Patent Grant
11971413
This application claims priority to Chinese Patent Application No. 201910005411.2, filed on Jan. 3, 2019, which is incorporated herein by reference in its entirety as part of this application.
The present disclosure relates to the technical field of biomedicine. In particular, embodiments disclosed herein relate to a peptoid, and its preparation method and use.
Epithelial cell adhesion molecule (EpCAM) belongs to the family of adhesion molecules. It is a single transmembrane protein encoded by a tumor-associated calcium signal transducer 1 (TACSTD1) gene, and is involved in regulating cell-to-cell adhesion, and mediates signal transduction, cell migration, proliferation, and differentiation. Under pathological conditions, EpCAM is expressed in almost all adenocarcinomas, including colorectal adenocarcinoma, gastric adenocarcinoma, breast cancer, ovarian cancer, lung adenocarcinoma, prostate cancer, pancreatic cancer, as well as stem cell cancer and retinoblastoma. EpCAM activates the expression of protooncogenes such as c-myc gene and cyclin A/E by participating in a β-catenin-dependent Wnt cascade, thereby having tumorigenic effects. At the same time, EpCAM is also an important indicator of tumor prognosis. Under normal circumstances, EpCAM is negatively expressed in esophageal squamous epithelium. However, in primary esophageal squamous cell carcinoma, almost 80% of tumors express EpCAM at various degrees. The average interval of postoperative recurrence of EpCAM-strongly positive esophageal squamous cell carcinoma is 9 months, while the average interval of postoperative recurrence of EpCAM-negative, weakly positive, and positive esophageal squamous cell carcinoma is 43 months, indicating that the overexpression of EpCAM affects the prognosis of esophageal squamous cell carcinoma. In addition, the overexpression of EpCAM in breast cancer and gastric cancer, etc. is also an important indicator of cancer cell metastasis.
Targeted cancer treatment and in vivo imaging have become one of the most popular topics in the academic and clinical medical fields. Traditionally, the anti-tumor drugs currently used in clinical practice are mainly cytotoxic chemotherapy drugs, but these drugs have poor selectivity, large toxic and side effects, and easily cause adverse reactions. Although protein drugs such as antibodies have high specificity and small toxic and side effects, they can easily cause immune response and produce drug resistance due to their large molecular mass and complex structure. Moreover, preparation process of protein drugs is so complicated that they are too expensive for ordinary tumor patients to bear.
With the enhanced permeability and retention effect (EPR) of solid tumors, new drug carriers can deliver drugs to tumor sites in a passively targeted manner Specific targeted drug delivery requires specific recognition elements to enable drugs to be actively enriched at the tumor site, thereby increasing the drug concentration, increasing penetration, and significantly improving efficacy. Moreover, in vivo imaging can be achieved by using recognition elements as a main body and combining imaging methods such as fluorescence and nuclear magnetic resonance. Therefore, the recognition element is very important for the entire targeted drug and in vivo imaging, in which the recognition element includes antibodies, polypeptides/peptoids, and aptamers, and other molecular probes that target specific receptor proteins at tumor sites. Among various targeting molecules, small molecule aptamers have a series of unique advantages, such as low immunogenicity, good tissue permeability, small molecular weight, high stability, easy modification and low cost.
Therefore, it is desirable to develop a peptoid molecular probe for diseases associated with an EpCAM protein, to achieve targeted therapy, in vivo imaging diagnosis and prognosis monitoring of the diseases associated with the EpCAM protein at low cost, high accuracy and high efficiency.
At least one embodiment disclosed herein provides a peptoid, which is a compound of Formula I, or a stereoisomer, a mixture of stereoisomers, or a pharmaceutically acceptable salt thereof,
respectively.
For example, among the peptoids, the pharmaceutically acceptable salt is hydrochloride, hydrobromide, sulfate, nitrate, phosphate, formate, acetate, propionate, fumarate, glycolate, pyruvate, malate, malonate, benzoate, cinnamate, mandelate, salicylate, maleate, citrate, succinate, tartrate, mesylate, ethanesulfonate, or p-toluenesulfonate.
In one embodiment, the peptoid is the compound of Formula I.
