The invention relates to the field of the production, purification and characterization of various isoforms of nucleotide pyrophosphatase/phosphodiesterase (NPPase) especially of rice and barley, and to the applications of this enzyme in the determination of levels of nucleotide sugars, and of sulphonucleotides, as well as in the production of transgenic plants in which there is overexpression of cDNA's of the genes that code for the said isoforms of NPPase, giving rise to plants with reduced content of starch and cell-wall polysaccharides and high resistance to salinity and temperature.
Starch is the principal storage form of carbohydrates in plants. It is accumulated in large quantities in organs such as seeds (wheat, barley, maize, pea, etc.) and tubers (potato and yam among others), and is a fundamental constituent of the human diet. On the other hand, starch is a polymer that is often used in the paper, cosmetic, pharmaceutical and food industries, and is also used as a basic component for the manufacture of biodegradable plastics and environment-friendly paints. Another polysaccharide, cellulose, is a fundamental component of the cell wall of plants, constituting the fundamental raw material in such important processes as papermaking. Consequently, investigation of the processes involved in the synthesis of these polymers of glucose is given priority in various areas of industrial production. UDPglucose (UDPG) is the fundamental precursor of the biosynthesis of cellulose and of cell-wall polysaccharides. It is also the precursor molecule of processes connected with the glycosylation of proteins and lipids. On the other hand, ADPglucose (ADPG) is the universal precursor of the biosynthesis of starch in storage tissues of plants. Its concentration in the cell is determining for the quantity and quality of the starch produced by the plant. Considerations of the factors that govern the endogenous levels of ADPG and UDPG in the plant cell have basically revolved around their synthesizing enzymes, such as ADPG pyrophosphorylase, UDPG pyrophosphorylase and sucrose synthase (Preiss, (1988) “Biosynthesis of starch and its regulation”. The Biochemistry of Plants. Vol. 14, Academic Press, New York, pp. 182-249; Pozueta-Romero, J., Perata, P., Akazawa, T. (1999) “Sucrose-starch conversion in heterotrophic tissues”. Crit. Rev. Plant Sci. 18, 489-525). However, there has been little study of the mechanisms responsible for the degradation of these nucleotide sugars (Feingold, D. S., Avigad, G. (1980) “Sugar transformation in plants”. The Biochemistry of Plants. Vol. 3, Stumpf, P. K. and Conn, E. E. eds. Academic Press, New York, pp. 101-170). There are indications that both bacteria and mammals possess enzymatic mechanisms capable of hydrolysing ADPG and UDPG (Melo, A., Glaser, L. (1966) “Nucleotide diphosphate hexose pyrophosphatases”. Biochem. Biophys. Res. Commun. 22, 524-531; Bessman, M. J., Frick, D. N., O'Handley, S. F. (1996) “The MutT proteins or Nudix hydrolases, a family of versatile, widely distributed housecleaning enzymes”. J. Biol. Chem. 271, 25059-25062; Rodríguez, P., Bass, S. T., Hansen, R. G. (1968) “A pyrophosphatase from mammalian tissues specific for derivates of ADP”. Biochim. Biophys. Acta, 167, 199-201; Gasmi, L., Cartwright, J. L., McLennan, A. G. (1999) “Cloning, expression and characterization of YSA1H, a human adenosine 5′-diphosphosugar pyrophosphatase possessing a MutT motif”. Biochem. J. 331-337; Moreno-Bruna, B., Baroja-Fernández, E., Muñoz, F. J., Bastarrica-Berasategui, A., Zandueta-Criado, A., Rodríguez-López, M., Akazawa, T., Pozueta-Romero, J. (2001) “Adenosine diphosphate sugar pyrophosphatase prevents glycogen biosynthesis in Escherichia coli”. Proc. Natl. Acad. Sci. 98, 8128-8132). In plants, activity of this kind has barely been described in the literature (Salvucci, M. E., Crafts-Brandner, S. J. (1995) “Purification and properties of a unique nucleotide pyrophosphatase/phosphodiesterase I that accumulates in soybean leaves in response to fruit removal”. Plant Physiol. 