.29	[ln:spbc19g7] [ac:a1021839] [pn:hypothetical protein] [gn:spbc19g7.17]
							[or: schizosaccharomyces pombe ] [sr:fission yeast] [db:genpept] [de: s.pombe
							chromosome ii cosmid c19g7.] [nt:spbc19g7.17, (partial) protein transport protein,]
							[le:36807:36868:37005:371
33339200_f2_7	1601	4204	756	251	485	2.30E−46	[ac:p54461] [gn:yqeu] [or: bacillus subtilis ] [de:hypothetical 28.8 kd protein in dnaj-rpsu
							interegenic region] [sp:p54461] [db:swissprot]
3335802_c1_8	1602	4205	231	76	65	0.073	[ln:ysctgysup] [ac:m87272] [or: saccharomyces cerevisiae ] [sr: saccharomyces cerevisiae
							dna] [db:genpept-pln] [de:yeast ochre suppressor transfer rna-tyr (trna-tyr) gene,
							andpartial orf.] [nt:orf; no protein homologies to this open reading] [le:<1] [re:335]
33359377_c2_31	1603	4206	1701	566	1225	9.00E−125	[ac:p50976] [gn:lace] [or: streptococcus mutans ] [ec:2.7.1.69] [de:(ec 2.7.1.69) (eii-lac)]
							[sp:p50976] [db:swissprot]
33365650_f2_14	1604	4207	849	282	127	4.80E−06	[ac:e69787] [pn:hypothetical protein ydil] [gn:ydil] [or: bacillus subtilis ] [db:pir]
33366557_c2_26	1605	4208	246	81	59	0.86	[ac:p33618] [gn:csnk] [or: oryctolagus cuniculus ] [sr:,rabbit] [de:kappa casein
							precursor] [sp:p33618] [db:swissprot]
33366687_c2_25	1606	4209	204	67	56	0.49	[ln:vibvci284] [ac:d11122] [pn:incomplete protein of the rfbt gene product] [gn:rfbt2]
							[or: vibrio cholerae ] [sr: vibrio cholerae (strain 47-4041-1, biotype classical, serotyp]
							[db:genpept-bct] [de: v. cholerae rfbt2 gene for ogawa specific antigen in the ca
33367087_f3_12	1607	4210	684	227	830	6.50E−83	[ln:ctsialida] [ac:y08695] [pn:putative acylneuraminate lyase] [or: clostridium tertium ]
							[db:genpept-bct] [ec:4.1.3.3] [de: clostridium tertium nanh gene.] [nt:monomer]
							[le:2481] [re:
33384643_f1_3	1608	4211	1725	574	755	5.70E−75	[ac:e64556] [pn:para-aminobenzoate synthetase] [or: helicobacter pylori ] [db:pir]
33388_c3_22	1609	4212	225	74	76	0.0051	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
33395338_c2_39	1610	4213	1191	396	793	5.40E−79	[ac:d70006] [pn:conserved hypothetical protein yuba] [gn:yuba] [or: bacillus subtilis ]
							[db:pir]
33397577_f1_4	1611	4214	4392	1463	3591	0	[ac:p13267] [gn:polc:dnae:dnaf:muti] [or: bacillus subtilis ] [ec:2.7.7.7] [de:dna
							polymerase iii, alpha chain,] [sp:p13267] [db:swissprot]
33398587_c2_54	1612	4215	654	217	338	8.90E−31	[ac:d69433] [pn:abc transporter, atp-binding protein homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
33401902_c3_42	1613	4216	546	181	159	8.30E−12	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
33402203_c1_82	1614	4217	663	220	300	9.40E−27	[ac:b69616] [pn:cell-division initiation protein (septum placement) diviva] [gn:diviva]
							[or: bacillus subtilis ] [db:pir]
33406437_f2_4	1615	4218	186	61	110	1.30E−06	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
33406562_f2_14	1616	4219	321	106	114	1.80E−06	[ln:ssu38915] [ac:u38915] [pn:putative transposase] [or:synechocystis pcc6803]
							[db:genpept-bct] [de:synechocystis sp. insertion sequences is5sb, is4sa and mariner-
							likeinsertion sequence istcsa, lytb gene, complete cds, and putativetransposase genes,
							parti
33414067_c2_61	1617	4220	726	241	390	2.70E−36	[ac:d70044] [pn:transcriptional regulator (gntr family) homolog yvoa] [gn:yvoa]
							[or: bacillus subtilis ] [db:pir]
33417202_c3_81	1618	4221	1011	336	991	5.60E−100	[ac:f69786] [pn:glycoprotein endopeptidase homolog ydie] [gn:ydie] [or: bacillus
							subtilis ] [db:pir]
33454390_f3_21	1619	4222	873	290	1356	1.20E−138	[ln:ab007465] [ac:ab007465] [pn:dna gyrase subunit a] [gn:gyra coding region encoding
							for dna gyrase subunit] [or: streptococcus thermophilus ] [sr: streptococcus thermophilus
							(strain:m-192) dna] [db:genpept-bct] [de: streptococcus thermophilus gene for dna g
33470275_f2_37	1620	4223	858	285	1357	9.30E−139	[ln:spdnagcpo] [ac:y11463] [gn:cpoa] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae dnag, rpod, cpoa genes and orf3 and orf5.] [le:2160]
							[re:3176] [di:direct]
33470888_c3_52	1621	4224	789	262	611	1.00E−59	[ln:laclacr] [ac:m35375] [or: lactococcus lactis ] [sr: l.lactis (strain mg1820) dna]
							[db:genpept-bct] [de: l.lactis lactose phosphotransferase system repressor (lacr)
							gene,complete cds.] [nt:lactose repressor (lacr; alt.)] [le:370] [re:1155] [di:direct]
33475007_f3_11	1622	4225	753	250	1112	8.50E−113	[ln:sau61271] [ac:u61271] [pn:glutamine synthetase type 1] [gn:glna] [or: streptococcus
							agalactiae ] [db:genpept-bct] [de: streptococcus agalactiae glutamine synthetase type 1
							(glna) gene,complete cds.] [le:40] [re:1389] [di:direct]
33492135_c3_79	1623	4226	834	277	278	2.00E−24	[ac:q01466] [gn:mrec] [or: bacillus subtilis ] [de:rod shape-determining protein mrec]
							[sp:q01466] [db:swissprot]
33603462_c2_63	1624	4227	1338	445	2202	2.70E−228	[ac:s49545] [pn:histidine kinase] [cl:sensor histidine kinase homology]
							[or: streptococcus pneumoniae ] [db:pir]
33617880_f3_19	1625	4228	342	113	542	2.10E−52	[ln:spadca] [ac:z71552] [pn:abc protein] [gn:adcc] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae adccba operon.] [le:20] [re:721]
							[di:direct]
33620256_f1_12	1626	4229	234	77	69	0.028	[ac:s43483] [pn:hypothetical protein] [or: escherichia coli ] [db:pir]
33620712_c2_106	1627	4230	690	229	157	4.40E−10	[ac:p39402] [gn:yjjp] [or: escherichia coli ] [de:hypothetical 30.5 kd protein in dnat-bglj
							intergenic region (f277)] [sp:p39402] [db:swissprot]
33625828_c1_12	1628	4231	2127	708	125	0.00044	[ac:p45386] [gn:iga] [or: haemophilus influenzae ] [ec:3.4.21.72] [de:immunoglobulin al
							protease precursor, (iga1 protease)] [sp:p45386] [db:swissprot]
33625925_f2_7	1629	4232	480	159	167	1.20E−12	[ac:p39335] [gn:yjgk] [or: escherichia coli ] [de:hypothetical 17.3 kd protein in pyrl-argi
							intergenic region (o153b)] [sp:p39335] [db:swissprot]
33632902_f3_30	1630	4233	759	252	391	2.10E−36	[ac:p39593] [gn:thim:thik:ipa-25d] [or: bacillus subtilis ] [ec:2.7.1.50]
							[de:hydroxyethylthiazole kinase) (thz kinase) (th kinase)] [sp:p39593] [db:swissprot]
33633382_c3_76	1631	4234	1221	406	376	8.30E−35	[ln:lslasampt] [ac:z54312] [pn:unknown] [gn:orf414] [or: lactobacillus sake ]
							[db:genpept-bct] [de: l.sake las[a,m,p,t] genes.] [le:7331] [re:8575] [di:direct]
33673576_c2_7	1632	4235	258	85	62	0.15	[ln:vv18r] [ac:x76267] [or:variola virus] [db:genpept-vrl] [de:variola virus (garcia-1966)
							18r,i1l,i3r,i2l,i4l,i5r,i5.5r,i6r,i7l,i8r,i9r,n1r,n2r,n3l,n4r and n5r genes.] [nt:orf16r]
							[le:12684] [re:
33690903_f1_8	1633	4236	189	62	61	0.68	[ln:atrpc115] [ac:z11507] [pn:plastid ribosomal protein c115] [gn:rp115] [or: arabidopsis
							thaliana ] [sr: thale cress ] [db:genpept-pln] [de: a.thaliana mrna for plastid ribosomal
							protein c115.] [nt:the gene encoding plastid ribosomal protein c115 is] [sp:p258
3369438_f2_15	1634	4237	1152	383	307	1.60E−38	[ac:h69980] [pn:single-strand dna-specific exonuclease homolog yrve] [gn:yrve]
							[or: bacillus subtilis ] [db:pir]
3370312_f1_7	1635	4238	729	242	409	8.10E−38	[ln:spoppdaca] [ac:x89237] [pn:oligopeptidepermease] [gn:oppa] [or: streptococcus
							pyogenes ] [db:genpept-bct] [de: s.pyogenes dna for oppa, oppb, oppc, oppd, oppf, and
							daca genes.] [le:1382] [re:3352] [di:direct]
33703791_f3_34	1636	4239	780	259	860	4.30E−86	[ac:q01328] [gn:pcp] [or: streptococcus pyogenes ] [ec:3.4.19.3] [de:peptidase)
							(pyroglutamyl-peptidase i)] [sp:q01328] [db:swissprot]
33708501_c3_13	1637	4240	243	80	68	0.11	[ln:pop22nin] [ac:x78401] [pn:ning protein] [or:bacteriophage p22] [db:genpept-phg]
							[de:bacteriophage p22 right operon, orf48, replication genes 18 and12, nin region
							genes, ning phosphatase, late control gene 23, orf60, complete cds, late control region,
33710337_c2_181	1638	4241	273	90	66	0.057	[ac:p24716] [gn:copr] [or: streptococcus agalactiae ] [de:plasmid copy control protein
							copr] [sp:p24716] [db:swissprot]
33720713_c1_92	1639	4242	516	171	585	5.90E−57	[ac:s39974] [pn:hypothetical protein] [or: streptococcus equisimilis ] [db:pir]
33751675_f1_1	1640	4243	546	181	810	8.50E−81	[ac:p23495] [gn:lacb] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ] [ec:5.—
							.—.—] [de:galactose-6-phosphate isomerase lacb subunit,] [sp:p23495] [db:swissprot]
3375306_f3_11	1641	4244	276	91	145	6.20E−10	[ln:cju93169] [ac:u93169] [pn:outer membrane protein] [gn-omph1] [or: campylobacter
							jejuni ] [db:genpept-bct] [de: campylobacter jejuni outer membrane protein (omph1)
							gene, completecds.] [nt:glutamine binding protein analog] [le:164] [re:1003] [di:direct]
33756278_f1_10	1642	4245	309	102	73	0.38	[ln:mmu96724] [ac:u96724] [pn:putative phosphoinositide 5-phosphatase type ii]
							[or: mus musculus ] [sr:house mouse] [db:genpept-rod] [de: mus musculus putative
							phosphoinositide 5-phosphatase type ii mrna,complete cds.] [le:112] [re:1518]
							[di:direct]
33777138_f1_5	1643	4246	738	245	362	2.50E−33	[ac:p33918] [gn:yejd] [or: escherichia coli ] [de:hypothetical 25.9 kd protein in bcr-rply
							intergenic region] [sp:p33918] [db:swissprot]
33782675_f3_2	1644	4247	231	76	262	9.00E−22	[ac:p22976] [gn:recp] [or: streptococcus pneumoniae ] [ec:2.2.1.1] [de:probable
							transketolase, (tk)] [sp:p22976] [db:swissprot]
33788562_f1_12	1645	4248	312	103	134	3.00E−08	[ln:af015453] [ac:af015453] [pn:unknown] [or: lactobacillus rhamnosus ] [db:genpept-
							bct] [de: lactobacillus rhamnosus 6-phospho-beta-glucosidase homolog gene,partial cds;
							gntr transcriptional regulator homolog and surfacelocated protein genes, complete cds.]
33789067_f1_2	1646	4249	780	259	711	2.60E−70	[ac:q57060:o05007] [gn:hi0095] [or: haemophilus influenzae ] [de:hypothetical protein
							hi0095] [sp:q57060:o05007] [db:swissprot]
33790942_f3_12	1647	4250	459	152	181	3.80E−14	[ac:g70031] [pn:mutator mutt protein homolog yvci] [gn:yvci] [or: bacillus subtilis ]
							[db:pir]
33797040_f2_5	1648	4251	462	153	72	0.023	[ac:d69273] [pn:conserved hypothetical protein af0188] [or: archaeoglobus fulgidus ]
							[db:pir]
33807808_f1_1	1649	4252	1101	366	61	0.11	[ln:ssz97384] [ac:z97384] [gn:sla-3] [or: sus scrofa ] [sr:pig] [db:genpept-mam] [de: sus
							scrofa sla-3 gene, exon 2 (partial).] [nt:mhc class i gene] [le:<1] [re:
33828181_f3_42	1650	4253	210	69	66	0.065	[ln:ehy14328] [ac:y14328] [pn:3e1 protein] [or: entamoeba histolytica ] [db:genpept-inv]
							[de: entamoeba histolytica mrna for 3e1 protein.] [le:32] [re:418] [di:direct]
33860150_f3_15	1651	4254	1035	344	911	1.70E−91	[ac:h69679] [pn:involved in fatty acid/phospholipid synthesis plsx] [gn:plsx]
							[or: bacillus subtilis ] [db:pir]
3397825_f1_3	1652	4255	3651	1216	4244	0	[ac:p37870] [gn:rpob:rfm:crse] [or: bacillus subtilis ] [ec:2.7.7.6] [de:beta chain) (rna
							polymerase beta subunit)] [sp:p37870] [db:swissprot]
33984687_f2_27	1653	4256	1308	435	1036	9.60E−105	[ac:f69723] [pn:trigger factor (prolyl isomerase) tig] [gn:tig] [or: bacillus subtilis ]
							[db:pir]
33985687_f2_12	1654	4257	1107	368	582	1.20E−56	[ac:p20966] [gn:frua:ptsf] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69) (eii-fru)]
							[sp:p20966] [db:swissprot]
33986075_c1_44	1655	4258	342	113	126	2.60E−08	[ac:q45399] [gn:cela] [or: bacillus stearothermophilus ] [ec:2.7.1.69] [de:(ec 2.7.1.69)]
							[sp:q45399] [db:swissprot]
33991517_f2_16	1656	4259	561	186	586	4.70E−57	[ac:p42369] [gn:grpe] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[de:grpe protein] [sp:p42369] [db:swissprot]
33992812_f2_22	1657	4260	2076	691	706	9.00E−70	[ac:e70040] [pn:conserved hypothetical protein yvgp] [gn:yvgp] [or: bacillus subtilis ]
							[db:pir]
33994042_f2_27	1658	4261	618	206	549	3.90E−53	[ac:p39300] [gn:yjfr] [or: escherichia coli ] [de:hypothetical 40.3 kd protein in aidb-rpsf
							intergenic region (f356)] [sp:p39300] [db:swissprot]
34001338_c1_35	1659	4262	873	290	1174	2.30E−119	[ac:q00751] [gn:msmg] [or: streptococcus mutans ] [de:multiple sugar-binding transport
							system permease protein msmg] [sp:q00751] [db:swissprot]
34008443_c2_33	1660	4263	384	127	145	2.50E−10	[ac:s52344] [pn:hypothetical protein] [or: lactococcus lactis ] [db:pir]
3402187_c2_68	1661	4264	366	121	85	0.015	[ac:q91085] [or: meleagris gallopavo ] [sr:,common turkey] [de:(fragment)] [sp:q91085]
							[db:swissprot]
34023382_f2_10	1662	4265	765	254	585	5.90E−57	[ac:p28643] [gn:clkr27] [or: cuphea lanceolata ] [ec:1.1.1.100] [de:(3-ketoacyl-acyl
							carrier protein reductase)] [sp:p28643] [db:swissprot]
34023441_f1_2	1663	4266	711	236	356	1.10E−32	[ac:c69859] [pn:two-component response regulator [ykoh] homolog ykog] [gn:ykog]
							[or: bacillus subtilis ] [db:pir]
34024057_f3_38	1664	4267	3720	1239	4515	0	[ln:sprpocgen] [ac:x96385] [pn:dna-dependent rna polymerase] [gn:rpoc]
							[or: streptococcus pyogenes ] [db:genpept-bct] [ec:2.7.7.6] [de: s.pyogenes rpoc gene.]
							[nt:b′ subunit] [le:<1] [re:
34037778_c2_77	1665	4268	261	86	62	0.11	[ln:pcpallex2] [ac:x16772] [or: petroselinum crispum ] [sr:parsley] [db:genpept-pln]
							[de: p.crispum pal-1 gene for phenylalanine ammonia-lyase exon 2.] [nt:phenylalanine
							ammonia-lyase (aa 137 - 716) (1 is] [sp:p24481] [le:<1] [re:1744] [di:direct]
34037778_c3_30	1666	4269	252	83	71	0.36	[ln:cec29e6] [ac:z72504] [pn:c29e6.4] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid c29e6, complete sequence.]
							[le:15816:15929:16114:16409] [re:15878:16066:16346:16497] [di:directjoin]
34039692_f3_35	1667	4270	915	304	509	6.70E−49	[ac:p31437] [gn:yicl] [or: escherichia coli ] [de:hypothetical 33.1 kd protein in selc-nlpa
							intergenic region] [sp:p31437] [db:swissprot]
34042340_f1_2	1668	4271	519	172	87	0.035	[ac:p13857] [gn:riml] [or: escherichia coli ] [ec:2.3.1.—] [de:enzyme for n-terminal of
							ribosomal protein 17/112)] [sp:p13857] [db:swissprot]
34064062_f2_2	1669	4272	462	154	452	7.40E−43	[ac:q54433] [gn:dfp] [or: streptococcus mutans ] [de:dna/pantothenate metabolism
							flavoprotein homolog (fragment)] [sp:q54433] [db:swissprot]
34064417_f3_2	1670	4273	582	193	337	1.10E−30	[ac:g69762] [pn:two-component response regulator [yclk] homolog yclj] [gn:yclj]
							[or: bacillus subtilis ] [db:pir]
34066031_f2_7	1671	4274	552	183	328	1.00E−29	[ac:p31135] [gn:poth] [or: escherichia coli ] [de:putrescine transport system permease
							protein poth] [sp:p31135] [db:swissprot]
34069382_f3_12	1672	4275	285	94	123	9.80E−08	[ac:p21458:p21459] [gn:spoiiie] [or: bacillus subtilis ] [de:stage iii sporulation protein e]
							[sp:p21458:p21459] [db:swissprot]
34070307_f1_3	1673	4276	510	169	164	2.40E−12	[ln:ab010789] [ac:ab010789] [or: lactococcus lactis ] [sr: lactococcus lactis
							(sub_species: lactis , strain:01-7) dna] [db:genpept-bct] [de: lactococcus lactis gene for
							gad c, glutamate decarboxylase, partialand complete cds.] [nt:unnamed protein product]
							[le:2
34070313_f2_15	1674	4277	327	108	358	6.70E−33	[ac:p04455] [gn:rplx] [or: bacillus stearothermophilu s] [de:50s ribosomal protein 124]
							[sp:p04455] [db:swissprot]
3407841_f3_49	1675	4278	909	302	363	9.40E−38	[ac:p37540] [gn:yaas] [or: bacillus subtilis ] [de:hypothetical 37.6 kd protein in xpac-
							abrb intergenic region] [sp:p37540] [db:swissprot]
34078952_c1_25	1676	4279	186	61	64	0.44	[ln:af013249] [ac:af013249] [pn:leukocyte-associated ig-like receptor-1] [gn:lair-1]
							[or: homo sapiens ] [sr:human] [db:genpept-pri2] [de: homo sapiens leukocyte-associated
							ig-like receptor-1 (lair-1) mrna,complete cds.] [nt:membrane glycoprotein] [le:69] [r
34089062_c1_157	1677	4280	477	158	84	0.025	[ac:q03182] [gn:rina] [or:bacteriophage phi-11] [de:transcriptional activator rina]
							[sp:q03182] [db:swissprot]
34100717_f1_7	1678	4281	1179	392	835	1.90E−83	[ac:f69806] [pn:rna methyltransferase homolog yfjo] [gn:yfjo] [or: bacillus subtilis ]
							[db:pir]
34104550_f2_8	1679	4282	966	321	1232	1.60E−125	[ln:spgroelgn] [ac:x89236] [pn:heat shock protein] [gn:groel] [or: streptococcus
							pyogenes ] [db:genpept-bct] [de: s.pyogenes dna for groel gene.] [le:<1] [re:1446]
							[di:direct]
34109437_f3_13	1680	4283	414	137	626	2.70E−61	[ac:s49401:s49406:s38203:s38208] [pn:h+-transporting atp synthase, chain b] [gn:atpb]
							[or: streptococcus pneumoniae ] [ec:3.6.1.34] [db:pir]
34112751_f1_1	1681	4284	822	273	1401	2.00E−143	[ac:p21998] [gn:exoa] [or: streptococcus pneumoniae ] [ec:3.1.11.2]
							[de:exodeoxyribonuclease,] [sp:p21998] [db:swissprot]
34113433_f2_8	1682	4285	294	97	398	3.90E−37	[ln:sau61271] [ac:u61271] [pn:glutamine synthetase type 1] [gn:glna] [or: streptococcus
							agalactiae] [db:genpept-bct] [de: streptococcus agalactiae glutamine synthetase type 1
							(glna) gene, complete cds.] [le:40] [re:1389] [di:direct]
34117012_c2_12	1683	4286	249	83	129	1.20E−08	[ac:a69931] [pn:hypothetical protein yoze] [gn:yoze] [or: bacillus subtilis ] [db:pir]
34157512_f2_20	1684	4287	858	285	413	1.00E−38	[ac:g69712] [pn:essential for sigma-g activity at stage iii spoiiij] [gn:spoiiij] [or: bacillus
							subtilis] [db:pir]
34158132_c2_34	1685	4288	258	85	77	0.076	[ac:p41909] [gn:pxa1:pat2:pal1:ssh2:ypl147w:lp1lw:p2607] [or: saccharomyces
							cerevisiae] [sr:,baker's yeast] [de:transporter 1)] [sp:p41909] [db:swissprot]
34161715_c2_76	1686	4289	207	68	65	0.073	[ln:af031958] [ac:af031958] [pn:gen5 homolog] [gn:gen5] [or: arabidopsis thaliana ]
							[sr:thale cress] [db:genpept-pln] [de: arabidopsis thaliana gen5 homolog (gen5) mrna,
							partial cds.] [nt:similar to yeast gen5] [le:<1] [re:
34175068_c1_32	1687	4290	1158	385	886	7.50E−89	[ac:b69668] [pn:transcription termination nusa] [gn:nusa] [or: bacillus subtilis ] [db:pir]
34179066_c3_15	1688	4291	216	71	71	0.017	[ln:miatgenb] [ac:y08502] [gn:trna-ser] [or: mitochondrion arabidopsis thaliana ]
							[sr:thale cress] [db:genpept-pln] [de: a.thaliana mitochondrial genome, part b.]
							[nt:orf117] [le:58045] [re:58398] [di:complement]
34179066_f1_3	1689	4292	291	96	60	0.23	[ac:a45099] [pn:calcium channel alpha 1 subunit] [or: mus musculus ] [sr:, house mouse]
							[db:pir]
34179590_c1_22	1690	4293	579	192	157	6.40E−14	[ln:af004325] [ac:af004325] [pn:unknown] [gn:cps19bg] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae capsular serotype 19b capsule
							biosynthesislocus, cps19bf gene, partial cds, cps19bg, cps19bh, cps19bp, cps19bi,
							cps19bq, cps19
34179700_f2_12	1691	4294	951	316	280	1.20E−24	[ac:s77536] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803, ] [db:pir]
34179838_f2_6	1692	4295	828	276	731	2.00E−72	[ac:p96051] [or: streptococcus thermophilus ] [de:(orf1091)] [sp:p96051] [db:swissprot]
34180262_f2_23	1693	4296	258	85	64	0.26	[ln:bbu42599] [ac:u42599] [or: borrelia burgdorferi ] [sr:lyme disease spirochete]
							[db:genpept-bct] [de: borrelia burgdorferi plasmid cp18, ospe (ospe) gene, partial cds.]
							[nt:orfe] [le:1395] [re:1967] [di:direct]
34182762_f3_30	1694	4297	1380	459	1457	2.30E−149	[ac:p43905] [gn:aroa] [or: lactococcus lactis ] [sr:, subsplactis: streptococcus lactis ]
							[ec:2.5.1.19] [de:enolpyruvylshikimate-3-phosphate synthase) (epsp synthase)]
							[sp:p43905] [db:swissprot]
34189093_f2_11	1695	4298	351	116	124	1.60E−07	[ac:p49330] [gn:rgg] [or: streptococcus gordonii challis ] [de:rgg protein] [sp:p49330]
							[db:swissprot]
34189383_f2_21	1696	4299	276	91	301	7.40E−27	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
34189462_f3_25	1697	4300	1290	429	1096	4.20E−111	[ac:p77836] [gn:pyn] [or: bacillus stearothermophilus ] [ec:2.4.2.2] [de:pyrimidine-
							nucleoside phosphorylase,] [sp:p77836] [db:swissprot]
34191588_c1_16	1698	4301	1257	418	209	1.70E−16	[ac:p31465] [gn:yief] [or: escherichia coli ] [de:hypothetical 20.4 kd protein in tnab-bglb
							intergenic region] [sp:p31465] [db:swissprot]
34193787_f3_22	1699	4302	1053	350	1229	3.40E−125	[ac:a69688] [pn:s-adenosylmethionine trna ribosyltransferase quea] [gn:quea]
							[or: bacillus subtilis ] [db:pir]
34193880_f3_7	1700	4303	411	136	191	3.40E−15	[ac:p54519] [gn:yqhy] [or: bacillus subtilis ] [de:hypothetical 14.7 kd protein in accc-fold
							intergenic region] [sp:p54519] [db:swissprot]
34193955_c2_8	1701	4304	411	136	184	1.90E−14	[ac:q48709] [gn:nrdi] [or: lactococcus lactis ] [sr:, subspcremoris: streptococcus cremoris ]
							[de:nrdi protein] [sp:q48709] [db:swissprot]
34194062_f1_2	1702	4305	1041	346	1368	6.30E−140	[ln:lsaj1330] [ac:aj001330] [pn: ornithine transcarbamoylase ] [gn:arcb] [or: lactobacillus
							sake ] [db:genpept-bct] [ec:2.1.3.3] [de: lactobacillus sake dna encoding the arginine-
							deiminase pathwaygenes.] [le:1503] [re:2516] [di:direct]
34194127_c1_16	1703	4306	555	184	294	4.10E−26	[ac:f69815] [pn:hypothetical protein ygac] [gn:ygac] [or: bacillus subtilis ] [db:pir]
34195452_f1_1	1704	4307	717	238	1205	1.20E−122	[ac:s49405:s38207] [pn:h+-transporting atp synthase, chain a] [gn:atpa]
							[or: streptococcus pneumoniae ] [ec:3.6.1.34] [db:pir]
34195936_c1_10	1705	4308	672	223	152	1.70E−09	[ln:bsy09476] [ac:y09476] [pn:yitl] [or: bacillus subtilis ] [db:genpept-bct] [de: b.subtilis
							54kb genomic dna fragment.] [nt:putative] [le:38747] [re:39595] [di:direct]
34198517_c1_17	1706	4309	2493	830	162	5.80E−10	[ln:u93872] [ac:u93872] [or: kaposi's sarcoma -associated herpesvirus] [sr: kaposi's
							sarcoma -associated herpesvirus - human herpesvirus 8] [db:genpept-vrl] [de: kaposi's
							sarcoma -associated herpesvirus glycoprotein m, dnareplication protein, glycoprotein,
							dna
34250137_f3_10	1707	4310	744	247	208	3.60E−16	[ac:q10449] [gn:spac12b10.16c] [or: schizosaccharomyces pombe ] [sr:, fission yeast]
							[de:hypothetical 57.2 kd protein c12b10.16c in chromosome i] [sp:q10449]
							[db:swissprot]
34253377_f3_5	1708	4311	855	284	518	7.50E−50	[ln:af019986] [ac:af019986] [pn:pksb] [gn:pksb] [or: dictyostelium discoideum ]
							[db:genpept-inv] [de: dictyostelium discoideum pksb (pksb) mrna, complete cds.]
							[nt:similar to e. coli 3-oxoacyl-[acyl-carrier protein]] [le:1] [re:783] [di:direct]
34254635_c1_13	1709	4312	1230	409	894	1.10E−89	[ac:b69640] [pn:coproporphyrinogen iii oxidase hemn] [gn:hemn] [or: bacillus subtilis ]
							[db:pir]
34255432_c3_35	1710	4313	507	168	309	1.10E−27	[ac:g69180] [pn:ribose 5-phosphate isomerase] [gn:mth6O8] [or: methanobacterium
							thermoautotrophicum ] [db:pir]
34257693_c2_53	1711	4314	645	214	147	9.50E−09	[ac:i38170] [pn:gene hr44 protein] [gn:hr44] [or: homo sapiens ] [sr:, man] [db:pir]
34257778_c1_10	1712	4315	204	67	49	0.25	[ac:p29348] [gn:gnat3:gnat-3] [or: rattus norvegicus ] [sr:,rat] [de:alpha-3 chain)]
							[sp:p29348] [db:swissprot]
34258262_f2_7	1713	4316	318	105	259	2.10E−22	[ac:p04454] [gn:rplw] [or: bacillus stearothermophilus ] [de:50s ribosomal protein 123]
							[sp:p04454] [db:swissprot]
34258467_c2_42	1714	4317	837	278	923	9.10E−93	[ac:p18843:p78235] [gn:nade:efg:ntrt] [or: escherichia coli ] [ec:6.3.5.1] [de:protein)]
							[sp:p18843:p78235] [db:swissprot]
34261562_c2_30	1715	4318	672	223	194	1.60E−15	[ac:p39066] [gn:acub] [or: bacillus subtilis ] [de:acetoin utilization acub protein]
							[sp:p39066] [db:swissprot]
34261688_c2_10	1716	4319	573	190	144	4.50E−09	[ac:p39214] [gn:mcpa] [or: bacillus subtilis ] [de:methyl-accepting chemotaxis protein
							mcpa (h1)] [sp:p39214] [db:swissprot]
34266287_c2_11	1717	4320	1134	377	371	6.30E−34	[ac:d69796] [pn:two-component sensor histidine kinase [yes homolog yesm] [gn:yesm]
							[or: bacillus subtilis ] [db:pir]
34266336_f2_6	1718	4321	2253	750	405	4.90E−35	[ln:af019904] [ac:af019904] [pn:choline binding protein a] [gn:cbpa] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae choline binding protein a
							(cbpa) gene, partial cds.] [nt:cbpa] [le:<1] [re:1992] [di:direct]
34272266_c1_29	1719	4322	648	215	167	1.20E−12	[ln:d78257] [ac:d78257) [pn:orf8] [gn:orf8] [or: enterococcus faecalis ] [sr: enterococcus
							faecalis plasmid:pyi17 dna] [db:genpept-bct] [de: enterococcus faecalis plasmid pyi17
							genes for baca, bacb, orf3, orf4, orf5, orf6, orf7, orf8, orf9, orf10, orf11, partia
34274090_c3_15	1720	4323	573	190	938	2.30E−94	[ac:p51595) [gn:sulc] [or: streptococcus pneumoniae ] [ec:3.5.4.16] [de:gtp
							cyclohydrolase i, (gtp-ch-i)] [sp:p51595] [db:swissprot]
34274138_f1_4	1721	4324	888	295	804	3.70E−80	[ac:c69795] [pn:pet112-like protein homolog yern] [gn:yern] [or: bacillus subtilis ]
							[db:pir]
34274177_f3_12	1722	4325	885	294	896	6.60E−90	[ac:g69879] [pn:1-serine dehydratase homolog ylpa] [gn:ylpa] [or: bacillus subtilis ]
							[db:pir]
34375681_f1_8	1723	4326	308	103	170	1.20E−12	[ln:fibril] [ac:af007112] [pn:fibrillarin] [gn:fib] [or: plasmodium falciparum ] [sr:malaria
							parasite] [db:genpept-inv] [de: plasmodium falciparum fibrillarin (fib) gene, partial cds.]
							[nt:nucleolar protein] [le:<1] [re:906] [di:direct]
34376661_f3_12	1724	4327	1785	594	1214	1.30E−123	[ac:jc5618] [pn:beta-galactosidase,:lactase] [gn:bgac] [or: bacillus circulans ]
							[ec:3.2.1.23] [db:pir]
34378317_f1_13	1725	4328	384	127	82	0.067	[ac:s52535] [pn:mry15 protein] [or: streptococcus pyogenes ] [db:pir]
34381875_f1_7	1726	4329	279	92	74	0.069	[ac:p14247] [gn:rpoa2] [or: methanococcus vannielii ] [ec:2.7.7.6] [de:dna-directed rna
							polymerase subunit a″,] [sp:p14247] [db:swissprot]
34381875_f3_17	1727	4330	2187	728	3571	0	[ac:q03727] [gn:coma] [or: streptococcus pneumoniae ] [de:transport atp-binding protein
							coma] [sp:q03727] [db:swissprot]
34407327_f3_12	1728	4331	876	291	196	4.30E−13	[ac:jc4176] [pn:pyruvate, water dikinase,:phosphoenolpyruvate synthetase] [gn:ppsa]
							[or: pyrococcus furiosus ] [ec:2.7.9.2] [db:pir]
34413410_f1_2	1729	4332	354	117	204	1.40E−16	[ac:s74925] [pn:transposase:protein s110650:protein s110650] [or:synechocystis sp.]
							[sr:pcc 6803, , pcc 6803] [sr:pcc 6803, ] [db:pir]
34415678_c1_31	1730	4333	765	254	422	1.10E−39	[ac:f64149] [pn:hypothetical protein hi0355] [cl:hypothetical protein b0934]
							[or: haemophilus influenzae ] [db:pir]
34415937_c2_41	1731	4334	2880	959	1217	9.20E−126	[ln:bcx98455] [ac:x98455] [gn:snf] [or: bacillus cereus ] [db:genpept-bct] [de: b. cereus
							orf1 and snf2 gene.] [le:1471] [re:4665] [di:direct]
34416500_f1_3	1732	4335	774	257	1238	3.80E−126	[ac:p35593] [gn:msra:exp3] [or: streptococcus pneumoniae ] [de:(exported protein 3)]
							[sp:p35593] [db:swissprot]
34417087_c3_12	1733	4336	225	74	54	0.31	[ln:celf26g5] [ac:af022974] [gn:f26g5.9] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid f26g5.]
							[nt:contains similarity to c3hc4-type zinc fingers;] [le:13407:13548:14519] [re:1
34417187_c3_32	1734	4337	924	307	679	6.50E−67	[ac:g69818] [pn:cmp-binding factor homolog yham] [gn:yham] [or: bacillus subtilis ]
							[db:pir]
34417212_c3_93	1735	4338	729	242	660	6.70E−65	[ac:p35159] [gn:ypul] [or: bacillus subtilis ] [de:hypothetical 26.0 kd protein in spmb-
							aroc intergenic region (orfx13)) [sp:p35159] [db:swissprot]
34431507_f1_13	1736	4339	1266	421	980	8.30E−99	[ln:stproba] [ac:x92418] [pn:gamma-glutamyl phosphate reductase] [gn:proa]
							[or: streptococcus thermophilus ] [db:genpept-bct] [de: s.thermophilus prob and proa
							genes.] [le:946] [re:2196] [di:direct]
34453175_f1_3	1737	4340	900	299	634	3.80E−62	[ac:p46338] [gn:yqgg] [or: bacillus subtilis ] [de:region precursor (orf108)] [sp:p46338]
							[db:swissprot]
34453403_c3_28	1738	4341	1413	470	753	9.40E−75	[ac:b70007] [pn:na+-transporting atp synthase homolog yubg] [gn:yubg] [or: bacillus
							subtilis ] [db:pir]
34468793_c1_11	1739	4342	201	66	94	6.40E−05	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
34468927_f1_4	1740	4343	288	95	68	0.73	[ac:jc1440] [pn:hypothetical 55k protein] [or: aedes aegypti ] [sr:, yellow fever mosquito]
							[db:pir]
34547066_c1_34	1741	4344	669	222	888	4.60E−89	[ln:af019904] [ac:af019904] [pn:choline binding protein a] [gn:cbpa] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae choline binding protein a
							(cbpa) gene, partial cds.] [nt:cbpa] [le:<1] [re:1992] [di:direct]
34553342_f3_12	1742	4345	207	68	61	0.18	[ln:lmu58160] [ac:u58160] [gn:mhc class i] [or: lepidodactylus moestus ] [db:genpept-
							vrt] [de: lepidodactylus moestus mhc class i mrna, peptide binding regionalpha-2
							domain, partial cds.] [nt:encodes peptide binding region alpha-2 domain] [le:<1] [re:
34555451_f3_16	1743	4346	789	262	379	4.00E−35	[ac:p06755] [gn:nodj] [or: rhizobium leguminosarum ] [sr:, biovar viciae ] [de:nodulation
							protein j] [sp:p06755] [db:swissprot]
34564062_f3_37	1744	4347	3675	1224	1783	2.00E−232	[ln:llu76424] [ac:u76424] [pn:exonuclease rexa] [gn:rexa] [or: lactococcus lactis ]
							[db:genpept] [de: lactococcus lactis dnaa (dnaa) gene, partial cds; polymerase iii subunit