At least one embodiment disclosed herein also provides a method for preparing a peptoid, the method including:
For example, the cysteine used is L-cysteine, D-cysteine, or a mixture of the two.
At least one embodiment disclosed herein provides the use of any of the above-mentioned peptoids in the manufacture of a medicament for the targeted treatment of a disease associated with an EpCAM protein.
In one embodiment, the disease associated with an EpCAM protein is adenocarcinoma. For example, the disease associated with an EpCAM protein is colorectal adenocarcinoma, gastric adenocarcinoma, breast cancer, ovarian cancer, lung adenocarcinoma, prostate cancer, pancreatic cancer, stem cell cancer, retinoblastoma or primary esophageal squamous cell carcinoma.
At least one embodiment disclosed herein also provides a pharmaceutical composition comprising any of the above-mentioned peptoids; and a pharmaceutically acceptable adjuvant.
For example, the adjuvant is any one or more of excipients, diluents, carriers, flavoring agents, binders, and fillers.
At least one embodiment disclosed herein also provides the use of any of the above-mentioned pharmaceutical compositions for imaging detection or prognostic monitoring of diseases associated with an EpCAM protein.
In one embodiment, the disease associated with an EpCAM protein is adenocarcinoma. For example, the disease associated with an EpCAM protein is colorectal adenocarcinoma, gastric adenocarcinoma, breast cancer, ovarian cancer, lung adenocarcinoma, prostate cancer, pancreatic cancer, stem cell cancer, retinoblastoma or primary esophageal squamous cell carcinoma.
At least one embodiment disclosed herein also provides a chip comprising any of the above-mentioned peptoids. For example, the peptoid is coupled to the surface of the chip. In one embodiment, the chip is a microfluidic chip.
At least one embodiment disclosed herein also provides a kit for identifying circulating tumor cells, including a box body, a microfluidic chip disposed in the box body, and a fluorescent probe disposed in the box body, wherein the fluorescent probe is the above-mentioned peptoid with a fluorescent label.
In order to more clearly illustrate the technical solutions of embodiments disclosed herein, the drawings of embodiments will be briefly introduced below. Obviously, the drawings described below only relate to some embodiments disclosed herein, but do not limit the present disclosure.
The various documents and publications mentioned in this disclosure are incorporated herein by reference. Unless otherwise defined, the technical or scientific terms used in this disclosure shall have the ordinary meaning as understood by those of ordinary skill in the art to which this invention belongs.
The term “pharmaceutically acceptable” in this disclosure indicates that a substance or composition is chemically and/or toxicologically compatible with other ingredients that make up the formulation and/or the mammal being treated therewith. The term “pharmaceutically acceptable salt” in this disclosure refers to a pharmaceutically acceptable salt formed by a compound.
The word “including”, “containing”, “comprising”, or the like used in this disclosure indicates that the element appearing before the word encompasses the element listed after the word and its equivalent, without excluding other elements. A monomer in the present disclosure refers to an amine added as a raw material in the solid-phase synthesis of a peptoid. A subunit in the present disclosure refers to a structural unit constituting a peptoid.
A peptoid is a polypeptide mimetic with an N-substituted glycine as a structural unit. Compared with a polypeptide, side chains of a peptoid are transferred from α-carbon to nitrogen. Different from traditional polypeptides which are composed of only 20 kinds of amino acids, the peptoid is synthesized by a monomer synthesis process and its constituent units are determined by different amines There are thousands of amines, and thus the peptoids have extremely abundant sequences. It is possible to develop different chemical sequence structures for different targets. Moreover, because the peptoids are not recognized by enzymes, the peptoids can effectively resist proteolysis in vivo, which makes the peptoids have more obvious advantages as a molecular probe.
The drug delivery system and the molecular imaging system developed based on the peptoid molecular probe may enhance the stability of drugs, increase an interaction between drugs and tumor cells/tissues, and increase the circulating metabolic cycle in vivo. Therefore, it has advantages in terms of in vivo imaging diagnosis, drug efficacy enhancement, overcoming of drug resistance, and reduction of toxicity side effects.
The present disclosure provides a peptoid, which is a compound of Formula I, or a stereoisomer, a mixture of stereoisomers, or a pharmaceutically acceptable salt thereof,
respectively.