108, 1269-1276; Rodríguez-López, M., Baroja-Fernández, E., Zandueta-Criado, A., Pozueta-Romero, J. (2000) “Adenosine diphosphate glucose pyrophosphatase: a plastidial phosphodiesterase that prevents starch biosynthesis”. Proc. Natl. Acad. Sci., 97, 8705-8710; Baroja-Fernández, E., Zandueta-Criado, A., Rodríguez-López, M., Akazawa, T., Pozueta-Romero, J. (2000) “Distinct isoforms of ADPglucose pyrophosphatase and ADPglucose pyrophosphorylase occur in the suspension-cultured cells of sycamore (Acer pseudoplatanus L.). FEBS Lett. 480, 277-282; Rodríguez-López, M., Baroja-Fernández, E., Zandueta-Criado, A. Moreno-Bruna, B. Muñoz, F. J., Akazawa, T., Pozueta-Romero, J. (2001) “Two isoforms of a nucleotide-sugar pyrophosphatase/phosphodiesterase from barley leaves (Hordeum vulgare L.) are distinct oligomers of HvGLP1, a germin-like protein”. FEBS Lett. 490, 44-48).
In various industries, starch is a basic essential as a viscosity-increasing and gelling agent. The biosynthesis of starch in the plant cell starting from ADPG takes place in the subcellular compartment called the plastid. ADPG is both synthesized and utilized in this compartment, and therefore the levels of starch can be controlled by controlling the processes that regulate the ADPG levels. The various applications of starch produced in a plant are based on the balance of amylose and amylopectin, which determines the structure of the starch granule, as well as its viscosity in aqueous suspensions. The ratio of amylose to amylopectin depends on the concentration of ADPG in the plant cell. To date, no method is known for regulating the characteristics of the starch produced in a plant by controlling the degradation of ADPG, which the enzyme described in the present invention, can provide. In addition to acting as a storage substance for the plant, starch accumulates in the plant cell in circumstances where the plant is not subject to conditions of water stress. In conditions where the plant is subjected to high temperatures or high concentrations of salts in the environment, the plant stops accumulating starch, and produces large quantities of soluble sugars that accumulate in the vacuole (Keeling, P. L., Bacon, P. J., Holt, D. C. (1993) “Elevated temperature reduces starch deposition in wheat endosperm by reducing the activity of soluble starch synthase” Planta 191, 342-348; Geigenberger, P., Geiger, M., Stitt, M. (1998) “High-temperature perturbation of starch synthesis is attributable to inhibition of ADP-glucose pyrophosphorylase by decreased levels of glycerate-3-phosphate in growing potato tubers” Plant Physiol. 117, 1307-1316). In addition to these adaptive changes of carbohydrate metabolism to water stress, the plant undergoes changes in its sulphur metabolism, avoiding the accumulation of adenosine-5′-phosphate (PAP) arising from the transformation of adenosine 5′-phosphosulphate (APS) and 3′-phosphoadenosine 5′-phosphosulphate (PAPS) (Gil-Mascarell, R., López-Coronado, J. M., Bellés, J. M., Serrano, R., Rodríguez, P. L. (1999) “The Arabidopsis HAL2-like gene family includes a novel sodium-sensitive phosphatase” Plant J. 17, 373-383). On the basis of these observations, it is possible that enzymatic reactions responsible for the hydrolysis of ADPG, APS and PAPS are responsible for adaptive processes of the plant to the conditions of water stress.