							dnan (dnan), exonuclease rexb (rexb), and exonuclease rexa(rexa) genes, complete cds
34564067_f3_15	1745	4348	1815	604	617	2.40E−60	[ac:g69843] [pn:oligoendopeptidase homolog yjbg] [gn:yjbg] [or: bacillus subtilis ]
							[db:pir]
34564187_c2_194	1746	4349	390	129	82	0.24	[ln:htcalnex] [ac:z35108] [pn:calnexin] [fn:er-bound chaperone] [or: helianthus
							tuberosus ] [db:genpept-pln] [de: h.tuberosus mrna for calnexin.] [le:69] [re:1691]
34569186_f1_2	1747	4350	693	230	188	7.00E−15	[ac:p25362] [gn:pet18:hit2:ycr20c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:pet18 protein] [sp:p25362] [db:swissprot]
34569193_c1_8	1748	4351	1320	439	617	2.40E−60	[ac:c69785] [pn:cellobiose phosphotransferase system enzym homolog ydho] [gn:ydho]
							[or: bacillus subtilis ] [db:pir]
34570890_f1_4	1749	4352	1356	451	2307	2.00E−239	[ln:spu43526] [ac:u43526] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae neuraminidase b (nanb) gene, complete cds, and
							neuraminidase (nana) gene, partial cds.] [nt:orf-2] [le:1951] [re:3288] [di:direct]
34571056_f3_23	1750	4353	810	269	713	1.60E−70	[ac:g69728] [pn:uridine kinase udk] [gn:udk] [or: bacillus subtilis ] [db:pir]
34571877_c2_43	1751	4354	240	79	233	1.20E−19	[ac:q48708] [gn:nrdh] [or: lactococcus lactis ] [sr:,subspcremoris: streptococcus cremoris ]
							[de:glutaredoxin-like protein nrdh] [sp:q48708] [db:swissprot]
34572192_c3_38	1752	4355	198	65	67	0.045	[ac:g69771] [pn:hypothetical protein ydbl] [gn:ydbl] [or: bacillus subtilis ] [db:pir]
34572207_c3_19	1753	4356	201	66	58	0.34	[ln:sc354chiv] [ac:x95966] [gn:orf:pza105] [or: saccharomyces cerevisiae ] [sr:baker's
							yeast] [db:genpept-pln] [de: s.cerevisiae 35.4kb dna region on left arm of chromosome
							iv.] [le:33874] [re:34191] [di:dircct]
34574063_c3_56	1754	4357	1320	439	1730	2.80E−178	[ac:s65968:a42280] [pn:adenylosuccinate synthase,:imp--aspartate ligase] [gn:pura]
							[cl:adenylosuccinate synthase] [or: bacillus subtilis ] [ec:6.3.4.4] [db:pir]
34578928_c2_83	1755	4358	933	310	1056	7.30E−107	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir]
34578928_f2_13	1756	4359	933	310	1055	9.30E−107	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir]
34578928_f2_14	1757	4360	933	310	1037	7.50E−105	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir]
34579635_f3_14	1758	4361	516	171	294	4.10E−26	[ac:a64533] [pn:conserved hypothetical protein hp0105] [or: helicobacter pylori ] [db:pir]
34582167_c1_12	1759	4362	324	107	71	0.7	[ac:p50237] [gn:st1cl] [or: rattus norvegicus ] [sr:,rat] [ec:2.8.2.—] [de:n-
							hydroxyarylamine sulfotransferase, (hast-i)] [sp:p50237] [db:swissprot]
34585312_f3_38	1760	4363	225	74	75	0.086	[ac:s27564] [pn:polysaccharide translocation-related protein] [or: escherichia coli ]
							[db:pir]
34586062_c2_47	1761	4364	318	105	259	2.10E−22	[ac:p55768] [or: enterococcus faecium ] [sr:, streptococcus faecium ] [de:probable
							ribosomal protein in infb 5′region] [sp:p55768] [db:swissprot]
34589068_f1_2	1762	4365	789	262	496	1.60E−47	[ln:ae001165] [ac:ae001165:ac000783] [pn:spermidine/putrescine abc transporter,
							permease] [gn:bb0640] [or: borrelia burgdorferi ] [sr:lyme disease spirochete]
							[db:genpept-bct] [de: borrelia burgdorferi (section 51 of 70) of the complete genome.]
34589187_f3_18	1763	4366	1362	453	2172	4.00E−225	[ac:p36498] [gn:comb] [or: streptococcus pneumoniae ] [de:transport protein comb]
							[sp:p36498] [db:swissprot]
34611037_f1_43	1764	4367	708	235	63	0.42	[ln:pfagbp] [ac:m15212] [or: plasmodium falciparum ] [sr: p.falciparum (fc27) schizont,
							cdna to mrna, clone ag 78] [db:genpept-inv] [de: p.falciparum glycophorin-binding
							protein mrna, partial.] [nt:glycophorin binding protein] [le:<1] [re:
34617811_f1_3	1765	4368	864	287	231	1.90E−19	[ac:d69841] [pn:hypothetical protein yits] [gn:yits] [or: bacillus subtilis ] [db:pir]
34617937_f3_17	1766	4369	1821	606	2159	9.60E−224	[ln:sau49821] [ac:u49821] [pn:group b oligopeptidase pepb] [gn:pepb]
							[or: streptococcus agalactiae ] [db:genpept-bct] [de: streptococcus agalactiae group b
							oligopeptidase pepb (pepb) gene, complete cds.] [le:205] [re:2010] [di:direct]
34626902_f3_44	1767	4370	1761	586	880	3.30E−88	[ac:p55452] [gn:y4fn] [or:rhizobium sp] [sr:ngr234,] [de:probable abc transporter
							permease protein y4fn] [sp:p55452] [db:swissprot]
34632825_c2_51	1768	4371	1236	411	799	1.30E−79	[ac:b69888] [pn:gtp-binding protein proteinase modulator homolog ynba] [gn:ynba]
							[or: bacillus subtilis ] [db:pir]
34640667_f3_23	1769	4372	1347	448	257	3.50E−31	[ac:a33427:a00901:a61016:i54348:i37394:i84457] [pn:alpha-1-fucosidase, 1 precursor,
							tissue:alpha-1-fucosidase i:alpha-1-fucoside fucohydrolase] [gn:fuca1] [cl:alpha-1-
							fucosidase] [or: homo sapiens ] [sr:, man] [ec:3.2.1.51] [db:pir] [mp:lp35-lp34]
34642135_c3_73	1770	4373	654	217	1073	1.20E−108	[ln:spparcetp] [ac:z67739] [gn:orf2] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae parc, pare and transposase genes and unknown orf.] [nt:unidentified]
							[le:478] [re:1119] [di:complement]
34642207_f2_18	1771	4374	1962	653	3299	0	[ln:spparcetp] [ac:z67739] [pn:dna topoisomerase iv] [gn:pare] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: s.pneumoniae parc, pare and transposase genes and
							unknown orf.] [nt:pare subunit] [le:1255] [re:3198] [di:direct]
34642556_f1_17	1772	4375	990	329	1452	7.90E−149	[ln:spdnagcpo] [ac:y11463] [gn:rpod] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae dnag, rpod, cpoa genes and orf3 and orf5.] [le:566]
							[re:1675] [di:direct]
34642762_c3_67	1773	4376	1383	460	1378	5.50E−141	[ln:efu94707] [ac:u94707] [pn:d-glutamic acid adding enzyme] [gn:murd]
							[or: enterococcus faecalis ] [db:genpept-bct] [de: enterococcus faecalis strain a24836 cell
							wall/cell division genecluster, yllb, yllc, ylld, pbpc, mray, murd, murg, div1b, ftsa
							and ftsz g
34643752_f2_10	1774	4377	255	84	157	1.30E−11	[ac:p51280] [gn:acpp] [or: porphyra purpurea ] [de:acyl carrier protein] [sp:p51280]
							[db:swissprot]
34647127_f2_6	1775	4378	864	287	1275	4.50E−130	[ac:p33170] [gn:tuf] [or: streptococcus oralis ] [de:elongation factor tu (ef-tu)]
							[sp:p33170] [db:swissprot]
34648442_c1_17	1776	4379	486	161	386	7.30E−36	[ac:p32393] [gn:comeb:come2] [or: bacillus subtilis ] [de:come operon protein 2]
							[sp:p32393] [db:swissprot]
34652142_f3_11	1777	4380	495	164	98	9.20E−05	[ac:a69404] [pn:mutator protein mutt (mutt) homolog] [or: archaeoglobus fulgidus ]
							[db:pir]
34662525_c2_11	1778	4381	183	60	58	0.34	[ac:p54027] [gn:mj0249] [or: methanococcus jannaschii ] [de:50s ribosomal protein 144e]
							[sp:p54027] [db:swissprot]
34663438_f3_29	1779	4382	543	180	156	1.70E−11	[ln:u97022] [ac:u97022] [or: fervidobacterium islandicum ] [db:genpept-bct]
							[de: fervidobacterium islandicum dna topoisomerase i (topa) gene, complete cds.] [nt:orf;
							similar to serine/threonine protein] [le:3164] [re:3814] [di:direct]
34667942_f3_46	1780	4383	444	147	60	0.4	[ln:asporfgen] [ac:x95645] [pn:molybdo-pterin binding protein] [gn:mop] [or:anabaena
							sp.] [sr:anabaena sp] [db:genpept-bct] [de:anabaena sp. mop gene and 5 orfs.] [le:252]
							[re:461] [di:complement]
35156957_f1_3	1781	4384	471	156	522	2.80E−50	[ac:p96050] [gn:fold] [or: streptococcus thermophilus ] [ec:1.5.1.5:3.5.4.9]
							[de:methenyltetrahydrofolate cyclohydrolase,] [sp:p96050] [db:swissprot]
35157188_c2_77	1782	4385	546	181	238	3.50E−20	[ac:p94559] [gn:ysnb] [or: bacillus subtilis ] [de:hypothetical 19.2 kd protein in rph-ilvb
							intergenic region] [sp:p94559] [db:swissprot]
35158580_f3_31	1783	4386	903	300	745	6.60E−74	[ac:p43909] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ] [ec:4.2.1.51]
							[de:prephenate dehydratase, (pdt)] [sp:p43909] [db:swissprot]
35162937_f2_27	1784	4387	756	251	73	0.98	[ln:bmfib5e] [ac:x03973:m24222] [pn:fibroin] [or: bombyx mandarina ] [db:genpept-inv]
							[de: bombyx mandarina fibroin gene 5′-end region (exons 1 and 2 partial).] [le:952:1963]
							[re:993:
35164067_c1_23	1785	4388	192	63	67	0.045	[ac:p19281] [or: thermoproteus tenax virus 1] [sr:kra1,ttv1] [de:hypothetical 8.9 kd
							protein] [sp:p19281] [db:swissprot]
35172212_c3_9	1786	4389	192	63	99	1.90E−05	[ln:cet04f8] [ac:z66565] [pn:t04f8.8] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid t04f8, complete sequence.] [nt:cdna est yk121f1.5
							comes from this gene] [le:34969] [re:35259] [di:direct]
35175337_f1_6	1787	4390	192	63	91	0.00013	[ln:cet04f8] [ac:z66565] [pn:t04f8.8] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid t04f8, complete sequence.] [nt:cdna est yk121f1.5
							comes from this gene] [le:34969] [re:35259] [di:direct]
35176568_f2_28	1788	4391	1914	637	542	2.10E−52	[ln:spz82001] [ac:z82001] [pn:pcpa] [gn:pcpa] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: s.pneumoniae pcpa gene and open reading frames.] [nt:the n-
							terminal domain of pcpa is similar to] [le:2064] [re:4190] [di:direct]
35197136_c1_43	1789	4392	243	80	142	5.20E−10	[ac:q57574] [gn:mj0110] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj0110] [sp:q57574] [db:swissprot]
35205050_c2_3	1790	4393	243	80	70	0.022	[ac:p43608] [gn:yfr035c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 12.5 kd protein in pho4-cdc26 intergenic region] [sp:p43608]
							[db:swissprot]
35207937_c1_39	1791	4394	711	236	538	5.70E−52	[ac:b69693] [pn:ribonuclease iii rncs] [gn:rncs] [or: bacillus subtilis ] [db:pir]
35212588_f1_1	1792	4395	1107	368	84	0.22	[ac:s63658] [pn:nadh dehydrogenase (ubiquinone), chain 2] [or: mitochondrion
							allomyces macrogynus ] [ec:1.6.5.3] [db:pir]
35212876_f3_53	1793	4396	699	232	98	0.019	[ln:af001780] [ac:af001780] [pn:nifs] [gn:nifs] [fn:nitrogen fixation] [or:cyanothece pcc
							8801] [db:genpept-bct] [de:cyanothece pcc 8801 nitrogenase (nitb), fdxn (fdxn), nifs
							(nifs) and nifu (nifu) genes, complete cds, and nifh (nifh) gene, partial cds.] [l
35234636_f3_17	1794	4397	480	159	163	3.10E−12	[ac:g70079] [pn:hypothetical protein yxji] [gn:yxji] [or: bacillus subtilis ] [db:pir]
35235787_f3_27	1795	4398	537	178	589	2.20E−57	[ac:p44779] [gn:fuci:hi0614] [or: haemophilus influenzae ] [ec:5.3.1.—] [de:1-fucose
							isomerase,] [sp:p44779] [db:swissprot]
35241383_f3_7	1796	4399	3873	1290	6561	0	[ac:p49610] [gn:strh] [or: streptococcus pneumoniae ] [ec:3.2.1.52] [de:beta-n-
							acetylhexosaminidase precursor,] [sp:p49610] db:swissprot]
35245288_f1_10	1797	4400	357	118	136	2.30E−09	[ac:g69983] [pn:hypothetical protein ysda] [gn:ysda] [or: bacillus subtilis ] [db:pir]
35292813_c3_62	1798	4401	2226	741	1302	2.80E−135	[ac:g69708] [pn:chromosome segregation smc protein homolg smc] [gn:smc]
							[or: bacillus subtilis ] [db:pir]
35332075_f1_4	1799	4402	237	78	98	0.00037	[ac:p23920] [gn:mets] [or: bacillus stearothermophilus ] [ec:6.1.1.10] [de:(metrs)]
							[sp:p23920] [db:swissprot]
35338911_c1_30	1800	4403	216	71	52	0.099	[ac:p09004] [or: zea mays ] [sr:,maize] [de:mitochondrial 24 kd protein (orf25)]
							[sp:p09004] [db:swissprot]
35343827_f1_10	1801	4404	1152	383	179	8.80E−15	[ln:mtv018] [ac:a1021899] [pn:putative regulator] [gn:mtv018.04] [or: mycobacterium
							tuberculosis ] [db:genpept] [de: mycobacterium tuberculosis sequence v018.]
							[nt:mtv018.04, len:346. unknown but shows similarity] [le:2429] [re:3469] [di:direct]
35344525_f3_6	1802	4405	318	105	154	2.80E−11	[ac:a69868] [pn:conserved hypothetical protein ykvj] [gn:ykvj] [or: bacillus subtilis ]
							[db:pir]
35351687_c2_23	1803	4406	402	134	90	0.0063	[ac:e69896] [pn:hypothetical protein yoak] [gn:yoak] [or: bacillus subtilis ] [db:pir]
35353567_f2_23	1804	4407	984	327	112	0.0035	[ac:a64465] [pn:hypothetical protein mj1322] [or: methanococcus jannaschii ] [db:pir]
							[mp:rev1273394-1270377]
35355433_f3_15	1805	4408	519	172	397	5.00E−37	[ac:p54556] [gn:yqjs] [or: bacillus subtilis ] [de:hypothetical 33.6 kd protein in glnq-ansr
							intergenic region] [sp:p54556] [db:swissprot]
35361455_f2_3	1806	4409	756	251	454	4.50E−43	[ac:p08186] [gn:manx:ptsl:gptb] [or: escherichia coli ] [ec:2.7.1.69] [de:(ec 2.7.1.69) (eiii-
							man)] [sp:p08186] [db:swissprot]
							[le:<1] [re:
35367205_c3_106	1807	4410	207	68	59	0.28	[ln:abgltba] [ac:x71632] [pn:glutamate synthase (nadph)] [gn:gltb] [or: azospirillum
							brasilense ] [db:genpept-bct] [ec:1.4.1.13] [de: a.brasilense gene for glutamate synthase.]
35367205_f1_2	1808	4411	207	68	59	0.28	[ln:abgltba] [ac:x71632] [pn:glutamate synthase (nadph)] [gn:gltb] [or: azospirillum
							brasilense ][db:genpept-bct] [ec:1.4.1.13] [de: a.brasilense gene for glutamate synthase.]
							[le:<1] [re:
35392217_f1_5	1809	4412	294	97	68	0.036	[ac:p17286] [gn:vpu] [or:chimpanzee immunodeficiency virus (siv)] [sr:,siv:cpz:civ]
							[de:vpu protein (u orf protein)] [sp:p17286] [db:swissprot]
35397592_c2_14	1810	4413	330	109	328	1.00E−29	[ac:d69785] [pn:beta-glucosidase homolog ydhp] [gn:ydhp] [or: bacillus subtilis ]
							[db:pir]
35407033_c3_82	1811	4414	297	98	73	0.027	[ac:p33054] [gn:rpo22:j4r:14r] [or:variola virus] [ec:2.7.7.6] [de:dna-directed rna
							polymerase 22 kd polypeptide,] [sp:p33054] [db:swissprot]
35422967_c1_70	1812	4415	783	260	486	1.80E−46	[ac:p54458] [gn:yqem] [or: bacillus subtilis ] [de:hypothetical 28.3 kd protein in arod-
							comer intergenic region] [sp:p54458] [db:swissprot]
35429683_f1_9	1813	4416	345	114	332	3.80E−30	[ac:p55339] [gn:ecsa:prst] [or: bacillus subtilis ] [de:abc-type transporter atp-binding
							protein ecsa] [sp:p55339] [db:swissprot]
35444503_f3_3	1814	4417	489	162	181	1.20E−13	[ac:a69875] [pn:hypothetical protein ylbl] [gn:ylbl] [or: bacillus subtilis ] [db:pir]
35580393_f2_8	1815	4418	300	99	111	4.40E−06	[ln:ecnpl] [ac:x03345] [or: escherichia coli ] [db:genpept-bct] [de: e. coli npl gene for n-
							acetylneuraminate lyase subunit (ec4.1.3.3).] [nt:n-acetylneuraminate lyase (ec 4.1.3.3)
							(aa 1-297)] [sp:p06995] [le:93] [re:986] di:direct]
35585952_c3_13	1816	4419	582	193	720	2.90E−71	[ac:p45294] [gn:hi1648] [or: haemophilus influenzae ] [de:hypothetical protein hi1648]
							[sp:p45294] [db:swissprot]
35600818_c3_64	1817	4420	855	284	462	6.40E−44	[ac:p09997:p76737] [gn:yida] [or: escherichia coli ] [de:hypothetical 29.7 kd protein in
							ibpa-gyrb intergenic region] [sp:p09997:p76737] [db:swissprot]
35703750_c2_64	1818	4421	186	61	63	0.12	[ac:f69858] [pn:hypothetical protein ykoa] [gn:ykoa] [or: bacillus subtilis ] [db:pir]
35710942_c2_27	1819	4422	390	130	149	2.70E−10	[ac:p49330] [gn:rgg] [or: streptococcus gordonii challis ] [de:rgg protein] [sp:p49330]
							[db:swissprot]
35742318_f2_4	1820	4423	936	311	728	4.20E−72	[ac:a69627] [pn:fructose 1-phosphate kinase frub] [gn:frub] [or: bacilius subtilis ]
35742875_c3_43	1821	4424	831	276	147	2.20E−08	[ac:s75891] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803,] [db:pir]
35751527_c2_97	1822	4425	615	204	60	0.61	[ln:ccu12924] [ac:u12924] [pn:nadh dehydrogenase subunit 5] [gn:nd5]
							[or: mitochondrion ceratitis capitata ] [sr:mediterranean fruit fly] [db:genpept-inv]
							[de: ceratitis capitata mitochondrion nadh dehydrogenase subunit 5(nd5) and nadh
							dehydrogenase subunit
35757805_f1_10	1823	4426	1281	426	678	8.30E−67	[ac:c69881] [pn:conserved hypothetical protein yluc] [gn:yluc] [or: bacillus subtilis ]
							[db:pir]
35785630_f3_42	1824	4427	333	110	267	3.00E−23	[ac:p49938] [gn:fhuc] [or: bacillus subtilis ] [de:ferrichrome transport atp-binding protein
							fhuc] [sp:p49938] [db:swissprot]
35792668_c2_110	1825	4428	192	63	154	2.80E−11	[ln:celc34d4] [ac:u58755] [gn:c34d4.11] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c34d4.]
							[le:13972:14090:14398] [re:14036:14143:14493] [di:complementjoin]
35820437_c2_61	1826	4429	216	71	69	0.19	[ln:ab006531] [ac:ab006531] [pn:nonstructural polyprotein] [or: plautia stali intestine
							virus] [sr: plautia stali intestine virus (specific_host: plautia stali ) rna] [db:genpept-vrl]
							[de: plautia stali intestine virus rna for nonstructuralpolyprotein, capsid
35833438_c3_7	1827	4430	579	192	206	8.60E−17	[ac:p11288] [gn:yaaa] [or: escherichia coli ] [de:hypothetical 29.6 kd protein in thrc-talb
							intergenic region] [sp:p11288] [db:swissprot]
35833603_c1_89	1828	4431	393	130	181	3.80E−14	[ac:s34666] [pn:glycine-rich protein] [cl:phaseolus glycine-rich protein 1.0]
							[or: nicotiana tabacum ] [sr:, common tobacco] [db:pir]
35937837_f3_54	1829	4432	1221	406	332	5.50E−30	[ac:s39886] [pn:virr protein] [or: streptococcus pyogenes ] [db:pir]
35972157_f2_3	1830	4433	645	214	381	2.50E−35	[ac:s77250] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803, ] [db:pir]
35994090_f1_11	1831	4434	363	120	373	1.70E−34	[ac:q02144] [gn:leud] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:4.2.1.33] [de:(isopropylmalate isomerase) (alpha-ipm isomerase)] [sp:q02144]
							[db:swissprot]
36023300_f3_38	1832	4435	423	140	174	3.40E−12	[ac:p32399] [gn:yhge] [or: bacillus subtilis ] [de:hypothetical 84.1 kd protein in hemy-
							gltt intergenic region (orfb)] [sp:p32399] [db:swissprot]
36023437_f1_4	1833	4436	876	291	428	2.60E−40	[ac:p28244:p77647] [gn:ydib] [or: escherichia coli ] [de:hypothetical 31.2 kd protein in
							lpp-arod intergenic region] [sp:p28244:p77647] [db:swissprot]
36023466_c1_147	1834	4437	330	109	63	0.71	[ac:p52858] [gn:rpsn] [or:synechococcus sp] [sr:pcc 6301,] [de:30s ribosomal protein
							s14] [sp:p52858] [db:swissprot]
36024178_f3_14	1835	4438	849	283	735	7.60E−73	[ln:smu69164] [ac:u69164] [pn:d-alanine:d-alanine ligase] [or: streptococcus mitis ]
							[db:genpept-bct] [de: streptococcus mitis nctc 12261 d-alanine:d-alanine ligase
							gene,partial cds.] [le:<1] [re:
36025417_c3_222	1836	4439	519	172	73	0.0055	[ln:btp9011] [ac:x84706] [gn:a1] [or:bacteriophage b1] [db:genpept-phg]
							[de:bacteriophage tp901-1 genomic region.] [le:2002] [re:2340] [di:direct]
36042213_c3_12	1837	4440	651	216	687	9.20E−68	[ac:p45246] [gn:hi1545] [or: haemophilus influenzae ] [de:hypothetical symporter
							hi1545] [sp:p45246] [db:swissprot]
36053457_f2_3	1838	4441	735	244	485	2.30E−46	[ac:b69627] [pn:transcriptional repressor of the fructose operon frur] [gn:frur]
							[or: bacillus subtilis ] [db:pir]
36054687_f1_6	1839	4442	288	95	178	8.00E−14	[ln:soorfs] [ac:z79691] [pn:orfb] [gn:yorfb] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae yorf[a,b,c,d,e], ftsl, pbpx and regr genes.] [le:1914] [re:2372]
							[di:complement]
36063307_f1_4	1840	4443	213	70	66	0.22	[ac:q04663] [gn:cpsc] [or: streptococcus agalactiae ] [de:cpsc protein] [sp:q04663]
							[db:swissprot]
36071931_f3_35	1841	4444	273	90	66	0.4	[ac:p75585] [or: mycoplasma pneumoniae ] [de:hypothetical protein mg147 homolog]
							[sp:p75585] [db:swissprot]
36073775_f1_4	1842	4445	945	314	670	5.80E−66	[ac:p25744] [gn:ycec] [or: escherichia coli ] [de:hypothetical 43.9 kd protein in msyb-
							htrb intergenic region (orf1)] [sp:p25744] [db:swissprot]
36O73805_c1_63	1843	4446	282	93	72	0.13	[ln:atap22] [ac:z99708] [pn:purple acid phosphatase] [or: arabidopsis thaliana ] [sr:thale
							cress] [db:genpept-pln] [de: arabidopsis thaliana dna chromosome 4, essa i ap2 contig
							fragmentno. 2.] [nt:strong similarity to 1kbpa - purple acid] [le:193868:194196:1
36078593_f3_8	1844	4447	432	143	227	5.10E−19	[ac:c70008] [pn:pyrazinamidase/nicotinamidase homolog yuej] [gn:yuej] [or: bacillus
							subtilis ] [db:pir]
36110881_f1_2	1845	4448	1026	341	1042	2.20E−105	[ac:jc5310] [pn:galactose repressor] [gn:galr] [or: streptococcus mutans ] [db:pir]
36118812_c2_14	1846	4449	897	298	1492	4.60E−153	[ac:p09357] [gn:dpnb] [or: streptococcus pneumoniae ] [ec:3.1.21.4] [de:(r.dpnii)]
							[sp:p09357] [db:swissprot]
36125437_c3_53	1847	4450	942	313	867	7.80E−87	[ac:q60252] [gn:pyrb] [or: lactobacillus leichmannii ] [ec:2.1.3.2] [de:transcarbamylase)
							(atcase)] [sp:q60252] [db:swissprot]
36125802_c1_16	1848	4451	204	67	240	2.20E−20	[ln:llu89998] [ac:u89998] [pn:50s ribosomal protein subunit 132] [gn:rpmf]
							[or: lactococcus lactis cremoris ] [db:genpept-bct] [de: lactococcus lactis cremoris 50s
							ribosomal protein subunit 132(rpmf), 50s ribosomal protein subunit 133 (rpmg),5-methyl-
							cytosin
36126252_c2_39	1849	4452	1281	426	1361	3.50E−139	[ac:q00749] [gn:msme] [or: streptococcus mutans ] [de:multiple sugar-binding protein
							precursor] [sp:q00749] [db:swissprot]
36126876_c2_35	1850	4453	666	221	194	1.60E−15	[ac:s56619:b65255] [pn:gpmb protein:hypothetical protein o215b] [gn:gpmb]
							[or: escherichia coli ] [db:pir]
36128160_c3_55	1851	4454	258	85	64	0.015	[ac:s75748] [pn:hypothetical protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803, ] [db:pir]
36132663_c1_11	1852	4455	747	248	911	1.70E−91	[ac:q07637] [gn:pyk] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.7.1.40] [de:pyruvate kinase,] [sp:q07637] [db:swissprot]
36133437_f3_7	1853	4456	1362	453	1314	3.30E−134	[ac:p39772] [gn:asns] [or: bacillus subtilis ] [ec:6.1.1.22] [de:(asnrs)] [sp:p39772]
							[db:swissprot]
36135787_f1_39	1854	4457	261	86	67	0.44	[ac:q59395] [gn:celv1] [or: erwinia carotovora ] [ec:3.2.1.4] [de:(cellulase v1)]
							[sp:q59395] [db:swissprot]
36135878_c2_43	1855	4458	357	118	67	0.045	[ln:hrsdrbc] [ac:176975] [pn:major histocompatibility complex] [gn:drb] [fn:antigen
							binding domain] [or: equus caballus ] [sr:domestic horse] [db:genpept-mam] [de: equus
							caballus mhc class ii dr-beta (drb) gene, exon 2, partialcds.] [nt:putative] [le:<1] [re
36136062_c2_19	1856	4459	624	207	205	1.10E−16	[ac:p31465] [gn:yief] [or: escherichia coli ] [de:hypothetical 20.4 kd protein in tnab-bglb
							intergenic region] [sp:p31465] [db:swissprot]
36140640_f2_26	1857	4460	471	156	429	2.00E−40	[ac:p39300] [gn:yjfr] [or: escherichia coli ] [de:hypothetical 40.3 kd protein in aidb-rpsf
							intergenic region (f356)] [sp:p39300] [db:swissprot]
36147252_f2_6	1858	4461	327	108	73	0.38	[ac:q59978] [gn:grpe:s110057] [or:synechocystis sp] [sr:pcc 6803,] [de:grpe protein]
							[sp:q59978] [db:swissprot]
36147706_c1_41	1859	4462	516	171	85	0.042	[ac:q06242] [gn:vanz] [or: enterococcus faecium ] [sr:, streptococcus faecium ] [de:vanz
							protein] [sp:q06242] [db:swissprot]
36148262_f2_6	1860	4463	486	161	382	1.90E−35	[ac:q10449] [gn:spac12b10.16c] [or: schizosaccharomyces pombe ] [sr:,fission yeast]
							[de:hypothetical 57.2 kd protein c12b10.16c in chromosome i] [sp:q10449]
							[db:swissprot]
36148462_c1_66	1861	4464	1083	360	1121	9.40E−114	[ln:llpepa] [ac:x81089] [pn:glutamyl-aminopeptidase] [gn:pepa] [or: lactococcus lactis ]
							[db:genpept-bct] [de: l.lactis pepa gene.] [le:643] [re:1710] [di:direct]
36152132_f2_14	1862	4465	282	93	356	1.10E−32	[ac:p23828] [gn:rpsq] [or: bacillus stearothermophilus ] [de:30s ribosomal protein s17]
							[sp:p23828] [db:swissprot]
36203262_f2_19	1863	4466	1356	451	114	0.00075	[ln:sgu61158] [ac:u61158] [pn:gdmh] [gn:gdmh] [or: staphylococcus gallinarum ]
							[db:genpept-bct] [de: staphylococcus gallinarum tue3928 gdmf (gdmf), putative
							membraneprotein (gdmh), abc transporter (gdmt), and antibiotic galliderminprecursor
							(gdma) genes, com
36204688_f3_13	1864	4467	378	125	227	5.10E−19	[ln:ab000631] [ac:ab000631] [or: streptococcus mutans ] [sr: streptococcus mutans dna]
							[db:genpept-bct] [de: streptococcus mutans dna for sigma 42 protein,dtdp-4-keto-1-
							rhamnose reductase, complete cds.] [nt:unnamed protein product] [le:1869] [re:2204]
							[di:di
36207767_f2_6	1865	4468	1455	484	1167	1.30E−118	[ac:p39125] [gn:glga] [or: bacillus subtilis ] [ec:2.4.1.21] [de:synthase)] [sp:p39125]
							[db:swissprot]
36209692_f1_8	1866	4469	1590	529	2230	2.90E−231	[ac:q54431:p96469] [gn:ffh] [or: streptococcus mutans ] [de:signal recognition particle
							protein (fifty-four homolog)] [sp:q54431:p96469] [db:swissprot]
36211002_c1_20	1867	4470	1419	472	348	7.40E−38	[ln:spac57a10] [ac:z94864] [pn:unknown] [gn:spac57a10.03] [or: schizosaccharomyces
							pombe ] [sr:fission yeast] [db:genpept-pln] [de: s.pombe chromosome i cosmid c57a10.]
							[nt:spac57a10.03, cyclophilin-related, len:156aa,] [le:5344:5414:5521:5779]
							[re:5373:5455
36214005_f3_9	1868	4471	669	222	376	8.30E−35	[ac:p39694] [gn:comea:come1] [or: bacillus subtilis ] [de:come operon protein 1]
							[sp:p39694] [db:swissprot]
36218763_f2_16	1869	4472	1677	558	1074	9.00E−109	[ac:h69884] [pn:conserved hypothetical protein ymfa] [gn:ymfa] [or: bacillus subtilis ]
							[db:pir]
36219078_f1_4	1870	4473	195	64	75	0.03	[ac:p35116] [gn:nocp] [or: agrobacterium tumefaciens ] [de:nopaline permease atp-
							binding protein p] [sp:p35116] [db:swissprot]
36222187_f3_34	1871	4474	318	105	69	0.69	[ac:s60006] [pn:mad4 protein] [or: mus musculus ] [sr:, house mouse] [db:pir]
36223437_f2_11	1872	4475	1311	436	222	8.70E−16	[ln:scmalrefg] [ac:y07706] [pn:putative maltose-binding protein] [gn:male]
							[or: streptomyces coelicolor ] [db:genpept-bct] [de: s.coelicolor malr, male, malf and
							malg genes.] [le:1620] [re:2891] [di:direct]
36225007_f3_7	1873	4476	597	198	549	3.90E−53	[ac:p42085] [gn:xpt] [or: bacillus subtilis ] [ec:2.4.2.—] [de:xanthine
							phosphoribosyltransferase,] [sp:p42085] [db:swissprot]
36225317_c3_233	1874	4477	432	143	123	5.40E−08	[ac:p11188] [gn:14] [or:bacteriophage phi-29] [de:lysis protein (late protein gp14)]
							[sp:p11188] [db:swissprot]
36226555_c2_90	1875	4478	1500	499	1650	8.30E−170	[ac:p96994] [gn:galt] [or: streptococcus mutans ] [ec:2.7.7.10] [de:galactose-1-phosphate
							uridylyltransferase,] [sp:p96994] [db:swissprot]
36226563_f3_29	1876	4479	717	238	505	1.80E−48	[ln:ae001166] [ac:ae001166:ae000783] [pn:conserved hypothetical protein]
							[gn:bb0644] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 52 of 70) of the complete genome.] [nt:similar to
36226563_f3_3	1877	4480	606	201	261	1.30E−22	[ac:p37494] [gn:yybj] [or: bacillus subtilis ] [de:intergenic region] [sp:p37494]
							[db:swissprot]
36226586_c3_209	1878	4481	234	77	101	1.20E−05	[ac:a64334] [pn:hypothetical protein mj0272] [or: methanococcus jannaschii ] [db:pir]
							[mp:for257413-257652]
36226627_c2_187	1879	4482	282	93	130	9.80E−09	[ln:u88974] [ac:u88974] [pn:orf21] [or: streptococcus thermophilus ] [db:genpept-bct]
							[de: streptococcus thermophilus bacteriophage 01205 dna sequence.] [le:11376]
							[re:11681] [di:direct]
36227067_c2_11	1880	4483	639	212	260	1.60E−22	[ac:f69903] [pn:d-alanyl-d-alanine carboxypeptidase homolog yodj] [gn:yodj]
							[or: bacillus subtilis ] [db:pir]
36227311_c3_115	1881	4484	2415	804	1835	2.10E−189	[ac:a69682] [pn:primosomal replication factor y pria] [gn:pria] [or: bacillus subtilis ]
							[db:pir]
36229628_c1_14	1882	4485	201	66	61	0.0062	[ac:p53168] [gn:yg1061c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 27.5 kd protein in pyc1-ubc2 intergenic region] [sp:p53168]
							[db:swissprot]
36345717_c3_17	1883	4486	1176	391	1711	2.80E−176	[ac:q56115] [gn:pepc] [or: streptococcus thermophilus ] [ec:3.4.22.—] [de:aminopeptidase
							c,] [sp:q56115] [db:swissprot]
36345912_f2_18	1884	4487	183	60	116	8.50E−07	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
36347162_c3_27	1885	4488	1740	579	2428	3.00E−252	[ac:q59925:q59926] [gn:fhs] [or: streptococcus mutans ] [ec:6.3.4.3] [de:synthetase) (fhs)
							(fthfs)] [sp:q59925:q59926] [db:swissprot]
36360910_c2_46	1886	4489	366	121	79	0.029	[ac:p22053] [or:bovine coronavirus:bovine coronavirus] [sr:mebus:quebec,]
							[de:hypothetical protein iorf1] [sp:p22053] [db:swissprot]
36361051_c3_238	1887	4490	189	62	48	0.023	[ac:s53860] [pn:nadh dehydrogenase chain 3] [cl:nadh dehydrogenase (ubiquinone)
							chain 3] [or: mitochondrion acanthamoeba castellanii ] [db:pir]
36363317_c1_36	1888	4491	330	109	282	7.60E−25	[ln:stu73111] [ac:u73111] [pn:glutamine transport atp-binding protein glnq]
							[or: salmonella typhimurium ] [db:genpept-bct] [de: salmonella typhimurium pexb (pexb)
							gene, partial cds andhigh-affinity glutamine transport operon, high-affinity
							periplasmicglutami
36367156_f1_1	1889	4492	426	141	76	0.7	[ac:s58137:s24456] [pn:gene 7 protein] [or:phage spp1] [db:pir]
36367260_c1_25	1890	4493	213	70	64	0.08	[ln:af016485] [ac:af016485] [gn:cyda] [or:halobacterium sp. nrc-1] [db:genpept-bct]
							[de:halobacterium sp. nrc-1 plasmid pnrc100, complete plasmid sequence.] [nt:similar
							to e. coli cytochrome d oxidase subunit i] [le:42257] [re:43705] [di:direct]
36386053_f3_18	1891	4494	873	290	896	6.60E−90	[ac:p55045] [gn:mutm:fpg] [or: streptococcus mutans ] [ec:3.2.2.23] [de:glycosylase)]
							[sp:p55045] [db:swissprot]
36424037_c1_7	1892	4495	327	108	289	1.40E−25	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cps1) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