The term “stereoisomer” belongs to a kind of isomers, and refers to an isomer that has the same interconnecting orders of atoms or atomic groups, but different spatial arrangements.
With regard to the stereoisomer, the compound of Formula (I) has one asymmetric carbon atom, and can exist as an individual enantiomer, or as a mixture of enantiomers, such as racemic or enantiomerically enriched mixtures. The present disclosure encompasses any stereoisomer of the compound of Formula (I) or a pharmaceutically acceptable salt thereof, and a mixture thereof in various forms.
The peptoid disclosed herein can be prepared as an individual enantiomer or a racemic mixture by selecting raw materials. For example, in the preparation of a peptoid disclosed herein, the cysteine as a raw material can be selected from D-cysteine, L-cysteine, or a mixture of the two.
The peptoid disclosed herein can also be separated into individual enantiomers by chiral resolution, such as chiral HPLC resolution.
In one embodiment disclosed herein, the peptoid is the compound of Formula I.
The peptoid disclosed herein may exist in the form of a salt. For example, the salt may be prepared by reacting a peptoid compound with an inorganic or organic acid. The inorganic acid is, for example, hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, or the like. The organic acid is, for example, formic acid, acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, malic acid, malonic acid, succinic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, mesylic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid, or the like.
In one embodiment disclosed herein, the salt is a pharmaceutically acceptable salt. For example, the pharmaceutically acceptable salt may be hydrochloride, hydrobromide, sulfate, nitrate, phosphate, formate, acetate, propionate, fumarate, glycolate, pyruvate, malate, malonate, benzoate, cinnamate, mandelate, salicylate, maleate, citrate, succinate, tartrate, mesylate, ethanesulfonate, or p-toluenesulfonate.
In one embodiment disclosed herein, the pharmaceutically acceptable salt is, for example, hydrochloride, nitrate, sulfate, phosphate, formate, acetate, fumarate, maleate, citrate, succinate, tartrate, mesylate, or p-toluenesulfonate.
The present disclosure also provides a method for preparing the above-mentioned peptoid. The peptoid disclosed herein can be synthesized by a solid-phase synthesis method according to the subunit order of Formula I. The solid-phase synthesis method is well known to those skilled in the art. For example, J. Am. Chem. Soc. 1992, 114, 10646-10647 reports a method for solid phase synthesis of peptoid. The peptoid disclosed herein can be synthesized by the solid phase synthesis method shown below.
In the above reaction 1, bromoacetic acid may be replaced with bromoacetyl chloride.
At least one embodiment disclosed herein also provides a method for preparing a peptoid. The method includes:
In a method for preparing a peptoid according to an embodiment disclosed herein, the cysteine monomer may be selected from D-cysteine, L-cysteine, or a mixture of the two. For example, the cysteine monomer can be selected from L-cysteine.
In the method for preparing a peptoid disclosed herein, firstly, the compound of Formula II is subjected to an amidation reaction with an amino group at the terminal end of a solid phase support resin to form an amide bond, and then a subsequent nucleophilic substitution reaction with a monomer is carried out, and the compound of Formula II is again used to carry out an amidation reaction with an amino group of the previous monomer to form an amide bond, and the subsequent nucleophilic substitution reaction with another monomer is carried out until the synthesis of all subunits is completed.
As an amino-protecting group, amino-protecting groups known in the art for the synthesis of proteins, polypeptides, or peptoids can be used without limitation, for example, amino protecting groups listed in Greene's Protective Groups in Organic Synthesis, 5th edition by Peter G. M. Wuts. In some embodiments, the amino protecting group is 9-fluorenylmethoxycarbonyl (Fmoc) or tert-butoxycarbonyl (Boc). For example, in some embodiments, the amino protecting group is tert-butoxycarbonyl.
