Programmable drug delivery profiles of tumor-targeted bacteria

Information

  • Patent Grant
  • 10731125
  • Patent Number
    10,731,125
  • Date Filed
    Monday, June 11, 2018
    5 years ago
  • Date Issued
    Tuesday, August 4, 2020
    3 years ago
Abstract
The present invention relates to composition comprising at least one non-pathogenic bacterial cell, wherein the non-pathogenic bacterial cell comprises at least a first and a second nucleic acid sequence, the first nucleic acid sequence comprising at least one non-constitutive promoter operably linked to the second nucleic acid sequence that encodes therapeutic agent, wherein the non-constitutive promoter is an inducible promoter responsive to at least one stimuli and the at least one stimuli comprises the presence of a certain density or a certain number of bacterial cells comprising the first and second nucleic acid sequences.
Description
SUBMISSION OF SEQUENCE LISTING

The Sequence Listing associated with this application is filed in electronic format via EFS-Web and hereby incorporated by reference into the specification in its entirety. The name of the text file containing the Sequence Listing is 127299_00411_Sequence_Listing. The size of the text file is 27 KB, and the text file was created on Aug. 29, 2018.


FIELD OF THE INVENTION

This disclosure relates to compositions capable of programmed delivery of therapeutic agents to cancer cells or other cells related to a hyperproliferative disorder in a subject. This disclosure further relates to method of programming at least one bacteria comprising an inducible promoter and a nucleic acid sequence encoding a cellular toxin that modulates the delivery of a therapeutic agent or is itself a therapeutic agent. The bacteria of the invention can be genetically engineered for use in the methods or other aspects of the invention described herein.


BACKGROUND OF THE INVENTION

The engineering of bacteria to controllably deliver therapeutics is an attractive application for synthetic biology. While most synthetic gene networks have been explored within microbes, there is a need for further characterization of in vivo circuit behavior in the context of applications where the host microbes are actively being investigated for efficacy and safety, such as tumor drug delivery. One major hurdle in is that culture-based selective pressures are absent in vivo, leading to strain-dependent instability of plasmid-based networks over time. Here, we experimentally characterize the dynamics of in vivo plasmid instability using attenuated strains of S. typhimurium and real-time monitoring of luminescent reporters. Computational modeling described the effects of growth rate and dosage on live-imaging signals generated by internal bacterial populations. This understanding will allow us to harness the transient nature of plasmid-based networks to create tunable temporal release profiles that reduce dosage requirements and increase the safety of bacterial therapies.


Over the past century, the ability of bacteria to accumulate preferentially in tumors has prompted the investigation of the use of a number of strains for cancer therapy, including C. novyi, E. coli, V. cholorae, B. longum, and S. typhimurium ([3], [12], [2], [24], [15], [21]). Attenuated strains of S. typhimurium have generated particular interest as they can innately home in on tumors and colonize a variety of sizes, and have exhibited safety and tolerance in human clinical trials ([22], [5], [19], [8]]). S. typhimurium were initially shown to have anti-tumor effects through recruitment of the host immune system and competition with cancer cells for nutrients. Subsequently, engineered production of therapeutic cargo was added through simple genetic modifications. While these studies represent important advances in the use of bacteria for tumor therapies, the majority have relied on constitutive, “always on” cargo production ([9], [23], [14], [6]) that typically results in high dosages, off-target effects, and development of host resistance.


As a next step, synthetic biology seeks to add controlled and dynamic production of cargo by utilizing computationally-designed “circuits” that have sophisticated sensing and delivery capability ([7], [4], [17]s[1]). These circuits can be designed to act as delivery systems that sense tumor-specific stimuli and self-regulate cargo production as accessory. Since plasmids are the common framework for synthetic circuits, we begin by characterizing the dynamics of plasmid-based gene expression in vivo by utilizing real-time luminescence imaging, quantitative biodistribution measurement, and computational modeling. Together, these approaches provide a framework for exploiting the inherent instability of plasmid-based networks, which will facilitate the generation of specific temporal release profiles directly within the tumor environment.


SUMMARY OF THE INVENTION

The invention relates to a method of delivering a therapeutic agent to a cancer cell by administering at least one bacterial cell to a subject, the bacterial cell comprising a therapeutic agent operably linked to at least one transcriptional element or promoter, wherein the transcriptional element modulates the expression or secretion of the therapeutic agent in response to the presence of a density or quantity of bacteria comprising the at least one transcriptional element or promoter. In some embodiments, the transcriptional element or promoter is non-constitutive.


The invention relates to a composition comprising at least one non-pathogenic bacterial cell, wherein the non-pathogenic bacterial cell comprises at least a first and a second nucleic acid sequence, the first nucleic acid sequence comprising at least one non-constitutive promoter operably linked to the second nucleic acid sequence, the second nucleic acid encoding at least one therapeutic agent, wherein the non-constitutive promoter is an inducible promoter responsive to at least one stimuli and the at least one stimuli comprises the presence of a certain density or a certain number of bacterial cells comprising the first and second nucleic acid sequences.


In some embodiments, the composition comprises at least one bacterial cell, wherein the at least one non-pathogenic bacterial cell is chosen from one or a combination of bacterial cells of the genera chosen from: Salmonella, Escherichia, Firmicutes, Bacteroidetes, Lactobacillus, Bifidobacteria, or Acidopholus.


In some embodiments, the composition disclosed herein, wherein the bacterial cell comprises no more than five exogenous nucleic acid sequences that are coding sequences, wherein the first exogenous nucleic acid sequence comprises at least one non-constitutive promoter operably linked to the second exogenous nucleic acid sequence that encodes the at least one therapeutic agent.


In some embodiments, the invention relates to a composition comprising at least one bacterial cell, wherein the bacterial cell comprises a first, a second, and a third exogenous nucleic acid sequence, wherein the first exogenous nucleic acid sequence comprises at least one inducible promoter, the second exogenous nucleic acid sequence encodes at least one therapeutic agent, and the third exogenous nucleic acid sequence encodes at least one amino acid sequence that directs targeting of the at least one therapeutic to a cancer cell or a cell associated with a hyperprolierative disorder. In some embodiments the promoter is operably linked to the nucleic acid sequence encoding a therapeutic agent and/or to the nucleic acid sequence encoding an amino acid that directs targeting of the at least one therapeutic agent to a cancer cell or a cell associated with a hyperprolierative disorder.


In some embodiments, the invention relates to a composition comprising at least one bacterial cell, wherein the bacterial cell comprises a first, a second, and a third exogenous nucleic acid sequence, wherein the first exogenous nucleic acid sequence comprises an inducible promoter, the second exogenous nucleic acid sequence encodes a therapeutic agent, and the third exogenous nucleic acid sequence encodes an amino acid sequence that directs targeting of the at least one therapeutic to the a cancer cell or a cell associated with a hyperproliferative disorder, and wherein the first, second, and third nucleic acid sequences reside on a single DNA plasmid.


In some embodiments, the invention relates to a composition comprising at least one bacterial cell, wherein the at least one bacterial cell comprises either: (a) a first, a second, and a third exogenous nucleic acid sequence, wherein the first exogenous nucleic acid sequence comprises an inducible promoter, the second exogenous nucleic acid sequence encodes a therapeutic agent, and the third exogenous nucleic acid sequence encodes an amino acid sequence that directs targeting of the at least one therapeutic to the a cancer cell or a cell associated with a hyperproliferative disorder, and wherein the first, second, and third nucleic acid sequences reside on at least one DNA plasmid; or (b) a first and a second exogenous nucleic acid sequence, wherein the first exogenous nucleic acid sequence comprises an inducible promoter, and the second exogenous nucleic acid sequence encodes a therapeutic agent, and the third exogenous nucleic acid sequence encodes an amino acid sequence that directs targeting of the at least one therapeutic to the a cancer cell or a cell associated with a hyperproliferative disorder, and wherein the first and second exogenous nucleic acid sequences reside on at least one DNA plasmid.


In some embodiments, the composition comprises at least one bacterial cell comprising a nucleic acid sequence that is an inducible and non-constitutive promoter, wherein the promoter is responsive to a single stimulus, wherein the stimulus comprises the presence of a certain density or a certain number of bacterial cells comprising the first and second exogenous nucleic acid sequences. In some embodiments, the composition disclosed herein, the at least one stimuli are generated naturally by a microenvironment or tissue of a subject. In some embodiments, the microenvironment or tissue of the subject is a solid tumor in the subject.


In some embodiments, the composition disclosed herein, wherein the at least one stimuli comprise the presence of a bio film of bacteria.


In some embodiments, the composition comprises at least one bacterial cell comprising a nucleic acid sequence that encodes a therapeutic agent, wherein the therapeutic agent is a fusion protein encoded by the second nucleic acid sequence, the fusion protein comprising at least a first and second moiety, wherein the first moiety is a cellular toxin and the second moiety is a targeting sequence, the composition comprises at least one bacterial cell comprising a nucleic acid sequence that encodes a therapeutic agent, wherein the therapeutic agent is a fusion protein encoded by the second nucleic acid sequence, the fusion protein comprising at least a first and second moiety, wherein the first moiety is at least 70% homologous to SEQ ID NO:6 and the second moiety is at least 70% homologous to SEQ ID NO:5.


In some embodiments, the composition comprises at least one bacterial cell comprising a plasmid at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homologous to SEQ ID NO:1. In some embodiments, the composition comprises at least one bacterial cell comprising a plasmid at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homologous to SEQ ID NO:7. In some embodiments, a single plasmid encodes all of the exogenous nucleic acid sequences. In some embodiments, the at least one bacterial cells comprises or consists of SEQ ID NO:1 or SEQ ID NO:7.


In some embodiments, the composition comprises at least one bacterial cell comprising one or more exogenous nucleic acid sequences wherein at least one of the exogenous nucleic acid sequences is a coding sequence, and wherein each one or more exogenous nucleic acid sequences reside on a single plasmid.


In some embodiments, the composition comprises at least one bacterial cell comprising one or more exogenous nucleic acid sequences wherein each one or more exogenous nucleic acid sequences reside on a single plasmid consisting of or consisting essentially of SEQ ID NO:1.


In some embodiments, the invention relates to a composition comprising at least one bacteria cell disclosed herein, wherein the at least bacterial cell comprises at least two lux genes operably linked to one or more therapeutic agents. In some embodiments, the one or more therapeutic agents are one or more cellular toxins. In some embodiments, the composition comprises at least one bacterial cell, wherein the at least bacterial cell comprises at least two lux genes and one or more cellular toxins that is are least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homologous to SEQ TD NO:6. In some embodiments, the cellular toxin is an amino acid encoded by a nucleic acid sequence at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homologous to SEQ ID NO:6 optionally fused to an amino acid encoded by a nucleic acid sequence at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homologous to SEQ ID NO:5. In some embodiments, the therapeutic agent is linked by a linker amino acid sequence at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homologous to SEQ ID NO:4.


In some embodiments, the invention relates to a composition comprising at least one bacterial cell disclosed herein, wherein the at least bacterial cell further comprises: (a) at least one exogenous nucleic acid sequence that encodes a marker amino acid sequence, and wherein the at least one exogenous nucleic acid sequences that encode a marker amino acid are optionally operably linked to the inducible promoter; or (b) at least one selectable marker.


In some embodiments, the invention relates to a pharmaceutical composition comprising: (a) the composition comprising any of the compositions disclosed herein, and (b) a pharmaceutically acceptable carrier or a pharmaceutically acceptable salt thereof. In some embodiments, the pharmaceutical composition disclosed herein, further comprises: (c) a chemotherapeutic compound.


In some embodiments, the invention relates to a pharmaceutical composition disclosed herein, wherein the pharmaceutical composition comprises one more radioactive isotopes, optionally incorporated into the at least bacterial cell. In some embodiments, the pharmaceutical composition comprises a therapeutically effective dose of the at least one bacterial cell. As used herein the terms “therapeutically effective dose” means the number of cells per dose administered to a subject in need thereof sufficient in number to ameliorate or reduce the burden of disease symptoms of the subject. In some embodiments, the terms “therapeutically effective dose” means the number of cells per dose administered to a subject in need thereof sufficient in number to reduce the rate of growth of a tumor or cancer cell or cell associated with a hyperproliferative disease, reduce the size of a tumor, or prevent the metastases of a tumor. In some embodiments, the pharmaceutical composition disclosed herein, wherein the therapeutically effective dose is from about 1×104 to about 1×107 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×101 to about 1×107 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×102 to about 1×107 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×103 to about 1×107 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×104 to about 1×107 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×105 to about 1×107 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×106 to about 1×107 bacterial cells.


In some embodiments, the therapeutically effective dose is from about 1×101 to about 1×106 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×102 to about 1×106 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×103 to about 1×106 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×104 to about 1×106 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×105 to about 1×106 bacterial cells.


In some embodiments, the therapeutically effective dose is from about 1×101 to about 1×105 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×102 to about 1×105 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×103 to about 1×105 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×104 to about 1×105 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×101 to about 1×104 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×102 to about 1×104 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×101 to about 1×103 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×103 to about 1×104 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×102 to about 1×103 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×101 to about 1×102 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×10° to about 1×102 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×10° to about 1×108 bacterial cells. In some embodiments, the therapeutically effective dose is from about 1×10° to about 1×109 bacterial cells. In some embodiments, the therapeutically effective dose of bacterial cells is more than 1×109 bacterial cells. In some embodiments, the therapeutically effective dose of bacterial cells is less than 10 cells.


In some embodiments, a food product comprising the composition comprising at least one non-pathogenic bacterial cell, wherein the non-pathogenic bacterial cell comprises at least a first and a second nucleic acid sequence, the first nucleic acid sequence comprising at least one non-constitutive promoter operably linked to the second nucleic acid sequence, the second nucleic acid encoding at least one therapeutic agent, wherein the non-constitutive promoter is an inducible promoter responsive to at least one stimuli and the at least one stimuli comprises the presence of a certain density or a certain number of bacterial cells comprising the first and second nucleic acid sequences. In some embodiments, the food product further comprises a natural or non-natural food additive.


The invention also relates to a kit comprising the composition disclosed herein, or the pharmaceutical composition disclosed herein, or the food product disclosed herein. In some embodiments, the kit disclosed herein, further comprises a bacterial culture vessel. In some embodiments, the kit disclosed herein, further comprises a bacterial cell growth media.


In some embodiments, the at least one bacterial cell comprises at least a first and a second nucleic acid sequence, the first nucleic acid sequence comprising at least one non-constitutive promoter operably linked to the second nucleic acid sequence, the second nucleic acid encoding at least one therapeutic agent, wherein the non-constitutive promoter is an inducible promoter responsive to at least one stimuli and the at least one stimuli comprises the presence of a certain density or a certain number of bacterial cells comprising the first and second nucleic acid sequences. In some embodiments, the at least one bacterial cell comprises a selectable marker or marker amino acid sequence. In some embodiments, the at least one bacterial cell comprises a marker amino acid sequence that is a luciferase gene or a functional fragment thereof.


In some embodiments, the at least one bacterial cell disclosed herein, wherein the at least one bacterial cell is a non-pathogenic bacterial cell. In some embodiments, the at least one bacterial cell disclosed herein, further comprising: (a) at least a third exogenous nucleic acid sequence that encodes at least one marker amino acid sequence; and (b) at least one selectable marker.


In some embodiments, the at least one bacterial cell comprises is a strain of bacteria chosen from Salmonella, Escherichia, Firmicutes, Bacteroidetes, Lactobacillus, Bifidobacteria, or Acidopholus. In some embodiments, the at least one bacterial cell disclosed herein, wherein the at least one cell is a strain of Salmonella typhimurium. In some embodiments, the at least one bacterium is a non-pathogenic bacterium. In some embodiments, the bacterium is attenuated or rendered non-pathogenic by mutating one or more virulence factors. In some embodiments, the at least one bacterium is chosen from any species listed on Table 1. In some embodiments, the at least one bacterium is chosen from any species listed on Table 1 and the strain is mutated to attenuate one or more virulence factors. In some embodiments, the non-pathogenic bacterium is a pro-biotic bacterium.


In some embodiments, the invention relates to a method of treating or preventing cancer comprising administering to a subject in need thereof the a composition comprising at least one non-pathogenic bacterial cell, wherein the non-pathogenic bacterial cell comprises at least a first and a second nucleic acid sequence, the first nucleic acid sequence comprising at least one inducible and/or non-constitutive promoter operably linked to the second nucleic acid sequence, the second nucleic acid encoding at least one therapeutic agent, wherein the at least one inducible and/or non-constitutive promoter is responsive to at least one stimuli and the at least one stimuli comprises the presence of a certain density or a certain number of bacterial cells comprising the first and second nucleic acid sequences. In some embodiments, the method further comprises a step of administering one or more stimuli external to the subject in order to induce expression of the at least one therapeutic agent in the subject. In some embodiments, the method does not comprise administering any stimuli external to the body of the subject in order to induce expression of the at least one therapeutic agent in the subject. In some embodiments, the method further comprises a step of measuring the presence, absence or quantity of therapeutic agent in the subject one or more times subsequent to administration of the composition disclosed herein, or the pharmaceutical composition disclosed herein, or the food product disclosed herein. In some embodiments, the compositions, pharmaceutical compositions or food products are delivered to a subject in need thereof per os, per anus, per muscosal lavage, via intravenous injection, subcutaneous injection, via any form of injection.


In some embodiments, the invention relates to a method of reducing the growth of a cancer cell, solid tumor, or cell associated with a hyperproliferative disorder comprising administering to a subject in need thereof the composition disclosed herein, or the pharmaceutical composition disclosed herein, or the food product disclosed in paragraph herein. In some embodiments, the method further comprises a step of administering one or more stimuli external to the subject in order to induce expression of the at least one therapeutic agent in the subject.


In some embodiments, the invention relates to a method disclosed herein, wherein the method does not comprise administering any stimuli external to the body of the subject in order to induce expression of the at least one therapeutic agent in the subject. In some embodiments, the invention relates to a method disclosed herein, wherein the method further comprises a step of measuring the presence, absence or quantity of therapeutic agent in the subject one or more times subsequent to administration of the composition disclosed herein, or the pharmaceutical composition disclosed herein, or the food product disclosed herein.


In some embodiments, the invention relates to a method of delivering one or more therapeutic agents to a tumor in a subject comprising administering the composition comprising at least one non-pathogenic bacterial cell, wherein the non-pathogenic bacterial cell comprises at least a first and a second nucleic acid sequence, the first nucleic acid sequence comprising at least one non-constitutive promoter operably linked to the second nucleic acid sequence, the second nucleic acid encoding at least one therapeutic agent, wherein the non-constitutive promoter is an inducible promoter responsive to at least one stimuli and the at least one stimuli comprises the presence of a certain density or a certain number of bacterial cells comprising the first and second nucleic acid sequences; or the pharmaceutical composition disclosed herein, or the food product disclosed herein to the subject in need thereof. In some embodiments, the only stimulus for inducing expression of the therapeutic agent is the density or quantity of bacteria in a given microenvironment where the at least one bacterial cell colonizes. In some embodiments, the microenvironment is chosen from at or around a cancer cell, a cell associated with a hyperproliferative disorder, a solid tumor, or a metastatic tumor, or a grafted tumor.


In some embodiments, the invention relates to a method disclosed herein, wherein the method further comprises a step of administering one or more stimuli external to the subject in order to induce expression of the at least one therapeutic agent in the subject. In some embodiments, the invention relates to a method disclosed herein, wherein the method does not comprise administering any stimuli external to the body of the subject in order to induce expression of the at least one therapeutic agent in the subject. In some embodiments, the invention relates to a method disclosed herein, wherein the method docs not comprise administering any light to the body of the subject in order to induce expression of the at least one therapeutic agent in the subject. In some embodiments, the invention relates to a method disclosed herein, wherein the method does not comprise administering any chemical agent to the body of the subject in order to induce expression of the at least one therapeutic agent in the subject prior to, simultaneously with, or subsequent to administration of the at least one bacterial cell.


In some embodiments, the invention relates to any of the methods disclosed herein, wherein the method comprises a step of measuring the presence, absence or quantity of therapeutic agent in the subject in need thereof one or more times subsequent to administration of the composition disclosed in herein, or the pharmaceutical composition disclosed herein, or the food product disclosed herein.


The invention also relates to a method of reducing tolerance to a therapeutic agent in a subject in need thereof comprising administering the composition disclosed in herein, or the pharmaceutical composition disclosed herein, or the food product disclosed herein to the subject in need thereof. In some embodiments, the method of reducing tolerance to a therapeutic agent further comprises a step of administering one or more stimuli external to the subject in order to induce expression of the at least one therapeutic agent in the subject.


In some embodiments, the method of reducing tolerance to a therapeutic agent does not comprise administering any stimuli external to the body of the subject in order to induce expression of the at least one therapeutic agent in the subject.


In some embodiments, the invention also relates to a method of manufacturing the composition disclosed herein, or the pharmaceutical composition disclosed herein, or the food product disclosed herein comprising transforming at least one of nucleic acid comprising at least one inducible and/or non-constitutive promoter into at least one or a combination of bacterial cells. In some embodiments, the method of manufacturing the compositions and food products herein further comprises culturing any of the at least one or a combination of bacterial cells in a tissue culture vessel.


The invention also relates to a pharmaceutical composition comprising the at least one bacterial cell disclosed herein for treatment or prevention of cancer, growth of cells associated with a hyperproliferative disorder, or metastases.


The invention also relates to a pharmaceutical composition comprising the at least one bacterial cell disclosed herein manufactured in a medicament for cancer, growth of cells associated with a hyperproliferative disorder, or metastases.


Embodiments include methods of using tumor-targeted bacteria to identify a therapeutically effective dose of therapeutic agent in a solid tumor, the method comprising administering any of the compositions, pharmaceutical compositions, or food products disclosed herein to a subject in need thereof, in some embodiments, the subject is suspected of having or has been diagnosed with cancer or metastatic cancer.





BRIEF DESCRIPTION OF THE DRAWINGS


FIG. 1A depicts Plasmid map of the pTD106CDD-iRGD vector. The vector consists of a quorum sensing promoter driving both a luciferase expression cassette (luxCDABE) and a therapeutic (CDD-iRGD). The additional iRGD attached to the CDD gives a stronger internalization of the therapeutic into cells.



FIG. 1B depicts plasmid pB33eCPX-NC-IRGD.



FIGS. 2A, 2B, 2C and 2D depict a schematic of an embodiment. (FIG. 2A) Schematic showing programmed bacteria being introduced systemically via tail-vein injection in a mouse model. (FIG. 2B) Variable dosage of bacteria yield different peak onset times of therapeutic agent expression. (FIG. 2C, FIG. 2D) The bacterial cells at different dosages produce dynamioc and temporal expression profiles in vivo.



FIGS. 3A, 3B, 3C and 3D depict the population dynamics of bacteria inside tumor environments. (FIG. 3A) Schematic showing tumor extraction, homogenization and plating to count internal populations of bacteria. Plating on antibiotics reveals the number of plasmid-containing bacteria while plating without antibiotics gives the total number of bacteria. (FIG. 3B) Measured number of positive and negative containing bacteria per organ calculated for plasmid containing bacteria (light grey) and non-plasmid containing bacteria (dark grey). Bacteria with the plasmid reach a steady state around 24 hours while the non-plasmid bacteria continue to grow. (FIG. 3C) Percentage of cells containing the plasmid as a function of time showing a constant loss rate over the course of 72 hours. (FIG. 3D) Ratio for total number of bacteria in the tumor vs. the spleen. This number is typically reported as a measure of specificity of the tumor-targeting strain.



FIGS. 4A, 4B and 4C depict Characterization of Strain A and Strain B in vivo expression profiles. (FIG. 4A and FIG. 4B) Time-course trajectories for Strain A (FIG. 4A) and Strain B (FIG. 4B) over the course of 60 hours normalized to their maximum value across the trajectory. Light grey lines indicate individual trajectories and the solid black line indicates the average trajectories. (FIG. 4C, Left Panel) Full-width at half-maximum and the area (FIG. 4C, Right Panel) under the curve for the average trajectory of both strains. These parameters characterize the dosage and duration of transient gene-expression.



FIGS. 5A, 5B, 5C, 5D, 5E, 5F, 5G, 5H, 5I, 5J and 5K depict computational modeling of bacterial dynamics inside of tumor environments. (FIG. 5A) Schematic of mathematical model. Bacteria containing plasmids are injected at a dosage N0. Plasmids are lost from cells at a rate x and growth of resulting plasmid containing and non-containing cells continues at μ+ and μ−, respectively. (FIG. 5B) Modeling results (solid lines) for the number of plasmid containing (dark grey) and non-plasmid containing (light grey) bacterial population data from FIG. 3B. Open circles indicate experimental points. (FIG. 5C) Typical rime course of an IVIS trajectory indicating parameters co and area for characterizing transient gene expression. The relative IVIS trajectory is typically measured experimentally due to mouse-to-mouse variability while the absolute IVIS trajectories are used to calculate co and area. (FIG. 5D, FIG. 5E, FIG. 5F, FIG. 5G) The effect of growth rate on transient gene expression. Decreasing growth rate shifts the absolute IVIS signals to a lower value and longer peak times and therefore increasing co and decreasing the area under the curve. (FIG. 5H, FIG. 5I, FIG. 5J, FIG. 5K) The effect of initial dosage on transient gene expression. Increasing the dosage shifts the absolute IVIS signals to a higher level, increasing the area under the curve, but does not change the relative IVIS trajectory shape or co value.



FIG. 6 depicts quorum sensing bacteria injected intravenously into nude mice bearing OVCAR-8 xenograft hind flank tumors.



FIG. 7 depicts IVIS imaging of mice bearing subcutaneous ovarian cancer cell lines that have been injected with 1×106 bacteria.



FIG. 8 depicts signal intensity from therapeutic effect of quorum sensing circuit.



FIG. 9A, left panel, depicts a plot of a substrate concentration as a function of time. FIG. 9A, right panel, depicts a plot of saturating functions of the model. The dark grey line depicts the consumption of tumor substrate as a function of time. The light grey depicts the growth rate of plasmid-containing cells as a function of time.



FIG. 9B depicts correlations between in vivo and ex vivo imaging of tumors. High correlations are observed for each step of the process.



FIG. 9C depicts the effect of increasing tau (τ) on gene expression dynamics.





DETAILED DESCRIPTION OF THE INVENTION

Some embodiments relate to bacteria which comprise heterologous nucleic acid sequences. The bacteria colonize tumors. In some embodiments, the non-pathogenic bacteria are non-pathogenic bacteria that colonize tumor cells or cancer cells, or cell associated with a hyperproliferative disorder, and, at a certain concentration or cell density, the bacteria secrete, release, or enhance the activation of a therapeutic agent. In some embodiments, the bacteria that comprise heterologous nucleic acid sequences comprise at least one inducible promoter or non-constitutive promoter. Some embodiments provide compositions comprising at least one bacterial cell disclosed herein.


In some embodiments, the compositions are pharmaceutical compositions that comprise at least one bacterial cell disclosed herein and at least one pharmaceutically acceptable carrier. Some embodiments provide pharmaceutical compositions of the claimed invention that are useful to treat and/or prevent cancer. Some embodiments are useful to treat or prevent metastases. Some embodiments are useful to treat or prevent tumor growth.


Some embodiments provide compositions comprising at least one bacterial cell that comprises one or more exogenous plasmids, wherein at least one plasmid comprises a heterologous nucleic acid sequence that encodes a therapeutic agent operably linked to an non-constitutive and/or inducible promoter; such non-constitutive and/or inducible promoter modulates the expression of the nucleic acid encoding the therapeutic agent in the presence of at least one stimulus. In some embodiments, the inducible and non-constitutive promoter only induces the expression of the nucleic acid encoding the therapeutic agent in the presence of a certain density or number of bacterial cells comprising the inducible promoter and/or the nucleic acid that encodes the therapeutic agent. When such a bacterial cell reproduces in vivo, such as when the bacterial cell colonizes a tumor in an animal, the clonally derived progeny of the at least one bacterial cells may reach a certain density or number that such density or number triggers the expression of the therapeutic agent. The ability of a bacterial cell to modulate expression of a gene in the presence of a certain number or density of cells is quorum sensing. In some embodiments, the non-constitutive or inducible promoter has only a single stimulus that is a certain number or density of cells. In some embodiments, the non-constitutive and/or inducible promoter responds to at least one, two, three, four, five or more stimuli but none of the stimuli require administration or exposure of the stimulus or stimuli external to the subject. In some embodiments, the stimulus or stimuli necessary to induce expression of the nucleic acid encoding the therapeutic agent require exposure to or administration of a cofactor before, simultaneously to, or after administration of the at least one bacterial cell.


In some embodiments, the at least one bacterial cell optionally comprises a nucleic acid sequence that encodes a polarization protein or functional fragment thereof and/or a nucleic acid sequence that encodes a combination of a toxin and an antidote. When such microorganism reproduces in vivo, such as when they are colonizing a tumor in an animal, a greater proportion of the resulting progeny remain plasmid-bearing compared to the proportion of resulting progeny from bacteria which do not comprise a nucleic acid sequence that encodes a polarization protein, or functional fragment thereof and/or a nucleic acid sequence that encode a combination of a toxin and an antidote. The polarization protein, or optionally, the combination of the polarization protein and a toxin and an antidote, reduces plasmid loss that occurs during cell division and facilitates the inclusion of both the plasmids in the at least one bacterial cell and its progeny upon cellular division. This feature of improves therapeutics that use bacteria that target and colonize tumors and release therapeutics or products involved in tumor detection. In some embodiments, the bacteria further comprise a nucleic acid sequence that encodes a protein used in therapeutic methods that cause slowed or inhibit tumor growth or reduce or eliminate tumors.


Specific preferred embodiments of the present invention have been described here in sufficient detail to enable those skilled in the art to practice the full scope of invention. However it is to be understood that many possible variations of the present invention, which have not been specifically described, still fall within the scope of the present invention and the appended claims. Hence these descriptions given herein are added only by way of example and are not intended to limit, in any way, the scope of this invention. More generally, those skilled in the art will readily appreciate that all parameters, dimensions, materials, and configurations described herein are meant to be exemplary and that the actual parameters, dimensions, materials, and/or configurations will depend upon the specific application or applications for which the teachings of the present invention is/are used. Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. It is, therefore, to be understood that the foregoing embodiments are presented by way of example only and that, within the scope of the appended claims and equivalents thereto, the invention may be practiced otherwise than as specifically described and claimed. The present invention is directed to each individual feature, system, article, material, kit, and/or method ‘described herein. In addition, any combination of two or more such features, systems, articles, materials, kits, and/or methods, if such features, systems, articles, materials, kits, and/or methods are not mutually inconsistent, is included within the scope of the present invention.


Various terms relating to the methods and other aspects of the present invention are used throughout the specification and claims. Such terms are to be given their ordinary meaning in the art unless otherwise indicated. Other specifically defined terms are to be construed in a manner consistent with the definition provided herein.


The term “about” as used herein when referring to a measurable value such as an amount, a temporal duration, and the like, is meant to encompass variations of ±20%, ±10%, ±5%, ±1%, or ±0.1% from the specified value, as such variations are appropriate to perform the disclosed methods.


The indefinite articles “a” and “an,” as used herein in the specification and in the claims, unless clearly indicated to the contrary, should be understood to mean “at least one.” The phrase “and/or,” as used herein in the specification and in the claims, should be understood to mean “either or both” of the elements so conjoined, i.e., elements that are conjunctively present in some cases and disjunctively present in other cases. Other elements may optionally be present other than the elements specifically identified by the “and/or” clause, whether related or unrelated to those elements specifically identified unless clearly indicated to the contrary. Thus, as a non-limiting example, a reference to “A and/or B,” when used in conjunction with open-ended language such as “comprising” can refer, in one embodiment, to A without B (optionally including elements other than B); in another embodiment, to B without A (optionally including elements other than A); in yet another embodiment, to both A and B (optionally including other elements); etc.


As used herein in the specification and in the claims, “or” should be understood to have the same meaning as “and/or” as defined above. For example, when separating items in a list, “or” or “and/or” shall be interpreted as being inclusive, i.e., the inclusion of at least one, but also including more than one, of a number or list of elements, and, optionally, additional unlisted items. Only terms clearly indicated to the contrary, such as “only one of or “exactly one of,” or, when used in the claims, “consisting of,” will refer to the inclusion of exactly one element of a number or list of elements. In general, the term “or” as used herein shall only be interpreted as indicating exclusive alternatives (i.e. “one or the other but not both”) when preceded by terms of exclusivity, such as “either,” “one of,” “only one of,” or “exactly one of “Consisting essentially of,” when used in the claims, shall have its ordinary meaning as used in the field of patent law.


In the claims, as well as in the specification above, all transitional phrases such as “comprising,” “including,” “carrying,” “having,” “containing,” “involving,” “holding,” and the like are to be understood to be open-ended, i.e., to mean including but not limited to. Only the transitional phrases “consisting of and “consisting essentially of shall be closed or semi-closed transitional phrases, respectively.


The terms “amino acid” refer to a molecule containing both an amino group and a carboxyl group bound to a carbon which is designated the a-carbon. Suitable amino acids include, without limitation, both the D- and L-isomers of the naturally-occurring amino acids, as well as non-naturally occurring amino acids prepared by organic synthesis or other metabolic routes. In some embodiments, a single “amino acid” might have multiple sidechain moieties, as available per an extended aliphatic or aromatic backbone scaffold. Unless the context specifically indicates otherwise, the term amino acid, as used herein, is intended to include amino acid analogs including non-natural analogs.


The terms “exogenous gene” means a nucleic acid that has been recombinantly introduced into a cell, which encodes the synthesis of RNA and/or protein. In some embodiments, the exogenous gene is introduced by transformation. In some embodiments, the exogenous gene is introduced into the cell by electroporation. A transformed cell may be referred to as a recombinant cell, into which additional exogenous gene(s) may be introduced. The exogenous gene put into the host species may be taken from a different species (this is called heterologous), or it may naturally occur within the same species (this is homologous as defined below). Therefore, exogenous genes subsume homologous genes that are integrated within or introduced to regions of the genome, episome, or plasmid that differ from the locations where the gene naturally occurs. Multiple copies of the exogenous gene may be introduced into the cell. An exogenous gene may be present in more than one copy within the host cell or transformed cell. In some embodiments, the microorganism comprises between and including 1 and 10,000 copies of the nucleic acid that encodes an exogenous protein. In some embodiments, the microorganism comprises between and including 1 and 1,000 copies of the nucleic acid that encodes an exogenous protein. In some embodiments, the microorganism comprises between and including 1 and 10,000 copies of the nucleic acid that encodes an exogenous protein. In some embodiments, the microorganism comprises between and including 1 and 1,000 copies of the nucleic acid that encodes an exogenous protein. In some embodiments, the microorganism comprises between and including 1 and 500 copies of the nucleic acid that encodes an exogenous protein. In some embodiments, the exogenous gene is maintained by a cell as an insertion into the genome or as an episomal molecule. In some embodiments, the microorganism comprises no more than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, or 1000 copies of the one or more nucleic acids that encode one or more exogenous proteins.


The terms “functional fragment” means any portion of a polypeptide or nucleic acid sequence from which the respective full-length polypeptide or nucleic acid relates that is of a sufficient length and has a sufficient structure to confer a biological affect that is similar or substantially similar to the full-length polypeptide or nucleic acid upon which the fragment is based. In some embodiments, a functional fragment is a portion of a full-length or wild-type nucleic acid sequence that encodes any one of the nucleic acid sequences disclosed herein, and said portion encodes a polypeptide of a certain length and/or structure that is less than full-length but encodes a domain that still biologically functional as compared to the full-length or wild-type protein. In some embodiments, the functional fragment may have a reduced biological activity, about equivalent biological activity, or an enhanced biological activity as compared to the wild-type or full-length polypeptide sequence upon which the fragment is based. In some embodiments, the functional fragment is derived from the sequence of an organism, such as a human. In such embodiments, the functional fragment may retain 99%, 98%, 97%, 96%, 95%, 94%, 93%, 92%, 91%, or 90% sequence identity to the wild-type human sequence upon which the sequence is derived. In some embodiments, the functional fragment may retain 85%, 80%, 75%, 70%, 65%, or 60% sequence homology to the wild-type sequence upon which the sequence is derived. The present invention also comprises functional fragments of nucleotide sequences that encode a polypeptide capable of enzymatic activity, substrate activity, polarization activity, toxin activity, or antidote to toxin activity as disclosed herein in an animal. In some embodiments, the functional fragment are DNA or amino acid fragments selected from at least one of the various encoding nucleotide sequences of the present invention, including SEQ ID NO: 1, 7, 5, 6, 4, 2, or 3 and can be any of the following described DNA fragments, as it applies to the specific encoding nucleic acid sequence provided herein. In some embodiments, DNA fragments can comprise 30 or more, 45 or more, 60 or more, 75 or more, 90 or more, 120 or more, 150 or more, 180 or more, 210 or more, 240 or more, 270 or more, 300 or more, 360 or more, 420 or more, 480 or more, 540 or more, 600 or more, 660 or more, 720 or more, 780 or more, 840 or more, 900 or more, 960 or more, 1020 or more, 1080 or more, 1140 or more, 1200 or more, 1260 or more, 1320 or more, 1380 or more, 1440 or more, 1500 or more, 1560 or more, 1620 or more, 1680 or more, or 1740 or more, 1800 or more, 2000 or more, 2100 or more, 2200 or more, 2300 or more, 2400 or more, 2500 or more, 2600 or more, 2700 or more, 2800 or more, 2900 or more, 3000 or more, 4000 or more, 4500 or more, 5000 or more, 5500 or more, 6000 or more, 6500 or more, 7000 or more, 7500 or more, 8000 or more, 8500 or more, 9000 or more, 9500 or more, 10000 or more, 10100 or more nucleotides. In some embodiments, DNA fragments can comprise coding sequences for accessory proteins such as known ligands to tumor associated antigens expressed on the surface of tumor cells. In some embodiments, DNA fragments can comprise fewer than 60, fewer than 75, fewer than 90, fewer than 120, fewer than 150, fewer than 180, fewer than 210, fewer than 240, fewer than 270, fewer than 300, fewer than 360, fewer than 420, fewer than 480, fewer than 540, fewer than 600, fewer than 660, fewer than 720, fewer than 780, fewer than 840, fewer than 900, fewer than 960, fewer than 1020, fewer than 1080, fewer than 1140, fewer than 1200, fewer than 1260, fewer than 1320, fewer than 1380, fewer than 1440, fewer than 1500, fewer than 1560, fewer than 1620, fewer than 1680, or fewer than 1740, fewer than 1800, fewer than 1900, fewer than 2000, fewer than 2100, fewer than 2200, fewer than 2300, fewer than 2400, fewer than 2500, fewer than 2600, fewer than 2700, fewer than 2800, fewer than 2900, fewer than 3000, fewer than 4000, fewer than 5000, fewer than 6000, fewer than 7000, fewer than 8000, fewer than 9000, or fewer than 10000 nucleotides. In some embodiments, the functional fragments are nucleic acid fragments of SEQ ID NO:1 and include one or more nucleic acid derivatives. In some embodiments, the functional fragments are nucleic acid fragments of SEQ ID NO: 1, 2, 3, 7 and include more than about 5, 10, 15, 20, 25, or 30 nucleic acid derivatives.


The terms “hyperproliferative disorder” refer to a disorder characterized by abnormal proliferation, abnormal growth, abnormal senescence, abnormal quiescence, or abnormal removal of cells any or in an organism, and includes include hyperplasias, neoplasias, cancer, fibroproliferative disorders (such as involving connective tissues, as well as other disorders characterized by fibrosis, including for example, rheumatoid arthritis, insulin dependent diabetes mellitus, glomerulonephritis, cirrhosis, and scleroderma), smooth muscle proliferative disorders (such as atherosclerosis and restinosis), chronic inflammation, and epithelial cell proliferative disorders (for example, psoriasis; keratosis; acne; comedogenic lesions; verracous lesions such as verruca plana, plantar warts, verruca acuminata, and other verruciform lesions marked by proliferation of epithelial cells; folliculitis and pseudofolliculitis; keratoacanthoma; callosities; Darier's disease; ichthyosis; lichen planus; molluscous contagiosum; melasma; Fordyce disease; and keloids or hypertrophic scars). In some embodiments, the hyperproliferative disease is a cancer derived from the gastrointestinal tract or urinary system. In some embodiments, a hyperproliferative disease is a cancer of the adrenal gland, bladder, bone, bone marrow, brain, spine, breast, cervix, gall bladder, ganglia, gastrointestinal tract, stomach, colon, heart, kidney, liver, lung, muscle, ovary, pancreas, parathyroid, penis, prostate, salivary glands, skin, spleen, testis, thymus, thyroid, or uterus. In some embodiments, the term hyperproliferative disease is a cancer chosen from: lung cancer, bone cancer, CMML, pancreatic cancer, skin cancer, cancer of the head and neck, cutaneous or intraocular melanoma, uterine cancer, ovarian cancer, rectal cancer, cancer of the anal region, stomach cancer, colon cancer, breast cancer, testicular, gynecologic tumors (e.g., uterine sarcomas, carcinoma of the fallopian tubes, carcinoma of the endometrium, carcinoma of the cervix, carcinoma of the vagina or carcinoma of the vulva), Hodgkin's disease, cancer of the esophagus, cancer of the small intestine, cancer of the endocrine system (e.g., cancer of the thyroid, parathyroid or adrenal glands), sarcomas of soft tissues, cancer of the urethra, cancer of the penis, prostate cancer, chronic or acute leukemia, solid tumors of childhood, lymphocytic lymphomas, cancer of the bladder, cancer of the kidney or ureter (e.g., renal cell carcinoma, carcinoma of the renal pelvis), or neoplasms of the central nervous system (e.g., primary CNS lymphoma, spinal axis tumors, brain stem gliomas or pituitary adenomas).


As used herein, the term “genetic construct” refers to the DNA or RNA molecules that comprise a nucleotide sequence that encodes one or more of the polypeptides. In some embodiments, the genetic construct encodes one or more of the polypeptides described herein. In some embodiments, the nucleotide sequence that encodes a one or more of the polypeptides described herein, or coding sequence, includes initiation and termination signals operably linked to regulatory elements including a bacterial promoter and polyadenylation signal capable of directing expression in the cells of the bacteria in which the nucleic acid molecule is transformed.


The terms “effective amount” refers to an amount of a compound, material, or composition, as described herein effective to achieve a particular biological result such as, but not limited to, biological results disclosed, described, or exemplified herein. Such results may include, but are not limited to colonization of a tumor by administration of a composition disclosed herein, or production of an amount of a therapeutic agent, portion thereof, or a reaction product after exposure of the substrate with an enzyme such that the presence, absence or quantity of substrate, portion thereof, or a reaction product determined by any means suitable in the art. In some embodiments, the biological result is an amount of a substrate, portion thereof, or a reaction product after exposure of the substrate with an enzyme such that the presence, absence or quantity of substrate, portion thereof, or a reaction product determined by visual inspection of urine excreted by a subject administered any one or more compositions disclosed herein. The effective amount of the composition may be dependent on any number of variables, including without limitation, the species, breed, size, height, weight, age, overall health of the subject, the type of formulation, the mode or manner of administration, the type and/or severity of the particular condition being treated.


The terms “electroporation,” “electro-permeabilization,” or “electro-kinetic enhancement” (“EP”) as used interchangeably herein refer to the use of a transmembrane electric field pulse to induce microscopic pathways (pores) in a bio-membrane; their presence allows biomolecules such as plasmids, oligonucleotides, siRNA, drugs, ions, and water to pass from one side of the cellular membrane to the other.


As used herein, the term “expressible form” refers to gene constructs that contain the necessary regulatory elements operably linked to a coding sequence that encodes one or more proteins described herein, such that, when present in a transformed or transfected cell, the coding sequence will be expressed.


In some embodiments, the compositions, kits, methods comprise at least one non-pathogenic bacteria. As used herein, the term “non-pathogenic” refers to a bacteria that is not capable of causing a disease or disorder in an animal when administered to an animal, including a human. In some embodiments, the microorganism is incapable of causing a disease or disorder when administered to a mammal. In some embodiments, the microorganism is a non-pathogenic microorganism incapable of causing a disease or disorder when administered to a human or domesticated animal (such as a dog, cat, horse, sheep, cow, goat, pig, etc.). In some embodiments, the microorganism is non-pathogenic microorganism incapable of causing a disease or disorder when administered to a human. In some embodiments, the microorganism is non-pathogenic microorganism is chosen from any one of the bacterial species identified in Table 1. In some embodiments, the non-pathogenic microorganism is not at least one of species listed on Table 1. In some embodiments, the non-pathogenic microorganism is an attenuated bacterial strain. In some embodiments, the non-pathogenic microorganism is an attenuated bacterial strain listed on Table 1. In some embodiments, the non-pathogenic microorganism is an attenuated bacterial strain genetically modified to silence, remove, or mutate a virulence factor.


The term “nucleic acid” refers to a molecule comprising two or more linked nucleotides. “Nucleic acid” and “nucleic acid molecule” are used interchangeably and refer to oligoribonucleotides as well as oligodeoxyribonucleotides. The terms also include polynucleosides (i.e., a polynucleotide minus a phosphate) and any other organic base containing nucleic acid. The organic bases include adenine, uracil, guanine, thymine, cytosine and inosine. The nucleic acids may be single or double stranded. The nucleic acid may be naturally or non-naturally occurring. Nucleic acids can be obtained from natural sources, or can be synthesized using a nucleic acid synthesizer (i.e., synthetic). Isolation of nucleic acids are routinely performed in the art and suitable methods can be found in standard molecular biology textbooks. (See, for example, Maniatis' Handbook of Molecular Biology.) The nucleic acid may be DNA or RNA, such as genomic DNA, mitochondrial DNA, mRNA, cDNA, rRNA, miRNA, PNA or LNA, or a combination thereof, as described herein. Non-naturally occurring nucleic acids such as bacterial artificial chromosomes (BACs) can also be used in accordance with some aspects of this invention.


Some aspects of this invention relate to the use of nucleic acid derivatives. The use of certain nucleic acid derivatives may increase the stability of the nucleic acids of the invention by preventing their digestion, particularly when they are exposed to biological samples that may contain nucleases. As used herein, a nucleic acid derivative is a non-naturally occurring nucleic acid or a unit thereof. Nucleic acid derivatives may contain non-naturally occurring elements such as non-naturally occurring nucleotides and non-naturally occurring backbone linkages. Nucleic acid derivatives according to some aspects of this invention may contain backbone modifications such as but not limited to phosphorothioate linkages, phosphodiester modified nucleic acids, combinations of phosphodiester and phosphorothioate nucleic acid, methylphosphonate, alkylphosphonates, phosphate esters, alkylphosphonothioates, phosphoramidates, carbamates, carbonates, phosphate triesters, acetamidates, carboxymethyl esters, methylphosphorothioate, phosphorodithioate, p-ethoxy, and combinations thereof. The backbone composition of the nucleic acids may be homogeneous or heterogeneous. Nucleic acid derivatives according to some aspects of this invention may contain substitutions or modifications in the sugars and/or bases. For example, some nucleic acid derivatives may include nucleic acids having backbone sugars which are covalently attached to low molecular weight organic groups other than a hydroxyl group at the 3′ position and other than a phosphate group at the 5′ position (e.g., an 2′-O-alkylated ribose group). Nucleic acid derivatives may include non-ribose sugars such as arabinose. Nucleic acid derivatives may contain substituted purines and pyrimidines such as C-5 propyne modified bases, 5-methylcytosine, 2-aminopurine, 2-amino-6-chloropurine, 2,6-diaminopurine, hypoxanthine, 2-thiouracil and pseudoisocytosine. In some embodiments, a nucleic acid may comprise a peptide nucleic acid (PNA), a locked nucleic acid (LNA), DNA, RNA, or a co-nucleic acids of the above such as DNA-LNA co-nucleic acid.


As used herein the term “isolated nucleic acid molecule” refers to a nucleic acid that is not in its natural environment, for example a nucleic acid that has been (i) extracted and/or purified from a cell or microbe, for example, a bacteria or yeast, by methods known in the art, for example, by alkaline lysis of the host cell and subsequent purification of the nucleic acid, for example, by a silica adsorption procedure; (ii) amplified in vitro, for example, by polymerase chain reaction (PCR); (iii) recombinantly produced by cloning, for example, a nucleic acid cloned into an expression vector; (iv) fragmented and size separated, for example, by enzymatic digest in vitro or by shearing and subsequent gel separation; or (v) synthesized by, for example, chemical synthesis. In some embodiments, the term “isolated nucleic acid molecule” refers to (vi) an nucleic acid that is chemically markedly different from any naturally occurring nucleic acid. In some embodiments, an isolated nucleic acid can readily be manipulated by recombinant DNA techniques well known in the art.


Accordingly, a nucleic acid cloned into a vector, or a nucleic acid delivered to a host cell and integrated into the host genome is considered isolated but a nucleic acid in its native state in its natural host, for example, in the genome of the host, is not. An isolated nucleic acid may be substantially purified, but need not be. For example, a nucleic acid that is isolated within a cloning or expression vector is not pure in that it may comprise only a small percentage of the material in the cell in which it resides. Such a nucleic acid is isolated, however, as the term is used herein.


“Sequence homology” or “sequence identity” or “homolgous to” are used herein interchangeably for nucleotides and amino acids sequences determined using FASTA, BLAST and Gapped BLAST (Altschul et al., Nuc. Acids Res., 1997, 25, 3389, which is incorporated herein by reference in its entirety) and PAUP* 4,ObIO software (D. L. Swofford, Sinauer Associates, Massachusetts). Briefly, the BLAST algorithm, which stands for Basic Local Alignment Search Tool is suitable for determining sequence similarity (Altschul et al., J. Mol. Biol, 1990, 215, 403-410, which is incorporated herein by reference in its entirety). Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information (http://www.ncbi.nlm.nih.gov). One measure of similarity provided by the BLAST algorithm is the smallest sum probability (P(N)), which provides an indication of the probability by which a match between two nucleotide sequences would occur by chance. For example, a nucleic acid is considered similar to another if the smallest sum probability in comparison of the test nucleic acid to the other nucleic acid is less than about 1, preferably less than about 0.1, more preferably less than about 0.01, and most preferably less than about 0.001. “Percentage of similarity” or percentage of sequence identity” can be calculated using PAUP* 4,ObIO software (D. L. Swofford, Sinauer Associates, Massachusetts). The average similarity of the consensus sequence is calculated compared to all sequences in the phylogenic tree. In some embodiments, the compositions disclosed herein comprise nucleic acid sequences that are at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99% homologous to SEQ ID NO:1, SEQ ID NO: 5, SEQ ID NO: 6, and/or SEQ ID NO:7. In some embodiments, the compositions disclosed herein comprise nucleic acid or amino acid sequences that are at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99% homologous to SEQ ID NOS:1-7.


As used herein, “conservative” amino acid substitutions may be defined as set out in Tables A, B, or C below. In some embodiments, the at least one bacterial cell of the present invention comprises any of the nucleic acid sequences or amino acid sequences disclosed herein with one or more conservative amino acid or nucleic acid mutations. The mutation may include those wherein conservative substitutions have been introduced by modification of polynucleotides encoding polypeptides of the invention. Amino acids can be classified according to physical properties and contribution to secondary and tertiary protein structure. A conservative substitution is recognized in the art as a substitution of one amino acid for another amino acid that has similar properties. Exemplary conservative substitutions are set out in Table A.









TABLE A







Conservative Substitutions I










Side Chain Characteristics
Amino Acid







Aliphatic




Non-polar
G A P I L V F



Polar - uncharged
C S T M N Q



Polar - charged
D E K R



Aromatic
H F W Y



Other
N Q D E










Alternately, conservative amino acids can be grouped as described in Lehninger, (Biochemistry, Second Edition; Worth Publishers, Inc. NY, N.Y. (1975), pp. 71-77) as set forth in Table B.









TABLE B







Conservative Substitutions II










Side Chain Characteristic
Amino Acid







Non-polar (hydrophobic)




Aliphatic:
A L I V P.



Aromatic:
F W Y



Sulfur-containing:
M



Borderline:
G Y



Uncharged-polar



Hydroxyl:
S T Y



Amides:
N Q



Sulfhydryl:
C



Borderline:
G Y



Positively Charged (Basic):
K R H



Negatively Charged (Acidic):
D E










Alternately, exemplary conservative substitutions are set out in Table C.









TABLE C







Conservative Substitutions III










Original Residue
Exemplary Substitution






Ala (A)
Val Leu He Met



Arg (R)
Lys His



Asn (N)
Gin



Asp (D)
Glu



Cys (C)
Ser Thr



Gin (Q)
Asn



Glu (E)
Asp



Gly(G)
Ala Val Leu Pro



His (H)
Lys Arg



He (I)
Leu Val Met Ala Phe



Leu (L)
He Val Met Ala Phe



Lys (K)
Arg His



Met (M)
Leu He Val Ala



Phe(F)
Trp Tyr He



Pro (P)
Gly Ala Val Leu He



Ser(S)
Thr



Thr (T)
Ser



Trp(W)
Tyr Phe He



Tyr(Y)
Trp Phe Thr Ser



Val (V)
He Leu Met Ala









It should be understood that the polypeptides comprising polypeptide sequences associated with the extracellular matrix described herein are intended to include polypeptides bearing one or more insertions, deletions, or substitutions, or any combination thereof, of amino acid residues as well as modifications other than insertions, deletions, or substitutions of amino acid residues.


The term “subject” is used throughout the specification to describe an animal to whom treatment with the compositions according to the present invention is provided or administered. For treatment of those conditions which are specific for a specific subject, such as a human being or such as a mammal, the term “patient” may be interchangeably used. In some instances in the description of the present invention, the term “patient” will refer to human patients. In some embodiments, the subject may be a mammal to whom the present invention is provided or administered. In some embodiments, the subject may be a domesticated mammal to whom the present invention is provided or administered such as a horse, dog, cat, pig, cow, goat, sheep, llama, or other non-human animal. In some embodiments, the subject is non-human. In some embodiments, the subject is a mammal suspected of having a hyperproliferative disorder. In some embodiments, the subject is an animal diagnosed with cancer and suspected of having cancer.


As used herein, the term “therapeutic agent” is any chemical compound, amino acid sequence, radioisotope, or combination thereof that can be used to reduce symptom burden or correct dysfunctional components of cellular pathways responsible for disease or improve a subject's prognosis or kill a cancer cell or cells. In some embodiments, the therapeutic agent treats or prevents metastatic cancer cell growth. In some embodiments, the therapeutic agent is an amino acid sequence that kills cancer cells or cells associated with a hyperproliferative disease. In some embodiments, the therapeutic agent is an amino acid sequence that enhances the ability of another molecule present in a particular microenvironment to kill cancer cells or cells associated with a hyperproliferative disease. In some embodiments, the therapeutic agent is an amino acid sequence that contains a cellular death domain and/or is a cellular toxin. In some embodiments, the cellular toxin in CDD or an amino acid analog thereof that is 70, 85 80, 85, 90, 95, 96, 97, 98, or 99% homolgous to CDD. In some embodiments, the therapeutic agent comprises a first and second moiety wherein the first moiety comprises one or more amino acid sequences that are cellular toxins and the second moiety comprises one or more targeting sequences. A targeting sequence for purposes of this invention is an amino acid sequence that directs delivery of a therapeutic agent to a target cell or microenvironment within a cell. In some embodiments, the therapeutic agent comprises a linker that fuses the first and second moieties. In some embodiments, the targeting moiety or targeting sequence comprises an amino acid sequence 70, 85 80, 85, 90, 95, 96, 97, 98, or 99% homolgous to iRGD or like proteins. In some embodiments, the therapeutic agent can kill or enhance killing of colorectal cancer cells and/or ovarian cancer cells. In some embodiments, the at least one bacterial cell is administered sequentially, simultaneously, or subsequently to dosing with one or more of the following chemotherapeutic agents:

  • Trabectedin®
  • Belotecan®
  • Cisplatin®
  • Carboplatin®
  • Bevacizumab®
  • Pazopanib®
  • Colorectal Cancer:
  • 5-Fluorouracil
  • Capecitabine®
  • Irinotecan®
  • Oxaliplatin®


In some embodiments, pharmaceutical compositions of the present invention comprise at least one bacterial cell disclosed herein, a pharmaceutical acceptable carrier, and at least one additional therapeutic agent. Combination products are contemplated by this invention. Many therapeutic agents are known. For instance, in some embodiments, the pharmaceutical compositions of the claimed invention comprise at least one additional therapeutic agent comprising any of the agents disclosed in U.S. Pat. Nos. 8,343,498, 6,849,272, 8,257,714, 8,466,110, 7,655,444, 6,693,112, 6,428,968, and 5,633,274, each of which are incorporated herein by reference in their entireties.


As used herein, the term “promoter” means at least a first nucleic acid sequence that regulates or mediates transcription of a second nucleic acid sequence. In some embodiments, the second nucleic acid sequence encodes a cellular toxin or an amino acid sequence that enhances cellular toxicity of a microenvironment in the absence or presence of a substance being secreted by a cell. In some embodiments, the second nucleic acid sequence encodes a cellular toxin or an amino acid sequence that enhances cellular toxicity of a microenvironment in the absence or presence of a substance being secreted by a cancer cell or cell associated with a hyperproliferative disorder. For purposes of the invention, a promoter may comprise nucleic acid sequences near the start site of transcription that are required for proper function of the promoter. As an example, a TATA element for a promoter of polymerase II type. Promoters of the present invention can include distal enhancer or repressor elements that may lie in positions from about 1 to about 5,000 base pairs from the initiation site. Promoters of the present invention can include distal enhancer or repressor elements that may lie in positions from about 1 to about 10,000 base pairs or more from the initiation site. Promoters of the present invention can include distal enhancer or repressor elements that may lie in positions from about 1 to about 1,000 base pairs from the initiation site. Promoters of the present invention can include distal enhancer or repressor elements that may lie in positions from about 1 to about 500 base pairs from the initiation site. The term “inducible promoter” refers to an operable linkage between a promoter and a nucleic acid sequence, whereby the promoter mediates the nucleic acid transcription in the presence or absence of at least one specific stimulus. In some embodiments, the inducible promoter mediates transcription of a nucleic acid sequence in the presence or absence of at least one, two, three, four, or five or more stimuli. In some embodiments, the one or more stimuli are not external stimuli in reference to the body of the subject to whom the at least one bacterial cell or compositions disclosed herein are administered. In some embodiments, the one or more stimuli are natural stimuli secreted or presented by the subject to whom the disclosed compositions or at least one bacterial cells are administered. In some embodiments, the at least one stimuli do not comprise light or a chemical molecule administered to the body of a subject before, simultaneously with, or after administration of the disclosed compositions or at least one bacterial cell. In some embodiments, the at least one stimuli is not administered to the body of a subject before, simultaneously with, or after administration of the disclosed compositions or at least one bacterial cell, but is a product or molecule found in the subject of a patient. In some embodiments, the none of the stimuli are administered to the body of a subject before, simultaneously with, or after administration of the disclosed compositions or at least one bacterial cell, but rather the stimulus is a product or molecule found in the subject of a patient. In some embodiments, the only stimulus of the promoter is presence of a certain density of bacteria found in the subject of a patient. In some embodiments, the only stimulus of the promoter is presence of a certain density of bacteria found in the subject of a patient.