36424037_c2_19	1893	4496	327	108	275	4.20E−24	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
36424037_f2_13	1894	4497	327	108	296	2.50E−26	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cps1) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
36424037_f2_5	1895	4498	327	108	288	1.80E−25	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cps1) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
36424037_f2_9	1896	4499	801	266	1235	7.90E−126	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
36424037_f3_24	1897	4500	327	108	280	1.20E−24	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
36442338_c3_33	1898	4501	246	81	66	0.46	[ac:s75730:s50064] [pn:biof protein] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803, ] [db:pir]
36446008_f2_1	1899	4502	207	68	42	0.15	[ac:a49591:s37435] [pn:spike protein] [gn:s] [cl:coronavirus e2 glycoprotein]
							[or:porcine epidemic diarrhea virus] [db:pir]
36517300_c1_33	1900	4503	2178	725	1841	4.80E−190	[ac:p50640] [gn:nrde] [or: mycobacterium tuberculosis ] [ec:1.17.4.1] [de:(ribonucleotide
							reductase) (r1 subunit) (fragment)] [sp:p50640] [db:swissprot]
36523552_c3_43	1901	4504	2451	816	976	1.00E−178	[ac:p37571] [gn:mecb:clpc] [or: bacillus subtilis ] [de:negative regulator of genetic
							competence mecb] [sp:p37571] [db:swissprot]
36537877_c2_70	1902	4505	768	255	143	6.10E−08	[ln:aopcza361] [ac:aj223998] [pn:pcza361.23] [or: amycolatopsis orientalis ]
							[db:genpept] [de: amycolatopsis orientalis cosmid pcza361.] [le:7732] [re:8556]
36542135_f3_27	1903	4506	6717	2238	308	1.80E−38	[ln:temela] [ac:y08557] [pn:lactase] [gn:laca] [or: thermoanaerobacter ethanolicus ]
							[db:genpept-bct] [ec:3.2.1.23] [de: t.ethanolicus mela and laca genes.] [nt:beta-
							galactosidase] [le:1061] [re:3292] [di:direct]
36589844_c1_24	1904	4507	1241	413	2042	2.40E−211	[ln:spaliag] [ac:z35135] [pn:alia] [gn:alia] [fn:oligopeptide-binding protein]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: s.pneumoniae alia gene for amia-
							like gene a.] [le:66] [re:2048] [di:direct]
36594032_f1_1	1905	4508	276	91	150	7.40E−11	[ac:p37283] [gn:groes] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[de:10 kd chaperonin (protein cpn10) (protein groes)] [sp:p37283] [db:swissprot]
36595336_c2_42	1906	4509	1353	450	1234	1.00E−125	[ac:c69662] [pn:udp-n-acetylmuramate-alanine ligase murc] [gn:murc] [or: bacillus
							subtilis] [db:pir]
36598437_f3_31	1907	4510	1140	379	209	1.10E−27	[ac:p20590] [gn:hinfim] [or: haemophilus influenzae ] [ec:2.1.1.72]
							[de:methyltransferase hinfi) (m.hinfi)] [sp:p20590] [db:swissprot]
36600717_c3_31	1908	4511	1056	351	478	1.30E−45	[ac:q58092] [gn:mj0679] [or: methanococcus jannaschii ] [ec:2.2.1.1] [de:putative
							transketolase c-terminal section, (tk)] [sp:q58092] [db:swissprot]
36601588_c3_21	1909	4512	432	143	62	0.24	[ac:p14159] [or: ovis aries ] [sr:,sheep] [de:homeobox protein hox-8.1 (fragment)]
							[sp:p14159] [db:swissprot]
36602262_f1_7	1910	4513	249	82	75	0.14	[ln:cef15a2] [ac:z70207] [pn:f15a2.6] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid f15a2, complete sequence.] [nt:protein predicted
							using genefinder; similarity to] [le:19512:20228:21046] [re:19596:20393:21127]
							[di:comple
36603513_f1_2	1911	4514	1536	511	1267	3.20E−129	[ln:ae001166] [ac:ae001166:ae000783] [pn:pts system, glucose-specific iibc
							component] [gn:bb0645] [or: borrelia burgdorferi ] [sr:lyme disease spirochete]
							[db:genpept-bct] [de: borrelia burgdorferi (section 52 of 70) of the complete genome.]
39010_c3_52	1912	4515	639	212	94	0.0099	[ac:e69743] [pn:hypothetical protein ybba] [gn:ybba] [or: bacillus subtilis ] [db:pir]
3906300_f2_5	1913	4516	942	313	1187	9.60E−121	[ac:p54380] [gn:glyq] [or: bacillus subtilis ] [ec:6.1.1.14] [de:alpha chain) (glyrs)]
							[sp:p54380] [db:swissprot]
39063_f1_2	1914	4517	336	111	242	1.20E−19	[ln:ae001146] [ac:ae001146:ac000783] [pn:pts system, fructose-specific iiabc
							component] [gn:bb0408] [or: borrelia burgdorferi ] [sr:lyme disease spirochete]
							[db:genpept-bct] [de: borrelia burgdorferi (section 32 of 70) of the complete genome.]
							[nt:similar to
3906502_f3_21	1915	4518	186	61	64	0.11	[ln:pcu53921] [ac:u53921] [pn:major surface glycoprotein] [gn:msg] [or: pneumocystis
							carinii ] [db:genpept-pln] [de: pneumocystis carinii major surface glycoprotein (msg)
							gene, partialcds.] [nt:gpa; expression site of msg; encodes leader] [le:<1940:2187] [re
3906693_f3_41	1916	4519	888	295	594	6.60E−58	[ln:cdu02617] [ac:u02617] [pn:dtxr/iron regulated lipoprotein precursor] [gn:irp1]
							[fn:iron transport] [or: corynebacterium diphtheriae ] [db:genpept-bct]
							[de: corynebacterium diphtheriae dtxr/iron-regulated lipoproteinprecursor (irp1) gene,
3907012_c3_84	1917	4520	267	88	143	1.90E−09	[ac:p00886] [gn:arog] [or: escherichia coli ] [ec:4.1.2.15] [de:synthetase) (3-deoxy-d-
							arabino-heptulosonate 7-phosphate synthase)] [sp:p00886] [db:swissprot]
3907151_c1_18	1918	4521	327	108	103	7.10E−06	[ac:s51910] [pn:cryptogene protein g4] [or: leishmania tarentolae ] [sr:strain lem125, ,
							strain lem125] [sr:strain lem125, ] [db:pir]
390717_c3_41	1919	4522	336	111	143	4.10E−10	[ac:q46213] [or: clostridium perfringens ] [de:hypothetica1 10.7 kd protein in virr
							5′region (orf2)] [sp:q46213] [db:swissprot]
3907637_c2_49	1920	4523	207	68	202	2.30E−16	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
3907837_c3_59	1921	4524	633	210	101	0.0058	[ac:s75088] [pn:hypothetical protein s110245] [or:synechocystis sp.] [sr:pcc 6803, , pcc
							6803] [sr:pcc 6803, ] [db:pir]
391087_c3_75	1922	4525	255	84	75	0.015	[ln:mtu19362] [ac:u19362] [pn:unknown] [or: methanobacterium thermoautotrophicum ]
							[db:genpept-bct] [de: methanobacterium thermoautotrophicum methylene-
							tetrahydromethanopterin dehydrogenase (mtd), imidazoleglycerol-phosphate
							dehydrogenase (hisb), and putative]
3912943_c3_45	1923	4526	555	184	316	1.90E−28	[ln:sadnas25] [ac:x87105] [gn:mdr] [fn:multidrug resistance] [or: staphylococcus
							aureus ] [db:genpept-bct] [de: s.aureus mdr, pbp4 and taqd genes (pvi-25 isolate).]
							[le:316] [re:1287] [di:complement]
3914687_f1_15	1924	4527	1029	342	687	9.20E−68	[ac:a69653] [pn:transmembrane lipoprotein lplb] [gn:lplb] [or: bacillus subtilis ] [db:pir]
3914812_f1_4	1925	4528	318	105	117	3.40E−06	[ln:aopcza363] [ac:aj223999] [pn:pcza363.2] [or: amycolatopsis orientalis ] [db:genpept]
							[de: amycolatopsis orientalis cosmid pcza363.] [nt:similar to mdr/abc transporter]
							[le:1562] [re:3514] [di:direct]
392042_c3_202	1926	4529	315	104	72	0.47	[ac:a48572] [pn:rhoptry protein homolog] [or: babesia ovis ] [db:pir]
3922090_f1_14	1927	4530	546	181	171	4.40E−13	[ln:mgu02192] [ac:u02192] [or: mycoplasma genitalium ] [db:genpept-bct]
							[de: mycoplasma genitalium random genomic clone sf2, partial cds.] [nt:homology to
							surface protein antigen d90354] [le:1] [re:355] [di:complement]
3922188_c3_13	1928	4531	963	320	435	4.70E−41	[ac:p54538] [gn:yqja] [or: bacillus subtilis ] [de:hypothetical 37.1 kd protein in bmru-
							ansr intergenic region] [sp:p54538] [db:swissprot]
3923192_f2_20	1929	4532	954	317	1009	7.00E−102	[ac:p37887] [gn:cysk] [or: bacillus subtilis ] [ec:4.2.99.8] [de:(o-acetylserine (thiol)-
							lyase) (csase)] [sp:p37887] [db:swissprot]
392328_f2_3	1930	4533	801	266	105	0.002	[ac:q49418] [gn:mg327] [or: mycoplasma genitalium ] [ec:3.1.—.—] [de:putative
							esterase/lipase 2,] [sp:q49418] [db:swissprot]
3924137_c3_28	1931	4534	1968	655	1752	1.30E−180	[ac:f69794] [pn:dna ligase homolog yerg] [gn:yerg] [or: bacillus subtilis ] [db:pir]
3925068_f3_57	1932	4535	558	185	173	2.70E−13	[ac:b69985] [pn:hypothetical protein yshb] [gn:yshb] [or: bacillus subtilis ] [db:pir]
3931502_f1_9	1933	4536	2406	801	1753	1.00E−180	[ac:a69676] [pn:phenylalanyl-trna synthetase (beta subunit) phet] [gn:phet] [or: bacillus
							subtilis ] [db:pir]
3932650_f1_2	1934	4537	243	80	89	0.0018	[ac:g69295] [pn:oxalate/formate antiporter (oxlt-2) homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
3932687_c2_67	1935	4538	303	100	296	2.50E−26	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
3932963_c2_43	1936	4539	783	260	270	1.40E−23	[ac:p26422] [gn:lacr] [or: streptococcus mutans ] [de:lactose phosphotransferase system
							repressor] [sp:p26422] [db:swissprot]
3937561_c1_19	1937	4540	1965	654	111	0.024	[ac:p52438] [gn:u30] [or:herpes simplex virus] [sr:type 7/ji,hhv7] [de:capsid assembly
							protein u30] [sp:p52438] [db:swissprot]
3937588_f2_11	1938	4541	807	268	244	8.10E−21	[ac:p39608] [gn:ywcj:ipa-48r] [or: bacillus subtilis ] [de:hypothetical 28.4 kd protein in
							sact-sacp intergenic region] [sp:p39608] [db:swissprot]
3937842_c1_10	1939	4542	1320	439	1207	7.30E−123	[ac:a69662] [pn:udp-n-acetylglucosamine 1-carboxyvinyltransferase mura] [gn:mura]
							[or: bacillus subtilis ] [db:pir]
3937875_c2_100	1940	4543	2820	939	2707	8.10E−282	[ac:h69643] [pn:isoleucyl-trna synthetase iles] [gn:iles] [or: bacillus subtilis ] [db:pir]
3939625_f1_11	1941	4544	330	109	375	1.10E−34	[ln:ab011419] [ac:ab011419] [pn:phospho-beta-galactosidase ii] [gn:pbg2]
							[or: lactobacillus gasseri ] [sr: lactobacillus gasseri (strain:jcm 1031, isolate:human
							intestine] [db:genpept] [de: lactobacillus gasseri gene for phospho-beta-galactosidase
							ii, complete
3943803_f1_18	1942	4545	297	98	67	0.045	[ln:mtbxdha] [ac:148243] [pn:dehydrogenase] [gn:xdha] [or: methylobacterium
							extorquens ] [db:genpept-bct] [de: methylobacterium extorquens dehydrogenase (xdha)
							gene, partial cds.] [le:<1] [re:
3944452_c1_12	1943	4546	360	119	334	2.40E−30	[ac:q02009] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ] [de:hypothetical
							13.3 kd protein in trpe 5′region] [sp:q02009] [db:swissprot]
3945165_f2_10	1944	4547	804	267	158	1.90E−09	[ln:mtv012] [ac:a1021287] [pn:hypothetical protein mtv012.53c] [gn:mtv012.53c]
							[or: mycobacterium tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis
							sequence v012.] [nt:mtv012.53c, len: 327. unknown, low similarity to] [le:54433]
							[re:55416] [di:
3945180_c1_9	1945	4548	816	271	1432	5.00E−163	[ac:p09358] [gn:dpna] [or: streptococcus pneumoniae ] [ec:2.1.1.72]
							[de:methyltransferase dpnii 2) (m.dpnii 2)] [sp:p09358] [db:swissprot]
3945256_c1_77	1946	4549	636	211	81	0.93	[ln:ab007892] [ac:ab007892] [gn:kiaa0432] [or: homo sapiens ] [sr: homo sapiens male
							brain cdna to mrna, clone_lib:pbluescriptii s] [db:genpept-pri2] [de: homo sapiens
							kiaa0432 mrna, complete cds.] [le:964] [re:2967] [di:direct]
3945463_f3_17	1947	4550	909	302	1465	3.30E−150	[ln:ab003804] [ac:ab003804] [pn:gtp-binding protein] [gn:sgg] [or: streptococcus
							gordonii] [sr:streptococcus gordonii (strain:challis) dna] [db:genpept-bct]
							[de: streptococcus gordonii gene for gtp-binding protein, complete cds.] [le:61] [re:960]
							[di:direct
3946967_f3_57	1948	4551	1329	442	725	8.70E−72	[ac:p35636] [gn:inva] [or: zymomonas mobilis ] [ec:3.2.1.26] [de:(invertase e1)]
							[sp:p35636] [db:swissprot]
3947177_f3_49	1949	4552	513	170	335	1.80E−30	[ac:p46543] [or: lactobacillus delbrueckii ] [sr:,subsplactis] [de:hypothetical 19.8 kd
							protein in pepi 3′region] [sp:p46543] [db:swissprot]
3947305_f3_45	1950	4553	726	241	462	6.40E−44	[ac:d64672] [pn:abc transporter, atp-binding protein] [or: helicobacter pylori ] [db:pir]
3948438_c1_166	1951	4554	243	80	74	0.012	[ln:hpv3] [ac:x74462] [pn:envelope protein] [gn:e6] [or:human papillomavirus type 3]
							[db:genpept-vrl] [de:human papillomavirus type 3 genomic dna.] [le:114] [re:560]
							[di:direct]
3948537_c3_219	1952	4555	627	208	118	0.0002	[ac:s22452:s22069] [pn:surface exclusion protein seal precursor] [gn:seal]
							[or: enterococcus faecalis ] [db:pir]
3948592_f2_23	1953	4556	1098	365	753	9.40E−75	[ln:pbu42580] [ac:u42580:u17055:u32570] [gn:a638r] [or: paramecium bursaria
							chlorella virus 1] [db:genpept-vrl] [de: paramecium bursaria chlorella virus 1, complete
							genome.] [le:307857] [re:308939] [di:direct]
395167_c2_42	1954	4557	435	144	291	8.50E−26	[ln:soorfs] [ac:z79691] [pn:orfc] [gn:yorfc] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae yorf[a,b,c,d,e], ftsl, pbpx and regr genes.] [le:2427] [re:2618]
							[di:direct]
3953213_c2_44	1955	4558	426	141	91	0.016	[ln:mhaj1652] [ac:aj001652] [pn:vaa surface lipoprotein adhesin precursor] [gn:vaa]
							[or: mycoplasma hominis ] [db:genpept-bct] [de: mycoplasma hominis vaa gene, category
							3, strain 4195.] [le:64] [re:1125] [di:direct]
3955063_c3_79	1956	4559	693	230	377	6.50E−35	[ac:d69786] [pn:glycoprotein endopeptidase homolog ydic] [gn:ydic] [or: bacillus
							subtilis ] [db:pir]
3958330_c3_39	1957	4560	1407	468	481	6.20E−46	[ln:lpplsabkr] [ac:y15127] [pn:histidine kinase] [gn:plsk] [or: lactobacillus plantarum ]
							[db:genpept-bct] [de: lactobacillus plantarum plsa, plsb, plsk & plsr genes.] [nt:putative]
							[le:2564] [re:3844] [di:direct]
3960325_f1_5	1958	4561	513	170	548	5.00E−53	[ac:p96053] [gn:recr:recm] [or: streptococcus thermophilus ] [de:recombination protein
							recr] [sp:p96053] [db:swissprot]
3961507_f3_40	1959	4562	339	112	198	6.10E−16	[ln:spz82002] [ac:z82002] [pn:pcpc] [gn:pcpc] [fn:unknown] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: s.pneumoniae pcpb and pcpc genes.] [nt:pcpc
							contains a choline binding domain] [le:1401] [re:2285] [di:direct]
3961592_f2_22	1960	4563	1791	596	3033	0	[ln:strspxb] [ac:139074] [pn:pyruvate oxidase] [gn:spxb] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae pyruvate oxidase (spxb) gene,
							completecds.] [nt:tpp binding consensus sequence (x5,gly,asp,gly,] [le:154] [re:1929]
							[di:di
3963452_c2_21	1961	4564	510	169	152	4.60E−11	[ac:b70006] [pn:hypothetical protein yuai] [gn:yuai] [or: bacillus subtilis ] [db:pir]
3964092_c3_50	1962	4565	744	247	113	0.00012	[ln:af007261] [ac:af007261] [pn:channel subunit of abc transporter for] [gn:yejv]
							[or: mitochondrion reclinomonas americana ] [sr: reclinomonas americana ] [db:genpept-
							inv] [de: reclinomonas americana mitochondrial dna, complete genome.] [le:46089]
							[re:46763]
3964713_f2_7	1963	4566	954	317	785	3.80E−78	[ac:d65208:a93686:a91798:s05690:a05053:jv0023] [pn:homoserine o-
							succinyltransferase,:homoserine o-transsuccinylase] [gn:meta] [cl:homoserine
							succinyltransferase] [or: escherichia coli ] [ec:2.3.1.46] [db:pir] [mp:91]
3985832_f3_13	1964	4567	981	326	1000	6.30E−101	[ln:efaj3331] [ac:aj223331] [pn:carbamate kinase] [gn:arcc] [fn:synthesis of atp from
							carbamylphosphate] [or: enterococcus faecium ] [db:genpept] [ec:2.7.2.2]
							[de: enterococcus faecium arcc gene, complete cds.] [le:1] [re:933] [di:direct]
3987540_c3_35	1965	4568	216	71	83	0.0083	[ln:af007261] [ac:af007261] [pn:secy-type transporter protein] [gn:secy]
							[or: mitochondrion reclinomonas americana ] [sr: reclinomonas americana ] [db:genpept-
							inv] [de: reclinomonas americana mitochondrial dna, complete genome.] [le:28012]
							[re:29244] [di:direc
3992000_f2_33	1966	4569	225	74	200	6.00E−16	[ln:spu11799] [ac:u11799] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes insertion sequence is1239 putativetransposase gene,
							complete cds.] [nt:putative transposase] [le:379] [re:1359] [di:direct]
3994002_c2_32	1967	4570	714	237	1042	2.20E−105	[ac:q56037] [gn:deod] [or: streptococcus thermophilus ] [ec:2.4.2.1] [de:(pnp)
							(fragment)] [sp:q56037] [db:swissprot]
3995675_c1_159	1968	4571	1494	497	486	1.80E−46	[ln:u88974] [ac:u88974] [pn:orf27] [or: streptococcus thermophilus ] [db:genpept-bct]
							[de: streptococcus thermophilus bacteriophage 01205 dna sequence.] [nt:putative portal
							protein] [le:15560] [re:17065] [di:direct]
4000443_f1_7	1969	4572	1113	370	1008	8.90E−102	[ac:p43901] [gn:tyra] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:1.3.1.12] [de:prephenate dehydrogenase, (pdh)] [sp:p43901] [db:swissprot]
4000461_f3_22	1970	4573	612	204	193	2.10E−15	[ac:c69879] [pn:hypothetical protein ylos] [gn:ylos] [or: bacillus subtilis ] [db:pir]
4001312_c3_242	1971	4574	288	95	66	0.5	[ac:jt0902] [pn:chaperonin 60 beta] [gn:cpn60 beta] [cl:chaperonin groel] [or: triticum
							aestivum ] [sr:, common wheat] [db:pir]
400412_f3_17	1972	4575	258	85	104	5.50E−05	[ac:p95789] [gn:atpd] [or: streptococcus mutans ] [ec:3.6.1.34] [de:atp synthase beta
							chain,] [sp:p95789] [db:swissprot]
4011002_c3_25	1973	4576	192	63	123	5.40E−08	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
4016088_c3_126	1974	4577	669	222	417	3.80E−39	[ac:f69633] [pn:glutamine abc transporter (membrane protein) glnp] [gn:glnp]
							[or: bacillus subtilis ] [db:pir]
4016911_f1_6	1975	4578	186	61	100	1.50E−05	[ac:c64671] [pn:hypothetical protein hp1211] [or: helicobacter pylori ] [db:pir]
4017135_c3_42	1976	4579	1692	563	2215	1.10E−229	[ln:sgcshag] [ac:x65164:s52427] [pn:fibronectin-binding protein-like protein a]
							[gn:flpa] [or: streptococcus gordonii ] [db:genpept-bct] [de: s.gordonii partial aldb gene,
							csha gene & flpa gene.] [le:8248] [re:9900] [di:complement]
4017592_c2_112	1977	4580	450	149	271	1.10E−23	[ln:shu75349] [ac:u75349] [pn:periplasmic-iron-binding protein shia] [or: serpulina
							hyodysenteriae ] [db:genpept-bct] [de: serpulina hyodysenteriae shi-operon, periplasmic-
							iron-bindingproteins shia and shib, putative abc transporter shic, and putativepermeas
4017592_c2_47	1978	4581	240	79	131	7.60E−09	[ln:apu96137] [ac:u96137] [or:anabaena pcc7120] [db:genpept-bct] [de:anabaena
							pcc7120 apceabc gene cluster, phycobilisome core-membranelinker protein (apce),
							allophycocyanin alpha subunit (apca),allophycocyanin beta subunit (apcb) and
							phycobilisome core 1
4017592_c2_54	1979	4582	183	60	94	0.00038	[ln:s80872] [ac:s80872] [gn:orf1 3′ ofant1 5′insertion site] [or: aspergillus niger ]
							[sr: aspergillus niger transposon ant1 chlorate-resistant mutant 46] [db:genpept-pln]
							[de:orf1 3′ of ant1 5′insertion site {niad insertion site}[ aspergillus niger , chlor
4019662_f2_19	1980	4583	246	81	273	6.90E−24	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
4023500_c3_146	1981	4584	297	98	53	0.58	[ln:sneliptra] [ac:133791] [pn:lipid transfer protein] [or: senecio odorus ] [sr: senecio
							odorus cdna to mrna] [db:genpept-pln] [de: senecio odorus lipid transfer protein mrna, 3′
							end.] [le:<1] [re:272] [di:direct]
4026703_f3_38	1982	4585	1644	547	1087	3.80E−110	[ln:lmu15554] [ac:u15554] [pn:p-type adenosine triphosphatase] [gn:ctpa] [fn:involved
							in cation transport] [or: listeria monocytogenes ] [db:genpept-bct] [de: listeria
							monocytogenes p-type adenosine triphosphatase (ctpa) gene,partial cds.] [nt:similar to
							ent
4031693_c1_35	1983	4586	297	98	72	0.046	[ac:h69402] [pn:hypothetical protein af1225] [or: archaeoglobus fulgidus ] [db:pir]
4032812_c2_67	1984	4587	585	194	709	4.30E−70	[ln:spgyrbg] [ac:x83917] [gn:orflgyrb] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae orflgyrb and gyrb gene encoding dna gyrase b subunit.] [le:<1]
							[re:437] [di:direct]
4032812_f3_43	1985	4588	1068	355	1147	1.70E−116	[ac:q46127] [gn:trps:trsa] [or: clostridium longisporum ] [ec:6.1.1.2] [de:(trprs)]
							[sp:q46127] [db:swissprot]
4033187_f1_4	1986	4589	441	146	60	0.39	[ln:mmu91573] [ac:u91573] [pn:glucose-6-phosphatase] [gn:g6pase] [or: mus musculus ]
							[sr:house mouse] [db:genpept-rod] [de: mus musculus glucose-6-phosphatase (g6pase)
							gene, exon 1 andpartial cds.] [le:834] [re:
4035910_f1_21	1987	4590	492	163	654	2.90E−64	[ac:p42920] [gn:rplc] [or: bacillus subtilis ] [de:50s ribosomal protein 13 (b13)]
							[sp:p42920] [db:swissprot]
40637_f1_11	1988	4591	186	61	112	7.90E−07	[ln:spnana] lac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
4064062_f1_9	1989	4592	1704	567	371	5.50E−34	[ac:p17867] [gn:cisa:spoivca] [or: bacillus subtilis ] [de:putative dna recombinase]
							[sp:p17867] [db:swissprot]
406681_f2_39	1990	4593	189	62	49	0.064	[ln:ae001160] [ac:ae001160:ac000783] [pn:competence locus e, putative] [gn:bb0591]
							[or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct] [de: borrelia
							burgdorferi (section 46 of 70) of the complete genome] [nt:similar to gb:115202 sp:p39
4067765_c1_34	1991	4594	456	151	324	2.70E−29	[ac:o07513] [gn:hit] [or: bacillus subtilis ] [de:hit protein] [sp:o07513] [db:swissprot]
4070463_f3_19	1992	4595	1980	659	2117	2.70E−219	[ac:p22976] [gn:recp] [or: streptococcus pneumoniae ] [ec:2.2.1.1] [de:probable
							transketolase, (tk)] [sp:p22976] [db:swissprot]
4078336_f2_1	1993	4596	1854	617	2456	3.20E−255	[ac:p22976] [gn:recp] [or: streptococcus pneumoniae ] [ec:2.2.1.1] [de:probable
							transketolase, (tk)] [sp:p22976] [db:swissprot]
4078588_c1_46	1994	4597	324	107	236	5.70E−20	[ac:p46319] [gn:celc] [or: bacillus subtilis ] [ec:2.7.1.69] [de:(ec 2.7.1.69) (eiii-cel)]
							[sp:p46319] [db:swissprot]
4080007_c2_68	1995	4598	339	112	33	0.91	[ac:p48883] [gn:clpp] [or: hordeum vulgare ] [sr:,barley] [ec:3.4.21.92] [de:(fragment)]
							[sp:p48883] [db:swissprot]
4080262_f3_15	1996	4599	1083	360	1690	4.80E−174	[ac:q54513] [or: streptococcus pneumoniae ] [de:transposase for insertion sequence
							is1202] [sp:q54513] [db:swissprot]
4085900_c3_67	1997	4600	1203	400	1963	5.60E−203	[ln:spdnaarg] [ac:af000658] [pn:putative serine protease] [gn:sphtra] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae r801 trna-arg gene, partial
							sequence, andputative serine protease (sphtra), spspoj (spspoj), initiatorprotein
40881_f2_10	1998	4601	933	310	1076	5.50E−109	[ac:p23391] [gn:lacc] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.7.1.—] [de:tagatose-6-phosphate kinase, (phosphotagatokinase)] [sp:p23391]
							[db:swissprot]
4094713_c3_51	1999	4602	990	329	887	5.90E−89	[ln:ehy13922] [ac:y13922:y15222] [gn:mray] [or: enterococcus hirae ] [db:genpept-bct]
							[de: enterococcus hirae mrar, pbp3s, mray, murd, murg, ftsq and ftsagenes, mraw, yllc
							and ftsz partial genes.] [le:4104] [re:5069] [di:direct]
4095317_c1_12	2000	4603	990	329	1485	2.50E−152	[ac:p05382] [gn:sula] [or: streptococcus pneumoniae ] [ec:2.5.1.15]
							[de:pyrophosphorylase)] [sp:p05382] [db:swissprot]
4095328_c1_20	2001	4604	2073	690	641	6.90E−63	[ln:mtcy71] [ac:z92771] [pn:unknown] [gn:mtcy71.10] [or: mycobacterium
							tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis cosmid y71.]
							[nt:mtcy71.10, cation transport atpase, len: 718 aa,] [le:10205] [re:12361] [di:direct]
4095337_c1_49	2002	4605	1068	355	425	5.40E−40	[ln:ae001176] [ac:ae001176:ae000783] [pn:udp-n-acetylglucosamine--n-acetylmuramyl-]
							[gn:bb0767] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 62 of 70) of the complete genome.] [nt:similar to gb:
4095443_f3_31	2003	4606	240	79	156	1.70E−11	[ac:b69770] [pn:conserved hypothetical protein ydas] [gn:ydas] [or: bacillus subtilis ]
							[db:pir]
40968_c1_22	2004	4607	861	286	525	1.40E−50	[ac:q58094] [gn:mj0681] [or: methanococcus jannaschii ] [ec:2.2.1.1] [de:putative
							transketolase n-terminal section, (tk)] [sp:q58094] [db:swissprot]
4100425_f1_1	2005	4608	261	86	150	7.40E−11	[ac:c69701] [pn:ribosomal protein s20 (bs20) rpst] [gn:rpst] [or: bacillus subtilis ]
							[db:pir]
4100453_f1_10	2006	4609	1419	472	54	0.57	[ln:hiv1ul3498] [ac:ul3498] [pn:envelope glycoprotein v1v2 region] [gn:env]
							[or:human immunodeficiency virus type 1] [db:genpept-vrl] [de:human
							immunodeficiency virus type 1, isolate 020 from brazil,envelope glycoprotein (env)
							gene, v1v2 region, partial c
4101062_c3_115	2007	4610	240	79	82	0.022	[ac:a56034] [pn:insulin activator factor] [or: homo sapiens ] [sr:, man] [db:pir]
4101592_c3_36	2008	4611	585	194	429	2.00E−40	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
4101687_f2_7	2009	4612	2364	787	1589	2.40E−163	[ac:g70027] [pn:conserved hypothetical protein yvaj] [gn:yvaj] [or: bacillus subtilis ]
							[db:pir]
4101693_c3_31	2010	4613	474	157	845	1.70E−84	[ac:p41354] [gn:mutx] [or: streptococcus pneumoniae ] [ec:3.6.1.—] [de:(8-oxo-dgtpase),
							(dgtp pyrophosphohydrolase)] [sp:p41354] [db:swissprot]
4102318_f1_2	2011	4614	846	281	1144	3.50E−116	[ac:p04257] [gn:rplb] [or: bacillus stearothermophilus ] [de:50s ribosomal protein 12]
							[sp:p04257] [db:swissprot]
4103127_c3_65	2012	4615	1866	621	2409	3.10E−250	[ac:e69872] [pn:gtp-binding elongation factor homolog ylag] [gn:ylag] [or: bacillus
							subtilis ] [db:pir]
4103516_c1_73	2013	4616	357	118	286	2.90E−25	[ac:b69970] [pn:transcriptional regulator (merr family) homolog yrab] [gn:yrab]
							[or: bacillus subtilis ] [db:pir]
4104693_c1_28	2014	4617	1059	352	1853	2.60E−191	[ln:af030359] [ac:af030359] [pn:dtdp-glucose-4,6-dehydratase] [gn:cpsn]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae strain
							nctc11906 glucose-1-phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-
							keto-6-deoxygl
4105263_f2_19	2015	4618	963	320	419	2.30E−39	[ac:g70003] [pn:hypothetical protein ytxk] [gn:ytxk] [or: bacillus subtilis ] [db:pir]
4105330_f1_11	2016	4619	1866	621	847	7.10E−156	[ac:g69682] [pn:prolyl-trna synthetase pros] [gn:pros] [or: bacillus subtilis ] [db:pir]
4109462_f1_3	2017	4620	1185	394	738	3.60E−73	[ac:p39587] [gn:ywbd:ipa-19d] [or: bacillus subtilis ] [de:hypothetical 44.4 kd protein in
							epr-galk intergenic region] [sp:p39587] [db:swissprot]
4112557_f1_1	2018	4621	828	275	276	3.30E−24	[ac:h64428] [pn:magnesium and cobalt transport protein homolog] [or: methanococcus
							jannaschii ] [db:pir] [mp:for965089-966042]
4117132_f2_18	2019	4622	597	198	157	1.30E−11	[ac:b69524] [pn:rrna (adenine-n6)-methyltransferase homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
4119012_c2_67	2020	4623	243	80	209	4.20E−17	[ac:p39579] [gn:dltc:ipa-3r] [or: bacillus subtilis ] [de:d-alanyl carrier protein (dcp)]
							[sp:p39579] [db:swissprot]
4119052_c2_79	2021	4624	732	243	402	1.50E−37	[ac:p35154] [gn:ypug] [or: bacillus subtilis ] [de:hypothetical 29.6 kd protein in ribt-dacb
							intergenic region (orfx7)] [sp:p35154] [db:swissprot]
4119062_c1_21	2022	4625	948	315	246	5.00E−21	[ln:nmu65788] [ac:u65788] [pn:glycosyl transferase] [gn:lgtc] [or: neisseria
							meningitidis ] [db:genpept-bct] [de: neisseria meningitidis strain 126e glycyl trna
							synthetase (glys)gene, partial cds, and lps biosynthetic gene locus, lgta/lgtb,lgtc, lgtd,
							and lg
4146882_f1_13	2023	4626	639	212	102	0.0022	[ac:e69816] [pn:hypothetical protein ygaj] [gn:ygaj] [or: bacillus subtilis ] [db:pir]
4146950_f3_56	2024	4627	1713	570	240	2.80E−17	[ac:p37966] [gn:lpla] [or: bacillus subtilis ] [de:lipoprotein lpla precursor] [sp:p37966]
							[db:swissprot]
4149018_f3_33	2025	4628	2268	755	1919	5.50E−206	[ac:a69601] [pn:atp-dependent clp proteinase-like protein clpe] [gn:clpe] [or: bacillus
							subtilis ] [db:pir]
4151511_c2_38	2026	4629	585	194	331	4.90E−30	[ac:p43984] [gn:hi0318] [or: haemophilus influenzae ] [de:hypothetical protein hi0318]
							[sp:p43984] [db:swissprot]
4151693_f1_6	2027	4630	1176	391	1090	1.80E−110	[ac:q59803] [gn:aroc] [or: staphylococcus aureus ] [ec:4.6.1.4] [de:phospholyase)]
							[sp:q59803] [db:swissprot]
4152217_f2_11	2028	4631	1476	491	350	4.20E−30	[ac:f69848] [pn:transcriptional antiterminator (bglg famil) homolog yjdc] [gn:yjdc]
							[or: bacillus subtilis ] [db:pir]
417068_f2_26	2029	4632	654	217	444	5.20E−42	[ac:q02002] [gn:trpf] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:5.3.1.24] [de:n-(5′-phosphoribosyl)anthranilate isomerase, (prai)] [sp:q02002]
							[db:swissprot]
4173463_c1_27	2030	4633	558	185	111	1.10E−06	[ac:p20298] [or: pyrococcus woesei ] [de:hypothetical protein in gapdh 3′region (orf x)
							(fragment)] [sp:p20298] [db:swissprot]
4173468_c1_15	2031	4634	573	190	109	6.10E−05	[ac:h69908] [pn:phage-related protein homolog yokl] [gn:yokl] [or: bacillus subtilis ]
							[db:pir]
4173577_c2_67	2032	4635	795	264	694	1.70E−68	[ac:f69742] [pn:hypothetical protein ybaf] [gn:ybaf] [or: bacillus subtilis ] [db:pir]
4176260_f3_47	2033	4636	267	88	66	0.43	[ln:pbu42580] [ac:u42580:u17055:u32570] [gn:a2561] [or: paramecium bursaria
							chlorella virus 1] [db:genpept-vrl] [de: paramecium bursaria chlorella virus 1, complete
							genome.] [le:129625] [re:130860] [di:complement]
4178570_f2_22	2034	4637	396	131	205	1.70E−16	[ac:p23877:p77587] [gn:fepg] [or: escherichia coli ] [de:ferric enterobactin transport
							protein fepg] [sp:p23877:p77587] [db:swissprot]
4179663_f1_13	2035	4638	189	62	69	0.34	[ln:ae001131] [ac:ae001131:ae000783] [pn: b. burgdorferi predicted coding region
							bb0208] [gn:bb0208] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-
							bct] [de: borrelia burgdorferi (section 17 of 70) of the complete genome.] [nt:hypothetic