The reaction conditions of the amidation reaction in the above step (1) are not particularly limited, and conventional conditions for an amidation reaction for the synthesis of proteins, polypeptides, or peptoids in the art may be adopted, as long as the amino group can be acylated without disrupting the function of the peptoid. For example, the amidation reaction described above can be carried out in the presence of a condensation agent. The condensation agent may be, without limitation, a condensation agent known in the art for the synthesis of proteins, polypeptides, or peptoids. For example, the condensation agent may be a carbodiimide-based condensation agent, for example, N,N′-diisopropylcarbodiimide (DIC), N,N′-dicyclohexylcarbodiimide (DCC), 1-ethyl-(3-dimethylaminopropyl)carbodiimide (EDC) and so on; a benzotriazole-based condensation agent, for example, 1-hydroxybenzotriazole (HOBt); a benzenesulfonylchloride-based condensation agent, for example, tri-isopropylbenzenesulfonyl chloride (TPS) and so on; a succinimide-based condensation agent, for example, disuccinimido carbonate (DSC), succinimido diphenyl phosphate (SDPP) and so on; 2-ethoxy-1-ethoxycarbonyl-1,2-dihydroquinoline (EEDQ); 3-(diethoxyphosphoryloxy)-1,2,3-benzotriazin-4(3H)-one (DEPBT) and so on.
The reaction conditions of the nucleophilic substitution reaction in the above-mentioned step (2) are not particularly limited, and conventional nucleophilic substitution conditions for using in the synthesis of proteins, polypeptides, or peptoids can be used, as long as the bromine atom can be replaced and the function of the peptoid is not damaged. For example, the reaction is carried out at a temperature of 35° C. to 40° C. for 30 minutes or more, 60 minutes or more, or 90 minutes or more.
In the above-mentioned step (4), the removal of the side chain amino protection group and the cleavage of the peptoid from the resin can be carried out simultaneously or successively. For example, firstly, the peptoid is cleaved from the resin, and then the side chain amino protection group is removed; alternatively, the side chain amino protection group is removed firstly, and then the peptoid is cleaved from the resin; or the peptoid is cleaved from the resin while the side chain amino protection group is removed. The conventional conditions for synthesis of proteins, polypeptides or peptoids in the art can be used to remove the side chain amino protection group and cleave the peptoid from the resin, as long as the purpose can be achieved and the function of the peptoid is not damaged. In an embodiment, the peptoid is cleaved from the resin while the side chain amino protection group is removed by a cleaving solution containing 95% trifluoroacetic acid, 2.5% ultrapure water and 2.5% triisopropylsilane at a volume ratio.
In a method for preparing a peptoid disclosed herein, a step of purifying the obtained product may be further included as necessary. The purification method is not particularly limited, and methods known in the art for purifying corresponding similar products, such as precipitation, filtration, dialysis, gel permeation chromatography, HPLC, and the like, can be used.
The present disclosure also provides a medicament for the targeted treatment of diseases associated with an EpCAM protein. The peptoid disclosed herein can specifically recognize the EpCAM protein, and therefore, it can be used as a molecular probe that specifically recognizes the EpCAM protein for preparing a medicament for the targeted treatment of a disease associated with the EpCAM protein. In one embodiment, the disease associated with EpCAM protein is adenocarcinoma. For example, the disease associated with EpCAM protein is colorectal adenocarcinoma, gastric adenocarcinoma, breast cancer, ovarian cancer, lung adenocarcinoma, prostate cancer, pancreatic cancer, stem cell cancer, retinoblastoma or primary esophageal squamous cell carcinoma.
The present disclosure also provides a pharmaceutical composition comprising any of the above-mentioned peptoids and a pharmaceutically acceptable adjuvant. For example, the pharmaceutically acceptable adjuvant is any one or more of excipients, diluents, carriers, flavoring agents, binders and fillers.
The peptoids disclosed herein have a high affinity for an EpCAM protein, and thus can realize targeted drug delivery and localized imaging by identifying the EpCAM protein, thereby providing a new option for the diagnosis and treatment of diseases with high expression of EpCAM, and also providing live data evidence for sequencing and digital PCR results.
The present disclosure also provides the use of the above-mentioned pharmaceutical composition for imaging detection or prognosis monitoring of diseases associated with an EpCAM protein. In one embodiment, the disease associated with the EpCAM protein is adenocarcinoma. For example, the disease associated with EpCAM protein is colorectal adenocarcinoma, gastric adenocarcinoma, breast cancer, ovarian cancer, lung adenocarcinoma, prostate cancer, pancreatic cancer, stem cell cancer, retinoblastoma or primary esophageal squamous cell carcinoma.