Chromatographic and radiological techniques are powerful tools for determining levels of nucleotides such as sulphonucleotides (APS and PAPS among others; Yoshida, H., Fukui, S., Yamashina, I., Tanaka, T., Sakano, T., Usui, T., Shimotsuji, T., Yabuuchi, H., Owada, M., Kitagawa, T. (1982) “Elevation of nucleotide pyrophosphatase activity in skin fibroblasts from patients with Lowe's syndrome”. Biochem. Biophys. Res. Commun. 107, 1144-1150) and nucleoside diphosphate sugars (such as the derivatives of glucose, ribose, mannose, galactose, glucuronic acid, fructose and galacturonic acid) in raw extracts of animal, plant or microbial origin. Although of very general use, they require a considerable investment in equipment and in the preparation of the test samples. Unfortunately, apart from a few exceptions (Puhakainen, E., Saarinen, A., Hänninen, 0. (1977) “UDPglucuronic acid pyrophosphatase assay with the aid of alkaline phosphatase” Acta Chem. Scandinavica B31, 125-129) scant use is made of possible alternative methods that permit the detection and quantification of nucleotide sugars and sulphonucleotides in a simple and efficient manner. Analysis of the blood, muscle, kidney and liver levels of some of the aforementioned nucleotide sugars is important in clinical practice (Cortes, P., Dumler, F., Sastry, K. S., Verghese, C. P., Levin, N. W. (1982) “Effects of early diabetes on uridine diphosphosugar synthesis in the rat renal cortex”. Kidney Int. 21, 676-682; Spiro, M. J. (1984) “Effect of diabetes on the sugar nucleotides in several tissues of the rat” Diabetologia 26, 70-75; Sochor, M., Kunjara, S., Baquer, N. Z., McLean, P. (1991) “Regulation of glucose metabolism in livers and kidneys of NOD mice”. Diabetes 40, 1467-1471). For example, since UDPG is the precursor of glycogen in animals, analysis of the levels of this molecule can be important in the investigation and diagnosis of diseases associated with carbohydrate metabolism, such as various types of diabetes. On the other hand, determination of the levels of PAPS in the urine is essential for the diagnosis of serious illnesses such as Lowe's syndrome or antiphospholipid syndrome (Yoshida, H., Fukui, S., Yamashina, I., Tanaka, T., Sakano, T., Usui, T., Shimotsuji, T., Yabuuchi, H., Owada, M., Kitagawa, T. (1982) “Elevation of nucleotide pyrophosphatase activity in skin fibroblasts from patients with Lowe's syndrome”. Biochem. Biophys. Res. Commun. 107, 1144-1150; Amigo, M. C., García-Torres, T. (2000) “Morphology of vascular, renal, and heart lesions in the antiphospholipid syndrome: relationship to pathogenesis” Curr. Rheumatol. Rep. 2000, 2, 262-270). Obviously the possibility of analysing, simply and inexpensively, the levels of these substances in a sample represents an advantageous alternative to the chromatographic techniques.
The invention describes the purification and applications of an enzymatic product of plant origin that we designate NPPase, which catalyses the hydrolysis of small molecules with phosphodiester or phosphosulphate bonds and in particular ADPG and APS, as the preferred substrates. In the first priority (ES 200201647), with the experimental data available to them at that time, the inventors tentatively designated the enzymatic product isolated as NSPPase, but in the later, second priority (ES 200202673), with the data that had been accumulated, its designation was changed to NPPase as at present.
The plant enzyme of the invention has various isoforms in the plant tissues from which it can be obtained (Baroja-Fernández, E., Zandueta-Criado, A., Rodríguez-López, M., Akazawa, T., Pozueta-Romero, J. (2000) “Distinct isoforms of ADPglucose pyrophosphatase and ADPglucose pyrophosphorylase occur in the suspension-cultured cells of sycamore (Acer pseudoplatanus L.). FEBS Lett. 480, 277-282). The isoform that is simplest to extract is the one we call soluble, whereas other isoforms, which we can call particulates, are found firmly adhering to the starch granules.