4179702_f3_26	2036	4639	1488	495	459	1.30E−43	[ln:af004325] [ac:af004325] [pn:putative oligosaccharide repeat unit] [gn:cps19bj]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae capsular
							serotype 19b capsule biosynthesislocus, cps 19bf gene, partial cds, cps19bg, cps19bh, cp
4179837_c3_69	2037	4640	1473	490	1246	5.40E−127	[ac:i41293] [pn:ecoe type i restriction modification enzyme m subunit] [or: escherichia
							coli] [db:pir]
4179838_f2_16	2038	4641	996	331	1126	2.80E−114	[ac:p44779] [gn:fuci:hi0614] [or: haemophilus influenzae ] [ec:5.3.1.—] [de:1-fucose
							isomerase,] [sp:p44779] [db:swissprot]
4180385_c2_102	2039	4642	2421	806	78	0.064	[ln:hpu21867] [ac:u21867] [pn:11 protein] [or:human papillomavirus type 23]
							[db:genpept-vrl] [de:human papillomavirus type 23 11 protein gene, partial cds.] [le:<1]
							[re:
4183578_c1_25	2040	4643	1158	385	1581	1.70E−162	[ln:spu09239] [ac:u09239] [pn:possible polysaccharide transport protein] [gn:cps19fj]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae type 19f
							capsular polysaccharidebiosynthesis operon, (cps19fabcdefghijklmno) genes complete
4188762_c3_51	2041	4644	984	327	1076	5.50E−109	[ac:p54321] [gn:pyrda] [or: lactococcus lactis ] [sr:,subspcremoris: streptococcus
							cremoris] [ec:1.3.3.1] [de:(dhodehase a) (dhoda)] [sp:p54321] [db:swissprot]
4191902_c2_14	2042	4645	264	87	428	2.00E−39	[ac:p10564] [gn:hexa] [or: streptococcus pneumoniae ] [de:dna mismatch repair protein
							hexa] [sp:p10564] [db:swissprot]
4194052_c2_107	2043	4646	240	79	131	7.60E−09	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
4199013_f3_14	2044	4647	279	92	246	2.00E−20	[ac:f69806] [pn:rna methyltransferase homolog yfjo] [gn:yfjo] [or: bacillus subtilis ]
							[db:pir]
422768_f3_28	2045	4648	1884	627	1883	1.70E−194	[ac:p14951] [gn:uvrc] [or: bacillus subtilis ] [de:excinuclease abc subunit c] [sp:p14951]
							[db:swissprot]
429526_c2_111	2046	4649	498	165	64	0.2	[ac:p45649] [or: coxiella burnetii ] [de:hypothetical 9.9 kd protein in rnpa 3′region]
							[sp:p45649] [db:swissprot]
429693_f2_24	2047	4650	1368	455	947	2.60E−95	[ac:b69618] [pn:dna polymerase iii (gamma and tau subunits) dnax] [gn:dnax]
							[or: bacillus subtilis ] [db:pir]
4297653_c1_11	2048	4651	213	70	50	0.42	[ln:af014479] [ac:af014479] [pn:mal5elp28] [gn:5el] [or:african swine fever virus]
							[db:genpept-vrl] [de:african swine fever virus ikb-like protein mal5elp28 (5el)
							gene, complete cds.] [nt:ikb-like protein; encodes four ankyrin motifs] [le:1] [re:720]
							[di:d
4328392_f1_4	2049	4652	348	115	194	1.60E−15	[ac:a69785] [pn:cellobiose phosphotransferase system enzym homolog ydhm]
							[gn:ydhm] [or: bacillus subtilis ] [db:pir]
4328583_c2_24	2050	4653	714	237	133	4.40E−07	[ac:p50389] [gn:mtap] [or: sulfolobus solfataricus ] [ec:2.4.2.28] [de:phosphorylase)]
							[sp:p50389] [db:swissprot]
4328963_f2_4	2051	4654	555	184	423	8.70E−40	[ac:p54570] [gn:yqkg] [or: bacillus subtilis ] [de:hypothetical 21.0 kd protein in glnq-
							ansr intergenic region] [sp:p54570] [db:swissprot]
4329093_c3_31	2052	4655	246	81	122	1.10E−07	[ac:c64146] [pn:hypothetical protein hi0259] [or: haemophilus influenzae ] [db:pir]
4329842_c2_69	2053	4656	999	332	821	5.80E−82	[ac:g69830] [pn:lipoate-protein ligase homolog yhfj] [gn:yhfj] [or: bacillus subtilis ]
							[db:pir]
4331250_c1_13	2054	4657	213	70	61	0.18	[ac:s06427] [pn:phospholipid transfer protein homolog:amylase/proteinase inhibitor
							homolog] [cl:phospholipid transfer protein] [or: oryza sativa ] [sr:, rice] [db:pir]
4331713_f1_1	2055	4658	1047	348	1020	4.80E−103	[ac:g64507] [pn:hypothetical protein mj1665] [or: methanococcus jannaschii ] [db:pir]
							[mp:rev1648556-1647180]
4332000_f3_15	2056	4659	477	158	498	9.80E−48	[ac:p12044] [gn:pure] [or: bacillus subtilis ] [ec:4.1.1.21] [de:(ec 4.1.1.21) (air
							carboxylase) (airc)] [sp:p12044] [db:swissprot]
4333393_c3_55	2057	4660	561	186	194	1.60E−15	[ac:p05332] [gn:p20] [or: bacillus licheniformis ] [de:hypothetical p20 protein]
							[sp:p05332] [db:swissprot]
4334453_c1_21	2058	4661	1455	484	2231	2.20E−231	[ln:af030373] [ac:af030373] [pn:putative regulatory protein] [gn:cpsa] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae strain sp-264 alpha, 1-6-
							glucosidase(dexb) gene, partial cds; putative regulatory protein (cpsa) andcpsb (cp
4336515_c3_68	2059	4662	768	255	1225	9.00E−125	[ln:spdnaarg] [ac:af000658] [pn:spspoj] [gn:spspoj] [fn:unknown] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae r801 trna-arg gene, partial
							sequence, andputative serine protease (sphtra), spspoj (spspoj), initiatorprotein (spd
4336687_c3_16	2060	4663	825	274	1389	3.80E−142	[ln:spu16156] [ac:u16156:m17362:m58706] [pn:bifunctional adolase-
							pyrophosphokinase] [gn:suld] [fn: folate biosynthesis] [or: streptococcus pneunioniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae dihydropteroate synthase
							(sula),dihydrofolate synthetase (s
4338380_f3_4	2061	4664	216	71	132	6.00E−09	[ln:cet04f8] [ac:z66565] [pn:t04f8.8] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid t04f8, complete sequence.] [nt:cdna est yk121f1.5
							comes from this gene] [le:34969] [re:35259] [di:direct]
4339405_c2_25	2062	4665	285	94	79	0.027	[ac:p37349:p76013] [gn:ycgc] [or: escherichia coli ] [de:hypothetical 51.6 kd protein in
							trea-pth intergenic region] [sp:p37349:p76013] [db:swissprot]
4339808_c3_34	2063	4666	1017	338	709	4.30E−70	[ac:p46317] [gn:celb] [or: bacillus subtilis ] [de:permease iic component)
							(phosphotransferase enzyme ii, c component)] [sp:p46317] [db:swissprot]
4344637_f2_22	2064	4667	723	240	74	0.2	[ac:q58589] [gn:mj1189] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj1189] [sp:q58589] [db:swissprot]
4345887_f3_24	2065	4668	516	171	364	1.60E−33	[ac:p37872] [gn:ybxb] [or: bacillus subtilis ] [de:(orf23)] [sp:p37872] [db:swissprot]
4350068_c3_36	2066	4669	1422	473	1221	2.40E−124	[ac:p11175] [gn:lacg] [or: staphylococcus aureus ] [ec:3.2.1.85] [de:galactohydrolase)
							(pgalase) (p-beta-gal) (pbg)] [sp:p11175] [db:swissprot]
4351462_f2_3	2067	4670	192	63	65	0.15	[ac:p31970] [gn:gltx] [or:synechococcus sp] [sr:pcc 7002, agmenellum quadruplicatum ]
							[ec:6.1.1.17] [de:(glurs) (fragment)] [sp:p31970] [db:swissprot]
4352137_f1_9	2068	4671	489	162	781	1.00E−77	[ln:spdnaarg] [ac:af000658] [fn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: streptococcus pneumoniae r801 trna-arg gene, partial sequence, andputative
							serine protease (sphtra), spspoj (spspoj), initiatorprotein (spdnaa) and beta subunit of
4353212_f3_2	2069	4672	864	287	173	4.30E−13	[ac:p08511] [gn:sh] [or: drosophila melanogaster ] [sr:,fruit fly] [de:potassium channel
							protein, late population (shaker-beta)] [sp:p08511] [db:swissprot]
4354840_f3_18	2070	4673	891	296	75	0.038	[ac:s44477] [pn:nadh dehydrogenase (ubiquinone), chain 41] [gn:nd41] [cl:nadh
							dehydrogenase (ubiquinone) chain 41] [or: mitochondrion hansenula wingei ] [ec:1.6.5.3]
							[db:pir]
4355192_c2_8	2071	4674	438	145	287	2.30E−25	[ac:p44202] [gn:hi1454] [or: haemophilus influenzae ] [de:hypothetical cytochrome c-
							type biogenesis protein hi1454] [sp:p44202] [db:swissprot]
4376643_f1_4	2072	4675	1341	446	416	7.70E−72	[ac:s43914] [pn:hypothetical protein 1] [or: bacillus stearothermophilus ] [db:pir]
4380093_f1_8	2073	4676	216	71	64	0.092	[ln:celc30e1] [ac:af026204] [gn:c30e1.1] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c30e1.]
							[le:13826:14163] [re:13931:14314] [di:directjoin]
4380093_f2_15	2074	4677	216	71	64	0.092	[ln:celc30e1] [ac:af026204] [gn:c30e1.1] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c30e1.]
							[le:13826:14163] [re:13931:14314] [di:directjoin]
4391013_c2_43	2075	4678	360	120	81	0.019	[ac:s75406] [pn:hypothetical protein c04040] [or: sulfolobus solfataricus ] [db:pir]
4392183_f2_25	2076	4679	351	116	74	0.1	[ln:ehy14328] [ac:y14328] [pn:3e1 protein] [or: entamoeba histolytica ] [db:genpept-inv]
							[de: entamoeba histolytica mrna for 3e1 protein,] [le:32] [re:418] [di:direct]
4392338_c3_8	2077	4680	1500	499	1694	1.80E−174	[ac:p37477] [gn:lyss] [or: bacillus subtilis ] [ec:6.1.1.6] [de:lysyl-trna synthetase, (lysine-
							trna ligase) (lysrs)] [sp:p37477] [db:swissprot]
4395178_c3_19	2078	4681	288	95	71	0.11	[ac:p33502] [gn:nd1] [or: anopheles quadrimaculatus ] [sr.,mosquito] [ec:1.6.5.3]
							[de:nadh-ubiquinone oxidoreductase chain 1,] [sp:p33502] [db:swissprot]
4407838_f2_29	2079	4682	594	197	350	4.70E−32	[ac:b44070:s27552] [pn:phosphotransferase system enzyme ii, asc] [or: escherichia coli ]
							[ec:2.7.1.69] [db:pir]
4413341_f1_3	2080	4683	225	74	113	1.70E−06	[ac:p44068] [gn:hi0882] [or: haemophilus influenzae ] [de:hypothetical protein hi0882]
							[sp:p44068] [db:swissprot]
4414713_c1_81	2081	4684	549	182	154	2.80E−11	[ac:f69876] [pn:conserved hypothetical protein ylmf] [gn:ylmf] [or: bacillus subtilis ]
							[db:pir]
4414831_c1_32	2082	4685	192	63	46	0.43	[ac:s50856] [pn:whn protein] [cl:unassigned fork head proteins:fork head dna-binding
							domain homology] [or: rattus norvegicus ] [sr:, norway rat] [db:pir]
4422075_f1_1	2083	4686	1083	360	1238	3.80E−126	[ln:llu74322] [ac:u74322] [pn:6-phosphogluconate dehydrogenase] [or: lactococcus
							lactis ] [db:genpept-bct] [ec:1.1.1.44] [de: lactococcus lactis 6-phosphogluconate
							dehydrogenase gene, completecds, and potassium transporter homolog gene, partial
							cds.] [le:898
4422963_c3_58	2084	4687	342	113	234	9.30E−20	[ac:p45677] [gn:peb1c] [or: campylobacter jejuni ] [de:probable abc transporter atp-
							binding protein peb1c] [sp:p45677] [db:swissprot]
4424050_c1_78	2085	4688	249	82	76	0.22	[ln:cer10e8] [ac:z81576] [pn:r10e8.e] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid r10e8, complete sequence.] [nt:protein predicted
							using genefinder; preliminary] [le:251:2228:2985:4079:4338]
							[re:657:2930:3253:4295:4757]
444050_c1_27	2086	4689	381	126	378	5.10E−35	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
445312_c1_39	2087	4690	210	69	60	0.042	[ln:spac17a2] [ac:z99292] [pn:hypothetical protein] [gn:spac17a2.11]
							[or: schizosaccharomyces pombe ] [sr:fission yeast] [db:genpept-pln] [de: s.pombe
							chromosome i cosmid c17a2.] [nt:author-given protein sequence is in conflict with]
							[le:26511] [re:27413] [d
4453568_f2_34	2088	4691	627	208	148	1.00E−09	[ln:d90818] [ac:d90818:ab001340] [gn:yqed] [or: escherichia coli ] [sr: escherichia coli
							(strain:k12) dna, clone_lib:kohara lambda minise] [db:genpept-bct] [de: e.coli genomic
							dna, kohara clone #327(39.2-39.5 min.).] [nt:orf_id:o327#7; similar to [swissprot a
4454713_f2_17	2089	4692	639	212	337	1.10E−30	[ac:p50846] [gn:kdga] [or: bacillus subtilis ] [ec:4.1.3.16:4.1.2.14] [de:(2-keto-3-deoxy-6-
							phosphogluconate aldolase) (kdpg-aldolase)] [sp:p50846] [db:swissprot]
446900_f2_22	2090	4693	1167	388	685	1.50E−67	[ac:39301] [gn:sgat] [or: escherichia coli ] [de:sgat protein] [sp:p39301] [db:swissprot]
447177_c3_51	2091	4694	633	210	446	3.20E−42	[ac:p39788] [gn:nth:joob] [or: bacillus subtilis ] [ec:4.2.99.18] [de:apyrimidinic site)
							lyase)] [sp:39788] [db:swissprot]
4476693_c3_16	2092	4695	354	117	195	1.30E−15	[ac:p26942] [gn:ysxb] [or: bacillus subtilis ] [de:hypothetical 12.3 kd protein in rplu-
							rpma intergenic region (orf x)] [sp:p26942] [db:swissprot]
4484812_f1_10	2093	4696	372	123	59	0.35	[ac:p54052] [gn:mj0595] [or: methanococcus jannaschii ] [de:50s ribosomal protein 1x]
							[sp:p54052] [db:swissprot]
4486328_c1_10	2094	4697	216	71	117	2.30E−07	[ac:b69453] [pn:repressor protein homolog] [or: archaeoglobus fulgidus ] [db:pir]
4492143_c1_73	2095	4698	1623	540	1528	7.00E−157	[ac:f69884] [pn:conserved hypothetical protein ymda] [gn:ymda] [or: bacillus subtilis ]
							[db:pir]
4492188_f2_18	2096	4699	1257	418	1046	8.40E−106	[ln:szu50357] [ac:u50357] [pn:zoocin a immunity factor] [gn:zif] [fn:encodes producer
							cell immunity for the] [or: streptococcus zooepidemicus ] [db:genpept-bct]
							[de: streptococcus zooepidemicus zoocin a immunity factor (zif) andzoocin a
							endopeptidase (zooa)
4492193_f2_35	2097	4700	1005	334	678	8.30E−67	[ln:spcinrec] [ac:z34303] [pn:hypothetical protein] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae cin operon encoding the cina, reca,
							dinf,lyta genes, and downstream sequences.] [nt:orf1] [le:7592] [re:8176] [di:direct]
4492307_f3_36	2098	4701	1095	364	893	1.40E−89	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
4492838_c2_60	2099	4702	1923	640	2092	1.20E−216	[ln:11u80409] [ac:u80409] [pn:glucose inhibited division protein homolog gida]
							[gn:gida] [or: lactococcus lactis cremoris ] [db:genpept-bct] [de: lactococcus lactis
							cremoris glucose inhibited division proteinhomolog gida (gida) gene, partial cds.]
							[nt:simila
4494087_f3_44	2100	4703	912	303	210	7.20E−16	[ac:p06613:p76834] [gn:cysb] [or: escherichia coli ] [de:cys regulon transcriptional
							activator] [sp:p06613:p76834] [db:swissprot]
4495287_f2_12	2101	4704	216	71	62	0.15	[ac:p56026] [gn:rpss:hp1315] [or: helicobacter pylori ] [sr:, campylobacter pylori ] [de:30s
							ribosomal protein s19] [sp:p56026] [db:swissprot]
4501501_c1_43	2102	4705	1449	482	479	1.80E−52	[ac:s14959] [pn:proline-rich protein] [or: triticum aestivum ] [sr:, common wheat]
							[db:pir]
4534665_f1_4	2103	4706	671	224	647	1.60E−63	[ln:d78182] [ac:d78182] [gn:orf2] [or: streptococcus mutans ] [sr: streptococcus mutans
							(strain:xc) dna] [db:genpept-bct] [de: streptococcus mutans dna for dtdp-rhamnose
							synthesis pathway,complete cds.] [le:335] [re:1030] [di:direct]
4554637_c2_17	2104	4707	2190	730	834	2.40E−83	[ac:p38050] [gn:pbpf:pona] [or: bacillus subtilis ] [de:penicillin-binding protein 1a (pbp-
							1a)] [sp:p38050] [db:swissprot]
4558567_f3_26	2105	4708	456	151	216	7.50E−18	[ac:p17893] [gn:ahrc] [or: bacillus subtilis ] [de:arginine hydroximate resistance protein]
							[sp:p17893] [db:swissprot]
4562838_c1_71	2106	4709	1107	368	343	6.80E−47	[ac:b69875] [pn:conserved hypothetical protein ylbm] [gn:ylbm] [or: bacillus subtilis ]
							[db:pir]
4564717_f3_35	2107	4710	996	331	407	4.30E−38	[ln:spcps14e] [ac:x85787] [pn:ss-1,4-galactosyltransferase] [gn:cps14j] [fn:capsular
							polysaccharide synthesis] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae cps14 locus.] [le:9524] [re:10480] [di:direct]
4572755_f1_1	2108	4711	243	80	108	2.10E−06	[ln:cet04f8] [ac:z66565] [pn:t04f8.8] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid t04f8, complete sequence.] [nt:cdna est yk121f1.5
							comes from this gene] [le:34969] [re:35259] [di:direct]
4574037_f2_3	2109	4712	1218	405	1131	8.20E−115	[ac:p23034] [or:bacillus sp] [sr:ym-2,] [ec:2.6.1.1] [de:aspartate aminotransferase,
							(transaminase a) (aspat)] [sp:p23034] [db:swissprot]
4578400_f3_33	2110	4713	408	135	61	0.72	[ac:a35666] [pn:transcriptional activator krox-24 88k] [or: mus musculus ] [sr:, house
							mouse] [db:pir]
4586068_f2_13	2111	4714	216	71	156	1.70E−11	[ac:p12873] [gn:rpmc] [or: bacillus subtilis ] [de:50s ribosomal protein 129] [sp:p12873]
							[db:swissprot]
46875_f3_30	2112	4715	234	77	64	0.092	[ln:ae001171] [ac:ae001171:ae000783] [pn: b. burgdorferi predicted coding region
							bb0711] [gn:bb0711] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-
							bct] [de: borrelia burgdorferi (section 57 of 70) of the complete genome.] [nt:hypothetic
4687750_f3_29	2113	4716	183	60	53	0.76	[ln:yscdmcla] [ac:m87549] [gn:pdh-alpha1] [or: saccharomyces cerevisiae ]
							[sr: saccharomyces cerevisiae (strain grf88) (library:m. d. rose (ros] [db:genpept-pln]
							[de: saccharomyces cerevisiae yeast homolog of reca (dmc1) gene, partialcds.] [le:1]
							[re:262] [d
4687762_f3_28	2114	4717	651	216	713	1.60E−70	[ac:q02141] [gn:leua] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[cc:4.1.3.12] [de:synthase) (alpha-ipm synthetase)] [sp:q02141] [db:swissprot]
4688812_c3_88	2115	4718	222	73	82	0.04	[ln:hssa1] [ac:z75330] [pn:nuclear protein sa-1] [or: homo sapiens ] [sr:human]
							[db:genpept-pri2] [de: h.sapiens mrna for nuclear protein sa-1.] [le:401] [re:4177]
							[di:direct]
4692251_f1_9	2116	4719	777	258	910	2.20E−91	[ac:p42360] [or: streptococcus gordonii challis ] [de:(orf1)] [sp:p42360] [db:swissprot]
4692556_c3_203	2117	4720	408	135	56	0.7	[ac:p22597] [or:equine herpesvirus type 4] [sr:1942,ehv-4:equine herpesvirus type 1
							subtype 2] [de:membrane protein u143 homolog (orf1) (fragment)] [sp:p22597]
							[db:swissprot]
4695327_f3_27	2118	4721	678	225	294	4.10E−26	[ac:p05194] [gn:arod] [or: escherichia coli ] [ec:4.2.1.10] [de:3-dehydroquinate
							dehydratase, (3-dehydroquinase)] [sp:p05194] [db:swissprot]
470157_f2_18	2119	4722	675	224	920	1.90E−92	[ac:p30299] [gn:ptsi] [or: streptococcus salivarius ] [ec:2.7.3.9] [de:(phosphotransferase
							system, enzyme i)] [sp:p30299] [db:swissprot]
4704390_c3_53	2120	4723	858	285	87	0.043	[ac:jc4004] [pn:carbomycin 4-o-methyltransferase,:midecamycin 4-o-methyltransferase
							homolog] [or:streptomyces sp.] [ec:2.1.1.—] [db:pir]
4704678_c2_69	2121	4724	195	64	57	0.044	[ln:cee03h4] [ac:z81492] [pn:e03h4.13] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid e03h4, complete sequence.] [nt:similarity to zinc
							finger proteins] [le:38799:38897:39024] [re:38852:38965:39443] [di:complementjoin]
4718750_c1_51	2122	4725	2460	819	399	2.50E−56	[ac:p54394] [gn:ding] [or: bacillus subtilis ] [de:probable atp-dependent helicase ding
							homolog] [sp:p54394] [db:swissprot]
47192_f1_1	2123	4726	648	215	71	0.65	[ln:pbu42580] [ac:u42580:u17055:u32570] [gn:a426r] [or: paramecium bursaria
							chlorella virus 1] [db:genpept-vrl] [de: paramecium bursaria chlorella virus 1, complete
							genome.] [le:207339] [re:207683] [di:direct]
4719712_f3_27	2124	4727	246	81	323	3.40E−29	[ln:soorfs] [ac:z79691] [gn:yorfe] [fn:putative transcription regulator] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: s.pneumoniae yorf[a,b,c,d,e], ftsl, pbpx and regr
							genes.] [le:2388] [re:2582] [di:complement]
4721017_f1_1	2125	4728	2256	751	1938	2.50E−200	[ac:a47331:s56464:a65236] [pn:ribonucleoside-triphosphate reductase,, oxygen-
							sensitive:anaerobic ribonucleotide reductase] [gn:nrdd] [cl:oxygen-sensitive
							ribonucleoside-triphosphate reductase:oxygen-sensitive ribonucleoside-triphosphate
							reductase carboxyl
472563_c1_15	2126	4729	186	61	79	0.015	[ac:s67482:s52150] [pn:serine o-acetyltransferase,, cytosolic:serine
							acetyltransferase:serine acetyltransferase] [cl:serine acetyltransferase] [or: arabidopsis
							thaliana ] [sr:,mouse-ear cress] [ec:2.3.1.30] [db:pir]
4726436_c3_66	2127	4730	420	139	89	0.0076	[ac:p29834] [gn:grp 0.9:grp-1] [or: oryza sativa ] [sr:,rice] [de:glycine-rich cell wall
							structural protein 2 precursor] [sp:p29834] [db:swissprot]
4726688_f2_2	2128	4731	1320	439	1530	4.30E−157	[ac:p20964] [gn:obg] [or: bacillus subtilis ] [de:spo0b-associated gtp-binding protein]
							[sp:p20964] [db:swissprot]
472806_c1_37	2129	4732	225	74	198	6.10E−16	[ln:spnana] [de:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le: 93] [re:495] [di:direct]
4728161_c2_50	2130	4733	516	171	309	1.10E−27	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
4729017_c3_113	2131	4734	273	90	131	7.60E−09	[ac:g69876] [pn:conserved hypothetical protein ylmg] [gn:ylmg] [or: bacillus subtilis ]
							[db:pir]
4745377_c3_71	2132	4735	282	93	275	4.20E−24	[ac:p37557] [gn:yabo] [or: bacillus subtilis ] [de:hypothetical 9.7 kd protein in mfd-divic
							intergenic region] [sp:p37557] [db:swissprot]
475067_c2_36	2133	4736	558	185	322	4.40E−29	[ln:lmu40604] [ac:u40604] [fn:unknown] [or: listeria monocytogenes ] [db:genpept-bct]
							[de: listeria monocytogenes clpc atpase (mec)gene, complete cds.] [nt:orf1; putative 17
							kda protein] [le:207] [re:665] [di:direct]
476550_f3_7	2134	4737	402	133	76	0.15	[ac:p44222] [gn:hi1498] [or: haemophilus influenzae ] [de:hypothetical protein hi1498]
							[sp:p44222] [db:swissprot]
4769003_c2_14	2135	4738	435	144	456	2.80E−43	[ac:q08352] [gn:ald:spovn] [or: bacillus subtilis ] [ec:1.4.1.1] [de:alanine dehydrogenase,
							(stage v sporulation protein n)] [sp:q08352] [db:swissprot]
4770087_c1_24	2136	4739	594	197	726	6.80E−72	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir]
4770087_c1_96	2137	4740	411	136	391	2.10E−36	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir[
4770087_c2_73	2138	4741	594	197	730	2.60E−72	[ac:a33595:a30868] [pn:probable transposase (insertion sequence is861)] [gn:is861-orf
							2] [or: streptococcus agalactiae ] [db:pir]
4772507_f3_29	2139	4742	1101	366	1442	9.10E−148	[ln:silct] [ac:y07622] [pn:lactate oxidase] [gn:lcto] [fn:tactate utilisation]
							[or: streptococcus iniae ] [db:genpept-bct] [de: s. iniae lctp & lcto genes and orf1.]
							[le:2763] [re:3974] [di:direct]
4775028_f1_11	2140	4743	228	75	122	6.90E−08	[ac:p53071] [gn:ygl235w] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 19.3 kd protein in hap2-ade5,6 intergenic region] [sp:p53071]
							[db:swissprot]
47760_c2_18	2141	4744	411	136	74	0.24	[ac:b70008] [pn:hypothetical protein yuei] [gn:yuei] [or: bacillus subtilis ] [db:pir]
4776578_c2_183	2142	4745	774	257	85	0.0024	[ac:p20327] [gn:5.3] [or:bacteriophage t3] [de:hypothetical gene 5.3 protein]
							[sp:p20327] [db:swissprot]
4781312_f3_30	2143	4746	195	64	55	0.58	[ac:p10132] [gn:rpss] [or: mycoplasma capricolum ] [de:30s ribosomal protein s19]
							[sp:p10132] [db:swissprot]
4784401_c3_47	2144	4747	2679	892	4412	0	[ac:p13252] [gn:pola] [or: streptococcus pneumoniae ] [ec:2.7.7.7] [de:dna polymerase i,
							(pol i)] [sp:p13252] [db:swissprot]
4788452_f3_5	2145	4748	276	91	69	0.028	[ln:meampa] [ac:m12668] [pn:unknown protein] [or:measles virus] [sr:measles virus
							cdna to genomic rna] [db:genpept-vrl] [de:measles virus genes encoding matrix
							proteins, complete cds.] [nt:mx1 orf; putative] [le:1070] [re:1447] [di:direct]
4792202_c1_52	2146	4749	1170	389	129	5.70E−09	[ac:p07908] [gn:dnab] [or: bacillus subtilis ] [de:replication initiation and membrane
							attachment protein] [sp:p07908] [db:swissprot]
4798588_f3_46	2147	4750	252	83	296	2.50E−26	[ln:spz82002] [ac:z82002] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpb and pcpc genes.] [nt:similar to the prepropeptide of the
							glutamic] [le:238] [re:432] [di:direct]
4800700_c1_23	2148	4751	330	109	224	1.10E−18	[ac:a69742] [pn:conserved hypothetical protein yaza] [gn:yaza] [or: bacillus subtilis ]
							[db:pir]
4804629_c2_6	2149	4752	995	331	1652	5.10E−170	[ln:spr61dh] [ac:aj000336] [pn:1-lactate dehydrogenase] [gn:ldh] [fn:conversion of
							pyruvate to lactate] [or: streptococcus pneumoniae ] [db:genpept-bct] [ec:1.1.1.27]
							[de: streptococcus pneumoniae ldh gene.] [le:187] [re:1173] [di:direct]
4804785_c1_57	2150	4753	225	74	71	0.018	[ln:bsu80627] [ac:u80627] [pn:cytochrome b] [gn:cytb] [or: mitochondrion bothriechis
							schlegelii ] [sr: bothriechis schlegelii ] [db:genpept-vrt] [de: bothriechis schlegelii
							cylochrome b (cytb) gene, mitochondrial geneencoding mitochondrial protein, partial
							cds
4804785_c2_37	2151	4754	396	131	55	0.77	[ac:h69859] [pn:hypothetical protein ykol] [gn:ykol] [or: bacillus subtilis ] [db:pir]
4806506_c2_93	2152	4755	633	210	491	5.40E−47	[ac:p54455] [gn:yqej] [or: bacillus subtilis ] [de:hypothetical 22.2 kd protein in arod-
							comer intergenic region] [sp:p54455] [db:swissprot]
4806576_f2_22	2153	4756	591	196	76	0.97	[ac:p40214] [gn:ymr144w:ym19375.13] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 38.6 kd protein in rps16a-tif34 intergenic region] [sp:p40214]
							[db:swissprot]
4806592_c1_43	2154	4757	366	121	169	8.80E−13	[ac:f64819] [pn:hypothetical protein b0822] [or: escherichia coli ] [db:pir]
4808317_c1_80	2155	4758	207	68	75	0.043	[ac:c42756] [pn:hypothetical protein f-327] [or: mamestra brassicae nuclear
							polyhedrosis virus:mbmnpv] [db:pir]
4820807_c1_23	2156	4759	219	72	60	0.79	[ac:d69835] [pn:alcohol dehydrogenase homolog yhxc] [gn:yhxc] [or: bacillus subtilis ]
							[db:pir]
484437_c1_7	2157	4760	2505	834	349	2.30E−51	[ac:p38050] [gn:pbpf:pona] [or: bacillus subtilis ] [de:penicillin-binding protein 1a (pbp-
							1a)] [sp:p38050] [db:swissprot]
48515520_c3_46	2158	4761	210	69	165	1.90E−12	[ln:celzk354] [ac:u88172] [gn:zk354.7] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid zk354.]
							[le:7269:8132] [re:7868:8206] [di:complementjoin]
4860077_f2_22	2159	4762	579	192	54	0.98	[ac:p50152] [gn:gngt11] [or: homo sapiens ] [sr:,human] [de:guanine nucleotide-binding
							protein g(i)/g(s)/g(o) gamma-11 subunit] [sp:p50152] [db:swissprot]
4860633_f3_13	2160	4763	654	217	193	2.10E−15	[ln:af040570] [ac:af040570] [pn:phosphatase] [gn:rifm] [or: amycolatopsis mediterranei ]
							[db:genpept-bct] [de: amycolatopsis mediterranei rifamycin biosynthetic gene cluster.]
							[nt:rifm; similar to phosphoglycolate phosphatases] [le:60804] [re:61502] [di:dire
4860767_c2_26	2161	4764	966	321	128	0.00016	[ac:s61441:s27982] [pn:surface-associated protein csha precursor] [gn:csha]
							[or: streptococcus gordonii ] [db:pir]
4861068_f3_32	2162	4765	651	216	713	1.60E−70	[ac:p27143] [gn:adk] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:2.7.4.3] [de:adenylate kinase, (atp-amp transphosphorylase)] [sp:p27143]
[db:swissprot]
4866012_f1_9	2163	4766	1992	663	392	6.70E−36	[ac:q02425] [or: streptococcus mutans ] [de:hypothetical protein in mtlf 5′region (orfx)
							(fragment)] [sp:q02425] [db:swissprot]
4870892_f1_7	2164	4767	198	65	49	0.068	[ac:c64612] [pn:2-hydroxy-6-oxohepta-2,4-dienoate hydrolase] [or: helicobacter pylori ]
							[db:pir]
4875002_f3_28	2165	4768	336	111	318	1.20E−28	[ln:sgu81957] [ac:u81957] [pn:comyc] [gn:comyc] [or: streptococcus gordonii ]
							[db:genpept-bct] [de: streptococcus gordonii rna polymerase beta' subunit (rpoc),putative
							dna binding protein, putative abc transporter subunitcomya (comya), putative abc
							transport
4875088_f3_27	2166	4769	813	270	374	1.40E−34	[ac:e64128] [pn:lic-1 protein d] [gn:licd] [or: haemophilus influenzae ] [db:pir]
4875300_c3_93	2167	4770	192	63	183	2.10E−13	[ln:spspsa2] [ac:aj002054] [pn:spsa protein] [fn:iga binding protein] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae siga binding.] [le:1]
							[re:1620] [di:direct]
4875318_c1_35	2168	4771	4590	1529	342	7.50E−48	[ac:p16271] [gn:prtp] [or: lactococcus lactis ] [sr:,subspcremoris: streptococcus cremoris ]
							[ec:3.4.21.—] [de:proteinase)] [sp:p16271] [db:swissprot]
4875318_c2_45	2169	4772	1440	479	1744	9.10E−180	[ac:d69813] [pn:abc transporter (atp-binding protein) homolog yfmm] [gn:yfmm]
							[or: bacilius subtilis ] [db:pir]
4875643_c2_61	2170	4773	1287	428	265	5.90E−26	[ac:d69740] [pn:cell-cycle protein homolog yaca] [gn:yaca] [or: bacillus subtilis ]
4876510_c1_55	2171	4774	387	128	94	0.00025	[ac:q91085] [or: meleagris gallopavo ] [sr:,common turkey] [de:(fragment)] [sp:q91085]
							[db:swissprot]
4877257_f3_25	2172	4775	327	108	274	5.10E−23	[ac:p80868:p70980] [gn:fusa:fus] [or: bacillus subtilis ] [de:elongation factor g (ef-g]
							(vegetative protein 19) (veg19)] [sp:p80868:p70980] [db:swissprot]
4877318_f2_11	2173	4776	666	221	867	7.80E−87	[ln:bsu43929] [ac:u43929] [pn:s3] [gn:rpsc] [or: bacilius subtilis ] [db:genpept-bct]
							[de: bacillus subtilis ribosomal protein gene cluster, rpsj, rplc, rpld,rplw, rplb,rpss,rpiv
							and rpsc genes, complete cds, and rplp gene,partial cds.] [nt:ribosomal prote
4878463_c1_14	2174	4777	282	93	64	0.68	[ln:mbod2dcpil] [ac:132967] [pn:pilin] [or: moraxella bovis ] [sr: moraxella bovis (strain
							d2d serogroup c) dna] [db:genpept-bct] [de: moraxella bovis (strain d2d serogroup c)
							pilin gene, partial cds.] [nt:putative] [le:67] [re:498] [di:direct]
4878780_f1_8	2175	4778	270	89	68	0.38	[ac:i47141:s55315] [pn:gastric mucin (clone pgm-2a)] [or: sus scrofa domestica ] [sr:,
							domestic pig] [db:pir]
4879625_f3_18	2176	4779	1128	375	1832	4.30E−189	[ln:spu43526] [ac:u43526] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae neuraminidase b (nanb) gene, complete cds,and
							neuraminidase (nana) gene, partial cds.] [nt:orf-5] [le:7207] [re:
4879663_f2_7	2177	4780	1326	441	84	0.6	[ac:p24755] [gn:ompa] [or: serratia odorifora ] [de:outer membrane protein a (outer
							membrane protein ii) (fragment)] [sp:p24755] [db:swissprot]
4881302_f3_43	2178	4781	900	299	482	4.90E−46	[ac:g64876] [pn:hypothetical protein b1284] [or: escherichia coli ] [db:pir]
4881306_f1_1	2179	4782	240	79	66	0.17	[ac:q11075] [gn:b0403.1] [or: caenorhabditis elegans ] [de:hypothetical 23.2 kd protein
							b0403.1 in chromosome x] [sp:q11075] [db:swissprot]
