Patent Application
20220175817
The present invention relates to a double-stranded nucleic acid complex capable of specifically suppressing the expression of a target gene expressed in the skeletal muscle and heart muscle, and a pharmaceutical composition for treating or preventing muscle disease comprising the same as an active ingredient.
Muscular dystrophy, which is a type of muscle disease, is a progressive hereditary muscle disease that causes muscle atrophy and muscular weakness due to degeneration or necrosis of muscle fibers in skeletal muscles. Increase in severity will lead to motor function impairment such as difficulty in walking, or in many cases even to death due to respiratory failure and cardiac failure. Various disease types of muscular dystrophy are known, such as Duchenne type, Becker type, limb-girdle type, and facioscapulohumeral type, depending on the mode of inheritance and clinical manifestations (Non-Patent Literature 1).
There has been so far no radical treatment for muscular dystrophy, and most cases are treated symptomatically. For example, in the case of Duchenne muscular dystrophy, steroids have been used conventionally to treat skeletal muscle disorders. In February 2017, the U.S. Food and Drug Administration (FDA) approved deflazacort (product name: Emflaza®) as a therapeutic drug for Duchenne muscular dystrophy (DMD) in children of age 5 and older and adults. This therapeutic drug is a corticosteroid agent that reduces the immune system activity and suppresses inflammation. Also in September 2016, the U.S. FDA further approved eteplirsen (product name: EXONDYS 51) as a therapeutic drug for Duchenne muscular dystrophy. This therapeutic drug is a nucleic acid medicine designed to induce exon skipping in pre-mRNA splicing at the time of expression of a dystrophin gene such that mRNA lacking the 51st exon is synthesized.
The prevalence rate of muscular dystrophy is said to be 17 to 20 per a population of 100,000 people. The market size of related therapeutic drugs is growing every year, and is estimated to reach 78.5 billion dollars by 2022.
In recent years, oligonucleotides have attracted much interest in the development of a pharmaceutical, called nucleic acid medicine. In particular, because of high selectivity for a target gene and low toxicity, the development of nucleic acid medicine utilizing an antisense method is being actively promoted. The antisense method is a method in which expression of the protein encoded by a target gene is selectively modified or inhibited by introducing an oligonucleotide complementary to a partial sequence of mRNA or miRNA transcribed from the target gene as the target sense strand (antisense oligonucleotide: herein often referred to as “ASO”) into a cell.
As a nucleic acid utilizing the antisense method, the present inventors have so far developed a double-stranded nucleic acid complex in which an antisense oligonucleotide and a complementary strand thereto are annealed. For example, Patent Literature 1 discloses that an antisense oligonucleotide annealed with a tocopherol-bound complementary strand is efficiently delivered to the liver, and exhibits a high antisense effect. Further, in Patent Literature 2 a double-stranded antisense oligonucleotide having an exon skipping effect as a short gapmer antisense oligonucleotide in which additional nucleotide(s) is (are) added to 5′ end, 3′ end, or both 5′ end and 3′ end of a gapmer (antisense oligonucleotide) is developed. In addition, in Patent Literature 3 a double-stranded agent for delivering a therapeutic oligonucleotide is also developed.
As mentioned above, most deaths from muscular dystrophy are caused by respiratory failure or cardiac failure due to expression of a mutated gene. If the expression of such a gene expressed in skeletal muscles such as the diaphragm, or in the heart muscle can be controlled by the aforedescribed nucleic acid medicine, it might be possible to decrease mortality from muscular dystrophy. Further, the same approach may be used to treat or prevent other muscle diseases such as myopathy and cardiac myopathy.
However, a nucleic acid complex that is efficiently delivered to the skeletal muscle or heart muscle, and exhibits an excellent antisense effect at the site, has not been developed to date.
An object of the present invention is to develop a nucleic acid complex that is efficiently delivered to a skeletal muscle and/or a heart muscle and exhibits an excellent antisense effect at the site. Another object is to develop a composition for treating or preventing a muscle disease that occurs in a skeletal muscle, a heart muscle, and the like comprising such a nucleic acid complex as an active ingredient.
In order to achieve the aforedescribed objects, the inventors have diligently conducted investigations and found that a double-stranded nucleic acid complex consisting of an antisense oligonucleotide and a complementary strand to which a lipid, especially cholesterol, is bound, which was previously thought to be mainly delivered to the liver, can also be efficiently delivered to the skeletal muscle and heart muscle to exhibit a supreme antisense effect at the sites.
Therefore, by designing the target gene of a double-stranded nucleic acid complex (double-stranded nucleic acid agent) having the above configuration for the causative gene of a muscle disease expressed in a skeletal muscle and/or a heart muscle, the antisense oligonucleotide can be efficiently delivered to the skeletal muscle and/or heart muscle to regulate the expression of the target gene, thereby also providing a composition for treating or preventing a muscle disease. The present invention is based on the above findings and development results, and provides the following.
(1) A double-stranded nucleic acid complex for suppressing or increasing the expression level of a transcription product or a translation product of a target gene, or inhibiting the function of a transcription product or a translation product of a target gene in the skeletal muscle or heart muscle of a subject, the complex comprising a first nucleic acid strand and a second nucleic acid strand, wherein said first nucleic acid strand comprises a base sequence that is capable of hybridizing to all or part of said transcription product of the target gene, and has an antisense effect on said transcription product, said second nucleic acid strand comprises a base sequence complementary to said first nucleic acid strand, and is bound to cholesterol or analog thereof, and said first nucleic acid strand is annealed to said second nucleic acid strand.
(2) The double-stranded nucleic acid complex according to (1), wherein said first nucleic acid strand comprises at least four consecutive deoxyribonucleosides.
(3) The double-stranded nucleic acid complex according to (2), wherein said first nucleic acid strand is a gapmer.
(4) The double-stranded nucleic acid complex according to (1) or (2), wherein said first nucleic acid strand is a mixmer.
(5) The double-stranded nucleic acid complex according to any one of (1) to (4), wherein said second nucleic acid strand comprises at least four consecutive ribonucleosides complementary to at least four consecutive deoxyribonucleosides in said first nucleic acid strand.
(6) The double-stranded nucleic acid complex according to any one of (1) to (5), wherein said second nucleic acid strand does not comprise a natural ribonucleoside.
(7) The double-stranded nucleic acid complex according to any one of (1) to (6), wherein the nucleic acid portion of said second nucleic acid strand consists of deoxyribonucleosides and/or sugar-modified nucleosides linked by modified or unmodified internucleoside linkages.
(8) The double-stranded nucleic acid complex according to any one of (1) to (7), wherein said second nucleic acid strand is bound to cholesterol or analog thereof.
(9) The double-stranded nucleic acid complex according to any one of (1) to (8), wherein said cholesterol or analog thereof is bound to 5′ end and/or 3′ end of said second nucleic acid strand.
(10) The double-stranded nucleic acid complex according to any one of (1) to (9), wherein said second nucleic acid strand is bound to a ligand via a cleavable or uncleavable linker.
(11) The double-stranded nucleic acid complex according to any one of (1) to (10), wherein said first nucleic acid strand is bound to said second nucleic acid strand via said linker.
(12) The double-stranded nucleic acid complex according to (10) or (11), wherein said linker consists of nucleic acids.
(13) A pharmaceutical composition comprising the double-stranded nucleic acid complex according to any one of (1) to (12) as an active ingredient.
(14) The pharmaceutical composition according to (13) for treating skeletal muscle dysfunction, or cardiac dysfunction of a subject.
(15) The pharmaceutical composition according to (13) or (14), wherein the skeletal muscle dysfunction or cardiac dysfunction is a disease selected from the group consisting of muscular dystrophy, myopathy, inflammatory myopathy, polymyositis, dermatomyositis, Danon disease, myasthenic syndrome, mitochondrial disease, myoglobinuria, glycogen storage disease, periodic paralysis, hereditary cardiomyopathy, hypertrophic cardiomyopathy, dilated cardiomyopathy, hereditary arrhythmia, neurodegenerative disorder, sarcopenia, and cachexia.
(16) The pharmaceutical composition according to any one of (13) to (15) wherein the pharmaceutical composition is administered by intravenous, intramuscular, or subcutaneous administration.
(17) The pharmaceutical composition according to any one of (13) to (16), wherein a single dose of said double-stranded nucleic acid complex is 0.1 mg/kg or more.
(18) The pharmaceutical composition according to any one of (13) to (17), wherein a single dose of said double-stranded nucleic acid complex is from 0.01 mg/kg to 200 mg/kg.
(19) The pharmaceutical composition according to any one of (13) to (18), wherein the transcription product of the target gene is an RNA selected from the group consisting of mRNA, microRNA, pre-mRNA, long non-coding RNA, and natural antisense RNA.
(20) The pharmaceutical composition according to any one of (13) to (19), wherein the first nucleic acid strand is an RNA selected from the group consisting of steric blocking, splicing switch, exon skipping, and exon inclusion.
(21) The pharmaceutical composition according to any one of (13) to (20), wherein the base sequence of the first nucleic acid strand in said double-stranded nucleic acid complex is represented by SEQ ID NO: 24.
(22) A double-stranded nucleic acid complex for inducing RNA editing, exon skipping, or exon inclusion of a target gene, or causing steric blocking of a target RNA in the skeletal muscle or heart muscle of a subject, the complex comprising a first nucleic acid strand and a second nucleic acid strand, wherein said first nucleic acid strand comprises a base sequence that is capable of hybridizing to all or part of the transcription product of said target gene, and has an antisense effect on said transcription product, said second nucleic acid strand comprises a base sequence that is complementary to said first nucleic acid strand, and said first nucleic acid strand is annealed to said second nucleic acid strand.
(23) The double-stranded nucleic acid complex according to (22), wherein said first nucleic acid strand comprises at least one morpholino nucleic acid or nucleic acid modified at the 2′-position of the ribose.
(24) The double-stranded nucleic acid complex according to (22) or (23), wherein 50% or more of bases in said first nucleic acid strand are morpholino nucleic acids or nucleic acids modified at the 2′-position of the ribose.
(25) The double-stranded nucleic acid complex according to any one of (22) to (24), wherein said first nucleic acid strand is a mixmer.
(26) The double-stranded nucleic acid complex according to any one of (22) to (25), wherein 100% of bases in said first nucleic acid strand are morpholino nucleic acids or nucleic acids modified at the 2′-position of the ribose.
(27) The double-stranded nucleic acid complex according to any one of (22) to (26), wherein said second nucleic acid strand does not comprise a natural ribonucleoside.
(28) The double-stranded nucleic acid complex according to any one of (22) to (27), wherein the nucleic acid portion of said second nucleic acid strand consists of deoxyribonucleosides and/or sugar-modified nucleosides linked by modified or unmodified internucleoside linkages.
(29) The double-stranded nucleic acid complex according to any one of (22) to (28), wherein said second nucleic acid strand is bound to a functional moiety.
(30) The double-stranded nucleic acid complex according to any one of (22) to (28), wherein said functional moiety is selected from the group consisting of cholesterol or analog thereof, tocopherol or analog thereof, phosphatidylethanolamine or analog thereof, a substituted or unsubstituted C1-C30 alkyl group, a substituted or unsubstituted C2-C30 alkenyl group, and a substituted or unsubstituted C1-C30 alkoxy group.
(31) The double-stranded nucleic acid complex according to (30), wherein said functional moiety is cholesterol or analog thereof.
(32) The double-stranded nucleic acid complex according to any one of (22) to (31), wherein said cholesterol or analog thereof is bound to 5′ end and/or 3′ end of said second nucleic acid strand.
(33) The double-stranded nucleic acid complex according to any one of (22) to (32), wherein said second nucleic acid strand is bound to a ligand via a cleavable or uncleavable linker.
(34) A pharmaceutical composition comprising the double-stranded nucleic acid complex according to any one of (22) to (33) as an active ingredient.
(35) The pharmaceutical composition according to (34) for treating muscular dystrophy of a subject.
(36) The pharmaceutical composition according to (35), wherein said muscular dystrophy is myotonic dystrophy or Duchenne muscular dystrophy.
(37) The pharmaceutical composition according to any one of (34) to (36) wherein the pharmaceutical composition is administered by intravenous or subcutaneous administration.
(38) The pharmaceutical composition according to any one of (34) to (37), wherein a single dose of said double-stranded nucleic acid complex is 0.1 mg/kg or more.
(39) The pharmaceutical composition according to any one of (34) to (38), wherein a single dose of said double-stranded nucleic acid complex is from 0.01 mg/kg to 200 mg/kg.
(40) The pharmaceutical composition according to any one of (34) to (39), wherein the base sequence of the first nucleic acid strand in said double-stranded nucleic acid complex is represented by any one of SEQ ID NOs: 25 to 28.
The entire contents of the disclosures in Japanese Patent Application No. 2019-073832 which forms the basis for priority of the present application are incorporated herein.
The present invention provides a double-stranded nucleic acid complex that enables delivery of a double-stranded nucleic acid complex agent to the skeletal muscle and heart muscle, and exhibits an antisense effect at the sites. The antisense effect allows for suppression or enhancement of expression, functional inhibition, or induction of exon skipping for a target gene.
The first aspect of the present invention relates to a double-stranded nucleic acid complex. The double-stranded nucleic acid complex of the present invention can suppress or increase the expression level of the transcription product or translation product of a target gene in the skeletal muscle or heart muscle of a subject, inhibit the function of the transcription product or translation product of a target gene, or induce steric blocking, splicing switching, RNA editing, exon skipping, or exon inclusion by an antisense effect.
The double-stranded nucleic acid complex of the present invention comprises a first nucleic acid strand and a second nucleic acid strand that are annealed to each other. This first nucleic acid strand comprises a base sequence capable of hybridizing to all or part of the transcription product of the target gene, and has an antisense effect on the transcription product. The second nucleic acid strand comprises a base sequence complementary to the first nucleic acid strand and has a functional moiety bound to the 5′ end and/or 3′ end.
A “target gene” means herein a gene, for which the expression level of the transcription product or translation product thereof can be suppressed or enhanced, the function of the transcription product or translation product can be inhibited, or steric blocking, splicing switching, RNA editing, exon skipping, or exon inclusion can be induced by the antisense effect of the double-stranded nucleic acid complex of the present invention. There is no particular restriction on the kind of a target gene, as long as it is expressed in vivo. Examples thereof include a gene which has been derived from an organism into which a double-stranded nucleic acid complex of the present invention is to be introduced, such as a gene whose expression is increased in various diseases. Specific examples thereof include a scavenger receptor B1 (herein often referred to as “SR-B1”) gene, a metastasis-associated lung adenocarcinoma associated lung adenocarcinoma transcript 1 (herein often referred to as “Malat1”) gene, a DMPK (dystrophia myotonica-protein kinase) gene, and a dystrophin gene.
Here, all of the scavenger receptors are receptor membrane proteins for denatured lipoproteins, and are known to be involved in cholesterol and lipoprotein metabolism. SR-B1 is a double-pass transmembrane protein belonging to the evolutionarily conserved CD36 family, and has a long extracellular domain and two short intracellular domains comprising the amino terminal and the carboxyl terminal respectively.
It is known that Malat1 is a long non-coding RNA (lncRNA) which is highly expressed in malignant tumors such as lung cancer, and is localized in the nucleus of myocytes.