In the present invention we succeeded in purifying and partially sequencing various soluble isoforms of NPPase of barley and rice with approximate sizes of 70 kDa. On the basis of these sequences, we were able to isolate the cDNA's that code for the NPPases. After comparing their sequences with those available in databases, it was observed that the NPPases of rice and barley share homology with PPD1, a nucleotide phosphatase/phosphodiesterase of Lupinus luteus which, in contrast to the NPPase of this invention, has as its best substrates the di- and tri-phosphate nucleosides but does not hydrolyse nucleotide sugars (Olczak, M., Olczak, T. (2002) “Diphosphonucleotide phosphatase/phosphodiesterase from yellow lupin (Lupinus luteus L.) belongs to a novel group of specific metallophosphatases”. FEBS Lett. 519, 159-163). Moreover, it shares homology with other sequences that code for unknown or possible proteins of dicotyledonous plants such as Arabidopsis and chickpea. One object of the invention is, firstly, the production, characterization and sequencing of various soluble 70-kDa isoforms of NPPase in substantially pure form, starting from plant tissues of barley (Hordeum vulgare) and rice (Oryza sativa). Another object is the production of complete cDNA's that code for the NPPases and contrasting them with sequences available in databases. The design of constructions derived from the cDNA's of the soluble NPPases intended for the production of transgenic plants with high NPPase activity whose content and quality of the starch, as well as that of cell-wall polysaccharides, are modified relative to control plants, is detailed later. The said plants do not accumulate the marker of osmotic toxicity PAP, so that they are more resistant to high concentrations of salts than the control plants.
Another object of the invention is the method used for making devices or kits for determination of nucleoside diphosphate sugars and sulphonucleotides based on the use of the enzymatic product with NPPase activity.
The plant product with NPPase enzyme activity according to the invention can be obtained and purified starting from any plant tissue from any species, i.e. any monocotyledon or dicotyledon, for example barley (Hordeum vulgare), wheat (Triticum aestivum), rice (Oryza sativa), pepper (Capsicum annuum), tomato (Lycopersicon sculentum), potato (Solanum tuberosum), Arabidopsis (Arabidopsis thaliana), or sycamore (Acer pseudoplatanus L.), to cite just some of the numerous representative examples of different families and genera.
Production and Purification of a Soluble Isoform of NPPase:
The general method for obtaining and purifying the soluble plant NPPase described in the invention includes the following steps, in which slight variations are admissible that do not substantially alter the general scheme of the method of extraction and purification. NPPase is especially abundant in young leaves and is practically absent from storage tissues such as endosperms of seeds and tubers, accordingly it is recommended to use young leaves for the extraction of NPPase.
1. Homogenization of the plant tissue with an extraction buffer.
2. Filtration through four layers of Miracloth® (filter cloth for milk whey used in cheesemaking).
3. Ultracentrifugation of the filtered homogenate.
4. Precipitation of the proteins of the supernatant in ammonium sulphate.
5. Resuspension of the precipitate in buffer with pH of 4.2.
6. Heating for at least 15 minutes at a temperature between 60 and 65° C.
7. Centrifugation.
8. Concentration of the supernatant and purification of the protein by gel-filtration chromatography. The enzyme activity of NPPase is detected by detecting the production of G1P and AMP in samples incubated with substrates such as UDPG or ADPG.
9. Application of the NPPase to affinity column chromatography of the Concanavalin A type, which indicates that the NPPase is glycosylated.
10. Isoelectric focusing in a Multiphor II system, using PAGplates with pH range between 3.5 and 9.5 (Amersham/Pharmacia). The position of the NPPase can be determined easily in one of the following ways:
a) Elution of the protein followed by detection of the production of G1P in the presence of ADPG or UDPG.
b) Incubation of the gel in a solution with bis-paranitrophenylphosphate (bis-PNPP) and development in a basic solution as described by Nishimura and Beevers (Nishimura, M., Beevers, H. (1978). Plant Physiol. 62, 44-48).
11. Separation of the protein in denaturing gel by electrophoresis in a system of neutral or slightly acid buffers such as NuPAGE 4-12% Bis-Tris (Novex, San Diego, Calif.). The position of the NPPase can be determined easily in one of the following ways:
a) Elution of the protein followed by detection of the production of G1P in the presence of ADPG.
b) Incubation of the gel in a solution with bis-PNPP and development in a basic solution.