4881531_f1_20	2180	4783	912	303	710	3.40E−70	[ac:p75089] [gn:fba:tsr] [or: mycoplasma pneumoniae ] [ec:4.1.2.13] [de:fructose-
							bisphosphate aldolase,] [sp:p75089] [db:swissprot]
48820624_c2_40	2181	4784	276	92	128	1.80E−07	[ac:s19933] [pn:glycine-rich protein atgrp-7] [or: arabidopsis thaliana ] [sr:, mouse-ear
							cress] [db:pir]
4882312_f1_5	2182	4785	888	295	684	1.90E−67	[ac:g69726] [pn:trna pseudouridine 5s synthase trub] [gn:trub] [or: bacillus subtilis ]
							[db:pir]
4882760_f3_28	2183	4786	273	90	387	5.70E−36	[ln:strcomaa] [ac:m36180:115190] [pn:transposase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (strain rx1) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae transposase, (coma and comb) and saicarsynthetase (purc) genes, complete
							cds.] [nt
48828003_f2_15	2184	4787	204	68	181	3.80E−14	[ln:celc34d4] [ac:u58755] [gn:c34d4.11] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid c34d4.]
							[le:13972:14090:14398] [re:14036:14143:14493] [di:complementjoin]
48828052_c1_36	2185	4788	327	108	156	1.70E−11	[ac:s49193] [pn:gcr 101 protein] [gn:anon-pen101] [or: drosophila melanogaster ]
48828100_f2_19	2186	4789	1002	333	813	4.10E−81	[ln:spz82002] [ac:z82002] [pn:pcpc] [gn:pcpc] [fn:unknown] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: s.pneumoniae pcpb and pcpc genes.] [nt:pcpc
							contains a choline binding domain] [le:1401] [re:2285] [di:direct]
48828124_c2_39	2187	4790	204	67	158	1.50E−10	[ac:p13816] [gn:garp] [or: plasmodium falciparum ] [sr:,isolate fc27/papua new guinea]
							[de:glutamic acid-rich protein precursor] [sp:p13816] [db:swissprot]
4882828_f3_22	2188	4791	1416	471	2452	8.60E−255	[ac:p11546] [gn:lacg] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:3.2.1.85] [de:galactohydrolase) (pgalase) (p-beta-gal) (pbg)] [sp:p11546]
							[db:swissprot]
4882937_f1_9	2189	4792	258	85	76	0.11	[ac:q60282] [gn:mjec123] [or: methanococcus jannaschii ] [de:hypothetical protein
							mjec123] [sp:q60282] [db:swissprot]
4882943_c3_55	2190	4793	237	79	69	0.31	[ac:g02522] [pn:sorting nexin 1] [gn:snx1] [cl:px domain homology] [or: homo sapiens ]
							[sr:, man] [db:pir] [mp:15q22-15q23]
4882962_f1_2	2191	4794	888	295	204	2.30E−21	[ac:q58487] [gn:mj1087] [or: methanococcus jannaschii ] [ec:2.7.1.36] [de:mevalonate
							kinase, (mk)] [sp:q58487] [db:swissprot]
4883418_c1_16	2192	4795	1092	363	656	1.80E−64	[ac:c69813] [pn:rna helicase homolog yfml] [gn:yfml] [or: bacillus subtilis ] [db:pir]
4884642_f3_65	2193	4796	660	219	359	5.30E−33	[ac:q47744] [gn:vanrb] [or: enterococcus faecalis ] [sr:, streptococcus faecalis ]
							[de:regulatory protein vanrb] [sp:q47744] [db:swissprot]
4884687_f2_7	2194	4797	528	175	250	1.90E−21	[ln:ehcopayz] [ac:z46807] [gn:orf u] [or: enterococcus hirae ] [db:genpept-bct]
							[de: e.hirae copa, copy and copz genes.] [le:646] [re:1185] [di:direct]
4885927_c3_77	2195	4798	777	258	540	3.50E−52	[ac:q06753] [gn:yaco] [or: bacillus subtilis ] [de:hypothetical rrna methylase in cyss
							3′region] [sp:q06753] [db:swissprot]
4886030_f2_83	2196	4799	333	110	91	0.0017	[ac:p31948] [or: homo sapiens ] [sr:,human] [de:transformation-sensitive protein ief ssp
							3521] [sp:p31948] [db:swissprot]
4886068_c1_52	2197	4800	621	206	704	1.50E−69	[ln:laclpagap] [ac:136907] [fn:unknown] [or: lactococcus lactis ] [sr: lactococcus lactis
							(individual_isolate lm0230, sub_specie] [db:genpept-bct] [de: lactococcus lactis atp-
							dependent protease (clpa) gene, 3′ end;complete orf156; glyceraldehyde-3-phosphate d
4886086_f1_5	2198	4801	552	183	551	2.40E−53	[ln:bacrgb] [ac:m57622:j05723] [pn:ribosomal protein 16] [gn:ribosomal protein 16]
							[or: bacillus stearothermophilus ] [sr: b.stearothermophilus dna] [db:genpept-bct]
							[de: b.stearothermophilus ribosomal protein 16 gene, complete cds.] [le:1] [re:537]
							[di:direc
4886087_f1_2	2199	4802	792	263	324	2.70E−29	[ac:p23553] [gn:xync] [or: caldocellum saccharolyticum ] [ec:3.1.—.—] [de:acetyl esterase,]
							[sp:p23553] [db:swissprot]
4891092_c1_148	2200	4803	366	121	75	0.47	[ac:q57978] [gn:mj0558] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj0558] [sp:q57978] [db:swissprot]
4895327_f3_47	2201	4804	294	97	226	6.10E−18	[ac:a41971:a60282:a33134] [pn:surface protein pspa precursor:pneumococcal surface
							protein a] [gn:pspa] [cl:cpl repeat homology] [or: streptococcus pneumoniae ] [db:pir]
4897188_c2_28	2202	4805	837	278	751	1.50E−74	[ln:11aj642] [ac:aj222642] [gn:purr] [fn:activator of purine biosynthetic genes]
							[or: lactococcus lactis ] [db:genpept-bct] [de: lactococcus lactis purr gene,.] [le:98]
							[re:913] [di:direct]
4898568_c2_44	2203	4806	1095	364	1013	2.60E−102	[ac:f69878] [pn:conserved hypothetical protein ylon] [gn:ylon] [or: bacillus subtilis ]
							[db:pir]
4899038_f2_15	2204	4807	219	72	66	0.057	[ln:pbu42580] [ac:u42580:u17055:u32570] [gn:a669r] [or: paramecium bursaria
							chlorella virus 1] [db:genpept-vrl] [de: paramecium bursaria chlorella virus 1, complete
							genome.] [nt:similar to chlorella virus cvk2 unknown orf,] [le:319062] [re:319313]
4899183_c1_154	2205	4808	714	237	254	7.10E−22	[ln:u88974] [ac:u88974] [pn:orf19] [or: streptococcus thermophilus ] [db:genpept-bct]
							[de: streptococcus thermophilus bacteriophage 01205 dna sequence.] [le:10397]
							[re:10864] [di:direct]
4899187_f1_13	2206	4809	978	325	567	4.80E−55	[ac:e69763] [pn:ferrichrome abc transporter (binding prote) homolog yclq] [gn:yclq]
							[or: bacillus subtilis ] [db:pir]
4899188_f1_17	2207	4810	660	219	487	1.40E−46	[ln:shgcpir] [ac:x86780] [pn:abc-transporter] [gn:orfx] [or: streptomyces hygroscopicus ]
							[db:genpept-bct] [de: s.hygroscopicus gene cluster for polyketide
							immunosuppressantrapamycin.] [le:3056] [re:3763] [di:complement]
4900260_f1_1	2208	4811	453	150	234	9.50E−19	[ac:p54745] [gn:hrsa] [or: escherichia coli ] [ec:2.7.1.69] [de:hrsa protein,] [sp:p54745]
							[db:swissprot]
4900262_f1_15	2209	4812	198	65	343	2.60E−31	[ac:p06653] [gn:lyta] [or: streptococcus pneumoniae ] [ec:3.5.1.28] [de:hydrolase]
							(mucopeptide aminohydrolase) (cell wall hydrolase)] [sp:p06653] [db:swissprot]
4900286_c2_104	2210	4813	516	171	264	6.20E−23	[ac:g69878] [pn:conserved hypothetical protein yloo] [gn:yloo] [or: bacillus subtilis ]
							[db:pir]
4900308_f3_59	2211	4814	192	63	59	0.28	[ac:s75091] [pn:hypothetical protein slr0270] [or:synechocystis sp.] [sr:pcc 6803, , pcc
							6803] [sr:pcc 6803, ] [db:pir]
4901517_f2_22	2212	4815	726	241	283	6.00E−25	[ac:q57424] [gn:hi0647] [or: haemophilus influenzae ] [de:hypothetical protein hi0647]
							[sp:q57424] [db:swissprot]
4901588_f1_4	2213	4816	1332	443	1344	2.20E−137	[ac:p44917] [gn:hi0883] [or: haemophilus influenzae ] [de:hypothetical protein hi0883]
							[sp:p44917] [db:swissprot]
49192_f1_3	2214	4817	948	315	661	5.30E−65	[ac:q04796] [gn:dapa] [or: bacillus subtilis ] [ec:4.2.1.52] [de:dihydrodipicolinate
							synthase, (dhdps)] [sp:q04796] [db:swissprot]
492341_c3_240	2215	4818	774	257	103	0.0015	[ac:p18015] [gn:cop] [or: clostridium perfringens ] [de:copy number protein (orf4)]
							[sp:p18015] [db:swissprot]
4937505_f1_12	2216	4819	225	74	72	0.23	[ac:s26427] [pn:structural protein, 70k] [or:phage i3] [db:pir]
4947130_f3_58	2217	4820	1329	442	1475	2.90E−151	[ln:spdnagcpo] [ac:y11463] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae dnag, rpod, cpoa genes and orf3 and orf5.] [nt:orf5]
							[le:3192] [re:
495276_f1_11	2218	4821	210	69	69	0.028	[ln:abrpab] [ac:x94765] [pn:dna-directed rna polymerase i] [gn:rpab] [or: agaricus
							bisporus ] [sr:cultivated mushroom] [db:genpept-pln] [ec:2.7.7.6] [de: a.bisporus rpab
							mrna for dna-directed polymerase 1.] [le:<1] [re:
4953201_f3_12	2219	4822	1137	378	658	1.10E−64	[ac:p42100] [gn:yxaa:s14a] [or: bacillus subtilis ] [de:hypothetical 39.4 kd protein in gntr-
							htpg intergenic region] [sp:p42100] [db:swissprot]
4953312_f3_3	2220	4823	1269	422	1114	5.20E−113	[ac:p19670:q03225] [gn:mura:murz] [or: bacillus subtilis ] [ec:2.5.1.7] [de:enolpyruvyl
							transferase) (ept)] [sp:p19670:q03225] [db:swissprot]
4954087_c2_26	2221	4824	819	272	782	7.90E−78	[ac:a70090] [pn:hypothetical protein yycj] [gn:yyci] [or: bacillus subtilis ] [db:pir]
4954713_f1_13	2222	4825	1176	391	1928	2.90E−199	[ac:p30758] [gn:reca] [or: streptococcus pneumoniae ] [de:reca protein] [sp:p30758]
							[db:swissprot]
4954837_f1_7	2223	4826	816	271	306	2.20E−27	[ac:q57233] [gn:thim:hi0415] [or: haemophilus influenzae ] [ec:2.7.1.50]
							[de:hydroxyethylthiazole kinase) (thz kinase) (th kinase)] [sp:q57233] [db:swissprot]
4960818_c2_86	2224	4827	738	245	608	2.20E−59	[ac:e69372] [pn:osmoprotection protein (prov) homolog] [or: archaeoglobus fulgidus ]
							[db:pir]
4960887_c1_13	2225	4828	363	120	80	0.23	[ac:c69324] [pn:polysaccharide biosynthesis protein homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
4961703_c3_26	2226	4829	894	297	295	3.20E−26	[ac:p49330] [gn:rgg] [or: streptococcus gordonii challis] [de:rgg protein] [sp:p49330]
							[db:swissprot]
4962756_f2_7	2227	4830	291	96	271	1.10E−23	[ac:d69979] [pn:conserved hypothetical protein yrrk] [gn:yrrk] [or: bacillus subtilis ]
							[db:pir]
4963512_f2_9	2228	4831	201	66	50	0.38	[ac:b69480] [pn:cobalamin biosynthesis protein (cbim-2) homolog] [or: archaeoglobus
							fulgidus] [db:pir]
4963963_c3_22	2229	4832	573	190	489	8.90E−47	[ac:p44321] [gn:tag:hi0654] [or: haemophilus influenzae ] [ec:3.2.2.20] [de:glycosylase)
							(tag)] [sp:p44321] [db:swissprot]
4964213_c1_13	2230	4833	873	290	307	8.50E−27	[ac:q11046] [gn:mtcy50.09] [or: mycobacterium tuberculosis ] [de:hypothetical abc
							transporter atp-binding protein cy50.09] [sp:q11046] [db:swissprot]
4964562_c1_50	2231	4834	285	94	382	1.90E−35	[ln:llu76424] [ac:u76424] [pn:putative gtp binding protein] [or: lactococcus lactis ]
							[db:genpept] [de: lactococcus lactis dnaa (dnaa) gene, partial cds; polymerase iiisubunit
							dnan (dnan), exonuclease rexb (rexb), and exonuclease rexa(rexa) genes, complete c
4964682_f3_56	2232	4835	1065	354	865	1.30E−86	[ln:scu96107] [ac:u96107] [pn:n5,n10-methylenetetrahydromethanopterin]
							[or: staphylococcus carnosus ] [db:genpept-bct] [de: staphylococcus carnosus n5,n10-
							methylenetetrahydromethanopterinreductase homolog, sceb precursor (sceb) and
							putative transmembraneprot
4964687_c2_14	2233	4836	750	249	97	0.03	[ln:af007261] [ac:af007261] [pn:secy-type transporter protein] [gn:secy]
							[or: mitochondrion reclinomonas americana ] [sr: reclinomonas americana ] [db:genpept-
							inv] [de: reclinomonas americana mitochondrial dna, complete genome.] [le:28012]
							[re:29244] [di:direc
4964687_c2_15	2234	4837	405	134	130	9.80E−09	[ln:llu74322] [ac:u74322] [pn:unknown] [or: lactococcus lactis ] [db:genpept-bct]
							[de: lactococcus lactis 6-phosphogluconate dehydrogenase gene completecds and
							potassium transporter homolog gene, partial cds.] [nt:orf1] [le:204] [re:764] [di:direct]
4978383_c1_57	2235	4838	843	280	731	2.00E−72	[ac:e69742] [pn:abc transporter (atp-binding protein) homolog ybae] [gn:ybae]
							[or: bacillus subtilis ] [db:pir]
506878_f2_22	2236	4839	306	101	64	0.092	[ac:a53203] [pn:hypothetical protein 1] [or: desulfovibrio vulgaris ] [db:pir]
5079035_f3_8	2237	4840	495	164	235	7.30E−20	[ac:s31638] [pn:hypothetical protein] [or: lactobacillus curvatus ] [db:pir]
5081275_c2_40	2238	4841	303	100	97	3.10E−05	[ac:p00212] [gn:fer] [or: bacillus stearothermophilus ] [de:ferredoxin] [sp:p00212]
							[db:swissprot]
5083586_f1_1	2239	4842	252	83	103	5.20E−05	[ac:d69029] [pn:pantothenate metabolism flavoprotein] [gn:mth1216]
							[or: methanobacterium thermoautotrophicum ] [db:pir]
5084525_c2_57	2240	4843	3243	1080	4863	0	[ln:strhyaluro] [ac:120670] [pn:hyaluronidase] [or: streptococcus pneumoniae ]
							[sr: streptococcus pneumoniae (serotype 23) dna] [db:genpept-bct] [de: streptococcus
							pneumoniae hyaluronidase gene, complete cds.] [nt:putative] [le:90] [re:2939]
5085775_c1_39	2241	4844	264	87	67	0.05	[ac:p18389] [gn:yjjb] [or: escherichia coli ] [de:14.1 kd protein in dnat-bglj intergenic
							region (protein p-14) (f108)] [sp:p18389] [db:swissprot]
5086066_f3_26	2242	4845	1416	471	1861	3.60E−192	[ac:p80868:p70980] [gn:fusa:fus] [or: bacillus subtilis ] [de:elongation factor g (ef-g)
							(vegetative protein 19) (veg19)] [sp:p80868:p70980] [db:swissprot]
5088932_f3_11	2243	4846	609	202	721	2.30E−71	[ac:p33170] [gn:tuf] [or: streptococcus oralis ] [de:elongation factor tu (ef-tu)]
							[sp:p33170] [db:swissprot]
509827_c3_70	2244	4847	3510	1169	2572	1.60E−267	[ac:p37474] [gn:mfd] [or: bacillus subtilis ] [de:transcription-repair coupling factor(trcf)]
							[sp:p37474] [db:swissprot]
5101507_f2_5	2245	4848	438	145	305	2.80E−27	[ac:d69843] [pn:conserved hypothetical protein yjbd] [gn:yjbd] [or: bacillus subtilis ]
							[db:pir]
5110087_c3_18	2246	4849	234	77	69	0.088	[ln:mtcy7h7b] [ac:z95557] [pn:gcha] [gn:gcha] [or: mycobacterium tuberculosis ]
							[db:genpept-bct] [de: mycobacterium tuberculosis region b of cosmid scy07h7.]
							[nt:mtcy07h7b.13, gcha, len:202 aa, similar to] [le:10907] [re:11515] [di:direct]
5110207_c2_62	2247	4850	444	147	159	8.30E−12	[ac:e69786] [pn:ribosomal-protein-alanine n-acetyltransfer homolog ydid] [gn:ydid]
							[or: bacillus subtilis ] [db:pir]
5111052_c3_16	2248	4851	531	176	892	1.70E−89	[ac:p04043] [gn:dpnm] [or: streptococcus pneumoniae ] [ec:2.1.1.72]
							[de:methyltransferase dpnii 1) (m.dpnii 1)] [sp:p04043] [db:swissprot]
5111552_c1_74	2249	4852	666	221	173	2.80E−13	[ac:s74490] [pn:type 4 prepilin peptidase hofd:hypothetical protein slr1120:hypothetical
							protein slr1120] [gn:hofd] [or:synechocystis sp.] [sr:pcc 6803, , pcc 6803] [sr:pcc 6803,]
							[db:pir]
5120262_c3_15	2250	4853	744	247	613	6.40E−60	[ac:p25813] [gn:gidb] [or: bacillus subtilis ] [de:glucose inhibited division protein b]
							[sp:p25813] [db:swissprot]
5120278_f1_4	2251	4854	1014	337	99	1.30E−05	[ac:a69536] [pn:mevalonate kinase (mvk) homolog] [or: archaeoglobus fulgidus ]
5120338_c2_31	2252	4855	732	243	136	6.40E−07	[ac:c69537] [pn:hypothetical protein af2299] [or: archaeoglobus fulgidus ] [db:pir]
5120338_f2_14	2253	4856	684	227	614	5.00E−60	[ln:d78182] [ac:d78182] [gn:orf3] [or: streptococcus mutans ] [sr: streptococcus mutans
							(strain:xc) dna] [db:genpept-bct] [de: streptococcus mutans dna for dtdp-rhamnose
							synthesis pathway,complete cds.] [le:1020] [re:1718] [di:direct]
5134626_f1_3	2254	4857	204	67	121	5.00E−07	[ln:cdu02617] [ac:u02617] [pn:dtxr/iron regulated lipoprotein precursor] [gn:irp1]
							[fn:iron transport] [or: corynebacterium diphtheriae ] [db:genpept-bct]
							[de: corynebacterium diphtheriae dtxr/iron-regulated lipoproteinprecursor (irp1) gene,
5136001_f1_11	2255	4858	204	67	48	0.039	[ln:atac002341] [ac:ac002341] [gn:t14g11.28] [or: arabidopsis thaliana ] [sr:thale cress]
							[db:genpept-pln] [de: arabidopsis thaliana chromosome ii bac t14g11 genomic
							sequence, complete sequence.] [nt:unknown protein] [le:77038:77428:77577:77729]
							[re:77157:774
5136510_f1_4	2256	4859	3309	1102	1303	4.90E−133	[ln:llu76424] [ac:u76424] [pn:exonuclease rexb] [gn:rexb] [or: lactococcus lactis ]
							[db:genpept] [de: lactococcus lactis dnaa (dnaa) gene, partial cds; polymerase iiisubunit
							dnan (dnan), exonuclease rcxb (rexb), and exonuclcase rexa(rexa) genes, complete cds
5189162_f2_22	2257	4860	867	288	266	3.80E−23	[ac:e64128] [pn:lic-1 protein d] [gn:licd] [or: haemophilus influenzae ] [db:pir]
5195885_c3_122	2258	4861	1215	404	335	1.80E−30	[ln:ae001169] [ac:ae001169:ae000783] [pn:3-hydroxy-3-methylglutaryl-coa synthase]
							[gn:bb0683] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 55 of 70) of the complete genome.] [nt:similar to gb:x8
5209426_f1_4	2259	4862	954	317	1061	2.20E−107	[ac:q08510] [gn:mala] [or: streptococcus pneumoniae ] [de:mala protein] [sp:q08510]
							[db:swissprot]
522562_f2_19	2260	4863	207	68	59	0.75	[ln:aadoxp24h] [ac:y08730] [pn:c-terminal part of hydrophobic protein] [gn:orf2]
							[or: acidianus ambivalens ] [db:genpept-bct] [de: a.ambivalens doxa gene locus with doxd
							and doxa genes.] [le:<1] [re:667] [di:direct]
5251878_c3_72	2261	4864	1347	448	106	0.014	[ln:ae001115] [ac:ae001115:ae000783] [pn:phosphoglucomutase (femd)] [gn:bb0004]
							[or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct] [de: borrelia
							burgdorferi (section 1 of 70) of the complete genome.] [nt:similar to gb:177117
							pid:159174
5251967_f1_4	2262	4865	888	295	1066	6.40E−108	[ln:ab009314] [ac:ab009314] [pn:proton-translocating atpase, gamma subunit] [gn:atpg]
							[or: streptococcus bovis ] [sr: streptococcus bovis (strain:jb-1) dna] [db:genpept-bct]
							[de: streptococcus bovis gene for proton-translocating atpase subunits,complete cds.]
5266578_f2_6	2263	4866	909	302	1194	1.70E−121	[ln:af017421] [ac:af017421] [pn:putative heat shock protein htpx] [gn:htpx]
							[or: streptococcus gordonii ] [db:genpept-bct] [de: streptococcus gordonii putative heat
							shock protein htpx (htpx)gene, complete cds.] [le:127] [re:1020] [di:direct]
5267213_c3_83	2264	4867	654	217	358	6.70E−33	[ac:p00888] [gn:arof] [or: escherichia coli ] [ec:4.1.2.15] [de:synthetase) (3-deoxy-d-
							arabino-heptulosonate 7-phosphate synthase)] [sp:p00888] [db:swissprot]
5267213_f1_1	2265	4868	879	292	1439	1.90E−147	[ac:p72535] [gn:thrb] [or: streptococcus pneumoniae ] [ec:2.7.1.39] [de:homoserine
							kinase, (hk)] [sp:p72535] [db:swissprot]
5267812_c1_29	2266	4869	1236	411	982	5.10E−99	[ac:e69988] [pn:conserved hypothetical protein ytbj] [gn:ytbj] [or: bacillus subtilis ]
							[db:pir]
5267968_f2_25	2267	4870	501	166	450	1.20E−42	[ac:a70024] [pn:conserved hypothetical protein yutg] [gn:yutg] [or: bacillus subtilis ]
							[db:pir]
5271967_f2_17	2268	4871	222	73	120	1.10E−07	[ac:p43914] [gn:xseb:hi1437] [or: haemophilus influenzae ] [ec:3.1.11.6] [de:small
							subunit)] [sp:p43914] [db:swissprot]
5273265_c2_55	2269	4872	1791	596	645	2.60E−63	[ac:p22638] [gn:heta] [or:anabaena sp] [sr:pcc 7120,] [de:heterocyst differentiation atp-
							binding protein heta] [sp:p22638] [db:swissprot]
5273403_f3_23	2270	4873	261	86	70	0.15	[ln:celk05f6] [ac:af040653] [gn:k05f6.9] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid k05f6.]
							[le:31566:32526] [re:32478:32611] [di:complementjoin]
5273463_f2_24	2271	4874	885	294	719	3.80E−71	[ln:pbu42580] [ac:u42580:u17055:u32570] [gn:a78r] [or: paramecium bursaria chlorella
							virus 1] [db:genpept-vrl] [de: paramecium bursaria chlorella virus 1, complete genome.]
							[nt:contains atp/gtp-binding site motif a; similar to] [le:40886] [re:41782] [di:dir
5274012_c2_14	2272	4875	768	255	321	5.60E−29	[ln:sadired] [ac:z16422] [pn:unknown] [gn:orf2] [or: staphylococcus aureus ]
							[db:genpept-bct] [de: s.aureus dfrb gene for dihydrofolate reductase.] [le:646] [re:1230]
5274192_c2_80	2273	4876	579	192	292	6.60E−26	[ac:p35155] [gn:ypuh] [or: bacillus subtilis ] [de:hypothetical 22.0 kd protein in ribt-dacb
							intergenic region (orfx8)] [sp:p35155] [db:swissprot]
5275250_c1_59	2274	4877	795	264	69	0.017	[ln:ae001158] [ac:ae001158:ae000783] [pn:conserved hypothetical integral membrane]
							[gn:bb0574] [or: borrelia burgdorferi ] [sr:lyme disease spirochete] [db:genpept-bct]
							[de: borrelia burgdorferi (section 44 of 70) of the complete genome.] [nt:similar to pir:
5275332_f3_9	2275	4878	723	240	692	2.70E−68	[ac:f69725] [pn:trna methyltransferase trmd] [gn:trmd] [or: bacillus subtilis ] [db:pir]
5275337_c2_60	2276	4879	225	74	69	0.028	[ln:spu11955] [ac:u11955] [gn:emml] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes m type 22 (emml) gene, partial cds.] [le:<1] [re:
5275338_f1_14	2277	4880	801	266	509	6.70E−49	[ln:adu92287] [ac:u92287] [pn:pyrroline-5-carboxylate reductase] [or: actinidia
							deliciosa ] [db:genpept-pln] [de: actinidia deliciosa pyrroline-5-carboxylate reductase
							mrna,complete cds.] [le:30] [re:866] [di:direct]
5282950_c1_17	2278	4881	198	65	59	0.05	[ln:s74025] [ac:s74025] [pn:map-2] [gn:map-2] [or: bos taurus ] [sr:cattle brain]
							[db:genpept-mam] [de:map-2=microtubule-associated protein-2 {3′ region} [cattle,
							brain,mrna partial, 963 nt].] [nt:microtubule-associated protein-2; method:] [le:1]
							[re:963] [
5291062_f1_2	2279	4882	540	179	129	3.30E−07	[ac:h69815] [pn:hypothetical protein ygae] [gn:ygae] [or: bacillus subtilis ] [db:pir]
5292177_f1_2	2280	4883	5904	1967	1280	5.00E−142	[ln:smiga1prt] [ac:y10285] [pn:igal protease] [gn:iga] [or: streptococcus mitis ]
							[db:genpept-bct] [ec:3.4.24.13] [de: s.mitis iga gene.] [nt:iga-specific
							metalloendopeptidase] [le:64] [re:5628] [di:direct]
5292213_f2_9	2281	4884	1416	471	2109	1.90E−218	[ln:ab009314] [ac:ab009314] [pn:proton-translocating atpase, beta subunit] [gn:atpd]
							[or: streptococcus bovis ] [sr: streptococcus bovis (strain:jb-1) dna] [db:genpept-bct]
							[de: streptococcus bovis gene for proton-translocating atpase subunits,complete cds.]
5292287_c1_18	2282	4885	858	285	149	9.80E−09	[ac:q58322] [gn:mj0912] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj0912] [sp:q58322] [db:swissprot]
5292962_c2_19	2283	4886	462	153	109	1.60E−06	[ac:a69783] [pn:transcriptional regulator (marr family) homolog ydgg] [gn:ydgg]
							[or: bacillus subtilis ] [db:pir]
5318788_c1_6	2284	4887	981	326	497	1.30E−47	[ac:p54545] [gn:yqjh] [or: bacillus subtilis ] [de:hypothetical 47.0 kd protein in glnq-ansr
							intergenic region] [sp:p54545] [db:swissprot]
5320291_c3_44	2285	4888	222	73	68	0.21	[ln:ab004537] [ac:ab004537] [pn:pas4 protein] [gn:pi036] [or: schizosaccharomyces
							pombe ] [sr: schizosaccharomyces pombe (strain:972 h-) dna, clone_lib:mizukam]
							[db:genpept-pln] [de: schizosaccharomyces pombe 37 kb genomic dna, clone c213.]
							[nt:similar to s.c
5322707_c3_15	2286	4889	357	118	123	4.70E−07	[ln:s75490] [ac:s75490] [gn:orf2] [or: neisseria gonorrhoeae ] [sr: neisseria gonorrhoeae
							ms11] [db:genpept-bct] [de:competence region:iga=iga protease coma=transformation
							competence[ neisseria gonorrhoeae , ms11, genomic, 3 genes 2664 nt].] [le:889] [re:22
5322817_c2_51	2287	4890	360	119	90	0.00082	[ac:s60743] [pn:secreted antigen p36/p34 precursor] [or: mycobacterium bovis ] [db:pir]
5323526_f1_1	2288	4891	282	93	120	1.10E−07	[ln:humbindc] [ac:110405] [pn:dna-binding protein] [or: homo sapiens ] [sr: homo sapiens
							cdna to mrna] [db:genpept-pri1] [de: homo sapiens dna binding protein for surfactant
							protein b mrna,complete cds.] [le:1577] [re:1930] [di:direct]
5323817_c2_38	2289	4892	879	292	122	2.50E−05	[ac:s75891] [pn:hypothetical protein] [or:synechocystis sp] [sr:pcc 6803, , pcc 6803]
							[sr:pcc 6803, ] [db:pir]
5330008_c2_32	2290	4893	201	67	65	0.096	[ac:q00779] [gn:atp2a2] [or: felis silvestris catus ] [sr:,cat] [ec:3.6.1.38] [de:(calcium
							pump) (serca2)] [sp:q00779] [db:swissprot]
5344687_c2_13	2291	4894	213	70	67	0.045	[ac:p20624] [gn:fdxb] [or: rhodobacter capsulatus ] [sr:, rhodopseudomonas capsulata ]
							[de:ferredoxin iii (fdiii)] [sp:p20624] [db:swissprot]
5355015_f3_48	2292	4895	1041	346	1405	7.60E−144	[ln:spz82002] [ac:z82002] [pn:pcpc] [gn:pcpc] [fn:unknown] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: s.pneumoniae pcpb and pcpc genes.] [nt:pcpc
							contains a choline binding domain] [le:1401] [re:2285] [di:direct]
5367312_c1_56	2293	4896	657	218	148	6.90E−09	[ln:bsu87792] [ac:u87792] [pn:unknown] [or: bacillus subtilis ] [db:genpept-bct]
							[de: bacillus subtilis trna-ala, phosphatidylglycerophosphate synthase(pgsa) and cina
							(cina) genes, complete cds, and reca (reca) gene,partial cds.] [nt:orf307; hypothetical
5367767_f1_5	2294	4897	741	246	121	2.10E−05	[ac:h69779] [pn:antibiotic resistance protein homolog ydfb] [gn:ydfb] [or: bacillus
							subtilis ] [db:pir]
5369162_f1_4	2295	4898	1452	483	771	1.20E−76	[ac:c70014] [pn:rhamnulokinase homolog yulc] [gn:yulc] [or: bacillus subtilis ] [db:pir]
5370313_c1_20	2296	4899	198	65	74	0.13	[ln:celf22d3] [ac:u28993] [gn:f22d3.1] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid f22d3.]
							[nt:coded for by c. elegans cdna yk34h2.5; coded for by] [le:27077:27160:27520:2775
54702_f1_10	2297	4900	753	250	1294	4.40E−132	[ln:spu33315] [ac:u33315] [pn:response regulator] [gn:come] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae orf1 gene, partial cds,
							competencestimulating peptide precursor (comc), histidine protein kinase(comd) and
							response reg
547760_f3_42	2298	4901	1095	364	670	5.80E−66	[ln:llpyrc] [ac:x78999] [gn:unknown] [or: lactobacillus leichmannii ] [db:genpept-bct]
							[de: l.leichmannii pyrc gene.] [le:1827] [re:
548512_f2_11	2299	4902	1206	401	969	1.20E−97	[ac:p50853] [gn:ribd:ribg] [or: actinobacillus pleuropneumoniae ] [sr: haemophilus
							pleuropneumoniae ] [ec:3.5.4.—] [de:riboflavin-specific deaminase] [sp:p50853]
							[db:swissprot]
549090_f3_10	2300	4903	405	134	94	0.00021	[ac:s57993] [pn:chalcone reductase homolog] [or: sesbania rostrata ] [db:pir]
550002_f3_11	2301	4904	264	87	82	0.0021	[ln:mslmtfr4a] [ac:m83759] [pn:nadh dehydrogenase] [gn:nd1] [or: mitochondrion
							mytilus edulis ] [sr: mitochondrion mytilus edulis ( organelle mitochondrion mytilu ]
							[db:genpept-inv] [de: mytilus edulis mitochondrial nadh dehydrogenase subunit 1
							(nd1)gene, 3′ en
554503_f2_26	2302	4905	822	273	771	1.20E−76	[ln:ctsialida] [ac:y08695] [pn:putative acylneuraminate lyase] [or: clostridium tertium ]
							[db:genpept-bct] [ec:4.1.3.3] [de: clostridium tertium nanh gene.] [nt:monomer]
							[le:2481] [re:
555127_c2_30	2303	4906	1443	480	1679	7.00E−173	[ac:s52736] [pn:glucosyltranserase] [or: streptococcus pneumoniae ] [db:pir]
556567_c2_87	2304	4907	216	71	53	0.11	[ln:pfcompirb] [ac:x95276] [gn:rps4] [or: plasmodium falciparum ] [sr:malaria parasite]
							[db:genpept-inv] [de: p.falciparum complete gene map of plastid-like dna (ir-b).]
							[le:340] [re:966] [di:direct]
569688_c3_50	2305	4908	213	70	50	0.47	[ln:af019757] [ac:af019757] [pn:aggrecan interglobular domain] [or: sus scrofa ] [sr:pig]
							[db:genpept-mam] [de: sus scrofa aggrecan interglobular domain mrna, partial cds.]
							[le:<1] [re:
569688_c3_68	2306	4909	213	70	50	0.47	[ln:af019757] [ac:af019757] [pn:aggrecan interglobular domain] [or: sus scrofa ] [sr:pig]
							[db:genpept-mam] [de: sus scrofa aggrecan interglobular domain mrna, partial cds.]
							[le:<1] [re:
569688_c3_94	2307	4910	213	70	50	0.47	[ln:af019757] [ac:af019757] [pn:aggrecan interglobular domain] [or: sus scrofa ] [sr:pig]
							[db:genpept-mam] [de: sus scrofa aggrecan interglobular domain mrna, partial cds.]
							[le:<1] [re:
572836_f1_7	2308	4911	909	302	742	1.40E−73	[ac:a69879] [pn:conserved hypothetical protein yloq] [gn:yloq] [or: bacillus subtilis ]
							[db:pir]
579462_f1_8	2309	4912	210	69	205	1.10E−16	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
580306_f2_12	2310	4913	828	275	72	0.07	[ln:glav4131] [ac:y14131] [pn:hypothetical protein] [or:grapevine leafroll-associated
							virus 2] [db:genpept-vrl] [de:grapevine leafroll-associated virus 2 genes encoding rna
							polymeraseand coat protein, hsp70, hsp90 gene and orf2, orf7 and orf8.] [nt:orf2]
581875_c3_13	2311	4914	633	210	618	1.90E−60	[ac:f69708] [pn:uridylate kinase smba] [gn:smba] [or: bacillus subtilis ] [db:pir]
585952_f3_41	2312	4915	660	219	77	0.11	[ac:d69481] [pn:transcriptional regulatory protein, arsr family homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
5863902_f3_26	2313	4916	1011	336	794	4.20E−79	[ac:p37465] [gn:mets] [or: bacillus subtilis ] [ec:6.1.1.10] [de:(metrs)] [sp:p37465]
							[db:swissprot]
5876531_f1_5	2314	4917	915	304	1542	2.30E−158	[ln:spu43526] [ac:u43526] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae neuraminidase b (nanb) gene, complete cds,and
							neuraminidase (nana) gene, partial cds.] [nt:orf-3] [le:3367] [re:4251] [di:direct]
5881937_f2_27	2315	4918	1047	348	829	8.30E−83	[ac:p37567] [gn:yacf] [or: bacillus subtilis ] [de:hypothetical 37.1 kd protein in folk-lyss
							intergenic region] [sp:p37567] [db:swissprot]
5882035_c1_53	2316	4919	2013	670	3322	0	[ln:spgyrborf] [ac:z67740] [pn:dna gyrase] [gn:gyrb] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: s.pneumoniae gyrb gene and unknown orf.] [nt:gyrb subunit]
							[le:452] [re:2398] [di:direct]
5891563_c3_87	2317	4920	444	147	82	0.51	[ac:p75207] [or: mycoplasma pneumoniae ] [de:hypothetical atp-binding protein mg390
							homolog] [sp:p75207] [db:swissprot]
5892318_f2_14	2318	4921	246	81	64	0.092	[ac:p01627] [or: mus musculus ] [sr:,mouse] [de:ig kappa chain precursor v-ii region
							(vkappa167)] [sp:p01627] [db:swissprot]