The DMPK gene encodes a myotonin-protein kinase, and is known to be a causative gene for myotonic dystrophy, which is the most frequent type of muscular dystrophy in adults. It is believed that abnormal elongation of the CTG repeat sequence existing in the 3′ untranslated region of the DMPK gene is the cause of the disease.
A “target transcription product” means herein any RNA that is synthesized by an RNA polymerase and is a direct target of the nucleic acid complex of the present invention. In general, it is a “transcription product of a target gene”. Specifically, mRNA transcribed from a target gene (comprising mature mRNA, mRNA precursor, mRNA without base modification, and so on), non-coding RNA (ncRNA) such as miRNA, long non-coding RNA (lncRNA), and natural antisense RNA can be included. Examples of a transcription product of a target gene may comprise SR-B1 mRNA which is a transcription product of the SR-B1 gene, Malat1 non-coding RNA which is a transcription product of the Malat1 gene, and DMPK mRNA which is a transcription product of the DMPK gene.
As specific examples, the base sequence of a murine SR-B1 mRNA is shown in SEQ ID NO: 1, and the base sequence of a human SR-B1 mRNA is shown in SEQ ID NO: 2. Further, the base sequence of a murine malat1 non-coding RNA is shown in SEQ ID NO: 3, and a human malat1 non-coding RNA is shown in SEQ ID NO: 4. Furthermore, the base sequence of a murine DMPK mRNA is shown in SEQ ID NO: 5, and the base sequence of a human DMPK mRNA is shown in SEQ ID NO: 6. In this regard, in all of SEQ ID NOs: 1 to 6, the base sequences of mRNA are replaced with the base sequences of DNA. The base sequence information for these genes and transcription products can be obtained from publicly known databases, such as the database of NCBI (The U.S. National Center for Biotechnology Information).
The base sequence of a publicly known antisense medicine may be also utilized. For example, the base sequence shown in SEQ ID NO: 24 constituting ISIS 598769 (IONIS) which is a therapeutic drug for myotonic dystrophy and related to its causative gene, namely DMPK gene, the base sequence shown in SEQ ID NO: 25 constituting Eteplirsen (Exondys 51, Sarepta Therapeutics), which is known as a therapeutic drug for Duchenne muscular dystrophy and induces exon skipping in pre-mRNA of the dystrophin gene, the base sequence shown in SEQ ID NO: 26 constituting Golodirsen (Sarepta Therapeutics), the base sequence shown in SEQ ID NO: 27 constituting NS-065/NCNP-01 (Nippon Shinyaku Co., Ltd.), or the base sequence shown in SEQ ID NO: 28 constituting Casimersen (Sarepta Therapeutics) may be used.
An “antisense oligonucleotide (ASO)” means herein a single-stranded oligonucleotide that comprises a complementary base sequence capable of hybridizing to all or part, such as any target region, of a target transcription product, and can regulate and suppress the expression of a transcription product of the target gene or the level of the target transcription product by an antisense effect. In the double-stranded nucleic acid complex of the present invention, the first nucleic acid strand functions as ASO, and its target region may comprise 3′UTR, 5′UTR, exon, intron, coding region, translation initiation region, translation termination region, or any other nucleic acid region. The target region of a target transcription product may be at least 8 base in length, for example, 10 to 35 base in length, 12 to 25 base in length, 13 to 20 base in length, 14 to 19 base in length, or 15 to 18 base in length.
An “antisense effect” means an effect of regulating expression or editing of a target transcription product by hybridization of ASO to the target transcription product (e.g. RNA sense strand). The phrase “regulating expression or editing of a target transcription product” means suppression or reduction of the expression of a target gene or the expression amount of a target transcription product (“expression amount of a target transcription product” is herein often referred to as “expression level of a target transcription product”), inhibition of translation, RNA editing, splicing function modification effect (e.g., splicing switching, exon inclusion, and exon skipping), or degradation of a transcription product. For example, in the case of post-transcriptional inhibition of a target gene, when an RNA oligonucleotide is introduced into a cell as ASO, the ASO forms a partial double strand by annealing to mRNA which is a transcription product of a target gene. This partial double strand serves as a cover to prevent translation by ribosomes, so as to inhibit the expression of the target protein encoded by the target gene at the translation level (steric blocking). On the other hand, when an oligonucleotide comprising DNA is introduced into a cell as ASO, a partial DNA-RNA heteroduplex is formed. This hetero double-strand structure is recognized by RNase H, and as a result mRNA of the target gene is degraded and the expression of the protein encoded by the target gene is inhibited at the expression level. In addition, an antisense effect can also be produced for an intron in an mRNA precursor as a target. Further, an antisense effect can also be produced for miRNA as a target. In this case, as a result of functional inhibition of the miRNA, the expression of the gene whose expression is normally regulated by the miRNA may be increased. In an embodiment, expression regulation of a target transcription product may be decrease of the amount of a target transcription product.
A “translation product of the target gene” means herein any polypeptide or protein that is a direct target of the nucleic acid complex of the present invention and is synthesized by translation of the target transcription product or a transcription product of the target gene. Examples of a translation product of the target gene comprise a SR-B1 protein, which is a translation product of the SR-B1 gene, a Malat1 protein, which is a translation product of the Malat1 gene, and a DMPK protein, which is a translation product of the DMPK gene.
The term “nucleic acid” or “nucleic acid molecule” used herein means a nucleoside or a nucleotide in the case of a monomer, an oligonucleotide in the case of an oligomer, and a polynucleotide in the case of a polymer.
A “nucleoside” generally means a molecule consisting of a combination of a base and a sugar. The sugar moiety of a nucleoside is usually, but not limited to, composed of pentofuranosyl sugar, and specific examples thereof include ribose and deoxyribose. The base moiety of nucleoside (nucleobase) is usually a heterocyclic base moiety. Without limitation, examples thereof include adenine, cytosine, guanine, thymine, and uracil as well as other modified nucleobases (modified bases).
A “nucleotide” refers to a molecule in which a phosphate group is covalently bonded to the sugar moiety of a nucleoside. In the case of a nucleotide comprising pentofuranosyl sugar, a phosphate group is usually linked to a hydroxyl group at the 2′, 3′, or 5′ position of the sugar.
An “oligonucleotide” refers to a linear oligomer formed by linking several to dozens of neighboring nucleotides through a covalent bond between a hydroxyl group and a phosphate group in the sugar moiety. Meanwhile, a “polynucleotide” refers to a linear polymer formed by linking with covalent bonds dozens or more, preferably hundreds or more of nucleotides, namely more nucleotides than in an oligonucleotide. It is considered that the phosphate group generally forms an internucleoside linkage inside the structure of an oligonucleotide or a polynucleotide.
A “nucleic acid strand” or simply “strand” herein means an oligonucleotide or a polynucleotide. A full length strand or a partial length strand of a nucleic acid strand can be produced by a chemical synthesis using an automated synthesizer, or by an enzymatic process using a polymerase, a ligase, or a restricted reaction. A nucleic acid strand may comprise a natural nucleotide and/or a non-natural nucleotide.
A “natural nucleoside” refers herein to a nucleoside that exists in nature. Examples thereof include a ribonucleoside consisting of a ribose and the aforementioned base such as adenine, cytosine, guanine, or uracil, or a deoxyribonucleoside consisting of a deoxyribose and the aforementioned base such as adenine, cytosine, guanine, or thymine. In this regard, a ribonucleoside found in RNA, and a deoxyribonucleoside found in DNA are herein often referred to as “DNA nucleoside” and “RNA nucleoside”, respectively.
A “natural nucleotide” means herein a nucleotide that exists in nature, namely a molecule in which a phosphate group is covalently bound to the sugar moiety of the aforementioned natural nucleoside. Examples thereof include a ribonucleotide which is known as a constituent of RNA, and in which a phosphate group is bound to a ribonucleoside, and a deoxyribonucleotide, which is known as a constituent of DNA, and in which a phosphate group is bound to a deoxyribonucleoside.
A “non-natural nucleoside” means herein any nucleoside other than a natural nucleoside. For example, it comprises a modified nucleoside and a nucleoside mimic. A “modified nucleoside” means herein a nucleoside having a modified sugar moiety and/or a modified nucleobase. A nucleic acid strand comprising a non-natural oligonucleotide is in many cases more preferable than a natural type owing to desirable properties, such as enhanced cellular uptake, enhanced affinity for a target nucleic acid, increased stability in the presence of a nuclease, and increase in inhibitory activity.
A “mimic” refers herein to a functional group that replaces a sugar, a nucleobase, and/or an internucleoside linkage. In general, a mimic is used in place of a sugar or a combination of a sugar-internucleoside linkage, and a nucleobase is maintained for hybridization to a target to be selected. The term “nucleoside mimic” used herein comprises a structure to be used for replacing a sugar at one or more sites of an oligomer compound, or replacing a sugar and a base, or replacing a bond between monomer subunits constituting an oligomer compound. An “oligomer compound” means a polymer composed of linked monomer subunits that can at least hybridize to a region of a nucleic acid molecule. Examples of a nucleoside mimic comprise a morpholino, cyclohexenyl, cyclohexyl, tetrahydropyranyl, bicyclic or tricyclic sugar mimic, such as a nucleoside mimic having a non-furanose sugar unit.
A “bicyclic nucleoside” herein means a modified nucleoside comprising a bicyclic sugar moiety. A nucleic acid comprising a bicyclic sugar moiety is commonly referred to as bridged nucleic acid (BNA). A nucleoside comprising a bicyclic sugar moiety is herein sometimes referred to as “bridged nucleoside.” Some examples of a bridged nucleic acid are shown in
A bicyclic sugar may be a sugar in which the carbon atom at the 2′ position and the carbon atom at the 4′ position are bridged with two or more atoms. Examples of a bicyclic sugar are known to those skilled in the art. A subgroup of nucleic acids comprising a bicyclic sugar (BNA) may be so described that they have a carbon atom at the 2′ position and a carbon atom at the 4′ position which are bridged with 4′-(CH2)p—O-2′, 4′-(CH2)p—CH2-2′, 4′-(CH2)p—S-2′, 4′-(CH2)p—O CH2O-2′, 4′-(CH2)n—N(R3)—O—(CH2)m-2′ [wherein p, m, and n represent integers from 1 to 4, from 0 to 2, and from 1 to 3, respectively; and R3 represents a hydrogen atom, an alkyl group, an alkenyl group, a cycloalkyl group, an aryl group, an aralkyl group, an acyl group, a sulfonyl group, and a unit substituent (e.g., a fluorescently or chemiluminescently labeled molecule, a functional group with nucleic acid cleavage activity, and an intracellular or intranuclear localization signal peptide)]. Furthermore, with respect to a BNA in a certain embodiment, in the OR2 substituent of the carbon atom at the 3′ position and the OR1 substituent of the carbon atom at the 5′ position, R1 and R2 are typically hydrogen atoms, but may be the same or different from each other, or may also be a protecting group for a hydroxyl group for nucleic acid synthesis, an alkyl group, an alkenyl group, a cycloalkyl group, an aryl group, an aralkyl group, an acyl group, a sulfonyl group, a silyl group, a phosphate group, a phosphate group protected by a protecting group for nucleic acid synthesis, or P(R4)R5 [wherein R4 and R5, may be the same or different from each other, and respectively represent a hydroxyl group, a hydroxyl group protected by a protecting group for nucleic acid synthesis, a mercapto group, a mercapto group protected by a protecting group for nucleic acid synthesis, an amino group, a C1-C5 alkoxy group, a C1-C5 alkylthio group, a C1-C6 cyanoalkoxy group, or an amino group substituted with a C1-C5 alkyl group]. Non-limiting examples of such BNA comprise methyleneoxy(4′-CH2—O-2′) BNA (LNA, Locked Nucleic Acid®, also known as 2′,4′-BNA), e.g., α-L-methyleneoxy(4′-CH2O-2′) BNA or β-D-methyleneoxy(4′-CH2—O-2′) BNA, ethyleneoxy(4′-(CH2)2—O-2′) BNA (also known as ENA), β-D-thio(4′-CH2—S-2′) BNA, aminooxy(4′-CH2—O—N(R3)-2′) BNA, oxyamino(4′-CH2—N(R3)—O-2′) BNA (also known as 2′,4′-BNANC), 2′,4′-BNA″c, 3′-amino-2′,4′-BNA, 5′-methyl BNA, (4′-CH(CH3)—O-2′) BNA (also known as cEt BNA), (4′-CH(CH2OCH3)—O-2′) BNA (also known as cMOE BNA), amido BNA (4′-C(O)—N(R)-2′) BNA (R═H, or Me) (also known as AmNA), 2′-O,4′-C-spirocyclopropylene-bridged nucleic acid (also known as scpBNA), and other BNA known to those skilled in the art. A bicyclic nucleoside having a methyleneoxy(4′-CH2—O-2′) bridge is herein often referred to as “LNA nucleoside”.
A “non-natural nucleotide” means herein any nucleotide other than a natural nucleotide. For example, it comprises a modified nucleotide and a nucleotide mimic. A “modified nucleotide” means herein a nucleotide having at least one of a modified sugar moiety, a modified internucleoside linkage, and a modified nucleobase. The term “nucleotide mimic” herein comprises a structure used to substitute a nucleoside and a bond (linkage) at one or more positions in an oligomer compound. Examples of the nucleotide mimic comprise a peptide nucleic acid, and a morpholino nucleic acid (morpholino linked with —N(H)—C(═O)—O— or another non-phosphodiester linkage). The peptide nucleic acid (PNA) is a nucleotide mimic having a main chain in which N-(2-aminoethyl)glycine in place of a sugar is linked with an amide linkage. A nucleic acid strand comprising a non-natural oligonucleotide herein has in many cases preferable properties, such as enhanced cellular uptake, enhanced affinity for a target nucleic acid, increased stability in the presence of a nuclease, and increase in inhibitory activity. Therefore, it is more preferable than a natural nucleotide.
A “modified internucleoside linkage” means herein an internucleoside linkage that has a substitution or any change from a naturally occurring internucleoside linkage (i.e., phosphodiester linkage). The modified internucleoside linkage comprises, but not limited to, a phosphorus-containing internucleoside linkage that comprises a phosphorus atom, and a phosphorus-free internucleoside linkage that does not comprise a phosphorus atom. Typical phosphorus-containing internucleoside linkages comprise, but not limited to, a phosphodiester linkage, a phosphorothioate linkage, a phosphorodithioate linkage, a phosphotriester linkage, an alkylphosphonate linkage, an alkylthiophosphonate linkage, a boranophosphate linkage, and a phosphoroamidate linkage. The phosphorothioate linkage is an internucleoside linkage in which an unbridged oxygen atom in a phosphodiester linkage is substituted with a sulfur atom. A method for preparing a phosphorus-containing and phosphorus-free linkage is well known. It is preferable that a modified internucleoside linkage is a linkage having a higher resistance to a nuclease than a naturally occurring internucleoside linkage.
A “modified nucleobase” or a “modified base” means herein any nucleobase other than adenine, cytosine, guanine, thymine, and uracil. Examples of a modified nucleobase comprise, but not limited to, 5-methylcytosine, 5-fluorocytosine, 5-bromocytosine, 5-iodocytosine, N4-methylcytosine, N6-methyladenine, 8-bromoadenine, N2-methylguanine, or 8-bromoguanine. A preferred modified nucleobase is 5-methylcytosine.