Identification of the Product with NPPase Enzyme Activity
The enzyme product obtained by the methods described above, or other equivalent methods, is identified by means of the following functional standards:
Production of a Complete cDNA that Codes for the Soluble NPPase
Some known internal amino acid sequences of the various NPPases purified were compared with others present in the databases. The result of this analysis made it possible to design two primers that were used for obtaining, by RT-PCR, a cDNA that codes for an NPPase of rice and of barley. The cDNA's obtained were cloned in the pGEM-T vector and were used as probes for searching for a complete cDNA in the cDNA library of young rice leaves. The complete cDNA obtained was introduced in the EcoRV restriction site of the plasmid pSK Bluescript (Stratagene) giving rise to the construction pNPP (
Production of Transgenic Plants that Overexpress the cDNA of Soluble NPPase
pNPP was digested successively with the enzymes HindIII, T4 DNA polymerase and XbaI. The fragment released (which contains the cDNA of NPPase) was cloned in the plasmid pVT′BSP after being digested successively by the enzymes NcoI, T4 DNA polymerase and XbaI. In this way we obtain a plasmid designated p35SNPPNOS which has the constitutive promoter 35S, the cDNA of NPPase and the Nos terminator.
To be able to transfer this construction to the genome of the plants via Agrobacterium tumefaciens, it is necessary for it to be cloned previously in a binary plasmid. For this, p35SNPPNOS was digested successively with the enzymes HindIII, T4 DNA polymerase and XbaI and was cloned within the binary plasmid pBIN20 (Hennegan, K. P., Danna, K. J. “pBIN20: An improved binary vector for Agrobacterium-mediated transformation” Plant Mol. Biol. Rep. 16, 129-131) which had previously been digested successively with the enzymes HindIII, T4 DNA polymerase and XbaI. The plasmid thus obtained was designated with the name of pBIN20-35S-NPP (
Preparation of Devices (Assay Kits) for Determination of Nucleoside Diphosphate Sugars and Sulphonucleotides
The kits designed for the determination of nucleotides such as nucleoside diphosphate sugars and sulphonucleotides are based on the action of the product with NPPase activity on phosphodiester and phosphosulphate bonds of small molecules which, after being hydrolysed, give rise to other molecules that are easy to detect and quantify.
The two most suitable strategies for making these kits start from the hydrolysis of the nucleoside diphosphate sugar by the enzyme according to the present invention, i.e. NPPase, producing equimolar quantities of sugar-1-phosphate and of the corresponding nucleoside monophosphate. From here on, consideration can be given to determination of the quantity of nucleotide initially present in the sample based on determination of the quantity of sugar-1-phosphate and nucleoside monophosphate produced, as specified below:
The strategy for determination of levels of sulphonucleotides such as APS is based on the hydrolysis of these nucleotides and consequent production of equimolar quantities of sulphate, which can be determined by turbidimetry or by nephelometry (Sörbo, B. (1987) “Sulfate: turbidimetric and nephelometric methods” Methods Enzymol. 143, 3-6).
Production of Polyclonal Antibodies Specific to Plant NPPase
Two milligrams of purified NPPase were separated in SDS-PAGE. After being eluted, it was mixed with complete Freund's adjuvant (at 50/50 ratio) and was then aliquoted in three equal fractions, each of which was injected into a rabbit at intervals of two weeks. Approximately three months after the first injection, the blood serum of the rabbit was extracted, which contains the polyclonal antibodies specific to AGPPase.
Identification of the Product by Western Blotting
Samples of proteins from wild plants and transgenic plants that overexpress the gene that codes for NPPase of rice were separated by SDS-PAGE. Then they were transferred to nitrocellulose membranes and the NPPase was detected using the specific anti-NPPase antibody according to the methodology described in the literature (Towbin, H., Staehelin, T., Gordon, J. (1979) “Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedures and some applications” Proc. Natl. Acad. Sci. USA 76, 4350-4354.