The present disclosure also provides a chip (e.g., a microfluidic chip) containing the above-mentioned peptoid. In one embodiment, the peptoid is coupled to the chip surface for the capture and diagnosis of circulating tumor cells.
Circulating tumor cell (CTC) is a collective name for various types of tumor cells that exist in peripheral blood. It is detached from solid tumor lesions (primary lesions, metastases) spontaneously or due to diagnosis or treatment operation. Most CTCs undergo apoptosis or are swallowed after entering the peripheral blood. A few can escape and develop into metastases, increasing the risk of death in patients with malignant tumors. The presence or absence of CTC and the amount of CTC are important indicators of cancer progression and metastasis. Detection and tracking of the amount of CTCs in peripheral blood is helpful for early screening, efficacy monitoring, prognostic judgment and recurrence prediction of patients.
The detection technology for CTCs can predict the occurrence of early tumors, and can detect the tumor metastasis during treating patients with drugs. In addition, it can also guide medication for subsequent treatment. CTCs are derived from primary tumors or metastatic tumors. CTCs can enter blood vessels after being detached from basement membrane. Because the content of CTCs in the blood is extremely low and its size is similar to the size of white blood cells, CTCs are difficult to be detected using liquid biopsy technology. However, CTCs carry relevant cancer-specific, highly expressed proteins on their surfaces.
The chip disclosed herein can be prepared in accordance with conventional methods by using various blank chips known in the prior art for capturing and detecting CTCs; or can be prepared by using commercially available blank chips that can be used for capturing and detecting CTCs. For example, the chip can be prepared from a PlexArray HT 3D chip available from Plexera Bioscience, USA.
Coupling of peptoid on a chip surface can be achieved by formulating the peptoid into a sample of a peptoid molecule probe, spotting it on the chip surface, and then incubating.
By being combined with surface plasmon resonance imaging technology, the chip disclosed herein can realize the capture and diagnosis of CTCs of diseases associated with an EpCAM protein, such as colorectal adenocarcinoma, gastric adenocarcinoma, breast cancer, ovarian cancer, lung adenocarcinoma, prostate cancer, pancreatic cancer, stem cell cancer, retinoblastoma or primary esophageal squamous cell carcinoma.
The present disclosure also provides a kit for identifying circulating tumor cells, comprising a box body, a microfluidic chip disposed in the box body, and a fluorescent probe disposed in the box body, wherein the fluorescent probe is the above-mentioned peptoid with a fluorescent label.
For example, the microfluidic chip includes a microvalve control layer and a microvalve film layer. The microvalve control layer is provided with three gas channels, as well as six holes through the control layer. The three holes are sample loading holes, which are communicated with a substrate and used for inflow and outflow of samples and reagents; and the other three holes are connected to the three gas channels, respectively, for gas injection and to control the opening and closing of microvalve. The microvalve film layer is provided with three holes through the film layer, which are communicated with the three sample loading holes of the above-mentioned microvalve control layer, respectively.
For example, the outline dimensions of the microvalve control layer and the microvalve film layer should match the substrate.
The type of the fluorophore used for fluorescent labeling is not particularly limited, as long as the modification can impart fluorescent properties to the peptoid and the modified peptoid can also realize the basic function of the peptoid. The peptoid can be modified with one or more fluorophores. For example, a single fluorescently labeled peptoid is obtained by modification with one fluorophore, or a double fluorescently labeled peptoid is obtained by modification with two fluorophores. In some embodiments, the fluorophore may be selected from, without limitation, blue fluorescent dyes, near-infrared fluorescent dyes, green fluorescent dyes, and the like, e.g. coumarin-containing fluorophores, anthracene-containing fluorophores, rhodamine fluorophores, phenanthrenoimidazole fluorophores, naphthalene-containing fluorophores, fluorescein isothiocyanate, carboxyfluorescein (FAM), fluorescein thiocyanate (FITC), dansyl chloride, 2,4-dinitrophenylhydrazine (Dnp), carboxyrhodamine 110, Texas Red, pentamethine cyanine dyes (Cy5), heptamethine cyanine dyes (Cy7), etc.