The term “unmodified nucleobase” or “unmodified base” is synonymous with a natural nucleobase, and means adenine (A) and guanine (G), which are purine bases, and thymine (T), cytosine (C), and uracil (U), which are pyrimidine bases.
A “modified sugar” refers herein to a sugar in which a natural sugar moiety (i.e., sugar moiety found in DNA(2′-H) or RNA(2′-OH)) has undergone a substitution and/or any change. A nucleic acid strand herein may comprise in some cases one or more modified nucleosides comprising a modified sugar. A sugar-modified nucleoside can confer a beneficial biological property such as enhanced nuclease stability, increased binding affinity, or the like to a nucleic acid strand. A nucleoside may comprise a chemically modified ribofuranose ring moiety. Examples of a chemically modified ribofuranose ring comprise, but not limited to, addition of a substituent (comprising 5′ and 2′ substituents), formation of a bicyclic nucleic acid (bridged nucleic acid, BNA) through bridge formation of a non-geminal ring atom, substitution of a ribosyl ring oxygen atom with S, N(R), or C(R1)(R2) (wherein R, R1, and R2 independently represent H, a C1-C12 alkyl, or a protecting group), and a combination thereof. Examples of a nucleoside having a modified sugar moiety herein comprise, but not limited to, a nucleoside comprising a substituent such as 5′-vinyl, 5′-methyl (R or S), 4′-S, 2′-F (2′-fluoro group), 2′-OCH3 (2′-OMe group or 2′-O-methyl), and 2′-O(CH2)2OCH3. A substituent at the 2′ position may be selected from allyl, amino, azide, thio, —O-allyl, —O—C1-C10 alkyl, —OCF3, —O(CH2)2SCH3, —O(CH2)2—O—N(Rm)(Rn), and O—CH2—C(═O)—N(Rm)(Rn), wherein Rm and Rn are independently H or a substituted or unsubstituted C1-C10 alkyl. A “2′-modified sugar” means herein a furanosyl sugar modified at the 2′ position.
In general, a modification can be performed such that nucleotides in the same strand can independently undergo different modifications. In addition, to provide resistance to enzymatic cleavage, the same nucleotide can have a modified internucleoside linkage (e.g., phosphorothioate linkage) and also a modified sugar (e.g., a 2′-O-methyl modified sugar or a bicyclic sugar). The same nucleotide can also have a modified nucleobase (e.g., 5-methylcytosine) and can also have a modified sugar (e.g., a 2′-O-methyl modified sugar, or a bicyclic sugar).
The number, kind, and position of a non-natural nucleotide in a nucleic acid strand may influence the antisense effect and the like provided by the nucleic acid complex of the present invention. The choice of a modification may vary depending on the sequence of a target gene or the like, but those skilled in the art can determine a suitable embodiment by referring to the descriptions in the literature related to the antisense method (e.g., WO 2007/143315, WO 2008/043753, and WO 2008/049085). Furthermore, when the antisense effect of a nucleic acid complex after the modification is measured and the obtained measured value is not significantly lower than the measured value of the nucleic acid complex before the modification (e.g., when the measured value obtained after the modification is 70% or more, 80% or more, or 90% or more of the measured value of the nucleic acid complex before the modification), a relevant modification may be evaluated.
The term “complementary” as used herein refers to the relationship that nucleobases can form via hydrogen bonds so-called Watson-Crick base pairs (natural base pairs) or non-Watson-Crick base pairs (Hoogsteen base pairs, etc.). The first nucleic acid strand is not necessarily required to be completely complementary to all or part of a target transcription product (e.g., the transcription product of a target gene), and it is acceptable if the base sequence has at least 70%, preferably at least 80%, and further preferably at least 90% (e.g., 95%, 96%, 97%, 98%, or 99% or more) in the complementarity. Similarly, the complementary region in the second nucleic acid strand is not necessarily required to be completely complementary to all or part of the first nucleic acid strand, and it is acceptable if the base sequence has a complementarity of at least 70%, preferably at least 80%, and further preferably at least 90% (e.g., 95%, 96%, 97%, 98%, or 99% or more).
In the present invention, a “muscle disease” refers to a disease that causes atrophy of muscles leading to muscular weakness. Example thereof include muscular dystrophy, myopathy, inflammatory myopathy (including polymyositis, and dermatomyositis), Danon disease, myasthenic syndrome, mitochondrial disease, myoglobinuria, glycogen storage disease, and periodic paralysis. In the present invention, a suitable muscle disease is muscular dystrophy. With respect to muscular dystrophy various disease types are known comprising Duchenne type, Becker type, Emery-Dreyfus type, limb-girdle type, facioscapulohumeral type, and oculopharyngeal type, and the muscular dystrophy herein may be any of these disease types. Similarly, with respect to myopathy various types are known comprising congenital, distal, hypothyroid, and steroidal myopathy types and the myopathy herein may be any of these disease types.
A “functional moiety” is herein a moiety that binds to a double-stranded nucleic acid complex to enable efficient delivery of the double-stranded nucleic acid complex to the skeletal muscle, heart muscle, etc. There is no particular restriction on the functional moiety, and it may be a lipid ligand, a lipid derivative ligand, a peptide ligand, an antibody ligand, an aptamer, a small molecule ligand, a ligand molecule to be incorporated into the heart muscle or skeletal muscle, or the like. For example, a functional moiety may be cholesterol or analog thereof, tocopherol or analog thereof, phosphatidyl ethanolamine or analog thereof, a substituted or unsubstituted C1-C30 alkyl group, a substituted or unsubstituted C2-C30 alkenyl group, or a substituted or unsubstituted C1-C30 alkoxy group.
“Tocopherol” is herein a methylated derivative of tocorol, and a liposoluble vitamin (vitamin E) having a cyclic structure called chroman. Tocopherol has a strong antioxidant effect, and therefore functions in vivo as an antioxidant substance to scavenge free radicals produced by metabolism and protect cells from damage.
A plurality of different types of tocopherol are known based on the position of the methyl group bound to chroman comprising α-tocopherol, β-tocopherol, γ-tocopherol, and 0.5-tocopherol. The tocopherol herein may be any types of tocopherol. In addition, examples of the analog of tocopherol comprise various unsaturated analogs of tocopherol, such as α-tocotrienol, β-tocotrienol, γ-tocotrienol, and δ-tocotrienol. Preferably, tocopherol is α-tocopherol.
“Cholesterol” is herein a kind of sterol, also called steroid alcohol, which is especially abundant in animals. Cholesterol exerts an important function in the metabolic process in vivo, and in animal cells, it is also a major constituent of the membrane system of a cell, together with phospholipid. In addition, the cholesterol analog refers to various cholesterol metabolism products and their analogs, which are alcohols with a sterol backbone. Examples thereof include, but not limited to, cholestanol, lanosterol, cerebrosterol, dehydrocholesterol, and coprostanol.
An “analog” herein refers to a compound having a similar structure and property having the same or a similar basic backbone. The analog comprises, for example, a biosynthetic intermediate, a metabolism product, and a compound having a substituent. Those skilled in the art can determine whether or not a compound is an analog of another compound based on common general technical knowledge.
A “subject” herein refers to the object to which the double-stranded nucleic acid complex or pharmaceutical composition of the present invention is applied. A subject comprises an individual as well as an organ, a tissue, and a cell. When the subject is an individual, any animal including a human may be applicable. For example, in addition to a human, a variety of domestic animals, domestic fowls, pets, and laboratory animals are included. Without limitation, a subject may be an individual who needs reduction of the expression level of a target transcription product in the skeletal muscle or heart muscle, or an individual who needs a treatment for or prevention from a muscle disease.
The double-stranded nucleic acid complex of the present invention comprises a first nucleic acid strand and a second nucleic acid strand. The specific configuration of each nucleic acid strand is described below.
The first nucleic acid strand is a single-stranded oligonucleotide strand that comprises a base sequence capable of hybridizing to all or part of the transcription product of a target gene and produces an antisense effect on the target transcription product.
The second nucleic acid strand is a single-stranded oligonucleotide strand that comprises a base sequence complementary to the first nucleic acid strand. The second nucleic acid strand is bound to cholesterol or analog thereof. Also, in a double-stranded nucleic acid complex, the second nucleic acid strand is annealed to the first nucleic acid strand via hydrogen bonds of complementary base pairs.
There is no particular restriction on the base lengths of the first nucleic acid strand and the second nucleic acid strand, and may be at least 8 base in length, at least 9 base in length, at least 10 base in length, at least 11 base in length, at least 12 base in length, at least 13 base in length, at least 14 base in length, or at least 15 base in length. Further, the base length of the first nucleic acid strand and the second nucleic acid strand may be 35 base in length or less, 30 base in length or less, 25 base in length or less, 24 base in length or less, 23 base in length or less, 22 base in length or less, 21 base in length or less, 20 base in length or less, 19 base in length or less, 18 base in length or less, 17 base in length or less, or 16 base in length or less. The first nucleic acid strand and the second nucleic acid strand may have the same length or different lengths (for example, one of them is shorter or longer by 1 to 3 bases). The double-stranded structure formed by the first nucleic acid strand and the second nucleic acid strand may comprise a bulge. The length can be determined according to the balance between the strength of the antisense effect and the specificity of the nucleic acid strand to the target, among other factors such as cost, and synthesis yield.
The internucleoside linkage in the first nucleic acid strand and second nucleic acid strand may be a naturally occurring internucleoside linkage and/or a modified internucleoside linkage. Without limitations, at least one, at least two, or at least three internucleoside linkages from an end (5′ end, 3′ end, or both ends) of the first nucleic acid strand and/or the second nucleic acid strand are preferably modified internucleoside linkages. In this regard, for example, two internucleoside linkages from an end of a nucleic acid strand means the internucleoside linkage closest to the end of the nucleic acid and the internucleoside linkage positioned next thereto and on the opposite side of the end. The modified internucleoside linkage in the terminal region of a nucleic acid strand is preferred because it can reduce or inhibit undesired degradation of the nucleic acid strand. In an embodiment, all the internucleoside linkages of the first nucleic acid strand and/or second nucleic acid strand may be modified internucleoside linkages. The modified internucleoside linkage may be a phosphorothioate linkage.
At least one (e.g., three) internucleoside linkage from the 3′ end of the second nucleic acid strand may be a modified internucleoside linkage such as a phosphorothioate linkage with a high resistance to an RNase. It is preferable that the second nucleic acid strand comprises a modified internucleoside linkage such as a phosphorothioate modification at the 3′ end, because the gene suppression activity of the double-stranded nucleic acid complex is enhanced.
At the 5′ end and 3′ end of the second nucleic acid strand, internucleoside linkages for 2 to 6 bases from the end, to which cholesterol or analog thereof is not bound, may be modified internucleoside linkages (e.g., phosphorothioate linkages).
At least one (e.g., three) nucleoside from the 3′ end of the second nucleic acid strand may be a modified nucleoside, such as 2′F-RNA, 2′-OMe, or the like having a high resistance to an RNase. It is preferable that the second nucleic acid strand comprises a modified nucleoside such as 2′F-RNA, or 2′-OMe at the 3′ end, because the gene suppression activity of the double-stranded nucleic acid complex is enhanced.
At the 5′ end and 3′ end of the second nucleic acid strand, 1 to 5 nucleosides from the end, to which cholesterol or analog thereof is not bound, may be modified nucleosides, such as 2′F-RNA or the like having a high resistance to an RNase.
A nucleoside in the first nucleic acid strand and the second nucleic acid strand may be a natural nucleoside (deoxyribonucleoside, ribonucleoside, or both) and/or a non-natural nucleoside.
The base sequence of the first nucleic acid strand herein is complementary to all or part of the base sequence of a target transcription product, and therefore can hybridize (or anneal) to the target transcription product. The complementarity of a base sequence can be determined by using a BLAST program or the like. Those skilled in the art can easily determine the conditions (temperature, salt concentration, and the like) under which two strands can be hybridized, taking into consideration the complementarity between the strands. In addition, those skilled in the art can easily design an antisense nucleic acid that is complementary to a target transcription product, for example, for example, based on the information on the base sequence of the target gene.
Hybridization conditions may be a variety of stringent conditions, for example, low-stringent conditions or high stringent conditions. The low-stringent conditions may be relatively low temperature and high salt concentration, for example, 30° C., 2×SSC, and 0.1% SDS. The high stringent conditions may be relatively high temperature and low salt concentration, for example, 65° C., 0.1×SSC, and 0.1% SDS. By changing the conditions such as temperature and salt concentration, the stringency of hybridization can be adjusted. Here, 1×SSC contains 150 mM sodium chloride and 15 mM sodium citrate.
The first nucleic acid strand may comprise at least four, at least five, at least six, or at least seven consecutive nucleosides that are recognized by RNase H when hybridized to a target transcription product. Typically, it may be a region comprising from 4 to 20 bases, from 5 to 16 bases, or from 6 to 12 bases of consecutive nucleosides. As the nucleoside that is recognized by RNase H, for example, a natural deoxyribonucleoside may be used. A modified deoxyribonucleoside, and a suitable nucleoside comprising other bases, are well known in the art. It is also known that a nucleoside having a hydroxy group at the 2′ position, such as a ribonucleoside, is not suitable as the above nucleoside. The suitability of a nucleoside for use in the region comprising “at least four consecutive nucleosides” can be readily determined. In an embodiment, the first nucleic acid strand may comprise at least four consecutive deoxyribonucleosides.
In an embodiment, the full length of the first nucleic acid strand is not solely composed of natural ribonucleosides. It is preferable that natural ribonucleosides are contained in not more than half of the full length, or are not contained, in the first nucleic acid strand.
In an embodiment, the second nucleic acid strand may comprise at least four consecutive ribonucleosides that are complementary to the above at least four consecutive nucleosides (e.g., deoxyribonucleosides) in the first nucleic acid strand. This is for the second nucleic acid strand to form a partial DNA-RNA heteroduplex with the first nucleic acid strand so as to be recognized and cleaved by RNaseH. The at least four consecutive ribonucleosides in the second nucleic acid strand are preferably linked by naturally occurring internucleoside linkages, namely phosphodiester linkages.
In the second nucleic acid strand, all the nucleosides may be composed of ribonucleosides and/or modified nucleosides. All the nucleosides in the second nucleic acid strand may be composed deoxyribonucleosides and/or modified nucleosides, or may comprise no ribonucleoside. In an embodiment, all the nucleosides in the second nucleic acid strand may be composed of deoxyribonucleosides and/or modified nucleosides.