Examples are presented below which describe in detail the method of production and purification of the soluble NPPase of young barley leaves. The same method, with slight changes appropriate to each case, can be applied to any other species. Other examples describe the use of NPPase for the production of assay kits for determination of nucleotide sugars and sulphonucleotides. Another example shows the production of a complete cDNA that codes for soluble NPPase.
All the steps were carried out at 4° C., unless indicated otherwise. The plant tissue (900 g) was homogenized with 2900 mL of extraction buffer (Mes 50 mM pH 6, EDTA 1 mM, DTT 2 mM) using a Waring blender. The homogenate was filtered through four layers of Miracloth, centrifuged at 100 000 g for 30 minutes and the supernatant was adjusted to 50% of ammonium sulphate. The precipitate obtained after 30 minutes of centrifugation at 30 000 g (20° C.) was resuspended in 2900 mL of Mes 50 mM pH 4.2, then heated on a water bath at 62° C. for 20 minutes, cooled in ice, and centrifuged at 30 000 g for 20 minutes. The proteins of the supernatant were precipitated using 50% ammonium sulphate, and resuspended in 5.7 mL of Mes 50 mM pH 6. Then the sample was submitted to gel filtration in a Superdex 200 column (Pharmacia LKB Biotechnology, Uppsala, Sweden) pre-equilibrated with Mes pH 6 and NaCl 150 mM. The fractions with NPPase activity were combined, concentrated, and submitted to isoelectric focusing in a native gel, permitting purification of the protein to homogeneity (
Unless stated otherwise, all the enzymatic reactions took place at 37° C. The determinations of NPPase activities were performed using spectrophotometric determination of G1P in two steps described by Sowokinos (1981) (Sowokinos, 1981, Plant Physiol. 68, 924-929). The reaction mixture contained Hepes 50 mM pH 7, the specified quantity of ADPG and the protein extract in a total volume of 50 microlitres. All the assays were performed relative to an ADPG blank. After 20 minutes of incubation, the reaction was stopped by boiling in a dry bath for 2 minutes. The mixture was centrifuged at 20 000 g for 5 minutes and the supernatant was recovered. In the second step, G1P was determined spectrophotometrically in 300 microlitres of mixture containing Hepes 50 mM−pH 7, EDTA 1 mM, MgCl2 2 mM, KCl 15 mM, NAD+ 0.6 mM, one unit of phosphoglucomutase and one unit of glucose-6-phosphate dehydrogenase from Leuconostoc mesenteroides, and 30 microlitres of the supernatant resulting from step 1. After 20 minutes of incubation, the production of NADH was monitored at 340 nm using a Multiskan EX spectrophotometer (Labsystems). The amount of NADH produced by any protein extract in the absence of ADPG in step 1 was negligible.
The native molecular weight of the NPPase was determined by gel filtration by plotting the partition coefficient (Kav) against the logarithm of the molecular weight of the following protein standards: bovine thyroglobulin (670 kDa), bovine gamma-globulin (158 kDa), ovalbumin (45 kDa), myoglobin (17 kDa) and vitamin B-12 (1.3 kDa). The protein content was determined by Bradford's method using the reagent made by Bio-Rad and gamma-globulin as standard.
Table 1 presented below shows the purification of soluble NPPase starting from barley leaves. The unit (U) is defined as the quantity of enzyme that catalyses the production of 1 μmol of product per minute.
The product with NPPase activity thus obtained complies with the following characteristics:
Internal sequences (obtained after partial hydrolysis of NPPase with trypsin): SEQ ID NO: 8, 9, 10, 11, 12, 13, 14, 15, 16 and 17.