5892811_f3_23	2319	4922	906	301	294	4.10E−26	[ac:c69858] [pn:conserved hypothetical protein yknx] [gn:yknx] [or: bacillus subtilis ]
							[db:pir]
5894213_f2_7	2320	4923	918	305	221	6.00E−22	[ln:lcu28163] [ac:u28163] [pn:eiic-man] [gn:manc] [or: lactobacillus curvatus ]
							[db:genpept-bct] [de: lactobacillus curvatus
							phosphoenolpyruvate:mannosephosphotransferase eiia-man (mana), eiib-man (manb),
							and eiic-man(manc) genes, complete cds and eiid-man (
5897263_f3_37	2321	4924	399	132	107	2.70E−06	[ac:h69267] [pn:cytochrome c oxidase, subunit ii (cbab) homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
5900463_c1_153	2322	4925	1353	450	409	2.70E−38	[ln:u93688] [ac:u93688] [or: staphylococcus aureus ] [db:genpept-bct]
							[de: staphylococcus aureus toxic shock syndrome toxin-1 (tst),enterotoxin (ent), and
							integrase (int) genes, complete cds.] [nt:orf11] [le:7956] [re:8729] [di:complement]
5901552_f2_6	2323	4926	399	132	85	0.12	[ac:b64701] [pn:60 kda inner-membrane protein] [or: helicobacter pylori ] [db:pir]
5910307_f2_25	2324	4927	201	66	62	0.52	[ac:s65062] [pn:fiber protein e6 (clone cke6-4a)] [or: gossypium hirsutum ] [sr:, upland
							cotton] [db:pir]
5914813_c2_73	2325	4928	1239	412	169	7.80E−10	[ac:s74444] [pn:hypothetical protein s111204] [or:synechocystis sp.] [sr:pcc 6803, , pcc
							6803] [sr:pcc 6803, ] [db:pir]
5938156_f1_6	2326	4929	321	106	66	0.057	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
5938901_f1_1	2327	4930	474	157	314	3.10E−28	[ac:h69278] [pn:glutamine abc transporter, permease protein (glnp) homolog]
							[or: archaeoglobus fulgidus ] [db:pir]
5939552_f1_4	2328	4931	207	68	63	0.42	[ln:af036708] [ac:af036708] [pn:ribosomal protein 13] [gn:rp13] [or: mycoplasma
							gallisepticum ] [db:genpept-bct] [de: mycoplasma gallisepticum strain a5969var.b
							ribosomal proteins s10(rps10), 13 (rp13), 14 (rp14), 123 (rp123), 12 (rp12), s19 (rps19),122
							(rpl
5941032_f2_3	2329	4932	249	82	64	0.23	[ac:q01223] [gn:b19r] [or:vaccinia virus] [sr:wr,] [de:protein b19] [sp:q01223]
							[db:swissprot]
5944012_c1_55	2330	4933	219	72	64	0.15	[ln:celc49d10] [ac:af016665] [gn:c49d10.7] [or: caenorhabditis elegans ]
							[sr: caenorhabditis elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis
							elegans cosmid c49d10.] [nt:contains similarity to acyltransferases]
							[le:1188:1374:1757] [re:1304:1589
595018_f1_4	2331	4934	969	323	370	3.60E−34	[ac:p05149] [gn:mro] [or: acinetobacter calcoaceticus] [ec:5.1.3.3] [de:aldose 1-
							epimerase precursor, (mutarotase)] [sp:p05149] [db:swissprot]
5953152_c1_37	2332	4935	225	74	59	0.93	[ac:p24970] [gn:mtnd2:nd2:nadh2] [or: balaenoptera physalus ] [sr:,finback
							whale:common rorqual] [ec:1.6.5.3] [de:nadh-ubiquinone oxidoreductase chain 2,]
							[sp:p24970] [db:swissprot]
5960849_c1_6	2333	4936	241	80	73	0.061	[ac:p87378] [gn:crk] [or: xenopus laevis ] [sr:,african clawed frog] [de:sh2/sh3 adaptor
							crk (adapter molecule crk) (crk2)] [sp:p87378] [db:swissprot]
5960911_f2_1	2334	4937	360	119	76	0.65	[ln:d64052] [ac:d64052] [pn:cytochrome p450 like_tbp] [gn:ctbp] [or: nicotiana
							tabacum ] [sr: nicotiana tabacum (strain:bright yellow 2) cdna to mrna] [db:genpept-pln]
							[ec:1.14.14.1] [de:tobacco mrna for cytochrome p450 like_tbp, complete cds.] [le:155]
							[re:
5968801_c1_7	2335	4938	783	260	295	3.20E−26	[ac:p39153] [gn:ywlc:ipc-29d] [or: bacillus subtilis ] [de:hypothetical 37.0 kd protein in
							spoiir-glyc intergenic region] [sp:p39153] [db:swissprot]
597058_f3_9	2336	4939	297	98	256	4.30E−22	[ac:b64666] [pn:glutamine abc transporter, permease protein] [or: helicobacter pylori ]
							[db:pir]
5970678_f3_43	2337	4940	312	103	59	0.28	[ac:s43286] [pn:murf4 protein] [or: trypanosoma cruzi] [db:pir]
5977188_f3_40	2338	4941	318	105	69	0.028	[ac:p01058] [or: phaseolus angularis ] [sr:,adzuki bean: vigna angularis ] [de:bowman-birk
							type proteinase inhibitor] [sp:p01058] [db:swissprot]
5978942_f1_1	2339	4942	858	285	472	5.60E−45	[ac:g69295] [pn:oxalate/formate antiporter (oxlt-2) homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
5984525_f3_49	2340	4943	258	85	111	1.60E−05	[ac:a30374:q90796] [pn:hypothetical 77k protein (spot 3′ region)] [or: escherichia coli ]
							[db:pir] [mp:82 min]
5991712_f2_2	2341	4944	1929	642	1116	2.30E−183	[ac:g69773] [pn:conserved hypothetical protein ydci] [gn:ydci] [or: bacillus subtilis ]
							[db:pir]
5992081_c2_47	2342	4945	207	68	66	0.46	[ln:cef40g12] [ac:z77661] [pn:f40g12.10] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de: caenorhabditis elegans cosmid f40g12, complete sequence.] [nt:similar to protein-
							tyrosine phosphatase] [le:28215:28401:28641:29132] [re:28298:28592:28964:29521]
							[di:
5992836_f1_7	2343	4946	195	64	60	0.23	[ac:p20958] [or: chlorobium limicola f. spthiosulfatophilum] [de:cytochrome subunit of
							sulfide dehydrogenase (flavocytochrome c)] [sp:p20958] [db:swissprot]
5992836_f3_20	2344	4947	198	65	48	0.64	[ln:nau13256] [ac:u13256] [pn:rnase ne] [fn:extracellular ribonuclease] [or: nicotiana
							alata ] [sr:persian tobacco] [db:genpept-pln] [de: nicotiana alata rnase ne mrna, complete
							cds.] [le:26] [re:721] [di:direct]
6015662_c3_54	2345	4948	222	73	58	0.75	[ln:sc23cds] [ac:x86470] [pn:unknown] [gn:orf] [or: saccharomyccs cerevisiae ]
							[sr:baker's yeast] [db:genpept-pln] [de: s.cerevisiae pms1, tpm1, mks1, ymk1, msk1,
							odp2, y19a & fkh2 genes.] [nt:n2348, len:191, cai:0.061] [le:10953] [re:11528]
601627_c2_17	2346	4949	990	329	235	9.60E−20	[ln:ssu34305] [ac:u34305] [or: shigella sonnei ] [sr: shigella sonnei strain=53g]
							[db:genpept-bct] [de: shige1la sonnei form i operon orf protein genes, complete
							cds,insertion sequence is630 protein gene, complete cds.] [nt:orf7; method: conceptual
							translatio
6016963_f3_23	2347	4950	678	225	75	0.093	[ac:p29383] [gn:ag13] [or: arabidopsis thaliana ] [sr:,mouse-ear cress] [de:floral homeotic
							protein ag13 (fragment)] [sp:p29383] [db:swissprot]
602193_f1_1	2348	4951	1131	376	749	2.50E−74	[ac:s66080:i40018] [pn:cell division protein tms26] [gn:tms26] [or: bacillus subtilis ]
							[db:pir]
6022510_f3_39	2349	4952	237	78	55	0.14	[ac:p11449] [gn:vm26aa:vm26a.1] [or: drosophila melanogaster ] [sr:,fruit fly]
							[de:sv17.5)] [sp:p11449] [db:swissprot]
6026712_f1_3	2350	4953	1488	495	1077	4.30E−109	[ac:p21885:p26934] [gn:cad] [or: bacillus subtilis ] [ec:4.1.1.18] [de:lysine
							decarboxylase, (ldc)] [sp:p21885:p26934] [db:swissprot]
604087_c3_44	2351	4954	309	102	52	0.83	[ac:p49828] [or: odontella sinensis ] [de:hypothetical 5.5 kd protein in ycf5-rps6
							intergenic region (orf46)] [sp:p49828] [db:swissprot]
6048200_f2_22	2352	4955	267	88	69	0.028	[ac:ps0142] [pn:replication-associated protein] [gn:11″] [or:sugarcane streak virus]
							[db:pir]
6048437_f1_10	2353	4956	1026	341	630	1.00E−61	[ac:b69763] [pn:ferrichrome abc transporter (permease) homolog ycln] [gn:ycln]
							[or: bacillus subtilis ] [db:pir]
6053378_c3_49	2354	4957	840	279	351	3.70E−32	[ac:s42925] [pn:probable transport protein] [or: staphylococcus aureus ] [db:pir]
6054075_f2_21	2355	4958	426	141	251	1.50E−21	[ac:a56085] [pn:regulatory protein copy] [gn:copy] [or: enterococcus hirae ] [db:pir]
6054812_c2_19	2356	4959	264	87	94	0.00017	[ln:mtcy22d7] [ac:z83866] [pn:unknown] [gn:mtcy22d7.23] [or: mycobacterium
							tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis cosmid scy22d7.]
							[nt:mtcy22d7.23. len:216. function: unknown, resembles] [le:24752] [re:25402]
							[di:direct]
6057827_f1_3	2357	4960	267	88	67	0.093	[ac:c32322] [pn:lignin peroxidase, v4] [cl:lignin peroxidase] [or: phanerochaete
							chrysosporium ] [ec:1.11.1.—] [db:pir]
6064537_f3_25	2358	4961	282	93	79	0.097	[ac:p12351] [gn:cyp1:hap1:ylr256w] [or: saccharomyces cerevisiae] [sr:,baker's yeast]
							[de:cyp1 activatory protein] [sp:p12351] [db:swissprot]
6070932_c1_28	2359	4962	357	118	89	0.00022	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
6094412_c3_101	2360	4963	516	171	176	6.50E−13	[ln:u93688] [ac:u93688] [pn:integrase] [gn:int] [or: staphylococcus aureus ] [db:genpept-
							bct] [de: staphylococcus aureus toxic shock syndrome toxin-1 (tst),enterotoxin (ent), and
							integrase (int) genes, complete cds.] [nt:similar to staphylococcal phage integ
6124068_f2_6	2361	4964	303	100	72	0.3	[ac:b48529] [pn:mitochondrial processing peptidase, beta chain precursor:p-
							53:ubiquinol--cytochrome-c reductase, core protein ii] [cl:mitochondrial processing
							peptidase alpha chain] [or: solanum tuberosum ] [sr:, potato] [ec:3.4.99.41:1.10.2.2]
							[db:pir]
6132952_c1_53	2362	4965	897	298	519	5.90E−50	[ac:p06567] [gn:dnai] [or: bacillus subtilis ] [de:primosomal protein dnai] [sp:p06567]
							[db:swissprot]
6148963_f3_39	2363	4966	609	202	615	3.90E−60	[ln:lmu15554] [ac:u15554] [pn:p-type adenosine triphosphatase] [gn:ctpa] [fn:involved
							in cation transport] [or: listeria monocytogenes] [db:genpept-bct] [de: listeria
							monocytogenes p-type adenosine triphosphatase (ctpa) gene,partial cds.] [nt:similar to
							ent
6149127_c1_68	2364	4967	456	151	97	0.00024	[ln:ssk3meca1] [ac:y13052] [gn:orf145] [or: staphylococcus sciuri ] [db:genpept-bct]
							[de: s.sciuri mecal gene, strain k3(mm2).] [le:3749] [re:4186] [di:direct]
6251700_f1_3	2365	4968	201	66	61	0.39	[ac:p15553] [gn:nd6] [or: strongylocentrotus purpuratus ] [sr:purple sea urchin]
							[ec:1.6.5.3] [de:nadh-ubiquinone oxidoreductase chain 6,] [sp:p15553] [db:swissprot]
6254758_c1_9	2366	4969	228	75	103	7.10E−06	[ln:spz82001] [ac:z82001] [pn:unknown] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: s.pneumoniae pcpa gene and open reading frames.] [le:<1] [re:174] [di:direct]
6258467_c3_39	2367	4970	786	261	439	1.80E−41	[ac:p39610] [gn:thid:ipa-52r] [or: bacillus subtilis ] [ec:2.7.4.7] [de:(hmp-p kinase)]
							[sp:p39610] [db:swissprot]
6260875_c1_170	2368	4971	414	137	77	0.004	[ac:a57260] [pn:divergicin a precursor] [or: carnobacterium divergens ] [db:pir]
6265677_f2_21	2369	4972	555	184	477	1.70E−45	[ac:q02140] [gn:ilvn] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:4.1.3.18] [de:(acetohydroxy-acid synthase small subunit) (als)] [sp:q02140]
							[db:swissprot]
6272637_f2_5	2370	4973	225	74	97	0.00022	[ac:s71558] [pn:probable cell wall-plasma membrane linker protein prp
							precursor:hybrid-proline-rich protein] [or: brassica napus ] [sr:, rape] [db:pir]
6272686_c3_117	2371	4974	699	232	429	2.00E−40	[ac:e69878] [pn:rna-binding sun protein homolog ylom] [gn:ylom] [or: bacillus subtilis ]
							[db:pir]
6272968_f2_4	2372	4975	435	144	175	1.70E−13	[ln:lcu28163] [ac:u28163] [pn:eiia-man] [gn:mana] [or: lactobacillus curvatus ]
							[db:genpept-bct] [de: lactobacillus curvatus
							phosphoenolpyruvate:mannosephosphotransferase eiia-man (mana), eiib-man (manb),
							and eiic-man(manc) genes, complete cds and eiid-man (
6273333_f2_13	2373	4976	2013	670	173	4.10E−09	[ln:avialgeb] [ac:139096:129009] [pn:mannuronan c-5-epimerase] [gn:alge1]
							[or: azotobacter vinelandii ] [sr: azotobacter vinelandii (strain e) dna] [db:genpept-bct]
							[de: azotobacter vinelandii mannuronan c-5-epimerase (alge4, alge1,alge2 and alge3)
							genes, com
6273577_c3_237	2374	4977	375	124	52	0.95	[ac:p19155] [gn:psbj] [or: cyanophora paradoxa ] [de:photosystem ii reaction centre j
							protein] [sp:p19155] [db:swissprot]
6273592_c2_177	2375	4978	495	164	79	0.64	[ac:h69867] [pn:conserved hypothetical protein ykvi] [gn:ykvi] [or: bacillus subtilis ]
							[db:pir]
6276049_c1_49	2376	4979	592	197	379	4.00E−35	[ac:p26946] [or: bacillus firmus ] [de:hypothetical abc transporter atp-binding protein]
							[sp:p26946] [db:swissprot]
629005_f1_6	2377	4980	750	249	391	2.10E−36	[ac:p25052] [gn:tena] [or: bacillus subtilis ] [de:transcriptional activator tena]
							[sp:p25052] [db:swissprot]
631377_c2_23	2378	4981	1128	375	437	2.90E−41	[ac:p42599:p42600:p76661] [gn:ygjr] [or: escherichia coli ] [de:hypothetical 37.0 kd
							protein in ebgc-uxaa intergenic region] [sp:p42599:p42600:p76661] [db:swissprot]
632943_c2_30	2379	4982	1110	369	349	6.10E−32	[ac:c69901] [pn:two-component sensor histidine kinase [yoc homolog yocf] [gn:yocf]
							[or: bacillus subtilis ] [db:pir]
6336408_f1_1	2380	4983	1428	475	538	5.70E−52	[ac:q03523] [gn:mure] [or: bacillus subtilis ] [ec:6.3.2.13] [de:(ec 6.3.2.13) (udp-n-
							acetylmuramyl-tripeptide synthetase)] [sp:q03523] [db:swissprot]
6354583_c2_100	2381	4984	243	80	70	0.2	[ac:p53982] [gn:yn1009w:n2870] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[ec:1.1.1.42] [de:decarboxylase) (idh) (nadp+-specific icdh) (idp)] [sp:p53982]
							[db:swissprot]
6360012_c2_34	2382	4985	1245	414	1069	3.10E−108	[ac:p37464] [gn:sers] [or: bacillus subtilis ] [ec:6.1.1.11] [de:seryl-trna synthetase,
							(serine--trna ligase) (serrs)] [sp:p37464] [db:swissprot]
636527_f3_35	2383	4986	1224	407	1418	3.20E−145	[ac:b69620] [pn:enolase eno] [gn:eno] [or: bacillus subtilis ] [db:pir]
641718_f2_7	2384	4987	2736	911	582	2.90E−69	[ac:p54746:p75753] [gn:ybgg] [or: escherichia coli ] [de:hypothetical 100.0 kd protein in
							hrsa-cyda intergenic region] [sp:p54746:p75753] [db:swissprot]
6417500_f2_13	2385	4988	711	236	552	1.90E−53	[ac:h69744] [pn:conserved hypothetical protein ybbp] [gn:ybbp] [or: bacillus subtilis ]
							[db:pir]
6427137_c3_57	2386	4989	279	92	269	1.80E−23	[ac:f69866] [pn:tetrahydrodipicolinate succinylase homolog ykuq] [gn:ykuq]
							[or: bacillus subtilis ] [db:pir]
6427_f2_26	2387	4990	480	159	544	1.30E−52	[ac:q02420] [gn:mtlf] [or: streptococcus mutans ] [ec:2.7.1.69] [de:(ec 2.7.1.69) (eiii-
							mtl)] [sp:q02420] [db:swissprot]
6430393_f1_14	2388	4991	396	131	316	1.90E−28	[ac:c69742] [pn:conservcd hypothetical protein yazc] [gn:yazc] [or: bacillus subtilis ]
							[db:pir]
6431256_f2_2	2389	4992	2037	678	110	2.30E−07	[ac:s70010] [pn:glutamate/proline-rich protein (clone bb.1.4.1)] [or: rattus norvegicus ]
							[sr:, norway rat] [db:pir]
6447838_f1_3	2390	4993	1515	504	1320	7.70E−135	[ln:spadca] [ac:z71552] [pn:zn-binding lipoprotein] [gn:adca] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae adccba operon.] [le:1527]
							[re:2471] [di:direct]
649043_f2_5	2391	4994	261	86	268	2.30E−23	[ac:g69633] [pn:glutamine abc transporter (atp-binding protein) glnq] [gn:glnq]
							[or: bacilius subtilis ] [db:pir]
6516713_c1_21	2392	4995	1359	452	542	2.10E−52	[ac:p39301] [gn:sgat] [or: escherichia coli ] [de:sgat protein] [sp:p39301] [db:swissprot]
6523577_c1_145	2393	4996	201	66	68	0.11	[ac:p27500:p27530] [or:rice tungro bacilliform virus] [sr:,isolate philippines:rtbv]
							[de:hypothetical 24 kd protein (p24) (orf1)] [sp:p27500:p27530] [db:swissprot]
6525191_c3_12	2394	4997	426	141	96	0.00035	[ac:q04344] [gn:hnt1:hit1:ydl125c] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:hit family protein 1] [sp:q04344] [db:swissprot]
6532311_f1_1	2395	4998	276	91	325	2.10E−29	[ac:p10539] [gn:asd] [or: streptococcus mutans ] [ec:1.2.1.11] [de:dehydrogenase)]
							[sp:p10539] [db:swissprot]
657001_c1_23	2396	4999	219	72	67	0.31	[ln:celc50h11] [ac:af016449] [gn:c50h11.4] [or: caenorhabditis elegans ]
							[sr: caenorhabditis elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis
							elegans cosmid c50h11.] [le:29010:29260:29728:29922]
							[re:29156:29682:29874:30266] [di:directjoin]
657513_c2_40	2397	5000	306	101	96	3.90E−05	[ln:d78257] [ac:d78257] [pn:orf11] [gn:orf11] [or: enterococcus faecalis ]
							[sr: enterococcus faecalis plasmid:pyi17 dna] [db:genpept-bct] [de: enterococcus faecalis
							plasmid pyi17 genes for baca, bacb, orf3,orf4, orf5, orf6, orf7, orf8, orf9, orf10,
657760_f1_14	2398	5001	1383	460	2252	1.30E−233	[ln:spcinrec] [ac:z34303] [pn:dinf protein] [gn:dinf] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae cin operon encoding the cina, reca,
							dinf,lyta genes, and downstream sequences.] [le:2799] [re:4169] [di:direct]
660877_f1_14	2399	5002	888	295	720	2.90E−71	[ac:f69880] [pn:conserved hypothetical protein ylqf] [gn:ylqf] [or: bacillus subtilis ]
							[db:pir]
6647557_f1_12	2400	5003	1959	652	273	4.80E−37	[ln:ab001341] [ac:ab001341] [pn:ncrb] [gn:mcrb] [fn:essential for mcrb] [or: escherichia
							coli ] [sr: escherichia coli dna] [db:genpept-bct] [de: escherichia coli dna for ncrb, mcrc,
							complete cds.] [nt:mcrb protein recognizes and restricts the sequence] [le:12
6648262_c3_96	2401	5004	891	296	385	9.30E−36	[ac:p54947] [gn:yxeh:iplb] [or: bacillus subtilis ] [de:hypothetical 30.2 kd protein in idh-
							deor intergenic region] [sp:p54947] [db:swissprot]
6650286_f3_25	2402	5005	864	287	521	3.60E−50	[ac:q00753] [gn:msmr] [or: streptococcus mutans ] [de:msm operon regulatory protein]
							[sp:q00753] [db:swissprot]
6650306_f2_12	2403	5006	417	138	570	2.30E−55	[ac:p14577] [gn:rplp] [or: bacillus subtilis ] [de:50s ribosomal protein 116] [sp:p14577]
							[db:swissprot]
6672805_c1_40	2404	5007	261	86	73	0.1	[ln:celb0238] [ac:af016450] [gn:b0238.13] [or: caenorhabditis elegans ]
							[sr: caenorhabditis elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis
							elegans cosmid b0238.] [nt:strong similarity to c. elegans esterase cm06b1]
6675286_c3_61	2405	5008	276	91	66	0.22	[ln:mdgc10] [ac:z72425] [pn:major allergen mal d 1] [or: malus domestica ] [sr:apple
							trec] [db:genpept-pln] [de: m.domestica gene for major allergen mal d 1 (clone
							mdgc10).] [le:1] [re:480] [di:direct]
6679005_c3_54	2406	5009	207	68	62	0.034	[ln:atceld] [ac:z77855] [pn:sugar-binding transport protein] [or: anaerocellum
							thermophilum ] [db:genpept-bct] [de: a.thermophilum celd gene.] [nt:putative] [le:3925]
							[re:4836] [di:direct]
6683211_f3_19	2407	5010	255	84	64	0.18	[ac:s26672:s08661] [pn:peroxidase,] [cl:peroxidase] [or: lupinus polyphyllus ] [sr:, large-
							leaved lupine] [ec:1.11.1.7] [db:pir]
6695942_c3_85	2408	5011	396	131	197	1.20E−15	[ln:spcps14e] [ac:x85787] [pn:ss-1,4-galactosyltransferase] [gn:cps14j] [fn:capsular
							polysaccharide synthesis] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae cps14 locus.] [le:9524] [re:10480] [di:direct]
6711083_f2_31	2409	5012	459	152	279	1.60E−24	[ac:p21977] [gn:gale] [or: streptococcus thermophilus ] [ec:5.1.3.2] [de:galactose 4-
							epimerase)] [sp:p21977] [db:swissprot]
6721011_c1_67	2410	5013	786	261	375	1.10E−34	[ac:p54456] [gn:yqek] [or: bacillus subtilis ] [de:hypothetical 21.3 kd protein in arod-
							comer intergenic region] [sp:p54456] [db:swissprot]
6734502_f1_2	2411	5014	1074	357	131	5.00E−06	[ln:pphplg] [ac:x80272] [gn:pprb] [or: pseudomonas putida ] [db:genpept-bct]
							[de: p.putida pprb gene.] [le:77] [re:973] [di:direct]
6765635_c2_55	2412	5015	1578	525	285	2.00E−45	[ac:s06097] [pn:type i site-specific deoxyribonuclease, cfra chain s:restriction
							endonuclease cfra, polypeptide s] [gn:hsds] [cl:type i site-specific deoxyribonuclease
							ecoa chain s] [or: citrobacter freundii ] [ec:3.1.21.3] [db:pir]
6765635_f3_25	2413	5016	1596	531	251	2.10E−18	[ln:sehsdrms] [ac:y11005] [pn:styski methylase] [gn:hsds] [or: salmonella enterica ]
							[db:genpept-bct] [de: s.enterica hsdr, hsdm and hsds genes.] [le:2206] [re:3969]
							[di:direct]
6775262_c2_3	2414	5017	225	74	232	3.90E−19	[ac:p03764] [or:bacteriophage lambda] [de:hypothetical protein orf401] [sp:p03764]
							[db:swissprot]
678125_f3_11	2415	5018	189	62	293	5.20E−26	[ac:s49404:s38206] [pn:h+-transporting atp synthase, chain c] [gn:atpc]
							[or: streptococcus pneumoniae ] [ec:3.6.1.34] [db:pir]
679592_c3_54	2416	5019	1035	344	1228	4.30E−125	[ln:lppyrbsop] [ac:z54240] [pn:glutaminase of carbamoyl-phosphate synthase]
							[gn:pyraa] [or: lactobacillus plantarum ] [db:genpept-bct] [ec:6.3.5.5] [de: l.plantarum
							pyrimidine biosynthetic operon (pyrr, pyrb, pyrc,pyraa, pyrab, pyrd, pyrf, and pyre)
6814382_f3_16	2417	5020	285	94	108	2.10E−06	[ln:stu93029] [ac:u93029] [pn:amphipathic pore-forming peptide precursor] [gn:thma]
							[or: streptococcus thermophilus ] [db:genpept-bct] [de: streptococcus thermophilus
							thermophilin 13 operon; amphipathicpore-forming peptide precursor (thma), enhancer
							peptide
6815680_c2_25	2418	5021	315	104	64	0.87	[ln:cek07a12] [ac:z81098] [pn:f39h2.3] [or: caenorhabditis elegans ] [db:genpept-inv]
							[de:caenorhabditis elegans cosmid k07a12, complete sequence.] [nt:similarity to
							s.pombe hypothetical protein] [le:<1:106:325:535] [re:35:190:419:702] [di:directjoin]
6820337_f3_55	2419	5022	1908	635	1787	2.50E−184	[ac:b69633] [pn:1-glutamine-d-fructose-6-phosphate amidotransferase glms] [gn:glms]
							[or: bacillus subtilis ] [db:pir]
682199_c1_9	2420	5023	502	167	459	1.30E−43	[ac:c69830] [pn:glucanase homolog yhfe] [gn:yhfe] [or: bacillus subtilis ] [db:pir]
6834838_c2_7	2421	5024	435	144	494	2.60E−47	[ac:p04969] [gn:rpsk] [or: bacillus subtilis ] [de:30s ribosomal protein s11 (bs11)]
							[sp:p04969] [db:swissprot]
6837692_c3_35	2422	5025	582	193	789	1.40E−78	[ln:spu09239] [ac:u09239] [gn:cps19fd] [or: streptococcus pneumoniae ] [db:genpept-
							bct] [de: streptococcus pneumoniae type 19f capsular polysaccharidebiosynthesis
							operon, (cps19fabcdefghijklmno) genes, complete cds,and alia gene, partial cds.]
6839087_f1_6	2423	5026	474	157	71	0.7	[ac:d69830] [pn:hypothetical protein yhff] [gn:yhff] [or: bacillus subtilis ] [db:pir]
6839212_f1_2	2424	5027	768	255	1016	1.30E−102	[ac:p37282] [gn:groel] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[de:60 kd chaperonin (protein cpn60) (groel protein)] [sp:p37282] [db:swissprot]
6839715_f3_47	2425	5028	1428	475	1685	1.60E−173	[ac:q46130] [gn:abga] [or: clostridium longisporum ] [ec:3.2.1.86] [de:6-phospho-beta-
							glucosidase,] [sp:q46130] [db:swissprot]
6844187_f2_9	2426	5029	711	236	144	4.70E−09	[ln:spu65899] [ac:u65899] [pn:m protein] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes m protein gene, partial cds.] [le:<1] [re:
6844215_c1_15	2427	5030	225	74	104	2.10E−05	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
6845260_f3_25	2428	5031	987	328	1019	6.10E−103	[ac:p37465] [gn:mets] [or: bacillus subtilis ] [ec:6.1.1.10] [de:(metrs)] [sp:p37465]
							[db:swissprot]
6846882_c1_65	2429	5032	342	113	203	1.80E−16	[ac:q07211] [gn:scrk] [or: streptococcus mutans ] [ec:2.7.1.4] [de:fructokinase,]
							[sp:q07211] [db:swissprot]
6847840_f2_7	2430	5033	429	142	291	8.50E−26	[ac:p12039] [gn:purd] [or: bacillus subtilis ] [ec:6.3.4.13] [de:ribonucleotide synthetase]
							(phosphoribosylglycinamide synthetase)] [sp:p12039] [db:swissprot]
6852008_c3_15	2431	5034	1815	604	2962	0	[ac:p10564] [gn:hexa] [or: streptococcus pneumoniae ] [de:dna mismatch repair protein
							hexa] [sp:p10564] [db:swissprot]
6852301_f2_16	2432	5035	372	123	211	2.50E−17	[ac:p45808:p77478] [gn:yban] [or: escherichia coli ] [de:hypothetical 14.8 kd protein in
							pric-apt intergenic region] [sp:p45808:p77478] [db:swissprot]
6900212_f3_57	2433	5036	255	84	376	8.30E−35	[ln:spdnagcpo] [ac:y11463] [gn:cpoa] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae dnag, rpod, cpoa genes and orf3 and orf5.] [le:2160]
							[re:3176] [di:direct]
6902137_f2_14	2434	5037	258	85	73	0.093	[ac:a34832] [pn:tat-binding protein-1] [cl:ftsh/sec18/cde48-type atp-binding domain
							homology] [or: homo sapiens ] [sr:, man] [db:pir]
6906302_f1_6	2435	5038	366	121	83	0.00093	[ln:d78257] [ac:d78257] [pn:bacb] [gn:bacb] [or: enterococcus faecalis ] [sr: enterococcus
							faecalis plasmid:pyi17 dna] [db:genpept-bct] [de: enterococcus faecalis plasmid pyi17
							genes for baca, bacb, orf3,orf4,orf5,orf6, orf7, orf8, orf9, orf10, orf11,partia
6914218_f2_21	2436	5039	1338	445	2246	5.80E−233	[ln:spu33315] [ac:u33315] [pn:histidine protein kinase] [gn:comd] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae orf1 gene, partial cds,
							competencestimulating peptide precursor (comc), histidine protein kinase(comd) and
							respon
6914712_f2_21	2437	5040	477	158	123	4.80E−07	[ac:b41313] [pn:probabletransposase] [or: acetobacter pasteurianus ] [db:pir]
6914827_f3_61	2438	5041	264	87	74	0.0084	[ln:apu18449] [ac:u18449] [pn:cytochrome b] [gn:cylb] [or: mitochondrion
							arctocephalus pusillus pusillus ] [sr:south african fur seal] [db:genpept-mam]
							[de: arctocephalus pusillus cytochrome b (cylb) gene, mitochondrial geneencoding
6917253_f2_13	2439	5042	1890	629	79	0.038	[ln:hivu88757] [ac:u88757] [pn:gp120] [gn:env] [or:human immunodeticiency virus
							type 1] [db:genpept-vrl] [de:hiv-1 isolate tp95091 from ethiopia, gp120 (env) gene,
							partial cds.] [nt:v3 region] [le:<1] [re:
6917302_c3_34	2440	5043	888	295	605	4.50E−59	[ac:p30295] [gn:livh:liva] [or: salmonella typhimurium ] [de:livh (liv-1 protein h)]
							[sp:p30295] [db:swissprot]
6924180_c1_11	2441	5044	240	79	67	0.3	[ln:bmu47917] [ac:u47917] [pn:transposase] [or: bombyx mori ] [sr:silkworm]
							[db:genpept-inv] [de: bombyx mori mariner transposon bmmar1 transposase gene,
							completecds.] [le:144] [re:1184] [di:direct]
6929713_c3_28	2442	5045	942	313	313	4.00E−28	[ln:af035376] [ac:af035376] [pn:inner membrane lipoprotein] [gn:apbe] [fn:synthesis of
							the pyrimidine moiety of thiamine] [or: salmonella typhimurium ] [db:genpept-bct]
							[de: salmonella typhimurium inner membrane lipoprotein (apbe) gene, complete cds.]
							[nt:apb
6930437_f2_76	2443	5046	207	68	73	0.028	[ln:mus11m9] [ac:m29325] [or: mus musculus ] [sr: mus musculus domesticus (strain
							balb/c) dna, clone ba4] [db:genpept-rod] [de:mouse 11md-9 repetitive sequence.]
							[nt:orf1] [le:1429] [re:1995] [di:direct]
6931886_c2_37	2444	5047	375	124	73	0.14	[ac:p21457] [gn:rcv1] [or: bos taurus ] [sr:,bovine] [de:recoverin (p26)] [sp:p21457]
							[db:swissprot]
6931886_c3_27	2445	5048	327	108	70	0.022	[ac:g69918] [pn:hypothetical protein yopy] [gn:yopy] [or: bacillus subtilis ] [db:pir]
6931886_c3_66	2446	5049	327	108	77	0.24	[ln:yscsfp1aa] [ac:m63577] [gn:sfp1] [or: saccharomyces cerevisiae ] [sr: saccharomyces
							cerevisiae dna] [db:genpept-pln] [de: s.cerevisiae sfp1 gene, complete cds.] [le:320]
							[re:2356] [di:direct]
6931886_f1_1	2447	5050	327	108	66	0.065	[ac:g69918] [pn:hypothetical protein yopy] [gn:yopy] [or: bacillus subtilis ] [db:pir]
6931886_f3_10	2448	5051	327	108	65	0.5	[ac:p21457] [gn:rev1] [or: bos taurus ] [sr:,bovine] [de:recoverin (p26)] [sp:p21457]
							[db:swissprot]
6931886_f3_8	2449	5052	336	111	72	0.78	[ac:q57864] [gn:mj0421] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj0421] [sp:q57864] [db:swissprot]
6933512_f2_77	2450	5053	966	321	128	1.20E−05	[ln:lactnaabid] [ac:135176] [gn:abid1] [fn:phage abortive infection] [or: lactococcus
							lactis ] [sr: lactococcus lactis (strain i1964) dna] [db:genpept-bct] [de: lactococeus lactis
							transposase (tnase) and abid1 genes, completecds.] [le:1230] [re:2285] [di:dire
7031278_c2_14	2451	5054	342	113	150	2.50E−10	[ac:jc2110] [pn:tropomyosin-related protein:strp protein] [or: saccharomyces cerevisiae ]
							[db:pir]
7034451_f3_19	2452	5055	279	92	134	2.80E−08	[ac:q10525] [gn:mtcy427.27] [or: mycobacterium tuberculosis ] [ec:2.3.1.41] [de:(beta-
							ketoacyl-acp synthase 2) (kas 2)] [sp:q10525] [db:swissprot]
7036526_c1_30	2453	5056	195	64	68	3.20E−07	[ac:c64571] [pn:hypothetical protein hp0411] [or: helicobacter pylori ] [db:pir]
7039675_f1_2	2454	5057	255	84	75	0.017	[ln:u67523] [ac:u67523:177117] [pn: m.jannaschii predicted coding region mj0785.1]
							[gn:mj0785.1] [or: methanococcus jannaschii ] [db:genpept-bct] [de: methanococcus
							jannaschii section 66 of 150 of the complete genome.] [nt:brute force orf, identitied by
							gene
7039712_f3_7	2455	5058	246	82	76	0.045	[ac:i39974] [pn:serine proteinase] [cl:subtilisin:subtilisin homology] [or:bacillus sp.]
							[db:pir]
7053806_c1_47	2456	5059	2448	815	2803	5.50E−292	[ac:q48656] [gn:pepn] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:3.4.11.2] [de:(alanine aminopeptidase)] [sp:q48656] [db:swissprot]
7055431_c3_91	2457	5060	945	314	426	4.20E−40	[ac:c69986] [pn:conserved hypothetical protein ysna] [gn:ysna] [or: bacillus subtilis ]
							[db:pir]
7056275_f1_2	2458	5061	207	68	56	0.49	[ln:pumpol1] [ac:d12837] [pn:reverse transcriptase] [gn:pol] [or: petroselinum crispum ]
							[sr: petroselinum hortense dna] [db:genpept-pln] [de: petroselium hortense pol gene for
							reverse transcriptase, partialsequence.] [le:<1] [re:
7064638_f3_32	2459	5062	657	218	209	4.20E−17	[ln:lhpepign] [ac:z56283] [gn:orf2] [or: lactobacillus helveticus ] [db:genpept-bct]
							[de: l.helveticus pepi gene.] [le:1522] [re:2175] [di:direct]
7066542_c2_58	2460	5063	660	219	226	6.60E−19	[ln:axu22323] [ac:u22323] [pn:unknown] [or: acetobacter xylinum ] [db:genpept-bct]