The first nucleic acid strand and/or the second nucleic acid strand constituting the double-stranded nucleic acid complex of the present invention may be a gapmer. A “gapmer” herein means a single-stranded nucleic acid consisting, in principle, of a central region (DNA gap region) and wing regions positioned directly at the 5′ end and 3′ end thereof (respectively referred to as 5′ wing region and 3′ wing region). The central region in a gapmer comprises at least four consecutive deoxyribonucleosides, and the wing region comprises at least one non-natural nucleoside. Without limitation, the non-natural nucleoside comprised in the wing region usually has a higher binding strength to RNA, and a higher resistance to a nucleolytic enzyme (such as a nuclease) than a natural nucleoside. When a non-natural nucleoside constituting the wing region comprises a bridged nucleoside, or consists of the same, the gapmer is specifically referred to as a “BNA/DNA gapmer”. The number of bridged nucleosides comprised in the 5′ wing region and the 3′ wing region is at least one, and may be, for example, two or three. The bridged nucleosides comprised in the 5′ wing region and the 3′ wing region may be present consecutively or nonconsecutively in the 5′ wing region and the 3′ wing region. The bridged nucleoside may further comprise a modified nucleobase (e.g., 5-methylcytosine). When the bridged nucleoside is an LNA nucleoside, the gapmer is referred to as an “LNA/DNA gapmer”. When a non-natural nucleoside constituting the 5′ wing region and the 3′ wing region comprises or consists of a peptide nucleic acid, such a gapmer is specifically referred to as a “peptide nucleic acid gapmer”. When a non-natural nucleoside constituting the 5′ wing region and the 3′ wing region comprises or consists of a morpholino nucleic acid, such a gapmer is specifically referred to as a “morpholino nucleic acid gapmer”. The base lengths of the 5′ wing region and the 3′ wing region may be independently at least 2 base in length, for example from 2 to 10 base in length, from 2 to 7 base in length, or from 3 to 5 base in length. It is acceptable if the 5′ wing region and the 3′ wing region comprise at least one kind of non-natural nucleoside, and the 5′ wing region and the 3′ wing region may further comprise a natural nucleoside.
The first nucleic acid strand and/or the second nucleic acid strand constituting the above gapmer may be constituted in the order from the 5′ end by bridged nucleosides of from 2 to 7 base in length or 3 to 5 base in length, ribonucleosides or deoxyribonucleosides of from 4 to 15 base in length or from 8 to 12 base in length, and bridged nucleosides of from 2 to 7 base in length or from 3 to 5 base in length.
In this regard, a nucleic acid strand having a wing region only on either side of the 5′ end and the 3′ end is called a “hemi-gapmer” in the art. However, herein a hemi-gapmer is also encompassed in a gapmer.
The first nucleic acid strand and/or the second nucleic acid strand constituting the double-stranded nucleic acid complex of the present invention may be a mixmer. The term “mixmer” refers to herein a nucleic acid strand that comprises natural nucleosides and non-natural nucleosides with periodically or randomly alternating segment lengths, and does not comprise four or more consecutive deoxyribonucleosides or ribonucleosides. Among mixmers, a mixmer in which the non-natural nucleoside is a bridged nucleoside, and the natural nucleoside is a deoxyribonucleoside is specifically referred to as a “BNA/DNA mixmer”. Among mixmers, a mixmer in which the non-natural nucleoside is a peptide nucleic acid and the natural nucleoside is a deoxyribonucleoside is specifically called a “peptide nucleic acid/DNA mixmer”. Among mixmers, a mixmer in which the non-natural nucleoside is a morpholino nucleic acid, and the natural nucleoside is a deoxyribonucleoside is specifically referred to as a “morpholino nucleic acid/DNA mixmer”. A mixmer is not restricted to comprise only two kinds of nucleosides. A mixmer may comprise any number of kinds of nucleosides irrespective of a natural or modified nucleoside, or a nucleoside mimic. For example, a mixmer may comprise one or two consecutive deoxyribonucleosides separated by a bridged nucleoside (e.g., LNA nucleoside). A bridged nucleoside may further comprise a modified nucleobase (e.g., 5-methylcytosine).
At least one, at least two, at least three, or at least four nucleosides from the end (5′ end, 3′ end, or both ends) of the second nucleic acid strand may be modified nucleosides. The modified nucleoside may comprise a modified sugar and/or a modified nucleobase. The modified sugar may be a 2′-modified sugar (e.g., sugar comprising a 2′-O-methyl group). The modified nucleobase can also be 5-methyl cytosine.
The second nucleic acid strand may be constituted in the order from the 5′ end by modified nucleosides (e.g., modified nucleosides comprising a 2′-modified sugar) of from 2 to 7 base in length or 3 to 5 base in length, ribonucleosides or deoxyribonucleosides of from 4 to 15 base in length or from 8 to 12 base in length (optionally linked by modified internucleoside linkages), and modified nucleosides (e.g., a modified nucleosides comprising 2′-modified sugar) of from 2 to 7 base in length, or 3 to 5 base in length. In this case, the first nucleic acid strand may be a gapmer.
The first nucleic acid strand and the second nucleic acid strand may comprise, as a whole or in part, a nucleoside mimic or a nucleotide mimic. The nucleotide mimic may be a peptide nucleic acid and/or a morpholino nucleic acid. The first nucleic acid strand may also comprise at least one modified nucleoside. The modified nucleoside may comprise a 2′-modified sugar. This 2′-modified sugar may be a sugar comprising a 2′-O-methyl group. Therefore, an embodiment of the present invention relates to a double-stranded nucleic acid complex in which the first nucleic acid strand comprises a base sequence that can hybridize to all or part of the transcription product of a target gene, and has an antisense effect on the transcription product, the second nucleic acid strand comprises a base sequence that is complementary to the first nucleic acid strand, the first nucleic acid strand is annealed to the second nucleic acid strand, and the first nucleic acid strand comprises a morpholino nucleic acid as a whole (100%) or in part (e.g., 80% or more of the whole).
The first nucleic acid strand and the second nucleic acid strand may comprise any combination of the above modified internucleoside linkage and modified nucleoside.
The first nucleic acid strand and the second nucleic acid strand may be linked via a linker. In this case, the first nucleic acid strand and the second nucleic acid strand can be linked via a linker to form a single-strand. However, even in that case, the functional region has the same configuration as the double-stranded nucleic acid complex, and therefore such a single-stranded nucleic acid is herein also encompassed as an embodiment of the double-stranded nucleic acid complex of the present invention. The linker can be any polymer. Examples thereof include a polynucleotide, polypeptide, and alkylene. Specifically, it can be composed of a natural nucleotide such as DNA, and RNA, or a non-natural nucleotide such as a peptide nucleic acid and a morpholino nucleic acid. When a linker consists of a nucleic acid, the chain length of a linker may be at least one base, or a chain length of from 3 to 10 bases or from 4 to 6 bases. It is preferably 4 base in length. The position of the linker can be either on the 5′ side or the 3′ side of the first nucleic acid strand. For example, in the case of a configuration in which cholesterol or analog thereof is bound to the 5′ side of the second nucleic acid strand, the 5′ end of the first nucleic acid strand and the 3′ end of the second nucleic acid strand are linked via a linker. In an embodiment, the first nucleic acid strand is a hemi-gapmer with a wing region only on the 3′ end side, and the second nucleic acid strand is a nucleic acid strand that does not comprise a sugar-modified nucleoside.
The second nucleic acid strand is bound to cholesterol or analog thereof.
The second nucleic acid strand bound to cholesterol or analog thereof may have the group represented by the following Formula (I).
[wherein Rc represents a C4-C18, preferably C5-C16 alkylene group which may have a substituent (wherein the substituent is a halogen atom, or a C1-C3 alkyl group that may be substituted with a hydroxy group, such as a hydroxymethyl group, and in the alkylene group mutually non-adjacent carbon atoms may be substituted with an oxygen atom)].
Rc may be, but not limited to, —(CH2)3—O—(CH2)2—O—(CH2)2—O—(CH2)2—O—(CH2)2—, —(CH2)3—O—(CH2)2—O—(CH2)2—O—(CH2)2—O—CH2—CH(CH2OH)—, or —(CH2)6—.
A group represented by the above Formula (I) or (II) can be bound to the 5′ end or the 3′ end of the second nucleic acid strand via a phosphoester bond.
Cholesterol or analog thereof may be bound to any of the 5′ end, the 3′ end, or both the ends of the second nucleic acid strand. Further, cholesterol or analog thereof may also be bound to a nucleotide inside the second nucleic acid strand. Without limitation, cholesterol or analog thereof bound to the 5′ end of the second nucleic acid strand is particularly suitable.
When the second nucleic acid strand comprises a plurality of cholesterol or analog thereof, they may be the same or different. For example, a case in which cholesterol is bound to the 5′ end of the second nucleic acid strand and another cholesterol analog is bound to the 3′ end one each corresponds to such a case. With respect to binding positions, cholesterol or analog thereof may be bound to a plurality of positions of the second nucleic acid strand, and/or may be bound as a group to a single position. One cholesterol or analog thereof may be bound to each of the 5′ end and 3′ end of the second nucleic acid strand.
The bond between the second nucleic acid strand and cholesterol or analog thereof may be a direct bond, or an indirect bond mediated by another substance.
When the second nucleic acid strand and cholesterol or analog thereof are bound directly, it is sufficient if the latter is bound to the second nucleic acid strand via a covalent bond, an ionic bond, a hydrogen bond, or the like. A covalent bond is preferable considering that a more stable bond can be obtained.
When the second nucleic acid strand and cholesterol or analog thereof are bound indirectly, they may be bound via a linking group (herein often referred to as a “linker”). The linker may be either of a cleavable linker and an uncleavable linker.
A “cleavable linker” refers to a linker that can be cleaved under physiological conditions, for example, in a cell or in an animal body (e.g., in a human body). A cleavable linker is selectively cleaved by an endogenous enzyme such as a nuclease. Examples of a cleavable linker comprise, but not limited to, an amide, an ester, one or both esters of a phosphodiester, a phosphoester, a carbamate, and a disulfide bond, as well as a natural DNA linker. As an example, cholesterol or analog thereof may be bound via a disulfide bond.
An “uncleavable linker” refers to a linker that is not cleaved under physiological conditions, for example, in a cell or in an animal body (e.g., in a human body). Examples of an uncleavable linker comprise, but not limited to, a phosphorothioate linkage, modified or unmodified deoxyribonucleosides linked by a phosphorothioate linkage, and a linker consisting of modified or unmodified ribonucleosides. There is no particular restriction on the chain length, when a linker is a nucleic acid such as DNA, or an oligonucleotide, however it may be usually from 2 to 20 base in length, from 3 to 10 base in length, or from 4 to 6 base in length.
Specific examples of the above linker comprise linkers represented by the following Formula II.
[wherein n represents 0 or 1.]
The second nucleic acid strand may further comprise at least one functional moiety bound to the polynucleotide constituting the nucleic acid strand. A “functional moiety” refers to a moiety that confers a desired function to a double-stranded nucleic acid complex and/or the nucleic acid strand to which the functional moiety is bound. Examples of the desired function may comprise a labeling function or a purification function. Examples of the moiety that confers a labeling function comprise a compound such as a fluorescent protein and luciferase. Examples of the moiety that confers a purification function comprise a compound such as biotin, avidin, His tag peptide, GST tag peptide, and FLAG tag peptide. The binding position and type of binding of a functional moiety in the second nucleic acid strand are as described above in connection with the binding of cholesterol or analog thereof to the second nucleic acid strand.
In the double-stranded nucleic acid complex of the present invention, the antisense effect in the skeletal muscle or heart muscle on the target transcription product of the first nucleic acid strand can be measured by a method publicly known in the art. For example, after introducing a double-stranded nucleic acid complex into a cell and the like, it can be measured using a publicly known technique such as Northern blotting, quantitative PCR, or Western blotting. By measuring the expression level of a target gene or the level of a target transcription product in skeletal muscle cells or heart muscle cells (e.g., the amount of mRNA, the amount of RNA such as microRNA, the amount of cDNA, and the amount of protein), it can be judged whether or not the target gene expression is suppressed by the double-stranded nucleic acid complex in these sites. As the judgement criteria, without limitation, when the expression level of the target gene or the measurement of the target transcription product is reduced by at least 5%, at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, or at least 40% compared to the measurement of a negative control (e.g., vehicle administration), it may be judged that the double-stranded nucleic acid complex of the present invention has produced an antisense effect in the skeletal muscle or heart muscle.
An exemplary embodiment of the double-stranded nucleic acid complex of the present invention has been described above, however the double-stranded nucleic acid complex of the present invention is not limited to the above exemplary embodiment.
Those skilled in the art can produce the double-stranded nucleic acid complex of the present invention by appropriately selecting a publicly known method. Usually, without limitation, firstly each of the first nucleic acid strand and the second nucleic acid strand that constitute a double-stranded nucleic acid complex is designed and prepared. For example, the first nucleic acid strand is designed based on the information on the base sequence of the target transcription product (e.g., the base sequence of the target gene), and the second nucleic acid strand is designed as a complementary strand thereto. Then, based on the information on the designed base sequences, each nucleic acid strand is synthesized using a commercially available automatic nucleic acid synthesizer, such as that from GE Healthcare, Thermo Fisher Scientific, or Beckman Coulter. Thereafter the prepared oligonucleotides may be purified using a reverse-phase column or the like.
In the case of a double-stranded nucleic acid complex to which a functional moiety is bound, a first nucleic acid strand may be produced according to the above method. Meanwhile, with respect to a second nucleic acid strand to which a functional moiety is bound, it may be produced by performing the aforedescribed synthesis and purification using a nucleic acid species to which a functional moiety has been bound in advance. For example, a second nucleic acid strand may be produced by performing the aforedescribed synthesis and purification using a nucleic acid species to which a cholesterol or analog thereof has been bound in advance. Alternatively, cholesterol or analog thereof may be joined by a publicly known method to a second nucleic acid strand produced by performing the aforedescribed synthesis and purification. After preparation of each nucleic acid strand, a double-stranded nucleic acid complex to which the functional moiety of interest is bound can be produced by performing annealing described below for the first nucleic acid strand and the second nucleic acid strand.
The method for linking a functional moiety to a nucleic acid is well known in the art. The nucleic acids produced by this method are mixed in an appropriate buffer solution to be denatured at about 90° C. to 98° C. for several minutes (e.g., 5 min), and then the nucleic acids are annealed in a range of about 30° C. to 70° C. for about 1 to 8 hours to yield a double-stranded nucleic acid complex of the present invention. Further, a nucleic acid strand can be obtained by ordering from various manufacturers (e.g., GeneDesign Inc.) by specifying the base sequence and the modification site and type. The aforementioned annealing step can be performed by allowing the nucleic acids to stand at room temperature (about 10° C. to about 35° C.) for about 5 to 60 minutes. It is possible that the first nucleic acid strand and the second nucleic acid strand may be independently dissolved in a buffer solution (e.g., phosphate-buffered saline) or water at about 70° C. to 98° C., and the obtained two solutions are mixed, and the mixed liquid is kept at about 70° C. to 98° C. for several minutes (e.g., 5 minute), and then the same is maintained at about 30° C. to 70° C. (or 30° C. to 50° C.) for about 1 to 8 hours to prepare a double-stranded nucleic acid complex of some embodiments of the present invention. It is also possible that the first nucleic acid strand and the second nucleic acid strand are independently dissolved in a buffer solution (e.g., phosphate-buffered saline) or water at room temperature (about 10° C. to about 35° C.). The annealing conditions (time and temperature) in preparing a double-stranded nucleic acid complex are not limited to the above conditions. In addition, the conditions suitable for promoting annealing of nucleic acid strands are well known in the art.
The double-stranded nucleic acid complex of the present invention can be efficiently delivered to the skeletal muscle or heart muscle of a subject so that the antisense effect on the target gene is produced at the site to suppress the expression of the gene. Therefore, by using this double-stranded nucleic acid complex as an active ingredient, it is possible to treat or prevent a disease such as a muscle disease which may develop or advance in severity due to the expression of the target gene in the skeletal muscle or heart muscle of a subject.