Knowledge of internal sequences of rice NPPase made it possible to design primers which, in the direction 5′-3′, are SEQ ID NO: 18 and 19. Using this primer, a cDNA was amplified by conventional methods of RT-PCR and was used as a probe for obtaining cDNA's from cDNA libraries from young leaves of rice and barley. As a result, a complete cDNA of rice NPPase was obtained and was inserted in a pSK Bluescript plasmid (Stratagene) which was amplified in the host bacterium XL1 Blue. The sequence of the complete cDNA of rice NPPase is SEQ ID NO: 20 and the amino acid deduced is SEQ ID NO: 21. An incomplete cDNA of barley NPPase was also obtained (SEQ ID NO: 22) and its deduced amino acid sequence is SEQ ID NO: 23. For this, the primer represented by SEQ ID NO: 24 was eliminated. After comparing with sequences available in databases, it was observed that the rice NPPase possesses 60% homology with PPD1 (access No. AJ421009), a nucleotide phosphatase/phosphodiesterase of L. luteus that hydrolyses nucleoside di- and tri-phosphates but is unable to hydrolyse nucleotide sugars (Olczak, M., Olczak, T. (2002) “Diphosphonucleotide phosphatase/phosphodiesterase from yellow lupin (Lupinus luteus L.) belongs to a novel group of specific metallophosphates”. FEBS Lett. 519, 159-163). Moreover, as shown in
The NPPase enzyme exhibits a very wide distribution among plants, so that the enzymatic product with NPPase activity can be obtained from any plant, especially from tissues of young plants such as leaves and roots. For example, the following Table 4 shows the specific activities (mU/mg protein) obtained in various monocotyledons and dicotyledons.
For the determination of glucose-nucleoside diphosphates such as ADPG, UDPG, CDP-glucose, GDP-glucose and TMP-glucose, a kit is prepared containing the following elements:
a. NPPase
b. NAD
c. Phosphoglucomutase (PGM)
d. G6P dehydrogenase (G6PDH)
e. Buffer
Determination of the quantity of glucose-nucleoside diphosphate present in the test sample is based on spectrophotometric determination of the NADH produced according to the following coupled reaction:
The quantity of NDP-glucose in a test sample could be determined by preparing a cocktail with the composition (for 1 ml):
Test sample
1 U of NPPase
1 U of PGM
1 U of G6PDH
0.6 mM NAD
Buffer Mes or Hepes 50 mM pH 7
Water (make up to 1 ml)
Incubate at 37° C. for 20 minutes and observe the change in absorbance of the sample at 340 nm. A cocktail not containing NPPase can be used as a negative control.
Kits are prepared for determination of the following nucleoside diphosphate sugars:
The kit has the following elements:
a. NPPase
b. 5′-nucleotidase (or, alternatively, alkaline phosphatase)
c. buffer
Determination of the quantity of nucleoside diphosphate sugar present in the test sample is based on colorimetric determination of the orthophosphate released according to the following coupled enzymatic reaction:
The Pi is determined according to any of the numerous colorimetric methods available in the bibliography and on the market.
The quantity of NDP-sugar in a test sample could be determined by preparing a cocktail (1 ml) consisting of:
Incubate at 37° C. for 20 minutes and determine the production of Pi released according to conventional methods. A cocktail not containing NPPase can be used as negative control.
The strategy for determination of levels of sulphonucleotides such as PAPS or APS is based on turbidimetric or nephelometric determination according to the following reaction:
The quantity of sulphonucleotide in a test sample could be determined by preparing a cocktail (1 ml) consisting of:
Incubate at 37° C. for 20 minutes and determine the production of sulphate released according to conventional methods. A cocktail not containing NPPase can be used as negative control.
Using the strain of Agrobacterium tumefaciens CECT 5799, we obtained plants of tobacco (Nicotiana tabacum), potato (Solanum tuberosum) and tomato (Lycopersicon sculentum) with high NPPase activity in all the organs analysed (root, leaf, fruit and stalk) (
Number | Date | Country | Kind |
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P200201647 | Jul 2002 | ES | national |
P200202673 | Nov 2002 | ES | national |
Filing Document | Filing Date | Country | Kind | 371c Date |
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PCT/ES03/00363 | 7/15/2003 | WO | 10/19/2005 |