In some embodiments, the inducible promoter mediates transcription of a nucleic acid that enhances cellular toxicity either by encoding an amino acid that is toxic to a cell or encoding an amino acid sequence that increases the toxicity of a microenvironment in which the at least one bacterial cell colonizes and grows. In some embodiments, the inducible promoter mediates transcription of a nucleic acid that enhances cellular toxicity either by encoding an amino acid that is toxic to a cell or encoding an amino acid sequence that increases the toxicity of a microenvironment in the absence of presence of a cellular factor natively produced by the body of the subject. In some embodiments, the at least one specific stimulus is a certain density of bacteria carrying the inducible promoter in a tissue of a subject. In some embodiments, the at least one specific stimulus is the presence of absence of a cofactor. In some embodiments, the at least one specific stimulus is the presence of absence of a cofactor that is a tumor associated antigen. In some embodiments, the inducible promoter does not require any external stimulus other than the presence of a certain density of bacteria within a cofactor which can be added to the environment of the composition comprising the nucleic acid sequence that contains the inducible promoter. An “operable linkage” refers to an operative connection between nucleic acid sequences, such as for example between a control sequence (e.g. a promoter) and another nucleic acid sequence that codes for a protein i.e. a coding sequence. If a promoter can regulate transcription of an exogenous nucleic acid sequence then it is in operable linkage with the gene.


Bacterial Strains


The invention relates to bacterial cells comprising any one or more of the nucleic acid sequences of the disclosed herein. In some embodiments, the at least one bacterial cell comprises one or combination of any two or more bacterial species chosen from Table 1. In some embodiments, the bacteria are non-pathogenic. In some embodiments, the bacteria are attenuated. In some embodiments, the bacteria are attenuate and non-pathogenic. One of ordinary skill in the art would know how to attenuate pathogenic bacteria to create non-pathogenic bacteria. In some embodiments, the bacteria are attenuated by removing, knocking out, or mutating a virulence gene such as altering genetic components of the bacterial secretion system. In some embodiments, at least one bacterial cell is a Machl (E. coli strain), E. coli Nissle, E. coli DH5alpha, or S. Typhimurium (strains SL7207, ELH430, ELH1301). In other embodiments, the bacterial strain is chosen from: Bifidobacterium, Vibrio fischeri, and Bifidolongum.


In some embodiments, the invention relates to a composition comprising at least one bacterial cell that comprises a first nucleic acid sequence that encodes a therapeutic amino acid sequence or functional fragment thereof operably linked to a second nucleic acid sequence that comprise one or more inducible promoters or functional fragments thereof operably linked to the first nucleic acid sequence, wherein the inducible promoter or functional fragment thereof mediates the non-constitutive expression of the first nucleic acid sequence. In some embodiments, the invention relates to a composition comprising at least one bacterial cell that comprises a first nucleic acid sequence that encodes a therapeutic amino acid sequence or functional fragment thereof operably linked to a second nucleic acid sequence encoding one or more inducible promoters or functional fragments thereof, wherein the inducible promoter or functional fragment thereof is a non-constitutive promoter that responds only to a single stimulus. In some embodiments, the invention relates to a composition comprising at least one bacterial cell that comprises a first nucleic acid sequence that encodes a therapeutic amino acid sequence or functional fragment thereof operably linked to a second nucleic acid sequence encoding one or more inducible promoters or functional fragments thereof, wherein the inducible promoter or functional fragment thereof is a non-constitutive promoter that mediates expression of the first nucleic acid sequence only in the presence or absence of a certain density of a bacterial cells comprising the first and second nucleic acid sequences.


In some embodiments, the invention relates to a composition comprising at least one bacterial cell that comprises a first nucleic acid sequence encoding an death domain or functional fragment thereof operably linked to a second nucleic acid sequence comprising one or more inducible promoters or functional fragments thereof, wherein the inducible promoter or functional fragments thereof are non-constitutive promoter. In some embodiments, the invention relates to a composition comprising at least one bacterial cell that comprises a first nucleic acid sequence encoding an death domain or functional fragment thereof operably linked to a second nucleic acid sequence encoding one or more inducible promoters or functional fragments thereof, wherein the inducible promoter is a non-constitutive promoter and responds to the density of bacteria in a tissue.


Some embodiments of the invention further comprise third nucleic acid sequence encoding a bacterial toxin or functional fragment thereof, and a fourth nucleic acid sequence encoding an antidote to the bacterial toxin. In order to manufacture or produce such a non-pathogenic microorganism, one of ordinary skill in the art would contact the microorganism with a composition comprising each of the first, second, third, or fourth nucleic acid sequences. Methods to deliver expression vectors or expression constructs into microbes, for example, into non-pathogenic bacteria, are well known to those of skill in the art. Nucleic acids, including expression vectors, can be delivered to prokaryotic microbes by various methods well known to those of skill in the relevant biological arts. Methods for the delivery of nucleic acids to a microbe in accordance to some aspects of this invention, include, but are not limited to, different chemical, electrochemical and biological approaches, for example, heat shock transformation, electroporation, transfection, for example liposome-mediated transfection, DEAE-Dextran-mediated transfection or calcium phosphate transfection. In some embodiments, a nucleic acid construct, for example an expression construct comprising any combination of the first, second, third, and/or fourth nucleic acid sequences disclosed herein, is introduced into the host microbe using a vehicle, or vector, for transferring genetic material. Vectors for transferring genetic material to microbes are well known to those of skill in the art and include, for example, plasmids, artificial chromosomes, and viral vectors. Methods for the construction of nucleic acid constructs, including expression constructs comprising constitutive or inducible heterologous promoters, knockout and knockdown constructs, as well as methods and vectors for the delivery of a nucleic acid or nucleic acid construct to a microbe are well known to those of skill in the art, and are described, for example, in J. Sambrook and D. Russell, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press; 3rd edition (Jan. 15, 2001); David C. Amberg, Daniel J. Burke; and Jeffrey N. Strathern, Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual, Cold Spring Harbor Laboratory Press (April 2005); John N. Abelson, Melvin I. Simon, Christine Guthrie, and Gerald R. Fink, Guide to Yeast Genetics and Molecular Biology, Part A, Volume 194 (Methods in Enzymology Series, 194), Academic Press (Mar. 11, 2004); Christine Guthrie and Gerald R. Fink, Guide to Yeast Genetics and Molecular and Cell Biology, Part B, Volume 350 (Methods in Enzymology, Vol 350), Academic Press; 1st edition (Jul. 2, 2002); Gregory N. Stephanopoulos, Aristos A. Aristidou and Jens Nielsen, Metabolic Engineering: Principles and Methodologies, Academic Press; 1 edition (Oct. 16, 1998); and Christina Smolke, The Metabolic Pathway Engineering Handbook: Fundamentals, CRC Press; 1 edition (Jul. 28, 2009), all of which are incorporated by reference herein in their entireties.


Some aspects of this invention relate to cultures of genetically modified microbes provided herein. In some embodiments, the culture comprises a genetically modified microbe provided herein and a medium, for example, a liquid medium. In some embodiments, the culture comprises a genetically modified microbe provided herein and a carbon source, for example, a carbohydrate source, or an organic acid or salt thereof. In some embodiments, the culture comprises a genetically modified microbe provided herein and a salt and/or buffer establishing conditions of salinity, osmolarity, and pH, that are amenable to survival, growth, and/or catalytic activity of the encoded enzyme. In some embodiments, the culture comprises an additional component, for example, an additive. Non-limiting examples of additives are nutrients, amino acids, albumin, growth factors, enzyme inhibitors (for example protease inhibitors), fatty acids, lipids, hormones (e.g., dexamethasone and gibberellic acid), trace elements, inorganic compounds (e.g., reducing agents, such as manganese), redox-regulators (e.g., antioxidants), stabilizing agents (e.g., dimethylsulfoxide), polyethylene glycol, polyvinylpyrrolidone (PVP), gelatin, antibiotics (e.g., Brefeldin A), salts (e.g., NaCl), chelating agents (e.g., EDTA, EGTA), and enzymes (e.g., cellulase, dispase, hyaluronidase, or DNase). In some embodiments, the culture may comprise a drug inducing or inhibiting transcription from a conditional or inducible promoter, for example doxicycline, tetracycline, tamoxifen, IPTG, hormones, or metal ions. While the specific culture conditions, for example, the concentration of the carbon source, will depend upon the respective engineered microorganism to be cultured, general methods and culture conditions for the generation of microbial cultures are well known to those of skill in the art, and are described, for example, in J. Sambrook and D. Russell, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press; 3rd edition (Jan. 15, 2001); David C. Amberg, Daniel J. Burke; and Jeffrey N. Strathern, Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual, Cold Spring Harbor Laboratory Press (April 2005); John N. Abelson, Melvin I. Simon, Christine Guthrie, and Gerald R. Fink, Guide to Yeast Genetics and Molecular Biology, Part A, Volume 194 (Methods in Enzymology Series, 194), Academic Press (Mar. 11, 2004), all of which are incorporated by reference herein.


In some embodiments, the genetically modified non-pathogenic microbe or microorganism exhibits a growth advantage over wild type microbes of the same kind and/or over other microbes, for example, microbes commonly found to contaminate microbial cultures for scaling up production of cultures to large volumes. In some embodiments, the growth and/or proliferation advantage of an engineered microbe provided by aspects of this invention translates into the possibility of using non-sterile culturing and fermentation conditions for production, because the problem of culture overgrowth by contaminating microbes is mitigated or completely abolished. In some embodiments, an engineered microbe provided by aspects of this invention is cultured under non-sterile conditions. For example, in some embodiments, non-sterilized feedstock, non-sterilized culture media, non-sterilized supplements, or a non-sterilized bioreactor (e.g. an open reactor under non-sterile conditions) is used for microorganism division.


A variety of different microbes can be genetically modified according to some aspects of this invention and used for scale-up and/or isolation for eventual animal ingestion, for example, various strains of non-pathogenic E. Coli. In some embodiments, the invention provides for a composition comprising one or a combination of non-pathogenic bacteria chosen from: probiotic bacteria is chosen from Salmonella spp., Escherichia spp., Firmicutes spp., Bacteroidetes spp., Lactobacillus spp., Bifidobacteria spp., or Adalopholus spp. In some embodiments, the probiotic is selected from Lactobacillus, Bifidobacteria, and Acidopholus. In some embodiments, the bacteria is harvested from a human or animal sample and transformed as described herein, with our system. The samples may be from stool samples (probiotics) or human/mouse tumor samples (bacteria that have potential to be very tumor selective). In some embodiments, the non-pathogenic microorganism is E. coli Nissle 1917 (EcN). In some embodiments, the non-pathogenic microorganism is a strain of E. coli but not the Nissle 1917 (EcN). In some embodiments, the compositions, pharmaceutical compositions, kits or cells disclosed herein comprise at least one E. coli strain Machl. Expanding upon this we have shown the E. coli Nissle, E. coli DH5alpha, and S. Typhimurium. In some embodiments, the compositions, pharmaceutical compositions, kits or cells disclosed herein comprise at least one bacterial cell chosen from SL7207, ELH430, and ELH130 strains of S. Typhimurium. In some embodiments, the compositions, pharmaceutical compositions, kits or cells disclosed herein comprise at least one bacterial cell chosen from Salmonella spp., Escherichia spp., Firmicutes spp., Bacteroidetes spp., Lactobacillus spp., Bifidobacteria spp., or Acidopholus spp.


The present invention relates to compositions comprising any one or combination of non-pathogenic bacteria disclosed herein wherein at least one of the bacteria comprises a first, second, third, and/or fourth nucleic acid sequences disclosed herein either alone or in combination. In some embodiments, the invention relates to compositions comprising any one or combination of non-pathogenic bacteria disclosed herein wherein at least one of the bacteria comprises a nucleotide sequence encoding a mutated virulence factor. For instance, in some embodiments, the non-pathogenic microorganism comprises a mutation in its Type I, II, III, IV, V, or VI secretion system which does not allow transport of host toxins and/or host immunogenic proteins out of the cell.


In some embodiments, the invention relates to a system comprising at least one of the bacterial cells disclosed herein and bacterial growth media. In some embodiments, the invention relates to a system comprising at least one of the bacterial cells disclosed herein and a cell culture vessel or biorcactor.


In some embodiments, the invention relates to a system comprising at least one of the bacterial cells disclosed herein, bacterial growth media, and a cell culture vessel or bioreactor. fermentation processes for large-scale microbe cell division may be carried out in bioreactors, isolated and then resuspended in an amount or dosage form disclosed herein. As used herein, the terms “bioreactor” and “fermentor”, which are interchangeably used, refer to an enclosure, or partial enclosure, in which a biological and/or chemical reaction takes place, at least part of which involves a living organism or part of a living organism. A “large-scale bioreactor” or “industrial-scale bioreactor” is a bioreactor that is used to generate large volumes of non-pathogenic bacteria for large scale isolation. Large scale bioreactors typically have volumes in the range of liters, hundreds of liters, thousands of liters, or more.


Other examples of bacteria that can be modified for use in the invention include food-grade bacterial strains. In some embodiments, the non-pathogenic bacteria is chosen from the bacterials strains identified in Humaran et al., Microbial Cell Factories 2011, 10(Suppl 1):S4; Shrivastava et al., PlosOne, August 2008, Volume 3, Issue 8: e2955; and T. Danino et al., ACS Synth. Biol. 2012, 1, 465-470, each of which are incorporated by reference in their entireties.


The invention relates to compositions comprising any of the bacteria disclosed herein, wherein the compositions are in a solid or liquid dosage form an wherein the bacteria are in an amount effective to colonize a tumor. The invention relates to compositions comprising any of the bacteria disclosed herein, wherein the compositions are in a solid or liquid dosage form an wherein the bacteria are in an amount effective to colonize a tumor upon administration of the compositions or bacteria to the subject in need thereof. The invention relates to compositions comprising any of the bacteria disclosed herein, wherein the compositions are in a solid or liquid dosage form an wherein the bacteria are in an effective amount to colonize a tumor and adequate produce enzyme or substrate in quantities detectable in urine. The invention relates to compositions comprising any of the non-pathogenic bacteria disclosed herein, wherein the compositions are in a solid or liquid dosage form an wherein the bacteria are in an effective amount to colonize a tumor and adequate produce enzyme or substrate in quantities detectable in urine by visual inspection. The invention relates to compositions comprising any of the non-pathogenic bacteria disclosed herein wherein the compositions are in a solid or liquid dosage form. In addition to the compositions disclosed in either solid or liquid form, the formulations and compositions of the present invention may also contain optional ingredients to enhance the characteristics of the solid dosage form, maintain the integrity of bacteria (in dried, lyophilized, dormant or sporulated forms) during the formulation process, and/or enhance the safety of the formulation. Any additional components may be compatible with the other ingredients in the formulations of the invention, in particular the active ingredients, and may be inert. If inert, the additional component does not adversely affect the osmolarity, osmolality, or isotoncity of the formulations or interfere, to a measureable degree, with the biological function of the non-pathogenic microorganism. Additional optional ingredients that may be used in the formulations of the invention include, for example, coatings, diluents, binders, glidants, lubricants, colors, disintegrants, flavors, sweeteners, polymers or waxes.


Non-limiting examples of diluents include various types of starch, cellulose, crystalline cellulose, microcrystalline cellulose, lactose, fructose, sucrose, mannitol or other sugar alcohols, kaolin, calcium phosphate or sulfate, inorganic salts such as sodium chloride and powdered sugar. Powdered cellulose derivatives are also useful. In some embodiments of the invention, the formulation does not include a diluent.


Lubricants, for example, may be included in the formulations of the invention. Such lubricants include, but are not limited to, magnesium stearate, potassium stearate, talc, stearic acid, sodium lauryl sulphate, and paraffin. In some embodiments of the invention, the colonic purgative formulation further comprises magnesium stearate. Lubricants serve to facilitate the manufacturing of a solid dosage form. In some embodiments of the invention, the formulation does not comprise a lubricant.


Additional suitable ingredients also include, but are not limited to, carriers, such as sodium citrate and dicalcium phosphate; fillers or extenders, such as stearates, silicas, gypsum, starches, lactose, sucrose, glucose, mannitol, talc, and silicic acid; binders, such as hydroxypropyl methylcellulose, hydroxymethyl-cellulose, alginates, gelatin, polyvinyl pyrrolidone, sucrose, and acacia; humectants, such as glycerol; disintegrating agents, such as agar, calcium carbonate, potato and tapioca starch, alginic acid, certain silicates, colloidal silicon dioxide, sodium starch glycolate, crospovidone, and sodium carbonate; solution retarding agents, such as paraffin; absorption accelerators, such as quaternary ammonium compounds; wetting agents, such as cetyl alcohol and glycerol monostearate; absorbents, such as kaolin and bentonite clay; stabilizers, such as fumaric acid; coloring agents; buffering agents; dispersing agents; preservatives; organic acids; and organic bases.


In some embodiments of the instant invention, the tablet or capsules may also include inert dispersal agents which will facilitate dissolution of the a solid dosage form of the non-pathogenic bacteria in the stomach of the patient. Preferably, the dispersal agent is a pharmaceutically acceptable dispersant and is one which also produces no appreciable osmotic effects. Examples of acceptable dispersants include microcrystalline cellulose (which is also useful as a compacting agent) and anhydrous lactose. In some embodiments, the dispersal agent is AC-DI-SOL, a cross-linked starch.


In some embodiments of the present invention, the formulation or composition may also include a buffering agent to minimize any acid imbalance which may accompany ingestion of the compositions disclosed herein. Suitable buffering agents include magnesium hydroxide, aluminum hydroxide, calcium carbonate and magnesium carbonate. In some embodiments, the formulation does not include a buffering agent.


In some embodiments of the invention, an additional component in the formulations of the invention may function to maintain the electrolyte balance in a subject after ingestion of a liquid dosage form of the compositions disclosed herein. For example, formulations of the invention may further comprise calcium, phosphate, potassium, magnesium, other anions, or salts thereof.


In some embodiments, the composition comprises at least one bacterium that comprises stably transfected nucleic acid molecules. In some embodiment, the nucleic acid molecules are DNA or RNA. In some embodiments, the nucleic acid molecules are DNA plasmids.


Culture System


The invention generally relates to a culture system that comprises at least one culture vessel comprising any one or combination of bacteria or compositions disclosed herein. Microbial culturing in the present invention is performed both for the sake of implementing genetic modifications, and for scaled up production of the bacteria disclosed herein. In some embodiments, the invention relates to the method of culturing at least one bacterium disclosed herein comprising inoculating a growth medium with the at least one bacterium disclosed herein.


Microbial culturing with the aim of genetic manipulation is generally performed at a small benchtop scale and often under conditions that select for genetically modified traits. Microbial culturing aimed at the commercial production of bacteria suitable for use in a subject can be performed in bioreactors at much greater scale (e.g., 1 L, 10 L, 500 L, 1,000 L 5,000 L, 10,000 L, 50,000 L, 100,000 L bioreactor volumes and higher). In certain embodiments the bacteria of the present invention are grown in a liquid media inside a bioreactor using the methods of the invention. In some embodiments of the present invention steel fermentors 50,000 liter and greater in volume are utilized. In some embodiments of the present invention egg-shape or cylindrical digestrors 3,000,000 liters and greater in volume are utilized. In some embodiments, the bioreactor comprising the microorganism does not allow light to penetrate its interior.


The bioreactor or fermentor is used to culture cells through the various phases of their physiological cycle. A bioreactor is utilized for the cultivation of cells, which may be maintained at particular phases in their growth curve. Generally the control of growth conditions including dissolved carbon dioxide, oxygen, and other gases such as hydrogen, as well as other dissolved nutrients, trace elements, temperature and pH are facilitated in a bioreactor.


Nutrient media as well as gases can be added to the bioreactor as either a batch addition, or periodically, or in response to a detected depletion or programmed set point, or continuously over the period the culture is grown and/or maintained. For certain embodiments, the bioreactor at inoculation is filled with a starting batch of nutrient media and/or gases at the beginning of growth, and no additional nutrient media and/or gases is added after inoculation. For certain embodiments, nutrient media and/or gases are added periodically after inoculation. For certain embodiments, nutrient media and/or gas is added after inoculation in response to a detected depletion of nutrient and/or gas. For certain embodiments, nutrient media and/or gas is added continuously after inoculation.


In some embodiments, the bioreactors comprise a mechanisms to mix of the nutrient media that include but are not limited to spinning stir bars, blades, impellers, or turbines, spinning, rocking, or turning vessels, gas lifts and sparging. The culture media may be mixed continuously or intermittently.


The ports that are standard in bioreactors may be utilized to deliver, or withdraw, gases, liquids, solids, and/or slurries, into the bioreactor vessel enclosing the microbes of the present invention. Many bioreactors have multiple ports for different purposes (e.g. ports for media addition, gas addition, probes for pH and DO, sampling), and a given port may be used for various purposes during the course of a fermentation run. As an example, a port might be used to add nutrient media to the bioreactor at one point in time and at another time might be used for sampling. Preferably, the multiple use of a sampling port can be performed without introducing contamination or invasive species into the growth environment. A valve or other actuator enabling control of the sample flow or continuous sampling can be provided to a sampling port. For certain embodiments the bioreactors are equipped with at least one port suitable for culture inoculation that can additionally serve other uses including the addition of media or gas. Bioreactors ports enable control of the gas composition and flow rate into the culture environment. For example the ports can be used as gas inlets into the bioreactor through which gases are pumped. For some embodiments gases that may be pumped into a bioreactor include hydrogen gas, CO2, air, air/CO2 mixtures, ammonia, nitrogen, noble gases, such as argon, as well as other gases. Raising the gas flow rate into a bioreactor can enhance mixing of the culture and produce turbulence if the gas inlet is positioned under the surface of the liquid media such that gas bubbles or sparges up through the media. In some embodiments, a bioreactor comprises gas outlet ports for gas escape and pressure release. In some embodiments, gas inlets and outlets are preferably equipped with check valves to prevent gas backflow.


The nucleic acid sequences of the present invention may be components of one, two or more, three or more, four or more than three different plasmid molecules. Each individual nucleica acid sequence may reside on its own nucleic acid molecule or plasmid. In some embodiments, each exogenous nucleic acid resides on a single DNA plasmid. In some embodiments, the nucleic acid sequence that is an inducible promoter comprises at least one, two, three, four or more exogenous nucleic acid sequences whose presence individually or in combination control the expression of one or more coding sequences. In some embodiments, the coding sequence is a therapeutic agent, cell death amino acid sequence, cancer cell targeting sequence (e.g. ligand of a tumor associated antigen), or a selectable marker or marker amino acid sequence. Example of marker amino acid sequences comprise amino acid sequences that, upon exposure to a light, emit a detectable wavelength of light. One of ordinary skill in the art can measure the emission of light from the marker amino acid sequence by known techniques such as fluorescent microscopy, FRET or other, wavelength detection equipment.


Kits


In some embodiments, the present disclosure provides kits for cell administration and treatment of cancer in a subject in need thereof comprising at least one bacterial cell disclosed herein. In some embodiments, the kit comprises cell growth media. In some embodiments, the kit comprises cell growth media in a separate vessel from the at least one bacterial cell. In some embodiments, the kit further comprises cells of the cell type of interest. In some embodiments, the kits provide


Methods


The present invention relates to methods of treating and preventing cancer. In some embodiments, the methods comprise the step of administering the pharmaceutical compositions, compositions or food disclosed herein to treat or prevent cancer of the adrenal gland, bladder, bone, bone marrow, brain, spine, breast, cervix, gall bladder, ganglia, gastrointestinal tract, stomach, colon, heart, kidney, liver, lung, muscle, ovary, pancreas, parathyroid, penis, prostate, salivary glands, skin, spleen, testis, thymus, thyroid, or uterus. In some embodiments, the methods comprise the step of administering a therapeutically effective dose of at least one bacterial cell as a component of the pharmaceutical compositions, compositions or food disclosed herein to treat or prevent cancer of the adrenal gland, bladder, bone, bone marrow, brain, spine, breast, cervix, gall bladder, ganglia, gastrointestinal tract, stomach, colon, heart, kidney, liver, lung, muscle, ovary, pancreas, parathyroid, penis, prostate, salivary glands, skin, spleen, testis, thymus, thyroid, or uterus. In some embodiments, the methods comprise the step of administering a therapeutically effective dose of the pharmaceutical compositions, compositions or food disclosed herein to treat or prevent cancer of the adrenal gland, bladder, bone, bone marrow, brain, spine, breast, cervix, gall bladder, ganglia, gastrointestinal tract, stomach, colon, heart, kidney, liver, lung, muscle, ovary, pancreas, parathyroid, penis, prostate, salivary glands, skin, spleen, testis, thymus, thyroid, or uterus. In some embodiments, the methods comprise the step of administering a therapeutically effective dose of at least one bacterial cell as a component of the pharmaceutical compositions, compositions or food disclosed herein to treat or prevent the growth or spread of metastatic cancer. In some embodiments, the invention relates to any of the disclosed methods comprising the step of administering a therapeutically effective dose of at least one bacterial cell as a component of the pharmaceutical compositions, compositions or food disclosed herein.


Embodiments include methods of using tumor-targeted bacteria to identify a therapeutically effective dose of therapeutic agent in a solid tumor, the method comprising administering any of the compositions, pharmaceutical compositions, or food products disclosed herein to a subject in need thereof. In some embodiments, the subject is suspected of having or has been diagnosed with cancer or metastatic cancer.


Embodiments also include methods of using tumor-targeted bacteria to deliver a timed therapeutically effective dose of therapeutic agent in regular intervals in a solid tumor, the method comprising administering any of the compositions, pharmaceutical compositions, or food products disclosed herein to a subject in need thereof. In some embodiments, the subject is suspected of having or has been diagnosed with cancer or metastatic cancer. In some embodiments, the methods herein comprise administering one or more stimuli that activate the promoter sequence or sequences and induce expression of one or more coding sequence on the one or more nucleic acid sequences residing in the at least one bacterial cell. Based upon the time administration of the one or more stimuli, bacteria that colonize cancer cells, solid tumors, or cells associated with hyperproliferative disorders may release, secrete, or express cellular toxins, therapeutic agents, or amino acids comprising one or more cell death domains.


The invention also relates to a method of predicting the quantitative expression or dosage of a therapeutic agent in a subject, the method comprising: administering any of the compositions, pharmaceutical compositions or food stuff disclosed herein.


REFERENCES



  • Danino et al., ACS Synthetic Biology, 2012, 1, pages 465-470.

  • [1] J. C. Anderson, E. J. Clarke, A. P. Arkin, and C. A. Voigt. Environmentally controlled invasion of cancer cells by engineered bacteria. Journal of molecular biology, 355(4):619-627, 2006.

  • [2] M. Cronin, A. R. Akin, S. A. Collins, J. Meganck, J. B. Kim, C. K. Baban, S. A. Joyce, G. M. van Dam, N. Zhang, D. van Sinderen, et. al. High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting, PloS one, 7(1):e3 0940, 2012.

  • [3] L. H. Dang, C. Bettegowda, D. L. Huso, K. W. Kinzler, and B. Vogelstein. Combination bacteriolytic therapy for the treatment of experimental tumors. Proceedings of the National Academy of Sciences of the United States of America, 98(26): 15155, 2001.

  • [4] T. Danino, O. Mondragon-Palomino, L. Tsimring, and J. Hasty. A synchronized quorum of genetic clocks. Nature, 463(7279):326-330, 2010, PMID:20090747.

  • [5] N. S. Forbes. Engineering the perfect (bacterial) cancer therapy. Nature Reviews Cancer, 10(11):785-794, 2010.

  • [6] H. Guo, J. Zhang, and C. Inal. Targeting tumor gene by shrna-expressing Salmonella-mediated rnai. Gene therapy, 18(1):95-105, 2010.

  • [7] J. Hasty, D. McMillen, and J. J. Collins. Engineered gene circuits. Nature, 420(6912):224-230, 2002.

  • [8] D. M. Heimann and S. A. Rosenberg. Continuous intravenous administration of live genetically modified Salmonella typhimurium in patients with metastatic melanoma. Journal of immunotherapy (Hagerstown, Md.: 1997), 26(2): 179, 2003.

  • [9] R. M. Hoffman. Tumor-seeking Salmonella amino acid auxotrophs. Current Opinion in Biotechnology, 2011.

  • [10] E. L. Hohmann, C. A. Oletta, and S. I. Miller. Evaluation of a phop/phoq-deleted, aroa-deleted live oral Salmonella typhi vaccine strain in human volunteers. Vaccine, 14(1):19-24, 1996.

  • [11] X. Huang and C. S. Brazel. On the importance and mechanisms of burst release in matrix-controlled drug delivery systems. Journal of Controlled Release, 73(2):121-136, 2001.

  • [12] S. Leschner, K. Westphal, N. Dietrich, N. Viegas, J. Jablonska, M. Lyszkiewicz, S. Lienenklaus, W. Falk, N. Gekara, H. Loessner, et al. Tumor invasion of Salmonella enterica serovar typhimurium is accompanied by strong hemorrhage promoted by tnf-a. PloS one, 4(8):e6692, 2009.

  • [13] Z. Lm, X. Luo, M. Feng, Z. Li, M. Ittensohn, M. Trailsmith, D. Bermudes, S L Lin, I C King, et al. Tumor amplified protein expression therapy: Salmonella as a tumor-selective protein delivery vector. Oncology Research Featuring Preclinical and Clinical Cancer Therapeutics, 12(3):127-135, 2001.

  • [14] V. H. Nguyen, H. S. Kim, J. M. Ha, Y. Hong, H. E. Choy, and J. J. Min. Genetically engineered Salmonella typhimurium as an imageable therapeutic probe for cancer. Cancer research, 70(1): 18, 2010.

  • [15] J. M. Pawelek, K. B. Low, and D. Bermudes. Tumor-targeted Salmonella as a novel anticancer vector. Cancer research, 57(20):4537, 1997.

  • [16] D. C. Pecota, C. S. Kim, K. Wu, K. Gerdes, and T. K. Wood. Combining the hok/sok, parde, and pnd postsegregational killer loci to enhance plasmid stability. Applied and environmental microbiology, 63(5): 1917-1924, 1997.

  • [17] A. Prindle, P. Samayoa, I. Razinkov, T. Danino, L. S. Tsimring, and J. Hasty. A sensing array of radically coupled genetic/biopixels/’. Nature, 2011.

  • [18] F. M. Stewart and B. R. Levin. The population biology of bacterial plasmids: a priori conditions for the existence of conjugationally transmitted factors. Genetics, 87(2):209-228, 1977.

  • [19] J. F. Toso, V. J. Gill, P. Hwu, F. M. Marincola, N. P. Restifo, D. J. Schwartzentruber, R. M. Sherry, S. L. Topalian, J. C. Yang, F. Stock, et al. Phase i study of the intravenous administration of attenuated Salmonella typhimurium to patients with metastatic melanoma. Journal of clinical oncology, 20(1): 142, 2002.

  • [20] D. Q. Xu, L. Zhang, D. J. Kopecko, L. Gao, Y. Shao, B. Guo, and L. Zhao. Bacterial delivery of sirnas: a new approach to solid tumor therapy. Methods in Molecular Biology, 487:161-187, 2009.

  • [21] A. Y. Yong, S. Shabahang, T. M. Timiryasova, Q. Zhang, R. Beltz, I. Gentschev, W. Goebel, and A. A. Szalay. Visualization of tumors and metastases in live animals with bacteria and vaccinia virus encoding light-emitting proteins. Nature biotechnology, 22(3):313-320, 2004.

  • [22] M. Zhao, M. Yang, X. M. Li, P. Jiang, E. Baranov, S. Li, M. Xu, S. Penman, and R. M. Hoffman. Tumor-targeting bacterial therapy with amino acid auxotrophs of gfp-expressing Salmonella typhimurium. Proceedings of the National Academy of Sciences of the United States of America, 102(3):755, 2005.

  • [23] M. Zhao, M. Yang, H. Ma, X. Li, X. Tan, S. Li, Z. Yang, and R. M. Hoffman. Targeted therapy with a Salmonella typhimurium leucine-arginine auxotroph cures orthotopic human breast tumors in nude mice. Cancer research, 66(15):7647, 2006.

  • [24] S. Zhou, M. Zhang, and J. Wang. Tumor-targeted delivery of tat-apoptin fusion gene using Escherichia coli nissle 1917 to colorectal cancer. Medical Hypotheses, 76(4):533-534, 2011.


    Any and all journal articles, patent applications, issued patents, or other cited references disclosed herein are incorporated by reference in their respective entireties.



EXAMPLES
Example 1

A single plasmid, p-TD106-DD was generated by subcloning coding sequences into a synthesized DNA molecule by known molecular biology techniques. We transformed the DNA into bacteria to use for quorum sensing as means to deliver therapeutic payloads to a cancer cell. A restriction enzyme map of the plasmid is depicted in FIG. 1A.


The sequence of the plasmid (SEQ ID NO:1) follows:









ctcgagttaatttttaaagtatgggcaatcaattgctcctgttaaaattg





ctttagaaatactttggcagcggtttgttgtattgagtttcatttgcgca





ttggttaaatggaaagtgacagtacgctcactgcagcctaatatttttga





aatatcccaagagctttttccttcgcatgcccacgctaaacattcttttt





ctcttttggttaaatcgttgtttgatttattatttgctatatttattttt





cgataattatcaactagagaaggaacaattaatggtatgttcatacacgc





atgtaaaaataaactatctatatagttgtctttttctgaatgtgcaaaac





taagcattccgaagccattgttagccgtatgaatagggaaactaaaccca





gtgataagacctgatgttttcgcttctttaattacatttggagatttttt





atttacagcattgttttcaaatatattccaattaattggtgaatgattgg





agttagaataatctactataggatcatattttattaaattagcgtcatca





taatattgcctccattttttagggtaattatctagaattgaaatatcaga





tttaaccatagaatgaggataaatgatcgcgagtaaataatattcacaat





gtaccattttagtcatatcagataagcattgattaatatcattattgctt





ctacaagctttaattttattaattattctgtatgtgtcgtcggcatttat





gtttttcatacccatctctttatccttacctattgtttgtcgcaagtttt





gcgtgttatatatcattaaaacggtaatggattgacatttgattctaata





aattggatttttgtcacactattgtatcgctgggaatacaattacttaac





ataagcacctgtaggatcgtacaggtttacgcaagaaaatggtttgttat





agtcgaatgaattcattaaagaggagaaaggtaccatgactataatgata





aaaaaatcggattttttggcaattccatcggaggagtataaaggtattct





aagtcttcgttatcaagtgtttaagcaaagacttgagtgggacttagttg





tagaaaataaccttgaatcagatgagtatgataactcaaatgcagaatat





atttatgcttgtgatgatactgaaaatgtaagtggatgctggcgtttatt





acctacaacaggtgattatatgctgaaaagtgtttttcctgaattgcttg





gtcaacagagtgctcccaaagatcctaatatagtcgaattaagtcgtttt





gctgtaggtaaaaatagctcaaagataaataactctgctagtgaaattac





aatgaaactatttgaagctatatataaacacgctgttagtcaaggtatta





cagaatatgtaacagtaacatcaacagcaatagagcgatttttaaagcgt





attaaagttccttgtcatcgtattggagacaaagaaattcatgtattagg





tgatactaaatcggttgtattgtctatgcctattaatgaacagtttaaaa





aagcagtcttaaatgcagcgaacgacgaaaattacgcccttgcagcgtaa





acgcgtgctagaggcatcaaataaaacgaaaggctcagtcgaaagactgg





gcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggac





aaatccgccgccctagacctagcatttttaaagtatgggcaatcaattgc





tcctgttaaaattgctttagaaatactttggcagcggtttgttgtattga





gtttcatttgcgcattggttaaatggaaagtgacagtacgctcactgcag





cctaatatttttgaaatatcccaagagctttttccttcgcatgcccacgc





taaacattctttttctcttttggttaaatcgttgtttgatttattatttg





ctatatttatttttcgataattatcaactagagaaggaacaattaatggt





atgttcatacacgcatgtaaaaataaactatctatatagttgtctttttc





tgaatgtgcaaaactaagcattccgaagccattgttagccgtatgaatag





ggaaactaaacccagtgataagacctgatgttttcgcttctttaattaca





tttggagattttttatttacagcattgttttcaaatatattccaattaat





tggtgaatgattggagttagaataatctactataggatcatattttatta





aattagcgtcatcataatattgcctccattttttagggtaattatctaga





attgaaatatcagatttaaccatagaatgaggataaatgatcgcgagtaa





ataatattcacaatgtaccattttagtcatatcagataagcattgattaa





tatcattattgcttctacaagctttaattttattaattattctgtatgtg





tcgtcggcatttatgtttttcatacccatctctttatccttacctattgt





ttgtcgcaagttttgcgtgttatatatcattaaaacggtaatggattgac





atttgattctaataaattggatttttgtcacactattgtatcgctgggaa





tacaattacttaacataagcacctgtaggatcgtacaggtttacgcaaga





aaatggtttgttatagtcgaatgaattcattaaagaggagaaaggtacca





tgactaaaaaaatttcattcattattaacggccaggttgaaatctttccc





gaaagtgatgatttagtgcaatccattaattttggtgataatagtgttta





cctgccaatattgaatgactctcatgtaaaaaacattattgattgtaatg





gaaataacgaattacggttgcataacattgtcaattttctctatacggta





gggcaaagatggaaaaatgaagaatactcaagacgcaggacatacattcg





tgacttaaaaaaatatatgggatattcagaagaaatggctaagctagagg





ccaattggatatctatgattttatgttctaaaggcggcctttatgatgtt





gtagaaaatgaacttggttctcgccatatcatggatgaatggctacctca





ggatgaaagttatgttcgggcttttccgaaaggtaaatctgtacatctgt





tggcaggtaatgttccattatctgggatcatgtctatattacgcgcaatt





ttaactaagaatcagtgtattataaaaacatcgtcaaccgatccttttac





cgctaatgcattagcgttaagttttattgatgtagaccctaatcatccga





taacgcgctctttatctgttatatattggccccaccaaggtgatacatca





ctcgcaaaagaaattatgcgacatgcggatgttattgtcgcttggggagg





gccagatgcgattaattgggcggtagagcatgcgccatcttatgctgatg





tgattaaatttggttctaaaaagagtctttgcattatcgataatcctgtt





gatttgacgtccgcagcgacaggtgcggctcatgatgtttgtttttacga





tcagcgagcttgtttttctgcccaaaacatatattacatgggaaatcatt





atgaggaatttaagttagcgttgatagaaaaacttaatctatatgcgcat





atattaccgaatgccaaaaaagattttgatgaaaaggcggcctattcttt





agttcaaaaagaaagcttgtttgctggattaaaagtagaggtggatattc





atcaacgttggatgattattgagtcaaatgcaggtgtggaatttaatcaa





ccacttggcagatgtgtgtaccttcatcacgtcgataatattgagcaaat





attgccttatgttcaaaaaaataagacgcaaaccatatctatttttcctt





gggagtcatcatttaaatatcgagatgcgttagcattaaaaggtgcggaa





aggattgtagaagcaggaatgaataacatatttcgagttggtggatctca





tgacggaatgagaccgttgcaacgartagtgacatatatttctcatgaaa





ggccatctaactatacggctaaggatgttgcggttgaaatagaacagact





cgattcctggaagaagataagttccttgtatttgtcccataataggtaaa





agtatggaaaatgaatcaaaatataaaaccatcgaccacgttatttgtgt





tgaaggaaataaaaaaattcatgtttgggaaacgctgccagaagaaaaca





gcccaaagagaaagaatgccattattattgcgtctggttttgcccgcagg





atggatcattttgctggtctggcggaatatttatcgcggaatggatttca





tgtgatccgctatgattcgcttcaccacgttggattgagttcagggacaa





ttgatgaatttacaatgtctataggaaagcagagcttgttagcagtggtt





gattggttaactacacgaaaaataaataacttcggtatgttggcttcaag





cttatctgcgcggatagcttatgcaagcctatctgaaatcaatgcttcgt





ttttaatcaccgcagtcggtgttgttaacttaagatattctcttgaaaga





gctttagggtttgattatctcagtctacccattaatgaattgccggataa





tctagattttgaaggccataaattgggtgctgaagtctttgcgagagatt





gtcttgattttggttgggaagatttagcttctacaattaataacatgatg





tatcttgatataccgtttattgcttttactgcaaataacgataattgggt





caagcaagatgaagttatcacattgttatcaaatattcgtagtaatcgat





gcaagatatattctttgttaggaagttcgcatgacttgagtgaaaattta





gtggtcctgcgcaatttttatcaatcggttacgaaagccgctatcgcgat





ggataatgatcatctggatattgatgttgatattactgaaccgtcatttg





aacatttaactattgcgacagtcaatgaacgccgaatgagaattgagatt





gaaaatcaagcaatttctctgtcttaaaatctattgagatattctatcac





tcaaatagcaatataaggactctctatgaaatttggaaactttttgctta





cataccaacctccccaattttctcaaacagaggtaatgaaacgtttggtt





aaattaggtcgcatctctgaggagtgtggttttgataccgtatggttact





ggagcatcatttcacggagtttggtttgcttggtaacccttatgtcgctg





ctgcatatttacttggcgcgactaaaaaattgaatgtaggaactgccgct





attgttcttcccacagcccatccagtacgccaacttgaagatgtgaattt





attggatcaaatgtcaaaaggacgatttcggtttggtatttgccgagggc





tttacaacaaggactttcgcgtattcggcacagatatgaataacagtcgc





gccttagcggaatgctggtacgggctgataaagaatggcatgacagaggg





atatatggaagctgataatgaacatatcaagttccataaggtaaaagtaa





accccgcggcgtatagcagaggtggcgcaccggtttatgtggtggctgaa





tcagcttcgacgactgagtgggctgctcaatttggcctaccgatgatatt





aagttggattataaatactaacgaaaagaaagcacaacttgagctttata





atgaagtggctcaagaatatgggcacgatattcataatatcgaccattgc





ttatcatatataacatctgtagatcatgactcaattaaagcgaaagagat





ttgccggaaatttctggggcattggtatgattcttatgtgaatgctacga





ctatttttgatgattcagaccaaacaagaggttatgatttcaataaaggg





cagtggcgtgactttgtattaaaaggacataaagatactaatcgccgtat





tgattacagttacgaaatcaatcccgtgggaacgccgcaggaatgtattg





acataattcaaaaagacattgatgctacaggaatatcaaatatttgttgt





ggatttgaagctaatggaacagtagacgaaattattgcttccatgaagct





cttccagtctgatgtcatgccatttcttaaagaaaaacaacgttcgctat





tatattagctaaggagaaagaaatgaaatttggattgttcttccttaact





tcatcaattcaacaactgttcaagaacaaagtatagttcgcatgcaggaa





ataacggagtatgttgataagttgaattttgaacagattttagtgtatga





aaatcatttttcagataatggtgttgtcggcgctcctctgactgtttctg





gttttctgctcggtttaacagagaaaattaaaattggttcattaaatcac





atcattacaactcatcatcctgtcgccatagcggaggaagcttgcttatt





ggatcagttaagtgaagggagatttattttagggtttagtgattgcgaaa





aaaaagatgaaatgcatttttttaatcgcccggttgaatatcaacagcaa





ctatttgaagagtgttatgaaatcattaacgatgctttaacaacaggcta





ttgtaatccagataacgatttttatagcttccctaaaatatctgtaaatc





cccatgcttatacgccaggcggacctcggaaatatgtaacagcaaccagt





catcatattgttgagtgggcggccaaaaaaggtattcctctcatctttaa





gtgggatgattctaatgatgttagatatgaatatgctgaaagatataaag





ccgttgcggataaatatgacgttgacctatcagagatagaccatcagtta





atgatattagttaactataacgaagatagtaataaagctaaacaagagac





gcgtgcatttattagtgattatgttcttgaaatgcaccctaatgaaaatt





tcgaaaataaacttgaagaaataattgcagaaaacgctgtcggaaattat





acggagtgtataactgcggctaagttggcaattgaaaagtgtggtgcgaa





aagtgtattgctgtcctttgaaccaatgaatgatttgatgagccaaaaaa





atgtaatcaatattgttgatgataatattaagaagtaccacatggaatat





acctaatagatttcgagttgcagcgaggcggcaagtgaacgaatccccag





gagcatagataactatgtgactggggtgagtgaaagcagccaacaaagca





gcagcttgaaagatgaagggtataaaagagtatgacagcagtgctgccat





actttctaatattatcttgaggagtaaaacaggtatgacttcatatgttg





ataaacaagaaattacagcaagctcagaaattgatgatttgattttttcg





agcgatccattagtgtggtcttacgacgagcaggaaaaaatcagaaagaa





acttgtgcttgatgcatttcgtaatcattataaacattgtcgagaatatc





gtcactactgtcaggcacacaaagtagatgacaatattacggaaattgat





gacatacctgtattcccaacatcggtttttaagtttactcgcttattaac





ttctcaggaaaacgagattgaaagttggtttaccagtagcggcacgaatg





gtttaaaaagtcaggtggcgcgtgacagattaagtattgagagactctta





ggctctgtgagttatggcatgaaatatgttggtagttggtttgatcatca





aatagaattagtcaatttgggaccagatagatttaatgctcataatattt





ggtttaaatatgttatgagtttggtggaattgttatatcctacgacattt





accgtaacagaagaacgaatagattttgttaaaacattgaatagtcttga





acgaataaaaaatcaagggaaagatctttgtcttattggttcgccatact





ttatttatttactctgccattatatgaaagataaaaaaatctcattttct





ggagataaaagcctttatatcataaccggaggcggctggaaaagttacga





aaaagaatctctgaaacgtgatgatttcaatcatcttttatttgatactt





tcaatctcagtgatattagtcagatccgagatatatttaatcaagttgaa





ctcaacacttgtttctttgaggatgaaatgcagcgtaaacatgttccgcc





gtgggtatatgcgcgagcgcttgatcctgaaacgttgaaacctgtacctg





atggaacgccggggttgatgagttatatggatgcgtcagcaaccagttat





ccagcatttattgttaccgatgatgtcgggataattagcagagaatatgg





taagtatcccggcgtgctcgttgaaattttacgtcgcgtcaatacgagga





cgcagaaagggtgtgctttaagcttaaccgaagcgtttgatagttgataa





acgcgtgctagaggcatcaaataaaacgaaaggctcagtcgaaagactgg





gcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggac





aaatccgccgcctagctaatttttaaagtatgggcaatcaattgctcctg





ttaaaartgctttagaaatactttggcagcggtttgttgtattgagtttc





atttgcgcattggttaaatggaaagtgacagtacgctcactgcagcctaa





tatttttgaaatatcccaagagctttttccttcgcatgcccacgctaaac





attctttttctcttttggttaaatcgttgtttgatttattatttgctata





tttatttttcgataattatcaactagagaaggaacaattaatggtatgtt





catacacgcatgtaaaaataaactatctatatagttgtctttttctgaat





gtgcaaaactaagcattccgaagccattgttagccgtatgaatagggaaa





ctaaacccagtgataagacctgatgttttcgcttctttaattacatttgg





agattttttatttacagcattgttttcaaatatattccaattaattggtg





aatgattggagttagaataatctactataggatcatattttattaaatta





gcgtcatcataatattgcctccattttttagggtaattatctagaattga





aatatcagatttaaccatagaatgaggataaatgatcgcgagtaaataat





attcacaatgtaccattttagtcatatcagataagcattgattaatatca





ttattgcttctacaagctttaattttattaattattctgtatgtgtcgtc





ggcatttatgtttttcatacccatctctttatccttacctattgtttgtc





gcaagttttgcgtgttatatatcattaaaacggtaatggattgacatttg





attctaataaattggatttttgtcacactattgtatcgctgggaatacaa





ttacttaacataagcacctgtaggatcgtacaggtttacgcaagaaaatg





gtttgttatagtcgaatgaattcattaaagaggagaaaggtaccatgccc





tccaaatccttggttatggaatatttggctcatcccagtacactcggctt





ggctgttggagttgcttgtggcatgtgcctgggctggagccttcgagtat





gctttgggatgctccccaaaagcaagacgagcaagacacacacagatact





gaaagtgaagcaagcatcttgggagacagctctcgaggtaccggcggcgg





cagcctgggcgatccgaacagcggctgccgcggcgataaaggcccggatt





gctaaaagcttaattagctgatctagacgcgtgctagaggcatcaaataa





aacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttg





tcggtgaacgctctcctgagtaggacaaatccgccgccctagacctaggg





gatatattccgcttcctcgctcactgactcgctacgctcggtcgttcgac





tgcggcgagcggaaatggcttacgaacggggcggagatttcctggaagat





gccaggaagatacttaacagggaagtgagagggccgcggcaaagccgttt





ttccataggctccgcccccctgacaagcatcacgaaatctgacgctcaaa





tcagtggtggcgaaacccgacaggactataaagataccaggcgtttcccc





ctggcggctccctcgtgcgctctcctgttcctgcctttcggtttaccggt





gtcattccgctgttatggccgcgtttgtctcattccacgcctgacactca





gttccgggtaggcagttcgctccaagctggactgtatgcacgaacccccc





gttcagtccgaccgctgcgccttatccggtaactatcgtcttgagtccaa





cccggaaagacatgcaaaagcaccactggcagcagccactggtaattgat





ttagaggagttagtcttgaagtcatgcgccggttaaggctaaactgaaag





gacaagttttggtgactgcgctcctccaagccagttacctcggttcaaag





agttggtagctcagagaaccttcgaaaaaccgccctgcaaggcggttttt





tcgttttcagagcaagagattacgcgcagaccaaaacgatctcaagaaga





tcatcttattaatcagataaaatatttctagatttcagtgcaatttatct





cttcaaatgtagcacctgaagtcagccccatacgatataagttgttacta





gtgcttggattctcaccaataaaaaacgcccggcggcaaccgagcgttct





gaacaaatccagatggagttctgaggtcattactggatctatcaacagga





gtccaagcactcacgttaagggattttggtcatgactagtgcttggattc





tcaccaataaaaaacgcccggcggcaaccgagcgttctgaacaaatccag





atggagttctgaggtcattactggatctatcaacaggagtccaagcgagc





tctcgaaccccagagtcccgctcagaagaactcgtcaagaaggcgataga





aggcgatgcgctgcgaatcgggagcggcgataccgtaaagcacgaggaag





cggtcagcccattcgccgccaagctcttcagcaatatcacgggtagccaa





cgctatgtcctgatagcggtccgccacacccagccggccacagtcgatga





atccagaaaagcggccattttccaccatgatattcggcaagcaggcatcg





ccatgggtcacgacgagatcctcgccgtcgggcatgcgcgccttgagcct





ggcgaacagttcggctggcgcgagcccctgatgctcttcgtccagatcat





cctgatcgacaagaccggcttccatccgagtacgtgctcgctcgatgcga





tgtttcgcttggtggtcgaatgggcaggtagccggatcaagcgtatgcag





ccgccgcattgcatcagccatgatggatactttctcggcaggagcaaggt





gagatgacaggagatcctgccccggcacttcgcccaatagcagccagtcc





cttcccgcttcagtgacaacgtcgagcacagctgcgcaaggaacgcccgt





cgtggccagccacgatagccgcgctgcctcgtcctgcagttcattcaggg





caccggacaggtcggtcttgacaaaaagaaccgggcgcccctgcgctgac





agccggaacacggcggcatcagagcagccgattgtctgttgtgcccagtc





atagccgaatagcctctccacccaagcggccggagaacctgcgtgcaatc





catcttgttcaatcatgcgaaacgatcctcatcctgtctcttgatcagat





cttgatcccctgcgccatcagatccttggcggcaagaaagccatccagtt





tactttgcagggcttcccaaccttaccagagggcgccccagctggcaatt





ccgacgtctaagaaaccattattatcatgacattaacctataaaaatagg





cgtatcacgaggccctttcgtcttcac






Embodiments of the invention optionally include at least one bacterial cells comprising a plasmid optionally including one or more of the following sequences:









SEQ ID NO: 2







luxR: atttttaaagtatgggcaatcaattgctcctgttaaaattgctt





tagaaatactttggcagcggtttgttgtattgagtttcatttgcgcattg





gttaaatggaaagtgacagtacgctcactgcagcctaatatttttgaaat





atcccaagagctttttccttcgcatgcccacgctaaacattctttttctc





ttttggttaaatcgttgtttgatttattatttgctatatttatttttcga





taattatcaactagagaaggaacaattaatggtatgttcatacacgcatg





taaaaataaactatctatatagttgtctttttctgaatgtgcaaaactaa





gcattccgaagccattgttagccgtatgaatagggaaactaaacccagtg





ataagacctgatgttttcgcttctttaattacatttggagattttttatt





tacagcattgttttcaaatatattccaattaattggtgaatgattggagt





tagaataatctactataggatcatattttattaaattagcgtcatcataa





tattgcctccattttttagggtaattatctagaattgaaatatcagattt





aaccatagaatgaggataaatgatcgcgagtaaataatattcacaatgta





ccattttagtcatatcagataagcattgattaatatcattattgcttcta





caagctttaattttattaattattctgtatgtgtcgtcggcatttatgtt





tttcatacccatctctttatccttacctattgtttgtcgcaagttttgcg





tgttatatatcattaaaacggtaatggattgacatttgattctaataaat





tggatttttgtcac





luxI:







SEQ ID NO: 3







atgactataatgataaaaaaatcggattttttggcaattccatcggagga





gtataaaggtattctaagtcttcgttatcaagtgtttaagcaaagacttg





agtgggacttagttgtagaaaataaccttgaatcagatgagtatgataac





tcaaatgcagaatatatttatgcttgtgatgatactgaaaatgtaagtgg





atgctggcgtttattacctacaacaggtgattatatgctgaaaagtgttt





ttcctgaattgcttggtcaacagagtgctcccaaagatcctaatatagtc





gaattaagtcgttttgctgtaggtaaaaatagctcaaagataaataactc





tgctagtgaaattacaatgaaactatttgaagctatatataaacacgctg





ttagtcaaggtattacagaatatgtaacagtaacatcaacagcaatagag





cgatttttaaagcgtattaaagttccttgtcatcgtattggagacaaaga





aattcatgtattaggtgatactaaatcggttgtattgtctatgcctatta





atgaacagtttaaaaaagcagtcttaaatgcagcgaacgacgaaaattac





gcccttgcagcg





linker cdd to irgd:







SEQ ID NO: 4







GGGGSGGGGSGGGGSLGDPNSGCRGDKGPDC





iRGD:







SEQ ID NO: 5







ggcggcggcggcagcggcggcggcggcagcggcggcggcggcagcctggg





cgatccgaacagcggctgccgcggcgataaaggcccgga ttgctaa





CDD:







SEQ ID NO: 6







atgcc ctccaaatcc ttggttatgg aatatttggc tcatcccagt





acactcggcttggctgttgg agttgcttgt ggcatgtgcc





tgggctggag ccttcgagta tgctttgggatgctccccaa





aagcaagacg agcaagacac acacagatac tgaaagtgaa





gcaagcatcttgggagacag c






In some embodiments, the at least one bacterial cell comprises SEQ ID NO:7 or a nucleci acid sequence 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homolgous to SEQ ID NO:7.