The second aspect of the present invention is a pharmaceutical composition. The pharmaceutical composition of the present invention comprises the double-stranded nucleic acid complex of the first aspect as an active ingredient, and/or a delivery molecule of a drug to the skeletal muscle or heart muscle. The double-stranded nucleic acid complex of the first aspect can regulate the expression level of a target transcription product in the skeletal or heart muscle by an antisense effect. Therefore, by administering the pharmaceutical composition of the present invention to a subject, the double-stranded nucleic acid complex can be delivered to the skeletal muscle or heart muscle of the subject to treat a disease such as a muscle disease that may develop in the sites. The pharmaceutical composition of the present invention may essentially consist of the double-stranded nucleic acid complex of the first aspect. In other words, the pharmaceutical composition of the present invention may further comprise auxiliary components such as a carrier in addition to the double-stranded nucleic acid complex of the first aspect. The pharmaceutical composition of the present invention may consist solely of the double-stranded nucleic acid complex of the first aspect.
The pharmaceutical composition of the present invention can comprise an active ingredient and a carrier as essential ingredients. Each component is described in detail below.
An active ingredient is an essential constituent in the pharmaceutical composition of the present invention. The pharmaceutical composition of the present invention comprises as an active ingredient at least a double-stranded nucleic acid complex described in the first aspect above. The pharmaceutical composition of the present invention may comprise two or more kinds of the double-stranded nucleic acid complex.
The amount (content) of the double-stranded nucleic acid complex in a pharmaceutical composition varies depending on the kind of double-stranded nucleic acid complex, the site (skeletal muscle or heart muscle) to be delivered, the dosage form of the pharmaceutical composition, the dose of the pharmaceutical composition, and the kind of carrier described below. Therefore, it may be determined as appropriate by taking the respective conditions into consideration. Normally, it may be adjusted so that an effective amount of the double-stranded nucleic acid complex is contained in a single dose of the pharmaceutical composition. An “effective dose” is an amount that is necessary for the double-stranded nucleic acid complex to function as an active ingredient, and has little or no adverse side effects on the living body to which it is applied. This effective amount can vary depending on various conditions such as information on the subject, the administration route, and number of administrations. Ultimately, it may be determined by the judgment of a physician, veterinarian, pharmacist, or the like. “Information on the subject” is various information on an individual of the living body to which the pharmaceutical composition is applied. For example, when the subject is a human, it comprises age, body weight, gender, dietary habit, health status, stage of progression or grade of severity of the disease, drug sensitivity, and presence of a combined drug.
The pharmaceutical composition of the present invention may comprise a pharmaceutically acceptable carrier. A “pharmaceutically acceptable carrier” refers to an additive commonly used in the field of pharmaceutical preparation. Examples thereof include a solvent, a vegetable oil, a base, an emulsifier, a suspending agent, a surfactant, a pH adjuster, a stabilizer, a seasoning, a flavor, an excipient, a vehicle, a preservative, a binder, a diluent, an isotonizing agent, a sedative, a bulking agent, a disintegrating agent, a buffering agent, a coating agent, a lubricant, a colorant, a sweetener, a thickener, a corrective agent, a dissolution aid, and other additives.
The solvent may be any of, for example, water or other pharmaceutically acceptable aqueous medium, and a pharmaceutically acceptable organic solvent. Examples of an aqueous solution comprise a physiological saline, an isotonic solution containing glucose or another additive, a phosphate buffered saline, and a sodium acetate buffer solution. Examples of the additive comprise D-sorbitol, D-mannose, D-mannitol, sodium chloride, and further a nonionic surfactant at a low concentration, and polyoxyethylene sorbitan fatty acid ester.
The above carrier is used to avoid or suppress degradation of the double-stranded nucleic acid complex, which is an active ingredient, in vivo by an enzyme and the like, and additionally to facilitate formulation or administration, and to maintain the dosage form and drug efficacy. Therefore, it may be used as appropriate and as needed.
There is no particular restriction on the dosage form of the pharmaceutical composition of the present invention as long as the double-stranded nucleic acid complex described in the first aspect, which is an active ingredient, is delivered to the skeletal muscle or heart muscle, which is the target site, without inactivation by degradation or the like, and the pharmacological effect of the active ingredient (antisense effect on target gene expression) can be produced in vivo.
The specific dosage form varies depending on the administration method and/or medication conditions. The administration methods can be broadly classified into parenteral administration and peroral administration, and the dosage form appropriate for the respective administration methods can be selected.
When the administration method is parenteral administration, the preferred dosage form is liquid formulation which can be administered directly to the target site, or administered systemically via the circulatory system. Examples of the liquid formulation comprise an injectable. The injectable can be formulated by mixing in an appropriate combination with the aforedescribed excipient, elixir, emulsifier, suspending agent, surfactant, stabilizer, pH adjuster, etc. in the form of a unit dose required according to the generally approved pharmaceutical practices. In addition, it may be ointment, plaster, cataplasm, transdermal patch, lotion, inhalant, aerosol, eye drop, and suppository.
When the administration method is oral administration, the preferred dosage form comprises solid preparation (comprising tablet, capsule, drop, and lozenge), granule, dusting powder, powder, and liquid formulation (comprising oral liquid preparation, emulsion formulation, and syrup). In the case of a solid preparation, if necessary, it may take a dosage form with a coating as publicly known in the art, such as a sugar-coated tablet, a gelatin-coated tablet, an enteric-coated tablet, a film-coated tablets, a double layer tablet, and a multilayer tablet.
There is no particular restriction on the specific shape and size of each of the above-mentioned dosage forms, as long as the respective dosage forms are within the ranges of dosage forms publicly known in the art. As for the manufacturing method of the pharmaceutical composition of the present invention, it may be formulated according to the common procedure in the art.
Herein there is no particular restriction on the preferable dosing form of a pharmaceutical composition. For example, it can be oral administration or parenteral administration. Specific examples of the parenteral administration comprise intramuscular administration, intravenous administration, intraarterial administration, intraperitoneal administration, subcutaneous administration (comprising implanted continuous subcutaneous administration), tracheal/bronchial administration, and rectal administration, as well as administration by blood transfusion. Considering that the application target site of the present invention is the skeletal muscle or heart muscle, intramuscular injection administration and intravenous infusion administration at the target site are suitable.
When a pharmaceutical composition is applied by administration or ingestion, the administered amount or ingested amount may be, for example, from 0.00001 mg/kg/day to 10000 mg/kg/day, or from 0.001 mg/kg/day to 100 mg/kg/day for the double stranded nucleic acid complex contained in the pharmaceutical composition. A pharmaceutical composition may be applied by single-dose administration or multiple dose administration. In the case of multiple dose administration, it may be administered daily or at appropriate time intervals (e.g., at intervals of 1 day, 2 days, 3 days, 1 week, 2 weeks, or 1 month), for example, for 2 to 20 times. A single dose of the double-stranded nucleic acid complex described above may be, for example, 0.001 mg/kg or more, 0.005 mg/kg or more, 0.01 mg/kg or more, 0.25 mg/kg or more, 0.5 mg/kg or more, 1 mg/kg or more, 2.5 mg/kg or more, 0.5 mg/kg or more, 1.0 mg/kg or more, 2.0 mg/kg or more, 3.0 mg/kg or more, 4.0 mg/kg or more, 5 mg/kg or more, 10 mg/kg or more, 20 mg/kg or more, 30 mg/kg or more, 40 mg/kg or more, 50 mg/kg or more, 75 mg/kg or more, 100 mg/kg or more, 150 mg/kg or more, 200 mg/kg or more, 300 mg/kg or more, 400 mg/kg or more, or 500 mg/kg or more. For example, any dose in the range of from 0.001 mg/kg to 500 mg/kg (e.g., 0.001 mg/kg, 0.01 mg/kg, 0.1 mg/kg, 1 mg/kg, 5 mg/kg, 10 mg/kg, 50 mg/kg, 100 mg/kg, or 200 mg/kg) may be selected as appropriate.
The double-stranded nucleic acid complex of the present invention may be administered twice a week for total four times at a dose of from 0.01 to 10 mg/kg (e.g., about 6.25 mg/kg). Alternatively, the double-stranded nucleic acid complex may be administered once or twice a week for total two to four times, for example at a frequency of twice a week for total two times, at a dose of from 0.05 to 30 mg/kg (e.g., about 25 mg/kg). By adopting such a dosing regimen (divided administration), the toxicity can be lowered (e.g., avoidance of platelet reduction) compared to a single-dose administration at a higher dose, and the stress to the subject can be reduced.
Even when the pharmaceutical composition is repeatedly administered, its inhibitory effect can be produced additively in a cell. In the case of repeated administration, the efficacy can be improved with certain administration intervals (e.g., half a day or longer)
The disease to which the pharmaceutical composition is applicable are a disease that can develop or become severe as the result of expression of the target gene in the skeletal muscle or heart muscle. Examples thereof include, but not limited to, a muscle disease.
In the present invention, a “muscle disease” is a generic term for a disease that causes muscular weakness due to a muscle cell (comprising a skeletal muscle cell, or a heart muscle cell). Examples thereof include muscular dystrophy, myopathy, inflammatory myopathy (comprising polymyositis and dermatomyositis), Danon disease, myasthenic syndrome, mitochondrial disease, myoglobinuria, glycogen storage disease, periodic paralysis, hereditary cardiomyopathy, hypertrophic cardiomyopathy, dilated cardiomyopathy, and arrhythmia comprising hereditary arrhythmia. A disease that has a primary cause in another organ and can cause secondary dysfunction of a skeletal muscle or heart muscle cell is also included. Examples thereof include neurodegenerative disorder, sarcopenia, and cachexia.
The pharmaceutical composition of the present invention can deliver a specific drug to the skeletal muscle or heart muscle by binding the drug to the first nucleic acid strand and/or the second nucleic acid strand, utilizing the fact that the double-stranded nucleic acid complex of the first aspect comprised as an active ingredient can be efficiently delivered to the skeletal muscle or heart muscle. There is no particular restriction on the drug that is delivered to the skeletal muscle or heart muscle, and examples thereof include a peptide, a protein, and a nucleic acid drug as well as other organic compounds, such as an anti-tumor drug, a hormonal drug, an antibiotic, an antiviral drug, and an anti-inflammatory drug. A preferable drug is a small-molecule drug. The small-molecule drug is well understood by those skilled in the art. It refers to typically a drug with a molecular weight less than 1,000 Dalton. The drug may be also a lipophilic drug. Examples of the nucleic acid drug comprise, but not limited to, ASO, antagomiR, splice switching oligonucleotide, aptamer, single-stranded siRNA, microRNA, and pre-microRNA. The position of binding and the type of binding of the drug in the second nucleic acid strand are as described above in connection with the binding of cholesterol or analog thereof to the second nucleic acid strand.
The pharmaceutical composition can treat or prevent a muscle disease or the like which can be caused by the expression of a particular gene in the skeletal muscle or heart muscle.
The pharmaceutical composition of the present invention can be efficiently delivered to the skeletal muscle or heart muscle as disclosed in the following Examples, and can effectively suppress the expression of a target gene or the level of a target transcription product at the site. Therefore, a method for reducing the expression level of a target transcription product in the skeletal muscle or heart muscle of a subject comprising administering a pharmaceutical composition comprising the double-stranded nucleic acid complex described above to a subject is provided. The method may be a method for treating a muscle disease in a subject. Further, a method for delivering a drug to the skeletal muscle or heart muscle of a subject comprising administering a pharmaceutical composition comprising the double-stranded nucleic acid complex described above to a subject is also provided.
The in vivo inhibitory effect on the expression of mRNA in a tissue by a double-stranded nucleic acid complex agent consisting of an antisense oligonucleotide targeting the SR-B1 gene, and a tocopherol- or cholesterol-conjugated complementary strand is examined.
As a target gene, a scavenger receptor B1 (SR-B1) was selected. The names and base sequences of the first nucleic acid strand and the second nucleic acid strand constituting the double-stranded nucleic acid complex agent used in this Example are shown in Table 1.
T*C*a*g*t*c*a*t*g*a*c*t*T*C
The above first nucleic acid strand targets the murine SR-B1 gene, and is composed of a 14-mer single-stranded LNA/DNA gapmer having a base sequence that is complementary to position 2479 to 2492 of SR-B1 mRNA (GenBank Accession number NM 016741, SEQ ID NO:1), which is a transcription product of the target gene. More specifically, this LNA/DNA gapmer consists of each two LNA nucleosides from the 5′ end and the 3′ end respectively, and ten DNA nucleosides between them.
The above second nucleic acid strand is composed of a tocopherol-conjugated complementary strand RNA (Toc#1-cRNA(mSR-B1)), to which tocopherol is bound at the 5′ end, or a cholesterol-conjugated complementary strand RNA (Chol#1-cRNA(mSR-B1)), to which tocopherol is bound at the 5′ end, both of which has a sequence complementary to the first nucleic acid strand.
By annealing the first nucleic acid strand with one of the two second nucleic acid strands, a tocopherol-conjugated heteroduplex oligonucleotide (hereinafter referred to as “Toc-HDO”), or a cholesterol-conjugated heteroduplex oligonucleotide (hereinafter referred to as “Chol-HDO”), which was a double-stranded nucleic acid complex agent of the present invention, was prepared. The first nucleic acid strand was mixed with the second nucleic acid strand in equimolar amounts, the solution was heated at 95° C. for 5 min, then cooled to 37° C. and retained for 1 hour allowing the nucleic acid strand to anneal, thereby preparing the double-stranded nucleic acid complex agent. The annealed nucleic acids were stored at 4° C. or on ice. The double-stranded nucleic acid complex agent after the preparation is referred to as “Toc#1HDO(mR-B1)” or “Chol#1HDO(mSR-B1)”.
A conventional single-stranded antisense oligonucleotide (ASO) (control ASO) was used as a reference for comparison with a double-stranded nucleic acid complex agent. This control ASO has the same configuration as the first nucleic acid strand of the double-stranded nucleic acid complex agent. The single-stranded ASO after preparation was designated as “ASO(mSR-B1)”.
As the mice to which a double-stranded nucleic acid complex agent or the like is administered, 6 to 7 week-old male C57BL/6 mice of body weight 20 g were used. In this and following Examples, all experiments using mice were conducted with n=4.
The double-stranded nucleic acid complex agent and the control ASO(mSR-B1) were intravenously injected through the tail vein into a mouse at a dose of 50 mg/kg respectively in a single-dose administration. In addition, mice injected with PBS only in a single-dose administration were also produced as a negative control group.
At the time point of 72 hours after the administration, PBS was perfused into the mice, and then the mice were dissected to isolate the heart muscle, quadriceps muscle, diaphragm, and musculi dorsi proprii. Then mRNA was extracted from each tissue using a high-throughput fully automated nucleic acid extraction device MagNA Pure 96 (Roche Life Science) according to the protocol. cDNA was synthesized according to the protocol attached to Transcriptor Universal cDNA Master (Roche Life Science). Quantitative RT-PCR was performed with TaqMan (Roche Life Science). As the primers used in the quantitative RT-PCR, the products designed and produced by Thermo Fisher Scientific based on various gene numbers were used. The PCR conditions (temperature and time) were 95° C. for 15 sec, 60° C. for 30 sec, and 72° C. for 1 sec as 1 cycle, and 40 cycles were repeated. The amplified product thus obtained was quantified by quantitative RT-PCR, and based on the result, the expression level of mRNA (SR-B1)/expression level of mRNA (ACTB: internal standard gene) were calculated respectively to obtain a relative expression level. The mean value and standard error of the relative expression levels were calculated. Further, the results of the individual groups were compared, and evaluated by t-test.