							[de: acetobacter xylinum insertion sequence element is1238 orfa gene complete cds and
							orfb gene, partial cds.] [nt:orfb] [le:<585] [re:1154] [di:direct]
7066667_c3_83	2461	5064	297	98	54	0.67	[ac:b36359] [pn:vsg expression site-associated protein cs88] [cl:regulatory protein
							esag8c] [or: trypanosoma brucei ] [db:pir]
7066667_f1_2	2462	5065	660	219	229	3.20E−19	[ln:axu22323] [ac:u22323] [pn:unknown] [or: acetobacter xylinum ] [db:genpept-bct]
							[de: acetobacter xylinum insertion sequence element is1238 orfa gene,complete cds, and
							orfb gene, partial cds.] [nt:orfb] [le:<585] [re:1154] [di:direct]
7068758_f3_11	2463	5066	189	62	56	0.49	[ac:h64559] [pn:conserved hypothetical secreted protein hp0320] [cl:conserved
							hypothetical sccreted protein hp0320] [or: helicobacter pylori ] [db:pir]
7070313_c2_91	2464	5067	3789	1262	2724	1.70E−297	[ln:d78258] [ac:d78258] [pn:alkaline amylopullulanase] [or:bacillus sp.] [sr:bacillus sp.
							(strain:ksm-1378) dna] [db:genpept-bct] [de:bacilius sp. dna for alkaline
							amylopullulanase, complete cds.] [le:145] [re:5961] [di:direct]
7070443_f2_5	2465	5068	696	231	608	2.20E−59	[ac:p46536] [or: bacilius caldolyticus ] [de:hypothetical 27.6 kd protein in pyrab-pyrd
							intergenic region (orf2)] [sp:p46536] [db:swissprot]
7073299_c1_19	2466	5069	1303	434	147	3.00E−07	[ac:p27850] [gn:yign] [or: escherichia coli ] [de:(o475)] [sp:p27850] [db:swissprot]
7073887_f3_11	2467	5070	264	88	104	5.60E−06	[ln:af020798] [ac:af020798] [pn:putative host cell surface-exposed lipoprotein]
							[or: streptococcus thermophilus bacteriophage tp-j34] [db:genpept] [de: streptococcus
							thermophilus bacteriophage lysogeny module, integrasehomolog (int), putative host cell
							surf
7073937_f1_8	2468	5071	1134	377	1167	1.30E−118	[ac:p17921:p94539] [gn:phes] [or: bacillus subtilis ] [ec:6.1.1.20] [de:-trna ligase alpha
							chain) (phcrs)] [sp:p17921:p94539] [db:swissprot]
7078407_c2_31	2469	5072	354	117	423	8.70E−40	[ac:p16680] [gn:phna] [or: escherichia coli ] [de:phna protein] [sp:p16680]
7081341_c1_17	2470	5073	402	133	266	3.80E−23	[ac:p37686] [gn:yiay] [or: escherichia coli ] [de:hypothetical 40.2 kd protein in avta-selb
							intergenic region (f382)] [sp:p37686] [db:swissprot]
7081662_c3_58	2471	5074	894	297	598	2.50E−58	[ac:g69657] [pn:trna isopentenylpyrophosphate transferase miaa] [gn:miaa] [or: bacillus
							subtilis ] [db:pir]
7084500_f2_18	2472	5075	183	60	62	0.78	[ac:q49398] [gn:glf:mg137] [or: mycoplasma genitalium ] [ec:5.4.99.9] [de:udp-
							galactopyranose mutase,] [sp:q49398] [db:swissprot]
7116313_f2_32	2473	5076	1011	336	485	2.30E−46	[ac:c69763] [pn:ferrichrome abc transporter (permease) homolog yclo] [gn:yclo]
							[or: bacillus subtilis ] [db:pir]
7128390_c3_44	2474	5077	186	61	131	7.60E−09	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
7148578_f1_13	2475	5078	447	148	400	2.40E−37	[ac:d69999] [pn:conserved hypothetical protein ytqa] [gn:ytqa] [or: bacillus subtilis ]
							[db:pir]
7151588_c2_51	2476	5079	285	94	75	0.016	[ac:s52654:s49028] [pn:cold acclimation protein lti30] [gn:lti30] [or: arabidopsis
							thaliana ] [sr:, mouse-car cress] [db:pir]
7210092_c2_11	2477	5080	885	294	296	2.50E−26	[ac:f69777] [pn:conserved hypothetical protein yded] [gn:yded] [or: bacillus subtilis ]
							[db:pir]
7221006_c2_52	2478	5081	474	157	632	6.20E−62	[ac:c70015] [pn:gmp reductase homolog yumd] [gn:yumd] [or: bacillus subtilis ] [db:pir]
7224063_c3_48	2479	5082	219	72	104	1.00E−05	[ln:bsz75208] [ac:z75208] [pn:hypothetical protein] [gn:ysoc] [or: bacillus subtilis ]
							[db:genpept-bct] [de: b.subtilis genomic sequence 89009bp.] [nt:unknown function;
							putative] [le:80592] [re:81206] [di:complement]
7230308_f1_1	2480	5083	996	331	466	8.70E−49	[ac:c69521] [pn:2-nitropropane dioxygenase (ncd2) homolog] [or: archaeoglobus
							fulgidus ] [db:pir]
7234591_f1_4	2481	5084	324	107	54	0.68	[ac:b42056] [pn:hypothetical protein g6:ribosomal protein s12-related hypothetical
							protein] [or: mitochondrion leishmania tarentolae ] [db:pir]
7236385_f1_13	2482	5085	321	106	75	0.0066	[ac:a69985] [pn:hypothetical protein ysha] [gn:ysha] [or: bacillus subtilis ] [db:pir]
7239692_f2_1	2483	5086	192	63	82	0.0012	[ln:mtv003] [ac:a1008883] [pn:hypothetical protein mtv003.12] [gn:mtv003.12]
							[or: mycobacterium tuberculosis ] [db:genpept-bct] [de: mycobacterium tuberculosis
							sequence v003.] [nt:mtv003.12, unknown, len:87 aa] [le:10108] [re:10371] [di:direct]
7241032_f3_4	2484	5087	567	188	194	1.60E−15	[ac:c69895] [pn:conserved hypothetical protein yoaa] [gn:yoaa] [or: bacillus subtilis ]
							[db:pir]
7242137_f2_24	2485	5088	687	228	416	4.80E−39	[ln:cbaj2527] [ac:aj002527] [pn:orfx] [gn:orfx] [fn:putative transaldolase (37.4%
							identity to talc] [or: clostridium beijerinckii ] [db:genpept-bct] [de: clostridium
							beijerinckii glucitol transport gene system.] [le:1833] [re:2513] [di:direct]
7243800_f3_18	2486	5089	915	304	131	4.40E−06	[ac:p44741] [gn:teha:hi0511] [or: haemophilus influenzae ] [de:tellurite resistance
							protein teha homolog] [sp:p44741] [db:swissprot]
7245425_f1_9	2487	5090	642	213	61	0.54	[ac:s75007] [pn:hypothetical protein ss11922] [or:synechocystis sp.] [sr:pcc 6803, , pcc
							6803] [sr:pcc 6803, ] [db:pir]
7275087_f2_22	2488	5091	561	186	418	3.00E−39	[ac:e70045] [pn:two-component response regulator [yvqe] homolog yvqc] [gn:yvqc]
							[or: bacillus subtilis ] [db:pir]
7275683_c3_8	2489	5092	195	64	60	0.62	[ln:cicos2] [ac:z79640] [pn:cos2.3] [or: ciona intestinalis ] [db:genpept-inv] [de: ciona
							intestinalis dna sequence from cosmid cos2.] [le:20349:20988:21282]
							[re:20665:21140:21441] [di:complementjoin]
7312643_c1_28	2490	5093	288	95	71	0.11	[ac:p31706] [gn:outk] [or: erwinia carotovora ] [de:outk)] [sp:p31706] [db:swissprot]
78192_f1_17	2491	5094	405	134	52	0.5	[ac:b69544] [pn:hypothetical protein af2354] [or: archaeoglobus fulgidus ] [db:pir]
782086_f2_33	2492	5095	669	222	603	7.40E−59	[ac:d69763] [pn:ferrichrome abc transporter (atp-binding p) homolog yclp] [gn:yclp]
							[or: bacillus subtilis ] [db:pir]
782917_c2_59	2493	5096	1854	617	889	3.60E−89	[ac:p18158] [gn:glpd] [or: bacillus subtilis ] [ec:1.1.99.5] [de:aerobic glycerol-3-
							phosphate dehydrogenase,] [sp:p18158] [db:swissprot]
783563_f2_28	2494	5097	882	293	180	3.00E−12	[ac:jc6007] [pn:transcriptional activator plcr] [gn:plcr] [or: bacillus thuringiensis ]
							[db:pir]
787806_c3_33	2495	5098	195	64	50	0.28	[ln:af014795] [ac:af014795] [pn:cytochrome p450 30] [gn:cyp 30] [or: mercenaria
							mercenaria] [sr:northern quahog] [db:genpept-inv] [de: mercenaria mercenaria
							cytochrome p450 30 (cyp 30) mrna, completecds.] [le:81] [re:1628] [di:direct]
788906_c3_110	2496	5099	1512	503	345	1.70E−31	[ln:xaiedh1b] [ac:x84038] [pn:transposase] [or: xanthobacter autotrophicus ] [db:genpept-
							bct] [de: x.autotrophicus insertion element and dh1b gene.] [nt:putative] [le:127]
							[re:1482] [di:direct]
789062_f2_8	2497	5100	864	287	166	8.80E−12	[ln:spu89711] [ac:u89711] [pn:pspa] [gn:pspa] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae pneumococcal surface protein a
							pspa(pspa) gene, complete cds.] [nt:pneumococcal surface protein a; gram positive]
							[le:81] [re:2042] [
789175_c1_21	2498	5101	303	100	386	7.30E−36	[ln:sthsth] [ac:y11213] [gn:hsth] [or: streptococcus thermophilus ] [db:genpept-bct]
							[de: s.thermophilus hsth gene.] [le:1543] [re:1818] [di:direct]
790_f3_35	2499	5102	288	95	0.375		[ac:s75589:s74533:s74837:s74924:s75040:s75118:s75489;s76373:s76470]
							[pn:transposase] [or:synechocystis sp.] [sr:pcc 6803, , pcc6803] [sr:pcc6803, ] [db:pir]
792812_f2_35	2500	5103	882	293	410	2.10E−38	[ln:ecu74302] [ac:u74302] [pn:5,10-methylenetetrahydrofolate reductase] [gn:metf]
							[or: erwinia carotovora ] [db:genpept-bct] [de: erwinia carotovora oxidative stress
							transcriptional regulator(oxyr) and 5,10-methylenetetrahydrofolate reductase (metf)
							genes,co
7951_f2_6	2501	5104	585	194	240	2.20E−20	[ac:q57127:005062] [gn:hi1453] [or: haemophilus influenzae ] [de:hypothetical protein
							hi1453 precursor] [sp:q57127:o05062] [db:swissprot]
799193_c2_56	2502	5105	1359	452	618	1.90E−60	[ac:q45400] [gn:celb] [or: bacillus stearothermophilus ] [de:permease iic component]
							(phosphotransferase enzyme ii, c component)] [sp:q45460] [db:swissprot]
808377_f2_11	2503	5106	363	120	499	7.70E−48	[ln:smu88582] [ac:u88582] [pn:ylxm] [gn:ylxm] [fn:unknown] [or: streptococcus
							mutans ] [db:genpept-bct] [de: streptococcus mutans sat operon:putative glycinebetaine-
							bindingprotein prox (prox) gene, partial cds, ylxm (ylxm) gene, completecds and signal
							recog
808442_c3_63	2504	5107	510	169	237	1.20E−18	[ac:g69708] [pn:chromosome segregation smc protein homolg smc] [gn:smc]
							[or: bacillus subtilis ] [db:pir]
812952_c1_138	2505	5108	228	75	69	0.028	[ac:p54323] [gn:sdh4:sdhd] [or: chondrus crispus ] [sr:carragheen] [de:dehydrogenase,
							subunit iv)] [sp:p54323] [db:swissprot]
813785_f1_14	2506	5109	708	235	352	2.90E−32	[ac:q54430] [gn:scrr] [or: streptococcus mutans ]
							subunit iv)] [sp:p54323] [db:swissprot]
81631_f3_16	2507	5110	210	69	54	0.064	[ac:js0723] [pn:cytochrome p450 alk5-a, alkane-inducible] [gn:alk5-a] [cl:cytochrome
							p450] [or: candida maltosa ] [db:pir]
820437_f2_24	2508	5111	456	151	160	2.40E−11	[ac:q07606] [gn:bcgib] [or: bacillus coagulans ] [ec:3.1.21.—] [de:restriction enzyme bgci
							bcta subunit,] [sp:q07606] [db:swissprot]
820887_f3_45	2509	5112	333	110	60	0.23	[ac:p55846] [or: cancer pagurus ] [sr:,rock crab] [de:molt-inhibiting hormone (mih)]
							[sp:p55846] [db:swissprot]
823337_c1_21	2510	5113	702	233	352	2.90E−32	[ac:p39760] [gn:ykqb] [or: bacillus subtilis ] [de:hypothetical 24.3 kd protein in kinc-
							adec intergenic region (orf4)] [sp:p39760] [db:swissprot]
823427_f1_7	2511	5114	246	81	109	3.20E−06	[ln:sesirr] [ac:x99128] [pn:putative iron dependant repressor] [gn:sirr]
							[or: staphylococcus epidermidis ] [db:genpept-bct] [de: s.epidermidis sirr gene.] [le:14]
							[re:658] [di:direct]
828181_f2_17	2512	5115	453	150	334	9.80E−30	[ac:p11552] [gn:fuci] [or: escherichia coli ] [ec:5.3.1.—] [de:1-fucose isomerase,]
							[sp:p11552] [db:swissprot]
832657_f1_8	2513	5116	888	295	646	2.00E−63	[ac:p42063] [gn:appc] [or: bacillus subtilis ] [de:oligopeptide transport permease protein
							appc] [sp:p42063] [db:swissprot]
835328_f3_36	2514	5117	228	75	68	0.036	[ln:mmucasgp4] [ac:u06749] [gn:psmc] [or: rattus norvegicus ] [sr:rat] [db:genpept-rod]
							[de: rattus norvegicus fisher 344 pre-sialomucin complex (psmc) mrna,repeat c, partial
							cds.] [nt:repeat sequence c] [le:<1] [re:
835887_c3_54	2515	5118	567	188	235	7.30E−20	[ac:f70023] [pn:hypothetical protein yutd] [gn:yutd] [or: bacillus subtilis ] [db:pir]
836562_c1_23	2516	5119	270	89	136	2.30E−09	[ac:p24022] [gn:lafa:lat] [or: lactobacillus acidophilus ] [de:bacteriocin lactacin f
							precursor] [sp:p24022] [db:swissprot]
837753_c2_73	2517	5120	1035	344	486	1.80E−46	[ac:p44303] [gn:arog:hi1547] [or: haemophilus influenzae ] [ec:4.1.2.15] [de:d-arabino-
							heptulosonate 7-phosphate synthase)] [sp:p44303] [db:swissprot]
839212_f1_1	2518	5121	897	298	423	8.70E−40	[ac:p26832] [or: clostridium perfringens ] [de:hypothetical protein in nagh 5′region (orfa)
							(fragment)] [sp:p26832] [db:swissprot]
8467_f3_9	2519	5122	1539	512	214	2.70E−15	[ln:spu89711] [ac:u89711] [pn:pspa] [gn:pspa] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae pneumococcal surface protein a
							pspa(pspa) gene, complete cds.] [nt:pneumococcal surface protein a; gram positive]
							[le:81] [re:2042]
85802_c3_39	2520	5123	777	258	284	4.70E−25	[ac:b70039] [pn:hypothetical protein yvfs] [or: bacillus subtilis ] [db:pir]
860803_c3_13	2521	5124	240	79	67	0.65	[ln:scylr139c] [ac:z73311] [gn:nhal] [or: saccharomyces cerevisiae ] [sr:baker's yeast]
							[db:genpept-pln] [de: s.cerevislae chromosome xii reading frame orf ylr139c.] [nt:orf
							ylr138w] [le:<1] [re:2526] [di:direct]
864057_c3_45	2522	5125	480	159	459	1.30E−43	[ac:b69589] [pn:argininosuccinate synthase argg] [gn:argg] [or: bacillus subtilis ] [db:pir]
869687_f3_56	2523	5126	606	201	830	6.50E−83	[ac:p72500] [or: streptococcus pneumoniae ] [ec:1.11.1.—] [de:probable thiol peroxidase,]
							[sp:p72500] [db:swissprot]
87693_c2_72	2524	5127	702	233	97	9.40E−05	[ln:d78257] [ac:d78257] [pn:orf8] [gn:orf8] [or: enterococcus faecalis ] [sr: enterococcus
							faecalis plasmid:pyi17 dna] [db:genpept-bct] [de: enterococcus faecalis plasmid pyi17
							genes for baca, bacb, orf3,orf4, orf5, orf6, orf7, orf8, orf9, orf10, orf11,partia
882151_c3_69	2525	5128	492	163	67	0.6	[ac:s67141:s67145] [pn:hypothetical protein yor248w:hypothetical protein o5276]
							[or: saccharomyces cerevisiae ] [db:pir] [mp:15r]
886000_c1_34	2526	5129	363	120	87	0.012	[ac:s61993:s66874:s72142] [pn:probable membrane protein yor009w:hypothetical
							protein o2549:hypothetical protein unb487] [or: saccharomyces cerevisiae ] [db:pir]
							[mp:15r]
898525_f1_12	2527	5130	468	155	233	1.20E−19	[ac:a48897] [pn:6′-n-acetyItransferase-ic,:aac(6′)-ic:aminoglycoside resistance protein]
							[or: serratia marcescens ] [ec:2.3.1.—] [db:pir]
900026_f2_32	2528	5131	261	86	120	1.10E−07	[ac:p27624:q54467] [gn:reca] [or: streptococcus mutans ] [de:reca protein (fragments)]
							[sp:p27624:q54467] [db:swissprot]
900252_c3_112	2529	5132	1263	420	1294	4.40E−132	[n:ehy13922] [ac:y13922:y15222] [gn:ftsz] [or: enterococcus hirae ] [db:genpept-bct]
							[de: enterococcus hirae mrar, pbp3s, mray, murd, murg, ftsq and ftsagenes, mraw, yllc
							and ftsz partial genes.] [le:10311] [re:
915937_f2_20	2530	5133	498	165	621	9.10E−61	[ac:p02357] [gn:rpse] [bacillus stearothermophilus] [de:30s ribosomal protein s5
							(bs5)] [sp:p02357] [db:swissprot]
917192_f1_1	2531	5134	201	66	116	1.70E−06	[ac:p20709] [gn:int] [or:bacteriophage 154a] [de:integrase] [sp:p20709] [db:swissprot]
94812_c1_23	2532	5135	1233	410	233	3.00E−17	[ln:spu83667] [ac:u83667] [pn:macrolide-efflux determinant] [gn:mefe]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae
							macrolide-efflux determinant (mefe) gene,complete cds.] [nt:mefe] [le:1] [re:1218]
95052_c2_48	2533	5136	228	75	70	0.025	[ac:p17910] [gn:trak] [or: escherichia coli ] [de:trak protein] [sp:p17910] [db:swissprot]
953265_f3_96	2534	5137	246	81	82	0.0012	[ac:s62853:s73575] [pn:hypothetical protein d02_orf122b] [or: mycoplasma
							pneumoniae ] [sr:atcc 29342, , atcc 29342] [sr:atcc 29342] [sr:atcc 29342, ] [db:pir]
953579_c2_12	2535	5138	230	76	56	0.085	[ln:musprimp] [ac:d00570:j00614] [or: mus musculus ] [sr:mouse (male), cdna to mrna]
							[db:genpept-rod] [de:mouse putative primordial protein transcript.] [nt:open reading
							frame (251 aa)] [le:442] [re:1194] [di:direct]
960452_c1_167	2536	5139	351	116	53	0.85	∂ln:s83288] [ac:s83288] [pn:ret1 alpha subunit] [gn:ret1] [or:rattus sp.] [sr:rattus sp.
							retinal pigment epithelium cells] [db:genpept-rod] [de:ret1=ret1 alpha subunit [rats,
							retinal pigment epithelium cells,mrna partial, 177 nt].] [nt:sodium channel/hnav
960937_f3_59	2537	5140	201	67	86	0.00045	[ac:p23855] [gn:pspc] [or: escherichia coli ] [de:phage shock protein c] [sp:p23855]
							[db:swissprot]
962501_c3_35	2538	5141	1749	582	1698	6.80E−175	[ac:d69591] [pn:aspartyl-trna synthetase asps] [gn:asps] [or: bacillus subtilis ] [db:pir]
9631_f3_31	2539	5142	1314	437	1474	3.70E−151	[ac:p27148] [gn:secy] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[de:preprotein translocase secy subunit] [sp:p27148] [db:swissprot]
96936_f3_22	2540	5143	2337	778	1838	9.90E−190	[ac:p22093] [gn:pepx] [or: lactococcus lactis ] [sr:,subspcremoris: streptococcus
							cremoris ] [ec:3.4.14.11] [de:peptidase) (x-prolyl-dipeptidyl aminopeptidase) (x-pdap)]
							[sp:p22093] [db:swissprot]
969538_c2_14	2541	5144	741	246	970	9.50E−98	[ln:af030361] [ac:af030361] [pn:transposase] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae strain sp-va92 glucose-1-
							phosphatethymidyl transferase (cpsl) gene, partial cds; anddtdp-4-keto-6-deoxyglucose-
							3,5-epimerase (cpsm),dt
969635_c3_50	2542	5145	612	203	670	5.80E−66	[ac:b69997] [pn:conserved hypothetical protein ytmq] [gn:ytmq] [or: bacillus subtilis ]
							[db:pir]
970260_f1_7	2543	5146	336	111	159	8.40E−12	[ac:p34630] [gn:zk353.7] [or: caenorhabditis elegans ] [de:hypothetical 27.3 kd protein
							zk353.7 in chromosome iii] [sp:p34630] [db:swissprot]
972827_c3_69	2544	5147	570	189	489	8.90E−47	[ac:p37470] [gn:spovc:pth] [or: bacillus subtilis ] [ec:3.1.1.29] [de:sporulation protein c)]
							[sp:p37470] [db:swissprot]
9765627_f1_1	2545	5148	399	132	95	0.00014	[ac:p41479] [or: autographa californica nuclear polyhedrosis virus] [sr:,acmnpv]
							[de:hypothetical 24.1 kd protein in lef4-p33 intergenic region] [sp:p41479]
							[db:swissprot]
976577_c3_86	2546	5149	1974	657	889	3.60E−89	[ac:p37484] [gn:yybt] [or: bacillus subtilis ] [de:hypothetical 74.3 kd protein in rpli-cotf
							intergenic region] [sp:p37484] [db:swissprot]
9767583_f1_2	2547	5150	1332	443	71	0.17	[ac:s62084] [pn:in-like protein precursor (clone enn74.1)] [cl:m5 protein]
							[or: streptococcus pyogenes ] [db:pir]
9767800_c1_35	2548	5151	387	128	149	1.60E−10	[ac:p45024] [gn:hi1080] [or: haemophilus influenzae ] [de:precursor] [sp:p45024]
							[db:swissprot]
9770443_c3_52	2549	5152	549	182	553	1.50E−53	[ln:af044978] [ac:af044978] [pn:attenuation regulatory protein] [gn:pyrr] [fn:uracil
							phosphoribosyltransferase] [or: enterococcus faecalis ] [db:genpept] [de: enterococcus
							faecalis pyr operon:attenuation regulatory protein(pyrr) and putative uracil permease
9775217_c1_49	2550	5153	1215	404	1857	9.60E−192	[ln:spdnaarg] [ac:af000658] [pn:beta subunit of dna polymerase iii] [gn:spdnan]
							[or: streptococcus pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae r801
							trna-arg gene, partial sequence, andputative serine protease (sphtra), spspoj (spspoj),
9776915_f1_1	2551	5154	186	61	211	2.50E−17	[ln:spadea] [ac:z71552] [pn:abc protein] [gn:adec] [or: streptococcus pneumoniae ]
							[db:genpept-bct] [de: streptococcus pneumoniae adccba operon.] [le:20] [re:721]
							[di:direct]
978562_c3_221	2552	5155	192	63	58	0.035	[ac:p19200] [or:commelina yellow mottle virus] [sr:,coymv] [de:hypothetical 23 kd
							protein (orf1)] [sp:p19200] [db:swissprot]
9792015_f2_32	2553	5156	408	135	150	7.40E−11	[ac:p37542] [gn:yaba] [or: bacillus subtilis ] [de:hypothetical 14.1 kd protein in xpac-
							abrb intergenic region] [sp:p37542] [db:swissprot]
9792337_c2_59	2554	5157	885	294	946	3.30E−95	[ac:p37518] [gn:yyaf] [or: bacillus subtilis ] [de:region] [sp:p37518] [db:swissprot]
9797961_f2_6	2555	5158	1101	366	921	1.50E−92	[ac:c33496] [pn:hisc homolog] [or: bacillus subtilis ] [db:pir]
9798587_f1_4	2556	5159	816	271	116	3.50E−05	[ac:p55548] [gn:y41h] [or:rhizobium sp] [sr:ngr234,] [de:hypothetical 22.4 kd protein
							y41h] [sp:p55548] [db:swissprot]
980277_c3_12	2557	5160	378	125	507	1.10E−48	[ac:p45293] [gn:hi1647] [or: haemophilus influenzae ] [de:hypothetical protein hi1647]
							[sp:p45293] [db:swissprot]
980342_f1_3	2558	5161	672	224	160	9.90E−11	[ac:p31847:p37951] [gn:ypua] [or: bacillus subtilis ] [de:hypothetical 31.3 kd protein in
							lysa-ppib intergenic region (orfx19)] [sp:p31847:p37951] [db:swissprot]
9804766_f2_15	2559	5162	255	84	65	0.22	[ac:q03629] [gn:ym1079w] [or: saccharomyccs cerevisiae ] [sr:,baker's yeast]
							[de:hypothetical 22.5 kd protein in tubi-cpr3 intergenic region] [sp:q03629]
							[db:swissprot]
9807962_c1_54	2560	5163	1224	407	344	6.70E−31	[ac:p45861] [gn:ywja] [or: bacillus subtilis ] [de:hypothetical abc transporter atp-binding
							protein in acda 5′region] [sp:p45861] [db:swissprot]
9808200_c2_36	2561	5164	201	66	109	4.90E−06	[ac:p37543] [gn:yabb] [or: bacillus subtilis ] [de:hypothetical 28.3 kd protein in xpac-
							abrb intergenic region] [sp:p37543] [db:swissprot]
9808468_c2_37	2562	5165	702	233	143	1.40E−08	[ln:lpatovgns] [ac:x94434] [pn:plnu] [gn:plnu] [fn:unknown] [or: lactobacillus
							plantarum ] [db:genpept-bct] [de: l.plantarum pln[a,h,c,d,e,f,g,h,i,j,k,l,m,n,o,p,r,s,t,u,v]
							genesand orf1.] [nt:putative] [le:15253] [re:15921] [di:direct]
9816255_c3_34	2563	5166	279	92	70	0.2	[ac:c69397] [pn:hypothetical protein af1180] [or: archaeoglobus fulgidus ] [db:pir]
9819842_f1_1	2564	5167	591	196	205	1.10E−16	[ac:p05332] [gn:p20] [or: bacillus licheniformis ] [de:hypothetical p20 protein]
							[sp:p05332] [db:swissprot]
9822138_f2_5	2565	5168	1035	344	150	5.20E−13	[ln:tpu70661] [ac:u70661] [pn:mccf-like protein] [or: treponema pallidum] [db:genpept-
							bct] [de: treponema pallidum gtp-binding protein, mccf-like protein andatp-dependent
							dna helicase (recg) genes, complete cds.] [le:1521] [re:2534] [di:direct]
9822530_f1_1	2566	5169	1593	530	735	7.60E−73	[ac:p36672] [gn:treb] [or: escherichia coli ] [ec:2.7.1.69] [de(ec.2.7.1.69) (eii-tre)]
							[sp:p36672] [db:swissprot]
9824007_c2_47	2567	5170	363	120	92	0.00032	[ln:ecu82664] [ac:u82664] [or: escherichia coli ] [db:genpept-bct] [de: escherichia coli
							minutes 9 to 11 genomic sequence.] [nt:hypothetical protein] [le:133380] [re:134066]
							[di:direct]
9844776_f3_4	2568	5171	1041	347	99	0.11	[ac:p53753] [gn:ynro67c:n3547] [or: saccharomyces cerevisiae ] [sr:,baker's yeast]
							[de:precursor] [sp:p53753] [db:swissprot]
9845187_c1_27	2569	5172	273	90	94	1.10E−07	[ac:p47251] [gn:sers:mg005] [or: mycoplasma genitalium ] [ec:6.1.1.11] [de:seryl-trna
							synthetase, (serine--trna ligase) (serrs)] [sp:p47251] [db:swissprot]
984591_f2_35	2570	5173	243	80	66	0.48	[ac:s29851:s27760] [pn:protein kinase 6,] [cl:unassigned ser/thr or tyr-specific protein
							kinases:protein kinase homology] [or:glycine max] [sr:, soybean] [ec:2.7.1.—] [db:pir]
9849062_c2_56	2571	5174	282	93	304	8.20E−26	[ac:g69708] [pn:chromosome segregation smc protein homolog smc] [gn:smc]
							[or: bacillus subtilis ] [db:pir]
9859758_c2_15	2572	5175	255	84	103	7.10E−06	[ln:ehy14328] [ac:y14328] [pn:3el protein] [or: entamoeba histolytica] [db:genpept-inv]
							[de: entamoeba histolytica mrna for 3el protein.] [le:32] [re:418] [di:direct]
9869086_f1_2	2573	5176	1011	336	108	0.0023	[ac:p44896] [gn:hi0839] [or: haemophilus influenzae ] [de:hypothetical protein hi0839]
							[sp:p44896] [db:swissprot]
9869686_f3_32	2574	5177	528	175	163	2.50E−11	[ac:p39301] [gn:sgat] [or: escherichia coli ] [de:sgat protein] [sp:p39301] [db:swissprot]
9877268_f1_12	2575	5178	1083	360	686	1.20E−67	[ac:d69682] [pn:gamma-glutamyl kinase prob] [gn:prob] [or: bacillus subtilis ] [db:pir]
9881277_f3_52	2576	5179	588	195	552	1.90E−53	[ac:p398I5] [gn:gid] [or: bacillus subtilis ] [de:gid protein (fragment)] [sp:p39815]
							[db:swissprot]
9881285_c2_49	2577	5180	234	77	115	3.80E−07	[ac:pq0452] [pn:extensin-like protein] [or: nicotiana alata ] [sr:, persian tobacco] [db:pir]
9882051_c2_32	2578	5181	261	86	65	0.24	[ac:jc5598] [pn:mucin] [gn:muc5a] [or: rattus norvegicus ] [sr:, norway rat] [db:pir]
9883252_f2_15	2579	5182	762	253	234	9.30E−20	[ac:q58813] [gn:mj1418] [or: methanococcus jannaschii ] [de:hypothetical protein
							mj1418] [sp:q58813] [db:swissprot]
9884550_c3_67	2580	5183	432	143	184	1.90E−14	[ln:spnana] [ac:x72967] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: s.pneumoniae nana gene.] [nt:orf2] [le:193] [re:495] [di:direct]
9884836_f1_46	2581	5184	1308	435	825	2.20E−82	[ac:p40739] [gn:bglp:n17c] [or: bacillus subtilis] [ec:2.7.1.69] [de:enzyme ii, abc
							component), (eii-bgl)] [sp:p40739] [db:swissprot]
9892879_c2_12	2582	5185	1184	394	82	0.11	[ln:d50453] [ac:d50453] [pn:multidrug resistance protein(emrb) homologue of]
							[gn:ycgd] [or: bacillus subtilis ] [sr: bacillus subtilis (strain:168 trpc2) dna] [db:genpept-
							bct] [de: bacillus subtilis dna for 25-36 degree region containing theamye-srfa region,
9897208_c2_26	2583	5186	624	207	360	4.10E−33	[ln:msgtcwpa] [ac:m15467] [pn:unknown protein] [or: mycobacterium tuberculosis ]
							[sr: mycobacterium tuberculosis (strain erdman) dna] [db:genpept-bct]
							[de: m.tuberculosis 65 kda antigen (cell wall protein a) gene.] [nt:orf f175; putative]
9900038_c1_36	2584	5187	1476	491	2154	3.20E−223	[ac:a27626] [pn:sucrose phosphorylase,] [cl:gtfa protein] [or: streptococcus mutans ]
							[ec:2.4.1.7] [db:pir]
9922882_c2_91	2585	5188	303	100	112	3.70E−06	[ln:spbc3d5] [ac:z95620] [pn:unknown] [gn:spbc3d5.14c] [or: schizosaccharomyces
							pombe ] [sr:fission yeast] [db:genpept-pln] [de: s.pombe chromosome ii cosmid c3d5.]
							[nt:spbc3d5.14c, unknown; partial; serine rich,] [le:31398] [re:
992887_c1_164	2586	5189	429	142	74	0.66	[ln:ab000353] [ac:ab000353] [pn:outer surface protein c] [or: borrelia tanukii ]
							[sr: borrelia tanukii (strain:hk501) dna] [db:genpept-bct] [de: borrelia tanukii dna for
							outer surface protein c, partial cds.] [nt:ospc] [le:<1] [re:
9929150_f2_28	2587	5190	351	116	95	5.00E−05	[ln:ehy14328] [ac:y14328] [pn:3el protein] [or: entamoeba histolylica ] [db:genpept-inv]
							[de: entamoeba histolylica mrna for 3el protein.] [le:32] [re:418] [di:direct]
9939437_c1_83	2588	5191	402	133	362	2.50E−33	[ac:s52544] [pn:is12 protein] [or: lactobacillus helveticus ] [db:pir]
994027_f3_38	2589	5192	639	212	475	2.70E−45	[ac:a70049] [pn:conserved hypothetical protein yvye] [gn:yvye] [or: bacillus subtilis ]
							[db:pir]
994053_c2_184	2590	5193	363	120	59	0.33	[ln:af031273] [ac:af031273] [pn:mhc class ii dr beta] [gn:hla-drb] [or: gorilla gorilla ]
							[sr:gorilla] [db:genpept-pri2] [de: gorilla gorilla mhc class ii dr beta hla-drb gene
							(drb1*0201allele), partial cds.] [le:<1] [re:
994086_f2_11	2591	5194	813	270	1237	4.80E−126	[ac:p26593] [gn:lacd] [or: lactococcus lactis ] [sr:,subsplactis: streptococcus lactis ]
							[ec:4.1.—.—] [de:tagatose 1,6-diphosphate aldolase,] [sp:p26593] [db:swissprot]
9942532_f2_21	2592	5195	204	67	62	0.18	[ln:tdmatk] [ac:z70187] [pn:maturase] [gn:matk] [or: chloroplast tabemaemontana
							divaricata] [sr: tabemaemontana divaricata ] [db:genpept-pln] [de: t.divaricata chloroplast
							matk gene.] [le:<1] [re:1545] [di:direct]
9942943_c1_31	2593	5196	228	75	64	0.25	[ac:s32107] [pn:85a protein] [or: mycobacterium leprae ] [db:pir]
9945327_f3_52	2594	5197	1137	378	1350	5.10E−138	[ac:q02418] [gn:mtld] [or: streptococcus mutans ] [ec:1.1.1.17] [de:mannitol-1-phosphate
							5-dehydrogenase,] [sp:q02418] [db:swissprot]
995437_f3_15	2595	5198	876	291	933	7.90E−94	[ac:p45134] [gn:tehb:hi1275] [or: haemophilus influenzae ] [de:tellurite resistance
							protein tehb homolog] [sp:p45134] [db:swissprot]
9955393_c2_27	2596	5199	486	161	814	3.20E−81	[ac:p23379] [gn:ung] [or: streptococcus pneumoniae ] [ec:3.2.2.—] [de:uracil-dna
							glycosylase,] [sp:p23379] [db:swissprot]
9956261_f2_20	2597	5200	300	99	65	0.59	[ln:celt13a10] [ac:u56963] [gn:t13a10.4] [or: caenorhabditis elegans ] [sr: caenorhabditis
							elegans strain=bristol n2] [db:genpept-inv] [de: caenorhabditis elegans cosmid t13a10.]
							[le:2740:3678] [re:2882:3912] [di:complementjoin]
9957962_f1_1	2598	5201	1323	440	740	2.20E−73	[ln:spu66846] [ac:u66846] [or: streptococcus pneumoniae ] [db:genpept-bct]
							[de: streptococcus pneumoniae cps3e and rpt pseudogenes, partialsequence, cps3c
							(cps3c), cps3p (cps3p) genes, partial cds.] [nt:orfs] [le:525] [re:1118] [di:complement]
9959677_c3_116	2599	5202	1275	424	160	7.60E−09	[ln:spu70055] [ac:u70055] [pn:macrolide-efflux protein] [gn:mef] [fn:effluxes
							erythromycin and other 14 and] [or: streptococcus pyogenes ] [db:genpept-bct]
							[de: streptococcus pyogenes macrolide-efflux protein (mef) gene, complete cds.]
							[nt:allele: a; tetbsr h
9962753_c3_98	2600	5203	618	205	1065	8.10E−108	[ln:spu90721] [ac:u90721] [pn:signal peptidase i] [gn:spi] [or: streptococcus
							pneumoniae ] [db:genpept-bct] [de: streptococcus pneumoniae signal peptidase i (spi)
							gene, completecds.] [nt:leader peptidase] [le:40] [re:654] [di:direct]
9963178_f3_6	2601	5204	417	138	74	0.19	[ac:a02453] [pn:hemoglobin beta chain, minor] [cl:globin:globin homology]
							[or: xenopus laevis ] [sr:, african clawed frog] [db:pir]
9970338_c1_35	2602	5205	1086	361	1703	2.00E−175	[ln:soorfs] [ac:z79691] [pn:regr] [gn:regr] [fn:putative transcription regulator, member
							galr] [or: streptococcus pneumoniae ] [db:genpept-bct] [de: s.pneumoniae yorf[a,b,c,d,e],
							ftsl, pbpx and regr genes.] [le:684] [re:1685] [di:direct]
9975958_c3_39	2603	5206	1059	352	1042	2.20E−105	[ac:p12043] [gn:purm:ath] [or: bacillus subtilis ] [ec:6.3.3.1] [de:(phosphoribosyl-
							aminoimidazole synthetase) (air synthase)] [sp:p12043] [db:swissprot]