SEQ ID NO: 7 is plasmid pB33eCPX-NC-IRGD


gcaaactattaactggcgaactacttactctagcttcccggcaacaatta





atagactggatggaggcggataaagttgcaggaccacttctgcgctcggc





ccttccggctggctggtttattgctgataaatctggagccggtgagcgtg





ggtctcgcggtatcattgcagcactggggccagatggtaagccctcccgt





atcgtagttatctacacgacggggagtcaggcaactatggatgaacgaaa





tagacagatcgctgagataggtgcctcactgattaagcattggtaactgt





cagaccaagtttactcatatatactttagattgatttacgcgccctgtag





cggcgcattaagcgcggcgggtgtggtggttacgcgcagcgtgaccgcta





cacttgccagcgccctagcgcccgctcctttcgctttcttcccttccttt





ctcgccacgttcgccggctttccccgtcaagctctaaatcgggggctccc





tttagggttccgatttagtgctttacggcacctcgaccccaaaaaacttg





atttgggtgatggttcacgtagtgggccatcgccctgatagacggttttt





cgccctttgacgttggagtccacgttctttaatagtggactcttgttcca





aacttgaacaacactcaaccctatctcgggctattcttttgatttataag





ggattttgccgatttcggcctattggttaaaaaatgagctgatttaacaa





aaatttaacgcgaattttaacaaaatattaacgtttacaatttaaaagga





tctaggtgaagatcctttttgataatctcatgaccaaaatcccttaacgt





gagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatc





ttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaa





aaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaact





ctttttccgaaggtaactggcttcagcagagcgcagataccaaatactgt





ccttctagtgtagccgtagttaggccaccacttcaagaactctgtagcac





cgcctacatacctcgctctgctaatcctgttaccagtcaggcatttgaga





agcacacggtcacactgcttccggtagtcaataaaccggtaaaccagcaa





tagacataagcggctatttaacgaccctgccctgaaccgacgaccgggtc





gaatttgctttcgaatttctgccattcatccgcttattatcacttattca





ggcgtagcaccaggcgtttaagggcaccaataactgccttaaaaaaatta





cgccccgccctgccactcatcgcagtactgttgtaattcattaagcattc





tgccgacatggaagccatcacagacggcatgatgaacctgaatcgccagc





ggcatcagcaccttgtcgccttgcgtataatatttgcccatggtgaaaac





gggggcgaagaagttgtccatattggccacgtttaaatcaaaactggtga





aactcacccagggattggctgagacgaaaaacatattctcaataaaccct





ttagggaaataggccaggttttcaccgtaacacgccacatcttgcgaata





tatgtgtagaaactgccggaaatcgtcgtggtattcactccagagcgatg





aaaacgtttcagtttgctcatggaaaacggtgtaacaagggtgaacacta





tcccatatcaccagctcaccgtctttcattgccatacggaattccggatg





agcattcatcaggcgggcaagaatgtgaataaaggccggataaaacttgt





gcttatttttctttacggtctttaaaaaggccgtaatatccagctgaacg





gtctggttataggtacattgagcaactgactgaaatgcctcaaaatgttc





tttacgatgccattgggatatatcaacggtggtatatccagtgatttttt





tctccattttagcttccttagctcctgaaaatctcgataactcaaaaaat





acgcccggtagtgatcttatttcattatggtgaaagttggaacctcttac





gtgccgatcaacgtctcattttcgccaaaagttggcccagggcttcccgg





tatcaacagggacaccaggatttatttattctgcgaagtgatcttccgtc





acaggtatttattcggcgcaaagtgcgtcgggtgatgctgccaacttact





gatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct





atcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaa





aagcaccgccggacatcagcgctagcggagtgtatactggcttactatgt





tggcactgatgagggtgtcagtgaagtgcttcatgtggcaggagaaaaaa





ggctgcaccggtgcgtcagcagaatatgtgatacaggatatattccgctt





cctcgctcactgactcgctacgctcggtcgttcgactgcggcgagcggaa





atggcttacgaacggggcggagatttcctggaagatgccaggaagatact





taacagggaagtgagagggccgcggcaaagccgtttttccataggctccg





cccccctgacaagcatcacgaaatctgacgctcaaatcagtggtggcgaa





acccgacaggactataaagataccaggcgtttccccctggcggctccctc





gtgcgctctcctgttcctgcctttcggtttaccggtgtcattccgctgtt





atggccgcgtttgtctcattccacgcctgacactcagttccgggtaggca





gttcgctccaagctggactgtatgcacgaaccccccgttcagtccgaccg





ctgcgccttatccggtaactatcgtcttgagtccaacccggaaagacatg





caaaagcaccactggcagcagccactggtaattgatttagaggagttagt





cttgaagtcatgcgccggttaaggctaaactgaaaggacaagttttggtg





actgcgctcctccaagccagttacctcggttcaaagagttggtagctcag





agaaccttcgaaaaaccgccctgcaaggcggttttttcgttttcagagca





agagattacgcgcagaccaaaacgatctcaagaagatcatcttattaatc





agataaaatatttgctcatgagcccgaagtggcgagcccgatcttcccca





tcggtgatgtcggcgatataggcgccagcaaccgcacctgtggcgccggt





gatgccggccacgatgcgtccggcgtagaggatctgctcatgtttgacag





cttatcatcgatgcataatgtgcctgtcaaatggacgaagcagggattct





gcaaaccctatgctactccgtcaagccgtcaattgtctgattcgttacca





attatgacaacttgacggctacatcattcactttttcttcacaaccggca





cggaactcgctcgggctggccccggtgcattttttaaatacccgcgagaa





atagagttgatcgtcaaaaccaacattgcgaccgacggtggcgataggca





tccgggtggtgctcaaaagcagcttcgcctggctgatacgttggtcctcg





cgccagcttaagacgctaatccctaactgctggcggaaaagatgtgacag





acgcgacggcgacaagcaaacatgctgtgcgacgctggcgatatcaaaat





tgctgtctgccaggtgatcgctgatgtactgacaagcctcgcgtacccga





ttatccatcggtggatggagcgactcgttaatcgcttccatgcgccgcag





taacaattgctcaagcagatttatcgccagcagctccgaatagcgccctt





ccccttgcccggcgttaatgatttgcccaaacaggtcgctgaaatgcggc





tggtgcgcttcatccgggcgaaagaaccccgtattggcaaatattgacgg





ccagttaagccattcatgccagtaggcgcgcggacgaaagtaaacccact





ggtgataccattcgcgagcctccggatgacgaccgtagtgatgaatctct





cctggcgggaacagcaaaatatcacccggtcggcaaacaaattctcgtcc





ctgatttttcaccaccccctgaccgcgaatggtgagattgagaatataac





ctttcattcccagcggtcggtcgataaaaaaatcgagataaccgttggcc





tcaatcggcgttaaacccgccaccagatgggcattaaacgagtatcccgg





cagcaggggatcattttgcgcttcagccatacttttcatactcccgccat





tcagagaagaaaccaattgtccatattgcatcagacattgccgtcactgc





gtcttttactggctcttctcgctaaccaaaccggtaaccccgcttattaa





aagcattctgtaacaaagcgggaccaaagccatgacaaaaacgcgtaaca





aaagtgtctataatcacggcagaaaagtccacattgattatttgcacggc





gtcacactttgctatgccatagcatttttatccataagattagcggatcc





tacctgacgctttttatcgcaactctctactgtttctccatacccgtttt





tttgggctagcgaattcgagctcggtacctttgaggtggttatgaaaaaa





attgcatgtctttcagcactggccgcagttctggctttcaccgcaggtac





ttccgtagctggccagtctggccagtgtcgtggtgataaacgtggtcctg





atgaatgtggagggcagtctgggcagtctggtgactacaacaaaaaccag





tactacggcatcactgctggtccggcttaccgcattaacgactgggcaag





catctacggtgtagtgggtgtgggttatggtaaattccagaccactgaat





acccgacctacaaacacgacaccagcgactacggtttctcctacggtgcg





ggtctgcagttcaacccgatggaaaacgttgctctggacttctcttacga





gcagagccgtattcgtagcgttgacgtaggcacctggattttgtctgttg





gttaccgcttcgggagtaaatcgcgtcgcgcgacttctactgtaactggc





ggttacgcacagagcgacgctcagggccaaatgaacaaaatgggcggttt





caacctgaaataccgctatgaagaagacaacagcccgctgggtgtgatcg





gttctttcacttacaccgagaaaagccgtactgcaagctgtcgtggtgat





aaacgtggtcctgatgaatgttaataaggccaaggtggccaagcttggct





gttttggcggatgagagaagattttcagcctgatacagattaaatcagaa





cgcagaagcggtctgataaaacagaatttgcctggcggcagtagcgcggt





ggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccg





atggtagtgtggggtctccccatgcgagagtagggaactgccaggcatca





aataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgtt





gtttgtcggtgaacgctctcctgagtaggacaaatccgccgggagcggat





ttgaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgcc





ataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcc





tttttgcgtttctacaaactcttttgtttatttttctaaatacattcaaa





tatgtatccgctcatgagacaataaccctgataaatgcttcaataatatt





gaaaaaggaagagtatgagtattcaacatttccgtgtcgcccttattccc





ttttttgcggcattttgccttcctgtttttgctcacccagaaacgctggt





gaaagtaaaagatgctgaagatcagttgggtgca







The restriction map of SEQ ID NO:7 is depicted in FIG. IB.


Example 2

Synthetic biology seeks to add controlled and dynamic production of cargo by utilizing computationally-designed “circuits” that have sophisticated sensing and delivery capability. These circuits can be designed to act as delivery systems that sense tumor-specific stimuli and self-regulate cargo production as accessary. Since plasmids are the common framework for synthetic circuits, we begin by characterizing the dynamics of plasmid-based gene expression in an in vivo mouse model by utilizing real-time luminescence imaging, quantitative biodistribution measurement, and computational modeling. Together, these approaches provide a framework for exploiting the inherent instability of plasmid-based networks, which will facilitate the generation of specific temporal release profiles directly within the tumor environment.


In the context of drug delivery, a critical parameter is the rate at which a device releases drug into the surrounding environment. For instance, materials have been investigated that generate “burst”, “delayed”, or “sustained” release characteristics. The transient plasmid-based system we have developed here can generate a similar variety of expression dynamics. For instance, Strain A produces an expression profile analogous to, burst release due to its fast growth rate and high rate of plasmid loss. In contrast, Strain B yields a sustained release profile owing to its slow growth rate and moderate rate of plasmid loss. Bacteria are unique in the context of drug-delivery vehicles in that they produce their own cargo, in contrast to other devices that are pre-loaded and depleted. This allows them to deliver a time-varying concentration of cargo in a designed profile directly on site. In the future, this work will enable a variety of drug-release profiles from engineered bacteria for therapeutic applications.


Developing both experimental and computational techniques in concert will be critical to engineering in vivo genetic circuits. Computational modeling can rapidly probe system parameters to explore potential outputs but must remain closely tied to experimental results to remain relevant. On the other hand, in vivo experiments present the most direct application of engineered circuits, but involve long timescales and the results often difficult to interpret. Here, we have utilized plasmid instability to generate transient expression profiles in tumor environments. In our computational model, we can predict how dosage, strain growth rate, and plasmid loss rate combine to yield differing expression dynamics. Then, these designs can be implemented experimentally by varying plasmid type, copy number, and maintenance system or by modifying the strain growth rate. Building on this platform, future applications will include engineered gene circuits that further extend the range of expression dynamics, sensing tumor-specific stimuli and self-regulating cargo production.


Materials and Methods



S. typhimurium strains Strain A (SL1344 PhoPQ−) and Strain B (SL1344 PhoPQ− aroA−) were provided by Elizabeth Hohmann (MGH) ([10]). The constitutive plasmid bearing luxCDABE genes was received as a gift ([12]). On the day of injection, bacteria containing plasmids were diluted 1/1000× into fresh LB media (Difco, 0.22 um filtered) with antibiotics (Ampicillin 100 ug/mL) and grown up to OD600=0.4-0.6. Cells were then prepared by washing 4 times with PBS (0.22 um filtered) and measured for OD600. Colony counts were performed on the preparation as a calibration and cells were prepared at various concentrations for 100 μL injections.


Subcutaneous human xenograft tumors were generated by injecting 5×106 OVCAR-8 cells (NCI DCTD Tumor Repository, Frederick, Md.) bilaterally into the hind flanks of 4-week old female Ncr/Nu mice. Cells were grown to 80-100% confluency in RPMI1640 media supplemented with 10% fetal bovine serum and antibiotics (100 I.U./mL penicillin and 100 μg/mL streptomycin) before injection. Cells were pelleted, resuspended in phenol, red-free DMEM with 15% reduced growth factor Matrigel (BD Biosciences). Tumors were allowed to grow for 10-20 days until tumor diameters of 200-400 mm were reached.


Colony counts were measured by dissecting tumors and organs from mice, homogenizing using a Tissue-Tearor (BioSpec), and plating serial dilutions on LB and LB Ampicillin plates. Prior to imaging, mice were anesthetized with 2-3% isoflurane. IVIS signals were measured using the IVIS Spectrum imaging system (Caliper Life Sciences) with 1-60 second exposure times, and Living Image software (Caliper Life Sciences) was used for analysis. Data where the tumor had ulcerated or had low signal (maximum of trajectory did not reach above 106 radiance, or approximately 5-10× initial background) were not included.


In FIG. 2: Tumor homing bacteria and dosage variation, (a) S. typhimurium are injected via tail-vein into nude mice and localize to subcutaneous tumors where they replicate, (b) Dosages between 104 and 5×106 bacteria are injected into mice and IVIS images were taken after 24 hours. Higher initial dosages show an increasing signal and a minimum value of 5×105 bacteria required to visualize tumor colonization at 24 hours, (c) Sequence of TVTS images for strain Strain A at 106 dosage over the course of 60 hours, (d) Total flux of left (light grey) and right (dark grey) tumors as a function of time normalized to the maximum value across the trajectory. The IVIS signal rises due to rapid bacterial growth and then decays due to plasmid loss and luciferase instability.


These circuits can be designed to act as delivery systems that sense tumor-specific stimuli and self-regulate cargo production as accessary. Since plasmids are the common framework for synthetic circuits, we begin by characterizing the dynamics of plasmid-based gene expression in an in vivo mouse model by utilizing real-time luminescence imaging, quantitative biodistribution measurement, and computational modeling. Together, these approaches provide a framework for exploiting the inherent instability of plasmid-based networks, which will facilitate the generation of specific temporal release profiles directly within the tumor environment.


We began by transforming two different attenuated strains of S. typhimurium with a constitutively expressed luciferase (luxCDABE) plasmid to allow for real-time monitoring of luminescence with an in vivo imaging system (IVIS). Strain A (ELH430:SL1344 phoPQ−) is attenuated for the PhoPQ regulon which is known to activate a number of genes related to virulence while Strain B (ELH1301:SL1344 phoPQ−aroA−) contains an additional aromatic amino acid synthesis mutation which effectively allows it to grow only in nutrient-rich environments. Importantly, while these strains are derived from the same parent (SL1344), their growth rates, and therefore plasmid-loss characteristics, differ significantly. To investigate the in vivo gene expression dynamics of these strains, we generated model xenograft tumors in mice by subcutaneous injection of a human ovarian cancer cell line (OVCAR-8). After measurable tumors were established, bacterial strains were injected intravenously via tail vein (FIG. 2 A) with dosages varying from 104 to 5×106 bacteria. Once injected, bacteria specifically colonized tumors at a rate proportional to the dosage administered, as measured by IVIS signal at 24 hours post-injection (FIG. 2B).


We then monitored tumor signal over the course of 60 hours using time-lapse IVIS imaging (FIG. 2C,D). These trajectories followed the specific pattern of an initial steep increase followed by a gradual decrease back to baseline (FIG. 2D). We hypothesized that this waveform was the result of the initial exponential growth of plasmid-containing bacteria followed by increasing rates of plasmid loss in the absence of antibiotic selection. Eventually, the rate of luciferase production by the remaining plasmid-containing bacteria is overtaken by luciferase decay, and signal begins to decline. To test this hypothesis, we counted the number of plasmid-containing and non-plasmid containing bacteria in tumors over time by observing bacterial growth on selective media. FIG. 3:


Characterization of Strain A and Strain B IVIS Profiles.


Each measurement was compared to counts taken in the spleen, a control tissue where there is a stable sub-population as the bacteria accumulate but do not grow or die. At each time point, organs were excised from the mouse and then homogenized and plated with or without antibiotic selection (FIG. 3A, n=3-5 tumors). Colony counting on these plates yielded an accurate measure of the plasmid-state of the bacterial population over time (FIG. 3B). After 2 hours, roughly 3×103 plasmid-containing bacteria reside in the tumor, or about 0.3% of the injected dose. After 12 hours, plasmid-containing bacteria grow to a level of 106, and the number of non plasmid-containing bacteria reaches a similar level. This corresponds to a doubling time of approximately 75 minutes. Growth rate declined further over time, presumably due to nutrient limitation, ultimately resulting in a 300 minute doubling time for non-plasmid containing bacteria (FIG. 3B).


While the total population of bacteria grew throughout the course of the experiment (60 hours), the number of plasmid-containing bacteria reaches a maximum at 24 hours (FIG. 3B). By taking the ratio of these populations, we can calculate the percentage of plasmid-containing bacteria over time (FIG. 3C). After 12 hours, roughly 50% of the population retains the plasmid, a fraction that drops to 10% after 24 hours (FIG. 3C). The slope of this line remains constant throughout the 60-hour experiment and represents the rate of plasmid loss in the tumor environment.


The tumor-spleen ratio is commonly reported as a characteristic measure of specificity and tumor-homing ability for a given strain. Bacteria accumulate in the spleen from the initial dosing yet do not subsequently grow and divide. Given that we observed essentially no increase in the bacterial count in the spleen throughout the duration of our experiments, the tumor-spleen ratio increased over time (FIG. 3D). Since this ratio is typically reported as a fixed number in the literature, its time-dependence may help to explain the wide range of reported values.


Example 3

Modeling Bacterial Dynamics Inside of Tumor Environments


The tumor-spleen ratio is commonly reported as a characteristic measure of specificity and tumor-homing ability for a given strain. Bacteria accumulate in the spleen from the initial dosing yet do not subsequently grow and divide. Given that we observed essentially no increase in the bacterial count in the spleen throughout the duration of our experiments, the tumor-spleen ratio increased over time (FIG. 3d). Since this ratio is typically reported as a fixed number in the literature, its time-dependence may help to explain the wide range of reported values. To explore how bacterial growth rate affects the dynamics of plasmid instability over time, we injected two groups of mice with Strain A and B (at a dosage of 106) and monitored their signal over the course of 60 h. The two strains displayed markedly different profiles, with Strain A peaking and decaying sharply and the slower growing Strain B peaking broadly over a longer period of time before decaying (FIG. 4a,4b). We plot the average trajectories for Strains A and B on an absolute luminescence scale in FIG. 4c for comparison. To quantify these differences, we measured the width at half-maximum and total area under each curve for the average trajectories (FIG. 4d). These measurements illustrate that Strain A produces more luminescence quickly while Strain B produces less luminescence over a longer period of time (FIG. 4d). Additionally, to confirm that signal intensity is a representative measure of the population of plasmid-containing bacteria, we compared counts of antibiotic resistant bacteria with absolute IVIS values at the 72-h time point and found them to be highly correlated (R=0.832).


Developing a fully tunable dynamic expression platform will require a more complete understanding of the underlying processes. Plasmid-loss dynamics have been well described in a variety of in vitro and in vivo contexts; however, modeling of population or gene-expression dynamics has not yet been studied for in vivo tumor environments. Specifically, we hope to learn how expression dynamics are dictated by the rates of growth and plasmid-loss for a given strain. To accomplish this, we developed an ordinary differential equation (ODE) model describing internal plasmid and non-plasmid-containing bacteria and their respective expression of luciferase signal (FIG. 5a). Initially, No bacteria are injected. These plasmid-containing bacteria replicate and lose their plasmids at rate x, resulting in populations of plasmid (N+) and non-plasmid (N) containing bacteria that continue to grow at rates μ+ and μ−, respectively (FIG. 5a). Both populations grow exponentially for 24 h until available nutrients become limiting, a process modeled by including a finite quantity of tumor substrate that is consumed according to Michaelis-Menten kinetics. The tumor environment is also spatially restrictive of bacterial growth, with bacteria in the center consuming nutrients more slowly than bacteria on the rapidly growing periphery. Thus, despite a nearly constant population of plasmid-containing bacteria, TVTS signal fails to increase after 24 h since most of these bacteria reside in the non-growing center of the colony. We accounted for this behavior by limiting the amount of bacteria that can consume the tumor substrate, which effectively limits plasmid-containing bacterial growth and allows luciferase decay to dominate.


Our ODE model produced dynamics that were consistent with our experimental observations, where IVIS signal is taken to be proportional to the plasmid-containing population (FIG. 5b). We define the full-width at half-maximum, co, and area under the curve as important parameters that characterize the duration and magnitude of dosage, respectively (FIG. 5c). To understand how to tune in vivo expression profiles according to these parameters, we varied growth rate and dosage level and modeled the effects on IVIS signal in each case (FIGS. 5d, 5e, 5f, 5g and 5h, 5i, 5j, 5k). Lower growth rates yield IVIS curves that are shifted toward later times with broader widths and lower areas (FIG. 5d, 5e, 5f, 5g). In contrast, larger initial dosages result in a linear increase of IVIS signal that increases area but does not alter the width (FIG. 5h, 5i, 5j, 5k). The latter linear increase in area as a function of dosage is reflective of doses much lower than the carrying capacity of the system. Finally, decreasing the plasmid-loss rate resulted in an increase in area under the curve as well as a slight shift in the width and time to peak of the gene expression profile.


These effects correlate with experimental observations that can be explained based on differences in strain growth rate. Since plasmids are lost during cell division, the faster a cell replicates, the more frequently it loses plasmid. Thus, the faster growing Strain A accumulates luciferase quickly but loses a comparatively larger fraction of plasmids per day, resulting in higher IVIS values that peak at earlier time points than Strain B (FIG. 4a,b). In contrast, Strain B grows more slowly, producing less luciferase but maintaining its plasmids much longer, yielding a broader expression profile compared to Strain A (FIG. 4a,b).


In the context of drug delivery, a critical parameter is the rate at which a device releases drug into the surrounding environment. For instance, materials have been investigated that generate “burst”, “delayed”, or “sustained” release characteristics. The transient plasmid-based system we have developed here can generate a similar variety of expression dynamics. For instance, Strain A produces an expression profile analogous to burst release due to its fast growth rate and high rate of plasmid loss. In contrast, Strain B yields a sustained release profile owing to its slow growth rate and moderate rate of plasmid loss. Bacteria are unique in the context of drug-delivery vehicles in that they produce their own cargo, in contrast to other devices that are preloaded and depleted. This difference allows them to deliver a time-varying concentration of cargo in a designed profile directly on site. In the future, this work will enable a variety of drug-release profiles from engineered bacteria for therapeutic applications.


Developing both experimental and computational techniques in concert will be critical to engineering in vivo genetic circuits. Computational modeling can rapidly probe system parameters to explore potential outputs but must remain closely tied to experimental results to remain relevant. On the other hand, in vivo experiments present the most direct application of engineered circuits, but involve long time scales and the results are often difficult to interpret. Here, we have utilized plasmid instability to generate transient expression profiles in tumor environments. In our computational model, we can predict how dosage, strain growth rate, and plasmid loss rate combine to yield differing expression dynamics. Subsequently, these designs can be implemented experimentally by varying plasmid type, copy number, and maintenance system or by modifying the strain growth rate. Building on this platform, future applications will include engineered gene circuits that further extend the range of expression dynamics, sensing tumor-specific stimuli and self-regulating cargo production.


Computational models are further explained by way of functions that can be used to determine rate of plasmid loss in a function of concentration of substrate for bacterial growth. Our ordinary differential equation model is presented below in non-dimensional form. The model describes the dynamics of two populations of bacteria, those containing the luminescent plasmid (n+) and those who have lost the plasmid (n−). The two populations grow inside the tumor environment and consume a substrate (S) which is in limited supply.











dn
+

dt

=



(

1
-
τ

)



μ
+



n
+


-


γ
+



n
+







(
1
)








dn
-

dt

=



μ
-



n
-


+


τμ
+



n
+


-


γ
-



n
-







(
2
)







dS
dt

=

-


[




μ
-



n
-



A
-


-



μ
+



n
+



A
+



]



[

1

1
+

q
·

(


n
-

+

n
+


)




]







(
3
)







μ
+

=





μ
max
+


S


K
+
S








μ
-


=



μ
max
-


S


K
+
S







(
4
)








The parameters above are x, the rate at which cells lose plasmid, μ+max and μ−max, the maximal growth of plasmid and non-plasmid containing cells respectively. K, the Michaelis-saturation constant of growth rate, A+ and A−, the depletion rate constants of substrate S by μ+ and μ−cells. γ+ and γ−, the death rates of the bacteria, and q, the rate at which tumor substrate depletion is limited by the maximal amount of cells. This last term is to account for the fact that a limited number of bacteria (those on the outward growing rim) can contribute to the decay of the tumor substrate. The model is non-dimensionalized by hours, 1 bacteria, and a substrate concentration of μM.


The total in vivo system (IVIS) signal is reflective of the number of luciferase enzymes and hence the number of actively expressing luciferase bacteria. As an approximation to this signal, we modeled the signal to be proportional to the number of plasmid containing cells (dominant contribution to the IVIS signal) minus the first-order decay of the luciferase enzyme. We assume that each bacterium containing a plasmid contributes equally to the IVIS signal although there is likely variability due to the distribution of plasmids per cell in a population as well as contributions from non-plasmid containing bacteria where luciferase is not yet significantly diluted. Another approximation in the IVIS signal arises in that plasmid-containing bacteria initially populate the tumor core and express luciferase, but as bacteria grow radially to a larger population, less nutrients are left for the bacteria in the center to express any of the luxCDABE genes (either luciferase or luciferin substrates), which are the main contributors to the IVIS signal. This results in colony counts reaching a nearly steady-state as a function of time but expression level plateauing, causing an decay in IVIS signal due luciferase instability. The rate of change of the luciferase enzymes is given by:








d





L

dt

=

Bn
+
μ
+

(

1
-
τ
-
γ
+

/
μ

+

)

-


γ
L


L







where B represents the number of rate of expression of luciferase per cell and gL represents the luciferase decay. The IVIS signal (I) is proportional to the luciferase signal, i.e., I=xL, which scales parameters B and γL accordingly. The value of k contains physical properties 1 such as the permitivity of skin to luciferase enzymes and number of photons emitted per enzyme. The lumped parameters chosen for the data presented in FIGS. 9A, 9B, and 9C are: t=0.2, kB=10, A+=A−=0.01, K=1000, kgL=0.3, g−=0.001, g+=0.075, q=1.6 with initial conditions n+=3365, n=0.1=0, S=1000. Supplementary FIG. 9 shows the substrate (all of Eq 3), growth rate for plasmid containing cells (Eq 4, light grey), and substrate limitation function (right bracket Eq 3, dark grey) as a function of time.


Example 4

Dose limiting toxicity of bacterial therapies is considered to be an important factor which limits the ability of bacteria to colonize tumors. Here we constructed a plasmid which expresses iRGD, a peptide known to internalize or internalize conjugated nanoparticles into tumors. We genetically expressed iRGD as a fusion to a receptor of an outer-membrane protein known as eCPX at both the N and C terminus. The expression of eCPX-iRGD depicted in Figure IB is controlled by induction with arabinose, which allows us to tune the level of iRGD expressed on the surface of the bacterial cells.



FIG. 7 depicts IVIS imaging of mice bearing subcutaneous ovarian cancer cell lines that have been injected with 1×106 bacteria. Bacteria were grown in different concentrations of arabinose beforehand, giving the bacteria different levels of expression of eCPX-iRGD on their outer surfaces. An 8× increase is shown when an optimal level of arabinose is induced. This experiment demonstrates that cancer cell toxicity can be induced and controlled by tuning the bacteria with a stimulus after transformation of a plasmid with an inducible promoter.


Quorum Sensing bacteria injected intravenously into nude mice bearing OVCAR-8 xenograft hind flank tumors at a concentration of 1×106 bacteria comprising the pTD106CDD plasmid construct (FIG. 1 A) are depicted in FIG. 6. A patchy spatial pattern is seen for luciferase expression from quorum sensing, due to the QS system only turning on in the densest parts of the tumor. In comparison the constitutively expressing luciferase plasmid appears to be more uniform. Using quorum sensing inhibitors in the drinking water for mice, we've seen that no luciferase expression appears, while adding AHL, a quorum sensing inducer, can shift the pattern from patchy to uniform.



FIG. 8 depicts signal intensity from therapeutic effect of quorum sensing circuit. After 1 day, the relative tumor size is measured by IVIS imaging. Using our pTD106CDD construct, we've shown quorum sensing prevents increase of the tumor size. Inducing our pTD106CDD system with AHL, we see a decrease in tumor size, indicating stronger expression. As controls, tumors with either no bacteria or no therapeutic continue to grow, the bacterial cells described in FIG. 6.


Programming drug expression and release can lead to more efficacious and safe therapies from live bacteria or other vectors. Here we employed a quorum sensing approach as an example of how programming bacteria can make improvements over current methods. Quorum sensing (QS) is a system bacteria use to trigger behavior when a colony reaches a certain level. We programmed our bacteria to produce a therapeutic called CDD, Cell Death Domain, which is a previously known peptide that causes cell death by apoptosis, upon reaching a quorum. CDD is a toxic peptide that would not be possible to administer systemically, thus a programmed delivery vehicle would be necessary to get it to the tumor. Our QS system ensures that many bacteria have to be present to produce CDD, and since bacterial therapies can have bacteria lodged in other organs, this allows for only the high concentration of bacteria seen in the tumor to produce CDD locally in the tumor, reducing systemic side effects. In addition, QS produces drugs with a different dynamical program, which is more in a burst fashion, while previous methods only used a constitutive always-ON method of production. This can potentially have implications in generating less drug resistance, since longer, constant exposures to a drug often lead to tumor drug resistance.









TABLE 1







Genus:









Salmonella bongori


Salmonella enterica subsp. enterica serovar 1,4,(5),12:i:-




Salmonella bongori N268-08


Salmonella enterica subsp. enterica serovar 3,10:e,h:-




Salmonella bongori NCTC 12419


Salmonella enterica subsp. enterica serovar 3,10:l,v:e,n,x




Salmonella bongori serovar 40:z35:-


Salmonella enterica subsp. enterica serovar 4,12:-:-




Salmonella bongori serovar 40:z35:- str. 95-0123


Salmonella enterica subsp. enterica serovar 4,1 2:a:-




Salmonella bongori serovar 48:i:-


Saimoneiia enterica subsp. enterica serovar 4,12:i:-




Salmonella bongori serovar 48:z35:-


Salmonella enterica subsp. enterica serovar 4,12:r:-




Salmonella bongori serovar 48:z41:—


Salmonella enterica subsp. enterica serovar 4,5,12:b:-




Salmonella bongori serovar 48:z41:— str. RKS3044


Salmonella enterica subsp. enterica serovar 4 [5],12:i:-




Salmonella bongori serovar 60:z41:-


Salmonella enterica subsp. enterica serovar 4,[5],12:r:-




Salmonella bongori serovar 66:z35:-


Salmonella enterica subsp. enterica serovar 4,[5]:b:-




Salmonella bongori serovar 66:z41:-


Salmonella enterica subsp. enterica serovar 6,7:-:-




Salmonella bongori serovar 66:z41:- str. SA19983605


Salmonella enterica subsp. enterica serovar 6,7:-:1,5




Salmonella enterica


Salmonella enterica subsp. enterica serovar 6,7:-:l,w




Salmonella enterica subsp. arizonae


Salmonella enterica subsp. enterica serovar 6,7:d:-




Salmonella enterica subsp. arizona serovar Untypable str. 73711


Salmonella enterica subsp. enterica serovar 6,7:k:-




Salmonella enterica subsp. arizonae serovar 17:z29:-


Salmonella enterica subsp. enterica serovar 6,7:l,v:-




Salmonella enterica subsp. arizonae serovar 18:z4,z23:-


Salmonella enterica subsp. enterica serovar 8,(20):-:z6




Salmonella enterica subsp. arizonae serovar 41:z4,z23:-


Salmonella enterica subsp. enterica serovar 8,(20):i:-




Salmonella enterica subsp. arizonae serovar 48:z4,z23:-


Salmonella enterica subsp. enterica serovar 9,12:-:-




Salmonella enterica subsp. arizonae serovar 53:-:-


Salmonella enterica subsp. enterica serovar 9,12:l,v:-




Salmonella enterica subsp. arizonae serovar 53:g,z51:-


Salmonella enterica subsp. enterica serovar Abaetetuba




Salmonella enterica subsp. arizonae serovar 56:z4,z23:-


Salmonella enterica subsp. enterica serovar Aberdeen




Salmonella enterica subsp. arizonae serovar 62:z36:-


Salmonella enterica subsp. enterica serovar Abony




Salmonella enterica subsp. arizonae serovar 62:z4,z23:-


Salmonella enterica subsp. enterica serovar Abortus




Salmonella enterica subsp. arizonae str. SARC 5


Salmonella enterica subsp. enterica serovar Abortusequi




Salmonella enterica subsp. diarizonae


Salmonella enterica subsp. enterica serovar Abortusovis




Salmonella enterica subsp. diarizonae serovar ‘OMG’ l,v:l,5


Salmonella enterica subsp. enterica serovar Adelaide




Salmonella enterica subsp. diarizonae serovar 35:i:z35


Salmonella enterica subsp. enterica serovar Aesch




Salmonella enterica subsp. diarizonae serovar 38:z10:z53


Salmonella enterica subsp. enterica serovar Agama




Salmonella enterica subsp. diarizonae serovar 38[k]:z35:-


Salmonella enterica subsp. enterica serovar Agona




Salmonclla enterica subsp. diarizonae serovar 42:l,v:l,5,7


Salmonella enterica subsp. enterica serovar Alabama




Salmonella enterica subsp. diarizonae serovar 42:l,v:e,n,x,z15


Salmonella enterica subsp. enterica serovar Alachua




Salmonella enterica subsp. diarizonae serovar 47:k:z35


Salmonella enterica subsp. enterica serovar Albany




Salmonella enterica subsp. diarizonae serovar 47:l,v ‘HMG’


Salmonella enterica subsp. enterica serovar Altona




Salmonella enterica subsp. diarizonae serovar 47:l,v:l,5,(7)


Salmonella enterica subsp. enterica serovar Amsterdam




Salmonella enterica subsp. diarizonae serovar 48:i:z


Salmonella enterica subsp. enterica serovar Anatum




Salmonella enterica subsp. diarizonae serovar 48:k:z35


Salmonella enterica subsp. enterica serovar Ank




Salmonella enterica subsp. diarizonae serovar 50:l,2,3:k:z


Salmonella enterica subsp. enterica serovar Antsalova




Salmonella enterica subsp. diarizonae serovar 50:k:z


Salmonella enterica subsp. enterica serovar Apapa




Salmonella enterica subsp. diarizonae serovar 50:l,v:e,n,x,z15


Salmonella enterica subsp. enterica serovar Aqua




Salmonella enterica subsp. diarizonae serovar 50:r:l,5


Salmonella enterica subsp. enterica serovar Arechavaleta




Salmonella enterica subsp. diarizonae serovar 58:z52:z35


Salmonella enterica subsp. enterica serovar Arizona




Salmonella enterica subsp. diarizonae serovar 59:zl0:-


Salmonella enterica subsp. enterica serovar Augustenborg




Salmonella enterica subsp. diarizonae serovar 59:zl0:z53


Salmonella enterica subsp. enterica serovar Austin




Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,zl5


Salmonella enterica subsp. enterica serovar Azteca




Salmonella enterica subsp. diarizonae serovar 60:r:enxzl5


Salmonella enterica subsp. enterica serovar Baildon




Salmonella enterica subsp. diarizonae serovar 60:z52:l,5


Salmonella enterica subsp. enterica serovar Banana




Salmonella enterica subsp. diarizonae serovar 60:z55:e,n,x


Salmonella enterica subsp. enterica serovar Bangkok




Salmonella enterica subsp. diarizonae serovar 61:-:1,5,7


Salmonella enterica subsp. enterica serovar Bangui




Salmonella enterica subsp. diarizonae serovar 61:c:l,5,(7)


Salmonella enterica subsp. enterica serovar Bardo




Salmonella enterica subsp. diarizonae serovar 61:k:l,5,7


Salmonella enterica subsp. enterica serovar Bareilly




Salmonella enterica subsp. diarizonae serovar 61:k:l,5,77


Salmonella enterica subsp. enterica serovar Barranquilla




Salmonella enterica subsp. diarizonae serovar 65:c:l,5,7


Salmonella enterica subsp. enterica serovar Bergen




Salmonella enterica subsp. diarizonae serovar 65:c:z


Salmonella enterica subsp. enterica serovar Berta




Salmonella enterica subsp. diarizonae serovar 061:k:l,5


Salmonella enterica subsp. enterica serovar Binza




Salmonella enterica subsp. diarizonae str. 01-005


Salmonella enterica subsp. enterica serovar Bispebjerg




Salmonella enterica subsp. diarizonae str. 36806


Salmonella enterica subsp. enterica serovar Bissau




Salmonella enterica subsp. diarizonae str. ATCC BAA-1579


Salmonella enterica subsp. enterica serovar Blegdam




Salmonella enterica subsp. enterica str. 77231


Salmonella enterica subsp. enterica serovar Blockley




Salmonella enterica subsp. enterica


Salmonella enterica subsp. enterica serovar Bonaricnsis




Salmonella enterica subsp. enterica serovar ‘02-6026 18:1 v-z-


Salmonella enterica subsp. enterica serovar Bonn



Arizona’

Salmonella enterica subsp. enterica serovar Borreze




Saimoneila enterica subsp. enterica serovar Bovismorbificans


Salmonella enterica subsp. enterica serovar Hvittingfoss




Salmonella enterica subsp. enterica serovar Braenderup


Salmonella enterica subsp. enterica serovar Idikan




Salmonella enterica subsp. enterica serovar Brandenburg


Salmonella enterica subsp. enterica serovar India




Salmonella enterica subsp. enterica serovar Bredeney


Salmonella enterica subsp. enterica serovar Indiana




Salmonella enterica subsp. enterica serovar Bron


Salmonella enterica subsp. enterica serovar Infantis




Salmonella enterica subsp. enterica serovar Brunei


Salmonella enterica subsp. enterica serovar Inverness




Salmonella enterica subsp. enterica serovar Bsilla


Salmonella enterica subsp. enterica serovar Isangi




Salmonella enterica subsp. enterica serovar Budapest


Salmonella enterica subsp. enterica serovar Istanbul




Salmonella enterica subsp. enterica serovar Bury


Salmonella enterica subsp. enterica serovar Itami




Salmonella enterica subsp. enterica serovar California


Salmonella enterica subsp. enterica serovar Javiana




Salmonella enterica subsp. enterica serovar Canada


Salmonella enterica subsp. enterica serovar Jericho




Salmonella enterica subsp. enterica serovar Caracas


Salmonella enterica subsp. enterica serovar Johannesburg




Salmonella enterica subsp. enterica serovar Carrau


Salmonella enterica subsp. enterica serovar Kahla




Salmonella enterica subsp. enterica serovar Cerro


Salmonella enterica subsp. enterica serovar Kedougou




Salmonella enterica subsp. enterica serovar Champaign


Salmonella enterica subsp. enterica serovar Kentucky




Salmonella enterica subsp. enterica serovar Chester


Salmonella enterica subsp. enterica serovar Keurmassar




Salmonella enterica subsp. enterica serovar Chincol


Salmonella enterica subsp. enterica serovar Kiambu




Salmonella enterica subsp. enterica serovar Chingola


Salmonella enterica subsp. enterica serovar Kiel




Salmonella enterica subsp. enterica serovar Choleraesuis


Salmonella enterica subsp. enterica serovar Kinshasa




Salmonella enterica subsp. enterica serovar Coeln


Salmonella enterica subsp. enterica serovar Kintambo




Salmonella enterica subsp. enterica serovar Concord


Salmonella enterica subsp. enterica serovar Kisangani




Salmonella enterica subsp. enterica serovar Coogee


Salmonella enterica subsp. enterica serovar Kitenge




Salmonella enterica subsp. enterica serovar Copenhagen


Salmonella enterica subsp. enterica serovar Kocsscn




Salmonella enterica subsp. enterica serovar Corvallis


Salmonella enterica subsp. enterica serovar Kottbus




Salmonella enterica subsp. enterica serovar Crossness


Salmonella enterica subsp. enterica serovar Krefeld




Saimoneila enterica subsp. enterica serovar Cubana


Salmonella enterica subsp. enterica serovar Kundunchi




Salmonella enterica subsp. enterica serovar Dakar


Salmonella enterica subsp. enterica serovar Kunzendorf




Salmonella enterica subsp. enterica serovar Decatur


Salmonella enterica subsp. enterica serovar Lansing




Salmonella enterica subsp. enterica serovar Derby


Salmonella enterica subsp. enterica serovar Lexington




Salmonella enterica subsp. enterica serovar Djakarta


Salmonella enterica subsp. enterica serovar Lille




Salmonella enterica subsp. enterica serovar Doorn


Salmonella enterica subsp. enterica serovar Limete




Salmonella enterica subsp. enterica serovar Dowd


Salmonella enterica subsp. enterica serovar Lindenburg




Salmonella enterica subsp. enterica serovar Dublin


Salmonella enterica subsp. enterica serovar Litchfield




Salmonella enterica subsp. enterica serovar Duesseldorf


Salmonella enterica subsp. enterica serovar Liverpool




Salmonella enterica subsp. enterica serovar Duisburg


Salmonella enterica subsp. enterica serovar Livingstone




Salmonella enterica subsp. enterica serovar Durban


Salmonella enterica subsp. enterica serovar Lomita




Salmonella enterica subsp. enterica serovar Eastbourne


Salmonella enterica subsp. enterica serovar London




Salmonella enterica subsp. enterica serovar Edinburgh


Salmonella enterica subsp. enterica serovar Macclesfield




Salmonella enterica subsp. enterica serovar Emek


Salmonella enterica subsp. enterica serovar Madelia




Salmonella enterica subsp. enterica serovar Enteritidis


Salmonella enterica subsp. enterica serovar Madjorio




Salmonella enterica subsp. enterica serovar Epinay


Salmonella enterica subsp. enterica serovar Manchester




Salmonella enterica subsp. enterica serovar Eschberg


Salmonella enterica subsp. enterica serovar Manhattan




Salmonella enterica subsp. enterica serovar Essen


Salmonella enterica subsp. enterica serovar Maracaibo




Salmonella enterica subsp. enterica serovar Etterbeek


Salmonella enterica subsp. enterica serovar Maregrosso




Salmonella enterica subsp. enterica serovar Farsta


Salmonella enterica subsp. enterica serovar Marrtens




Salmonella enterica subsp. enterica serovar Fischerhuette


Salmonella enterica subsp. enterica serovar Matopeni




Salmonella enterica subsp. enterica serovar Fischerkietz


Salmonella enterica subsp. enterica serovar Mbandaka




Salmonella enterica subsp. enterica serovar Flottbek


Salmonella enterica subsp. enterica serovar Mcleagridis




Salmonella enterica subsp. enterica serovar Freetown


Salmonella enterica subsp. enterica serovar Mgulani




Salmonella enterica subsp. enterica serovar Fresno


Salmonella enterica subsp. enterica serovar Miami




Salmonella enterica subsp. enterica serovar Fulica


Salmonella enterica subsp. enterica serovar Michigan




Salmonella enterica subsp. enterica serovar Gallinarum


Salmonella enterica subsp. enterica serovar Mikawasima




Salmonella enterica subsp. enterica serovar Gallinarum/pullorum


Salmonella enterica subsp. enterica serovar Milwaukee




Salmonella enterica subsp. enterica serovar Gamaba


Salmonella enterica subsp. enterica serovar Minneapolis




Salmonella enterica subsp. enterica serovar Gaminara


Salmonella enterica subsp. enterica serovar Minnesota




Salmonella enterica subsp. enterica serovar Garoli


Salmonella enterica subsp. enterica serovar Mississippi




Salmonella enterica subsp. enterica serovar Gatuni


Salmonella enterica subsp. enterica serovar Molade




Salmonella enterica subsp. enterica serovar Give


Salmonella enterica subsp. enterica serovar Monophasic




Saimoneila enterica subsp. enterica serovar Glostrup


Salmonella enterica subsp. enterica serovar Monschaui




Salmonella enterica subsp. enterica serovar Goettingen


Salmonella enterica subsp. enterica serovar Montevideo




Salmonella enterica subsp. enterica serovar Goldcoast


Salmonella enterica subsp. enterica serovar Moscow




Salmonella enterica subsp. enterica serovar Grumpensis


Salmonella enterica subsp. enterica serovar Muenchen




Salmonella enterica subsp. enterica serovar Gueuletapee


Salmonella enterica subsp. enterica serovar Muenster




Salmonella enterica subsp. enterica serovar Hadar


Salmonella enterica subsp. enterica serovar Mygdal




Salmonella enterica subsp. enterica serovar Haifa


Salmonella enterica subsp. enterica serovar Naestved




Salmonella enterica subsp. enterica serovar Hartford


Salmonella enterica subsp. enterica serovar Napoli




Salmonella enterica subsp. enterica serovar Havana


Salmonella enterica subsp. enterica serovar Nchanga




Salmonella enterica subsp. enterica serovar Heidelberg


Salmonella enterica subsp. enterica serovar Neukoelln




Salmonella enterica subsp. enterica serovar Ilessarek


Salmonella enterica subsp. enterica serovar Newbrunswick




Salmonella enterica subsp. enterica serovar Hillingdon


Salmonella enterica subsp. enterica serovar Newington




Saimoneila enterica subsp. enterica serovar Newlands


Salmonella enterica subsp. enterica serovar Tennessee




Salmonella enterica subsp. enterica serovar Newmexico


Salmonella enterica subsp. enterica serovar Tennyson




Salmonella enterica subsp. enterica serovar Newport


Salmonella enterica subsp. enterica serovar Texas




Salmonella enterica subsp. enterica serovar Ngili


Salmonella enterica subsp. enterica serovar Thompson




Salmonella enterica subsp. enterica serovar Niarembe


Salmonella enterica subsp. enterica serovar Tinda




Salmonella enterica subsp. enterica serovar Nima


Salmonella enterica subsp. enterica serovar Togba




Salmonella enterica subsp. enterica serovar Nitra


Salmonella enterica subsp. enterica serovar Tonev




Salmonella enterica subsp. enterica serovar Norwich


Salmonella enterica subsp. enterica serovar Toronto




Salmonella enterica subsp. enterica serovar Nottingham


Salmonella enterica subsp. enterica serovar Toulon




Salmonella enterica subsp. enterica serovar O rough


Salmonella enterica subsp. enterica serovar Travis




Salmonella enterica subsp. enterica serovar O rough O:r:l,2


Salmonella enterica subsp. enterica serovar Tripoli




Salmonella enterica subsp. enterica serovar 07:Hc:l,5


Salmonella enterica subsp. enterica serovar Tshiongwe




Salmonella enterica subsp. enterica serovar 07:Hh:l,5


Salmonella enterica subsp. enterica serovar Tucson




Salmonella enterica subsp. enterica serovar Ohio


Salmonella enterica subsp. enterica serovar Typhi




Salmonella enterica subsp. Enterica serovar Ondcrstcpoort


Salmonella enterica subsp. enterica serovar Typhimurium




Salmonella enterica subsp. enterica serovar Oranienburg


Salmonella enterica subsp. enterica serovar Typhisuis




Salmonella enterica subsp. enterica serovar Ordonez


Salmonella enterica subsp. enterica serovar Uganda




Salmonella enterica subsp. enterica serovar Orion


Salmonella enterica subsp. enterica serovar Untypable str. 75788




Salmonella enterica subsp. enterica serovar Oslo


Salmonella enterica subsp. enterica serovar Untypable str. 77116




Salmonella enterica subsp. enterica serovar Osnabrueck


Salmonella enterica subsp. enterica serovar Untypable str. 77132




Salmonella enterica subsp. enterica serovar Othmarschen


Salmonella enterica subsp. enterica serovar Untypable str. 77528




Salmonella enterica subsp. enterica serovar Ouakam


Salmonella enterica subsp. enterica serovar Untypable str. 81146




Salmonella enterica subsp. enterica serovar Ovcrvccht


Salmonella enterica subsp. enterica serovar Untypable str. 83332




Salmonella enterica subsp. enterica serovar Panama


Salmonella enterica subsp. enterica serovar Untypable str. 83987




Salmonella enterica subsp. enterica serovar Paratyphi A


Salmonella enterica subsp. enterica serovar Untypable str. 91013




Saimoneila enterica subsp. enterica serovar Paratyphi B


Salmonella enterica subsp. enterica serovar Untypable str. 91510




Salmonella enterica subsp. enterica serovar Paratyphi C


Salmonella enterica subsp. enterica serovar Untypable str. 92055




Salmonella enterica subsp. enterica serovar Pensacola


Salmonella enterica subsp. enterica serovar Uphill




Salmonella enterica subsp. enterica serovar Poano


Salmonella enterica subsp. enterica serovar Urbana




Salmonella enterica subsp. enterica serovar Poeseldorf


Salmonella enterica subsp. enterica serovar Utrecht




Salmonella enterica subsp. enterica serovar Pomona


Salmonella enterica subsp. enterica serovar Vellore




Salmonella enterica subsp. enterica serovar Poona


Salmonella enterica subsp. enterica serovar Virchow




Salmonella enterica subsp. enterica serovar Portedeslilas


Salmonella enterica subsp. enterica serovar Virginia




Salmonella enterica subsp. enterica serovar Potsdam


Salmonella enterica subsp. enterica serovar Wagenia




Salmonella enterica subsp. enterica serovar Pullorum


Salmonella enterica subsp. enterica serovar Wandsworth




Salmonella enterica subsp. enterica serovar Putten


Salmonella enterica subsp. enterica serovar Wangata




Salmonella enterica subsp. enterica serovar Quebec


Salmonella enterica subsp. enterica serovar Washington




Salmonella enterica subsp. enterica serovar Rachaburi


Salmonella enterica subsp. enterica serovar Waycross




Salmonella enterica subsp. enterica serovar Reading


Salmonella enterica subsp. enterica serovar Weltevreden




Salmonella enterica subsp. enterica serovar Richmond


Salmonella enterica subsp. enterica serovar Weslaco




Salmonella enterica subsp. enterica serovar Rissen


Salmonella enterica subsp. enterica serovar Westhampton




Salmonella enterica subsp. enterica serovar Rosenberg


Salmonella enterica subsp. enterica serovar Wien




Salmonella enterica subsp. enterica serovar Rostock


Salmonella enterica subsp. enterica serovar Worthington




Salmonella enterica subsp. enterica serovar Rubislaw


Salmonella enterica subsp. enterica serovar York




Salmonella enterica subsp. enterica serovar Saintpaul


Salmonella enterica subsp. enterica serovar Yovokome




Salmonella enterica subsp. enterica serovar Salford


Salmonella enterica subsp. enterica serovar Zaiman




Salmonella enterica subsp. enterica serovar Sandiego


Salmonella enterica subsp. enterica serovar Zanzibar




Salmonella enterica subsp. enterica serovar Sangcra


Salmonella enterica subsp. enterica str. 01-11525




Salmonella enterica subsp. enterica serovar Sanjuan


Salmonella enterica subsp. enterica str. 09-06166




Salmonella enterica subsp. enterica serovar Sanktgeorg


Salmonella enterica subsp. enterica str. 11-01213




Salmonella enterica subsp. enterica serovar Sarajane


Salmonella enterica subsp. enterica str. 11-01214




Salmonella enterica subsp. enterica serovar Schlcisshcim


Salmonella enterica subsp. enterica str. 11-01216-1




Salmonella enterica subsp. enterica serovar Schwarzengrund


Salmonella enterica subsp. enterica str. 609458-2604314 2-2




Salmonella enterica subsp. enterica serovar Sendai


Salmonella enterica subsp. enterica str. 85356




Salmonella enterica subsp. enterica serovar Senftenberg


Salmonella enterica subsp. enterica str. CFSAN004167




Salmonella enterica subsp. enterica serovar Setubal


Salmonella enterica subsp. enterica str. S703




Salmonella enterica subsp. enterica serovar Shomron


Salmonella enterica subsp. enterica str. xld




Salmonella enterica subsp. enterica serovar Simsbury


Salmonella enterica subsp. houtenae




Saimoneila enterica subsp. enterica serovar Singapore


Salmonella enterica subsp. houtenae serovar l,40:g,z51:-




Salmonella enterica subsp. enterica serovar Sloterdijk


Salmonella enterica subsp. houtenae serovar I,40:z4,z24:-




Salmonella enterica subsp. enterica serovar Soalianina


Salmonella enterica subsp. houtenae serovar 16:z4,z32:-




Salmonella enterica subsp. enterica serovar Soerenga


Salmonella enterica subsp. houtenae serovar 16:z4,z32:--




Salmonella enterica subsp. enterica serovar Stanley


Salmonella enterica subsp. houtenae serovar 40:z4,z24:-




Salmonella enterica subsp. enterica serovar Stanleyville


Salmonella enterica subsp. houtenae serovar 43:z4,z23:-




Salmonella enterica subsp. enterica serovar Stellingen


Salmonella enterica subsp. houtenae serovar 44:a:-




Salmonella enterica subsp. enterica serovar Stourbridge


Salmonella enterica subsp. houtenae serovar 44:z4,z23:-




Salmonella enterica subsp. enterica serovar Taksony


Salmonella enterica subsp. houtenae serovar 45a,b:g,z51:-




Salmonella enterica subsp. enterica serovar Tallahassee


Salmonella enterica subsp. houtenae serovar 48:g,z51:-




Salmonella enterica subsp. enterica serovar Tejas


Salmonella enterica subsp. houtenae serovar 50:g,z51:-




Salmonella enterica subsp. enterica serovar Telaviv


Salmonella enterica subsp. houtenae serovar 6,7:z4,z24:-




Saimoneila enterica subsp. houtenae serovar Houten


Salmonella sp. APK1




Salmonella enterica subsp. houtenae str. ATCC BAA-1580


Salmonella sp. ATK1




Salmonella enterica subsp. houtenae str. ATCC BAA-1581


Salmonella sp. AV(2010)




Salmonella enterica subsp. indica


Salmonella sp. BSCC 29




Salmonella enterica subsp. indica serovar l,6,14,25:a:e,n,x


Salmonella sp. BV10




Salmonella enterica subsp. indica serovar ll:b:l,7


Salmonella sp. BV34




Salmonella enterica subsp. indica serovar ll:b:e,n,x


Salmonella sp. BV37




Salmonella enterica subsp. indica serovar 45:a:e,n,x


Salmonella sp. Bz21




Salmonella enterica subsp. indica serovar 6,14,25:zl0:l,(2),7


Salmonella sp. CASMBAUKKAGK2




Salmonella enterica subsp. indica serovar 6,7:z41:l,7


Salmonella sp. CDC 156-87




Salmonella enterica subsp. indica str. ATCC BAA-1576


Salmonella sp. CMCC50041




Salmonella enterica subsp. indica str. ATCC BAA-1578


Salmonella sp. Co9901




Salmonella enterica subsp. salamae


Salmonella sp. Co9936




Salmonella enterica subsp. salamae serovar l,4,12,27:a:e,n,x


Salmonella sp. Co9937




Salmonella enterica subsp. salamae serovar l,4,12,27:b:c,n,x


Salmonella sp. CRMB13




Salmonella enterica subsp. salamae serovar l,40:zl0:e,n,x


Salmonella sp. CRMB68




Salmonella enterica subsp. salamae serovar l,9,12:d:e,n,x


Salmonella sp. CRTB1




Salmonella enterica subsp. salamae serovar 1,9,12:l,w:e,n,x


Salmonella sp. CRTB29




Salmonella enterica subsp. salamae serovar 1 l:l,z28:e,n,x


Salmonella sp. CRTB7




Salmonella enterica subsp. salamae serovar 35:g,z62:e,n,x


Salmonella sp. D187-2




Salmonella enterica subsp. salamae serovar 35:m,t:e,n,x


Salmonella sp. D194-1




Salmonella enterica subsp. salamae serovar 4,12,27:i:z35


Salmonella sp. D194-2




Salmonella enterica subsp. salamae serovar 4,12:z:l,7


Salmonella sp. D76




Salmonella enterica subsp. salamae serovar 40:zl0:e,n,x


Salmonella sp. DAPS




Salmonella enterica subsp. salamae serovar 42:f,g,t:--


Salmonella sp. DSPV 002PSA




Saimoneila enterica subsp. salamae serovar 42:l,v:e,n,x,zl5


Salmonella sp. ES-B43




Salmonella enterica subsp. salamae serovar 48:d:z6


Salmonella sp. H16-244




Salmonella enterica subsp. salamae serovar 55:k:z39


Salmonella sp. H17-62




Salmonella enterica subsp. salamae serovar 56:zl:enx


Salmonella sp. H3




Salmonella enterica subsp. salamae serovar 57:z42:l,6:z53


Salmonella sp. H48




Salmonella enterica subsp. salamae serovar 58:l,zl3,z28:z6


Salmonella sp. ICMP 15669




Salmonella enterica subsp. salamae serovar 6,7:l,w:l,5,7


Salmonella sp. Inspire71




Salmonella enterica subsp. salamae serovar 9,12:d:e,n,x


Salmonella sp. Inspire72




Salmonella enterica subsp. salamae serovar 9,12:l,v:e,n,x


Salmonella sp. Inspire73




Salmonella enterica subsp. salamae serovar Greenside


Salmonella sp. Inspire74




Salmonella enterica subsp. salamae serovar Sofia


Salmonella sp. Inspire75




Salmonella enterica subsp. salamae str. 3588/07


Salmonella sp. JPunkl-2




Salmonella enterica subsp. salamae str. ATCC BAA-15 82


Salmonella sp. LCN1-13




Salmonella enterica subsp. salamae str. ATCC BAA-15 83


Salmonella sp. LFW070403




Salmonella enterica subsp. salamae str. DMA-1


Salmonella sp. Lorraine road_2007_01




Salmonella enterica subsp. VII


Salmonella sp. Lorraine road_2007_03




Salmonella enterica VII l,40:g,z51:--


Salmonella sp. Lorraine road_2007_07




Salmonella enterica VII 40:z4,z24:--


Salmonella sp. Lorraine road_2007_08




Salmonella subterranea


Salmonella sp. Lorraine road_2007_14




Salmonella sp.