The results are shown in
Both the Toc#1HDO(mSR-B1) and Chol#1HDO(mSR-B1) showed significant inhibitory effects on the expression of the target gene in various skeletal muscles and the heart muscle compared to the single-stranded control ASO(mSR-B1).
The in vivo inhibitory effect on the expression of mRNA in a tissue by a single-dose administration of a double-stranded nucleic acid complex agent targeting the malat1 gene in which the second nucleic acid strand consists of a tocopherol- or cholesterol-conjugated complementary strand was examined.
The metastasis associated lung adenocarcinoma transcription product (malat1) was selected as a target gene. The names and base sequences of the first nucleic acid strand and the second nucleic acid strand constituting the double-stranded nucleic acid complex agent used in this Example are shown in Table 2.
C*T*A*g*t*t*c*a*
The above first nucleic acid strand targets the murine malat1 gene, and is composed of a 16-mer single-stranded LNA/DNA gapmer having a base sequence that is complementary to position 1316 to 1331 targeting malat1 noncoding RNA (GenBank Accession number NR_002847, SEQ ID NO:3), which is a transcription product of the target gene. More specifically, this LNA/DNA gapmer consists of each three LNA nucleosides from the 5′ end and the 3′ end respectively, and ten DNA nucleosides between them.
Meanwhile, the second nucleic acid strand is composed of a tocopherol-conjugated complementary strand RNA (Toc#1-cRNA(mMalat1)), to which tocopherol is bound at the 5′ end, or a cholesterol-conjugated complementary strand RNA (Chol#1-cRNA(mMalat1)), to which cholesterol is bound at the 5′ end, both of which have a sequence complementary to the first nucleic acid strand.
The above first nucleic acid strand was mixed with either of two kinds of the second nucleic acid strands in equimolar amounts, the solution was heated at 95° C. for 5 min, then cooled to 37° C. and retained for 1 hour allowing the two nucleic acid strands to anneal, thereby preparing the double-stranded nucleic acid complex agent described above. The annealed nucleic acids were stored at 4° C. or on ice. The double-stranded nucleic acid complex agent after the preparation is referred to as “Toc#1HDO(mMalat1)” or “Chol#1HDO(mMalat1)”.
A conventional single-stranded antisense oligonucleotide (ASO) (control ASO) was used as a reference for comparison with a double-stranded nucleic acid complex agent. This control ASO has the same configuration as the first nucleic acid strand of the double-stranded nucleic acid complex agent. The single-stranded ASO after preparation was designated as “ASO(mMalat1)”.
As the mice to which a double-stranded nucleic acid complex agent or the like is administered, 6 to 7 week-old male C57BL/6 mice of body weight 20 g were used.
The double-stranded nucleic acid complex agent and the control ASO were intravenously injected through the tail vein into each mouse at a dose of 50 mg/kg in a single-dose administration. In addition, mice injected with PBS only in a single-dose administration were also produced as a negative control group.
At the time point of 72 hours after the administration, PBS was perfused into the mice, and then the mice were dissected to isolate the heart muscle, quadriceps muscle, diaphragm, and musculi dorsi proprii. Then mRNA was extracted from each tissue using a high-throughput fully automated nucleic acid extraction device MagNA Pure 96 (Roche Life Science) according to the protocol. cDNA was synthesized according to the protocol attached to Transcriptor Universal cDNA Master (Roche Life Science). Quantitative RT-PCR was performed with TaqMan (Roche Life Science). As the primers used in the quantitative RT-PCR, the products designed and produced by Thermo Fisher Scientific based on various gene numbers were used. The PCR conditions (temperature and time) were 95° C. for 15 sec, 60° C. for 30 sec, and 72° C. for 1 sec as 1 cycle, and 40 cycles were repeated. The amplified product thus obtained was quantified by quantitative RT-PCR, and based on the result, the expression level of mRNA (malat1)/the expression level of mRNA (ACTB; internal standard gene) were calculated respectively to obtain a relative expression level. The mean value and standard error of the relative expression levels were calculated. Further, the results of the individual groups were compared, and evaluated by t-test.
The results are shown in
Both the Toc#1HDO(mMalat1) and Chol#1HDO(mMalat1) showed significant inhibitory effects on the expression of the target gene in various skeletal muscles and the heart muscle compared to the single-stranded control ASO(mMalat).
The in vivo inhibitory effect on the expression of mRNA in a tissue by a single-dose administration of a double-stranded nucleic acid complex agent consisting of an antisense oligonucleotide targeting the DMPK gene and a tocopherol- or cholesterol-conjugated complementary strand was examined as in Examples 1 and 2.
The DMPK (dystrophia myotonica-protein kinase) gene was selected as a target gene. The DMPK gene encoding a myotonin-protein kinase is known to be the responsible gene for myotonic dystrophy, which is the most frequent form of muscular dystrophy in adults. It is thought that an abnormal elongation of the CTG repeat sequence present in the 3′ untranslated region of the DMPK gene is a cause of the disease.
The names and base sequences of the first nucleic acid strand and the second nucleic acid strand constituting the double-stranded nucleic acid complex agent used in this Example are shown in Table 3.
A*C*A*a*t*a*a*a*
The above first nucleic acid strand targets the murine DMPK gene, and is composed of a 16-mer single-stranded LNA/DNA gapmer having a base sequence that is complementary to position 2682 to 2697 targeting DMPK mRNA (GenBank Accession number NM 032418, SEQ ID NO:5), which is a transcription product of the target gene. More specifically, this LNA/DNA gapmer consists of each three LNA nucleosides from the 5′ end and the 3′ end respectively, and ten DNA nucleosides between them.
The above second nucleic acid strand is composed of a tocopherol-conjugated complementary strand RNA (Toc#1-cRNA(mDMPK)), to which tocopherol is bound at the 5′ end, or a cholesterol-conjugated complementary strand RNA (Chol#1-cRNA(mDMPK)), to which cholesterol is bound at the 5′ end, both of which have a sequence complementary to the first nucleic acid strand.
By annealing the above first nucleic acid strand with either of the second nucleic acid strands, Toc-HDO, or cholesterol-conjugated heteroduplex oligonucleotide Chol-HDO, which was a double-stranded nucleic acid complex agent of the present invention, was prepared. Specifically, the first nucleic acid strand and the second nucleic acid strand were mixed in equimolar amounts, the solution was heated at 95° C. for 5 min, then cooled to 37° C. and retained for 1 hour allowing the two nucleic acid strands to anneal, thereby preparing the double-stranded nucleic acid complex agent. The annealed nucleic acids were stored at room temperature, 4° C., or on ice. The double-stranded nucleic acid complex agent after the preparation is referred to as “Toc#1HDO(mDMPK)” or “Chol#1HDO(mDMPK)”.
A conventional single-stranded antisense oligonucleotide (ASO) (control ASO) was used as a reference for comparison with a double-stranded nucleic acid complex agent. This control ASO has the same configuration as the first nucleic acid strand of the double-stranded nucleic acid complex agent. The single-stranded ASO after preparation was designated as “ASO(mDMPK)”.
As the mice to which a double-stranded nucleic acid complex agent or the like was administered, 6 to 7 week-old male C57BL/6 mice of body weight 20 g were used.
The double-stranded nucleic acid complex agent and the control ASO were intravenously injected through the tail vein into each mouse at a dose of 12.5 mg/kg, 25 mg/kg, or 50 mg/kg in a single-dose administration. In addition, mice injected with PBS only in a single-dose administration were also produced as a negative control group.
At the time point of 72 hours after the administration, PBS was perfused into the mice, and then the mice were dissected to isolate the heart muscle (Heart), quadriceps muscle (Quadriceps), diaphragm (Diaphragm), musculi dorsi proprii (Back), tibialis anterior muscle (TA), gastrocnemius muscle (GC), and triceps brachii muscle (TB). Then mRNA was extracted from each tissue using a high-throughput fully automated nucleic acid extraction device MagNA Pure 96 (Roche Life Science) according to the protocol. cDNA was synthesized according to the protocol attached to Transcriptor Universal cDNA Master (Roche Life Science). Quantitative RT-PCR was performed with TaqMan (Roche Life Science). As the primers used in the quantitative RT-PCR, the products designed and produced by Thermo Fisher Scientific based on various gene numbers were used. The PCR conditions (temperature and time) were 95° C. for 15 sec, 60° C. for 30 sec, and 72° C. for 1 sec as 1 cycle, and 40 cycles were repeated. The amplified product thus obtained was quantified by quantitative RT-PCR, and based on the result, the expression level of mRNA (DMPK)/the expression level of mRNA (ACTB; internal standard gene) were calculated respectively to obtain a relative expression level. The mean value and standard error of the relative expression levels were calculated. Further, the results of the individual groups were compared, and evaluated by t-test.
The results are shown in
Both the Toc#1HDO(mDMPK) and Chol#1HDO(mDMPK) showed significant inhibitory effects on the expression of the target gene in various skeletal muscles and the heart muscle compared to the single-stranded control ASO(mDMPK). The effects of Chol#1HDO(mDMPK) were particularly remarkable in a dose-dependent manner.
The in vivo inhibitory effect on the expression of a target gene in the heart muscle and skeletal muscle by a single-dose administration of a double-stranded nucleic acid complex agent to which tocopherol or cholesterol was bound in which the second nucleic acid strand is composed of DNA was examined.
α-tocopherol and cholesterol are bound to the second nucleic acid strand in the basic structure of the double-stranded nucleic acid complex agent in this Example. It differs from Example 2 in that the second nucleic acid strand is composed entirely of DNA. The names and base sequences of the first nucleic acid strand and the second nucleic acid strand constituting the double-stranded nucleic acid complex agent used in this Example are shown in Table 4.
C*T*A*g*t*t*c*a*
As the above first nucleic acid strand, the first nucleic acid strand prepared in Example 2 was used.
The second nucleic acid strand has a sequence complementary to the first nucleic acid strand and cholesterol bound to the 5′ end thereof, as in the cholesterol-conjugated complementary strand RNA (Chol#1-cRNA(mMalat1)) of the second nucleic acid strand prepared in Example 2, but is entirely composed of DNA unlike the second nucleic acid strand in Example 2.
The preparation of the double-stranded nucleic acid complex agent was in accordance with the method described in Example 2. A double-stranded nucleic acid complex agent prepared using Toc#1-cDNA(mMalat1) as the second nucleic acid strand is called “Toc#1DNA/DNA”, and a double-stranded nucleic acid complex agent prepared using Chol#1-cDNA(mMalat1) is called “Chol#1DNA/DNA”. Meanwhile, as the comparison reference for the double-stranded nucleic acid complex agent, a single-stranded antisense oligonucleotide (ASO) (ASO(mMalat1)) was used.
The basic procedure was in accordance with the method described in Example 2. The double-stranded nucleic acid complex agent was administered to mice in a single dose at 50 mg/kg.
At 72 hours after the final administration, PBS was perfused into the mice, and then the mice were dissected to isolate separately each of the heart muscle, quadriceps muscle, and the diaphragm. RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 mRNA were performed in accordance with Example 2.
The results are shown in
Even when cholesterol was bound to the second nucleic acid strand composed solely of DNA, a significant inhibitory effect on the expression of the target gene in various skeletal muscles and the heart muscle was confirmed compared to the single-stranded control ASO(mMalat), or tocopherol.
The in vivo inhibitory effect of the double-stranded nucleic acid complex composed of a cholesterol-conjugated complementary strand composed solely of DNA as in Example 4 having various modification patterns of internucleoside linkages administered in a single dose on the expression of a target gene in the heart muscle and skeletal muscle was examined.
As a target gene, malat1 was selected. The names and base sequences of the first nucleic acid strand and the second nucleic acid strand constituting the double-stranded nucleic acid complex agent used in this Example are shown in Table 5.
C*T*A*g*t*t*c*a*
t*a*g
In Chol#1-cDNA(mMalat1) (PS), phosphorothioate linkages are present between all the nucleosides, and in Chol#1-cDNA(mMalat1) (PO), phosphodiester linkages are present between all the nucleosides.
The preparation of the double-stranded nucleic acid complex agent was in accordance with the method described in Example 2. A double-stranded nucleic acid complex agent prepared using Chol#1-cDNA(mMalat1) as the second nucleic acid strand is called “Chol#1DNA/DNA”, a double-stranded nucleic acid complex agent prepared using Chol#1-cDNA(mMalat1) (PS) is called “Chol#1DNA/DNA-PS”, and a double-stranded nucleic acid complex agent prepared using Chol#1-cDNA(mMalat1) (PO) is called “Chol#1DNA/DNA-P0”.
The basic procedure was in accordance with the method described in Example 2. The double-stranded nucleic acid complex agent was administered to mice in a single dose at 50 mg/kg.
At the time point of 72 hours after the administration, PBS was perfused into the mice, and then the mice were dissected to isolate separately each of the heart muscle, diaphragm, and musculi dorsi proprii. RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 mRNA were performed in accordance with Example 2.
The results are shown in
The in vivo inhibitory effect of the double-stranded nucleic acid complex in which the second nucleic acid strand is composed of a cholesterol-conjugated complementary strand having various modification patterns of internucleoside linkages administered in a single dose in the heart muscle and skeletal muscle was examined.
As the target gene, malat1 was selected. The names and base sequences of the first nucleic acid strand and the second nucleic acid strand constituting the double-stranded nucleic acid complex agent used in this Example are shown in Table 6.
C*T*A*g*t*t*c*a*
Internucleoside linkages of Chol#1-cRNA(mMalat1)(PO) is composed solely of phosphorothioate linkages with no modification. Meanwhile, Chol#1-cRNA(mMalat1)(5′PS) and Chol#1-cRNA(mMalat1)(3′PS) have a configuration in which respectively 3 internucleoside linkages from the 5′ end to which cholesterol is bound and 3′ end, respectively, are phosphorothioate linkages (PS).
The preparation of the double-stranded nucleic acid complex agent was in accordance with the method described in Example 2. A double-stranded nucleic acid complex agent prepared using ASO(mMalat1) as the first nucleic acid strand and Chol#1-cRNA(mMalat1)(PO) as the second nucleic acid strand is called “Chol #1HDO(PO)”, a double-stranded nucleic acid complex agent prepared using Chol#1-cRNA(mMalat1)(5′PS) is called “Chol#1HDO(5′PS)”, and a double-stranded nucleic acid complex agent prepared using Chol#1-cRNA(mMalat1)(3′PS) is called “Chol#1HDO(3′PS)”.
The basic procedure was in accordance with the method described in Example 2. The double-stranded nucleic acid complex agent was administered to mice in a single dose at 50 mg/kg. Mice to which only PBS was administered were also produced as a negative control group.
At the time point of 72 hours after the administration, PBS was perfused into the mice, and then the mice were dissected to isolate separately each of the heart muscle, quadriceps muscle, diaphragm, and musculi dorsi proprii. RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 mRNA were performed in accordance with Example 2.
The results are shown in
All the double-stranded nucleic acid complexes significantly suppressed the expression of malat1 non-coding RNA. In particular, when there were modified internucleoside linkages from the 3′ end such as in Chol#1HDO(3′PS) the inhibitory activity on the expression tended to increase.