SEQUENCE LISTING
The patent contains a lengthy “Sequence Listing” section. A copy of the “Sequence Listing” is available in electronic form from the USPTO
web site (http://seqdata.uspto.gov/sequence.html?DocID=06800744B1). An electronic copy of the “Sequence Listing” will also be available from the
USPTO upon request and payment of the fee set forth in 37 CFR 1.19(b)(3).

Claims

1. An isolated nucleic acid conprising a nucleotide sequence encoding a Streptococcus pneumoniae polypeptide, selected from the group consisting of SEQ ID NO; 2943, SEQ ID NO: 3124, SEQ ID NO: 3435, SEQ ID NO: 3472, SEQ ID NO: 3604, SEQ ID NO: 3888, SEQ ID NO: 4277, SEQ ID NO: 4317, and SEQ ID NO: 4714.

2. A recombinant expression vector comprising the nucleic acid of claim 1 operably linked to a transcription regulatory element.

3. A cell comprising the recombinant expression vector of claim 2.

4. An isolated nucleic acid comprising at least 20 consecutive nucleotides of a nucleic acid sequence selected from the group consisting of SEQ ID NO: 340, SEQ ID NO: 521, SEQ ID NO: 832, SEQ ID NO: 869, SEQ ID NO: 1674, and SEQ ID NO: 1714 wherein said nucleic acid encodes a Streptococcus pneumontae polypeptide or a fragment thereof.

5. A recombinant expression vector comprising the nucleic acid of claim 1 operably linked to a transcription regulatory element.

6. A cell comprising the recoxubinant expression vector of claim 5.

7. A probe comprising at least 20 consecutive nucleotides of a nucleic acid sequence selected from the group consisting of SEQ ID NO: 340, SEQ ID NO: 521, SEQ ID NO: 832, SEQ ID NO: 869, SEQ ID NO: 1674, and SEQ ID NO: 1714.

8. An isolated nucleic acid comprising at least 40 consecutive nucleotides, wherein the nucleic acid sequence is hybridizable under high stringency conditions to a nucleic acid sequence selected from the group consisting of SEQ ID NO: 340, SEQ ID NO: 521, SEQ ID NO: 832, SEQ ID NO: 869, SEQ ID NO; 1674, and SEQ ID NO: 1714.

9. An isolated nucleic acid consisting of a nucleic acid sequence selected from the group consisting of SEQ ID NO: 340, SEQ ID NO: 521, SEQ ID NO: 832, SEQ ID NO: 869, SEQ ID NO: 1001, SEQ ID NO: 1285, SEQ ID NO: 1674, SEQ ID NO: 1714 and SEQ ID NO: 2111.

10. A recombinant expression vector comprising the nucleic acid of claim 9 operably linked to a transcription regulatory element.

11. A cell comprising the recombinant expression vector of claim 10.

12. An isolated nucleic acid comprising at least 30 consecutive nucleotides of a nucleic acid sequence selected from the group consisting of SEQ ID NO: 340, SEQ ID NO: 521, SEQ ID NO: 832, SEQ ID NO: 869, SEQ ID NO: 1001, SEQ ID NO: 1285, SEQ ID NO: 1674, SEQ ID NO: 1714, and SEQ ID NO: 2111 wherein said nucleic acid encodes a Streptococcus pneumoniae polpeptide or a fragment thereof.

13. An isolated nucleic acid comprising at least 60 consecutive micleotides, wherein the nucleic acid sequence is hybridizable under high stringency conditions to a nucleic acid sequence selected from the group consisting of SEQ ID NO: 340, SEQ ID NO: 521, SEQ ID NO: 832, SEQ ID NO: 869, SEQ ID NO: 1001, SEQ ID NO: 1285, SEQ ID NO: 1674, SEQ ID NO: 1714 and SEQ ID NO: 2111.

14. An isolated nucleic acid comprising at least 300 consecutive nucleotides, which is hybridizable under high stringency conditions to a nucleic acid sequence selected from the group consisting of SEQ ID NO: 340, SEQ ID NO: 521, SEQ ID NO: 832, SEQ ID NO: 869, SEQ ID NO: 1001, SEQ ID NO: 1285, SEQ ID NO: 1674, SEQ ID NO: 1714, and SEQ ID NO: 2111.