Salmonella sp. Lorraine road_2007_16




Salmonella sp. ‘group B’


Salmonella sp. Lorraine road_2007_17




Salmonella sp. 10


Salmonella sp. Lorraine road_2007_19




Salmonella sp. 14


Salmonella sp. M9




Salmonella sp. 2


Salmonella sp. M9397




Salmonella sp. 30


Salmonella sp. MRT3




Salmonella sp. 40


Salmonella sp. Pratt ave_2007_03




Salmonella sp. 4063


Salmonella sp. Pratt ave_2007_06




Salmonella sp. 4064


Salmonella sp. Pratt ave_2007_10




Salmonella sp. 4065


Salmonella sp. Pratt ave_2007_11




Salmonella sp. 4066


Salmonella sp. Pratt ave_2007_12




Salmonella sp. 4071


Salmonella sp. Pratt ave_2007_14




Salmonella sp. 4072


Salmonella sp. Pratt ave_2007_15




Salmonella sp. 4182


Salmonella sp. Pratt ave_2007_16




Saimoneila sp. 45


Salmonella sp. RG-14/07




Salmonella sp. 467


Salmonella sp. RPWA1.6




Salmonella sp. 53


Salmonella sp. RV_A06_3c




Salmonella sp. 56


Salmonella sp. s010




Salmonella sp. 577


Salmonella sp. s084




Salmonella sp. 6R


Salmonella sp. S126




Salmonella sp. 77


Salmonella sp. S138




Salmonella sp. 85 MP


Salmonella sp. S14




Salmonella sp. 8R


Salmonella sp. S191




Salmonella sp. 9


Salmonella sp. S1a




Salmonella sp. 96A-29192


Salmonella sp. SAM2




Salmonella sp. AHL 6


Salmonella sp. sc-S




Salmonella sp. SSBC3


Salmonella sp. Trautman ave_2007_26




Salmonella sp. STM13


Salmonella sp. Trautman ave_2007_27




Salmonella sp. Tla


Salmonella sp. Trautman ave_2007_28




Salmonella sp. TC67


Salmonella sp. Trautman ave_2007_29




Salmonella sp. TR-95


Salmonella sp. Vetaran hospital_2007_03




Salmonella sp. Trautman ave_2007_01


Salmonella sp. Vetaran hospital_2007_20




Salmonella sp. Trautman ave_2007_02


Salmonella sp. Veteran hospital_2007_01




Salmonella sp. Trautman ave_2007_03


Salmonella sp. Veteran hospital_2007_02




Salmonella sp. Trautman ave_2007_04


Salmonella sp. Veteran hospital_2007_07




Salmonella sp. Trautman ave_2007_05


Salmonella sp. Veteran hospital_2007_08




Salmonella sp. Trautman ave_2007_06


Salmonella sp. Veteran hospital_2007_11




Salmonella sp. Trautman ave_2007_07


Salmonella sp. Veteran hospital_2007_14




Salmonella sp. Trautman ave_2007_08


Salmonella sp. VI11




Salmonella sp. Trautman ave_2007_09


Salmonella sp. VII




Salmonella sp. Trautman ave_2007_10


Salmonella sp. WT




Salmonella sp. Trautman ave_2007_11


Salmonella sp. XJ-ZG1




Salmonella sp. Trautman ave_2007_12


Salmonella sp. YLA4




Salmonella sp. Trautman ave_2007_13


Salmonella sp. YLD3




Salmonella sp. Trautman ave_2007_14


Salmonella sp. ZKC20




Salmonella sp. Trautman ave_2007_15


Salmonella sp. ZZ-4




Salmonella sp. Trautman ave_2007_16

environmental samples



Salmonella sp. Trautman ave_2007_17


Salmonella sp. enrichment culture clone CL107




Salmonella sp. Trautman ave_2007_18


Salmonella sp. enrichment culture clone NEP50




Salmonella sp. Trautman ave_2007_19


Salmonella sp. enrichment culture clone NJ-8




Salmonella sp. Trautman ave_2007_20


Salmonella sp. enrichment culture clone TB43_1




Salmonella sp. Trautman ave_2007_21


Salmonella sp. enrichment culture clone TB43_2




Salmonella sp. Trautman ave_2007_22


Salmonella sp. enrichment culture clone TB43_3




Salmonella sp. Trautman ave_2007_23


Salmonella sp. enrichment culture clone TB43_4




Salmonella sp. Trautman ave_2007_24

uncultured Salmonella sp.



Salmonella sp. Trautman ave_2007_25









Genus: Escherichia









Escherichia albertii


Escherichia coli 10.0833




Escherichia albertii B090


Escherichia coli 10.0869




Escherichia albertii B1 56


Escherichia coli 13B01




Escherichia albertii NBRC 107761


Escherichia coli 1412




Escherichia albertii TW07627


Escherichia coli 14A




Escherichia albertii TW08933


Escherichia coli 19B05




Escherichia albertii TW11588


Escherichia coli 113290




Escherichia albertii TW15818


Escherichia coli 113302




Escherichia coli


Escherichia coli 113303




Escherichia coli O.1288


Escherichia coli 1303




Escherichia coli #1/H766


Escherichia coli 2.3941




Escherichia coli ‘BL21-Gold(DE3)pLysS AG’


Escherichia coli 2.4168




Escherichia coli O8BKT055439


Escherichia coli 2.41 74




Escherichia coli O8BKT77219


Escherichia coli 201600.1




Escherichia coli O.1197


Escherichia coli 20B05




Escherichia coli O7798


Escherichia coli 2254-75 (11a)




Escherichia coli 101-1


Escherichia coli 229_11




Escherichia coli 110957


Escherichia coli 2362-75




Escherichia coli O9BKT078844


Escherichia coli 23B03




Escherichia coli 1.0080


Escherichia coli 24B05




Escherichia coli 1.2264


Escherichia coli 2534-86




Escherichia coli 1.2741


Escherichia coli 2719100




Escherichia coli O9BKT024447


Escherichia coli 2720900




Escherichia coli O9BKT076207


Escherichia coli 179100




Escherichia coli O.1304


Escherichia coli 179550




Escherichia coli 151_06


Escherichia coli 180050




Escherichia coli 1520


Escherichia coli 180200




Escherichia coli 174750


Escherichia coli 180600




Escherichia coli 174900


Escherichia coli 1827-70




Escherichia coli 178200


Escherichia coli 199900.1




Escherichia coli 178850


Escherichia coli 2733950




Escherichia coli 178900


Escherichia coli 2735000




Escherichia coli 112469215-isolatel


Escherichia coli 2741950




Escherichia coli 112469218-isolatel


Escherichia coli 2747800




Escherichia coli 10.0562


Escherichia coli 2749250




Escherichia coli 10.0821


Escherichia coli 2756500




Escherichia coli 2762100


Escherichia coli 2860650




Escherichia coli 2770900


Escherichia coli 2861200




Escherichia coli 2780750


Escherichia coli 55989




Escherichia coli 2785200


Escherichia coli 576-1




Escherichia coli 2788150


Escherichia coli 5905




Escherichia coli 2845350


Escherichia coli 6.0172




Escherichia coli 2845650


Escherichia coli 6.168




Escherichia coli 2846750


Escherichia coli 7.1485




Escherichia coli 2846750-DM-A


Escherichia coli 7.1495




Escherichia coli 2846750-DM-B


Escherichia coli 7.1575




Escherichia coli 2846750-DM-B-A


Escherichia coli 7.3192




Escherichia coli 2846750-DM-B-B


Escherichia coli 75




Escherichia coli 2848050


Escherichia coli 754_10




Escherichia coli 2850400


Escherichia coli 79




Escherichia coli 2850750


Escherichia coli 8.0416




Escherichia coli 2851500


Escherichia coli 8.0566




Escherichia coli 2853500


Escherichia coli 8.0569




Escherichia coli 1E14


Escherichia coli 8.0586




Escherichia coli 2.073 1


Escherichia coli 8.2256




Escherichia coli 2.0966


Escherichia coli 8.2524




Escherichia coli 2.3916


Escherichia coli 83972




Escherichia coli 2862600


Escherichia coli 85.0143




Escherichia coli 2864350


Escherichia coli 85.1284




Escherichia coli 2865200


Escherichia coli 8624




Escherichia coli 2866350


Escherichia coli 87-1713(10i)




Escherichia coli 2722950


Escherichia coli 88.0221




Escherichia coli 2726800


Escherichia coli 88.1042




Escherichia coli 2726950


Escherichia coli 88.1467




Escherichia coli 2729250


Escherichia coli 88817 (10j)




Escherichia coli 2729250-DM-A


Escherichia coli 89.0511




Escherichia coli 2729250-DM-B


Escherichia coli 9.0111




Escherichia coli 2729250-DM-B-A


Escherichia coli 9.1649




Escherichia coli 2729250-DM-B-B


Escherichia coli 2866450




Escherichia coli 2730350


Escherichia coli 908616




Escherichia coli 2730450


Escherichia coli 908624




Escherichia coli 2731150


Escherichia coli 908632




Escherichia coli 2866550


Escherichia coli 908658




Escherichia coli 2866750


Escherichia coli 908675




Escherichia coli 2867750


Escherichia coli 908691




Escherichia coli 2871950


Escherichia coli 909945-2




Escherichia coli 2872000


Escherichia coli 53638




Escherichia coli 2872800


Escherichia coli 541-1




Escherichia coli 2875000


Escherichia coli 541-15




Escherichia coli 2875150


Escherichia coli 5412




Escherichia coli 2886-75


Escherichia coli 93-001




Escherichia coli 290 10


Escherichia coli 93-111




Escherichia coli 3.0190


Escherichia coli 93.0055




Escherichia coli 3.2303


Escherichia coli 93.0056




Escherichia coli 3.2608


Escherichia coli 93.0624




Escherichia coli 3.3884


Escherichia coli 94.0618




Escherichia coli 3.4870


Escherichia coli 95.0183




Escherichia coli 3.4871


Escherichia coli 95.0941




Escherichia coli 3003


Escherichia coli 95.0943




Escherichia coli 3006


Escherichia coli 95.1288




Escherichia coli 3030-1


Escherichia coli 95JB1




Escherichia coli 3350-73 (13a)


Escherichia coli 95NR1




Escherichia coli 3431


Escherichia coli 96.0107




Escherichia coli 371 08


Escherichia coli 96.0109




Escherichia coli 4.0522


Escherichia coli 96.0427




Escherichia coli 4.0967


Escherichia coli 96.0428




Escherichia coli 4_1_47FAA


Escherichia coli 96.0497




Escherichia coli 5.0588


Escherichia coli 96.0932




Escherichia coli 5.0959


Escherichia coli 96.0939




Escherichia coli 5.2219


Escherichia coli 96.154




Escherichia coli 5.2239


Escherichia coli 97.0003




Escherichia coli 5.2246


Escherichia coli 97.0007




Escherichia coli 5.3169


Escherichia coli 97.0010




Escherichia coli 536


Escherichia coli 97.0246




Escherichia coli 2854350


Escherichia coli 97.0259




Escherichia coli 2860050


Escherichia coli 97.0264




Escherichia coli 97.1742


Escherichia coli C40_11




Escherichia coli 98NK2


Escherichia coli C418_89




Escherichia coli 99.0670


Escherichia coli C458_10




Escherichia coli 99.0672


Escherichia coli C48807




Escherichia coli 99.0678


Escherichia coli C496_10




Escherichia coli 99.0713


Escherichia coli C497_10




Escherichia coli 99.0741


Escherichia coli C527_94




Escherichia coli 99.0814


Escherichia coli C54-58 (lb)




Escherichia coli 99.0815


Escherichia coli C581_05




Escherichia coli 99.0816


Escherichia coli C586_05




Escherichia coli 99.0839


Escherichia coli C58_11




Escherichia coli 99.0848


Escherichia coli C595_09




Escherichia coli 99.1753


Escherichia coli C639_08




Escherichia coli 99.1762


Escherichia coli C652_10




Escherichia coli 99.1775


Escherichia coli C654_09




Escherichia coli 99.1781


Escherichia coli C666_01




Escherichia coli 99.1793


Escherichia coli C691-71 (14b)




Escherichia coli 99.1805


Escherichia coli C717_10




Escherichia coli A-03_34


Escherichia coli C725_88




Escherichia coli A25922R


Escherichia coli C732_98




Escherichia coli A35218R


Escherichia coli C743_03




Escherichia coli A9619-c2 (11c)


Escherichia coli C751_03




Escherichia coli AA86


Escherichia coli C77_OS




Escherichia coli AB42410445-isolate1


Escherichia coli C78_09C




Escherichia coli AB4255441 8-isolate1


Escherichia coli C792_92




Escherichia coli AB42602061 -isolate1


Escherichia coli C796_10




Escherichia coli AB43739056-isolate1


Escherichia coli C799_92




Escherichia coli ABU 83972


Escherichia coli C79_08




Escherichia coli AD30


Escherichia coli C807_09




Escherichia coli ADL-218


Escherichia coli C80_08




Escherichia coli ADL-223


Escherichia coli C824_10




Escherichia coli ADL-226


Escherichia coli C82_11




Escherichia coli ADL-304


Escherichia coli C838_10




Escherichia coli ADL-305


Escherichia coli C842_97




Escherichia coli ADL-306


Escherichia coli C844_97




Escherichia coli ADL-307


Escherichia coli ADL-309




Escherichia coli ADL-308


Escherichia coli ADL-310




Escherichia coli 9.1796


Escherichia coli ADL-311




Escherichia coli 90.0039


Escherichia coli ADL-312




Escherichia coli 90.0091


Escherichia coli ADL-313




Escherichia coli 90.2281


Escherichia coli ADL-314




Escherichia coli 900105 (10e)


Escherichia coli ADL-316




Escherichia coli 902034 (7b)


Escherichia coli ADL-324




Escherichia coli 907357


Escherichia coli ADL-327




Escherichia coli 907391


Escherichia coli AI27




Escherichia coli 907446


Escherichia coli APEC IMT5155




Escherichia coli 907672


Escherichia coli APEC 01




Escherichia coli 907700


Escherichia coli APEC 078




Escherichia coli 907701


Escherichia coli ARL10/167




Escherichia coli 907710


Escherichia coli ARS4.2123




Escherichia coli 907713


Escherichia coli ATCC 25922




Escherichia coli 907715


Escherichia coli ATCC 35150




Escherichia coli 907779


Escherichia coli B




Escherichia coli 907889


Escherichia coli B str. REL606




Escherichia coli 907892


Escherichia coli B str. REL607




Escherichia coli 908519


Escherichia coli B-04_28




Escherichia coli 908521


Escherichia coli B088




Escherichia coli 908522


Escherichia coli B093




Escherichia coli 908524


Escherichia coli B102




Escherichia coli 908525


Escherichia coli B103




Escherichia coli 908541


Escherichia coli B104




Escherichia coli 908555


Escherichia coli B105




Escherichia coli 908573


Escherichia coli B106




Escherichia coli 908585


Escherichia coli B107




Escherichia coli C33_11


Escherichia coli B108




Escherichia coli C341_10


Escherichia coli B109




Escherichia coli C343_08


Escherichia coli B112




Escherichia coli C347_93


Escherichia coli B113




Escherichia coli C353_09


Escherichia coli B114




Escherichia coli C354_03B


Escherichia coli B1167




Escherichia coli 909957


Escherichia coli BIDMC 39




Escherichia coli 910096-2


Escherichia coli BIDMC 6




Escherichia coli 92.0144 (F03)


Escherichia coli BIDMC 9




Escherichia coli 929-78


Escherichia coli BL21




Escherichia coli B185


Escherichia coli BL21(DE3)




Escherichia coli B26-1


Escherichia coli BWH 24




Escherichia coli B26-2


Escherichia coli BWII 32




Escherichia coli B28-1


Escherichia coli BWH 34




Escherichia coli B28-2


Escherichia coli BWH 40




Escherichia coli B29-1


Escherichia coli C




Escherichia coli B29-2


Escherichia coli ATCC 8739




Escherichia coli B354


Escherichia coli C-04_22




Escherichia coli B36-1


Escherichia coli C-34666




Escherichia coli B36-2


Escherichia coli C1214 90




Escherichia coli B367


Escherichia coli C1244 91




Escherichia coli B40-1


Escherichia coli C12_92




Escherichia coli B40-2


Escherichia coli C154_11




Escherichia coli B41


Escherichia coli C155_11




Escherichia coli B49-1


Escherichia coli C157_11




Escherichia coli B49-2


Escherichia coli C161_11




Escherichia coli B5-1


Escherichia coli C166_11




Escherichia coli B5-2


Escherichia coli C170_11




Escherichia coli B574


Escherichia coli C186-61 (10h)




Escherichia coli B671


Escherichia coli C2139_99




Escherichia coli B7-1


Escherichia coli C213_10




Escherichia coli B7-2


Escherichia coli C238_91




Escherichia coli B706


Escherichia coli C240-52 (9c)




Escherichia coli B799


Escherichia coli C260_92




Escherichia coli B7A


Escherichia coli C262_10




Escherichia coli B83


Escherichia coli C283_09




Escherichia coli B84


Escherichia coli C295_10




Escherichia coli B85


Escherichia coli C309-64 (lOg)




Escherichia coli B86


Escherichia coli DH5[alpha]




Escherichia coli B89


Escherichia coli DSM 30083 = JCM 1649




Escherichia coli B90


Escherichia coli E-01_37




Escherichia coli B91


Escherichia coli E1002




Escherichia coli B92


Escherichia coli E101




Escherichia coli B921


Escherichia coli E110019




Escherichia coli B93


Escherichia coli E1114




Escherichia coli B94


Escherichia coli E1118




Escherichia coli B95


Escherichia coli E1167




Escherichia coli Bal225


Escherichia coli E128010




Escherichia coli BCE001_MS16


Escherichia coli E1492




Escherichia coli BCE002_MS12


Escherichia coli E1520




Escherichia coli BCE006_MS-23


Escherichia coli E1777




Escherichia coli BCE007_MS-11


Escherichia coli E2265




Escherichia coli BCE008_MS-01


Escherichia coli E24377A




Escherichia coli BCE008_MS-13


Escherichia coli E267




Escherichia coli BCEO11_MS-01


Escherichia coli E482




Escherichia coli BCEO19_MS-13


Escherichia coli E560




Escherichia coli BCE030_MS-09


Escherichia coli E704




Escherichia coli BCE032-DM-A


Escherichia coli E74/68




Escherichia coli BCE032-DM-B


Escherichia coli E851/71




Escherichia coli BCE032-DM-B-A


Escherichia coli Ec 1 1-9450




Escherichia coli BCE032-DM-B-B


Escherichia coli Ec 11-9941




Escherichia coli BCE032 MS-12


Escherichia coli Ec 11-9990




Escherichia coli BCE034 MS-14


Escherichia coli EC096/10




Escherichia coli Bd5610_99


Escherichia coli Eel 1-4986




Escherichia coli B1DMC 15


Escherichia coli ECT734




Escherichia coli BIDMC 17A


Escherichia coli EC1735




Escherichia coli BIDMC 17B


Escherichia coli EC1736




Escherichia coli BIDMC 19A


Escherichia coli EC1737




Escherichia coli BIDMC 19B


Escherichia coli EC 1738




Escherichia coli BIDMC 19C


Escherichia coli EC1845




Escherichia coli BIDMC 20A


Escherichia coli EC 1846




Escherichia coli BIDMC 20B


Escherichia coli EC 1847




Escherichia coli BIDMC 2B


Escherichia coli EC 1848




Escherichia coli BIDMC 3


Escherichia coli EC 1849




Escherichia coli BIDMC 37


Escherichia coli EC1850




Escherichia coli BIDMC 38


Escherichia coli EC1856




Escherichia coli EC 1862


Escherichia coli FR1K920




Escherichia coli EC 1863


Escherichia coli FVEC1302




Escherichia coli EC 1864


Escherichia coli FVEC1412




Escherichia coli EC 1865


Escherichia coli FVEC1465




Escherichia coli EC 1866


Escherichia coli G5101




Escherichia coli EC 1868


Escherichia coli G58-1




Escherichia coli EC 1869


Escherichia coli GEMS_EPEC1




Escherichia coli EC 1870


Escherichia coli H001




Escherichia coli EC302/04


Escherichia coli H120




Escherichia coli EC4013


Escherichia coli H16




Escherichia coli EC4100B


Escherichia coli H185




Escherichia coli EC4196


Escherichia coli H218




Escherichia coli EC4203


Escherichia coli H220




Escherichia coli EC4402


Escherichia coli H223




Escherichia coli EC4421


Escherichia coli H252




Escherichia coli EC4422


Escherichia coli H260




Escherichia coli EC4436


Escherichia coli C87_11




Escherichia coli EC4437


Escherichia coli C887_10




Escherichia coli EC4439


Escherichia coli C900_01




Escherichia coli EC4448


Escherichia coli C93_11




Escherichia coli EC96038


Escherichia coli C9_92




Escherichia coli ECA-0157


Escherichia coli CB7326




Escherichia coli ECA-727


Escherichia coli B15




Escherichia coli ECC-1470


Escherichia coli B17




Escherichia coli ECC-7


Escherichia coli B171




Escherichia coli EcN DM1


Escherichia coli B175




Escherichia coli ED la


Escherichia coli CE418




Escherichia coli EDM 106


Escherichia coli CE516




Escherichia coli EDM 116


Escherichia coli CE549




Escherichia coli EDM530


Escherichia coli CFT073




Escherichia coli Envira 10/1


Escherichia coli chi7122




Escherichia coli Envira 8/11


Escherichia coli cloneA_il




Escherichia coli EPEC 32/73


Escherichia coli Combat2D2




Escherichia coli EPEC C342-62


Escherichia coli CTJMT8




Escherichia coli EPEC 11


Escherichia coli D-04_27




Escherichia coli EPECa12


Escherichia coli DEC10A




Escherichia coli EPECa14


Escherichia coli DEC 10B




Escherichia coli ER2796


Escherichia coli DEC10C




Escherichia coli ES699


Escherichia coli DEC10D




Escherichia coli ETEC 1392/75


Escherichia coli DEC10E




Escherichia coli ETEC DS168-1


Escherichia coli DEC 1 OF




Escherichia coli ETEC HI0407


Escherichia coli DEC11A




Escherichia coli H10407_1968


Escherichia coli DEC11B




Escherichia coli HI0407_1970


Escherichia coli DEC11C




Escherichia coli ETEC TW03439


Escherichia coli DEC11D




Escherichia coli ETEC TW03452


Escherichia coli DEC11E




Escherichia coli ETEC TW03574


Escherichia coli DEC12A




Escherichia coli ETEC TW03576


Escherichia coli DEC12B




Escherichia coli ETEC TW03585


Escherichia coli DEC12C




Escherichia coli ETEC TW03741


Escherichia coli DEC12D




Escherichia coli ETEC TW 14691


Escherichia coli DEC12E




Escherichia coli ETEC WS1896A


Escherichia coli DEC13A




Escherichia coli ETEC WS2068A


Escherichia coli DEC13B




Escherichia coli ETEC WS3080A


Escherichia coli DEC13C




Escherichia coli F11


Escherichia coli DEC13D




Escherichia coli F18+


Escherichia coli DEC13E




Escherichia coli F576


Escherichia coli DEC14A




Escherichia coli FDA504


Escherichia coli DEC14B




Escherichia coli FDA505


Escherichia coli DEC14C




Escherichia coli FDA506


Escherichia coli DEC14D




Escherichia coli FDA507


Escherichia coli DEC15A




Escherichia coli FDA517


Escherichia coli DEC15B




Escherichia coli FREP


Escherichia coli DECT5C




Escherichia coli FRIK1985


Escherichia coli DEC15D




Escherichia coli FRIK1990


Escherichia coli DEC15E




Escherichia coli FRIK1996


Escherichia coli DEC1A




Escherichia coli FRIK1997


Escherichia coli DECTB




Escherichia coli FRIK1999


Escherichia coli DEC1C




Escherichia coli FRIK2001


Escherichia coli DEC ID




Escherichia coli FRIK523


Escherichia coli DEC1E




Escherichia coli DEC2A


Escherichia coli HVH 223 (4-2976528)




Escherichia coli DEC2B


Escherichia coli HVH 225 (4-1273116)




Escherichia coli DEC2C


Escherichia coli HVH 227 (4-2277670)




Escherichia coli DEC2D


Escherichia coli HVH 228 (4-7787030)




Escherichia coli DEC2E


Escherichia coli HVH 23 (4-6066488)




Escherichia coli DEC3A


Escherichia coli HVH 24 (4-5985145)




Escherichia coli DEC3B


Escherichia coli IIVII 25 (4-5851939)




Escherichia coli DEC3C


Escherichia coli HVH 26 (4-5703913)




Escherichia coli DEC3D


Escherichia coli HVH 27 (4-7449267)




Escherichia coli DEC3E


Escherichia coli HVH 28 (4-0907367)




Escherichia coli DEC3F


Escherichia coli HVH 29 (4-3418073)




Escherichia coli DEC4A


Escherichia coli HVH 3 (4-7276001)




Escherichia coli DEC4B


Escherichia coli HVH 30 (4-2661829)




Escherichia coli DEC4C


Escherichia coli HVH 31 (4-2602156)




Escherichia coli DEC4D


Escherichia coli HVH 32 (4-3773988)




Escherichia coli DEC4E


Escherichia coli HVH 33 (4-2174936)




Escherichia coli DEC4F


Escherichia coli HVH 35 (4-2962667)




Escherichia coli DEC5A


Escherichia coli HVH 36 (4-5675286)




Escherichia coli DEC5B


Escherichia coli HVH 37 (4-2773848)




Escherichia coli DEC5C


Escherichia coli HVH 38 (4-2774682)




Escherichia coli DEC5D


Escherichia coli HVH 39 (4-2679949)




Escherichia coli DEC5E


Escherichia coli HVH 4 (4-7276109)




Escherichia coli DEC6A


Escherichia coli HVH 40 (4-1219782)




Escherichia coli DEC6B


Escherichia coli HVH 41 (4-2677849)




Escherichia coli DEC6C


Escherichia coli HVH 42 (4-21 00061)




Escherichia coli DEC6D


Escherichia coli HVH 43 (4-2173468)




Escherichia coli DEC6E


Escherichia coli HVH 44 (4-2298570)




Escherichia coli DEC7A


Escherichia coli HVH 45 (4-3129918)




Escherichia coli DEC7B


Escherichia coli HVH 46 (4-2758776)




Escherichia coli DEC7C


Escherichia coli HVH 48 (4-2658593)




Escherichia coli DEC7D


Escherichia coli HVH 5 (4-7148410)




Escherichia coli DEC7E


Escherichia coli HVH 50 (4-2593475)




Escherichia coli DEC8A


Escherichia coli HVH 51 (4-2172526)




Escherichia coli DEC8B


Escherichia coli HVH 53 (4-0631051)




Escherichia coli DEC8C


Escherichia coli HVH 54 (4-2723514)




Escherichia coli DEC8D


Escherichia coli IIVII 55 (4-2646161)




Escherichia coli DEC8E


Escherichia coli HVH 56 (4-2153033)




Escherichia coli DEC9A


Escherichia coli HVH 58 (4-2839709)




Escherichia coli DEC9B


Escherichia coli HVH 59 (4-1119338)




Escherichia coli DEC9C


Escherichia coli IIVII 6 (3-8296502)




Escherichia coli DEC9D


Escherichia coli HVH 61 (4-2736020)




Escherichia coli DEC9E


Escherichia coli HVH 63 (4-2542528)




Escherichia coli DH1


Escherichia coli HVH 65 (4-2262045)




Escherichia coli HVH 199 (4-5670322)


Escherichia coli HVH 68 (4-0888028)




Escherichia coli HVH 2 (4-6943160)


Escherichia coli HVH 69 (4-2837072)




Escherichia coli HVH 20 (4-5865042)


Escherichia coli HVH 7 (4-7315031)




Escherichia coli HVH 200 (4-4449924)


Escherichia coli HVH 70 (4-2963531)




Escherichia coli HVH 201 (4-4459431)


Escherichia coli HVH 73 (4-2393174)




Escherichia coli HVH 202 (4-3163997)


Escherichia coli HVH 74 (4-1034782)




Escherichia coli HVH 203 (4-3126218)


Escherichia coli HVH 76 (4-2538717)




Escherichia coli HVH 204 (4-3112802)


Escherichia coli HVH 77 (4-2605759)




Escherichia coli HVH 205 (4-3094677)


Escherichia coli HVH 78 (4-2735946)




Escherichia coli HVH 206 (4-3128229)


Escherichia coli HVH 79 (4-2512823)




Escherichia coli HVH 207 (4-3113221)


Escherichia coli HVH 80 (4-2428830)




Escherichia coli HVH 208 (4-3112292)


Escherichia coli HVH 82 (4-2209276)




Escherichia coli HVH 209 (4-3062651)


Escherichia coli HVH 83 (4-2051087)




Escherichia coli HVH 21 (4-4517873)


Escherichia coli HVH 84 (4-1021478)




Escherichia coli HVH 21 0 (4-3042480)


Escherichia coli HVH 85 (4-0792144)




Escherichia coli HVH 211 (4-3041891)


Escherichia coli HVH 86 (4-7026218)




Escherichia coli HVH 212 (3-9305343)


Escherichia coli HVH 87 (4-5977630)




Escherichia coli HVH 213 (4-3042928)


Escherichia coli HVH 88 (4-5854636)




Escherichia coli HVH 214 (4-3062198)


Escherichia coli HVH 89 (4-5885604)




Escherichia coli HVH 215 (4-3008371)


Escherichia coli HVH 9 (4-6942539)




Escherichia coli HVH 216 (4-3042952)


Escherichia coli HVH 90 (4-3191362)




Escherichia coli HVH 217 (4-1022806)


Escherichia coli HVH 91 (4-4638751)




Escherichia coli HVH 218 (4-4500903)


Escherichia coli HVH 92 (4-5930790)




Escherichia coli HVH 22 (4-2258986)


Escherichia coli HVH 93 (4-5851025)




Escherichia coli HVH 220 (4-5876842)


Escherichia coli HVH 95 (4-6074464)




Escherichia coli IIVII 221 (4-3136817)


Escherichia coli IIVII 96 (4-5934869)




Escherichia coli HVH 222 (4-2977443)


Escherichia coli HVH 97 (4-6859038)




Escherichia coli HVH 98 (4-5799287)


Escherichia coli KTE115




Escherichia coli HVH 99 (4-6745172)


Escherichia coli KTE116




Escherichia coli IAI1


Escherichia coli KTE117




Escherichia coli IAI39


Escherichia coli KTE118




Escherichia coli IHE3034


Escherichia coli KTE119




Escherichia coli IMT8073


Escherichia coli KTE12




Escherichia coli J53


Escherichia coli KTE120




Escherichia coli J96


Escherichia coli KTE121




Escherichia coli JB1-95


Escherichia coli KTE122




Escherichia coli JC2722


Escherichia coli KTE123




Escherichia coli JC5048


Escherichia coli KTE124




Escherichia coli JCL16


Escherichia coli KTE125




Escherichia coli JCMA


Escherichia coli KTE126




Escherichia coli Jurua 18/11


Escherichia coli KTE127




Escherichia coli Jurua 20/10


Escherichia coli KTE128




Escherichia coli K-12


Escherichia coli KTE129




Escherichia coli BW25113


Escherichia coli KTE13




Escherichia coli BW2952


Escherichia coli KTE130




Escherichia coli BW38028


Escherichia coli KTE131




Escherichia coli LW1655F+


Escherichia coli KTE132




Escherichia coli MC1061


Escherichia coli KTEI33




Escherichia coli NC-7


Escherichia coli KTE134




Escherichia coli str. K-12 substr. DH10B


Escherichia coli KTE135




Escherichia coli str. K-12 substr. MDS42


Escherichia coli KTE136




Escherichia coli str. K-12 substr. MG1655


Escherichia coli KTEI37




Escherichia coli str. K-12 substr. W3110


Escherichia coli KTE138




Escherichia coli Kl


Escherichia coli KTE139




Escherichia coli K2


Escherichia coli KTE14




Escherichia coli K71


Escherichia coli KTE140




Escherichia coli KD1


Escherichia coli KTE141




Escherichia coli KD2


Escherichia coli KTE142




Escherichia coli KO11FL


Escherichia coli KTE143




Escherichia coli KOEGE 10 (25a)


Escherichia coli KTE144




Escherichia coli KOEGE 118 (317a)


Escherichia coli KTE145




Escherichia coli KOEGE 131 (358a)


Escherichia coli KTE146




Escherichia coli KOEGE 3 (4a)


Escherichia coli KTE147




Escherichia coli KOEGE 30 (63a)


Escherichia coli KTE148




Escherichia coli KOEGE 32 (66a)


Escherichia coli KTE149




Escherichia coli KOEGE 33 (68a)


Escherichia coli KTE15




Escherichia coli KOEGE 40 (102a)


Escherichia coli KTE150




Escherichia coli KOEGE 43 (105a)


Escherichia coli KTE153




Escherichia coli KOEGE 44 (106a)


Escherichia coli KTE154




Escherichia coli KOEGE 56 (169a)


Escherichia coli KTE155




Escherichia coli KOEGE 58 (171a)


Escherichia coli KTE156




Escherichia coli KOEGE 61 (174a)


Escherichia coli KTE157




Escherichia coli KOEGE 62 (175a)


Escherichia coli KTE158




Escherichia coli KOEGE 68 (182a)


Escherichia coli KTE159




Escherichia coli KOEGE 7 (16a)


Escherichia coli KTE16




Escherichia coli KOEGE 70 (185a)


Escherichia coli KTE160




Escherichia coli KOEGE 71 (186a)


Escherichia coli KTE161




Escherichia coli KOEGE 73 (195a)


Escherichia coli KTE162




Escherichia coli KOEGE 77 (202a)


Escherichia coli KTE163




Escherichia coli KTE1


Escherichia coli KTE165




Escherichia coli KTE10


Escherichia coli KTE166




Escherichia coli KTE100


Escherichia coli KTE167




Escherichia coli KTE101


Escherichia coli KTE168




Escherichia coli KTE102


Escherichia coli KTE169




Escherichia coli KTE1 03


Escherichia coli KTE1 7




Escherichia coli KTE104


Escherichia coli KTE170




Escherichia coli KTE105


Escherichia coli KTE171




Escherichia coli KTE106


Escherichia coli KTE172




Escherichia coli KTE107


Escherichia coli KTE173




Escherichia coli KTE108


Escherichia coli KTE174




Escherichia coli KTE109


Escherichia coli KTE175




Escherichia coli KTE11


Escherichia coli KTE176




Escherichia coli KTE110


Escherichia coli KTE177




Escherichia coli KTE111


Escherichia coli KTE178




Escherichia coli KTE112


Escherichia coli KTE179




Escherichia coli KTE113


Escherichia coli KTE18




Escherichia coli KTE114


Escherichia coli KTE180




Escherichia coli KTE181


Escherichia coli H489




Escherichia coli KTE182


Escherichia coli H494




Escherichia coli KTE183


Escherichia coli H504




Escherichia coli KTE184


Escherichia coli H588




Escherichia coli KTE185


Escherichia coli H591




Escherichia coli KTE186


Escherichia coli H593




Escherichia coli KTE187


Escherichia coli II605




Escherichia coli KTE188


Escherichia coli H617




Escherichia coli KTE189


Escherichia coli H660




Escherichia coli KTE19


Escherichia coli H730




Escherichia coli KTE190


Escherichia coli H736




Escherichia coli KTE191


Escherichia coli HB101




Escherichia coli KTE192


Escherichia coli HM26




Escherichia coli KTE193


Escherichia coli HM27




Escherichia coli KTE194


Escherichia coli HM46




Escherichia coli KTE195


Escherichia coli HM605




Escherichia coli KTE196


Escherichia coli HM65




Escherichia coli KTE197


Escherichia coli HM69




Escherichia coli KTE198


Escherichia coli HP20A2007




Escherichia coli KTE199


Escherichia coli HUSEC41




Escherichia coli KTE2


Escherichia coli HVH 1 (4-6876161)




Escherichia coli KTE20


Escherichia coli HVH 10 (4-6832164)




Escherichia coli KTE200


Escherichia coli HVH 100 (4-2850729)




Escherichia coli KTE201


Escherichia coli HVH 101 (4-6859844)




Escherichia coli KTE202


Escherichia coli HVH 102 (4-6906788)




Escherichia coli KTE203


Escherichia coli HVH 103 (4-5904188)




Escherichia coli KTE204


Escherichia coli HVH 104 (4-6977960)




Escherichia coli KTE205


Escherichia coli HVH 105 (4-6748473)




Escherichia coli KTE206


Escherichia coli HVH 106 (4-6881831)




Escherichia coli KTE207


Escherichia coli HVH 107 (4-5860571)




Escherichia coli KTE208


Escherichia coli HVH 108 (4-6924867)




Escherichia coli KTE209


Escherichia coli HVH 109 (4-6977162)




Escherichia coli KTE21


Escherichia coli HVH 110 (4-6978754)




Escherichia coli KTE210


Escherichia coli HVH 111 (4-7039018)




Escherichia coli KTE211


Escherichia coli HVH 112 (4-5987253)




Escherichia coli KTE212


Escherichia coli HVH 113 (4-7535473)




Escherichia coli KTE213


Escherichia coli HVH 114 (4-7037740)




Escherichia coli KTE214


Escherichia coli HVH 115 (4-4465989)




Escherichia coli KTE215


Escherichia coli HVH 115 (4-4465997)




Escherichia coli KTE216


Escherichia coli HVH 116 (4-6879942)




Escherichia coli KTE217


Escherichia coli HVH 117 (4-6857191)




Escherichia coli KTE218


Escherichia coli HVH 118 (4-7345399)




Escherichia coli KTE219


Escherichia coli HVH 119 (4-6879578)




Escherichia coli KTE22


Escherichia coli HVH 12 (4-7653042)




Escherichia coli KTE220


Escherichia coli HVH 120 (4-6978681)




Escherichia coli KTE221


Escherichia coli HVH 121 (4-6877826)




Escherichia coli KTE222


Escherichia coli HVH 122 (4-6851606)




Escherichia coli KTE223


Escherichia coli HVH 125 (4-2634716)




Escherichia coli KTE224


Escherichia coli HVH 126 (4-6034225)




Escherichia coli KTE225


Escherichia coli HVH 127 (4-7303629)




Escherichia coli KTE226


Escherichia coli HVH 128 (4-7030436)




Escherichia coli KTE227


Escherichia coli HVH 13 (4-7634056)




Escherichia coli KTE228


Escherichia coli HVH 130 (4-7036876)




Escherichia coli KTE229


Escherichia coli HVH 132(4-6876862)




Escherichia coli KTE23


Escherichia coli HVH 133 (4-4466519)




Escherichia coli H263


Escherichia coli HVH 134 (4-6073441)




Escherichia coli H288


Escherichia coli HVH 135 (4-4449320)




Escherichia coli H296


Escherichia coli HVH 136(4-5970458)




Escherichia coli H299


Escherichia coli HVH 137 (4-2124971)




Escherichia coli H30


Escherichia coli HVH 138 (4-6066704)




Escherichia coli H305


Escherichia coli HVH 139 (4-3192644)




Escherichia coli H378


Escherichia coli HVH 140(4-5894387)




Escherichia coli H383


Escherichia coli HVH 141 (4-5995973)




Escherichia coli H3 86


Escherichia coli HVH 142 (4-5627451)




Escherichia coli H397


Escherichia coli HVH 143 (4-5674999)




Escherichia coli H413


Escherichia coli HVH 144 (4-4451937)




Escherichia coli H420


Escherichia coli HVH 145 (4-5672112)




Escherichia coli H442


Escherichia coli HVH 146 (4-3189767)




Escherichia coli II454


Escherichia coli HVH 147 (4-5893887)




Escherichia coli H461


Escherichia coli HVH 148 (4-3192490)




Escherichia coli HVH 149 (4-4451880)


Escherichia coli MP021552.12




Escherichia coli HVH 150 (4-3258106)


Escherichia coli MP021552.7




Escherichia coli HVH 151 (4-5755573)


Escherichia coli MP021552.8




Escherichia coli HVH 152 (4-3447545)


Escherichia coli MP021561.2




Escherichia coli HVH 153 (3-9344314)


Escherichia coli MP021561.3




Escherichia coli HVH 154 (4-5636698)


Escherichia coli MP021566.1




Escherichia coli IIVII 155 (4-4509048)


Escherichia coli MP 1




Escherichia coli HVH 156 (4-3206505)


Escherichia coli MS 107-1




Escherichia coli HVH 157 (4-3406229)


Escherichia coli MS 110-3




Escherichia coli HVH 158 (4-3224287)


Escherichia coli MS 115-1




Escherichia coli HVH 159 (4-5818141)


Escherichia coli MS 116-1




Escherichia coli HVH 16 (4-7649002)


Escherichia coli MS 117-3




Escherichia coli HVH 160 (4-5695937)


Escherichia coli MS 119-7




Escherichia coli HVH 161 (4-3119890)


Escherichia coli MS 124-1




Escherichia coli HVH 162 (4-5627982)


Escherichia coli MS 145-7




Escherichia coli HVH 163 (4-4697553)


Escherichia coli MS 146-1




Escherichia coli HVH 164 (4-5953081)


Escherichia coli MS 153-1




Escherichia coli HVH 167 (4-6073565)


Escherichia coli MS 16-3




Escherichia coli HVH 169 (4-1075578)


Escherichia coli MS 175-1




Escherichia coli HVH 17 (4-7473087)


Escherichia coli MS 182-1




Escherichia coli HVH 170 (4-3026949)


Escherichia coli MS 185-1




Escherichia coli HVH 171 (4-3191958)


Escherichia coli MS 187-1




Escherichia coli HVH 172 (4-3248542)


Escherichia coli MS 196-1




Escherichia coli HVH 173 (3-9175482)


Escherichia coli MS 198-1




Escherichia coli HVH 175 (4-3405184)


Escherichia coli MS 200-1




Escherichia coli HVH 176 (4-3428664)


Escherichia coli MS 21-1




Escherichia coli HVH 177 (4-2876612)


Escherichia coli MS 45-1




Escherichia coli HVH 178 (4-3189163)


Escherichia coli MS 57-2




Escherichia coli HVH 18 (4-8589585)


Escherichia coli MS 60-1




Escherichia coli HVH 180 (4-3051617)


Escherichia coli MS 69-1




Escherichia coli HVH 182 (4-0985554)


Escherichia coli MS 78-1




Escherichia coli HVH 183 (4-3205932)


Escherichia coli MS 79-10




Escherichia coli HVH 184 (4-3343286)


Escherichia coli MS 84-1




Escherichia coli HVH 185 (4-2876639)


Escherichia coli MS 85-1




Escherichia coli HVH 186 (4-3405044)


Escherichia coli N1




Escherichia coli IIVII 187 (4-4471660)


Escherichia coli NA114




Escherichia coli HVH 188 (4-2356988)


Escherichia coli NC101




Escherichia coli HVH 189 (4-3220125)


Escherichia coli NCCP 15653




Escherichia coli HVH 19 (4-7154984)


Escherichia coli NCCP 15655




Escherichia coli IIVII 190 (4-3255514)


Escherichia coli NCCP 15656




Escherichia coli HVH 191 (3-9341900)


Escherichia coli NCCP15647




Escherichia coli HVH 192 (4-3054470)


Escherichia coli NCCP 15648




Escherichia coli HVH 193 (4-3331423)


Escherichia coli NCCP 15657




Escherichia coli HVH 194 (4-2356805)


Escherichia coli NCCP 15658




Escherichia coli HVH 195 (3-7155360)


Escherichia coli NCTC 86




Escherichia coli HVH 196 (4-4530470)


Escherichia coli NDMlDok01




Escherichia coli HVH 197 (4-4466217)


Escherichia coli NE037




Escherichia coli HVH 198 (4-3206106)


Escherichia coli NE098




Escherichia coli MA6


Escherichia coli NE1487




Escherichia coli MCI9


Escherichia coli Nissle 1917




Escherichia coli MC21


Escherichia coli NT:H19




Escherichia coli MC23


Escherichia coli NT:H40




Escherichia coli MC6002


Escherichia coli NU14




Escherichia coli MC6003


Escherichia coli O08




Escherichia coli MG1657


Escherichia coli O10




Escherichia coli MGR194


Escherichia coli O10 str. Bi8337-41




Escherichia coli MP020940.1


Escherichia coli O10EH33




Escherichia coli MP020980.1


Escherichia coli O103




Escherichia coli MP020980.2


Escherichia coli O103 str. RM10042




Escherichia coli MP021017.1


Escherichia coli O103 str. RM8385




Escherichia coli MP021017.10


Escherichia coli O103:H2




Escherichia coli MP021017.il


Escherichia coli E22




Escherichia coli MP021017.12


Escherichia coli O103:H2 str. 12009




Escherichia coli MP021017.2


Escherichia coli O103:H2 str. CVM9450




Escherichia coli MP021017.3


Escherichia coli O103:H25




Escherichia coli MP021017.4


Escherichia coli O103:H25 str. 6582




Escherichia coli MP021017.5


Escherichia coli O103:H25 str. CVM9340




Escherichia coli MP021017.6


Escherichia coli O103:H25 sir. NIPH-11060424




Escherichia coli MP021017.9


Escherichia coli O103:IINM




Escherichia coli MP021552.11


Escherichia coli O103:K+




Escherichia coii O104:H12


Escherichia coli O109:H9




Escherichia coli O104:H21


Escherichia coli O10:K5(L):H4




Escherichia coli O104:H21 str. CFSAN002236


Escherichia coli O10:K5(L):H4 str. ATCC 23506




Escherichia coli O104:H21 str. CFSAN002237


Escherichia coli O11




Escherichia coli O104:H4


Escherichia coli O11 str. Bi632-42




Escherichia coli O104:H4 str. 01-09591


Escherichia coli O11 1




Escherichia coli O104:114 str. 04-8351


Escherichia coli O11 1 str. RM9322




Escherichia coli O104:H4 str. 09-7901


Escherichia coli O111:B4




Escherichia coli O104:H4 str. 11-02030


Escherichia coli O111:H−




Escherichia coli O104:H4 str. 11-02033-1


Escherichia coli O111:H− str. 11128




Escherichia coli O104:H4 str. 11-02092


Escherichia coli O111:H11




Escherichia coli O104:H4 str. 11-02093


Escherichia coli O111:H11 str. CFSAN001630




Escherichia coli O104:H4 str. 11-02281


Escherichia coli O111H11 str. CVM9455




Escherichia coli O104:H4 str. 11-02318


Escherichia coli O111:H11 str. CVM9534




Escherichia coli O104:H4 str. 11-02913


Escherichia coli O111:H11 str. CVM9545




Escherichia coli O104:H4 sir. 11-03439


Escherichia coli O111:H11 sir. CVM9553




Escherichia coli O104:H4 str. 11-03943


Escherichia coli O111:H19




Escherichia coli O104:H4 str. 11-04080


Escherichia coli O111:H2




Escherichia coli O104:H4 str. 11-3677


Escherichia coli O111:H21




Escherichia coli O104:H4 str. 11-3798


Escherichia coli O111:H21 str. 226




Escherichia coli O1 04:H4 str. 11-4404


Escherichia coli O111:H8




Escherichia coli O104:H4 str. 11-4522


Escherichia coli O111:H8 str. 1074




Escherichia coli O104:H4 str. 11-4623


Escherichia coli O111:H8 str. 9662




Escherichia coli O104:H4 str. 11-4632 CI


Escherichia coli O111:H8 str. CFSAN001632




Escherichia coli O104:H4 str. 1 1-4632 C2


Escherichia coli O111:H8 str. CVM9570




Escherichia coli O104:H4 str. 11-4632 C3


Escherichia coli O111:H8 str. CVM9574




Escherichia coli O104:H4 str. 11-4632 C4


Escherichia coli O111:H8 str. CVM9602




Escherichia coli O104:H4 str. 11-4632 C5


Escherichia coli O111:H8 str. CVM9634




Escherichia coli O104:H4 str. 2009EL-2050


Escherichia coli O111:NM




Escherichia coli O104:H4 str. 2009EL-2071


Escherichia coli O113




Escherichia coli O104:H4 str. 2011C-3493


Escherichia coli O113:H19




Escherichia coli O104:H4 str. C227-11


Escherichia coli O113:H21




Escherichia coli O104:H4 str. C236-11


Escherichia coli O113:H21 str. CL-3




Escherichia coli O104:H4 str. C237-11


Escherichia coli O115:H−




Escherichia coli O104:H4 str. E101/11


Escherichia coli O115:HMN




Escherichia coli O104:114 str. E103/11


Escherichia coli O115:K+




Escherichia coli O104:H4 str. E107/11


Escherichia coli O117:Kl:H7




Escherichia coli O104:H4 str. El 12/10


Escherichia coli O119:H6




Escherichia coli O104:H4 str. E83/11


Escherichia coli O119:UT




Escherichia coli O104:114 str. E84/11


Escherichia coli O120:IINM




Escherichia coli O104:H4 str. E90/11


Escherichia coli O121




Escherichia coli O104:H4 str. E92/11


Escherichia coli O121 str. RM8352




Escherichia coli O104:H4 str. E94/11


Escherichia coli O12EH19




Escherichia coli O104:H4 str. Eel 1-4984


Escherichia coli O12EH19 str. 9918




Escherichia coli O104:H4 str. Eel 1-4986


Escherichia coli O12EH19 str. MT#2




Escherichia coli O104:H4 str. Eel 1-4987


Escherichia coli O12EH46




Escherichia coli O104:H4 str. Eel 1-4988


Escherichia coli O124:H−




Escherichia coli O104:H4 str. Eel 1-5536


Escherichia coli O124:H40




Escherichia coli O104:H4 str. Eel 1-5537


Escherichia coli O126:H27




Escherichia coli O104:H4 str. Eel 1-5538


Escherichia coli O127:B8




Escherichia coli O104:H4 str. Eel 1-5603


Escherichia coli O127:H21




Escherichia coli O104:H4 str. Eel 1-5604


Escherichia coli O127:H27




Escherichia coli O104:H4 str. Eel 1-6006


Escherichia coli O127:H27 str. C43/90




Escherichia coli O104:Ft4 str. Eel 1 -9450


Escherichia coli O127:H6




Escherichia coli O104:H4 str. Eel 1-9941


Escherichia coli O127:H6 str. E2348/69




Escherichia coli O104:H4 str. Eel 1-9990


Escherichia coli O127a:H6




Escherichia coli O104:H4 str. Eel2-0465


Escherichia coli O128:H2




Escherichia coli O104:H4 str. Eel 2-0466


Escherichia coli O131:H25




Escherichia coli O104:H4 str. GOS1


Escherichia coli O136:H−




Escherichia coli O104:H4 sir. GOS2


Escherichia coli O138:NM




Escherichia coli O104:H4 str. HI 12180280


Escherichia coli O138:H11




Escherichia coli O104:H4 str. HI 12180282


Escherichia coli O142:H6




Escherichia coli O104:H4 str. HI 12180283


Escherichia coli O145




Escherichia coli O104:H4 str. HI 12180540


Escherichia coli O145 str. RM9872




Escherichia coli O104:H4 str. HI 12180541


Escherichia coli O145:H−




Escherichia coli O104:H4 str. LB226692


Escherichia coli O145:H28




Escherichia coli O104:H4 str. ON2010


Escherichia coli O145:H28 str. 4865/96




Escherichia coli O104:H4 str. ON2011


Escherichia coli O145:H28 str. RM12581




Escherichia coli O104:114 str. TY-2482


Escherichia coli O145:1128 str. RM12761




Escherichia coli O108:H25


Escherichia coli O145:H28 str. RM13514




Escherichia coli O145:H28 str. RM13516


Escherichia coli O157:H7 str. Sakai




Escherichia coli O145:NM


Escherichia coli O157:H7 str. SS17




Escherichia coli O145:NM str. 2012C-4474


Escherichia coli O157:H7 str. SS52




Escherichia coli O145:NM str. 2012C-4477


Escherichia coli O157:H7 str. TW14359




Escherichia coli O145:NM str. 2012C-4478


Escherichia coli O157:H7 str. TW14588




Escherichia coli O145:NM str. 2012C-4479


Escherichia coli O157:H7 str. ZAP430




Escherichia coli O145:NM str. 2012C-4480


Escherichia coli O157:119




Escherichia coli O145:NM str. 8235


Escherichia coli O157:HNM




Escherichia coli O149:H10


Escherichia coli O157:NM




Escherichia coli O153:H21


Escherichia coli O15:H34




Escherichia coli O153:H7


Escherichia coli O15:NM




Escherichia coli O154:H9


Escherichia coli O16




Escherichia coli O157


Escherichia coli O16 str. Fill 19-41




Escherichia coli 3.4880


Escherichia coli O169:H−




Escherichia coli 7.1982


Escherichia coli O17




Escherichia coli 95.0083


Escherichia coli O17 str. K12a




Escherichia coli ATCC 700728


Escherichia coli O174:H21




Escherichia coli O157 str. NCCP15738


Escherichia coli O177:H11




Escherichia coli O157 str. NCCP15739


Escherichia coli O18




Escherichia coli PA11


Escherichia coli O18 str. F10018-41




Escherichia coli PA13


Escherichia coli O180:H−




Escherichia coli PA19


Escherichia coli O19




Escherichia coli PA35


Escherichia coli O19 str. F8188-41




Escherichia coli O157:12


Escherichia coli O20




Escherichia coli O157:H−


Escherichia coli O20 str. P7a




Escherichia coli O157:H− str. 493-89


Escherichia coli O23




Escherichia coli O157:H− str. H 2687


Escherichia coli O23 str. P7a




Escherichia coli O157:H12


Escherichia coli O25




Escherichia coli O157:H16


Escherichia coli O25 str. E39a




Escherichia coli O157:H37


Escherichia coli O25b:H4




Escherichia coli O157:H39


Escherichia coli O25b:H4-ST131 str. EC958




Escherichia coli O157:H43


Escherichia coli O25b:ST131




Escherichia coli O157:H43 str. T22


Escherichia coli O26




Escherichia coli O157:H45


Escherichia coli O26 str. RM10386




Escherichia coli O157:H7


Escherichia coli O26 str. RM8426




Escherichia coli O157:117 str. 1044


Escherichia coli O26:11−




Escherichia coli O157:H7 str. 1125


Escherichia coli O26:H11




Escherichia coli O157:H7 str. 121


Escherichia coli O26:H11 str. 10140




Escherichia coli O157:H7 str. 262


Escherichia coli O26:H11 str. 11368




Escherichia coli O157:117 str. 611


Escherichia coli O26:1111 str. 6629




Escherichia coli O157:H7 str. EC10


Escherichia coli O26:H11 str. CFSAN001629




Escherichia coli O157:H7 str. EC1212


Escherichia coli O26:H11 str−. CVM10021




Escherichia coli O157:H7 str. EC4009


Escherichia coli O26:H11 str. CVM 10026




Escherichia coli O157:H7 str. EC4024


Escherichia coli O26:H11 str. CVM10030




Escherichia coli O157:H7 str. EC4042


Escherichia coli O26:H11 sir. CVM10224




Escherichia coli O157:H7 str. EC4045


Escherichia coli O26:H11 str. CVM9942




Escherichia coli O157:H7 str. EC4076


Escherichia coli O26:H11 str. CVM9952




Escherichia coli O157:H7 str. EC4084


Escherichia coli O26:H11:K60




Escherichia coli O157:H7 str. EC4113


Escherichia coli O26:NM




Escherichia coli O157:H7 str. EC4115


Escherichia coli O27




Escherichia coli O157:H7 str. EC4127


Escherichia coli O27 str. E47a




Escherichia coli O157:H7 str. EC4191


Escherichia coli O28ac:H−




Escherichia coli O157:H7 str. EC4192


Escherichia coli O29




Escherichia coli O1 57:H7 str. EC4196


Escherichia coli O29 str. Su4338-41




Escherichia coli O157:H7 str. EC4205


Escherichia coli O30




Escherichia coli O157.−H7 str. EC4206


Escherichia coli O30 str. P2a




Escherichia coli O157:H7 str. EC4401


Escherichia coli O32:H37




Escherichia coli O1 57:H7 str. EC4486


Escherichia coli O32:H37 str. P4




Escherichia coli O157:H7 str. EC4501


Escherichia coli O33




Escherichia coli O157:−H7 str. EC508


Escherichia coli O33 str. E40




Escherichia coli O157:H7 str. EC536


Escherichia coli O34




Escherichia coli O157:H7 str. EC869


Escherichia coli O34 str. H304




Escherichia coli O157:H7 str. EDL933


Escherichia coli O41:H−




Escherichia coli O157:H7 str. F8092B


Escherichia coli O42:H37




Escherichia coli O157:H7 str. FRIK2000


Escherichia coli O44:H 18




Escherichia coli O157:F£7 str. FRIK966


Escherichia coli O42




Escherichia coli O157:H7 str. G5101


Escherichia coli O45:H2




Escherichia coli O157:H7 str. GZ-021210/cattle


Escherichia coli O45:H2 str. 03-EN-705




Escherichia coli O157:117 str. II093800014


Escherichia coli O45:NM




Escherichia coli O157:H7 str. LSU-61


Escherichia coli O45:NM str. G4




Escherichia coii O5


Escherichia coli P0298942.7




Escherichia coli O5 str. TJ1-41


Escherichia coli P0298942.8




Escherichia coli O5:K4(L):H4 str. ATCC 23502


Escherichia coli P0298942.9




Escherichia coli O51:H−


Escherichia coli P0299438.10




Escherichia coli O55:H2


Escherichia coli P0299438.11




Escherichia coli O55:H51


Escherichia coli P0299438.2




Escherichia coli O55:TI6


Escherichia coli P0299438.3




Escherichia coli O55:H7


Escherichia coli P0299438.4




Escherichia coli O55:H7 str. 3256-97


Escherichia coli P0299438.5




Escherichia coli O55:H7 str. CB9615


Escherichia coli P0299438.6




Escherichia coli O55:H7 str. RM12579


Escherichia coli P0299438.7




Escherichia coli O55:H7 str. USDA 5905


Escherichia coli P0299438.8




Escherichia coli O5:H−


Escherichia coli P0299438.9




Escherichia coli O6


Escherichia coli P0299483.1




Escherichia coli O6 str. Bi7458-41


Escherichia coli P0299483.2




Escherichia coli O63:H6


Escherichia coli P0299483.3




Escherichia coli O63:HNM


Escherichia coli P02997067.6




Escherichia coli O6:HNM


Escherichia coli P0299917.1




Escherichia coli O70:NM


Escherichia coli P0299917.10




Escherichia coli O75:H2


Escherichia coli P0299917.2




Escherichia coli O78:H9


Escherichia coli P0299917.3




Escherichia coli IMT2125


Escherichia coli P0299917.4




Escherichia coli O7:K1


Escherichia coli P0299917.5




Escherichia coli O7:K1 str. CE10


Escherichia coli P0299917.6




Escherichia coli OS


Escherichia coli P02999I7.7




Escherichia coli O8 str. G3404-41


Escherichia coli P0299917.8




Escherichia coli O83:H1


Escherichia coli P0299917.9




Escherichia coli O83:H1 str. NRG 85 7C


Escherichia coli P0301867.1




Escherichia coli O84:H−


Escherichia coli P0301867.11




Escherichia coli O86a:H34


Escherichia coli P0301867.13




Escherichia coli O86a:H40


Escherichia coli P0301867.2




Escherichia coli O9


Escherichia coli P0301867.3




Escherichia coli O9 str. Bi316-42


Escherichia coli P0301867.4




Escherichia coli O90:H8


Escherichia coli P0301867.5




Escherichia coli O91


Escherichia coli P0301867.7




Escherichia coli O91 str. RM7190


Escherichia coli P0301867.8




Escherichia coli O91:H21


Escherichia coli P0301904.3




Escherichia coli O91:H21 str. B2F1


Escherichia coli P0302293.10




Escherichia coli O9:H51


Escherichia coli P0302293.2




Escherichia coli OK1114


Escherichia coli P0302293.3




Escherichia coli OK1180


Escherichia coli P0302293.4




Escherichia coli OK1357


Escherichia coli P0302293.6




Escherichia coli ONT:H−


Escherichia coli P0302293.7




Escherichia coli ONT:H10


Escherichia coli P0302293.8




Escherichia coli ONT:H25


Escherichia coli P0302293.9




Escherichia coli ONT:H33


Escherichia coli P0302308.1




Escherichia coli ONT:H33 str. C48/93


Escherichia coli P0302308.10




Escherichia coli OP50


Escherichia coli P0302308.11




Escherichia coli Orough:H12


Escherichia coli P0302308.12




Escherichia coli Orough:H19


Escherichia coli P0302308.13




Escherichia coli Orough:H34


Escherichia coli P0302308.14




Escherichia coli Orough:H37


Escherichia coli P0302308.2




Escherichia coli Orough:H9


Escherichia coli P0302308.3




Escherichia coli OUT:HI 2


Escherichia coli P0302308.4




Escherichia coli OUT:H18


Escherichia coli P0302308.5




Escherichia coli OUT:H45


Escherichia coli P0304777.1




Escherichia coli OUT:H6


Escherichia coli P0304777.10




Escherichia coli OUT:H7


Escherichia coli P0304777.1 1




Escherichia coli OUT:HNM


Escherichia coli P0304777.12




Escherichia coli OUT:NM


Escherichia coli P0304777.13




Escherichia coli P0298942.1


Escherichia coli P0304777.14




Escherichia coli P0298942.10


Escherichia coli P0304777.15




Escherichia coli P0298942.11


Escherichia coli P0304777.2




Escherichia coli P0298942.12


Escherichia coli P0304777.3




Escherichia coli P0298942.14


Escherichia coli P0304777.4




Escherichia coli P0298942.15


Escherichia coli P0304777.5




Escherichia coli P0298942.2


Escherichia coli P0304777.7




Escherichia coli P0298942.3


Escherichia coli P0304777.8




Escherichia coli P0298942.4


Escherichia coli P0304777.9




Escherichia coli P0298942.6


Escherichia coli P0304799.3




Escherichia coli P0304816.1


Escherichia coli PA49




Escherichia coli P0304816.10


Escherichia coli PA5




Escherichia coli P0304816.11


Escherichia coli PA7




Escherichia coli P0304816.12


Escherichia coli PA8




Escherichia coli P0304816.13


Escherichia coli PA9




Escherichia coli P0304816.14


Escherichia coli PB10




Escherichia coli P0304816.15


Escherichia coli PDA1




Escherichia coli P0304816.2


Escherichia coli PBA5




Escherichia coli P0304816.3


Escherichia coli PBA9




Escherichia coli P0304816.4


Escherichia coli PBB13




Escherichia coli P0304816.5


Escherichia coli PBB4




Escherichia coli P0304816.6


Escherichia coli PBB5




Escherichia coli P0304816.7


Escherichia coli PBB6




Escherichia coli P0304816.8


Escherichia coli PBC20




Escherichia coli P0304816.9


Escherichia coli PBC22




Escherichia coli P0305260.1


Escherichia coli PBC3




Escherichia coli P0305260.10


Escherichia coli PBC6




Escherichia coli P0305260.11


Escherichia coli PBC7




Escherichia coli P0305260.12


Escherichia coli PBD1




Escherichia coli P0305260.13


Escherichia coli PBD11




Escherichia coli P0305260.1 5


Escherichia coli PBD16




Escherichia coli P0305260.2


Escherichia coli PBD19




Escherichia coli P0305260.3


Escherichia coli PBD2




Escherichia coli P0305260.4


Escherichia coli PBD20




Escherichia coli P0305260.5


Escherichia coli PBD21




Escherichia coli P0305260.6


Escherichia coli PBD22




Escherichia coli P0305260.7


Escherichia coli PBD24




Escherichia coli P0305260.8


Escherichia coli PBD3




Escherichia coli P0305260.9


Escherichia coli PBD7




Escherichia coli p0305293.1


Escherichia coli PCN009




Escherichia coli p0305293.10


Escherichia coli PCN033




Escherichia coli p0305293.11


Escherichia coli PCN042




Escherichia coli p0305293.12


Escherichia coli PCN079




Escherichia coli p0305293.13


Escherichia coli PCN097




Escherichia coli p0305293.14


Escherichia coli PMV-1




Escherichia coli p0305293.15


Escherichia coli PS




Escherichia coli p0305293.2


Escherichia coli PUTI459




Escherichia coli p0305293.3


Escherichia coli R424




Escherichia coli p0305293.4


Escherichia coli R527




Escherichia coli p0305293.5


Escherichia coli R529




Escherichia coli p0305293.6


Escherichia coli RDEC-1 (10f)