For example, in addition to microfluidic chips and fluorescent probes, the detection system can also include a fluorescence microscope (fluorescence imaging system), an image analysis software (analysis counting system), and a pump to form a complete system so as to process blood samples and isolate and count circulating tumor cells.
For example, a fluorescence microscope is used to detect whether cells in a micro-location array have fluorescence, and a full-coverage fluorescence imaging is performed on the functional area to obtain a multi-channel fluorescence image.
For example, an image processing software is used to analyze the images acquired by a fluorescence microscope and obtain the corresponding amount of CTCs. The software screens out CTCs that meet requirements by accurately calculating the size, area, aspect ratio, and roundness of cells in the image, and counts the CTCs. The localized cells can be screened and identified according to an algorithm. Circulating tumor cells that meet the labelled fluorescent characteristics are identified and counted, the cell location is reported, and the cell image is magnified.
Unless otherwise specified, the experimental methods used in the following examples are conventional methods. Unless otherwise specified, the materials and reagents used in the following examples can be obtained from commercial sources.
The SPRi instrument in the following examples is Plexera Kx5V2, Plexera Bioscience LLC, USA. The instrument is mainly equipped with a 660 nm LED light source, a CCD image collector and a sensor chip with a microfluidic channel. The instrument displays the change of the reflected light intensity over time at each monitoring point and records it as an SPR curve.
Unless otherwise specified, “EpCAM” herein refers to the full-length epithelial cell adhesion molecule.
Unless otherwise specified, “nM” herein refers to “n mol/L”, “μM” refers to “μmol/L”, and “mM” refers to “m mol/L”.
The peptoids were synthesized by solid-phase synthesis, comprising the following steps:
The specific steps for cell-level imaging using a fluorescently labeled molecular probe with a peptoid were as follows:
The test results were shown in
Left 1 indicates that after adding an FITC-labeled peptoid probe to Huh7 cells, there was obvious FITC green fluorescence (red arrow) on the cell membrane, because the peptoid probe targets the EpCAM protein on the Huh7 cell membrane.
Left 2 indicates that after adding an FITC-labeled peptoid probe to 293T cells, no obvious FITC fluorescence signal was observed on the cell membrane because the EpCAM protein was not highly expressed on the membrane of 293T cells, but FITC fluorescence was present in the solution (red arrow, not strong due to the dilution effect of the solution)
Right 1 indicates that the cells of left 1 are stained with DAPI. Right 2 indicates that the cells of left 2 are stained with DAPI.
Significant green fluorescence was observed for Huh7 cells to which the peptoid of Example 1 was added, while 293T cells in the control group showed weak green fluorescence or no green fluorescence. Therefore,
The specific steps to test the binding ability between peptoid probe and EpCAM protein using surface plasmon resonance imaging technology were as follows:
The detection results are shown in
After fitting by BIA evaluation version 4.1 software (Biacore, Inc.), the equilibrium dissociation constant KD is 6.77×10−8 mol/L, which indicates that the peptoid of Example 1 has a fairly high affinity with EpCAM.
In summary, the molecular probe with peptoids disclosed herein is a molecule targeting probe with high sensitivity and affinity for EpCAM protein, and provides a new option for targeted therapy or imaging detection of EpCAM overexpressing cancers.
The present disclosure illustrates the process method disclosed herein through the above examples, but the present invention is not limited to the above process steps. That is, it does not mean that the present invention must rely on the above process steps to be implemented. In the case of no conflict, the examples disclosed herein and the features in the examples can be combined with each other to obtain new examples.
Those skilled in the art should understand that any improvement to the present invention, equivalent replacement of the raw materials used in the present invention, addition of auxiliary components, selection of specific manners, etc., all fall within the scope of protection and disclosure of the present invention. The protection scope of the present invention shall be defined by the claims.
| Number | Date | Country | Kind |
|---|---|---|---|
| 201910005411.2 | Jan 2019 | CN | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/CN2019/110443 | 10/10/2019 | WO |
| Publishing Document | Publishing Date | Country | Kind |
|---|---|---|---|
| WO2020/140530 | 7/9/2020 | WO | A |
| Number | Date | Country | |
|---|---|---|---|
| 20220365090 A1 | Nov 2022 | US |