The in vivo inhibitory effect on the expression of mRNA in a tissue by multiple doses of a double-stranded nucleic acid complex agent consisting of an antisense oligonucleotide targeting the malat1 gene and a tocopherol- or cholesterol-conjugated complementary strand was examined.
As double-stranded nucleic acid complex agents, Toc#1HDO(mMalat1) and Chol#1HDO(mMalat1) prepared in Example 2 were used, and ASO(mMalat1) was used as a single-stranded control ASO.
As the mice to which the double-stranded nucleic acid complex agent or the like was administered, 6 to 7 week-old male C57BL/6 mice of body weight 20 g were used.
The double-stranded nucleic acid complex agent and the control ASO were intravenously injected through the tail vein into each mouse at 50 mg/kg per each dose. The administration was given for a total of four doses over four weeks. In addition, mice injected with PBS only in a single dose were also produced as a negative control group.
At the time point of 72 hours after the final administration, PBS was perfused into the mice, and then the mice were dissected to isolate the heart muscle, quadriceps muscle, diaphragm, and musculi dorsi proprii. Then mRNA was extracted from each tissue using a high-throughput fully automated nucleic acid extraction device MagNA Pure 96 (Roche Life Science) according to the protocol. cDNA was synthesized according to the protocol attached to Transcriptor Universal cDNA Master (Roche Life Science). Quantitative RT-PCR was performed with TaqMan (Roche Life Science). As the primers used in the quantitative RT-PCR, the products designed and produced by Thermo Fisher Scientific based on various gene numbers were used. The PCR conditions (temperature and time) were 95° C. for 15 sec, 60° C. for 30 sec, and 72° C. for 1 sec as 1 cycle, and 40 cycles were repeated. The amplified product thus obtained was quantified by quantitative RT-PCR, and based on the result, the expression level of mRNA (malat1)/the expression level of mRNA (ACTB; internal standard gene) were calculated respectively to obtain a relative expression level. The mean value and standard error of the relative expression levels were calculated. Further, the results of the individual groups were compared, and evaluated by t-test.
The results are shown in
It was found that multiple doses of both Toc#1HDO(mMalat1) and Chol#1HDO(mMalat1) further enhanced the inhibitory effects on the expression of the target gene (malat1) in various skeletal muscles and the heart muscle.
The in vivo inhibitory effect on the expression of mRNA in a tissue by multiple doses of a double-stranded nucleic acid complex agent consisting of an antisense oligonucleotide targeting the DMPK gene and a cholesterol-conjugated complementary strand was examined.
As the double-stranded nucleic acid complex agent, Chol#1HDO(mDMPK) prepared in Example 3 was used.
As the mice to which a double-stranded nucleic acid complex agent or the like was administered, 6 to 7 week-old male C57BL/6 mice of body weight 20 g were used.
The double-stranded nucleic acid complex agent was intravenously injected through the tail vein into each mouse at 50 mg/kg per each dose. The dose was given twice a week for a total of four doses. In addition, mice injected with PBS alone by a single-dose administration were also produced as a negative control group.
At the time point of 72 hours after the final administration, PBS was perfused into the mice, and then the mice were dissected to isolate separately each of the heart muscle, quadriceps muscle, diaphragm, and musculi dorsi proprii. Then RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of DMPK mRNA were performed in accordance with Example 8.
The results are shown in
It was found that multiple doses of Chol#1HDO(mDMPK) further enhanced the inhibitory effects on the expression of the target gene (DMPK) in various skeletal muscles and the heart muscle compared to the negative control (PBS only).
An experiment for evaluating the in vivo inhibitory effect over a long period of time on the expression of mRNA in a tissue in the heart muscle and skeletal muscle by a single-dose administration of a double-stranded nucleic acid complex agent was investigated.
As the double-stranded nucleic acid complex agent, Chol#1HDO(mMalat1) prepared in Example 2 was used.
The double-stranded nucleic acid complex agent was administered in a single dose to mice in the same manner as in Example 2.
On day 3, day 7, day 14, day 28, day 56, and day 168 from the administration, PBS was perfused into the mice, and then the mice were dissected to isolate the heart muscle, quadriceps muscle, diaphragm, musculi dorsi proprii, liver, kidney, colon, and lung. Then RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 non-coding RNA were performed according to the method described in Example 2.
The results are shown in
It was found from
The in vivo inhibitory effect by single-dose administration on the expression of mRNA in a tissue in the heart muscle and skeletal muscle when a double-stranded nucleic acid complex was administered at various doses was examined.
The double-stranded nucleic acid complex agent Chol#1HDO(mMalat1) prepared in Example 2 was used.
The double-stranded nucleic acid complex agent Chol#1HDO (mMalat1) was injected intravenously into mice through the tail vein in a single-dose administration at 12.5 mg/kg, 25.0 mg/kg, 50 mg/kg, or 75 mg/kg.
At 72 hours after the administration, PBS was perfused into the mice, and then the mice were dissected to isolate separately each of the heart muscle, quadriceps muscle, diaphragm, and musculi dorsi proprii.
RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 mRNA were performed in accordance with Example 2.
The results are shown in
The in vivo inhibitory effect by single-dose administration of a double-stranded nucleic acid complex agent in which cholesterol and a saturated fatty acid group are bound to the second nucleic acid strand on the expression of mRNA in a tissue in the heart muscle and skeletal muscle was examined.
As the target gene, malat1 was selected as in Example 2. As the first nucleic acid strand constituting the double-stranded nucleic acid complex agent used in this Example, the first nucleic acid strand described in Example 2, namely the 16-mer single-stranded LNA/DNA gapmer ASO(mMalat1) targeting the malat1 non-coding RNA, which was the transcription product of the murine malat1 gene, was used. Meanwhile, the second nucleic acid strand was a strand which had a sequence complementary to the first nucleic acid strand, and to which cholesterol was bound at the 5′ end or 3′ end, having a configuration that a linker (C6) consisting of a C6 saturated fatty acid group (hexyl group) is present between cholesterol and an end of the second nucleic acid strand. The names of the respective second nucleic acid strands are shown in Table 7.
C*T*A*g*t*t*c*a*
g*c*a*UUCAGUGAA
A double-stranded nucleic acid complex agent of the present invention was prepared by annealing the first nucleic acid strand above with either 5′Chol(C6)-cRNA(mMalat1) or 3′Chol(C6)-cRNA(mMalat1) of the second nucleic acid strand. The specific preparation method was as in Example 2. The prepared double-stranded nucleic acid complex agents are referred to as 5′Chol(C6)HDO and 3′Chol(C6)HDO.
The basic procedure was in accordance with the method described in Example 2. The double-stranded nucleic acid complex agent was administered to the mice in a single dose at 50 mg/kg.
At the time point of 72 hours after the administration, PBS was perfused into the mice, and then the mice were dissected to isolate the heart muscle (Heart), quadriceps muscle (Quadriceps), diaphragm (Diaphragm), and musculi dorsi proprii (Back). RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 were performed in accordance with the methods described in Example 2.
The results are shown in
The in vivo inhibitory effects on the mRNA expression in a tissue by double-stranded nucleic acid complex agents having different lengths with respect to the target gene were examined.
As the target gene, malat1 was selected as in Example 2. As the first nucleic acid strand composing the double-stranded nucleic acid complex agent used in this Example, the first nucleic acid strands described in Example 2, namely the 13-mer and 16-mer single-stranded LNA/DNA gapmer ASO(mMalat1) targeting the malat1 non-coding RNA, which was the transcription product of the murine malat1 gene, were used. The second nucleic acid strands were a strand complementary to each of the first nucleic acid strands, and had a configuration in which cholesterol was bound to the 5′ end. The names and sequences of the first nucleic acid strands and the second nucleic acid strands used in this Example are shown in Table 8.
C*T*A*g*t*t*c*a*
G*T*T*c*a*c*t*g*
The prepared 16mer and 13mer double-stranded nucleic acid complex agents are referred to as “16mer Chol-HDO” and “13mer Chol-HDO”, respectively.
The basic procedure was in accordance with the method described in Example 2. The double-stranded nucleic acid complex agent was administered to the mice in a single dose at 50 mg/kg.
At the time point of 72 hours after the administration, PBS was perfused into the mice, and then the mice were dissected to isolate the heart muscle (Heart), quadriceps muscle (Quadriceps), diaphragm (Diaphragm), and musculi dorsi proprii (Back). RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 were performed in accordance with the methods described in Example 2.
The results are shown in
Significant inhibitory effects on the expression were confirmed for both 13mer Chol-HDO and 16mer Chol-HDO compared to the negative control PBS. Especially, 13mer Chol-HDO exhibited remarkable effects.
The long-term in vivo inhibitory effect on the expression by a double-stranded nucleic acid complex administered subcutaneously in a single dose was examined.
The double-stranded nucleic acid complex agent Chol#1 HDO (malat1) prepared in Example 2 was used.
The double-stranded nucleic acid complex agent was administered subcutaneously in a single dose to mice at 50 mg/kg in this Example although the basic procedures were in accordance with the method described in Example 7.
At the time points of day 7, day 14, and day 28 after the subcutaneous administration, PBS was perfused into the mice, and then the mice were dissected to isolate the heart muscle (Heart), quadriceps muscle (Quadriceps), and diaphragm (Diaphragm). RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 were performed in accordance with the method described in Example 2.
The results are shown in
It was demonstrated that the double-stranded nucleic acid complex agent of the present invention could maintain the inhibitory effect on the expression of the target gene over a long period of time not only by intravenous injection but also by subcutaneous administration.
The toxicity of the cholesterol-conjugated double-stranded nucleic acid complex of the present invention and cholesterol-conjugated ASO administered to the living body was examined.
The name and base sequence of the first nucleic acid strands constituting the single-stranded nucleic acid complexes used in this Example are shown in Table 9.
C*T*A*g*t*t*c*a*
C*T*A*g*t*t*c*a*
C*T*A*g*t*t*c*a*
The above first nucleic acid strand has a configuration in which cholesterol is bound to the 5′ end or 3′ end of the ASO(mMalat1) described in the Example above and targeting the murine malat1 gene, via a DNA linker (ccttc) or without the linker.
The basic procedure was in accordance with the method described in Example 2. A double-stranded nucleic acid complex agent was administered to mice subcutaneously or intravenously in a single dose at 50 mg/kg.
Blood samples were taken from the individual mice 72 hours after the administration, and the measurement of blood counts was outsourced to LSI Medience.
The results are shown in
The objective is to evaluate the exon skipping effect and dystrophin expression in the muscles throughout the body by multiple dose administration of a double-stranded nucleic acid complex consisting of an antisense oligonucleotide (morpholino oligomer) for which the boundary region of exon 23/intron 23 of mdx mice (Duchenne muscular dystrophy model mice) is the target for exon skipping, and a tocopherol-conjugated complementary strand.
An experiment for evaluating the in vivo effect for induction of exon skipping and the expression of a dystrophin protein in a tissue by the double-stranded nucleic acid agent consisting of an antisense oligonucleotide targeting exon 23/intron 23 of the murine dystrophin gene, and a tocopherol-conjugated complementary strand was conducted.
The double-stranded nucleic acid complex agent was compared to the conventional single-stranded antisense oligonucleotide (ASO) serving as a control. The control (ASO) was a 25 mer single-stranded morpholino targeting the exon 23/intron 23 of the pre-mRNA of the murine dystrophin gene. This 25-mer ASO is composed entirely of morpholino. This morpholino has a base sequence complementary to position 83803536 to 83803512 of the murine dystrophin pre-mRNA (GenBank Accession number: NC_000086.7). A tocopherol-conjugated heteroduplex oligonucleotide (Toc-HDO), which was a double-stranded nucleic acid agent, was prepared by annealing the morpholino (first strand) with tocopherol-conjugated Toc#1-cRNA (mDystrophin). The first strand and the second strand were mixed in equimolar amounts, and the solution was heated at 95° C. for 5 min, then cooled to 37° C. and held for 1 hour. In this way the nucleic acid strands were annealed to form the above double-stranded nucleic acid agent. The annealed nucleic acid was stored at 4° C. or on ice. The prepared double-stranded nucleic acid agent is referred to as Toc#1HDO.
The names and base sequences of the first strand and second strand used in this Example are shown in Table 10.
ggccaaacctcggctt
acctgaaat
c*c
The mice were 6 to 7 week-old male mdx mice of body weight 20 g. All experiments using mice were performed with n=4. Toc#1HDO was intravenously injected into mice at a dose of 100 mg/kg through a vein. The administration was carried out once a week for a total of five times. In addition, mice injected with PBS only or PMO instead of Toc#1HDO were also produced as negative control groups.
Two weeks after the final administration, PBS was perfused into the mdx mice, and then the mice were dissected to isolate the heart muscle, quadriceps muscle, and diaphragm. Then, mRNA was extracted from each tissue with ISOGEN. For 200 ng of the extracted total RNA, One-Step RT-PCR was performed using a Qiagen One Step RT-PCR Kit (Qiagen). A reaction solution was prepared according to the protocol attached to the kit. As a thermal cycler, LifeECO (manufactured by Bioer Technology) was used. According to the applied RT-PCR program, a reverse transcription reaction was performed at 42° C. for 30 min, then thermal denaturation was performed at 95° C. for 15 min, then the cycle of [94° C. for 30 sec; 60° C. for 30 sec; and 72° C. for 60 sec] was repeated to conduct 35 cycles of PCR amplification reaction, and the final elongation reaction was performed at 72° C. for 7 min.
The base sequences of the forward (Fw) primer and reverse (Rv) primer used for the RT-PCR were as follows.
For 1 μL of the reaction product of the above RT-PCR, an analysis was performed using an Agilent DNA1000 kit and the Bioanalyzer 2100 (manufactured by Agilent Technologies). The electrophoresis diagram of the Bioanalyzer 2100 is shown in
In mdx mice, there is an abnormal stop codon in exon 23. Therefore, in the mRNA (B) in which exon 23 is not skipped, the subsequent exons are not translated, and normal dystrophin is not expressed. On the other hand, in the mRNA (A), in which exon 23 is skipped, although the mRNA becomes shorter because exon 23 is not included, normal dystrophin is expressed. Based on the measurements of “A” and “B”, the skipping efficiency was determined according to the following formula.
Skipping efficiency (%)=A/(A+B)×100
A muscle sample was sliced on a cryostat (Leica CM3050 S) into 25 μM×40 pieces and then dissolved in 150 μL of a buffer (125 mM Tris-HCl pH 6.4, 10% glycerol, 4% SDS, 4 M urea, 10% mercaptoethanol, 0.005% BPB, H2O).
The solution was then sonicated, heated at 100° C.×3 min, centrifuged at 1000 g×5 min, and the supernatant was recovered.
Proteins were electrophoresed using a 4-15% gradient 10-well (Mini-PROTEAN® TGX Precast Gels). After transferred to a membrane, a rabbit anti-dystrophin antibody (Abcam ab15277-rabbit) was used as a primary antibody and an HRP-conjugated goat anti-rabbit IgG antibody (The Jackson Laboratory) was used as a secondary antibody to perform Western blotting. Finally, the luminescence was evaluated with a SuperSignal West Dura Extended Duration Substrate (Thermo Fisher) on a ChemiDoc Imaging System (Bio-Rad Laboratories, Inc.).