Escherichia coli p0305293.7


Escherichia coli REL606




Escherichia coli p0305293.8


Escherichia coli RN587/1




Escherichia coli p0305293.9


Escherichia coli RS218




Escherichia coli PI2b


Escherichia coli S17




Escherichia coli P4-96


Escherichia coli S88




Escherichia coli P4-NR


Escherichia coli SCD1




Escherichia coli PA 10


Escherichia coli SCD2




Escherichia coli PA 14


Escherichia coli SCI-07




Escherichia coli PA 15


Escherichia coli SE11




Escherichia coli PA2


Escherichia coli SE15




Escherichia coli PA22


Escherichia coli SEPT362




Escherichia coli PA23


Escherichia coli SEQ895




Escherichia coli PA24


Escherichia coli SMS-3-5




Escherichia coli PA25


Escherichia coli STEC_7v




Escherichia coli PA28


Escherichia coli STEC_94C




Escherichia coli PA3


Escherichia coli STEC_B2F1




Escherichia coli PA31


Escherichia coli STEC_CI 65-02




Escherichia coli PA32


Escherichia coli STEC_DG131-3




Escherichia coli PA33


Escherichia coli STEC_EH250




Escherichia coli PA34


Escherichia coli STEC_H.1.8




Escherichia coli PA38


Escherichia coli STEC_MHI813




Escherichia coli PA39


Escherichia coli STEC_031




Escherichia coli PA4


Escherichia coli STEC_SI 191




Escherichia coli PA40


Escherichia coli STHG79




Escherichia coli PA41


Escherichia coli str. ‘clone D il4’




Escherichia coli PA42


Escherichia coli str. ‘clone D i2’




Escherichia coli PA45


Escherichia coli str. Deng




Escherichia coli PA47


Escherichia coli SWW33




Escherichia coli PA48


Escherichia coli T1282_01




Escherichia coli T1840 97


Escherichia coli TW10491




Escherichia coli T234_00


Escherichia coli TW10503




Escherichia coli T408


Escherichia coli TW10509




Escherichia coli T426


Escherichia coli TW10512




Escherichia coli T924 01


Escherichia coli TW10518




Escherichia coli TA004


Escherichia coli TW10519




Escherichia coli TA007


Escherichia coli TW10523




Escherichia coli TA008


Escherichia coli TW10526




Escherichia coli TA014


Escherichia coli TW10530




Escherichia coli TA024


Escherichia coli TW10537




Escherichia coli TA054


Escherichia coli TW10545




Escherichia coli TA103


Escherichia coli TW 10547




Escherichia coli TA124


Escherichia coli TW10564




Escherichia coli TA141


Escherichia coli TW10568




Escherichia coli TA143


Escherichia coli TW 10595




Escherichia coli TA144


Escherichia coli TW10598




Escherichia coli TA155


Escherichia coli TW10619




Escherichia coli TA206


Escherichia coli TW10664




Escherichia coli TA249


Escherichia coli TW10722




Escherichia coli TA255


Escherichia coli TW10738




Escherichia coli TA271


Escherichia coli TW10742




Escherichia coli TA280


Escherichia coli TW10747




Escherichia coli TA435


Escherichia coli TW10785




Escherichia coli TA445


Escherichia coli TW10818




Escherichia coli TA447


Escherichia coli TW10828




Escherichia coli TA464


Escherichia coli TW10880




Escherichia coli ThroopD


Escherichia coli TW10894




Escherichia coli TOP2386


Escherichia coli TW10899




Escherichia coli TOP2396-1


Escherichia coli TW11039




Escherichia coli TOP2396-2


Escherichia coli TW11606




Escherichia coli TOP2396-3


Escherichia coli TW11638




Escherichia coli TOP2515


Escherichia coli TW11651




Escherichia coli TOP2522-1


Escherichia coli TW11666




Escherichia coli TOP2522-3


Escherichia coli TW11681




Escherichia coli TOP2652


Escherichia coli TW11685




Escherichia coli TOP2662-1


Escherichia coli TW11690




Escherichia coli TOP2662-2


Escherichia coli KTE230




Escherichia coli TOP2662-3


Escherichia coli KTE231




Escherichia coli TOP2662-4


Escherichia coli KTE232




Escherichia coli TOP291


Escherichia coli KTE233




Escherichia coli TOP293-1


Escherichia coli KTE234




Escherichia coli TOP293-2


Escherichia coli KTE235




Escherichia coli TOP293-3


Escherichia coli KTE236




Escherichia coli TOP293-4


Escherichia coli KTE237




Escherichia coli TOP379


Escherichia coli KTE24




Escherichia coli TOP382-1


Escherichia coli KTE240




Escherichia coli TOP382-2


Escherichia coli KTE25




Escherichia coli TOP382-3


Escherichia coli KTE26




Escherichia coli TOP498


Escherichia coli KTE27




Escherichia coli TOP550-1


Escherichia coli KTE28




Escherichia coli TOP550-2


Escherichia coli KTE29




Escherichia coli TOP550-3


Escherichia coli KTE3




Escherichia coli TOP550-4


Escherichia coli KTE31




Escherichia coli TT12B


Escherichia coli KTE33




Escherichia coli TW00353


Escherichia coli KTE34




Escherichia coli TW06591


Escherichia coli KTE35




Escherichia coli TW07509


Escherichia coli KTE36




Escherichia coli TW07793


Escherichia coli KTE37




Escherichia coli TW07945


Escherichia coli KTE38




Escherichia coli TW09098


Escherichia coli KTE39




Escherichia coli TW09109


Escherichia coli KTE4




Escherichia coli TW09195


Escherichia coli KTE40




Escherichia coli TW10119


Escherichia coli KTE41




Escherichia coli TW10245


Escherichia coli KTE42




Escherichia coli TW10246


Escherichia coli KTE43




Escherichia coli TW10470


Escherichia coli KTE44




Escherichia coli TW10481


Escherichia coli KTE45




Escherichia coli TW10483


Escherichia coli KTE46




Escherichia coli TW10484


Escherichia coli KTE47




Escherichia coli TW10485


Escherichia coli KTE48




Escherichia coli HS


Escherichia coli LT-62




Escherichia coli HT115


Escherichia coli LT-68




Escherichia coli HUSEC2001


Escherichia coli LY180




Escherichia coli HUSEO2011


Escherichia coli M056




Escherichia coli KTE52


Escherichia coli M1




Escherichia coli KTE53


Escherichia coli M10




Escherichia coli KTE54


Escherichia coli M11




Escherichia coli KTE55


Escherichia coli M114




Escherichia coli KTE56


Escherichia coli M12




Escherichia coli KTES7


Escherichia coli M13




Escherichia coli KTES8


Escherichia coli M14




Escherichia coli KTE59


Escherichia coli Ml5




Escherichia coli KTE6


Escherichia coli M16




Escherichia coli KTE60


Escherichia coli M17




Escherichia coli KTE61


Escherichia coli Ml8




Escherichia coli KTE62


Escherichia coli M19




Escherichia coli KTE63


Escherichia coli M2




Escherichia coli KTE64


Escherichia coli M20




Escherichia coli KTE65


Escherichia coli M21




Escherichia coli KTE66


Escherichia coli M22




Escherichia coli KTE67


Escherichia coli M23




Escherichia coli KTE68


Escherichia coli M3




Escherichia coli KTE69


Escherichia coli M4




Escherichia coli KTE7


Escherichia coli M5




Escherichia coli KTE70


Escherichia coli M6




Escherichia coli KTE71


Escherichia coli M605




Escherichia coli KTE72


Escherichia coli M646




Escherichia coli KTE73


Escherichia coli M7




Escherichia coli KTE74


Escherichia coli M718




Escherichia coli KTE75


Escherichia coli M8




Escherichia coli KTE76


Escherichia coli M863




Escherichia coli KTE77


Escherichia coli M9




Escherichia coli KTE78


Escherichia coli M919




Escherichia coli KTE79


Escherichia coli UMEA 3687-1




Escherichia coli KTE8


Escherichia coli UMEA 3693-1




Escherichia coli KTE80


Escherichia coli UMEA 3694-1




Escherichia coli KTE81


Escherichia coli UMEA 3702-1




Escherichia coli KTE82


Escherichia coli UMEA 3703-1




Escherichia coli KTE83


Escherichia coli UMEA 3705-1




Escherichia coli KTE84


Escherichia coli UMEA 3707-1




Escherichia coli KTE85


Escherichia coli UMEA 3718-1




Escherichia coli KTE86


Escherichia coli UMEA 3805-1




Escherichia coli KTE87


Escherichia coli UMEA 3821-1




Escherichia coli KTE88


Escherichia coli UMEA 3834-1




Escherichia coli KTE89


Escherichia coli UMEA 3889-1




Escherichia coli KTE9


Escherichia coli UMEA 3893-1




Escherichia coli KTE90


Escherichia coli UMEA 3899-1




Escherichia coli KTE91


Escherichia coli UMEA 3955-1




Escherichia coli KTE93


Escherichia coli UMEA 4075-1




Escherichia coli KTE94


Escherichia coli CTMEA 4076-1




Escherichia coli KTE95


Escherichia coli UMEA 4207-1




Escherichia coli KTE96


Escherichia coli UMN026




Escherichia coli KTE97


Escherichia coli UMNF18




Escherichia coli KTE98


Escherichia coli LTMNK88




Escherichia coli KTE99


Escherichia coli UTI89




Escherichia coli LAU-EC1


Escherichia coli VDP




Escherichia coli LAU-EC10


Escherichia coli Vir68




Escherichia coli EALI-EC2


Escherichia coli VI.2732




Escherichia coli LAU-EC3


Escherichia coli VI.2874




Escherichia coli LAU-EC4


Escherichia coli VR50




Escherichia coli LAU-EC5


Escherichia coli W




Escherichia coli LAU-EC6


Escherichia coli W113




Escherichia coli LAU-EC 7


Escherichia coli W181




Escherichia coli LAU-EC8


Escherichia coli W202




Escherichia coli LAU-EC9


Escherichia coli W26




Escherichia coli LCT-EC106


Escherichia coli Wa1




Escherichia coli LCT-EC52


Escherichia coli Wa2




Escherichia coli LCT-EC59


Escherichia coli WC1




Escherichia coli LF82


Escherichia coli WC2




Escherichia coli LT-41


Escherichia coli WV_060327




Escherichia coli XH001


Escherichia coli UMEA 3155-1




Escherichia coli XH140A


Escherichia coli UMEA 3159-1




Escherichia coli Xuzhou21


Escherichia coli UMEA 3160-1




Escherichia coli TW11694


Escherichia coli UMEA 3161-1




Escherichia coli TW11699


Escherichia coli UMEA 3162-1




Escherichia coli TW11704


Escherichia coli UMEA 3 163-1




Escherichia coli TW11728


Escherichia coli UMEA 3172-1




Escherichia coli TW11737


Escherichia coli UMEA 3173-1




Escherichia coli TW11741


Escherichia coli UMEA 3174-1




Escherichia coli TW11756


Escherichia coli UMEA 3 175-1




Escherichia coli TW11767


Escherichia coli UMEA 3176-1




Escherichia coli TW11786


Escherichia coli UMEA 3178-1




Escherichia coli TW11816


Escherichia coli UMEA 3180-1




Escherichia coli TW11833


Escherichia coli UMEA 3185-1




Escherichia coli TW11839


Escherichia coli UMEA 3190-1




Escherichia coli TW11890


Escherichia coli UMEA 3193-1




Escherichia coli TW11906


Escherichia coli UMEA 3199-1




Escherichia coli TW11917


Escherichia coli UMEA 3200-1




Escherichia coli TW11950


Escherichia coli UMEA 3201-1




Escherichia coli TW11951


Escherichia coli UMEA 3203-1




Escherichia coli TW11973


Escherichia coli UMEA 3206-1




Escherichia coli TW 12001


Escherichia coli UMEA 3208-1




Escherichia coli TW12002


Escherichia coli UMEA 3212-1




Escherichia coli TW 12009


Escherichia coli UMEA 3215-1




Escherichia coli TW12014


Escherichia coli UMEA 3216-1




Escherichia coli TW12019


Escherichia coli UMEA 3217-1




Escherichia coli TW12023


Escherichia coli UMEA 3220-1




Escherichia coli TW12033


Escherichia coli UMEA 3221-1




Escherichia coli TW12082


Escherichia coli UMEA 3222-1




Escherichia coli TW12086


Escherichia coli UMEA 3230-1




Escherichia coli TW12093


Escherichia coli UMEA 3233-1




Escherichia coli TW12101


Escherichia coli UMEA 3240-1




Escherichia coli TW14301


Escherichia coli UMEA 3244-1




Escherichia coli TW14313


Escherichia coli UMEA 3252-1




Escherichia coli TW14380


Escherichia coli UMEA 3257-1




Escherichia coli TW14390


Escherichia coli UMEA 3264-1




Escherichia coli TW14397


Escherichia coli UMEA 3268-1




Escherichia coli KTE49


Escherichia coli UMEA 3271-1




Escherichia coli KTE5


Escherichia coli UMEA 3290-1




Escherichia coli KTE50


Escherichia coli UMEA 3292-1




Escherichia coli KTE51


Escherichia coli UMEA 3298-1




Escherichia coli TW14711


Escherichia coli UMEA 3304-1




Escherichia coli TW15901


Escherichia coli UMEA 3314-1




Escherichia coli Txl686


Escherichia coli UMEA 3317-1




Escherichia coli TX1999


Escherichia coli UMEA 3318-1




Escherichia coli Tx3800


Escherichia coli UMEA 3323-1




Escherichia coli UM146


Escherichia coli UMEA 3329-1




Escherichia coli UMEA 3014-1


Escherichia coli UMEA 3336-1




Escherichia coli UMEA 3022-1


Escherichia coli UMEA 3337-1




Escherichia coli EIMEA 3033-1


Escherichia coli UMEA 3341-1




Escherichia coli UMEA 3041-1


Escherichia coli UMEA 3342-1




Escherichia coli UMEA 3052-1


Escherichia coli UMEA 3355-1




Escherichia coli UMEA 3053-1


Escherichia coli LTMEA 3391-1




Escherichia coli UMEA 3065-1


Escherichia coli UMEA 3426-1




Escherichia coli UMEA 3087-1


Escherichia coli UMEA 3489-1




Escherichia coli UMEA 3088-1


Escherichia coli UMEA 3490-1




Escherichia coli UMEA 3097-1


Escherichia coli LTMEA 3585-1




Escherichia coli UMEA 3108-1


Escherichia coli UMEA 3592-1




Escherichia coli UMEA 3113-1


Escherichia coli UMEA 3609-1




Escherichia coli UMEA 3117-1


Escherichia coli UMEA 3617-1




Escherichia coli UMEA 3121-1


Escherichia coli UMEA 3632-1




Escherichia coli UMEA 3122-1


Escherichia coli UMEA 3652-1




Escherichia coli UMEA 3124-1


Escherichia coli UMEA 3656-1




Escherichia coli UMEA 3139-1


Escherichia coli UMEA 3662-1




Escherichia coli UMEA 3140-1


Escherichia coli UMEA 3671-1




Escherichia coli UMEA 3144-1


Escherichia coli UMEA 3682-1




Escherichia coli UMEA 3148-1


Escherichia coli TW14435




Escherichia coli UMEA 3150-1


Escherichia coli TW14406




Escherichia coli UMEA 3151-1


Escherichia coli TW14425




Escherichia coli UMEA 3152-1


Escherichia coli TW14427




Escherichia faecaiis


Escherichia sp. ASG34




Escherichia fergusonii


Escherichia sp. B1147




Escherichia fergusonii ATCC 35469


Escherichia sp. B1225




Escherichia fergusonii B253


Escherichia sp. B4




Escherichia fergusonii ECD227


Escherichia sp. B49




Escherichia hermannii


Escherichia sp. B646




Escherichia hermannii NDRC 105704


Escherichia sp. B685




Escherichia senegalensis


Escherichia sp. B827




Escherichia vulneris


Escherichia sp. BBDP20




Escherichia vulneris NBRC 102420


Escherichia sp. BBDP27




Escherichia sp. 003.10


Escherichia sp. BV24




Escherichia sp. 003.14


Escherichia sp. BV25




Escherichia sp. 003.22


Escherichia sp. CO13(2010)




Escherichia sp. 003.23


Escherichia sp. CPD32




Escherichia sp. 006.16


Escherichia sp. daliu




Escherichia sp. 006.18


Escherichia sp. dayi




Escherichia sp. 006.33


Escherichia sp. DGM MC1E




Escherichia sp. 1.1-11


Escherichia sp. DGM MC3E




Escherichia sp. 1.3-02


Escherichia sp. DGM MC4E




Escherichia sp. 1.9-16


Escherichia sp. DJM1A6




Escherichia sp. 104.10


Escherichia sp. DJM1A8




Escherichia sp. 105.12


Escherichia sp. DJM1B4




Escherichia sp. 105.16


Escherichia sp. DJM1B6




Escherichia sp. 105.17


Escherichia sp. DJM1C4




Escherichia sp. 105.3


Escherichia sp. DM104




Escherichia sp. 105.30


Escherichia sp. DSD31




Escherichia sp. 105.6


Escherichia sp. DSP




Escherichia sp. 115


Escherichia sp. E1118




Escherichia sp. 12


Escherichia sp. E195




Escherichia sp. 1_1_43


Escherichia sp. E1196




Escherichia sp. 2.2.5-13


Escherichia sp. E1492




Escherichia sp. 21CR


Escherichia sp. E24-PCAi-T2P21




Escherichia sp. 22


Escherichia sp. E25-PCAi-T2P21




Escherichia sp. 23


Escherichia sp. E471




Escherichia sp. 23CR


Escherichia sp. E472




Escherichia sp. 253b


Escherichia sp. E5-PCAi-T2P21




Escherichia sp. 26N


Escherichia sp. E620




Escherichia sp. 28N


Escherichia sp. E7-PCAi-T2P21




Escherichia sp. 3-26(2010)


Escherichia sp. E807




Escherichia sp. 32


Escherichia sp. EC3




Escherichia sp. 33


Escherichia sp. EECC-575




Escherichia sp. 34


Escherichia sp. EECC-590




Escherichia sp. 3_2_53FAA


Escherichia sp. EMB 210




Escherichia sp. 4


Escherichia sp. EMB 339




Escherichia sp. 4067


Escherichia sp. ES13




Escherichia sp. 4094


Escherichia sp. F24-PCAi-T3P21




Escherichia sp. 41


Escherichia sp. FH12




Escherichia sp. 42


Escherichia sp. FH14




Escherichia sp. 43


Escherichia sp. FHM101




Escherichia sp. 49


Escherichia sp. FHM102




Escherichia sp. 49A


Escherichia sp. FHM106




Escherichia sp. 4_1_40B


Escherichia sp. FHM113




Escherichia sp. 4B


Escherichia sp. G3




Escherichia sp. 54


Escherichia sp. GDR06




Escherichia sp. 63


Escherichia sp. H442




Escherichia sp. 64


Escherichia sp. H605




Escherichia sp. 68


Escherichia sp. HPCKc-45




Escherichia sp. 6B


Escherichia sp. 16




Escherichia sp. 6CR


Escherichia sp. IICFP6




Escherichia sp. 75R


Escherichiasp. II_B13




Escherichia sp. 7CR


Escherichia sp. July_KB 1F3




Escherichia sp. 80


Escherichia sp. July_NA2A8




Escherichia sp. 88


Escherichia sp. July_TSA2A8




Escherichia sp. A422


Escherichia sp. Kaveri_River_12




Escherichia sp. A441


Escherichia sp. M1108




Escherichia sp. A741


Escherichia sp. M1N2G03




Escherichia sp. A94


Escherichia sp. M2T9B5




Escherichia sp. AF4


Escherichia sp. M863




Escherichia sp. AI(2010)


Escherichia sp. ML-11




Escherichia sp. AJ(2010)


Escherichia sp. ML2-46




Escherichia sp. MSCB-10


Escherichia sp. ZHS050713




Escherichia sp. NBRC 13921


Escherichia sp. ZHS050714




Escherichia sp. Nil


Escherichia sp. ZY-2006a




Escherichia sp. Nj-91


Escherichia sp. 4




Escherichia sp. NMU-ST2

environmental samples



Escherichia sp. OES18


Escherichia coli CAG:4




Escherichia sp. P14


Escherichia sp. enrichment culture clone 01-084




Escherichia sp. PF7


Escherichia sp. enrichment culture clone 02-023




Escherichia sp. RL325/96


Escherichia sp. enrichment culture clone 03-018




Escherichia sp. S4-AA1-4


Escherichia sp. enrichment culture clone 03-426




Escherichia sp. Sam130-5B


Escherichia sp. enrichment culture clone 04




Escherichia sp. Sam130-6A


Escherichia sp. enrichment culture clone 1(2012)




Escherichia sp. SC-C4-4


Escherichia sp. enrichment culture clone 11(2012)




Escherichia sp. SDT20


Escherichia sp. enrichment culture clone 12




Escherichia sp. Sflu5


Escherichia sp. enrichment culture clone 16




Escherichia sp. SI-56


Escherichia sp. enrichment culture clone 17




Escherichia sp. SO-A5-32


Escherichia sp. enrichment culture clone 19(2012)




Escherichia sp. SO-Y1-39


Escherichia sp. enrichment culture clone 23




Escherichia sp. SOD-7317


Escherichia sp. enrichment culture clone 3(2012)




Escherichia sp. Souza-207


Escherichia sp. enrichment culture clone 9(2012)




Escherichia sp. Souza-273


Escherichia sp. enrichment culture clone AVCTGRB2A




Escherichia sp. Souza-57


Escherichia sp. enrichment culture clone AVCTGRB2B




Escherichia sp. SR2-18-f


Escherichia sp. enrichment culture clone CMX




Escherichia sp. SVUB6


Escherichia sp. enrichment culture clone Jdgsrb051




Escherichia sp. SW86


Escherichia sp. enrichment culture clone Jdgsrb055




Escherichia sp. SWM Isolation 4


Escherichia sp. enrichment culture clone Jdgsrb056




Escherichia sp. SZ-6


Escherichia sp. enrichment culture clone NBAR001




Escherichia sp. T2


Escherichia sp. enrichment culture clone NBAR004




Escherichia sp. TA04


Escherichia sp. enrichment culture clone NBAR005




Escherichia sp. TA290


Escherichia sp. enrichment culture clone NBAR006




Escherichia sp. TW09231


Escherichia sp. enrichment culture clone NBAR013




Escherichia sp. TW09254


Escherichia sp. enrichment culture clone NBAR015




Escherichia sp. TW09266


Escherichia sp. enrichment culture clone NBAR018




Escherichia sp. TW09276


Escherichia sp. enrichment culture clone NBAR020




Escherichia sp. TW09308


Escherichia sp. enrichment culture clone NBAR022




Escherichia sp. TW10509


Escherichia sp. enrichment culture clone NBAR023




Escherichia sp. TW11930


Escherichia sp. enrichment culture clone NBAR024




Escherichia sp. TW11966


Escherichia sp. enrichment culture clone NX




Escherichia sp. TW14182


Escherichia sp. enrichment culture clone R_1017-3_OTU3




Escherichia sp. TW 14263


Escherichia sp. enrichment culture clone R_8m3_OTU3




Escherichia sp. TW 14264


Escherichia sp. enrichment culture clone SRC_NBA4




Escherichia sp. TW 14265


Escherichia sp. enrichment culture clone SRC_NBA7




Escherichia sp. TW 14266


Escherichia sp. enrichment culture clone SRC_NBA8




Escherichia sp. TW 14267


Escherichia sp. enrichment culture clone SunHY




Escherichia sp. TW15838


Escherichia sp. enrichment culture clone V-S5SRC 1-51




Escherichia sp. TX3


Escherichia sp. enrichment culture DGGE band D5




Escherichia sp. V2M20


Escherichia sp. oral clone 3RH-30




Escherichia sp. V3M66

uncultured Escherichia clone MT9



Escherichia sp. VA17

uncultured Escherichia sp.



Escherichia sp. VF2(2010)

uncultured Escherichia sp. FR039



Escherichia sp. W8-PCAi-E14

uncultured Escherichia sp. FR040



Escherichia sp. Z205









Genus: Firmicutes








Bacilli
Lactobacillales


Baci Hales
Aerococcaceae


Alicyclobacillaceae
Carnobacteriaceae


Bacillaceae
Enterococcaceae


Listeriaceae
Lactobacillaceae


Paenibacillaceae
Leuconostocaceae


Pasteuriaceae
Streptococcaceae


Planococcaceae
unclassified Lactobacillales


Sporolactobacillaceae
environmental samples


Staphylococcaceae
unclassified Bacilli


Thermoactinomycetaceae
Bacilli bacterium 01A


unclassified Bacillales
Bacilli bacterium 04A


Bacillales incertae sedis
Bacilli bacterium 08A


environmental samples
Bacilli bacterium 09A


Bacilli bacterium 12B
Clostridia bacterium enrichment culture clone


Bacilli bacterium A3-lb
D2CL_Bac_16S_Clone 18


Bacilli bacterium AD51
Clostridia bacterium enrichment culture clone


Bacilli bacterium BC6
D2CL_Bac_16S_Clone 19


Bacilli bacterium BG 5a
Clostridia bacterium enrichment culture clone


Bacilli bacterium f50-7-u8f
D2CL_Bac_16S_Clone 20


Bacilli bacterium JAM-FM0401
Clostridia bacterium enrichment culture clone IIB_114


Bacilli bacterium JGI BulkO13H05
Clostridia bacterium enrichment culture clone HB_117


Bacilli bacterium JW22.2a
Clostridia bacterium enrichment culture clone HB_90


Bacilli bacterium oral taxon C35
Clostridia bacterium enrichment culture clone L11_1_31


Bacilli bacterium oral taxon C43
Clostridia bacterium enrichment culture clone L35B 10


Bacilli bacterium PF61
Clostridia bacterium enrichment culture clone L35B_105


Bacilli bacterium TSW19BA3
Clostridia bacterium enrichment culture clone L35B_145


bacterium 103NT4
Clostridia bacterium enrichment culture clone L35B_146


bacterium 105NT4
Clostridia bacterium enrichment culture clone L35B_152


bacterium 17N1
Clostridia bacterium enrichment culture clone L35B_154


bacterium 18N1
Clostridia bacterium enrichment culture clone L35B_2


bacterium 3E1
Clostridia bacterium enrichment culture clone L35B_30


bacterium 64B4
Clostridia bacterium enrichment culture clone L35B_66


bacterium 66B4
Clostridia bacterium enrichment culture clone L35B_85


bacterium 95LM4
Clostridia bacterium enrichment culture clone L35B_89


bacterium 9B1
Clostridia bacterium enrichment culture clone L35B_99


bacterium WE 1
Clostridia bacterium enrichment culture clone L55B-110


bacterium WE4
Clostridia bacterium enrichment culture clone L55B-127


bacterium WN16
Clostridia bacterium enrichment culture clone L55B-129


environmental samples
Clostridia bacterium enrichment culture clone L55B-21


Bacilli bacterium enrichment culture clone 1-2-1
Clostridia bacterium enrichment culture clone L55B-30


Bacilli bacterium enrichment culture clone YFZ9
Clostridia bacterium enrichment culture clone L55B-38


uncultured Bacilli bacterium
Clostridia bacterium enrichment culture clone L55B-41


Clostridia
Clostridia bacterium enrichment culture clone L55B-44


Clostridiales
Clostridia bacterium enrichment culture clone L55B-73


Caldicoprobacteraceae
Clostridia bacterium enrichment culture clone L55B-80


Catabacteriaceae
Clostridia bacterium enrichment culture clone SIP1 ID


Christensenellaceae
Clostridia bacterium enrichment culture clone SIP3C


Clostridiaceae
Clostridia bacterium enrichment culture clone SIP4D


Defluviitaleaceae
Clostridia bacterium enrichment culture clone WIP10m2D


Eubacteriaceae
Clostridia bacterium enrichment culture clone WSC-26


Gracilibacteraceae
Clostridia bacterium enrichment culture clone WSC-8


Heliobacteriaceae
Clostridia bacterium enrichment culture clone WSC-9


Lachnospiraceae
Clostridia bacterium enrichment culture DGGE band 1


Osci Hospiraceae
Clostridia bacterium enrichment culture RD-M/D-OTU C


Peptococcaceae
uncultured Clostridia bacterium


Peptostreptococcaceae
Erysipelotrichia


Ruminococcaceae
Erysipelotrichales


Syntrophomonadaceae
Erysipelotrichaceae


unclassified Clostridiales
unclassified Erysipelotrichales


Clostridiales incertae sedis
environmental samples


environmental samples
environmental samples


Halanaerobiales
Erysipelotrichi bacterium enrichment culture clone Y12


Halanaerobiaceae
uncultured Erysipelotrichi bacterium


Halobacteroidaceae
Negativicutes


unclassified Halanaerobiales
Selenomonadales


environmental samples
Acidaminococcaceae


Natranaerobiales
Veilionellaceae


Natranaerobiaceae
environmental samples


environmental samples
environmental samples


Thermoanaerobacterales
uncultured Negativicutes bacterium


Thermoanaerobacteraceae
Thermolithobacteria


Thermodesuifobiaceae
Thermolithobacterales


unclassified Thermoanaerobacterales
Thermolithobacteraceae


Thermoanaerobacterales Family III. Incertae Sedis
unclassified Firmicutes sensu stricto


Thermoanaerobacterales Family IV. Incertae Sedis
unclassified Firmicutes sensu stricto (miscellaneous)


environmental samples
anaerobic bacterium TOL


unclassified Clostridia
bacterial str. vp184


unclassified Clostridia (miscellaneous)
bacterial str. vp188


environmental samples
bacterium ASF 500


Clostridia bacterium enrichment culture clone 40D01
alkaliphilic eubacterium 163-26


Clostridia bacterium enrichment culture clone BF
anaerobic bacterium ‘strain 7’


Clostridia bacterium enrichment culture clone
bacterium CBM5-27


D2CL_Bac_16S_Clonel7
bacterium CBM5-49


bacterium TC8
Firmicutes bacterium CPB4


blackwater bioreactor bacterium BW21
Firmicutes bacterium CSC3


endosymbiont ‘TCI’ of Trimyema compressum
Firmicutes bacterium CSC8


Firmicutes bacterium OODQ7
Firmicutes bacterium DJF VP44


Firmicutes bacterium OODQ8
Firmicutes bacterium DJF VR50


Firmicutes bacterium OODQ9
Firmicutes bacterium EG14


Firmicutes bacterium OOYDA
Firmicutes bacterium EG 16


Firmicutes bacterium OOYDC
Firmicutes bacterium EG18


Firmicutes bacterium OOYJS
Firmicutes bacterium EG20


Firmicutes bacterium OOYK2
Firmicutes bacterium EG24


Firmicutes bacterium OOYDJ
Firmicutes bacterium FA1


Firmicutes bacterium OOYDK
Firmicutes bacterium FA1a


Firmicutes bacterium OOYDM
Firmicutes bacterium FAB2


Firmicutes bacterium OOYDS
Firmicutes bacterium G6-4


Firmicutes bacterium OOYDU
Firmicutes bacterium GM12


Firmicutes bacterium OOYFJ
Firmicutes bacterium GM21


Firmicutes bacterium OOYFM
Firmicutes bacterium GM29


Firmicutes bacterium OOYFP
Firmicutes bacterium GM64


Firmicutes bacterium OOYFR
Firmicutes bacterium AV4-2


Firmicutes bacterium OOYIV
Firmicutes bacterium B4 5


Firmicutes bacterium OOYI7.
Firmicutes bacterium JGT 0000119-C08


Firmicutes bacterium OOYJ3
Firmicutes bacterium JGI 0000119-P10


Firmicutes bacterium OOYJ4
Firmicutes bacterium JGI 0001003-N4


Firmicutes bacterium OOYJQ
Firmicutes bacterium JGI 0002005-C11


Firmicutes bacterium 7d3-2
Firmicutes bacterium JS13


Firmicutes bacterium 7d4-l
Firmicutes bacterium K-2054


Firmicutes bacterium 7d4-2
Firmicutes bacterium K-2061


Firmicutes bacterium AD3-1
Firmicutes bacterium K-2063


Firmicutes bacterium AD3-3
Firmicutes bacterium HF1


Firmicutes bacterium Apb7
Firmicutes bacterium HF2


Firmicutes bacterium ASFSOO
Firmicutes bacterium HF4


Firmicutes bacterium AV4-1
Firmicutes bacterium HF5


Firmicutes bacterium 01QG4
Firmicutes bacterium HF6


Firmicutes bacterium 10827
Firmicutes bacterium HKl


Firmicutes bacterium 109-1
Firmicutes bacterium HK11


Firmicutes bacterium 120-6-24
Firmicutes bacterium HK13


Firmicutes bacterium 1229-IDA
Firmicutes bacterium HK14


Firmicutes bacterium 1UG
Firmicutes bacterium HK15


Firmicutes bacterium 215-38
Firmicutes bacterium HK16


Firmicutes bacterium 215-68
Firmicutes bacterium KK17


Firmicutes bacterium 255-2
Firmicutes bacterium HK19


Firmicutes bacterium 293-12
Firmicutes bacterium HK2


Firmicutes bacterium 309-58
Firmicutes bacterium HK20


Firmicutes bacterium 351UG
Firmicutes bacterium HK21


Firmicutes bacterium 43-3
Firmicutes bacterium HK22


Firmicutes bacterium 7dl5-2
Firmicutes bacterium HK23


Firmicutes bacterium 7d2-l
Firmicutes bacterium HK24


Firmicutes bacterium 7d2-2
Firmicutes bacterium HK25


Firmicutes bacterium 7d3-l
Firmicutes bacterium HK26


Firmicutes bacterium baku-08
Firmicutes bacterium HK28


Firmicutes bacterium BAL8
Firmicutes bacterium HK3


Firmicutes bacterium BAL9
Firmicutes bacterium HK30


Firmicutes bacterium BC1
Firmicutes bacterium HK4


Firmicutes bacterium RCOT-I 5
Firmicutes bacterium HK6


Firmicutes bacterium BCOT-3
Firmicutes bacterium HK7


Firmicutes bacterium BCOT-6
Firmicutes bacterium HK8


Firmicutes bacterium BCOT-9
Firmicutes bacterium InGiAl


Firmicutes bacterium RD7-1
Firmicutes bacterium TS2605


Firmicutes bacterium BD7-2
Firmicutes bacterium IS3105


Firmicutes bacterium BD7-3
Firmicutes bacterium Jbgl


Firmicutes bacterium BL80
Firmicutes bacterium Jbg2


Firmicutes bacterium BS-02
Firmicutes bacterium Jbg3


Firmicutes bacterium Bt aa 02
Firmicutes bacterium Jbg4


Firmicutes bacterium BTY6
Firmicutes bacterium Jbg5


Firmicutes bacterium BV9-1
Firmicutes bacterium Jbg6


Firmicutes bacterium BV9-3a
Firmicutes bacterium Jbg7


Firmicutes bacterium BV9-4a
Firmicutes bacterium JGI 0000059-A33


Firmicutes bacterium canine oral taxon 309
Firmicutes bacterium JGI 0000059-D05


Firmicutes bacterium CP4.1
Firmicutes bacterium JGI 0000059-G16


Firmicutes bacterium CP4.3
Firmicutes bacterium JGI 0000059-H17


Firmicutes bacterium Mexcell3.3
Firmicutes bacterium K16


Firmicutes bacterium Mexcell7
Firmicutes bacterium K17


Firmicutes bacterium Mexdttl
Firmicutes bacterium K23


Firmicutes bacterium MMD11
Firmicutes bacterium K24


Firmicutes bacterium MMD12
Firmicutes bacterium K3


Firmicutes bacterium OR-167
Firmicutes bacterium K4


Firmicutes bacterium oral taxon A55
Firmicutes bacterium K7


Firmicutes bacterium oral taxon C68
Firmicutes bacterium K9


Firmicutes bacterium oral taxon D73
Firmicutes bacterium Kam1851


Firmicutes bacterium oral taxon F03
Firmicutes bacterium L10-A08


Firmicutes bacterium oral taxon F06
Firmicutes bacterium LC 13R


Firmicutes bacterium oral taxon G23
Firmicutes bacterium LM4605


Firmicutes bacterium ORNL 20R SB 170
Firmicutes bacterium LX-B


Firmicutes bacterium OS-13B
Firmicutes bacterium LX-D


Firmicutes bacterium PI
Firmicutes bacterium M10-2


Firmicutes bacterium P4
Firmicutes bacterium M28


Firmicutes bacterium PD5-2
Firmicutes bacterium M29


Firmicutes bacterium PM1
Firmicutes bacterium M34


Firmicutes bacterium PM15
Firmicutes bacterium M38


Firmicutes bacterium PM33
Firmicutes bacterium M39


Firmicutes bacterium PM39
Firmicutes bacterium M40


Firmicutes bacterium PM49
Firmicutes bacterium M42


Firmicutes bacterium PV6-lb
Firmicutes bacterium M53


Firmicutes bacterium PV6-4
Firmicutes bacterium M71D119


Firmicutes bacterium Rl 1
Firmicutes bacterium M71 D94


Firmicutes bacterium R24
Firmicutes bacterium M71 S54


Firmicutes bacterium RBE2CD-62
Firmicutes bacterium Macell 1.1


Firmicutes bacterium RD1-3
Firmicutes bacterium Macell3.1


Firmicutes bacterium RD1-6
Firmicutes bacterium Mad1


Firmicutes bacterium rif200828
Firmicutes bacterium Mad4


Firmicutes bacterium RV2-2
Firmicutes bacterium Madtt6


Firmicutes bacterium SC-6EZ3-F-Cy56
Firmicutes bacterium Madttd2.1


Firmicutes bacterium SC-6EZ3-F-Cy62
Firmicutes bacterium Madttd2.2


Firmicutes bacterium SCGC AAA028-E02
Firmicutes bacterium Manl7


Firmicutes bacterium SCGC AAA028-K20
Firmicutes bacterium MCF99


Firmicutes bacterium SCGC AAA041-M19
Firmicutes bacterium Mecdtt4


Firmicutes bacterium SCGC AAA041-N22
Firmicutes bacterium Mecdtt5


Firmicutes bacterium SCGC AAA043-A02
Firmicutes bacterium Mexcdtt7


Firmicutes bacterium SCGC AAA043-F09
Firmicutes bacterium Mexcell2


Firmicutes bacterium SCGC AAA044-J20
Firmicutes bacterium TII-G17


Firmicutes bacterium SCGC AAA044-P03
Firmicutes bacterium TH-H12


Firmicutes bacterium SCGC AAA160-B08
Firmicutes bacterium TH-H16


Firmicutes bacterium SCGC AAA278-I09
Firmicutes bacterium TH-N38


Firmicutes bacterium SCGC AAA280-N09
Firmicutes bacterium TH-N39


Firmicutes bacterium SCGC AAA487-F07
Firmicutes bacterium TH-S33


Firmicutes bacterium SCGC AAA487-G07
Firmicutes bacterium TH-S35


Firmicutes bacterium SCGC AB-670-A06
Firmicutes bacterium TH-S40


Firmicutes bacterium SCGC AB-670-B05
Firmicutes bacterium TH-S57


Firmicutes bacterium SCGC AB-670-E02
Firmicutes bacterium TH-S64


Firmicutes bacterium SCGC AB-670-J02
Firmicutes bacterium TH-S70


Firmicutes bacterium SCGC AB-670-K04
Firmicutes bacterium TP 160


Firmicutes bacterium SCGC AB-670-L02
Firmicutes bacterium TP271


Firmicutes bacterium SCGC AB-670-O02
Firmicutes bacterium TP425


Firmicutes bacterium SCGC AB-670-P10
Firmicutes bacterium TP84


Firmicutes bacterium SCGC AB-674-M10
Firmicutes bacterium TP86


Firmicutes bacterium SCGC AC-310-C05
Firmicutes bacterium TP94


Firmicutes bacterium SCGC AC-310-E10
Firmicutes bacterium UFLA03-11


Firmicutes bacterium SCGC AC-310-F10
Firmicutes bacterium VAS32


Firmicutes bacterium SCGC AC-310-FT6
Firmicutes bacterium VAS38


Firmicutes bacterium SCGC AC-310-G06
Firmicutes bacterium VAS39


Firmicutes bacterium SCGC AC-310-G07
Firmicutes bacterium VAS40


Firmicutes bacterium SCGC AC-310-107
Firmicutes bacterium VAS41


Firmicutes bacterium SCGC AC-310-M02
Firmicutes bacterium VAS48


Firmicutes bacterium SCGC AC-310-M09
Firmicutes bacterium VAS49


Firmicutes bacterium SCGC AC-310-M17
Firmicutes bacterium VAS50


Firmicutes bacterium SCGC AC-310-M18
Firmicutes bacterium VAS51


Firmicutes bacterium SCGC AC-3 J0-NO9
Firmicutes bacterium VAS52


Firmicutes bacterium SCGC AC-310-N17
Firmicutes bacterium VAS53


Firmicutes bacterium SCGC AC-310-009
Firmicutes bacterium VNs03


Firmicutes bacterium K11
Firmicutes bacterium VNs39


Firmicutes bacterium VNs41
low G + C Gram-positive bacterium M53


Firmicutes bacterium VNs44
low G + C Gram-positive bacterium M54


Firmicutes bacterium VNs59
low G + C Gram-positive bacterium M5 5


Firmicutes bacterium W-2006
low G + C Gram-positive bacterium MPD-62


Firmicutes bacterium W-2017
low G + C Gram-positive bacterium MPD-63


Firmicutes bacterium W-2018
low G + C Gram-positive bacterium MPD-67


Firmicutes bacterium Washl 1.2
low G + C Gram-positive bacterium MPD-76


Firmicutes bacterium Wash5
low G + C Gram-positive bacterium R2A161


Firmicutes bacterium WD116
low G + C Gram-positive bacterium R2A180


Firmicutes bacterium WD117
low G + C Gram-positive bacterium R2A28


Firmicutes bacterium WD121
low G 1 C Gram-positive bacterium S-N(0)-17C


Firmicules baclerium WD3
low G + C Gram-positive baclerium S-N(l)-3


Firmicutes bacterium WD526
low G + C Gram-positive bacterium S-St(l)-6A


Firmicutes bacterium WD6
low G + C Gram-positive bacterium S-St(nd)-7D2


Firmicutes bacterium WD80
low G + C Gram-positive bacterium S-Su(l)-8A


Firmicutes bacterium WD83
low G + C Gram-positive bacterium S-Su(2)-18


Firmicutes bacterium WH009142s
low G + C Gram-positive bacterium S4


Firmicutes bacterium WSF2-15
low G + C Gram-positive bacterium S5


Firmicutes bacterium X3
low G 1 C Gram-positive bacterium SA-5


Firmicutes bacterium YJF1-16
low G + C Gram-positive bacterium SSCA31


low G + C Gram-positive bacterium B773
Firmicutes bacterium SCGC AC-310-O15


low G + C Gram-positive bacterium B775
Firmicutes bacterium SCGC AC-310-020


low G + C Gram-positive bacterium BALI28
Firmicutes bacterium SCGC AC-310-O21


low G + C Gram-positive bacterium D-N(0)-4D
Firmicutes bacterium SCGC AC-310-P16


low G + C Gram-positive bacterium D-N(l)-11A
Firmicutes bacterium SCGC AC-699-C23


low G + C Gram-positive bacterium D-N(1)-1B
Firmicutes bacterium SCGC AC-699-M18


low G + C Gram-positive bacterium D-N(1)-1C
Firmicutes bacterium SD1


low G + C Gram-positive bacterium D-N(1)-1D
Firmicutes bacterium SE1905


low G + C Gram-positive bacterium D-N(1)-2A
Firmicutes bacterium SE2005


low G + C Gram-positive bacterium D-N(1)-3C
Firmicutes bacterium SE2105


low G + C Gram-positive bacterium D-N(2)-1A
Firmicutes bacterium SH-4-1


low G + C Gram-positive bacterium D-N(2)-2B
Firmicutes bacterium SH-4-3-1


low G + C Gram-positive bacterium D-N(2)-2C
Firmicutes bacterium SH-5-2


low G + C Gram-positive bacterium D-N(2)-3A
Firmicutes bacterium SL-6


low G + C Gram-positive bacterium D-N(2)-3B2
Firmicutes bacterium SM22


low G + C Gram-positive bacterium D-St(l)-3
Firmicutes bacterium SM60


low G + C Gram-positive bacterium D-Su(l)-14A
Firmicutes bacterium SP83


low G + C Gram-positive bacterium D-Su(l)-19B
Firmicutes bacterium SRC01-ECW


low G + C Gram-positive bacterium D-Su(l)-21A
Firmicutes bacterium T17b-60


low G + C Gram-positive bacterium D-Su(l)-21B
Firmicutes bacterium T17b-64


low G + C Gram-positive bacterium D-Su(l)-21C
Firmicutes bacterium T28-15


low G + C Gram-positive bacterium D-Su(l)-22
Firmicutes bacterium T28-20a


low G + C Gram-positive bacterium D-Su(l)-25
Firmicutes bacterium T28-9b


low G 1 C Gram-positive bacterium D-Su(l)-4B
Firmicutes bacterium T30b-36


low G + C Gram-positive bacterium D-Su(l)-5
Firmicutes bacterium TAT AC-10


low G + C Gram-positive bacterium D-Su(l)-6B
Firmicutes bacterium TG10


low G + C Gram-positive bacterium D-Su(l)-7B
Firmicutes bacterium TG11


low G + C Gram-positive bacterium D-Su(l)-7C
Firmicutes bacterium TG14


low G + C Gram-positive bacterium D-Su(2)-10
Firmicutes bacterium TGI 5


low G + C Gram-positive bacterium HTA1415
Firmicutes bacterium TG17


low G + C Gram-positive bacterium HTA1416
Firmicutes bacterium TGI8


low G + C Gram-positive bacterium HTA1417
Firmicutes bacterium TGI9


low G + C Gram-positive bacterium HTA1418
Firmicutes bacterium TG2


low G + C Gram-positive bacterium HTA1420
Firmicutes bacterium TG20


low G + C Gram-positive bacterium HTA1422
Firmicutes bacterium TG21


low G + C Gram-positive bacterium HTA426
Firmicutes bacterium TG24


low G + C Gram-positive bacterium HTA437
Firmicutes bacterium TG25


low G + C Gram-positive bacterium HTA454
Firmicutes bacterium TG26


low G + C Gram-positive bacterium HTA462
Firmicutes bacterium TG27


low G + C Gram-positive bacterium HTA484
Firmicutes bacterium TG29


low G + C Gram-positive bacterium HTA506
Firmicutes bacterium TG3


low G + C Gram-positive bacterium HTA563
Firmicutes bacterium TG30


low G + C Gram-positive bacterium HTE856
Firmicutes bacterium TG32


low G + C Gram-positive bacterium IRB 1
Firmicutes bacterium TG34


low G + C Gram-positive bacterium L23
Firmicutes bacterium TG39


low G + C Gram-positive bacterium LVS-50
Firmicutes bacterium TG4


low G + C Gram-positive bacterium M33
Firmicutes bacterium TG6


low G + C Gram-positive bacterium M34
Firmicutes bacterium TG7


low G + C Gram-positive bacterium M51
Firmicutes bacterium TG8


low G + C Gram-positive bacterium M52
Firmicutes bacterium TG9


Firmicutes bacterium TGT3-6A
Firmicutes bacterium C AG:170


Firmicutes bacterium TGT5-5A
Firmicutes bacterium CAG:176


Firmicutes bacterium TGT5-5B
Firmicutes bacterium CAG:194


Firmicutes bacterium TGTM-5A
Firmicutes bacterium CAG:212


Firmicutes bacterium TGTM-5B
Firmicutes bacterium CAG:227


Firmicutes bacterium TH-G1
Firmicutes bacterium CAG:238


low G + C Gram-positive bacterium zo05
Firmicutes bacterium CAG:24


low GC Gram-positive bacterium strain AHT28
Firmicutes bacterium CAG:240


low GC Gram-positive bacterium strain AHT29
Firmicutes bacterium CAG:270


marine bacterium NBF29
Firmicutes bacterium CAG:272


marine bacterium NBF32
Firmicutes bacterium CAG:308


marine bacterium SIMO IS-S76-284
Firmicutes bacterium CAG:313


marine bacterium SIMO-IS120
Firmicutes bacterium CAG:321


marine bacterium SIMO-IS131
Firmicutes bacterium CAG:341


marine bacterium SIMO-IS186
Firmicutes bacterium CAG:345


marine bacterium SIMO-IS188
Firmicutes bacterium CAG:41


marine bacterium SIMO-IS189
Firmicutes bacterium CAG:424


marine bacterium SIMO-IS191
Firmicutes bacterium CAG:449


marine bacterium SIMO-IS194
Firmicutes bacterium CAG:460


marine bacterium SIMO-IS197
Firmicutes bacterium CAG:466


marine bacterium SIMO-TS206
Firmicutes bacterium CAG:475


marine bacterium SIMO-IS209
Firmicutes bacterium CAG:534


marine bacterium SIMO-IS212
Firmicutes bacterium CAG:536


marine bacterium SIMO-IS214
Firmicutes bacterium CAG:552


marine bacterium SIMO-TS215
Firmicutes bacterium CAG:555


marine bacterium SIMO-IS216
Firmicutes bacterium CAG:56


marine firmicute 1P07AA
Firmicutes bacterium CAG:582


marine firmicute HTB096
Firmicutes bacterium CAG:631


marine firmicute HTB113
Firmicutes bacterium CAG:646


mixed culture isolate koll!3
Firmicutes bacterium CAG:65


segmented filamentous bacterium
Firmicutes bacterium CAG:791


low G + C Gram-positive bacterium SSCS10
Firmicutes bacterium CAG:822


low G + C Gram-positive bacterium SSCS20
Firmicutes bacterium CAG:83


low G + C Gram-positive bacterium SSCS21-2
Firmicutes bacterium CAG:882


low G + C Gram-positive bacterium SSCS28
Firmicutes bacterium CAG:884


low G + C Gram-positive bacterium SSCS35
Firmicutes bacterium CAG:94


low G + C Gram-positive bacterium SSCS42
Firmicutes bacterium CAG:95


low G + C Gram-positive bacterium SSCT75
Firmicutes bacterium enrichment culture clone 0-6F07


low G + C Gram-positive bacterium SSCT76
Firmicutes bacterium enrichment culture clone 106MTBE


low G + C Gram-positive bacterium SSCT84-2
Firmicutes bacterium enrichment culture clone 16695 ECW 20


low G + C Gram-positive bacterium T134
Firmicutes bacterium enrichment culture clone 16695 ECW 21


low G + C Gram-positive bacterium T135
Firmicutes bacterium enrichment culture clone 16695 ECW 22


low G + C Gram-positive bacterium T152
Firmicutes bacterium enrichment culture clone 16695 ECW 24


low G I C Gram-positive bacterium T155
Firmicutes bacterium enrichment culture clone 16695 ECW 6


low G + C Gram-positive bacterium TR1
Firmicutes bacterium enrichment culture clone 16695 ECW 8


low G + C Gram-positive bacterium wo 11
Firmicutes bacterium enrichment culture clone 4.17b Bac band 1


low G + C Gram-positive bacterium wo47
Firmicutes bacterium enrichment culture clone 4.17b Bac band 2


unidentified low G + C gram-positive bacterium RS10
Firmicutes bacterium enrichment culture clone 4.17b Bac band 3


unidentified low G + C gram-positive bacterium RS13
Firmicutes bacterium enrichment culture clone 4.17b Bac band 4


unidentified low G + C gram-positive bacterium RS16
Firmicutes bacterium enrichment culture clone A17


unidentified low G + C gram-positive bacterium RSI9
Firmicutes bacterium enrichment culture clone B31179


swine manure bacterium PC9
Firmicutes bacterium enrichment culture clone BSK 1


thermophilic bacterium JA2
Firmicutes bacterium enrichment culture clone BSK 108


Firmicutes symbiont of Osedax sp.
Firmicutes bacterium enrichment culture clone BSK 11


unidentified bacterium Par64
Firmicutes bacterium enrichment culture clone BSK 114


unidentified low G + C gram-positive bacterium RS20
Firmicutes bacterium enrichment culture clone BSK 125


unidentified low G + C gram-positive bacterium RS21
Firmicutes bacterium enrichment culture clone BSK 23


unidentified low G + C gram-positive bacterium RS21 a
Firmicutes bacterium enrichment culture clone BSK 30


unidentified low G + C gram-positive bacterium RS3
Firmicutes bacterium enrichment culture clone BSK 36


unidentified low G + C gram-positive bacterium RS5
Firmicutes bacterium enrichment culture clone BSK 37


unidentified low G + C gram-positive bacterium SI2
Firmicutes bacterium enrichment culture clone BSK 40


environmental samples
Firmicutes bacterium enrichment culture clone BSK 41


Firmicutes bacterium CAG:102
Firmicutes bacterium enrichment culture clone BSK 48


Firmicutes bacterium CAG:103
Firmicutes bacterium enrichment culture clone BSK 52


Firmicutes bacterium CAG:110
Firmicutes bacterium enrichment culture clone BSK 58


Firmicutes bacterium CAG:114
Firmicutes bacterium enrichment culture clone BSK 60


Firmicutes bacterium C AG:124
Firmicutes bacterium enrichment culture clone BSK 67


Firmicutes bacterium CAG:129
Firmicutes bacterium enrichment culture clone BSK 88


Firmicutes bacterium CAG:137
Firmicutes bacterium enrichment culture clone BSK 94


Firmicutes bacterium CAG:145
Firmicutes bacterium enrichment culture clone BSK 96


Firmicutes bacterium enrichment culture clone BSK 97
Firmicutes bacterium enrichment culture clone CTBE CDB 1009D09


Firmicutes bacterium enrichment culture clone BSK 98
Firmicutes bacterium enrichment culture clone CTBE CDB1009D10


Firmicutes bacterium enrichment culture clone BSK 99
Firmicutes bacterium enrichment culture clone CTBE CDB 1009D11


Firmicutes bacterium enrichment culture clone CTBE CDB1001A07
Firmicutes bacterium enrichment culture clone CTBE CDB1009E02


Firmicutes bacterium enrichment culture clone CTBE CDB1001H03
Firmicutes bacterium enrichment culture clone CTBE CDB1009E03


Firmicutes bacterium enrichment culture clone CTBE CDB1006A02
Firmicutes bacterium enrichment culture clone CTBE CDB1009E04


Firmicutes bacterium enrichment culture clone CTBE CDB 1006A04
Firmicutes bacterium enrichment culture clone CTBE CDB1009E05


Firmicutes bacterium enrichment culture clone CTBE CDB1006A06
Firmicutes bacterium enrichment culture clone CTBE CDB1009E06


Firmicutes bacterium enrichment culture clone CTBE CDB1006A07
Firmicutes bacterium enrichment culture clone CTBE CDB1009E07


Firmicutes bacterium enrichment culture clone CTBE CDB1006A08
Firmicutes bacterium enrichment culture clone CTBE CDB1009E10


Firmicutes bacterium enrichment culture clone CTBE CDB1006A09
Firmicutes bacterium enrichment culture clone CTBE CDB 1009F03


Firmicutes bacterium enrichment culture clone CTBE CDB1006A10
Firmicutes bacterium enrichment culture clone CTBE CDB1009F04


Firmicutes bacterium enrichment culture clone CTBE CDB1006B01
Firmicutes bacterium enrichment culture clone CTBE CDB1009F05


Firmicutes bacterium enrichment culture clone CTBE CDB1006B07
Firmicutes bacterium enrichment culture clone CTBE CDB1009F06


Firmicutes bacterium enrichment culture clone CTBE CDB1006B10
Firmicutes bacterium enrichment culture clone CTBE CDB1009F07


Firmicutes bacterium enrichment culture clone CTBE CDB1006B11
Firmicutes bacterium enrichment culture clone CTBE CDB1009F12


Firmicutes bacterium enrichment culture clone CTBE CDB1006B12
Firmicutes bacterium enrichment culture clone CTBE CDB1009G02


Firmicutes bacterium enrichment culture clone CTBE CDB 1006C06
Firmicutes bacterium enrichment culture clone CTBE CDB1009G07


Firmicutes bacterium enrichment culture clone CTBE CDB1006C07
Firmicutes bacterium enrichment culture clone CTBE CDB1009G08


Firmicutes bacterium enrichment culture clone CTBE CDB1006C09
Firmicutes bacterium enrichment culture clone CTBE CDB1009G12


Firmicutes bacterium enrichment culture clone CTBE CDB1006C10
Firmicutes bacterium enrichment culture clone CTBE CDB1009H01


Firmicutes bacterium enrichment culture clone CTBE CDB1006C11
Firmicutes bacterium enrichment culture clone CTBE CDB 1009H02


Firmicutes bacterium enrichment culture clone CTBE CDB1006C12
Firmicutes bacterium enrichment culture clone CTBE CDB1009H04


Firmicutes bacterium enrichment culture clone CTBE CDB1006D05
Firmicutes bacterium enrichment culture clone CTBE CDB1009H05


Firmicutes bacterium enrichment culture clone CTBE CDB 1006D06
Firmicutes bacterium enrichment culture clone CTBE CDB1009H07


Firmicutes bacterium enrichment culture clone CTBE CDB 1006D07
Firmicutes bacterium enrichment culture clone C TBE CDB1009H09


Firmicutes bacterium enrichment culture clone CTBE CDB 1006D08
Firmicutes bacterium enrichment culture clone CTBE CDB1009H10


Firmicutes bacterium enrichment culture clone CTBE CDB1006D10
Firmicutes bacterium enrichment culture clone CTBE CDB1010A02


Firmicutes bacterium enrichment culture clone CTBE CDB1006D11
Firmicutes bacterium enrichment culture clone CTBE CDB1010A03


Firmicutes bacterium enrichment culture clone CTBE CDB1006E04
Firmicutes bacterium enrichment culture clone CTBE CDB1010A04


Firmicutes bacterium enrichment culture clone CTBE CDB1006E07
Firmicutes bacterium enrichment culture clone CTBE CDB1010A07


Firmicutes bacterium enrichment culture clone CTBE CDB1006E08
Firmicutes bacterium enrichment culture clone CTBE CDB1010A08


Firmicutes bacterium enrichment culture clone CTBE CDB1006E09
Firmicutes bacterium enrichment culture clone CTBE CDB1010A09


Firmicutes bacterium enrichment culture clone CTBE CDB1006E10
Firmicutes bacterium enrichment culture clone C TBE CDB1010A12


Firmicutes bacterium enrichment culture clone CTBE CDB1006E11
Firmicutes bacterium enrichment culture clone CTBE CDB1010B02


Firmicutes bacterium enrichment culture clone CTBE CDB1006F02
Firmicutes bacterium enrichment culture clone CTBE CDB1010B04


Firmicutes bacterium enrichment culture clone CTBE CDB 1006F06
Firmicutes bacterium enrichment culture clone CTBE CDB1010B07


Firmicutes bacterium enrichment culture clone CTBE CDB 1006F07
Firmicutes bacterium enrichment culture clone CTBE CDB1010B10


Firmicutes bacterium enrichment culture clone CTBE CDB1006F08
Firmicutes bacterium enrichment culture clone CTBE CDB1010B11


Firmicutes bacterium enrichment culture clone CTBE CDB 1006F11
Firmicutes bacterium enrichment culture clone CTBE CDB1010C01


Firmicutes bacterium enrichment culture clone CTBE CDB1006G03
Firmicutes bacterium enrichment culture clone CTBE CDB1010C02


Firmicutes bacterium enrichment culture clone CTBE CDB1006G06
Firmicutes bacterium enrichment culture clone CTBE CDB1010C03


Firmicutes bacterium enrichment culture clone CTBE CDB1006G07
Firmicutes bacterium enrichment culture clone CTBE CDB1010C05


Firmicutes bacterium enrichment culture clone CTBE CDB1006G08
Firmicutes bacterium enrichment culture clone CTBE CDB1010C06


Firmicutes bacterium enrichment culture clone CTBE CDB1006G10
Firmicutes bacterium enrichment culture clone CTBE CDB 1010C07


Firmicutes bacterium enrichment culture clone CTBE CDB1006H06
Firmicutes bacterium enrichment culture clone CTBE CDB1010C08


Firmicutes bacterium enrichment culture clone CTBE CDB1006H07
Firmicutes bacterium enrichment culture clone CTBE CDB 1010C11


Firmicutes bacterium enrichment culture clone CTBE CDB 1006H08
Firmicutes bacterium enrichment culture clone CTBE CDB1010C12


Firmicutes bacterium enrichment culture clone CTBE CDB1006H09
Firmicutes bacterium enrichment culture clone CTBE CDB1010D07


Firmicutes bacterium enrichment culture clone CTBE CDB1006H10
Firmicutes bacterium enrichment culture clone CTBE CDB1010D08


Firmicutes bacterium enrichment culture clone CTBE CDB1006H11
Firmicutes bacterium enrichment culture clone CTBE CDB1010D10


Firmicutes bacterium enrichment culture clone CTBE CDB1006H12
Firmicutes bacterium enrichment culture clone CTBE CDB1010D12


Firmicutes bacterium enrichment culture clone CTBE CDB1009A05
Firmicutes bacterium enrichment culture clone CTBE CDB1010E04


Firmicutes bacterium enrichment culture clone CTBE CDB1009A08
Firmicutes bacterium enrichment culture clone CTBE CDB1010E06


Firmicutes bacterium enrichment culture clone CTBE CDB1009A10
Firmicutes bacterium enrichment culture clone CTBE CDB1010E07


Firmicutes bacterium enrichment culture clone CTBE CDB1009A12
Firmicutes bacterium enrichment culture clone CTBE CDB 1010E10


Firmicutes bacterium enrichment culture clone CTBE CDB1009B03
Firmicutes bacterium enrichment culture clone CTBE CDB1010E11


Firmicutes bacterium enrichment culture clone CTBE CDB 1009B04
Firmicutes bacterium enrichment culture clone CTBE CDB1010F0I


Firmicutes bacterium enrichment culture clone CTBE CDB 1009B07
Firmicutes bacterium enrichment culture clone C TBE CDB1010F03


Firmicutes bacterium enrichment culture clone CTBE CDB1009B08
Firmicutes bacterium enrichment culture clone CTBE CDB1010F04


Firmicutes bacterium enrichment culture clone CTBE CDB 1009C03
Firmicutes bacterium enrichment culture clone CTBE CDB1010F06


Firmicutes bacterium enrichment culture clone CTBE CDB 1009C04
Firmicutes bacterium enrichment culture clone CTBE CDB1010F07


Firmicutes bacterium enrichment culture clone CTBE CDB 1009C06
Firmicutes bacterium enrichment culture clone CTBE CDB1010F08


Firmicutes bacterium enrichment culture clone CTBE CDB1009C08
Firmicutes bacterium enrichment culture clone CTBE CDB1010G02


Firmicutes bacterium enrichment culture clone CTBE CDB1009C11
Firmicutes bacterium enrichment culture clone CTBE CDB1010G03


Firmicutes bacterium enrichment culture clone CTBE CDB1009D03
Firmicutes bacterium enrichment culture clone CTBE CDB1010G05


Firmicutes bacterium enrichment culture clone CTBE CDB1009D04
Firmicutes bacterium enrichment culture clone CTBE CDB1010G06


Firmicutes bacterium enrichment culture clone CTBE CDB1009D05
Firmicutes bacterium enrichment culture clone CTBE CDB1010G07


Firmicutes bacterium enrichment culture clone CTBE CDB1009D06
Firmicutes bacterium enrichment culture clone CTBE CDB1010G12


Firmicutes bacterium enrichment culture clone CTBE CDB1009D08
Firmicutes bacterium enrichment culture clone CTBE CDB1010H01


Firmicutes bacterium enrichment culture clone CTBE CDB1010H05
uncultured feedlot manure bacterium A54


Firmicutes bacterium enrichment culture clone CTBE CDB1010H09
uncultured feedlot manure bacterium A77


Firmicutes bacterium enrichment culture clone CTBE CDB1010H11
uncultured feedlot manure bacterium A84


Firmicutes bacterium enrichment culture clone DhRA2/LM-A04
uncultured feedlot manure bacterium B1


Firmicutes bacterium enrichment culture clone E197
uncultured feedlot manure bacterium B101


Firmicutes bacterium enrichment culture clone E200
uncultured feedlot manure bacterium B117


Firmicutes bacterium enrichment culture clone J
uncultured feedlot manure bacterium B126


Firmicutes bacterium enrichment culture clone j220
uncultured feedlot manure bacterium B17


Firmicutes bacterium enrichment culture clone L12
uncultured feedlot manure bacterium B2


Firmicutes bacterium enrichment culture clone MLSB6m7B
uncultured feedlot manure bacterium B29


Firmicutes bacterium enrichment culture clone MS LAC Ull
uncultured feedlot manure bacterium B51


Firmicutes bacterium enrichment culture clone MS NAP N15
uncultured feedlot manure bacterium B56


Firmicutes bacterium enrichment culture clone MS NAP N4
uncultured feedlot manure bacterium B6


Firmicutes bacterium enrichment culture clone otu Fl
uncultured feedlot manure bacterium B7


Firmicutes bacterium enrichment culture clone phylotype P9
uncultured feedlot manure bacterium B78


Firmicutes bacterium enrichment culture clone VNABa03
uncultured feedlot manure bacterium B8


Firmicutes bacterium enrichment culture clone VNBB003
uncultured feedlot manure bacterium B81


Firmicutes bacterium enrichment culture clone VNBB004
uncultured feedlot manure bacterium B82


Firmicutes bacterium enrichment culture clone VNC1B071
uncultured feedlot manure bacterium B85


Firmicutes bacterium enrichment culture clone WSC-21
uncultured feedlot manure bacterium B87


Firmicutes bacterium enrichment culture clone WSC-32
uncultured feedlot manure bacterium B90


Firmicutes bacterium oral clone 24-91
uncultured fermented cassava bacterium M10


hydrogen production community clone HPB-G1-14
uncultured fermented cassava bacterium M2


metal-contaminated soil clone K20-13
uncultured fermented cassava bacterium M4


metal-contaminated soil clone K20-14
uncultured fermented cassava bacterium M5


metal-contaminated soil clone K20-66
uncultured fermented cassava bacterium M6


uncultured bacterium #0319-23G15
uncultured fermented cassava bacterium M7


uncultured bacterium #0319-7G4
uncultured fermented cassava bacterium MS


uncultured bacterium #0319-7J14
uncultured fermented cassava bacterium M9


uncultured bacterium CLEAR-17
uncultured Firmicutes bacterium


uncultured bacterium CLEAR-33
uncultured hydrocarbon seep bacterium BPC043


uncultured bacterium CLEAR-6
uncultured hydrocarbon seep bacterium BPC060


uncultured bacterium EKHO-4
uncultured hydrocarbon seep bacterium BPC094


uncultured bacterium mlel-9
uncultured Low G + C gram positive bacterium Kmlps3-23


uncultured bacterium O11D9
uncultured low G + C gram positive bacterium MT35


uncultured bacterium SCALE-16
uncultured low G + C gram positive bacterium MT38


uncultured bacterium SJA-112
uncultured low G + C gram positive bacterium n35r


uncultured bacterium SJA-118
uncultured low G + C Gram-positive bacterium


uncultured bacterium SJA-131
uncultured low G + C Gram-positive bacterium 102ev


uncultured bacterium SJA-136
uncultured low G + C Gram-positive bacterium 105ev


uncultured bacterium SJA-143
uncultured low G + C Gram-positive bacterium 108ev


uncultured bacterium SJA-173
uncultured low G + C Gram-positive bacterium lOev


uncultured bacterium SJA-29
uncultured low G + C Gram-positive bacterium 11 lev


uncultured bacterium SJA-65
uncultured low G 1 C Gram-positive bacterium 119ev


uncultured bacterium SJA-84
uncultured low G + C Gram-positive bacterium 121ev


uncultured bacterium tbrl-1
uncultured low G + C Gram-positive bacterium 129ev


uncultured bacterium tbrl-10
uncultured low G + C Gram-positive bacterium 12ev


uncultured bacterium tbrl-8
uncultured low G + C Gram-positive bacterium 132cv


uncultured bacterium tbrl-9
uncultured low G + C Gram-positive bacterium 135ev


uncultured bacterium tbr4-15
uncultured low G + C Gram-positive bacterium 13ev


uncultured bacterium tbr4-78
uncultured low G + C Gram-positive bacterium 145ev


uncultured eubacterium WCHA1-17
uncultured low G + C Gram-positive bacterium 146cv


uncultured eubacterium WCHA1-45
uncultured low G + C Gram-positive bacterium 15lev−


uncultured eubacterium WCHA1-53
uncultured low G + C Gram-positive bacterium 178ev


uncultured eubacterium WCHB1-20
uncultured low G + C Gram-positive bacterium 17ev


uncultured eubacterium WCHB 1-21
uncultured low G + C Gram-positive bacterium 188ev


uncultured eubacterium WCHB 1-49
uncultured low G + C Gram-positive bacterium 208ev


uncultured eubacterium WCHB 1-54
uncultured low G + C Gram-positive bacterium 20ev


uncultured eubacterium WCHB 1-71
uncultured low G + C Gram-positive bacterium 219ev


uncultured eubacterium WCHB 1-77
uncultured low G + C Gram-positive bacterium 225ev


uncultured eubacterium WCHB 1-82
uncultured low G + C Gram-positive bacterium 228ev


uncultured eubacterium WCHB 1-84
uncultured low G + C Gram-positive bacterium 236ev


uncultured eubacterium WCHB 1-89
uncultured low G + C Gram-positive bacterium 243ev


uncultured eubacterium WFeAl-16
uncultured low G + C Gram-positive bacterium 248ev


uncultured eubacterium WsCH 1
uncultured low G + C Gram-positive bacterium 26lev


uncultured eubacterium WsCH5
uncultured low G + C Gram-positive bacterium 274ev


uncultured eubacterium WsCHS
uncultured low G + C Gram-positive bacterium 275ev


uncultured feedlot manure bacterium A13
uncultured low G + C Gram-positive bacterium 28ev


uncultured feedlot manure bacterium A18
uncultured low G + C Gram-positive bacterium 29lev


uncultured feedlot manure bacterium A20
uncultured low G + C Gram-positive bacterium 29ev


uncultured low G + C Gram-positive bacterium 301ev
unidentified rumen bacterium JW19


uncultured low G + C Gram-positive bacterium 303ev
unidentified rumen bacterium JW21


uncultured low G + C Gram-positive bacterium 306ev
unidentified rumen bacterium JW23


uncultured low G + C Gram-positive bacterium 307ev
unidentified rumen bacterium JW24


uncultured low G + C Gram-positive bacterium 31 Oev
unidentified rumen bacterium JW25


uncultured low G + C Gram-positive bacterium 33ev
unidentified rumen bacterium JW26


uncultured low G + C Gram-positive bacterium 340ev
unidentified rumen bacterium JW28


uncultured low G + C Gram-positive bacterium 355ev
unidentified rumen bacterium JW29


uncultured low G + C Gram-positive bacterium 35 Sev
unidentified rumen bacterium JW3


uncultured low G + C Gram-positive bacterium 370ev
unidentified rumen bacterium JW32


uncultured low G + C Gram-positive bacterium 37lev
unidentified rumen bacterium JW33


uncultured low G + C Gram-positive bacterium 372ev
unidentified rumen bacterium JW5


uncultured low G + C Gram-positive bacterium 377ev
unidentified rumen bacterium JW6


uncultured low G + C Gram-positive bacterium 380ev
unidentified rumen bacterium RC15


uncultured low G + C Gram-positive bacterium 398cv
unidentified rumen bacterium RC6


uncultured low G + C Gram-positive bacterium 400ev
unidentified rumen bacterium RCP1


uncultured low G + C Gram-positive bacterium 41 lev
unidentified rumen bacterium RF3


uncultured low G + C Gram-positive bacterium 414ev



uncultured low G 1 C Gram-positive bacterium 430ev



uncultured low G + C Gram-positive bacterium 433ev



uncultured low G + C Gram-positive bacterium 437ev



uncultured low G + C Gram-positive bacterium 43ev



uncultured low G + C Gram-positive bacterium 444cv



uncultured low G + C Gram-positive bacterium 48ev



uncultured low G + C Gram-positive bacterium 53ev



uncultured low G + C Gram-positive bacterium 59ev



uncultured low G + C Gram-positive bacterium 5ev



uncultured low G + C Gram-positive bacterium 75ev



uncultured low G + C Gram-positive bacterium 77ev



uncultured low G + C Gram-positive bacterium 78ev



uncultured low G + C Gram-positive bacterium 7ev



uncultured low G + C Gram-positive bacterium 82ev



uncultured low G + C Gram-positive bacterium 9lev



uncultured low G + C Gram-positive bacterium 92ev



uncultured low G + C Gram-positive bacterium 98ev



uncultured low G + C Gram-positive bacterium clone OPB54



uncultured low G + C Gram-positive bacterium SHD-209



uncultured Low G + C Gram-positive bacterium Sva0855



uncultured Low G + C Gram-positive bacterium Sval064



uncultured low-GC gram+ bacterium kpa86rc



uncultured marine Gram-positive bacterium DH148-Z18



uncultured sludge bacterium A28



uncultured synthetic wastewater bacterium tmbrl 1-29



uncultured synthetic wastewater bacterium tmbrl 1-6



uncultured synthetic wastewater bacterium tmbrl 1-7



uncultured synthetic wastewater bacterium tmbrl5-12



uncultured synthetic wastewater bacterium tmbrl 5-20



uncultured synthetic wastewater bacterium tmbrl 5-26



unidentified eubacterium RB04



unidentified eubacterium RB05



unidentified eubacterium RB07



unidentified eubacterium RB08



unidentified eubacterium RB16



unidentified eubacterium RB17



unidentified eubacterium RB29



unidentified eubacterium RB38



unidentified low G + C gram-positive bacterium



unidentified oil field bacterium KUBA7



unidentified oii field bacterium SYNK4



unidentified rumen bacterium 12-110



unidentified rumen bacterium 12-116



unidentified rumen bacterium 12-124



unidentified rumen bacterium 12-128



unidentified rumen bacterium 12-74



unidentified rumen bacterium 12-76



unidentified rumen bacterium 30-2



unidentified rumen bacterium 30-20



unidentified rumen bacterium JW11



unidentified rumen bacterium JW13



unidentified rumen bacterium JW18








Genus: Bacteroidetes








Bacteroidia
Flavobacteria bacterium PG2S01


Bacteroidales
Flavobacteria bacterium S1-62


Bacteroidaceae
Flavobacteria bacterium SC2


Marinilabiliaceae
Flavobacteria bacterium SC4


Porphyromonadaceae
Flavobacteria bacterium SG-13


Prevotellaceae
Flavobacteria bacterium SG-18


Rikenellaceae
Flavobacteria bacterium SO53PV


unclassified Bacteroidales
Flavobacteria bacterium SOMB059


environmental samples
Flavobacteria bacterium SR3


unclassified Bacteroidia
Flavobacteria bacterium TW-JL-17


Bacteroidia bacterium canine oral taxon 041
Flavobacteria bacterium TW-JL-80


Bacteroidia bacterium canine oral taxon 187
Flavobacteria bacterium UST061013-075


Bacteroidia bacterium canine oral taxon 301
Flavobacteria bacterium UST061013-076


Bacteroidia bacterium canine oral taxon 387
Flavobacteria bacterium Yb001


environmental samples
Flavobacteria bacterium Yb004


uncultured Bacteroidia bacterium
Flavobacteria bacterium Yb008


Cytopfiagia
Flavobacteria bacterium Yb009


Cytopfiagales
Flavobacteria bacterium Yb011


Cyclobacteriaceae
Flavobacteria bacterium ZL-3


Cytophagaceae
Flavobacteria bacterium ZL-4


Flammeovirgaceae
Flavobacteria endosymbiont of Homalodisca coagulata


unclassified Cytophagales
Flavobacteria symbiont 1 of Acromyrmcx otcospinosus


environmental samples
Flavobacteria symbiont 2 of Acromyrmex otcospinosus


uncultured Cytophagia bacterium
Flavobacteria symbiont 3 of Acromyrmex otcospinosus


Flavobacteriia
Flavobacteria symbiont 4 of Acromyrmex otcospinosus


Flavobacteriales
Flavobacteria symbiont 5 of Acromyrmex otcospinosus


B lattabacteiiaceae
Flavobacteriia bacterium limp mda_pilot_Jcvi 0014


Cryomorphaceae
marine bacterium MB TCI 357


Flavobacteriaceae
marine bacterium P99-3


Schleiferiaceae
Flavobacteria sp. MaPt5


unclassified Flavobacteriales
environmental samples


environmental samples
Flavobacteria bacterium enrichment culture clone SMEC3


unclassified Flavobacteriia
Flavobacteria bacterium enrichment culture clone YYS1


aquatic bacterium STS_R2A_06
Flavobacteria bacterium enrichment culture clone YYS3


Flavobacteria bacterium ‘BSD S1 20’
Flavobacteriia bacterium enrichment culture clone 1-4-3


Flavobacteria bacterium 7515
Flavobacteriia bacterium enrichment culture clone 2-1-3


Flavobacteria bacterium 7531
Flavobacteriia bacterium enrichment culture clone 2-3-2


Flavobacteria bacterium 7536
Flavobacteriia bacterium enrichment culture clone 2-3-3


Flavobacteria bacterium 7538
Flavobacteriia bacterium enrichment culture clone 2-4-3


Flavobacteria bacterium 7575
Flavobacteriia bacterium enrichment culture clone AB5


Flavobacteria bacterium 7583
uncultured bacterium #0319-8B8


Flavobacteria bacterium 7586
uncultured bacterium//0319-8J1


Flavobacteria bacterium b42
uncultured bacterium BURTON-13


Flavobacteria bacterium B6 ZZ-2008
uncultured bacterium BURTON-18


Flavobacteria bacterium BBFL7
uncultured bacterium BLTRTON-20


Flavobacteria bacterium BR4
uncultured bacterium BURTON-28


Flavobacteria bacterium CC-AMO-30D
uncultured bacterium BURTON-31


Flavobacteria bacterium Ellin6119
uncultured bacterium BURTON-3 8


Flavobacteria bacterium Ellin6120
uncultured bacterium BLTRTON-44


Flavobacteria bacterium FB1
uncultured bacterium BURTON-50


Flavobacteria bacterium HMD 1033
uncultured bacterium BURTON-52


Flavobacteria bacterium HMD 1041
uncultured bacterium BURTON-55


Flavobacteria bacterium HMD1051
uncultured bacterium CEEAR-5


Flavobacteria bacterium HTCC2962
uncultured bacterium ORGAN 1C-5


Flavobacteria bacterium IAJ6
uncultured bacterium ORGANIC-6


Flavobacteria bacterium Ib01
uncultured bacterium ORGANIC-7


Flavobacteria bacterium Ib002
uncultured bacterium TAYNAYA-16


Flavobacteria bacterium Ib003
uncultured bacterium TAYNAYA-4


Flavobacteria bacterium Ib004
uncultured bacterium TAYNAYA-5


Flavobacteria bacterium Ib005
uncultured bacterium TAYNAYA-6


Flavobacteria bacterium Ib006
uncultured bacterium TAYNAYA-7


Flavobacteria bacterium KF030
uncultured eubacterium 4-19


Flavobacteria bacterium MS024-2A
uncultured eubacterium 4-36


Flavobacteria bacterium MS024-3C
uncultured Flavobacteriia bacterium


Flavobacteria bacterium MS 190-IF
uncultured flavobacterium DGGE band PSBAC-1


Flavobacteria bacterium NAMAF006
Sphingobacteriia


Sphingobacteriaies

Cardinium endosymbiont of Culicoides iungchiensis



Chitinophagaceae

Cardinium endosymbiont of Culicoides ohmorii



Saprospiraceae

Cardinium endosymbiont of Culicoides peregrinus



Sphingobacteriaceae

Cardinium endosymbiont of Cybaeota nana



unclassified Sphingobacteriales

Cardinium endosymbiont of Cybaeus chauliodous



Sphingobacteriales genera incertae sedis

Cardinium endosymbiont of Cybaeus chaulodious



environmental samples

Cardinium endosymbiont of Cybaeus eutypus



unclassified Sphmgobacteriia

Cardinium endosymbiont of Cybaeus hesper



barley rhizosphere bacterium JJ-1452

Cardinium endosymbiont of Cybaeus morosus



barley rhizosphere bacterium JJ-1607

Cardinium endosymbiont of Cybaeus multnoma



barley rhizosphere bacterium JJ-1618

Cardinium endosymbiont of Cybaeus paralypropriapus



barley rhizosphere bacterium JJ-1649

Cardinium endosymbiont of Cybaeus penedenlatus



barley rhizosphere bacterium JJ-1870

Cardinium endosymbiont of Cybaeus reticulatus



barley rhizosphere bacterium JJ-1894

Cardinium endosymbiont of Cybaeus sanbruno



barley rhizosphere bacterium JJ-2060

Cardinium endosymbiont of Cybaeus signifcr



barley rhizosphere bacterium JJ-220

Cardinium endosymbiont of Cybaeus somesbar



barley rhizosphere bacterium JJ-2607

Cardinium endosymbiont of Cybaeus waynei



barley rhizosphere bacterium JJ-3208

Cardinium endosymbiont of Dermanyssus gallinae



barley rhizosphere bacterium JJ-3210

Cardinium endosymbiont of Encarsia hispida



barley rhizosphere bacterium JJ-3233

Cardinium endosymbiont of Encarsia inaron



barley rhizosphere bacterium J.T-3427

Cardinium endosymbiont of Encarsia pergandiella



barley rhizosphere bacterium JJ-3776

Cardinium endosymbiont of Eotetranychus suginamensis



barley rhizosphere bacterium JJ-394

Cardinium endosymbiont of Euidcs speciosa



barley rhizosphere bacterium JJ-4019

Caidinium endosymbiont of Formica cinerea



glacier bacterium FJS5

Cardinium endosymbiont of Harmalia sirokata



marine bacterium MSCT

Cardinium endosymbiont of Hemiberiesia paimae



Sphingobacteria bacterium 2790

Cardinium endosymbiont of Holocnemus pluchei



Sphingobacteria bacterium BC4

Caidinium endosymbiont of honey bee mite



Sphingobacteria bacterium Ellin6121

Cardinium endosymbiont of Howardia biclavis



Sphingobacteria bacterium GWS-BW-H154

Cardinium endosymbiont of Indozuriel dantur



Sphingobacteria bacterium GWS-BW-H159

Cardinium endosymbiont of Ixodes scapularis



Sphingobacteria bacterium JAM-BA0302

Cardinium endosymbiont of Leiobunum vittatum



Sphingobacteria bacterium ROi22

Cardinium endosymbiont of Lepidosaphes pinnaeformis



Sphingobacteria bacterium RYG

Cardinium endosymbiont of Leucaspis pusilla



Sphingobacteria bacterium SH-52

Cardinium endosymbiont of Nitocra spinipes



Sphingobacteria bacterium SKA50

Cardinium endosymbiont of Oceanaspidiotus spinosus



Sphingobacteria bacterium SKA51

Cardinium endosymbiont of Oedothorax gibbosus



Sphingobacteria bacterium WF20

Cardinium endosymbiont of Oedothorax retusus



Sphingobacteria bacterium WWH129

Cardinium endosymbiont of Oligonychus ilicis



environmental samples

Cardinium endosymbiont of Palinaspis quohogiformis



Sphingobacteria bacterium enrichment culture clone AB7

Cardinium endosymbiont of Pallulaspis ephedrae



Sphingobacteria bacterium enrichment culture DGGE band 8

Cardinium endosymbiont of Panonychus ulmi



Sphingobacteria bacterium enrichment culture DGGE band 9

Cardinium endosymbiont of Petrobia harti



uncultured Sphingobacteria bacterium

Cardinium endosymbiont of Phalangium opilio




Sunxiuqinia


Cardinium endosymbiont of Plagiomerus diaspidis




Sunxiuqinia elliptica


Cardinium endosymbiont of Poliaspis media




Sunxiuqinia sp. CAU1234


Cardinium endosymbiont of Protargionia larreae




Sunxiuqinia sp. JNU-J035


Cardinium endosymbiont of Rilacna triangularis




Sunxiuqinia sp. JNU-SGY008


Cardinium endosymbiont of Scaphoideus titanus




Sunxiuqinia sp. SCSIO N0430


Cardinium endosymbiont of Sogatella furcifera



unclassified Bacteroidetes

Cardinium endosymbiont of Tetranychus cinnabarinus




Bifissio


Cardinium endosymbiont of Tetranychus pucraricola




Bifissio spartinae


Cardinium endosymbiont of Tetranychus urticae



environmental samples

Cardinium endosymbiont of Tetranychus urticae red form A




Candidatus Amoebophilus


Cardinium endosymbiont of Tetranychus urticae red form B




Candidatus Amoebophilus asiaticus


Cardinium endosymbiont of Tetranychus urticae red form C



endosymbiont of Acanthamoeba sp. (Hungarian isolate)

Cardinium endosymbiont of Unaspis euonymi



environmental samples

Cardinium symbiont of Neoseiulus paspalivorus




Candidatus Cardinium


Candidatus Cardinium sp. Sigean4




Candidatus Cardinium hertigii


Cardinium endosymbiont of Anyphaenidae sp.




Cardinium endosymbiont of Abgrallaspis degenerata


Cardinium endosymbiont of Aonidomytilus sp.




Cardinium endosymbiont of Aleurodicus dispersus


Cardinium endosymbiont of Aphytis sp.




Cardinium endosymbiont of Amphitetranychus quercivorus


Cardinium endosymbiont of Araneidae sp.




Cardinium endosymbiont of Aspediotus paranerii


Cardinium endosymbiont of Brevipalpus sp.




Cardinium endosymbiont of Aspidiotus nerii


Cardinium endosymbiont of Chaetodactylus sp.




Cardinium endosymbiont of Bemisia tabaci


Cardinium endosymbiont of Leiobunum sp.




Cardinium endosymbiont of Bryobia rubrioculus


Cardinium endosymbiont of Marietta sp.




Cardinium endosymbiont of Bryobia sarothamni


Cardinium endosymbiont of Melanaspis sp.




Cardinium endosymbiont of Chionaspis heterophyllae


Cardinium endosymbiont of Prodigiaspis sp.




Cardinium endosymbiont of Culicoides arakawae


Cardinium endosymbiont of Pseudoparlatoria sp.




Cardinium endosymbiont of Rilaena sp.

bacterium Phenol-4



Cardinium endosymbiont of Salticidae sp.

bacterium SB 12



Cardinium endosymbiont of Tetragnathidae sp.

bacterium XB45



Cardinium endosymbiont of Theridiidae sp.

Bacteroidetes bacterium ‘10.5 MW-13’


environmental samples
Bacteroidetes bacterium ‘10.5 MW-17’



Candidatus Paenicardinium

Bacteroidetes bacterium ‘13.5 MW-13’



Candidatus Paenicardinium endonii

Bacteroidetes bacterium ‘13.5 MW-16’



Marinifilum

Bacteroidetes bacterium ‘14.5 MW-30’



Marinifilum fragile

Bacteroidetes bacterium ‘5.5 MW-14’



Marinifilum sp. CECT 7448

Bacteroidetes bacterium ‘5.6 MW-6’



Marinifilum sp. JNU-H032

Bacteroidetes bacterium ‘6.5 MW-11’



Marinifilum sp. JNU-H036

Bacteroidetes bacterium ‘7.3 MW-12’



Marinifilum sp. JNU-J034

Bacteroidetes bacterium ‘7.5 MW-10’



Marinifilum sp. KYW 585

Bacteroidetes bacterium ‘7.5 MW-12’


environmental samples
Bacteroidetes bacterium ‘8.3 MW-7



Prolixibacter

Bacteroidetes bacterium‘9.3 MW-13’



Prolixibacter bellariivorans

Bacteroidetes bacterium ‘Oral Taxon 274’


environmental samples
Bacteroidetes bacterium ‘PS-7’


truffle symbionts
Bacteroidetes bacterium 0-9



Tuber borcliii symbiont b-lORA

Bacteroidetes bacterium 109-13



Tuber borchii symbiont b-1 7BO

Bacteroidetes bacterium 1 IB



Tuber borchii symbiont b-1 BO

Bacteroidetes bacterium 13456



Tuber borchii symbiont b-Z43

Bacteroidetes bacterium 1 (MB) 12.9mbsf



Venteria

Bacteroidetes bacterium 20/6



Venteria marina

Bacteroidetes bacterium 21 5-60


unclassified Bacteroidetes (miscellaneous)
Bacteroidetes bacterium 215-9


abyssal strain AID
Bacteroidetes bacterium 23-9


abyssal strain AIII4
Bacteroidetes bacterium 2bG


Antarctic bacterium L2
Bacteroidetes bacterium 3-6


Antarctic bacterium R-7515
Bacteroidetes bacterium 37LGx-1


Antarctic bacterium R-7550
Bacteroidetes bacterium 37LGy-2


Antarctic bacterium R-7572
Bacteroidetes bacterium 4 C16 35


Antarctic bacterium R-7579
Bacteroidetes bacterium 4F6B


Antarctic bacterium R-7666
Bacteroidetes bacterium 5-4


Antarctic bacterium R-7933
Bacteroidetes bacterium 5-5


Antarctic bacterium R-8963
Bacteroidetes bacterium 6E


Antarctic bacterium R-9003
Bacteroidetes bacterium 7-11


Antarctic bacterium R-9033
Bacteroidetes bacterium 7 (MB) 12.9mbsf


Antarctic bacterium R-9217
Bacteroidetes bacterium 8 (MB) 12.9mbsf


Arctic sea ice bacterium AWS-4M1
Bacteroidetes bacterium A973


Arctic sea ice bacterium AWS-4M3
Bacteroidetes bacterium ABF3A


Arctic sea ice bacterium AWS-4M4
Bacteroidetes bacterium Acht4


Arctic sea ice bacterium AWS-4M5
Bacteroidetes bacterium AH23


Arctic sea ice bacterium AWS-4M6
Bacteroidetes bacterium AH26


Arctic sea ice bacterium AWS-4M7
Bacteroidetes bacterium AH7


Arctic sea ice bacterium AWS-4M8
Bacteroidetes bacterium AH8


Arctic sea ice bacterium AWS-4U1
Bacteroidetes bacterium AK43 6.1


Arctic sea ice bacterium AWS-6B2
Bacteroidetes bacterium AKB-K1-255


Arctic sea ice bacterium AWS-7B1
Bacteroidetes bacterium AL33 9.1


Arctic sea ice bacterium AWS-7B3
Bacteroidetes bacterium AL42 2.1


Arctic sea ice bacterium AWS-7B4
Bacteroidetes bacterium ALI-INI1


Arctic sea ice bacterium AWS-7BS
Bacteroidetes bacterium ALI-INI12


bacterium 1.3.10
Bacteroidetes bacterium ALI-INI24


bacterium 5.3.10
Bacteroidetes bacterium Anal


bacterium AG
Bacteroidetes bacterium Ana2


bacterium AH47
Bacteroidetes bacterium ANT9105


bacterium BA
Bacteroidetes bacterium ANT9285


bacterium BD
Bacteroidetes bacterium ARK1 0264


bacterium BE
Bacteroidetes bacterium ArSB


bacterium D21
Bacteroidetes bacteriumblbl


bacterium H-S3
Bacteroidetes bacterium b lb2


bacterium KHN36A
Bacteroidetes bacterium b lb3


bacterium Kml
Bacteroidetes bacterium BAL102


bacterium Km4
Bacteroidetes bacterium BAL103


bacterium Km5
Bacteroidetes bacterium BAL120


bacterium KmC
Bacteroidetes bacterium BAL138


bacterium ML24
Bacteroidetes bacterium BAL139


bacterium P16L8 41
Bacteroidetes bacterium BAL140


bacterium P2G231
Bacteroidetes bacterium BAL141


bacterium PB90-2
Bacteroidetes bacterium BAL142


Bacteroidetes bacterium BALI47
Bacteroidetes bacterium G4


Bacteroidetes bacterium BALI51
Bacteroidetes bacterium G8 24


Bacteroidetes bacterium BALI51.1
Bacteroidetes bacterium GCM36


Bacteroidetes bacterium BALI51.2
Bacteroidetes bacterium GCM63


Bacteroidetes bacterium BAL152
Bacteroidetes bacterium GCM65


Bacteroidetes bacterium BAL153
Bacteroidetes bacterium GCM68


Bacteroidetes bacterium BAL154
Bacteroidetes bacterium GCM69


Bacteroidetes bacterium BAL175
Bacteroidetes bacterium GM10


Bacteroidetes bacterium BALI76
Bacteroidetes bacterium GM14


Bacteroidetes bacterium BALI80
Bacteroidetes bacterium GM19


Bacteroidetes bacterium BALI92
Bacteroidetes bacterium GM24


Bacleroideles baclerium BAL210
Bacleroideles baclerium GM31


Bacteroidetes bacterium BAL214
Bacteroidetes bacterium GM34


Bacteroidetes bacterium BAL215
Bacteroidetes bacterium GM36


Bacteroidetes bacterium BAL216
Bacteroidetes bacterium GM51


Bacteroidetes bacterium BAL222
Bacteroidetes bacterium GM57


Bacteroidetes bacterium BAL223
Bacteroidetes bacterium GM61


Bacteroidetes bacterium BAL224
Bacteroidetes bacterium GM71


Bacteroidetes bacterium BAL232
Bacteroidetes bacterium GM80


Bacteroidetes bacterium BAL240
Bacteroidetes bacterium GMD13F04


Bacteroidetes bacterium BAL241
Bacteroidetes bacterium GMD1 5A07


Bacteroidetes bacterium BAL242
Bacteroidetes bacterium GMD16C04


Bacteroidetes bacterium BAL254
Bacteroidetes bacterium GMD16C10


Bacteroidetes bacterium BAL256
Bacteroidetes bacterium GMD37F7


Bacteroidetes bacterium BAL257
Bacteroidetes bacterium GMD38C4


Bacteroidetes bacterium BAL268
Bacteroidetes bacterium GMDJE10E6


Bacteroidetes bacterium BAL269
Bacteroidetes bacterium GMDsbC3


Bacteroidetes bacterium BAL273
Bacteroidetes bacterium GMDsbC7


Bacteroidetes bacterium BAL63
Bacteroidetes bacterium GMDsbM5


Bacteroidetes bacterium BAL64
Bacteroidetes bacterium GS


Bacteroidetes bacterium BAL65
Bacteroidetes bacterium GWS-BW-H4M


Bacteroidetes bacterium BAL81
Bacteroidetes bacterium GWS-BW-H70M


Bacteroidetes bacterium BAL84
Bacteroidetes bacterium H30


Bacteroidetes bacterium BAL87
Bacteroidetes bacterium HH42


Bacteroidetes bacterium BAL93
Bacteroidetes bacterium HNR18


Bacteroidetes bacterium BAL97
Bacteroidetes bacterium IIPC1


Bacteroidetes bacterium BC2TSA1F2
Bacteroidetes bacterium HY2


Bacteroidetes bacterium beta la-PC Ai-E3-2
Bacteroidetes bacterium HY3


Bacteroidetes bacterium beta2a-PCAi-E3-2
Bacteroidetes bacterium 1-116-1


Bacteroidetes bacterium C-l
Bacteroidetes bacterium II-116-5


Bacteroidetes bacterium C-l2
Bacteroidetes bacterium J2012s


Bacteroidetes bacterium C-l9
Bacteroidetes bacterium J2051s


Bacteroidetes bacterium C-3
Bacteroidetes bacterium J2117m


Bacteroidetes bacterium C-7
Bacteroidetes bacterium J879


Bacteroidetes bacterium CHli
Bacteroidetes bacterium Jbgl7


Bacteroidetes bacterium CH6i
Bacteroidetes bacterium Jbgl8


Bacteroidetes bacterium CHC10
Bacteroidetes bacterium Jbgl9


Bacteroidetes bacterium CHC2
Bacteroidetes bacterium Jbg20


Bacteroidetes bacterium CHNCT12
Bacteroidetes bacterium Jbg21


Bacteroidetes bacterium CK32 5.3
Bacteroidetes bacterium Jbg22


Bacteroidetes bacterium CN19M LM14
Bacteroidetes bacterium JC-3


Bacteroidetes bacterium CN3G2-10
Bacteroidetes bacterium JGI 0000113-A17


Bacteroidetes bacterium CN9 LM99
Bacteroidetes bacterium JGI 0000113-N05


Bacteroidetes bacterium CNC19
Bacteroidetes bacterium JGI 0001001-A08


Bacteroidetes bacterium CNTJ-914
Bacteroidetes bacterium JGI 0002002-N21


Bacteroidetes bacterium CNX-216
Bacteroidetes bacterium JGI 0002003-008


Bacteroidetes bacterium CSC16
Bacteroidetes bacterium JGI 0002005-G08


Bacteroidetes bacterium D295
Bacteroidetes bacterium JGI 0002005-110


Bacteroidetes bacterium E42
Bacteroidetes bacterium JGI 0002005-J14


Bacteroidetes bacterium EC2
Bacteroidetes bacterium JGI 0002005-K22


Bacteroidetes bacterium ectosymbiont of Rimicaris exoculata
Bacteroidetes bacterium JS5


Bacteroidetes bacterium Eg28
Bacteroidetes bacterium K2


Bacteroidetes bacterium EK-I72
Bacteroidetes bacterium K3


Bacteroidetes bacterium endosymbiont of Bemisia tabaci
Bacteroidetes bacterium K383


Bacteroidetes bacterium endosymbiont of Sogatella furcifera
Bacteroidetes bacterium K4


Bacteroidetes bacterium FH4
Bacteroidetes bacterium K5


Bacteroidetes bacterium FH5
Bacteroidetes bacterium K6-27


Bacteroidetes bacterium G13a-B
Bacteroidetes bacterium KILT1


Bacteroidetes bacterium G22
Bacteroidetes bacterium KJY


Bacteroidetes bacterium G33
Bacteroidetes bacterium Ko310


Bacteroidetes bacterium Ko510
Bacteroidetes bacterium oral taxon 281


Bacteroidetes bacterium Ko706
Bacteroidetes bacterium oral taxon 318


Bacteroidetes bacterium Ko710
Bacteroidetes bacterium oral taxon 320


Bacteroidetes bacterium KT JAC3043 cb 68
Bacteroidetes bacterium oral taxon 321


Bacteroidetes bacterium L2-109
Bacteroidetes bacterium oral taxon 365


Bacteroidetes bacterium LaBonte algl 1
Bacteroidetes bacterium oral taxon 436


Bacteroidetes bacterium LC9
Bacteroidetes bacterium oral taxon 503


Bacteroidetes bacterium LD83
Bacteroidetes bacterium oral taxon 505


Bacteroidetes bacterium LD84
Bacteroidetes bacterium oral taxon 507


Bacteroidetes bacterium LJ
Bacteroidetes bacterium oral taxon 509


Bacteroidetes bacterium LYH
Bacteroidetes bacterium oral taxon 511


Bacleroideles bacterium M-phe-1
Bacteroidetes bacterium oral taxon 516


Bacteroidetes bacterium M2
Bacteroidetes bacterium oral taxon B68


Bacteroidetes bacterium M3
Bacteroidetes bacterium oral taxon D27


Bacteroidetes bacterium M4
Bacteroidetes bacterium oral taxon E48


Bacteroidetes bacterium M5
Bacteroidetes bacterium oral taxon F31


Bacteroidetes bacterium M5H2
Bacteroidetes bacterium oral taxon F44


Bacteroidetes bacterium M6
Bacteroidetes bacterium oral taxon F60


Bacteroidetes bacterium M7
Bacteroidetes bacterium oral taxon F69


Bacteroidetes bacterium M775
Bacteroidetes bacterium oral taxon F70


Bacteroidetes bacterium MAO51
Bacteroidetes bacterium oral taxon G44


Bacteroidetes bacterium MA052
Bacteroidetes bacterium oral taxon G83


Bacteroidetes bacterium Mo-0.2plat-K3
Bacteroidetes bacterium ORNL_lUT_ORNL_28


Bacteroidetes bacterium Mo-0.2plat-K5
Bacteroidetes bacterium OS-21A


Bacteroidetes bacterium MOI 7
Bacteroidetes bacterium OS-26C


Bacteroidetes bacterium MO 18
Bacteroidetes bacterium P073B


Bacteroidetes bacterium M048
Bacteroidetes bacterium P2


Bacteroidetes bacterium M049
Bacteroidetes bacterium P3


Bacteroidetes bacterium M054
Bacteroidetes bacterium P3(2010)


Bacteroidetes bacterium MO LA 103
Bacteroidetes bacterium P373


Bacteroidetes bacterium MOLA 411
Bacteroidetes bacterium P4


Bacteroidetes bacterium MOLA 450
Bacteroidetes bacterium P4(2013)


Bacteroidetes bacterium MU1
Bacteroidetes bacterium PD4-MRL


Bacteroidetes bacterium MU2
Bacteroidetes bacterium PM13


Bacteroidetes bacterium MWH-CFBk5
Bacteroidetes bacterium PM24


Bacteroidetes bacterium Mwo 1
Bacteroidetes bacterium PM25


Bacteroidetes bacterium N03AW1
Bacteroidetes bacterium PM29


Bacteroidetes bacterium N04ML10
Bacteroidetes bacterium PMR-D


Bacteroidetes bacterium N04ML7
Bacteroidetes bacterium PP2


Bacteroidetes bacterium N04ML8
Bacteroidetes bacterium PPf50E2


Bacteroidetes bacterium N114
Bacteroidetes bacterium PPM04


Bacteroidetes bacterium NlmML10c
Bacteroidetes bacterium PS-KroKl


Bacteroidetes bacterium NlmML12
Bacteroidetes bacterium PS-T12W


Bacteroidetes bacterium NlmML3
Bacteroidetes bacterium R-38326


Bacteroidetes bacterium NlmML4
Bacteroidetes bacterium R-38398


Bacteroidetes bacterium N2
Bacteroidetes bacterium R-39049


Bacteroidetes bacterium N2yMLl
Bacteroidetes bacterium R0L5


Bacteroidetes bacterium N3mISl
Bacteroidetes bacterium R2-Dcc-MIB-3


Bacteroidetes bacterium N3mISlO
Bacteroidetes bacterium R2A10


Bacteroidetes bacterium N3mMLl
Bacteroidetes bacterium R2A103


Bacteroidetes bacterium N3mML6
Bacteroidetes bacterium R2A132


Bacteroidetes bacterium N83
Bacteroidetes bacterium R2A5


Bacteroidetes bacterium N90
Bacteroidetes bacterium R43


Bacteroidetes bacterium NQrnTS13
Bacteroidetes bacterium R634


Bacteroidetes bacterium NAB 18
Bacteroidetes bacterium R8-Ret-T12-1 Id


Bacteroidetes bacterium NeomS2D4
Bacteroidetes bacterium R8-Ret-T53-23g


Bacteroidetes bacterium NP-X
Bacteroidetes bacterium RAS63


Bacteroidetes bacterium O-O14
Bacteroidetes bacterium RBE2CD-I 32


Bacteroidetes bacterium O32B_LM98
Bacteroidetes bacterium RBE2CD-50


Bacteroidetes bacterium ONB11
Bacteroidetes bacterium RBE2CD-54


Bacteroidetes bacterium ONB 13
Bacteroidetes bacterium RD4.3


Bacteroidetes bacterium ONC1
Bacteroidetes bacterium RG1-1


Bacteroidetes bacterium ONC2
Bacteroidetes bacterium RI121


Bacteroidetes bacterium OR-1
Bacteroidetes bacterium RI269


Bacteroidetes bacterium OR-219
Bacteroidetes bacterium RL-C


Bacteroidetes bacterium OR-43
Bacteroidetes bacterium RM22


Bacteroidetes bacterium OR-53
Bacteroidetes bacterium RM23


Bacteroidetes bacterium oral taxon 272
Bacteroidetes bacterium RM69


Bacteroidetes bacterium oral taxon 274
Bacteroidetes bacterium RNC11


Bacteroidetes bacterium oral taxon 280
Bacteroidetes bacterium RNC12


Bacteroidetes bacterium RNC6
Bacteroidetes bacterium SCGC AAA043-M05


Bacteroidetes bacterium RP28
Bacteroidetes bacterium SCGC AAA043-N02


Bacteroidetes bacterium RX233
Bacteroidetes bacterium SCGC AAA043-O14


Bacteroidetes bacterium SI
Bacteroidetes bacterium SCGC AAA043-P05


Bacteroidetes bacterium S10/1
Bacteroidetes bacterium SCGC AAA076-B23


Bacteroidetes bacterium SI 0/2
Bacteroidetes bacterium SCGC AAA158-A05


Bacteroidetes bacterium SI 10(26)-1
Bacteroidetes bacterium SCGC AAA158-J09


Bacteroidetes bacterium SI 5-4
Bacteroidetes bacterium SCGC AAA160-A02


Bacteroidetes bacterium S22-33
Bacteroidetes bacterium SCGC AAA160-A08


Bacteroidetes bacterium S22-34
Bacteroidetes bacterium SCGC AAA160-A14


Bacteroidetes bacterium S22-35
Bacteroidetes bacterium SCGC AAA160-A21


Bacteroidetes bacterium S3
Bacteroidetes bacterium SCGC AAA160-B09


Bacteroidetes bacterium S7
Bacteroidetes bacterium SCGC AAA160-C05


Bacteroidetes bacterium S923
Bacteroidetes bacterium SCGC AAA160-D03


Bacteroidetes bacterium SAC2
Bacteroidetes bacterium SCGC AAA160-E07


Bacteroidetes bacterium SB27
Bacteroidetes bacterium SCGC AAA160-E08


Bacteroidetes bacterium SC-1
Bacteroidetes bacterium SCGC AAA160-E20


Bacteroidetes bacterium SCGC AAA008-C03
Bacteroidetes bacterium SCGC AAA160-F07


Bacteroidetes bacterium SCGC AAA015-O21
Bacteroidetes bacterium SCGC AAA160-F08


Bacteroidetes bacterium SCGC AAA023-B19
Bacteroidetes bacterium SCGC AAA160-F18


Bacteroidetes bacterium SCGC AAA023-E22
Bacteroidetes bacterium SCGC AAA160-GI0


Bacteroidetes bacterium SCGC AAA023-J07
Bacteroidetes bacterium SCGC AAA160-G14


Bacteroidetes bacterium SCGC AAA023-K17
Bacteroidetes bacterium SCGC AAA160-I16


Bacteroidetes bacterium SCGC AAA023-M10
Bacteroidetes bacterium SCGC AAA160-L03


Bacteroidetes bacterium SCGC AAA023-N17
Bacteroidetes bacterium SCGC AAA160-E04


Bacteroidetes bacterium SCGC AAA024-A13
Bacteroidetes bacterium SCGC AAA160-L09


Bacteroidetes bacterium SCGC AAA024-B16
Bacteroidetes bacterium SCGC AAA160-L15


Bacteroidetes bacterium SCGC AAA024-E18
Bacteroidetes bacterium SCGC AAA160-L18


Bacteroidetes bacterium SCGC AAA024-I08
Bacteroidetes bacterium SCGC AAA160-L19


Bacteroidetes bacterium SCGC AAA024-M07
Bacteroidetes bacterium SCGC AAA160-N02


Bacteroidetes bacterium SCGC AAA024-N18
Bacteroidetes bacterium SCGC AAA160-N18


Bacteroidetes bacterium SCGC AAA024-O02
Bacteroidetes bacterium SCGC AAA160-N19


Bacteroidetes bacterium SCGC AAA024-O05
Bacteroidetes bacterium SCGC AAA160-O17


Bacteroidetes bacterium SCGC AAA024-P05
Bacteroidetes bacterium SCGC AAA160-P02


Bacteroidetes bacterium SCGC AAA024-P11
Bacteroidetes bacterium SCGC AAA160-P09


Bacteroidetes bacterium SCGC AAA027-A23
Bacteroidetes bacterium SCGC AAA163-F15


Bacteroidetes bacterium SCGC AAA027-C18
Bacteroidetes bacterium SCGC AAA164-L19


Bacteroidetes bacterium SCGC AAA027-D09
Bacteroidetes bacterium SCGC AAA166-B07


Bacteroidetes bacterium SCGC AAA027-D11
Bacteroidetes bacterium SCGC AAA166-B16


Bacteroidetes bacterium SCGC AAA027-D14
Bacteroidetes bacterium SCGC AAA166-C08


Bacteroidetes bacterium SCGC AAA027-D22
Bacteroidetes bacterium SCGC AAA166-G16


Bacteroidetes bacterium SCGC AAA027-E17
Bacteroidetes bacterium SCGC AAA166-I10


Bacteroidetes bacterium SCGC AAA027-F10
Bacteroidetes bacterium SCGC AAA166-J04


Bacteroidetes bacterium SCGC AAA027-F20
Bacteroidetes bacterium SCGC AAA166-O05


Bacteroidetes bacterium SCGC AAA027-G08
Bacteroidetes bacterium SCGC AAA166-P21


Bacteroidetes bacterium SCGC AAA027-G09
Bacteroidetes bacterium SCGC AAA168-G15


Bacteroidetes bacterium SCGC AAA027-J08
Bacteroidetes bacterium SCGC AAA204-D06


Bacteroidetes bacterium SCGC AAA027-J16
Bacteroidetes bacterium SCGC AAA204-N13


Bacteroidetes bacterium SCGC AAA027-K06
Bacteroidetes bacterium SCGC AAA206-C09


Bacteroidetes bacterium SCGC AAA027-L16
Bacteroidetes bacterium SCGC AAA206-D16


Bacteroidetes bacterium SCGC AAA027-L18
Bacteroidetes bacterium SCGC AAA206-E07


Bacteroidetes bacterium SCGC AAA027-M16
Bacteroidetes bacterium SCGC AAA206-I05


Bacteroidetes bacterium SCGC AAA027-M20
Bacteroidetes bacterium SCGC AAA206-J13


Bacteroidetes bacterium SCGC AAA027-N15
Bacteroidetes bacterium SCGC AAA206-P04


Bacteroidetes bacterium SCGC AAA027-N20
Bacteroidetes bacterium SCGC AAA240-A06


Bacteroidetes bacterium SCGC AAA027-N21
Bacteroidetes bacterium SCGC AAA240-K15


Bacteroidetes bacterium SCGC AAA027-O02
Bacteroidetes bacterium SCGC AAA278-L16


Bacteroidetes bacterium SCGC AAA027-O08
Bacteroidetes bacterium SCGC AAA280-A07


Bacteroidetes bacterium SCGC AAA027-P03
Bacteroidetes bacterium SCGC AAA288-M09


Bacteroidetes bacterium SCGC AAA027-P14
Bacteroidetes bacterium SCGC AAA3O0-E18


Bacteroidetes bacterium SCGC AAA028-D13
Bacteroidetes bacterium SCGC AAA487-A10


Bacteroidetes bacterium SCGC AAA028-G19
Bacteroidetes bacterium SCGC AAA487-A14


Bacteroidetes bacterium SCGC AAA028-N16
Bacteroidetes bacterium SCGC AAA487-E10


Bacteroidetes bacterium SCGC AAA041-C10
Bacteroidetes bacterium SCGC AAA487-F20


Bacteroidetes bacterium SCGC AAA041-L03
Bacteroidetes bacterium SCGC AAA487-G14


Bacteroidetes bacterium SCGC AAA041-P16
Bacteroidetes bacterium SCGC AAA487-G22


Bacteroidetes bacterium SCGC AAA041-P17
Bacteroidetes bacterium SCGC AAA487-I22


Bacteroidetes bacterium SCGC AAA043-A05
Bacteroidetes bacterium SCGC AAA487-J05


Bacteroidetes bacterium SCGC AAA043-A17
Bacteroidetes bacterium SCGC AAA487-N10


Bacteroidetes bacterium SCGC AAA043-I08
Bacteroidetes bacterium SCGC AAA487-O06


Bacteroidetes bacterium SCGC AAA487-021
Bacteroidetes bacterium WD584


Bacteroidetes bacterium Schreyahn Kolonie Aster 14
Bacteroidetes bacterium WD59


Bacteroidetes bacterium SDX12
Bacteroidetes bacterium WD65


Bacteroidetes bacterium SED4
Bacteroidetes bacterium WD7


Bacteroidetes bacterium SF1
Bacteroidetes bacterium WD96


Bacteroidetes bacterium SF11
Bacteroidetes bacterium WF73


Bacteroidetes bacterium SF12
Bacteroidetes bacterium WII009150s


Bacteroidetes bacterium SF2
Bacteroidetes bacterium wo21


Bacteroidetes bacterium SF47
Bacteroidetes bacterium wo31


Bacteroidetes bacterium SM21
Bacteroidetes bacterium X3-d


Bacteroidetes bacterium SM23
Bacteroidetes bacterium ZHC17


Bacleroideles bacterium SM26
Bacteroidetes bacterium ZHC20


Bacteroidetes bacterium SM32
Bacteroidetes bacterium zj02


Bacteroidetes bacterium SM35
Bacteroidetes bacterium zj05


Bacteroidetes bacterium SM46
Bacteroidetes bacterium ZNB16


Bacteroidetes bacterium SM55
Bacteroidetes bacterium zo30


Bacteroidetes bacterium SM57
Bacteroidetes bacterium zo31


Bacteroidetes bacterium Smarlab 3301186
Bacteroidetes bacterium zo34


Bacteroidetes bacterium so23
Bacteroidetes bacterium zo35


Bacteroidetes bacterium so40
Bacteroidetes CHI2


Bacteroidetes bacterium so46
Bacteroidetes endosymbiont of Aspidiotus destmctor


Bacteroidetes bacterium SOMOC25
Bacteroidetes endosymbiont of Metaseiulus occidentalis