Subsequently, a 10 μM-thick thin slice was prepared by sectioning the muscle sample on a cryostat (Leica CM3050 S) and placed on a cover slip (MAS-02, Matsunami Glass Ind., Ltd.). The glass slide was dipped in acetone cooled at −30° C. for 10 min to be cooled down. TBS was poured to soak the sample for adjusting to TBS. Then after blocking with 5% goat serum, the sample was treated with the primary antibody solution of the rabbit anti-dystrophin antibody (Abcam ab15277-rabbit) ( 1/400)/5% goat serum/0.25% Tween 20/TBS, and incubated overnight. The primary antibody solution was washed off three times with 0.25% Tween 20/TBS, and then the sample was incubated for 1 hour with the secondary antibody solution of the goat anti-rabbit IgG antibody (Invitrogen; Alexa Fluor 568) ( 1/1000)/5% goat serum/0.25% Tween 20/TBS. The secondary antibody solution was washed off three times with 0.25% Tween 20/TBS, and the specimen was encapsulated in VECTASHIELD, and then observed under a microscope BZ-X700 (Keyence Corporation), and the immunostaining diagram was photographed.
The results of the skipping efficiency are shown in
The objective is to evaluate the exon skipping effect and dystrophin expression in the muscles throughout the body by single dose administration of a double-stranded nucleic acid complex (Chol-HDO) consisting of an antisense oligonucleotide (morpholino oligomer) for which the boundary region of exon 23/intron 23 of mdx mice is the target for exon skipping, and a cholesterol-conjugated complementary strand. The basic evaluation method is the same as in Example 15.
The first strand of the double-stranded nucleic acid complex agent used was that prepared in Example 15. By annealing the first strand with cholesterol conjugated Chol#1-cRNA(mDystrophin), a cholesterol-conjugated heteroduplex oligonucleotide (Chol-HDO) was prepared as the double-stranded nucleic acid agent. The first strand and the second strand were mixed in equimolar amounts, and the solution was heated at 95° C. for 5 min, then cooled to 37° C. and held for 1 hour to anneal the nucleic acid strands thereby preparing the aforedescribed double-stranded nucleic acid agent. The annealed nucleic acid was stored at 4° C. or on ice. The prepared double-stranded nucleic acid agent is referred to as Chol#1HDO.
The names and base sequences of the first nucleic acid strand and the second nucleic acid strand used in this Example are shown in Table 11.
ggccaaacctcggctt
acctgaaat
g*c*c
As for mice, 6 to 7 week-old male mdx mice of body weight 20 g were used. All experiments were performed with n=1. Chol#1HDO was intravenously injected into the mouse at a dose of 100 mg/kg via the orbital vein. The number of doses was a single dose. Mice injected with PBS, PMO only, or Toc-HDO instead of Chol#1HDO were produced as negative control groups as references for comparison.
Expression analysis was performed in accordance with the method described in Example 15.
The results are shown in
The objective is to evaluate the exon skipping effect and dystrophin expression in the muscles throughout the body by single dose subcutaneous administration of a double-stranded nucleic acid complex consisting of an antisense oligonucleotide (mixmer oligomer) for which the boundary region of exon 23/intron 23 of mdx mice is the target for exon skipping, and a tocopherol-conjugated complementary strand. The basic evaluation method is the same as in Example 15.
The double-stranded nucleic acid complex agent was compared to the conventional single-stranded antisense oligonucleotide (ASO) serving as a control. The control (ASO) was a 13 mer single-stranded mixmer targeting the exon 23/intron 23 of the pre-mRNA of the murine dystrophin gene. This ASO is composed of LNA and DNA, and has a base sequence complementary to the murine dystrophin pre-mRNA (GenBank Accession number: NC_000086.7). A tocopherol-conjugated heteroduplex oligonucleotide (Toc-HDO) which was a double-stranded nucleic acid agent, was prepared by annealing the above mixmer as the first strand with tocopherol-conjugated Toc#1-cRNA (mDystrophin). The first strand and the second strand were mixed in equimolar amounts, and the solution was heated at 95° C. for 5 min, then cooled to 37° C. and held for 1 hour to anneal the nucleic acid strands thereby preparing the above double-stranded nucleic acid agent. The annealed nucleic acid was stored at 4° C. or on ice. The prepared double-stranded nucleic acid agent is referred to as Toc#2HDO.
The names and base sequences of the first nucleic acid strand and second nucleic acid strand used in this Example are shown in Table 12.
As for mice, 6 to 7 week-old male mdx mice of body weight 20 g were used. All experiments were performed with n=2. Toc#2HDO was subcutaneously injected into the mice at a dose of 100 mg/kg. The number of administration was single. Mice injected with PBS only, or a single-stranded mixmer instead of Toc#2HDO were also produced as negative control groups.
Expression analysis was performed in accordance with the method described in Example 17.
The results are shown in
The in vivo inhibitory effect on the mRNA expression in a tissue was examined by administering in a single dose the double-stranded nucleic acid complex agent (Chol#1HDO(mMalat1)) targeting the malat1 gene and consisting of a double-stranded nucleic acid complex in which cholesterol was bound to the second nucleic acid strand, or a nucleic acid molecule obtained by self-annealing a single-stranded nucleic acid in which the first nucleic acid strand and a cholesterol-conjugated complementary strand are linked by an RNA linker.
As the target gene malat1 was selected. As the double-stranded nucleic acid complex agent, Chol#1HDO(mMalat1) prepared in Example 2 was used. The name and base sequence of the single-stranded nucleic acid in which the first nucleic acid strand (ASO) and the complementary strand (cholesterol-conjugated cRNA) Chol#1-cRNA(mMalat1) are linked by an RNA linker are shown in Table 13. Chol#1sHDO(mMalat1) (or CholsHDO) was prepared by self-annealing the single-stranded nucleic acid as illustrated in
C*T*A*g*t*t*c*a*
G*C
The basic procedure was in accordance with the method described in Example 2. The prepared nucleic acid was administered to mice in a single dose at 50 mg/kg in terms of ASO.
At the time point of 72 hours from the administration, PBS was perfused into the mice, and then the mice were dissected to isolate separately each of the heart muscle, quadriceps muscle, diaphragm, and musculi dorsi proprii. RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 mRNA were performed in accordance with Example 2.
The results are shown in
The in vivo inhibitory effect on the mRNA expression in a tissue was examined by administering in a single dose the double-stranded nucleic acid complex agent (Chol#1HDO(mMalat1)) targeting the malat1 gene and consisting of a double-stranded nucleic acid complex in which cholesterol was bound to the second nucleic acid strand, or a nucleic acid (3′ Chol(TEG)HDO(mMalat1)) having a configuration in which the second nucleic acid strand had a sequence complementary to the first nucleic acid strand, and cholesterol was bound at the 3′ end, and further a linker (TEG) consisting of tetraethylene glycol was present between the cholesterol and the end of the second nucleic acid strand.
As the target gene, malat1 was selected as in Example 2. The double-stranded nucleic acid complex agent (Chol#1HDO(mMalat1)) used in Example 2, and as the first nucleic acid strand, the first nucleic acid strand described in Example 2, namely the 16-mer single-stranded LNA/DNA gapmer ASO(mMalat1) targeting the malat1 non-coding RNA, which was the transcription product of the murine malat1 gene, were used. Meanwhile, the double-stranded nucleic acid complex agent of the present invention was prepared by annealing the above first nucleic acid strand with the second nucleic acid strand 3′Chol(TEG)-cRNA(mMalat1). The specific preparation method was in accordance with Example 2. The prepared double-stranded nucleic acid complex agent is referred to as “3′Chol(TEG)HDO”. The respective names and base sequences of the first and second nucleic acid strands are as shown in Table 14.
C*T*A*g*t*t*c*a*
g*c*a*UUCAGUGAA
The basic procedure was in accordance with the method described in Example 2. The double-stranded nucleic acid complex agent was administered to mice in a single dose at 50 mg/kg.
At the time point of 72 hours after the administration, PBS was perfused into the mice, and then the mice were dissected to isolate the heart muscle (Heart), quadriceps muscle (Quadriceps), diaphragm (Diaphragm), and musculi dorsi proprii (Back). RNA extraction from each of the obtained tissues, cDNA synthesis, quantitative RT-PCR, and evaluation of the expression level of malat1 were performed in accordance with the methods described in Example 2.
The results are shown in
The objective is to evaluate the effect on the motor ability of multiple doses administration of the double-stranded nucleic acid complex (Chol-HDO or Toc-HDO) consisting of an antisense oligonucleotide (morpholino oligomer) targeting the exon 23/intron 23 boundary region in mdx mice for exon skipping and a cholesterol-conjugated complementary strand or a tocopherol-conjugated complementary strand.
As the first strand of the double-stranded nucleic acid complex agent used, the first strand prepared in Example 15 was used. By annealing the first strand with cholesterol-conjugated Chol#1-cRNA(mDystrophin), or tocopherol-conjugated Toc#1-cRNA(mDystrophin), a cholesterol-conjugated heteroduplex oligonucleotide (Chol-HDO) and a tocopherol-conjugated heteroduplex oligonucleotide (Toc-HDO) were prepared as the double-stranded nucleic acid agent. The first strand and the second strand were mixed in equimolar amounts, and the solution was heated at 95° C. for 5 min, then cooled to 37° C. and held for 1 hour to anneal the nucleic acid strands thereby preparing the above double-stranded nucleic acid agent. The annealed nucleic acid was stored at 4° C. or on ice. The prepared double-stranded nucleic acid agents are referred to as Chol#1HDO and Toc#1HDO.
The names and base sequences of the first nucleic acid strand and the second nucleic acid strand used in this Example are shown in Table 15.
ggccaaacctcggctt
acctgaaat
g*c*c
c*c
Chol#1HDO or Toc#1HDO was intravenously injected into mice through a vein at a dose of 100 mg/kg. The administration was carried out once a week for a total of five doses. In addition, mice injected with PBS only or PMO instead of Chol#1HDO and Toc#1HDO were also produced as a negative control group, and B10 (normal mice) were designated as a positive control.
One week or more after the fifth and final administration, an exercise tolerance test was performed. The exercise tolerance test was performed on a treadmill for both rats and mice (belt-type forced running device) (MK-680S, Muromachi Kikai Co., Ltd.) under conditions with electrical stimulation and without inclination. The speed was 5 m/min for 5 min from the test start, and then increased by 1 m/min every minute, and the running duration was measured.
The results are shown in
The objective is to evaluate the effect on the grip power and motor ability by multiple doses administration of the double-stranded nucleic acid complex (Chol-HDO or Toc-HDO) consisting of an antisense oligonucleotide (morpholino oligomer) targeting the exon 23/intron 23 boundary region in mdx mice for exon skipping and a cholesterol-conjugated complementary strand or a tocopherol-conjugated complementary strand.
The preparation method for the nucleic acid complex agent used in this Example was in accordance with the method described in Example 20. The names and sequences of the first nucleic acid strand and the second nucleic acid strand used in this Example are also as shown in Table 15.
The mice used in this Example and the administration method of the nucleic acid complex agent were in accordance with Example 20.
One week or more after the fifth and final administration, a grip power measurement test was performed. For the grip power measurement test, a grip power measuring device for mouse (MK-380CM, Muromachi Kikai Co., Ltd.), a stainless steel net (Muromachi Kikai Co., Ltd., MK-380CM-F/MM) and a digital force gauge (DS2-50N, IMADA Co., Ltd.) were used. The tail of a mouse holding the wire net with its forelimbs was pulled, and the tension when the mouse released the wire net was measured. The measurements were repeated three times and the mean value was calculated.
One week or more after the fifth and final administration, a wire hanging test was performed. The wire hanging test was performed by allowing a mouse to cling to a wire net, followed by overturning the wire net, and measuring the time period (hang time) until the mouse fell down from the net. The product of the mouse's body mass (g) and the hang time (s) was calculated and defined as the holding impulse (s*g) [Holding impulse (s*g)=Body mass (g)×Hang time (s)]. The mean value of the two measurements was calculated.
The results are shown in
In the blood of a mdx mouse, the concentrations of a creatine kinase (CK), an aspartate aminotransferase (AST), and an alanine aminotransferase (ALT) that are derived from muscles are elevated. Therefore, the objective is to evaluate the levels of CK, AST, and ALT in the serum after multiple doses administration of the double-stranded nucleic acid complex (Chol-HDO or Toc-HDO) consisting of an antisense oligonucleotide (morpholino oligomer) targeting the exon 23/intron 23 boundary region in mdx mice for exon skipping and a cholesterol-conjugated complementary strand or a tocopherol-conjugated complementary strand.
The preparation method for the nucleic acid complex agent used in this Example was in accordance with the method described in Example 20. The names and sequences of the first nucleic acid strand and the second nucleic acid strand used in this Example are also as shown in Table 15.
The mice used in this Example and the administration method of the nucleic acid complex agent were in accordance with Example 20.
One week or more after the fifth and final administration, the blood was taken from the mouse and the serum was separated. The obtained serum was sent to SRL Inc. for the measurements of CK, AST, and ALT.
The results are shown in
The objective is to evaluate the effect on the heart muscle function by multiple doses administration of the double-stranded nucleic acid complex (Chol-HDO or Toc-HDO) consisting of an antisense oligonucleotide (morpholino oligomer) targeting the exon 23/intron 23 boundary region in mdx mice for exon skipping and a cholesterol-conjugated complementary strand or a tocopherol-conjugated complementary strand.
The preparation method for the nucleic acid complex agent used in this Example was in accordance with the method described in Example 20. The names and sequences of the first nucleic acid strand and the second nucleic acid strand used in this Example are also as shown in Table 15.
The mice used in this Example and the administration method of the nucleic acid complex agent were in accordance with Example 20.
One week or more after the fifth and final administration, an electrocardiogram measurement was performed. The electrocardiogram measurement was performed under isoflurane anesthesia using a PowerLab 2/26 PL2602 with 2 analog input channels, and a High Performance Differential Bio Amplifier ML132. The QT time was corrected with the RR interval to calculate a corrected QT time (QTc).
The results are shown in
The objective is to evaluate the expression of the dystrophin protein in the heart muscle and quadriceps muscle by multiple doses administration of the double-stranded nucleic acid complex (Chol-HDO or Toc-HDO) consisting of an antisense oligonucleotide (morpholino oligomer) targeting the exon 23/intron 23 boundary region in mdx mice for exon skipping, and a cholesterol-conjugated complementary strand or a tocopherol-conjugated complementary strand.
The preparation method for the nucleic acid complex agent used in this Example was in accordance with the method described in Example 20. The names and sequences of the first nucleic acid strand and the second nucleic acid strand used in this Example are also as shown in Table 15.
The mice used in this Example and the administration method of the nucleic acid complex agent were in accordance with Example 20.
One week or more after the fifth and final administration, mice were dissected and expression analyses by Western blotting and immunostaining were performed. The method of expression analysis was in accordance with the method described in Example 15. However, in this Example, also Western blotting of vinculin was performed together as a control. An anti-vinculin antibody (anti-Vinculin (hVIN-1) antibody; Novus Biologicals, NB600-1293) was used at 1/1000.
The results are shown in
| Number | Date | Country | Kind |
|---|---|---|---|
| 2019-073832 | Apr 2019 | JP | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/JP2020/015818 | 4/8/2020 | WO | 00 |