Bacteroidetes bacterium SOVtolO
Bacteroidetes oral taxon 274


Bacteroidetes bacterium SSI
Bacteroidetes symbiont of Icerya purcliasi


Bacteroidetes bacterium SSI 2
CFB group bacterium 22(2010)


Bacteroidetes bacterium SS14.29
CFB group bacterium A0653


Bacteroidetes bacterium SS14.30
CFB group bacterium A1002


Bacteroidetes bacterium SS14.31
CFB group bacterium GOBB3-210


Bacteroidetes bacterium SS4
CFB group bacterium GOBB3-308


Bacteroidetes bacterium SS9.12
CFB group bacterium GOBB3-CL142


Bacteroidetes bacterium SS9.38
CFB group bacterium ikaite c9


Bacteroidetes bacterium SSL04
CFB group bacterium kbal3f


Bacteroidetes bacterium SW15
CFB group bacterium kba28f


Bacteroidetes bacterium SW4
CFB group bacterium kbc05f


Bacteroidetes bacterium T213BY3
CFB group bacterium kbcl3


Bacteroidetes bacterium T4-KAD-strl
CFB group bacterium KbC5-B2


Bacteroidetes bacterium TDB-023
CFB group bacterium KbC5-B3


Bacteroidetes bacterium TDB-148
CFB group bacterium KbN1-B1


Bacteroidetes bacterium TDB-212
CFB group bacterium OI-l-l


Bacteroidetes bacterium Tf 235
CFB group bacterium OT-1-2


Bacteroidetes bacterium TH-G48
CFB group bacterium OT-1-4


Bacteroidetes bacterium TH-G49
CFB group bacterium OI-14-4


Bacteroidetes bacterium THS
CFB group bacterium OI-15-2


Bacteroidetes bacterium TRS1-A1
CFB group bacterium OI-20-1


Bacteroidetes bacterium TSW03CA1B
CFB group bacterium OI-9-1


Bacteroidetes bacterium U-3
CFB group bacterium SFLA10


Bacteroidetes bacterium ft_5
CFB group bacterium SI-9-3


Bacteroidetes bacterium ft_9
CFB-group bacterium QA93A


Bacteroidetes bacterium UBF2
cilia-associated respiratory baclerium


Bacteroidetes bacterium UBF3
cilia-associated respiratory bacterium 243-54


Bacteroidetes bacterium UBF5
cilia-associated respiratory bacterium 246-57


Bacteroidetes bacterium UBF7
cilia-associated respiratory bacterium 95-15405


Bacteroidetes bacterium UBF9
cilia-associated respiratory bacterium 96-1590


Bacteroidetes bacterium FTF2
cilia-associated respiratory bacterium 96-4763


Bacteroidetes bacterium fta/ps
cilia-associated respiratory bacterium Ml


Bacteroidetes bacterium VAS35
cilia-associated respiratory bacterium Rl


Bacteroidetes bacterium VAS36
cilia-associated respiratory bacterium R2


Bacteroidetes bacterium W-2003a
cilia-associated respiratory bacterium R3


Bacteroidetes bacterium W21
cilia-associated respiratory bacterium R4


Bacteroidetes bacterium WD195

Coleomegilla maculata male-killing endosymbiont



Bacteroidetes bacterium WD250
Cytophagales str. AND6


Bacteroidetes bacterium WD300
Cytophagales str. B6


Bacteroidetes bacterium WD309
Cytophagales str. KAT4


Bacteroidetes bacterium WD317
Cytophagales str. KAT5


Bacteroidetes bacterium WD385
Cytophagales str. KAT7


Bacteroidetes bacterium WD411
Cytophagales str. MBIC4147


Bacteroidetes bacterium WD501
Cytophagales str. MEDIO


Bacteroidetes bacterium WD509
Cytophagales str. MED 11


Bacteroidetes bacterium WD537
Cytophagales str. MED21


Bacteroidetes bacterium WD538
Cytophagales str. MED25


Cytophagales str. MED9
marine CFB-group bacterium MBIC04466


Cytophagales str. QSSC5-1
marine CFB-group bacterium MBIC04467


Elbe River snow isolate Iso8
marine CFB-group bacterium MBIC04468



Encarsia berlesei endosymbiont

marine CFB-group bacterium MBIC04469



Encarsia citrina endosymbiont

marine CFB-group bacterium MBIC04470



Encarsia hispida endosymbiont

marine CFB-group bacterium MBIC04471



Encarsia pergandiella asexual line endosymbiont

marine CFB-group bacterium MBIC04472



Encarsia pergandiella sexual line endosymbiont

marine CFB-group bacterium MBIC04473


endosymbiont of Aphytis lingnanensis
marine CFB-group bacterium MBIC04474


endosymbiont of Aspidiotus nerii
marine CFB-group bacterium MBIC04475


endosymbiont of Bemisia tabaci (biotype A)
marine CFB-group bacterium MBIC04476


endosymbiont of Brevipalpus californicus
marine CFB-group bacterium MBIC04477


endosymbiont of Brevipalpus lewisi
marine CFB-group bacterium MBIC04478


endosymbiont of Brevipalpus obovatus
marine CFB-group bacterium MBIC04487


endosymbiont of Brevipalpus phocnicis
marine CFB-group bacterium MBIC05204


endosymbiont of Diaspis echinocacti
marine CFB-group bacterium MBIC05558


endosymbiont of Dicranotropis hamata
marine CFB-group bacterium N43


endosymbiont of Encarsia lutea
marine CFB-group bacterium S3


endosymbiont of Encarsiella noyesi
marine CFB-group bacterium SB 12


endosymbiont of Metaseiulus occidentalis
marine CFB-group bacterium SB 15


endosymbiont of Oppiella nova
marine CFB-group bacterium SB 17


endosymbiont of Petrobia harti
marine CFB-group bacterium SB9


endosymbiont of Zigia versicolor
marine CFB-group bacterium SY009


enrichment culture LET-13
marine CFB-group bacterium SY010



Eubostrichus dianae epibacterium 1 60

marine CFB-group bacterium SY011


filamentous bacterium Plant 1 IsolOB
marine CF B-group bacterium SY013


filamentous bacterium Plantl Iso8
marine CFB-group bacterium SY022


freshwater obligate oligotroph IO-95
marine CFB-group bacterium SY023


gut bacterium S2 of Coptotermes formosanus
marine CFB-group bacterium SY024


marine bacterium 13731
marine CFB-group bacterium SY038


marine bacterium GY9
marine CFB-group bacterium SY040


marine bacterium MC8
marine CFB-group bacterium SY049


marine bacterium NBF6
marine CFB-group bacterium SY088


marine bacterium SIMO-IS 106
marine CFB-group bacterium SY121


marine bacterium SIMO-IS 107
marine CFB-group bacterium SY156


marine bacterium SIMO-IS 108
marine CFB-group bacterium SY186


marine bacterium SIMO-IS 109
marine CFB-group bacterium SY204


marine bacterium SIMO-IS 110
marine CFB-group bacterium SY221


marine bacterium SIMO-IS 111
marine CFB-group bacterium SY224


marine bacterium SIMO-IS 112
marine CFB-group bacterium SY226


marine bacterium SIMO-IS 113
marine CFB-group bacterium SY227


marine bacterium SIMO-IS 114
marine CFB-group bacterium SY229


marine bacterium SIMO-IS 115
marine CFB-group bacterium SY231


marine bacterium SIMO-IS 117
marine CFB-group bacterium SY244


marine bacterium SIMO-IS 118
marine psychrophile ACAM210


marine bacterium SIMO-IS 122
marine psychrophile ICO 54


marine bacterium SIMO-IS 129
marine psychrophile IC076


marine bacterium SIMO-IS 130
marine psychrophile IC148


marine bacterium SIMO-IS 132
marine psychrophile IC157


marine bacterium SIMO-IS 190
marine psychrophile IC 159


marine Bacteroidetes bacterium RS.Sph.009
marine psychrophile IC164


marine CFB-group bacterium MBIC01539
marine psychrophile SW17


marine CFB-group bacterium MBIC01599
monochloroacetic-acid-degrading bacterium ‘Band E’


marine CFB-group bacterium MBIC04441
monochloroacetic-acid-degrading bacterium ‘Band F’


marine CFB-group bacterium MBIC04442
obligately oligotrophic bacteria POC-121


marine CFB-group bacterium MBIC04443
obligately oligotrophic bacteria POC-122


marine CFB-group bacterium MBIC04444
obligately oligotrophic bacteria POC-8


marine CFB-group bacterium MBIC04445
obligately oligotrophic bacteria POCPN-73


marine CFB-group bacterium MB1C04446
obligately oligotrophic bacteria POCPN-74


marine CFB-group bacterium MBIC04447
saltmarsh sediment bacterium NRL-CB18


marine CFB-group bacterium MBIC04449
saltmarsh sediment bacterium NRL-CB19


marine CFB-group bacterium MBIC04450
saltmarsh sediment bacterium NRL-SS36


marine CFB-group bacterium MBIC04451
saltmarsh sediment bacterium NRL-TS20


marine CFB-group bacterium MBIC04452
Bacteroidetes sp. BG31


marine CFB-group bacterium MBIC04453
Bacteroidetes sp. MG12


marine CFB-group bacterium MBIC04454
Bacteroidetes sp. MG21


marine CFB-group bacterium MBIC04455
Bacteroidetes sp. OL02


marine CFB-group bacterium MBIC04456
Bacteroidetes sp. OM02


marine CFB-group bacterium MBIC04458
Bacteroidetes sp. OM05


marine CFB-group bacterium MBIC04465
Bacteroidetes symbiont of Osedax sp.


endosymbiont of Acanthamoeba sp. KA/K21
Bacteroidetes bacterium enrichment culture clone HB 77


endosymbiont of Aphytis sp. 3
Bacteroidetes bacterium enrichment culture clone HB 86


endosymbiont of Aphytis sp. 4
Bacteroidetes bacterium enrichment culture clone HB 97


endosymbiont of Balaustium sp.
Bacteroidetes bacterium enrichment culture clone LI


endosymbiont of Encarsia sp. 2
Bacteroidetes bacterium enrichment culture clone L11_2_53


endosymbiont of Encarsia sp. 3
Bacteroidetes bacterium enrichment culture clone L35B_118



Robbea sp. associated bacterium 4

Bacteroidetes bacterium enrichment culture clone L35B_121



Stilbonema sp. associated bacterium 2

Bacteroidetes bacterium enrichment culture clone L35B_13



Stilbonema sp. associated bacterium 3

Bacteroidetes bacterium enrichment culture clone L35B_144



Stilbonema sp. associated bacterium 4

Bacteroidetes bacterium enrichment culture clone L35B_21



Stilbonema sp. associated bacterium 5

Bacteroidetes bacterium enrichment culture clone L35B_50



Stilbonema sp. associated baclerium 6

Bacteroidetes bacterium enrichment culture clone L35B_72



Stilbonema sp. associated bacterium 7

Bacteroidetes bacterium enrichment culture clone L35B_83


unidentified bacterium WP13
Bacteroidetes bacterium enrichment culture clone L35B_95


Bacteroidetes Order II. Incertae sedis
Bacteroidetes bacterium enrichment culture clone L4


Rhodothermaceae
Bacteroidetes bacterium enrichment culture clone L55B-11



Rhodothermus

Bacteroidetes bacterium enrichment culture clone L55B-120



Rubricoecus

Bacteroidetes bacterium enrichment culture clone L55B-124



Salinibacter

Bacteroidetes bacterium enrichment culture clone L55B-131



Salisaeta

Bacteroidetes bacterium enrichment culture clone L55B-36


unclassified Rhodothermaceae
Bacteroidetes bacterium enrichment culture clone L55B-60


environmental samples
Bacteroidetes bacterium enrichment culture clone L55B-63


Bacteroidetes Order III. Incertae sedis
Bacteroidetes bacterium enrichment culture clone L55B-81



Thermonema

Bacteroidetes bacterium enrichment culture clone LiTJU-12-16



Thermonema lapsum

Bacteroidetes bacterium enrichment culture clone LiUU-12-52



Thermonema rossianum

Bacteroidetes bacterium enrichment culture clone LiUU-12-67


environmental samples
Bacteroidetes bacterium enrichment culture clone LiUU-12-81


environmental samples
Bacteroidetes bacterium enrichment culture clone LiTJU-15-341


Bacteriodetes bacterium enrichment culture clone AP-FeEnrich3
Bacteroidetes bacterium enrichment culture clone LiTJU-15-745


Bacteriodetes bacterium enrichment culture clone AP-FeEnrich4
Bacteroidetes bacterium enrichment culture clone LiUU-15-762


Bacteriodetes bacterium enrichment culture clone AP-FeEnrich5
Bacteroidetes bacterium enrichment culture clone LiUU-15-773


Bacteriodetes bacterium enrichment culture clone AP-FeEnrich6
Bacteroidetes bacterium enrichment culture clone LiTJU-15-794


Bacteroidetes bacterium enrichment culture C41
Bacteroidetes bacterium enrichment culture clone LiUU-16-310


Bacteroidetes bacterium enrichment culture clone 06-1235251-117
Bacteroidetes bacterium enrichment culture clone LiUU-16-703


Bacteroidetes bacterium enrichment culture clone 12
Bacteroidetes bacterium enrichment culture clone LiUU-16-715


Bacteroidetes bacterium enrichment culture clone 293MTBE
Bacteroidetes bacterium enrichment culture clone LiUU-16-729


Bacteroidetes bacterium enrichment culture clone 4.17a Bac band 1
Bacteroidetes bacterium enrichment culture clone LiUU-16-748


Bacteroidetes bacterium enrichment culture clone 4.17b Bac band 6
Bacteroidetes bacterium enrichment culture clone LiUU-16-756


Bacteroidetes bacterium enrichment culture clone 4.17b Bac band 7
Bacteroidetes bacterium enrichment culture clone LiUU-16-769


Bacteroidetes bacterium enrichment culture clone 4.17c Bac band 1
Bacteroidetes bacterium enrichment culture clone LiUU-16-794


Bacteroidetes bacterium enrichment culture clone AQ1-2
Bacteroidetes bacterium enrichment culture clone LiUU-17-320


Bacteroidetes bacterium enrichment culture clone AVCTGRB7A
Bacteroidetes bacterium enrichment culture clone LiUU-17-363


Bacteroidetes bacterium enrichment culture clone AVCTGRB9A
Bacteroidetes bacterium enrichment culture clone LiUU-17-386


Bacteroidetes bacterium enrichment culture clone AVCTGRB9B
Bacteroidetes bacterium enrichment culture clone LiUU-17-389


Bacteroidetes bacterium enrichment culture clone Bl-B-73
Bacteroidetes bacterium enrichment culture clone LiUU-17-737


Bacteroidetes bacterium enrichment culture clone B2
Bacteroidetes bacterium enrichment culture clone LiUU-17-770


Bacteroidetes bacterium enrichment culture clone B20
Bacteroidetes bacterium enrichment culture clone LiUU-17-793


Bacteroidetes bacterium enrichment culture clone 820(2010)
Bacteroidetes bacterium enrichment culture clone LiUU-17-795


Bacteroidetes bacterium enrichment culture clone CTBE
Bacteroidetes bacterium enrichment culture clone LiUU-18-303


CDB1001B01
Bacteroidetes bacterium enrichment culture clone LiUU-18-376


Bacteroidetes bacterium enrichment culture clone
Bacteroidetes bacterium enrichment culture clone LiUU-18-385


D2CL_Bac_16S_Clonc21
Bacteroidetes bacterium enrichment culture clone LiUU-18-392


Bacteroidetes bacterium enrichment culture clone
Bacteroidetes bacterium enrichment culture clone LiUU-18-713


D2CE_Bac_l 6S_Clone22
Bacteroidetes bacterium enrichment culture clone LiUU-1 8-728


Bacteroidetes bacterium enrichment culture clone
Bacteroidetes bacterium enrichment culture clone LiUU-18-740


D2CL_Bac_16S_Clone23
Bacteroidetes bacterium enrichment culture clone LiUU-18-765


Bacteroidetes bacterium enrichment culture clone DT-1962
Bacteroidetes bacterium enrichment culture clone LiUU-18-791


Bacteroidetes bacterium enrichment culture clone EAMFC7
Bacteroidetes bacterium enrichment culture clone NKiF2Sl


Bacteroidetes bacterium enrichment culture clone EE2-III
Bacteroidetes bacterium enrichment culture clone phylotype PI 1


Bacteroidetes bacterium enrichment culture clone EE2-IV
Bacteroidetes bacterium enrichment culture clone SI


Bacteroidetes bacterium enrichment culture clone EE2-V
Bacteroidetes bacterium enrichment culture clone SGLB4-2


Bacteroidetes bacterium enrichment culture clone EE2-VII
Bacteroidetes bacterium enrichment culture clone SGLB4-22


Bacteroidetes bacterium enrichment culture clone H12 2 55
Bacteroidetes bacterium enrichment culture clone VNC3B008


Bacteroidetes bacterium enrichment culture clone HB 102
Bacteroidetes bacterium enrichment culture clone WIP20mlH


Bacteroidetes bacterium enrichment culture clone HB 110
Bacteroidetes bacterium enrichment culture clone YFZ3


Bacteroidetes bacterium enrichment culture clone HB120
Bacteroidetes bacterium enrichment culture clone YFZ5


Bacteroidetes bacterium enrichment culture clone HB 53
Bacteroidetes bacterium enrichment culture clone YYS7


Bacteroidetes bacterium enrichment culture clone HB 61
Bacteroidetes bacterium enrichment culture DGGE band 39


Bacteroidetes bacterium enrichment culture clone IIB 63

Flexibacter maritimus-like bacterium S3C18



Bacteroidetes bacterium enrichment culture clone HB 71

Flexibacter maritimus-like bacterium S3C19




Flexibacter maritimus-like bacterium S3C20

uncultured bacterium 1AFESB3


marine eubacterium ‘DDGE band 3’
uncultured bacterium KC303


metal-contaminated soil clone K20-37
uncultured bacterium KC305


metal-contaminated soil clone K20-51
uncultured bacterium KC307


metal-contaminated soil clone K20-54
uncultured bacterium KC309


metal-contaminated soil clone K20-69
uncultured bacterium KC310


Bacteroidetes sp. oral clone FX069
uncultured bacterium KC312


uncultured bacterium #0319-2D9
uncultured bacterium KC318


uncultured bacterium #0319-6J10
uncultured bacterium KC319


uncultured bacterium #0319-7J6
uncultured bacterium KC320


uncultured bacterium #0319-7K9
uncultured bacterium KC328


uncultured bacterium #0319-8P19
uncultured bacterium KC429


uncultured bacterium B6
uncultured bacterium KC430


uncultured bacterium BA11
uncultured bacterium MKO1


uncultured bacterium BA12
uncultured bacterium MK02


uncultured bacterium BA13
uncultured bacterium MK03


uncultured bacterium BA2
uncultured bacterium MK04


uncultured bacterium BA5
uncultured bacterium MK05


uncultured bacterium BA6
uncultured bacterium MK06


uncultured bacterium BA7
uncultured bacterium MK07


uncultured bacterium RA8
uncultured bacterium MK08


uncultured bacterium BA9
uncultured bacterium MK09


uncultured bacterium BAx 1
uncultured bacterium MK10


uncultured bacterium BAx3
uncultured bacterium MK11


uncultured bacterium RAx4
uncultured bacterium MK12


uncultured bacterium BAxS
uncultured bacterium MK13


uncultured bacterium BS1
uncultured bacterium MK14


uncultured bacterium BS2
uncultured bacterium MK 15


uncultured bacterium BS3
uncultured bacterium MK16


uncultured bacterium RS4
uncultured bacterium MK17


uncultured bacterium BS5
uncultured bacterium MK18


uncultured bacterium BS7
uncultured bacterium MK19


uncultured bacterium BURTON-43
uncultured bacterium MK21


uncultured bacterium BLTRTON-6
uncultured bacterium MK22


uncultured bacterium FukuN104
uncultured bacterium MK23


uncultured bacterium FukuN21
uncultured bacterium MK24


uncultured bacterium FukuN23
uncultured bacterium mlel-2


uncultured bacterium FukuN24
uncultured bacterium O11Dl


uncultured bacterium FukuN3
uncultured bacterium PHOS-HC26


uncultured bacterium FukuN36
uncultured bacterium PIIOS-IIC44


uncultured bacterium FukuN47
uncultured bacterium PHOS-HC48


uncultured bacterium FukuN50
uncultured bacterium PHOS-HD32


uncultured bacterium FukuN54
uncultured bacterium PHOS-HE19


uncultured bacterium FukuN63
uncultured bacterium PHOS-HE25


uncultured bacterium FukuS140
uncultured bacterium PHOS-HE28


uncultured bacterium FukuS188
uncultured bacterium PHOS-HE31


uncultured bacterium FukuS20
uncultured bacterium PHOS-HE35


uncultured bacterium FukuS59
uncultured bacterium PHOS-HE45


uncultured baclerium GKS2-106
uncultured bacterium PHOS-HE51


uncultured bacterium GKS2-111
uncultured bacterium PHOS-HE61


uncultured bacterium GKS2-112
uncultured bacterium PHOS-HE62


uncultured bacterium GKS2-120
uncultured bacterium PHOS-HE67


uncultured bacterium GKS2-121
uncultured bacterium PHOS-HE77


uncultured bacterium GKS2-1 42
uncultured bacterium PHOS-HE79


uncultured bacterium GKS2-15
uncultured bacterium PHOS-HE99


uncultured bacterium GKS2-155
uncultured bacterium PL1


uncultured bacterium GKS2-164
uncultured bacterium Pn9


uncultured bacterium GKS2-1 9
uncultured bacterium TAYNAYA-1 7


uncultured bacterium GKS2-205
uncultured bacterium 1AYNAYA-27


uncultured bacterium GKS2-207
uncultured bacterium TX2


uncultured bacterium GKS2-208
uncultured bacterium TX3


uncultured bacterium GKS2-217
uncultured bacterium UASBTL54


uncultured bacterium GKS2-232
uncultured Bacteroidetes bacterium


uncultured bacterium GKS2-33
uncultured Bacteroidetes bacterium ‘SB 12-18 P41A3’


uncultured bacterium GKS2-63
uncultured Bay of Fundy bacterium BA10-1C


uncultured bacterium GKS2-7
uncultured Bay of Fundy bacterium BA10-1D


uncultured bacterium GKS2-70
uncultured Bay of Fundy bacterium BA10-1E


uncultured bacterium GKS2-88
uncultured CFB group bacterium B2M39


uncultured bacterium GR-WP33-44
uncultured CFB group bacterium B2M41


uncultured bacterium IAFESA5
uncultured CFB group bacterium B2M45


uncultured CFB group bacterium CtaxAus-22
uncultured Eake Michigan sediment bacterium LMBA1


uncultured CFB group bacterium CtaxAus-4
uncultured Lake Michigan sediment bacterium LMBA22


uncultured CFB group bacterium CtaxAus-7
uncultured Lake Michigan sediment bacterium LMBA29


uncultured CFB group bacterium CtaxMed-1
uncultured Lake Michigan sediment bacterium LMBA40


uncultured CFB group bacterium CtaxMed-15
uncultured Lake Michigan sediment bacterium LMBGA6-26


uncultured CFB group bacterium CtaxMed-18
uncultured marine bacterium AY-32


uncultured CFB group bacterium CtaxMed-37
uncultured marine bacterium AY-33


uncultured CFB group bacterium CtaxMed-46
uncultured marine bacterium AY-37


uncultured CFB group bacterium CtaxMed-5
uncultured marine bacterium AY-38


uncultured CFB group bacterium CtaxPhil-13
uncultured marine bacterium AY-56


uncultured CFB group bacterium CtaxTah-24
uncultured marine bacterium BY-19


uncultured CFB group bacterium EBAC322
uncultured marine baclerium BY-64


uncultured CFB group bacterium EBAC34
uncultured marine bacterium BY-65


uncultured CFB group bacterium EBAC391
uncultured marine bacterium BY-66


uncultured CFB group bacterium EBAC40
uncultured marine bacterium BY-7


uncultured CFB group bacterium EBAC43
uncultured marine bacterium BY-71


uncultured CFB group bacterium kpal3rc
uncultured marine bacterium pC2-105


uncultured CFB group bacterium kpc103f
uncultured marine bacterium pM-36


uncultured CFB group bacterium kpc 113rc
uncultured marine bacterium ZD0203


uncultured CFB group bacterium kpc 116rc
uncultured marine bacterium ZD0255


uncultured CFB group bacterium kpc26
uncultured marine bacterium ZD0403


uncultured CFB group bacterium kpc29
uncultured marine cytophaga DHB-3


uncultured CFB group bacterium kpjl lrc
uncultured marine Cytophaga MBE2


uncultured CFB group bacteriumkpjl67rc
uncultured marine Cytophaga MBE7


uncultured CFB group bacterium kpj254f
uncultured marine eubacterium OTU A


uncultured CFB group bacterium kpj43 If
uncultured marine eubacterium OTU B


uncultured CFB group bacterium kpj56rc
uncultured marine eubacterium OTU C


uncultured CFB group bacterium kpj 57rc
uncultured marine eubacterium OTU D


uncultured CFB group bacterium kpj 59rc
uncultured rumen bacterium 109pARRO


uncultured CFB group bacterium kpj60f
uncultured rumen bacterium 119pARRO


uncultured CFB groupbacterium NAC60-3
uncultured rumen bacterium 120pARRO


uncultured CFB-group bacterium 107ev
uncultured rumen bacterium 122pARRO


uncultured CFB-group bacterium 122ev
uncultured rumen bacterium 125cARRO


uncultured CFB-group bacterium 168ev
uncultured rumen bacterium 194pARRO


uncultured CFB-group bacterium 204ev
uncultured rumen bacterium 231cARRO


uncultured CFB-group bacterium 22ev
uncultured rumen bacterium 242pARRO


uncultured CFB-group bacterium 240ev
uncultured rumen bacterium 243pARRO


uncultured CFB-group bacterium 279ev
uncultured rumen bacterium 262pARRO


uncultured CFB-group bacterium 338ev
uncultured rumen bacterium 268pARRO


uncultured CFB-group bacterium 36ev
uncultured rumen bacterium 343pARRO


uncultured CFB-group bacterium 416ev
uncultured rumen bacterium 351pARRO


uncultured CFB-group bacterium 421ev
uncultured rumen bacterium 353pARRO


uncultured CFB-group bacterium 429ev
uncultured rumen bacterium 362cARRO


uncultured CFB-group bacterium 42ev
uncultured rumen bacterium 445pARRO


uncultured CFB-group bacterium 439ev
uncultured rumen bacterium 509cARRO


uncultured CFB-group bacterium 6 lev
uncultured rumen bacterium 509pARRO


uncultured CFB-group bacterium 65ev
uncultured rumen bacterium 523cARRO


uncultured CFB-group bacterium 87cv
uncultured rumen bacterium 588cARRO


uncultured CFB-group bacterium 93ev
uncultured rumen bacterium 5cARRO


uncultured coastal Alaskan Arctic bacterium AWS98-1 Id
uncultured rumen bacterium 626pARRO


uncultured coastal Alaskan Arctic bacterium AWS98-19d
uncultured rumen bacterium 62pARRO


uncultured coastal Alaskan Arctic bacterium AWS98-7d
uncultured rumen bacterium 635cARRO


uncultured cytophaga DCM-FREE-10
uncultured rumen bacterium C36cARRO


uncultured cytophaga DCM-FREE-35
uncultured rumen bacterium 637cARRO


uncultured eubacterium DgEPI2
uncultured rumen bacterium 648pARRO


uncultured eubacterium DgEPI6
uncultured rumen bacterium 68pARRO


uncultured eubacterium WCHA1-01
uncultured rumen bacterium 90cARRO


uncultured eubacterium WCFTA1 -1 4
uncultured rumen bacterium jlRRT


uncultured eubacterium WCHA2-47
uncultured rumen bacterium j2RRl


uncultured eubacterium WCHB 1-29
uncultured rumen bacterium j 3 RRI


uncultured eubacterium WCHB 1-32
uncultured rumen bacterium j4RRI


uncultured eubacterium WCHB 1-53
uncultured rumen bacterium jwl 1 RRI


uncultured eubacterium WsCH39
uncultured rumen bacterium jwl 2RRI


uncultured fecal bacterium TB101
uncultured rumen bacterium jwl 3RRI


uncultured fecal bacterium TB106
uncultured rumen bacterium jwl4RRI


uncultured fecal bacterium TB13
uncultured rumen bacterium jwl5RRI


uncultured fecal bacterium TB135
uncultured rumen bacterium jw!81RRI


uncultured fecal bacterium TB141
uncultured rumen bacterium jw2-7RRI


uncultured fecal bacterium TB146
uncultured rumen bacterium jw20RRI


uncultured fecal bacterium TB147
uncultured rumen bacterium jw22RRI


uncultured mmen bacterium jw25 RRI
unidentified Cytophagales OPB73


uncultured mmen bacterium jw26RRI
unidentified Cytophagales OPB88


uncultured mmen bacterium jw27RRI
unidentified Cytophagales OPS 1


uncultured rumen bacterium jw29RRI
unidentified eubacterium clone ESH167E


uncultured mmen bacterium jw30RRI
unidentified eubacterium clone ESH30-3


uncultured mmen bacterium jw5RRI
unidentified eubacterium clone LGA//1


uncultured mmen bacterium jw6RRI
unidentified eubacterium clone LGB#27


uncultured mmen bacterium jw7RRI
unidentified eubacterium clone PS#8


uncultured mmen bacterium jw&lRRI
unidentified eubacterium SCB37


uncultured mmen bacterium jw9RRl
unidentified eubacterium SCB38


uncultured sludge bacterium A12b
unidentified eubacterium SCB40


unidentified cytophagales groupA
unidentified eubacterium SCB41


unidentified cytophagales groupB
unidentified eubacterium SCB45


unidentified cytophagales groupG
unidentified eubacterium SCB49







Genus: Lactobacillus









Lactobacillus acetotolerans


Lactobacillus coleohominis




Lactobacillus acetotolerans JCM 3825


Lactobacillus coleohominis 101-4-CHN




Lactobacillus acidifarinae


Lactobacillus coleohominis DSM 14060




Lactobacillus acidipiscis


Lactobacillus collinoides




Lactobacillus acidipiscis KCTC 13900


Lactobacillus composti




Lactobacillus acidophilus


Lactobacillus concavus




Lactobacillus acidophilus 30SC


Lactobacillus coryniformis




Lactobacillus acidophilus ATCC 4796


Lactobacillus coryniformis subsp. coryniformis




Lactobacillus acidophilus CIP 76.13


Lactobacillus coryniformis subsp. coiyniformis CECT 5711




Lactobacillus acidophilus CIRM-BIA 442


Lactobacillus coryniformis subsp. coiyniformis KCTC 3167




Lactobacillus acidophilus CIRM-BIA 445


Lactobacillus coryniformis subsp. torquens




Lactobacillus acidophilus CRBIP 24179


Lactobacillus coryniformis subsp. torquens KCTC 3535




Lactobacillus acidophilus DSM 20242


Lactobacillus crispatus




Lactobacillus acidophilus DSM 9126


Lactobacillus crispatus 125-2-CHN




Lactobacillus acidophilus JV3179


Lactobacillus crispatus 2029




Lactobacillus acidophilus La-14


Lactobacillus crispatus 214-1




Lactobacillus acidophilus NCFM


Lactobacillus crispatus CTV-05




Lactobacillus agilis


Lactobacillus crispatus EX533959VC01




Lactobacillus algidus


Lactobacillus crispatus EX533959VC03




Lactobacillus alimentarius


Lactobacillus crispatus EX533959VC04




Lactobacillus alvei


Lactobacillus crispatus EX533959VC05




Lactobacillus alvi


Lactobacillus crispatus EX533959VC06




Lactobacillus amylolyticus


Lactobacillus crispatus EX533959VC07




Lactobacillus amylolyticus DSM 11664


Lactobacillus crispatus EX533959VC13




Lactobacillus amylophilus


Lactobacillus crispatus EX849587VC01




Lactobacillus amylophilus JCM 1125


Lactobacillus crispatus EX849587VC02




Lactobacillus amylotrophicus


Lactobacillus crispatus EX849587VC04




Lactobacillus amylovorus


Lactobacillus crispatus EX849587VC07




Lactobacillus amylovorus DSM 16698


Lactobacillus crispatus EX849587VC08




Lactobacillus amylovorus GRI. 1112


Lactobacillus crispatus FB049-03




Lactobacillus amylovoms GRL 1115


Lactobacillus crispatus FB077-07




Lactobacillus amylovoms GRL1118


Lactobacillus crispatus JCM 1185




Lactobacillus animalis


Lactobacillus crispatus JV-V01




Lactobacillus animalis KCTC 3501


Lactobacillus crispatus MV-lA-tJS




Lactobacillus animata


Lactobacillus crispatus MV-3A-FTS




Lactobacillus antri


Lactobacillus crispatus SJ-3C-US




Lactobacillus antri DSM 16041


Lactobacillus crispatus ST1




Lactobacillus apis


Lactobacillus crustorum




Lactobacillus apodemi


Lactobacillus crustorum FH4




Lactobacillus aquaticus


Lactobacillus curvatus




Lactobacillus aviarius


Lactobacillus curvatus CRL 705




Lactobacillus aviarius subsp. araffinosus


Lactobacillus curvatus F16 9




Lactobacillus aviarius subsp. aviarius


Lactobacillus curvatus JCM 1096




Lactobacillus backi


Lactobacillus curvatus WSU1




Lactobacillus bifermentans


Lactobacillus brevisimilis




Lactobacillus brantae


Lactobacillus buchneri




Lactobacillus brevis


Lactobacillus buchneri ATCC 11577




Lactobacillus brevis AG48


Lactobacillus buchneri CD034




Lactobacillus brevis ATCC 14869


Lactobacillus buchneri NRRL B-30929




Lactobacillus brevis ATCC 367


Lactobacillus cacaonum




Lactobacillus brevis KB290


Lactobacillus camelliae




Lactobacillus brevis subsp. gravesensis


Lactobacillus capillatus




Lactobacillus brevis subsp. gravesensis ATCC 27305


Lactobacillus casei group




Lactobacillus casei


Lactobacillus delbrueckii subsp. bulgaricus 2038




Lactobacillus casei 12A


Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842




Lactobacillus casei 21/1


Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365




Lactobacillus casei 32G


Lactobacillus delbrueckii subsp. bulgaricus CNCM 1-1519




Lactobacillus casei A2-362


Lactobacillus delbrueckii subsp. bulgaricus CNCM 1-1632




Lactobacillus casei ATCC 334


Lactobacillus delbrueckii subsp. bulgaricus ND02




Lactobacillus casei DD-II


Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4




Lactobacillus casei BL23


Lactobacillus delbrueckii subsp. delbrueckii




Lactobacillus casei CRF28


Lactobacillus delbrueckii subsp. indicus




Lactobacillus casei DN-114001


Lactobacillus delbrueckii subsp. lactis




Lactobacillus casei Lc-10


Lactobacillus delbrueckii subsp. lactis CRL581




Lactobacillus casei LC2W


Lactobacillus delbrueckii subsp. lactis DSM 20072




Lactobacillus casei LcA


Lactobacillus delbrueckii subsp. sunkii




Lactobacillus casei LcY


Lactobacillus delbrueckii ZN7a-9




Lactobacillus casei LOCK919


Lactobacillus dcxtrinicus




Lactobacillus casei Lpc-37


Lactobacillus diolivorans




Lactobacillus casei M36


Lactobacillus equi




Lactobacillus casei str. Zhang


Lactobacillus equicursoris




Lactobacillus casei subsp. casei ATCC 393


Lactobacillus equicursoris CIP 110162




Lactobacillus casei T71499


Lactobacillus equigenerosi




Lactobacillus casei UCD174


Lactobacillus fabifermentans




Lactobacillus casei UW1


Lactobacillus faeni




Lactobacillus casei UW4


Lactobacillus farciminis




Lactobacillus casei W56


Lactobacillus farciminis KCTC 3681




Lactobacillus paracasei


Lactobacillus farraginis




Lactobacillus paracasei COM0101


Lactobacillus fermentum




Lactobacillus paracasei subsp. paracasei


Lactobacillus fermentum 28-3-CHN




Lactobacillus paracasei subsp. tolerans


Lactobacillus fermentum 3872




Lactobacillus paracasei TXW


Lactobacillus fermentum ATCC 14931




Lactobacillus zeae


Lactobacillus fermentum CECT 5716




Lactobacillus zeae KCTC 3804


Lactobacillus fermentum F-6




Lactobacillus sp. LA601


Lactobacillus fermentum FTDC8312




Lactobacillus sp. Od.76


Lactobacillus fermentum IFO 3956




Lactobacillus catenefornis


Lactobacillus fermentum Lfl




Lactobacillus catenefornis DSM 20559


Lactobacillus fermentum MTCC 8711




Lactobacillus ceti


Lactobacillus floricola




Lactobacillus ceti DSM 22408


Lactobacillus riorum




Lactobacillus fuchuensis


Lactobacillus florum 2F




Lactobacillus futsaii


Lactobacillus florum 8D




Lactobacillus gallinarum


Lactobacillus fornicalis




Lactobacillus gasseri


Lactobacillus fructivorans




Lactobacillus gasseri 2016


Lactobacillus fructivorans KCTC 3543




Lactobacillus gasseri 202-4


Lactobacillus frumenti




Lactobacillus gasseri 224-1


Lactobacillus mali




Lactobacillus gasseri ADL-35 1


Lactobacillus mali KCTC 3596 = DSM 20444




Lactobacillus gasseri ATCC 33323


Lactobacillus manihotivorans




Lactobacillus gasseri CECT 5714


Lactobacillus mindensis




Lactobacillus gasseri EX336960VC01


Lactobacillus mobilis




Lactobacillus gasseri EX336960VC02


Lactobacillus mucosae




Lactobacillus gasseri EX336960VC03


Lactobacillus mucosae LM1




Lactobacillus gasseri EX336960VC06


Lactobacillus murinus




Lactobacillus gasseri EX336960VC07


Lactobacillus murinus ASF361




Lactobacillus gasseri EX336960VC10


Lactobacillus guizhouensis




Lactobacillus gasseri EX336960VC13


Lactobacillus halophilus




Lactobacillus gasseri EX336960VC15


Lactobacillus hammesii




Lactobacillus gasseri JV-V03


Lactobacillus hamsteri




Lactobacillus gasseri K7


Lactobacillus harbinensis




Lactobacillus gasseri MV-22


Lactobacillus harbinensis DSM 16991




Lactobacillus gasseri SJ-9E-US


Lactobacillus hayakitensis




Lactobacillus gasseri SV-16A-US


Lactobacillus helveticus




Lactobacillus gastricus


Lactobacillus helveticus CIRM-BIA 101




Lactobacillus gastricus PS3


Lactobacillus helveticus CIRM-BIA 103




Lactobacillus genomosp. CT


Lactobacillus helveticus CIRM-BIA 104




Lactobacillus genomosp. C2


Lactobacillus helveticus CIRM-BIA 951




Lactobacillus ghanensis


Lactobacillus helveticus CIRM-BIA 953




Lactobacillus gigeriorum


Lactobacillus helveticus CNRZ32




Lactobacillus gigeriorum CRBIP 24.85


Lactobacillus helveticus DPC 4571




Lactobacillus graminis


Lactobacillus helveticus DSM 20075




Lactobacillus delbrueckii


Lactobacillus helveticus 1110




Lactobacillus delbrueckii subsp. bulgaricus


Lactobacillus helveticus H9




Lactobacillus helveticus MTCC 5463


Lactobacillus kunkeei




Lactobacillus helveticus R0052


Lactobacillus larvae




Lactobacillus helveticus subsp. jugurti


Lactobacillus leichmannii




Lactobacillus heterohiochii


Lactobacillus letivazi




Lactobacillus hilgardii


Lactobacillus lindneri




Lactobacillus hilgardii ATCC 8290


Lactobacillus malefermentans




Lactobacillus hokkaidonensis


Lactobacillus malefermentans KCTC 3548




Lactobacillus hominis


Lactobacillus sunkii




Lactobacillus hominis CRBIP 24.179


Lactobacillus taiwanensis




Lactobacillus homohiochii


Lactobacillus thailandensis




Lactobacillus hordei


Lactobacillus tucceti




Lactobacillus iatae


Lactobacillus ultunensis




Lactobacillus iners


Lactobacillus ultunensis DSM 16047




Lactobacillus iners AB-1


Lactobacillus uvarum




Lactobacillus iners ACS-070-V-Col3


Lactobacillus vaccinostcrcus




Lactobacillus iners ATCC 55195


Lactobacillus vaginalis




Lactobacillus iners DSM 13335


Lactobacillus vaginalis ATCC 49540




Lactobacillus iners LactinV OlVl-a


Lactobacillus vaginalis EX336960VC05




Lactobacillus iners LactinV 03Vl-b


Lactobacillus vaginalis EX336960VC11




Lactobacillus iners LactinV 09V1-C


Lactobacillus vaginalis EX336960VC12




Lactobacillus iners LactinV 11VI-d


Lactobacillus vermiforme




Lactobacillus iners LEAF 2052A-d


Lactobacillus versmoldensis




Lactobacillus iners LEAF 2053A-b


Lactobacillus versmoldensis KCTC 3814




Lactobacillus iners LEAF 2062A-hl


Lactobacillus vini




Lactobacillus iners LEAF 3008A-a


Lactobacillus vini DSM 20605




Lactobacillus iners SPIN 1401G


Lactobacillus vini JP7.8.9




Lactobacillus iners SPIN 2503V10-D


Lactobacillus zymae




Lactobacillus iners UPII 143-D


Lactobacillus sp.




Lactobacillus iners UPII 60-B


Lactobacillus sp. O-C-2




Lactobacillus ingluviei


Lactobacillus sp. 1-3-3




Lactobacillus ingluviei str. Autruche 4


Lactobacillus sp. 1.1424




Lactobacillus insectis


Lactobacillus nagelii




Lactobacillus intermedius


Lactobacillus namurensis




Lactobacillus intestinalis


Lactobacillus nantensis




Lactobacillus japonicus


Lactobacillus nasuensis




Lactobacillus jensenii


Lactobacillus nodensis




Lactobacillus jensenii 115-3-CHN


Lactobacillus nodensis NBRC 107160




Lactobacillus jensenii 1153


Lactobacillus odoratitoflii




Lactobacillus jensenii 208-1


Lactobacillus oeni




Lactobacillus jensenii 269-3


Lactobacillus oligofermentans




Lactobacillus jensenii 27-2-CHN


Lactobacillus oligofermentans LMG 22743




Lactobacillus jensenii EX533959VC02


Lactobacillus oris




Lactobacillus jensenii EX849587VC03


Lactobacillus oris F0423




Lactobacillus jensenii EX849587VC05


Lactobacillus oris PB013-T2-3




Lactobacillus jensenii EX849587VC06


Lactobacillus oryzae




Lactobacillus jensenii JV-V16


Lactobacillus otakiensis




Lactobacillus jensenii MD HE-70(2)


Lactobacillus otakiensis JCM 15040




Lactobacillus jensenii SJ-7A-US


Lactobacillus ozcnsis




Lactobacillus johnsonii


Lactobacillus panis




Lactobacillus johnsonii 135-1 -CHN


Lactobacillus pantheris




Lactobacillus johnsonii 16


Lactobacillus parabrevis




Lactobacillus johnsonii ATCC 33200


Lactobacillus parabrevis ATCC 53295




Lactobacillus johnsonii DPC 6026


Lactobacillus parabuchneii




Lactobacillus johnsonii FT9785


Lactobacillus paracollinoides




Lactobacillus johnsonii NCC 533


Lactobacillus parafarraginis




Lactobacillus johnsonii pfOl


Lactobacillus parafarraginis F0439




Lactobacillus kalixensis


Lactobacillus parakefiri




Lactobacillus kefiranofaciens


Lactobacillus paralimentarius




Lactobacillus kefiranofaciens subsp. kefiranofaciens


Lactobacillus parapiantarum




Lactobacillus kefiranofaciens subsp. kefirgranum


Lactobacillus pasteurii




Lactobacillus kefiranofaciens ZW3


Lactobacillus pasteurii CRBIP 24.76




Lactobacillus kefiri


Lactobacillus pentosus




Lactobacillus kefiri JCM 5818


Lactobacillus pentosus IG1




Lactobacillus kimchicus


Lactobacillus pentosus KCA1




Lactobacillus kimchicus JCM 15530


Lactobacillus pentosus MP-10




Lactobacillus kimchiensis


Lactobacillus perolens




Lactobacillus kimchii


Lactobacillus plantarum




Lactobacillus kisonensis


Lactobacillus plantarum 16




Lactobacillus kisonensis F0435


Lactobacillus plantarum 2025




Lactobacillus kitasatonis


Lactobacillus plantarum 2165




Lactobacillus plantarum 4_3


Lactobacillus mminis




Lactobacillus plantamm AY01


Lactobacillus mminis ATCC 25644




Lactobacillus plantamm CMPG5300


Lactobacillus mminis ATCC 27782




Lactobacillus plantarum DOMLa


Lactobacillus mminis SPM0211




Lactobacillus plantamm EGD-AQ4


Lactobacillus saerimneri




Lactobacillus plantamm IPLA88


Lactobacillus saerimneri 30a




Lactobacillus plantamm JDM1


Lactobacillus saerimneri DSM 16049




Lactobacillus plantarum subsp. argentoratensis


Lactobacillus sakei




Lactobacillus plantamm subsp. plantarum


Lactobacillus sakei dgh6




Lactobacillus plantamm subsp. plantamm ATCC 14917


Lactobacillus sakei L45




Lactobacillus plantamm subsp. plantarum KCA-1


Lactobacillus sakei subsp. carnosus




Lactobacillus plantarum subsp. plantarum NC8


Lactobacillus sakei subsp. carnosus DSM 15831




Lactobacillus plantamm subsp. plantamm P-8


Lactobacillus sakei subsp. sakei




Lactobacillus plantamm subsp. plantamm R0403


Lactobacillus sakei subsp. sakei 23K




Lactobacillus plantamm subsp. plantamm ST-III


Lactobacillus sakei subsp. sakei LS25




Lactobacillus plantarum UCMA 3037


Lactobacillus salivarius




Lactobacillus plantamm WCFS1


Lactobacillus salivarius ACS-116-V-Col5a




Lactobacillus plantamm ZJ316


Lactobacillus salivarius ATCC 11741




Lactobacillus pobuzihii


Lactobacillus salivarius B-30514




Lactobacillus pobuzihii E100301


Lactobacillus salivarius CECT 5713




Lactobacillus pontis


Lactobacillus salivarius CELA2




Lactobacillus psittaci


Lactobacillus salivarius cp400




Lactobacillus psittaci DSM 15354


Lactobacillus salivarius DPC 6502




Lactobacillus rapi


Lactobacillus salivarius GJ-24




Lactobacillus rennini


Lactobacillus salivarius NTAS840




Lactobacillus reuteri


Lactobacillus salivarius SMXD51




Lactobacillus reuteri 100-23


Lactobacillus salivarius str. Ren




Lactobacillus reuteri 1063


Lactobacillus salivarius UCC118




Lactobacillus reuteri ATCC 53608


Lactobacillus sanfranciscensis




Lactobacillus reuteri CF48-3A


Lactobacillus sanfranciscensis TMW 1.1304




Lactobacillus reuteri DSM 20016


Lactobacillus saniviri




Lactobacillus reuteri F275


Lactobacillus satsumensis




Lactobacillus reuteri 15007


Lactobacillus secaliphilus




Lactobacillus reuteri JCM 1112


Lactobacillus senioris




Lactobacillus reuteri lpuph


Lactobacillus senmaizukei




Lactobacillus reuteri mlc3


Lactobacillus senmaizukei NBRC 103853




Lactobacillus reuteri MM2-2


Lactobacillus sharpeae




Lactobacillus reuteri MM2-3


Lactobacillus sharpeae JCM 1186




Lactobacillus reuteri MM4-1A


Lactobacillus shenzhenensis




Lactobacillus reuteri SD2112


Lactobacillus shenzhenensis LY-73




Lactobacillus reuteri TD1


Lactobacillus silagei




Lactobacillus rhamnosus


Lactobacillus siliginis




Lactobacillus rhamnosus 2166


Lactobacillus similis




Lactobacillus rhamnosus ATCC 21052


Lactobacillus similis JCM 2765




Lactobacillus rhamnosus ATCC 8530


Lactobacillus spicheri




Lactobacillus rhamnosus CASL


Lactobacillus sucicola




Lactobacillus rhamnosus CRL1505


Lactobacillus suebicus




Lactobacillus rhamnosus DSM 14870


Lactobacillus suebicus KCTC 3549




Lactobacillus rhamnosus GG


Lactobacillus sp. 14.2.14




Lactobacillus rhamnosus LMG 25859


Lactobacillus sp. 14.2.15




Lactobacillus rhamnosus LMG 27229


Lactobacillus sp. 14.2.18




Lactobacillus rhamnosus HN001


Lactobacillus sp. 14.2.20




Lactobacillus rhamnosus K32


Lactobacillus sp. 14.2.30




Lactobacillus rhamnosus L31


Lactobacillus sp. 1 4.2.31




Lactobacillus rhamnosus L33


Lactobacillus sp. 14.2.33




Lactobacillus rhamnosus L34


Lactobacillus sp. 14.2.37




Lactobacillus rhamnosus L35


Lactobacillus sp. 14.2.39




Lactobacillus rhamnosus Ec 705


Lactobacillus sp. 14.2.4




Lactobacillus rhamnosus LMS2-1


Lactobacillus sp. 14.2.41




Lactobacillus rhamnosus LOCK900


Lactobacillus sp. 14.2.46




Lactobacillus rhamnosus LOCK908


Lactobacillus sp. 14.2.48




Lactobacillus rhamnosus LRHMDP2


Lactobacillus sp. 14.2.9




Lactobacillus rhamnosus LRHMDP3


Lactobacillus sp. 14.8.15




Lactobacillus rhamnosus MSUIS1


Lactobacillus sp. 14.8.19




Lactobacillus rhamnosus MTCC 5462


Lactobacillus sp. 14.8.23




Lactobacillus rhamnosus NBRC 3425


Lactobacillus sp. 14.8.24




Lactobacillus rhamnosus R0011


Lactobacillus sp. 14.8.36




Lactobacillus rogosae


Lactobacillus sp. 14.8.40




Lactobacillus rossiae


Lactobacillus sp. 14.8.43




Lactobacillus rossiae DSM 15814


Lactobacillus sp. 14.8.44




Lactobacillus sp. 14.8.6


Lactobacillus sp. 7.8.26




Lactobacillus sp. 14.8.7


Lactobacillus sp. 7.8.27




Lactobacillus sp. 14B10


Lactobacillus sp. 7.8.33




Lactobacillus sp. 166


Lactobacillus sp. 7.8.6




Lactobacillus sp. 16DCCH01MX


Lactobacillus sp. 70811




Lactobacillus sp. 18BSM


Lactobacillus sp. 70819




Lactobacillus sp. 19-2


Lactobacillus sp. 71




Lactobacillus sp. 19DCCH01MX


Lactobacillus sp. 711




Lactobacillus sp. 1L


Lactobacillus sp. 100-23




Lactobacillus sp. 20(2010)


Lactobacillus sp. 100-5




Lactobacillus sp. 2011 Ileo VSA CI


Lactobacillus sp. 11050




Lactobacillus sp. 2011 Ileo VSA C5


Lactobacillus sp. 11102




Lactobacillus sp. 2011 Ileo VSA D2


Lactobacillus sp. 120-6-20




Lactobacillus sp. 2011 Ileo VSA E2


Lactobacillus sp. 12IB




Lactobacillus sp. 201 l_Oral_VSA C7


Lactobacillus sp. 123B




Lactobacillus sp. 20326H4L1


Lactobacillus sp. 14-3-19




Lactobacillus sp. 24DCCH01 MX


Lactobacillus sp. 14.2.12




Lactobacillus sp. 3-6


Lactobacillus sp. 14.2.13




Lactobacillus sp. 3.1.1


Lactobacillus sp. Anhor4




Lactobacillus sp. 3.2.22


Lactobacillus sp. Aiilioto7




Lactobacillus sp. 3.2.35


Lactobacillus sp. Anhoto8




Lactobacillus sp. 3.8.18


Lactobacillus sp. Anuhmtol3




Lactobacillus sp. 3.8.40


Lactobacillus sp. Anuhmto23




Lactobacillus sp. 3.8.42


Lactobacillus sp. ARB2




Lactobacillus sp. 3.8.8


Lactobacillus sp. Arif Mardan-




Lactobacillus sp. 30.2.8


Lactobacillus sp. AS5




Lactobacillus sp. 30A


Lactobacillus sp. ASF360




Lactobacillus sp. 30BPM


Lactobacillus sp. ATCC 8291




Lactobacillus sp. 326


Lactobacillus sp. Atm5




Lactobacillus sp. 34-10B


Lactobacillus sp. Autruche 4




Lactobacillus sp. 39D2CCL02MX


Lactobacillus sp. Autruche 5




Lactobacillus sp. 39DCCL02MX


Lactobacillus sp. B 225




Lactobacillus sp. 3AB9


Lactobacillus sp. B 226




Lactobacillus sp. 3b


Lactobacillus sp. B 227




Lactobacillus sp. 3d


Lactobacillus sp. B 228




Lactobacillus sp. 3F11


Lactobacillus sp. B 229




Lactobacillus sp. 41DCCL02MX


Lactobacillus sp. B 230




Lactobacillus sp. 43D2CCL02MX


Lactobacillus sp. B 236




Lactobacillus sp. 43DCCL02MX


Lactobacillus sp. B 237




Lactobacillus sp. 45


Lactobacillus sp. B 238




Lactobacillus sp. 459


Lactobacillus sp. B 239




Lactobacillus sp. 46-211


Lactobacillus sp. B 245




Lactobacillus sp. 47DCCL02MX


Lactobacillus sp. B 246




Lactobacillus sp. 49DCCL02MX


Lactobacillus sp. B 247




Lactobacillus sp. 4B13


Lactobacillus sp. B 248




Lactobacillus sp. 4B31


Lactobacillus sp. B 249




Lactobacillus sp. 5-1-2


Lactobacillus sp. B 250




Lactobacillus sp. 52A


Lactobacillus sp. B 251




Lactobacillus sp. 54DCEP01MX


Lactobacillus sp. B 252




Lactobacillus sp. 59DCEP01MX


Lactobacillus sp. B 253




Lactobacillus sp. 5D32


Lactobacillus sp. B 254




Lactobacillus sp. 6225121


Lactobacillus sp. B 255




Lactobacillus sp. 6225335


Lactobacillus sp. B10




Lactobacillus sp. 6225616


Lactobacillus sp. B13




Lactobacillus sp. 62DACEP01MX


Lactobacillus sp. B16




Lactobacillus sp. 66c


Lactobacillus sp. B164




Lactobacillus sp. 6D3


Lactobacillus sp. B18




Lactobacillus sp. 7-19


Lactobacillus sp. B2




Lactobacillus sp. 7.2.21


Lactobacillus sp. B21




Lactobacillus sp. 7.2.29


Lactobacillus sp. B22




Lactobacillus sp. 7.2.33


Lactobacillus sp. B3




Lactobacillus sp. 7.2.35


Lactobacillus sp. B3(2009)




Lactobacillus sp. 7.2.36


Lactobacillus sp. B4




Lactobacillus sp. 7.2.40


Lactobacillus sp. B5




Lactobacillus sp. 7.2.46


Lactobacillus sp. B5406




Lactobacillus sp. 7.2.48


Lactobacillus sp. B5407




Lactobacillus sp. 7.2.49


Lactobacillus sp. B6




Lactobacillus sp. 7.2.50


Lactobacillus sp. B6(2012)




Lactobacillus sp. 7.8.15


Lactobacillus sp. B7




Lactobacillus sp. 7.8.17


Lactobacillus sp. B8




Lactobacillus sp. B9


Lactobacillus sp. Adhmtol




Lactobacillus sp. BB9


Lactobacillus sp. Adhmtol5




Lactobacillus sp. BBDP73


Lactobacillus sp. Adhmtol9




Lactobacillus sp. BCRC16000


Lactobacillus sp. Adhmto21




Lactobacillus sp. BH0900


Lactobacillus sp. Adporo6




Lactobacillus sp. 713


Lactobacillus sp. AF20(2010)




Lactobacillus sp. 74(2011)


Lactobacillus sp. AF26(2010)




Lactobacillus sp. 7 1 47FAA


Lactobacillus sp. Afhotl




Lactobacillus sp. 7b


Lactobacillus sp. AFL13-2




Lactobacillus sp. 8525126


Lactobacillus sp. AFL17-5




Lactobacillus sp. 88


Lactobacillus sp. AFL18-2




Lactobacillus sp. 8BAM


Lactobacillus sp. AFL18-5




Lactobacillus sp. 9C4


Lactobacillus sp. AFL19-3




Lactobacillus sp. 9C6


Lactobacillus sp. Afpor8




Lactobacillus sp. 9D10


Lactobacillus sp. Afpotol3




Lactobacillus sp. 9D6


Lactobacillus sp. Afpolol4




Lactobacillus sp. 9D8


Lactobacillus sp. Afpoto7




Lactobacillus sp. AA


Lactobacillus sp. AI197




Lactobacillus sp. Aabbtol6


Lactobacillus sp. AI460




Lactobacillus sp. Aabbto7


Lactobacillus sp. AI461




Lactobacillus sp. Aahmrol5


Lactobacillus sp. AK11 3




Lactobacillus sp. Aahmtol2


Lactobacillus sp. AK21




Lactobacillus sp. Aahonto7


Lactobacillus sp. Akhmbto4




Lactobacillus sp. ABO 15


Lactobacillus sp. Akhmr6




Lactobacillus sp. AB032


Lactobacillus sp. Akhmro 1




Lactobacillus sp. ABO 5


Lactobacillus sp. Akhmtol8




Lactobacillus sp. ABO 5-1


Lactobacillus sp. Aldimto2




Lactobacillus sp. AB06


Lactobacillus sp. Akpobrol




Lactobacillus sp. ab2


Lactobacillus sp. Akporo7




Lactobacillus sp. ab3-wl


Lactobacillus sp. AL2




Lactobacillus sp. AB511


Lactobacillus sp. AL5




Lactobacillus sp. AB511-2


Lactobacillus sp. Alhmlto4




Lactobacillus sp. AB5115-9


Lactobacillus sp. Alhm2tol 1




Lactobacillus sp. AB5216-2


Lactobacillus sp. Alhonto3




Lactobacillus sp. AB523-1


Lactobacillus sp. Alhonto4




Lactobacillus sp. AB5252


Lactobacillus sp. Am 09




Lactobacillus sp. AB5261-2


Lactobacillus sp. AMC1




Lactobacillus sp. AB5262


Lactobacillus sp. AMC2




Lactobacillus sp. AB5281


Lactobacillus sp. AmmhmR15




Lactobacillus sp. AB5282


Lactobacillus sp. AmmhmR3




Lactobacillus sp. ab6


Lactobacillus sp. AmmhmR5




Lactobacillus sp. ABRIINW-GOL4


Lactobacillus sp. AmmhmT7




Lactobacillus sp. ABRIINW.F58


Lactobacillus sp. AmmohmiT




Lactobacillus sp. ABT LI


Lactobacillus sp. Ammohmr22




Lactobacillus sp. ABT L2


Lactobacillus sp. Ammohml5




Lactobacillus sp. AbxANB3


Lactobacillus sp. Ammoporl3




Lactobacillus sp. AbxANB4


Lactobacillus sp. Ammopor2




Lactobacillus sp. ACD7


Lactobacillus sp. AmmpolR3




Lactobacillus sp. Achmtol6


Lactobacillus sp. AmmpolR6




Lactobacillus sp. Achmto2


Lactobacillus sp. Amsbbrl7




Lactobacillus sp. AcjLac1


Lactobacillus sp. Amsbbrl9




Lactobacillus sp. AcjLac10


Lactobacillus sp. Amsbbr2




Lactobacillus sp. AcjLac11


Lactobacillus sp. Amsbbr24




Lactobacillus sp. AcjLac12


Lactobacillus sp. Amsbbrfi




Lactobacillus sp. AcjLac13


Lactobacillus sp. Amsbbtll




Lactobacillus sp. AcjLac14


Lactobacillus sp. DSM 15502




Lactobacillus sp. AcjLac15


Lactobacillus sp. DSM 20197




Lactobacillus sp. AcjLac16


Lactobacillus sp. DumLac1




Lactobacillus sp. AcjLac17


Lactobacillus sp. DumLac10




Lactobacillus sp. AcjLac18


Lactobacillus sp. DumLac11




Lactobacillus sp. AcjLac3


Lactobacillus sp. DumLac12




Lactobacillus sp. AcjLac4


Lactobacillus sp. DumLac13




Lactobacillus sp. AcjLac5


Lactobacillus sp. DumLac14




Lactobacillus sp. AcjLac6


Lactobacillus sp. DumLac15




Lactobacillus sp. AcjLac7


Lactobacillus sp. DumLac17




Lactobacillus sp. AcjLac8


Lactobacillus sp. DumLac18




Lactobacillus sp. AcjLac9


Lactobacillus sp. DumLac19




Lactobacillus sp. Acpor9


Lactobacillus sp. DumLac2




Lactobacillus sp. Adhmro12


Lactobacillus sp. DumLac20




Lactobacillus sp. Adhmro7


Lactobacillus sp. DumLac21




Lactobacillus sp. DumLac22


Lactobacillus sp. GL1




Lactobacillus sp. DumLac23


Lactobacillus sp. GL2




Lactobacillus sp. DuiuLac24


Lactobacillus sp. GM 01




Lactobacillus sp. DumLac25


Lactobacillus sp. GS21




Lactobacillus sp. DumLac26


Lactobacillus sp. GTH1




Lactobacillus sp. DumLac27


Lactobacillus sp. GTH10




Lactobacillus sp. DumLac28


Lactobacillus sp. GTH13




Lactobacillus sp. DumLac29


Lactobacillus sp. GTH15




Lactobacillus sp. DumLac3


Lactobacillus sp. GTH17




Lactobacillus sp. DumLac30


Lactobacillus sp. GTH18




Lactobacillus sp. DumLac31


Lactobacillus sp. GTH2




Lactobacillus sp. DumLac32


Lactobacillus sp. GTH20




Lactobacillus sp. DuinLac33


Lactobacillus sp. GTH22




Lactobacillus sp. DumLac34


Lactobacillus sp. GTH24




Lactobacillus sp. DumLac3 5


Lactobacillus sp. GTH26




Lactobacillus sp. DumLac36


Lactobacillus sp. GTH28




Lactobacillus sp. DumLac37


Lactobacillus sp. GTH29




Lactobacillus sp. DumLac38


Lactobacillus sp. GTH30




Lactobacillus sp. DumLac39


Lactobacillus sp. GTH32




Lactobacillus sp. DuniLac4


Lactobacillus sp. GTH33




Lactobacillus sp. DumLac40


Lactobacillus sp. GTH5




Lactobacillus sp. DumLac41


Lactobacillus sp. GTH6




Lactobacillus sp. DumLac42


Lactobacillus sp. GTH7




Lactobacillus sp. DumLac43


Lactobacillus sp. GTH8




Lactobacillus sp. DuniLac44


Lactobacillus sp. GTP1




Lactobacillus sp. DumLac45


Lactobacillus sp. GTP2




Lactobacillus sp. DumLac46


Lactobacillus sp. GTP3




Lactobacillus sp. DuuiLac47


Lactobacillus sp. GTP4




Lactobacillus sp. DumLac48


Lactobacillus sp. GTP5




Lactobacillus sp. DumLac49


Lactobacillus sp. GTP6




Lactobacillus sp. DumLac5


Lactobacillus sp. GTR1




Lactobacillus sp. DuniLac50


Lactobacillus sp. GTR2




Lactobacillus sp. DumLac51


Lactobacillus sp. GTS2




Lactobacillus sp. DumLac5 2


Lactobacillus sp. GV6




Lactobacillus sp. DumLac53


Lactobacillus sp. H1HS25N




Lactobacillus sp. DumLac54


Lactobacillus sp. II1IIS38N




Lactobacillus sp. DumLac6


Lactobacillus sp. H4




Lactobacillus sp. DumLac8


Lactobacillus sp. H4bbl8N




Lactobacillus sp. DumLac9


Lactobacillus sp. H4BP4N




Lactobacillus sp. El2


Lactobacillus sp. II6IIS1N




Lactobacillus sp. EG 12


Lactobacillus sp. H6HS21N




Lactobacillus sp. EL3


Lactobacillus sp. H6HS25N




Lactobacillus sp. EL6


Lactobacillus sp. H6HS28N




Lactobacillus sp. EL7


Lactobacillus sp. Hadi Naser-1




Lactobacillus sp. EMML 3041


Lactobacillus sp. Hadi Tajabadi-1




Lactobacillus sp. F-2


Lactobacillus sp. HG209




Lactobacillus sp. F1


Lactobacillus sp. HJ1




Lactobacillus sp. Fl 1


Lactobacillus sp. HJ2




Lactobacillus sp. F16


Lactobacillus sp. HL7




Lactobacillus sp. F2


Lactobacillus sp. Hma11N




Lactobacillus sp. F2(2009)


Lactobacillus sp. Hma2




Lactobacillus sp. F31


Lactobacillus sp. Hma2N




Lactobacillus sp. F52


Lactobacillus sp. Hma8




Lactobacillus sp. F7


Lactobacillus sp. HmaSN




Lactobacillus sp. Faegheh Dilah-1


Lactobacillus sp. Hon2




Lactobacillus sp. Faegheh Hadi-1


Lactobacillus sp. Hon2N




Lactobacillus sp. FAM-02


Lactobacillus sp. HRPRS2




Lactobacillus sp. FAM-04


Lactobacillus sp. HRPRTF.3




Lactobacillus sp. fhon 13


Lactobacillus sp. HRRO′lT




Lactobacillus sp. Fhonl3N


Lactobacillus sp. HRROT3




Lactobacillus sp. Fhon2N


Lactobacillus sp. HRROTE4




Lactobacillus sp. FKTJ23


Lactobacillus sp. HumaH4




Lactobacillus sp. FL1


Lactobacillus sp. HumL3




Lactobacillus sp. FL2


Lactobacillus sp. ID9203




Lactobacillus sp. FL4


Lactobacillus sp. IDLAc




Lactobacillus sp. FS1111


Lactobacillus sp. IDSAc




Lactobacillus sp. FT


Lactobacillus sp. IJ-K2




Lactobacillus sp. Gl


Lactobacillus sp. IL3




Lactobacillus sp. G24


Lactobacillus sp. IV-132




Lactobacillus sp. GB001


Lactobacillus sp. BH1398




Lactobacillus sp. BH1480


Lactobacillus sp. CL6




Lactobacillus sp. Bin4


Lactobacillus sp. CL8




Lactobacillus sp. Bin4N


Lactobacillus sp. CL9




Lactobacillus sp. Biut2


Lactobacillus sp. CLE-4




Lactobacillus sp. Biut2N


Lactobacillus sp. Com4




Lactobacillus sp. BJ H8-4


Lactobacillus sp. CPP1




Lactobacillus sp. BJ32B3


Lactobacillus sp. CR-609S




Lactobacillus sp. BJ32B4D


Lactobacillus sp. CR-6AS




Lactobacillus sp. BJ32B4S


Lactobacillus sp. CR-7AS




Lactobacillus sp. BJ4-6B


Lactobacillus sp. CRA21




Lactobacillus sp. BL263


Lactobacillus sp. CS10




Lactobacillus sp. BL301


Lactobacillus sp. CS24.2




Lactobacillus sp. BL302


Lactobacillus sp. CWBI/B-659/(E912)




Lactobacillus sp. BL303


Lactobacillus sp. CY1




Lactobacillus sp. BL304


Lactobacillus sp. D2-2-1




Lactobacillus sp. BLB1a


Lactobacillus sp. D5-2




Lactobacillus sp. BLB 1b


Lactobacillus sp. D6-4




Lactobacillus sp. BLB1c


Lactobacillus koreensis




Lactobacillus sp. BLB2


Lactobacillus sp. DCY65




Lactobacillus sp. BLB3


Lactobacillus sp. DCY75




Lactobacillus sp. Bma5


Lactobacillus sp. DF1




Lactobacillus sp. Bma5N


Lactobacillus sp. DI71




Lactobacillus sp. BS-05


Lactobacillus sp. DI83




Lactobacillus sp. BS-09


Lactobacillus sp. Dilah Makhdzir-1




Lactobacillus sp. BS-10


Lactobacillus sp. DJF R156




Lactobacillus sp. BS-11


Lactobacillus sp. DJF CR11




Lactobacillus sp. BS-15


Lactobacillus sp. DJF RP24




Lactobacillus sp. BS-19


Lactobacillus sp. DJF SLA41




Lactobacillus sp. BS-22


Lactobacillus sp. DJF WC57




Lactobacillus sp. BS-27


Lactobacillus sp. DL-DW




Lactobacillus sp. BS-29


Lactobacillus sp. DL3




Lactobacillus sp. BS-32


Lactobacillus sp. DL6




Lactobacillus sp. BS-33


Lactobacillus sp. Dorsata




Lactobacillus sp. BS-36


Lactobacillus sp. DSA-8Z




Lactobacillus sp. BS1


Lactobacillus sp. L24




Lactobacillus sp. BT6


Lactobacillus sp. L25




Lactobacillus sp. BTLCH M1/2


Lactobacillus sp. L26




Lactobacillus sp. C30An22


Lactobacillus sp. L27




Lactobacillus sp. C30An7


Lactobacillus sp. L28




Lactobacillus sp. C30An8


Lactobacillus sp. L29




Lactobacillus sp. C33LV5


Lactobacillus sp. L3




Lactobacillus sp. C56


Lactobacillus sp. L30




Lactobacillus sp. C9


Lactobacillus sp. L31




Lactobacillus sp. CCC 96S9L


Lactobacillus sp. L32




Lactobacillus sp. CCTCC ‘M 2011381’


Lactobacillus sp. L33




Lactobacillus sp. CD6


Lactobacillus sp. L34




Lactobacillus sp. cemb29


Lactobacillus sp. L35




Lactobacillus sp. CF38


Lactobacillus sp. L37




Lactobacillus sp. CHU-R


Lactobacillus sp. L376




Lactobacillus sp. CIA-04


Lactobacillus sp. L38




Lactobacillus sp. CTA-40BC


Lactobacillus sp. L39




Lactobacillus sp. CIDCA 83110


Lactobacillus sp. L4




Lactobacillus sp. CIDCA 83111


Lactobacillus sp. L40




Lactobacillus sp. CIDCA 83116


Lactobacillus sp. L41




Lactobacillus sp. CIDCA 8314


Lactobacillus sp. L42




Lactobacillus sp. CIDCA 8315


Lactobacillus sp. L43




Lactobacillus sp. CIDCA 8317


Lactobacillus sp. L44




Lactobacillus sp. CIDCA 8321


Lactobacillus sp. L45




Lactobacillus sp. CIDCA 8325


Lactobacillus sp. L5gt




Lactobacillus sp. CIDCA 8326


Lactobacillus sp. L5km




Lactobacillus sp. CIDCA 8332


Lactobacillus sp. L6




Lactobacillus sp. CIDCA 8337


Lactobacillus sp. L6 N139




Lactobacillus sp. CIDCA 8343


Lactobacillus sp. L6 N18




Lactobacillus sp. CIDCA 8345


Lactobacillus sp. L6 N23




Lactobacillus sp. CIDCA 8347


Lactobacillus sp. L6 N6




Lactobacillus sp. CIDCA 8348


Lactobacillus sp. L6 N68




Lactobacillus sp. CL


Lactobacillus sp. L63(2011)




Lactobacillus sp. CL11


Lactobacillus sp. L67




Lactobacillus sp. CL3


Lactobacillus sp. L7




Lactobacillus sp. CL5


Lactobacillus sp. L8




Lactobacillus sp. L8(2006)


Lactobacillus sp. MA




Lactobacillus sp. L9


Lactobacillus sp. Makhdzir Dilah-1




Lactobacillus sp. L9(2006)


Lactobacillus sp. Makhdzir Mardan-1




Lactobacillus sp. L9(2008)


Lactobacillus sp. Makhdzir Naser-1




Lactobacillus sp. LA-6


Lactobacillus sp. Mardan Mustafa-1




Lactobacillus sp. LAB-1


Lactobacillus sp. Mardan Naser-1




Lactobacillus sp. LAB-3


Lactobacillus sp. Mardan Yazid-1




Lactobacillus sp. LAB 10


Lactobacillus sp. Mardanium




Lactobacillus sp. lab 11


Lactobacillus sp. mashak 26




Lactobacillus sp. lab 13


Lactobacillus sp. MB1A




Lactobacillus sp. Iab2


Lactobacillus sp. MB1C




Lactobacillus sp. Lac 1


Lactobacillus sp. MB1D




Lactobacillus sp. Lac 2


Lactobacillus sp. MbBbr1




Lactobacillus sp. Lac 3


Lactobacillus sp. MbBipro17




Lactobacillus sp. Lac 4


Lactobacillus sp. MbBipro19




Lactobacillus sp. Lac 5


Lactobacillus sp. MbBipro7




Lactobacillus sp. Lac 6


Lactobacillus sp. MbBipto3




Lactobacillus sp. Lact01


Lactobacillus sp. MbHmrol




Lactobacillus sp. Lact02


Lactobacillus sp. MbHmro5




Lactobacillus sp. Lact03


Lactobacillus sp. Mbhoto3




Lactobacillus sp. Lact04


Lactobacillus sp. Mbhsr5




Lactobacillus sp. Lact05


Lactobacillus sp. Mbobb2r6




Lactobacillus sp. Lact06


Lactobacillus sp. Mbohmt7




Lactobacillus sp. Lact0S


Lactobacillus sp. Mboho2r2




Lactobacillus sp. Lact09


Lactobacillus sp. Mbohs2rl 2




Lactobacillus sp. Lact11


Lactobacillus sp. Mbohs2t2




Lactobacillus sp. Lact12


Lactobacillus sp. Mbohs2t7




Lactobacillus sp. Lact13


Lactobacillus sp. Mbopo2r2




Lactobacillus sp. Lact14


Lactobacillus sp. Mbopo2t4




Lactobacillus sp. Lact15


Lactobacillus sp. Mbopo2t6




Lactobacillus sp. Ib01


Lactobacillus sp. MBUL75




Lactobacillus sp. LB1


Lactobacillus sp. MD-1




Lactobacillus sp. LB6


Lactobacillus sp. MEB1




Lactobacillus sp. LBS-27


Lactobacillus sp. MF-07




Lactobacillus sp. ljubLlr


Lactobacillus sp. MF1




Lactobacillus sp. ljubL4to


Lactobacillus sp. MF19(2010)




Lactobacillus sp. LM-17


Lactobacillus sp. MF213




Lactobacillus sp. LMG 17676


Lactobacillus sp. MF41(2010)




Lactobacillus sp. LOOC279


Lactobacillus sp. MF44(2010)




Lactobacillus sp. LQC 1642


Lactobacillus sp. MIB1




Lactobacillus sp. LQC 1677


Lactobacillus sp. MMP239




Lactobacillus sp. LQC 1693


Lactobacillus sp. MMP241




Lactobacillus sp. LQC 1930


Lactobacillus sp. MMP242




Lactobacillus sp. LQC 1937


Lactobacillus sp. MNFS-3




Lactobacillus sp. LQC 1938


Lactobacillus sp. MONT4




Lactobacillus sp. LQC 1942


Lactobacillus sp. MR-1




Lactobacillus sp. LQC 1951


Lactobacillus sp. MR-2




Lactobacillus sp. LQC 1954


Lactobacillus sp. MRS-II22




Lactobacillus sp. LQC 1958


Lactobacillus sp. MRS-III06




Lactobacillus sp. LQC 1959


Lactobacillus sp. MRSB




Lactobacillus sp. LSI


Lactobacillus sp. MSUGMIR-3




Lactobacillus sp. LS3


Lactobacillus sp. MWBPC 1-3-1




Lactobacillus sp. LS7


Lactobacillus sp. MYMRS/TEN2




Lactobacillus sp. Is79


Lactobacillus sp. MYMRS/TLLT1




Lactobacillus sp. LS8


Lactobacillus sp. MYMRS/TLU1-T




Lactobacillus sp. Lu3


Lactobacillus sp. MYTPY/TEN3




Lactobacillus sp. Lu5


Lactobacillus sp. Nl-5-2




Lactobacillus sp. Lu7


Lactobacillus sp. N19




Lactobacillus sp. M.U.L2


Lactobacillus sp. N2-7-1




Lactobacillus sp. Ml


Lactobacillus sp. N20




Lactobacillus sp. M1T3B2


Lactobacillus sp. N27




Lactobacillus sp. M1T4B2


Lactobacillus sp. N3-1-1




Lactobacillus sp. M20


Lactobacillus sp. N3-10-1




Lactobacillus sp. M23


Lactobacillus sp. N3-6




Lactobacillus sp. M2T2B4


Lactobacillus sp. N4-4




Lactobacillus sp. M3T1B1


Lactobacillus sp. N4-6




Lactobacillus sp. M3T1B2


Lactobacillus sp. N4-9




Lactobacillus sp. M3T1B5


Lactobacillus sp. N54




Lactobacillus sp. M8


Lactobacillus sp. Naser Makhdzir-1




Lactobacillus sp. M9-1


Lactobacillus sp. Naser Tajabadi-1




Lactobacillus sp. NBRC 101665


Lactobacillus sp. NBRC 107254




Lactobacillus sp. NBRC 101976


Lactobacillus sp. NBRC 107255




Lactobacillus sp. NBRC 106011


Lactobacillus sp. NBRC 107257




Lactobacillus sp. NBRC 106019


Lactobacillus sp. NBRC 107258




Lactobacillus sp. NBRC 106020


Lactobacillus sp. NBRC 107259




Lactobacillus sp. NBRC 106022


Lactobacillus sp. NBRC 107261




Lactobacillus sp. NBRC 106024


Lactobacillus sp. NBRC 107262




Lactobacillus sp. NBRC 106029


Lactobacillus sp. NBRC 107263




Lactobacillus sp. NBRC 106038


Lactobacillus sp. NBRC 107265




Lactobacillus sp. NBRC 106039


Lactobacillus sp. NBRC 107266




Lactobacillus sp. NBRC 106040


Lactobacillus sp. NBRC 107267




Lactobacillus sp. NBRC 106041


Lactobacillus sp. NBRC 107268




Lactobacillus sp. NBRC 106042


Lactobacillus sp. NBRC 107270




Lactobacillus sp. NBRC 106044


Lactobacillus sp. NBRC 107273




Lactobacillus sp. NBRC 106045


Lactobacillus sp. NBRC 107274




Lactobacillus sp. NBRC 106046


Lactobacillus sp. NBRC 107275




Lactobacillus sp. NBRC 106047


Lactobacillus sp. NBRC 107276




Lactobacillus sp. NBRC 107174


Lactobacillus sp. NBRC 107279




Lactobacillus sp. NBRC 107175


Lactobacillus sp. NBRC 107282




Lactobacillus sp. NBRC 107177


Lactobacillus sp. NBRC 107283




Lactobacillus sp. NRRC 1071 79


Lactobacillus sp. NRRC 107284




Lactobacillus sp. NBRC 107180


Lactobacillus sp. NBRC 107285




Lactobacillus sp. NBRC 107181


Lactobacillus sp. NBRC 107286




Lactobacillus sp. NBRC 107182


Lactobacillus sp. NBRC 107288




Lactobacillus sp. NRRC 1071 83


Lactobacillus sp. NBRC 1 07289




Lactobacillus sp. NBRC 107184


Lactobacillus sp. NBRC 107290




Lactobacillus sp. NBRC 107185


Lactobacillus sp. NBRC 107292




Lactobacillus sp. NBRC 107187


Lactobacillus sp. NBRC 107293




Lactobacillus sp. NBRC 107188


Lactobacillus sp. NBRC 107294




Lactobacillus sp. NBRC 107191


Lactobacillus sp. NBRC 107295




Lactobacillus sp. NBRC 107192


Lactobacillus sp. NBRC 107297




Lactobacillus sp. NBRC 107194


Lactobacillus sp. NBRC 107298




Lactobacillus sp. NBRC 107195


Lactobacillus sp. NBRC 107300




Lactobacillus sp. NBRC 107196


Lactobacillus sp. NBRC 107301




Lactobacillus sp. NBRC 107197


Lactobacillus sp. NBRC 107302




Lactobacillus sp. NBRC 107198


Lactobacillus sp. NBRC 107304




Lactobacillus sp. NBRC 107199


Lactobacillus sp. NBRC 107305




Lactobacillus sp. NBRC 107200


Lactobacillus sp. NBRC 107307




Lactobacillus sp. NBRC 107201


Lactobacillus sp. NBRC 107308




Lactobacillus sp. NBRC 107202


Lactobacillus sp. NBRC 107311




Lactobacillus sp. NBRC 107203


Lactobacillus sp. NBRC 107312




Lactobacillus sp. NRRC 107205


Lactobacillus sp. NBRC 107313




Lactobacillus sp. NBRC 107207


Lactobacillus sp. NBRC 107315




Lactobacillus sp. NBRC 107208


Lactobacillus sp. NBRC 107316




Lactobacillus sp. NBRC 107210


Lactobacillus sp. NBRC 107318




Lactobacillus sp. NRRC 107211


Lactobacillus sp. NBRC 107320




Lactobacillus sp. NBRC 107212


Lactobacillus sp. NBRC 107321




Lactobacillus sp. NBRC 107214


Lactobacillus sp. NBRC 107323




Lactobacillus sp. NBRC 107215


Lactobacillus sp. NBRC 107324




Lactobacillus sp. NBRC 107216


Lactobacillus sp. NBRC 107325




Lactobacillus sp. NBRC 107220


Lactobacillus sp. NBRC 107326




Lactobacillus sp. NBRC 107223


Lactobacillus sp. NBRC 107327




Lactobacillus sp. NBRC 107224


Lactobacillus sp. NBRC 107328




Lactobacillus sp. NRRC 107226


Lactobacillus sp. NBRC 107329




Lactobacillus sp. NBRC 107227


Lactobacillus sp. NBRC 107330




Lactobacillus sp. NBRC 107228


Lactobacillus sp. NBRC 107332




Lactobacillus sp. NBRC 107229


Lactobacillus sp. NBRC 107334




Lactobacillus sp. NRRC 107232


Lactobacillus sp. NBRC 1 07336




Lactobacillus sp. NBRC 107233


Lactobacillus sp. NBRC 107337




Lactobacillus sp. NBRC 107234


Lactobacillus sp. NBRC 107338




Lactobacillus sp. NBRC 107236


Lactobacillus sp. NBRC 107339




Lactobacillus sp. NBRC 107237


Lactobacillus sp. NBRC 107340




Lactobacillus sp. NBRC 107238


Lactobacillus sp. NBRC 107341




Lactobacillus sp. NBRC 107239


Lactobacillus sp. NBRC 107342




Lactobacillus sp. NBRC 107240


Lactobacillus sp. NBRC 107347




Lactobacillus sp. NBRC 107242


Lactobacillus sp. NBRC 107348




Lactobacillus sp. NRRC 107246


Lactobacillus sp. NBRC 107349




Lactobacillus sp. NBRC 107249


Lactobacillus sp. NBRC 107351




Lactobacillus sp. NBRC 107252


Lactobacillus sp. NBRC 107352




Lactobacillus sp. NBRC 107253


Lactobacillus sp. NBRC 14511




Lactobacillus sp. NBRC 14512


Lactobacillus sp. JCM 8637




Lactobacillus sp. NBRC 14513


Lactobacillus sp. JCM 8652




Lactobacillus sp. NBRC 3229


Lactobacillus sp. JCM 8653




Lactobacillus sp. NBRC 3231


Lactobacillus sp. JCM 9717




Lactobacillus sp. NBRC 3914


Lactobacillus sp. JCM 9721




Lactobacillus sp. NBRC 3954


Lactobacillus sp. JN05




Lactobacillus sp. NEQAS6172


Lactobacillus sp. JN1




Lactobacillus sp. NGRI 0001


Lactobacillus sp. JN10




Lactobacillus sp. NGRI 0130


Lactobacillus sp. JN2




Lactobacillus sp. NGRI 0130Q


Lactobacillus sp. JN3




Lactobacillus sp. NGRI 0304


Lactobacillus sp. JN4




Lactobacillus sp. NGRI 0305


Lactobacillus sp. JN5




Lactobacillus sp. NIR2


Lactobacillus sp. JN6




Lactobacillus sp. NIR20


Lactobacillus sp. JN7




Lactobacillus sp. NIR24


Lactobacillus sp. JN8




Lactobacillus sp. NIR4


Lactobacillus sp. JN9




Lactobacillus sp. NIR5


Lactobacillus sp. JSB1




Lactobacillus sp. NIR6


Lactobacillus sp. JV-2006




Lactobacillus sp. NIR7


Lactobacillus sp. JW04




Lactobacillus sp. NIR8


Lactobacillus sp. KC19




Lactobacillus sp. NIRD-P2


Lactobacillus sp. KC35b




Lactobacillus sp. NM120-1


Lactobacillus sp. KC36a




Lactobacillus sp. NM191-2


Lactobacillus sp. KC36b




Lactobacillus sp. NM191-3


Lactobacillus sp. KC38




Lactobacillus sp. NM48-2


Lactobacillus sp. KC45a




Lactobacillus sp. IV-136


Lactobacillus sp. KC45b




Lactobacillus sp. IV-145


Lactobacillus sp. KLB46




Lactobacillus sp. IWT246


Lactobacillus sp. KLB58




Lactobacillus sp. IWT248


Lactobacillus sp. KLB79




Lactobacillus sp. j0227


Lactobacillus sp. KLDS 1.0701




Lactobacillus sp. j0228


Lactobacillus sp. KLDS 1.0702




Lactobacillus sp. j0230


Lactobacillus sp. KLDS 1.0703




Lactobacillus sp. j0238


Lactobacillus sp. KLDS 1.0704




Lactobacillus sp. j0383


Lactobacillus sp. KLDS 1.0705




Lactobacillus sp. JC-11


Lactobacillus sp. KLDS 1.0706




Lactobacillus sp. JCM 1013


Lactobacillus sp. KLDS 1.0707




Lactobacillus sp. JCM 1033


Lactobacillus sp. KLDS 1.0708




Lactobacillus sp. JCM 1034


Lactobacillus sp. KLDS 1.0709




Lactobacillus sp. JCM 1035


Lactobacillus sp. KLDS 1.0710




Lactobacillus sp. JCM 1088


Lactobacillus sp. KLDS 1.0711




Lactobacillus sp. JCM 1102


Lactobacillus sp. KLDS 1.0712




Lactobacillus sp. JCM 11039


Lactobacillus sp. KLDS 1.0713




Lactobacillus sp. JCM 1177


Lactobacillus sp. KLDS 1.0714




Lactobacillus sp. JCM 1179


Lactobacillus sp. KLDS 1.0715




Lactobacillus sp. JCM 1183


Lactobacillus sp. KLDS 1.0716




Lactobacillus sp. JCM 1552


Lactobacillus sp. KLDS 1.0717




Lactobacillus sp. JCM 1555


Lactobacillus sp. KLDS 1.0718




Lactobacillus sp. JCM 20043


Lactobacillus sp. KLDS 1.0719




Lactobacillus sp. JCM 20061


Lactobacillus sp. kvahm3N




Lactobacillus sp. JCM 2010


Lactobacillus sp. L-YJ




Lactobacillus sp. JCM 20147


Lactobacillus sp. L01




Lactobacillus sp. JCM 2048


Lactobacillus sp. L02




Lactobacillus sp. JCM 2049


Lactobacillus sp. L03




Lactobacillus sp. JCM 2761


Lactobacillus sp. LI




Lactobacillus sp. JCM 2762


Lactobacillus sp. L10




Lactobacillus sp. JCM 2763


Lactobacillus sp. LI 1




Lactobacillus sp. JCM 2764


Lactobacillus sp. L12




Lactobacillus sp. JCM 2768


Lactobacillus sp. LI3




Lactobacillus sp. JCM 2770


Lactobacillus sp. L13(2006)




Lactobacillus sp. JCM 2774


Lactobacillus sp. L14




Lactobacillus sp. JCM 5867


Lactobacillus sp. L15




Lactobacillus sp. JCM 5868


Lactobacillus sp. L17




Lactobacillus sp. JCM 5869


Lactobacillus sp. LI8




Lactobacillus sp. JCM 7524


Lactobacillus sp. L19




Lactobacillus sp. JCM 7525


Lactobacillus sp. L2




Lactobacillus sp. JCM 7527


Lactobacillus sp. L20




Lactobacillus sp. JCM 8601


Lactobacillus sp. L21




Lactobacillus sp. JCM 8609


Lactobacillus sp. L215




Lactobacillus sp. JCM 8616


Lactobacillus sp. L22




Lactobacillus sp. JCM 8633


Lactobacillus sp. L23




Lactobacillus sp. SR2


Lactobacillus sp. TBZ3




Lactobacillus sp. SW201


Lactobacillus sp. TFC 4301




Lactobacillus sp. SWM Isolation 3


Lactobacillus sp. THK-024




Lactobacillus sp. SXVIII10(2011)


Lactobacillus sp. THK-V2




Lactobacillus sp. SXVIII11(2011)


Lactobacillus sp. THK-V8




Lactobacillus sp. SXVIII9(2011)


Lactobacillus sp. THK-W28




Lactobacillus sp. T057


Lactobacillus sp. TIIK-W4




Lactobacillus sp. T059


Lactobacillus sp. Thmrol5




Lactobacillus sp. T11g2


Lactobacillus sp. Thmro2




Lactobacillus sp. T13/5


Lactobacillus sp. Thmro6




Lactobacillus sp. T17/4D


Lactobacillus sp. Thoto2




Lactobacillus sp. T17/4F


Lactobacillus sp. TL33a




Lactobacillus sp. T1R1C12


Lactobacillus sp. TL35




Lactobacillus sp. T1R2C3


Lactobacillus sp. TLMP1




Lactobacillus sp. T1R3C2


Lactobacillus sp. TLMP2




Lactobacillus sp. T23/3


Lactobacillus sp. TLMP3




Lactobacillus sp. T2R1C4


Lactobacillus sp. TLMP4




Lactobacillus sp. T2R2C12


Lactobacillus sp. TLMP5




Lactobacillus sp. T2R4C3


Lactobacillus sp. TMW 1.1309




Lactobacillus sp. T3R1C1


Lactobacillus sp. TNG 15




Lactobacillus sp. T3R2C12


Lactobacillus sp. TN627




Lactobacillus sp. T3R2C13


Lactobacillus sp. TN644




Lactobacillus sp. T4R2C14


Lactobacillus sp. Tporo2




Lactobacillus sp. T4R3C18


Lactobacillus sp. TR7.2.20




Lactobacillus sp. T5 R1C10


Lactobacillus sp. TR7.3.1 7




Lactobacillus sp. T5R3C15


Lactobacillus sp. TR7.4.12




Lactobacillus sp. T5R3C19


Lactobacillus sp. TRC1




Lactobacillus sp. T5R3C24


Lactobacillus sp. TRC7




Lactobacillus sp. T5R4C21


Lactobacillus sp. TRF5




Lactobacillus sp. TAB-OI


Lactobacillus sp. TRF7




Lactobacillus sp. TAB-02


Lactobacillus sp. TRF8




Lactobacillus sp. TAB-03


Lactobacillus sp. TS1




Lactobacillus sp. TAB-04


Lactobacillus sp. TS2




Lactobacillus sp. TAB-05


Lactobacillus sp. TS3




Lactobacillus sp. TAB-06


Lactobacillus sp. TS4




Lactobacillus sp. TAB-07


Lactobacillus sp. TSK G32-2




Lactobacillus sp. TAB-08


Lactobacillus sp. TTp12




Lactobacillus sp. TAB-09


Lactobacillus sp. TTp13




Lactobacillus sp. TAB-10


Lactobacillus sp. TTp14




Lactobacillus sp. TAB-11


Lactobacillus sp. TTp4




Lactobacillus sp. TAB-13


Lactobacillus sp. TTp6




Lactobacillus sp. TAB-15


Lactobacillus sp. V2




Lactobacillus sp. TAB-16


Lactobacillus sp. VITPRS49




Lactobacillus sp. TAB-19


Lactobacillus sp. VM9




Lactobacillus sp. TAB-20


Lactobacillus sp. W2




Lactobacillus sp. TAB-21


Lactobacillus sp. W20




Lactobacillus sp. TAB-22


Lactobacillus sp. W56




Lactobacillus sp. TAB-23


Lactobacillus sp. WC2




Lactobacillus sp. TAB-24


Lactobacillus sp. WDC04




Lactobacillus sp. TAB-25


Lactobacillus sp. WK2S-6B




Lactobacillus sp. TAB-26


Lactobacillus sp. WX131




Lactobacillus sp. TAB-29


Lactobacillus sp. WX212




Lactobacillus sp. TAB-30


Lactobacillus sp. WX213




Lactobacillus sp. TAB-31


Lactobacillus sp. XI




Lactobacillus sp. TAB-33


Lactobacillus sp. Y10




Lactobacillus sp. Taj Amir-1


Lactobacillus sp. Yazid Arash-1




Lactobacillus sp. Taj Mahdi


Lactobacillus sp. Yazid Taj-1




Lactobacillus sp. Taj Mar-1


Lactobacillus sp. YE06




Lactobacillus sp. Taj Mustafa-1


Lactobacillus sp. YE07




Lactobacillus sp. Taj Naser-1


Lactobacillus sp. YE08




Lactobacillus sp. Taj Yazid-1


Lactobacillus sp. YE 10




Lactobacillus sp. Taj-KH107


Lactobacillus sp. YFPB2BMX




Lactobacillus sp. Taj-KH109


Lactobacillus sp. YW




Lactobacillus sp. Taj-KH123


Lactobacillus sp. YYS




Lactobacillus sp. Taj-KS164


Lactobacillus sp. ZL7




Lactobacillus sp. Taj-KS82


Lactobacillus sp. ZYM7




Lactobacillus sp. Tajabadi-I


Lactobacillus sp. A A18




Lactobacillus sp. Tbbtol5


Lactobacillus sp. A A21




Lactobacillus sp. TBZ


Lactobacillus sp. A A25




Lactobacillus sp. TBZ2


Lactobacillus sp. A A29




Lactobacillus sp. A A3 5


Lactobacillus sp. r2




Lactobacillus sp. A A44


Lactobacillus sp. R4B




Lactobacillus sp. A A45


Lactobacillus sp. R4C




Lactobacillus sp. A A48


Lactobacillus sp. r5-wl0




Lactobacillus sp. A A49


Lactobacillus sp. r7




Lactobacillus sp. A A85


Lactobacillus sp. r8




Lactobacillus sp. A A96


Lactobacillus sp. RA2053




Lactobacillus sp. B A100


Lactobacillus sp. RA2062




Lactobacillus sp. B A101


Lactobacillus sp. RA2066




Lactobacillus sp. B A102


Lactobacillus sp. RA2113




Lactobacillus sp. B A103


Lactobacillus sp. RA2120




Lactobacillus sp. B A12


Lactobacillus sp. rennanqilfy 10




Lactobacillus sp. B A13


Lactobacillus sp. rennanqilfy 1 1




Lactobacillus sp. B A14


Lactobacillus sp. rennanqilfy 14




Lactobacillus sp. B A16


Lactobacillus sp. rennanqilfy 15




Lactobacillus sp. B A19


Lactobacillus sp. rennanqilfy 16




Lactobacillus sp. B A20


Lactobacillus sp. rennanqilfy 17




Lactobacillus sp. B A23


Lactobacillus sp. rennanqilfy 19




Lactobacillus sp. B A31


Lactobacillus sp. rennanqilfy 2




Lactobacillus sp. B A33


Lactobacillus sp. rennanqilfy20




Lactobacillus sp. NM59-6


Lactobacillus sp. rennanqilfy32




Lactobacillus sp. NR1006


Lactobacillus sp. rennanqilfy34




Lactobacillus sp. NRCT-KU 1


Lactobacillus sp. rennanqilfy61




Lactobacillus sp. NS 111


Lactobacillus sp. rennanqilyf 13




Lactobacillus sp. NS123


Lactobacillus sp. rennanqilyf4




Lactobacillus sp. NS133


Lactobacillus sp. rennanqilyf5




Lactobacillus sp. Oh-3


Lactobacillus sp. rennanqilyf7




Lactobacillus sp. Oh-4


Lactobacillus sp. rennanqilyfiS




Lactobacillus sp. OR 11


Lactobacillus sp. rennanqilyf?




Lactobacillus sp. OR 9


Lactobacillus sp. RIC11-BK004




Lactobacillus sp. OR1


Lactobacillus sp. RIC11-BK008




Lactobacillus sp. OR6


Lactobacillus sp. RIC11-BK009




Lactobacillus sp. oral taxon 052


Lactobacillus sp. RIC11-MK006




Lactobacillus sp. oral taxon 418


Lactobacillus sp. RIC11-MK010




Lactobacillus sp. oral taxon 424


Lactobacillus sp. RIC12-Oh002




Lactobacillus sp. oral taxon 461


Lactobacillus sp. RIC12-Oh004




Lactobacillus sp. oral taxon A89


Lactobacillus sp. RKY2




Lactobacillus sp. oral taxon B73


Lactobacillus sp. RMS3-1




Lactobacillus sp. oral taxon B80


Lactobacillus sp. Rnm4




Lactobacillus sp. oral taxon D06


Lactobacillus sp. Rrv5




Lactobacillus sp. oral taxon G15


Lactobacillus sp. RU1




Lactobacillus sp. oral taxon G16


Lactobacillus sp. SI




Lactobacillus sp. oral taxon G18


Lactobacillus sp. S14




Lactobacillus sp. oral taxon G19


Lactobacillus sp. SI5




Lactobacillus sp. oral taxon G98


Lactobacillus sp. S16




Lactobacillus sp. oral taxon H08


Lactobacillus sp. S19




Lactobacillus sp. oral taxon H12


Lactobacillus sp. S4-3




Lactobacillus sp. oral taxon H14


Lactobacillus sp. S4B




Lactobacillus sp. oral taxon H25


Lactobacillus sp. S4C




Lactobacillus sp. OS 10


Lactobacillus sp. Sal8




Lactobacillus sp. OS72


Lactobacillus sp. SCA34




Lactobacillus sp. P22


Lactobacillus sp. SCA39




Lactobacillus sp. P23


Lactobacillus sp. SCA52




Lactobacillus sp. P8


Lactobacillus sp. SCA7




Lactobacillus sp. PC-3


Lactobacillus sp. SD2




Lactobacillus sp. PC121B


Lactobacillus sp. SDR1




Lactobacillus sp. pep8


Lactobacillus sp. SH.Z4




Lactobacillus sp. Probio-24


Lactobacillus sp. sh.zhl




Lactobacillus sp. Probio-27


Lactobacillus sp. sfi.zh2




Lactobacillus sp. QOX-01BC


Lactobacillus sp. sh.zh3




Lactobacillus sp. QOX-02BC


Lactobacillus sp. Shuhaimi Arash-1




Lactobacillus sp. QOX-06BC


Lactobacillus sp. Shuhaimi Mardan-1




Lactobacillus sp. QOX-10BC


Lactobacillus sp. Shuhaimi naser-1




Lactobacillus sp. QOX-20G


Lactobacillus sp. Shuhaimi Taj-1




Lactobacillus sp. R-17510


Lactobacillus sp. Shuhaimi Yazid-1




Lactobacillus sp. R-17516


Lactobacillus sp. SK007




Lactobacillus sp. R-17818


Lactobacillus sp. SL




Lactobacillus sp. R-21386


Lactobacillus sp. SRI




Lactobacillus sp. R-42633


Lactobacillus sp. B AB1




Lactobacillus sp. rlw3


Lactobacillus sp. B CGI




Lactobacillus sp. B CG3


Lactobacillus sp. B A98




Lactobacillus sp. B CG53


Lactobacillus sp. B CG71




Lactobacillus sp. B CG63


Lactobacillus sp. B CG76




Lactobacillus sp. B A34

environmental samples



Lactobacillus sp. B A36


Lactobacillus amylovorus CAG:719




Lactobacillus sp. B A37


Lactobacillus mminis CAG:367




Lactobacillus sp. B A41


Lactobacillus sp. DGGE band 26




Lactobacillus sp. B A42


Lactobacillus sp. DGGE band 29




Lactobacillus sp. B A52


Lactobacillus sp. enrichment culture clone 1




Lactobacillus sp. B A53


Lactobacillus sp. enrichment culture clone 58




Lactobacillus sp. B A64


Lactobacillus sp. enrichment culture clone PSR03




Lactobacillus sp. B A65


Lactobacillus sp. enrichment culture clone PSR2




Lactobacillus sp. B A76


Lactobacillus sp. enrichment culture clone PTmrs6




Lactobacillus sp. B A78


Lactobacillus sp. enrichment culture DGGE gel band 10




Lactobacillus sp. B A81


Lactobacillus sp. enrichment culture DGGE gel band 12




Lactobacillus sp. B A86


Lactobacillus sp. enrichment culture DGGE gel band 4




Lactobacillus sp. B A87


Lactobacillus sp. enrichment culture DGGE gel band 8




Lactobacillus sp. B A89


Lactobacillus sp. enrichment culture DGGE gel band 9




Lactobacillus sp. B A90


Lactobacillus sp. oral clone CX036




Lactobacillus sp. B A91


Lactobacillus sp. oral clone HT002




Lactobacillus sp. B A95

1 Lactobacillus sp. oral clone HT070



Lactobacillus sp. B A97

uncultured Lactobacillus sp.







Genus: Bifidobacterium









Bifidobacterium adolescentis


Bifidobacterium breve EX336960VC18




Bifidobacterium adolescentis ATCC′ 15703


Bifidobacterium breve EX336960VC19




Bifidobacterium adolescentis L2-32


Bifidobacterium breve EX336960VC21




Bifidobacterium angulatum


Bifidobacterium breve EX533959VC21




Bifidobacterium angulatum DSM 20098 = JCM 7096


Bifidobacterium breve HPH0326




Bifidobacterium angulatum F16 22


Bifidobacterium breve JCP7499




Bifidobacterium animalis


Bifidobacterium breve S27




Bifidobacterium animalis subsp. animalis


Bifidobacterium breve UCC2003




Bifidobacterium animalis subsp. animalis ATCC 25527


Bifidobacterium callitrichos




Bifidobacterium animalis subsp. lactis


Bifidobacterium catenulatum




Bifidobacterium animalis subsp. lactis AD011


Bifidobacterium catenulatum DSM 16992 = JCM 1194




Bifidobacterium animalis subsp. lactis ATCC 27673


Bifidobacterium chocrinum




Bifidobacterium animalis subsp. lactis B420


Bifidobacterium choerinum DSM 20434




Bifidobacterium animalis subsp. lactis BB-12


Bifidobacterium coryneforme




Bifidobacterium animalis subsp. lactis Bi-07


Bifidobacterium crudilactis




Bifidobacterium animalis subsp. lactis Bl-04


Bifidobacterium cuniculi




Bifidobacterium animalis subsp. lactis B112


Bifidobacterium dentium




Bifidobacterium animalis subsp. lactis BLC1


Bifidobacterium dentium ATCC 27678




Bifidobacterium animalis subsp. lactis BS 01


Bifidobacterium dentium ATCC 27679




Bifidobacterium animalis subsp. lactis CNCM 1-2494


Bifidobacterium dentium Bd 1




Bifidobacterium animalis subsp. lactis DSM 10140


Bifidobacterium dentium JCM 1195




Bifidobacterium animalis subsp. lactis HN019


Bifidobacterium dentium JCVTHMP022




Bifidobacterium animalis subsp. lactis V9


Bifidobacterium gallicum




Bifidobacterium asteroides


Bifidobacterium gallicum DSM 20093




Bifidobacterium asteroides PRL2011


Bifidobacterium gallinarum




Bifidobacterium biavatii


Bifidobacterium indicum




Bifidobacterium bifidum





Bifidobacterium bifidum ATCC 29521 - JCM 1255


Bifidobacterium indicum LMG 11587




Bifidobacterium bifidum BGN4


Bifidobacterium kashiwanohense




Bifidobacterium bifidum CECT 7366


Bifidobacterium kashiwanohense JCM 15439




Bifidobacterium bifidum DSM 20215


Bifidobacterium longum




Bifidobacterium bifidum IPLA 20015


Bifidobacterium longum 3 1 37DFAAB




Bifidobacterium bifidum JCM 1254


Bifidobacterium longum AGR2137




Bifidobacterium bifidum LMG 13195


Bifidobacterium longum BORI




Bifidobacterium bifidum NCI MB 41171


Bifidobacterium longum D2957




Bifidobacterium bifidum PRL2010


Bifidobacterium longum DJO10A




Bifidobacterium bifidum S17


Bifidobacterium longum El 8




Bifidobacterium bombi


Bifidobacterium longum NCC2705




Bifidobacterium bombi DSM 19703


Bifidobacterium longum subsp. infantis




Bifidobacterium bourn


Bifidobacterium longum subsp. infantis 157F




Bifidobacterium breve


Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222




Bifidobacterium breve ACS-071 -V-Sch8b


Bifidobacterium longum subsp. infantis CCUG 52486




Bifidobacterium breve CECT 7263


Bifidobacterium longum subsp. longum




Bifidobacterium breve DPC 6330


Bifidobacterium longum subsp. longum 1-5B




Bifidobacterium breve DSM 20213 = JCM 1192


Bifidobacterium longum subsp. longum 1-6B




Bifidobacterium longum subsp. longum 17-1B


Bifidobacterium sp. 234




Bifidobacterium longum subsp. longum 2-2B


Bifidobacterium sp. 265




Bifidobacterium longum subsp. longum 35B


Bifidobacterium sp. 266




Bifidobacterium longum subsp. longum 44B


Bifidobacterium sp. 27




Bifidobacterium longum subsp. longum 7-IB


Bifidobacterium sp. 272




Bifidobacterium longum subsp. longum ATCC 55813


Bifidobacterium sp. 283




Bifidobacterium longum subsp. longum BBMN68


Bifidobacterium sp. 286




Bifidobacterium longum subsp. longum CECT 7347


Bifidobacterium sp. 316




Bifidobacterium longum subsp. longum CMCC P0001


Bifidobacterium sp. 320




Bifidobacterium longum subsp. longum F8


Bifidobacterium sp. 323




Bifidobacterium longum subsp. longum GT15


Bifidobacterium sp. 33




Bifidobacterium longum subsp. longum JCM 1217


Bifidobacterium sp. 343




Bifidobacterium longum subsp. longum JDM301


Bifidobacterium sp. 344




Bifidobacterium longum subsp. longum KACC 91563


Bifidobacterium sp. 360




Bifidobacterium longum subsp. suis


Bifidobacterium sp. 397




Bifidobacterium magnum


Bifidobacterium sp. 401




Bifidobacterium magnum DSM 20222


Bifidobacterium sp. 434




Bifidobacterium merycicum


Bifidobacterium sp. 445




Bifidobacterium minimum


Bifidobacterium sp. 470




Bifidobacterium minimum DSM 20102


Bifidobacterium sp. 471




Bifidobacterium mongoliense


Bifidobacterium sp. 65947




Bifidobacterium pseudocatenulatum


Bifidobacterium sp. 69




Bifidobacterium pseudocatenulatum D2CA


Bifidobacterium sp. 7101




Bifidobacterium pseudocatenulatum DSM 20438 - JCM 1200


Bifidobacterium sp. 77




Bifidobacterium pseudolongum


Bifidobacterium sp. 84




Bifidobacterium pseudolongum AGR2145


Bifidobacterium sp. 98




Bifidobacterium pseudolongum subsp. globosum


Bifidobacterium sp. Al




Bifidobacterium pseudolongum subsp. pseudolongum


Bifidobacterium sp. Al 1




Bifidobacterium psychraerophilum


Bifidobacterium sp. Al 5




Bifidobacterium pullorum


Bifidobacterium sp. A24




Bifidobacterium pullorum ATCC 49618


Bifidobacterium sp. A30




Bifidobacterium reuteri


Bifidobacterium sp. Aabbtol9




Bifidobacterium ruminantium


Bifidobacterium sp. Aahmro6




Bifidobacterium saeculare


Bifidobacterium sp. Aahmto9




Bifidobacterium saguini


Bifidobacterium sp. Acbbto5




Bifidobacterium scardovii


Bifidobacterium sp. Achmrol 1




Bifidobacterium scardovii JCM 12489


Bifidobacterium sp. AcjBFl




Bifidobacterium simiae


Bifidobacterium sp. AcjBFlO




Bifidobacterium stellenboschense


Bifidobacterium sp. AcjBFl 1




Bifidobacterium stercoris


Bifidobacterium sp. AcjBF2




Bifidobacterium subtile


Bifidobacterium sp. AcjBF3




Bifidobacterium subtile DSM 20096


Bifidobacterium sp. AcjBF4




Bifidobacterium thermaeidophilum


Bifidobacterium sp. AcjBF5




Bifidobacterium thermacidophilum subsp. porcinum


Bifidobacterium sp. AcjBF6




Bifidobacterium thermacidophilum subsp. thermacidophilum


Bifidobacterium sp. AcjBF7




Bifidobacterium thermacidophilum subsp. thermacidophilum DSM


Bifidobacterium sp. AcjBF8



15837

Bifidobacterium sp. AcjBF9




Bifidobacterium thcrmophilum


Bifidobacterium sp. Adhmto 10




Bifidobacterium Ihermophilum RBL67


Bifidobacterium sp. AFB22-4




Bifidobacterium tsurumiense


Bifidobacterium sp. Afporl 1




Bifidobacterium tsurumiense DSM 17777


Bifidobacterium sp. Afpor3




Bifidobacterium sp.


Bifidobacterium sp. Afpotol9




Bifidobacterium sp. 103


Bifidobacterium sp. AGR2158




Bifidobacterium sp. 108


Bifidobacterium sp. Alhonro l




Bifidobacterium sp. 11-5-G


Bifidobacterium sp. Ammopor6




Bifidobacterium sp. 113


Bifidobacterium sp. Ammpo1R4




Bifidobacterium sp. 120


Bifidobacterium sp. AmsbbiTO




Bifidobacterium sp. 126


Bifidobacterium sp. Amsbbt12




Bifidobacterium sp. 129


Bifidobacterium sp. Amshmr9




Bifidobacterium sp. 12147BFAA


Bifidobacterium sp. Amshor11




Bifidobacterium sp. 138


Bifidobacterium sp. Anbbr2




Bifidobacterium sp. 150


Bifidobacterium sp. Anuhmto12




Bifidobacterium sp. 17


Bifidobacterium sp. B4




Bifidobacterium sp. 172


Bifidobacterium sp. BBDP69




Bifidobacterium sp. 176


Bifidobacterium sp. BcRW10




Bifidobacterium sp. 182


Bifidobacterium sp. Bin2




Bifidobacterium sp. 197


Bifidobacterium sp. Bin7




Bifidobacterium sp. 202


Bifidobacterium sp. Bisn6




Bifidobacterium sp. 215


Bifidobacterium sp. Bma6




Bifidobacterium sp. 216


Bifidobacterium sp. CB38




Bifidobacterium sp. CB8


Bifidobacterium sp. M45




Bifidobacterium sp. CFAR 172


Bifidobacterium sp. M7




Bifidobacterium sp. CJ59


Bifidobacterium sp. Mbobb2r3




Bifidobacterium sp. CJ75


Bifidobacterium sp. Mbobb2t2




Bifidobacterium sp. CS16


Bifidobacterium sp. Mbpor2




Bifidobacterium sp. CS2


Bifidobacterium sp. MSTE12




Bifidobacterium sp. CS30


Bifidobacterium sp. MSX5B




Bifidobacterium sp. CWCAST32


Bifidobacterium sp. MW-222




Bifidobacterium sp. CWCAST40


Bifidobacterium sp. MW-613




Bifidobacterium sp. CWSAB40


Bifidobacterium sp. MW-623




Bifidobacterium sp. CWSAB6


Bifidobacterium sp. MW-81




Bifidobacterium sp. DJF_RP64kl


Bifidobacterium sp. N33




Bifidobacterium sp. DJF WC44


Bifidobacterium sp. oral strain A32ED




Bifidobacterium sp. DPTE6


Bifidobacterium sp. oral strain H6-M4




Bifidobacterium sp. DPVI-TET3


Bifidobacterium sp. PB24




Bifidobacterium sp. DPVI-TET6


Bifidobacterium sp. PEB0163




Bifidobacterium sp. F-10


Bifidobacterium sp. PFGE 14




Bifidobacterium sp. F-ll


Bifidobacterium sp. PFGE 18




Bifidobacterium sp. F2


Bifidobacterium sp. PFGE 8




Bifidobacterium sp. F8


Bifidobacterium sp. PFGE 9a




Bifidobacterium sp. G29


Bifidobacterium sp. PG10




Bifidobacterium sp. GC61


Bifidobacterium sp. PG12A




Bifidobacterium sp. group 1-3


Bifidobacterium sp. PG12B




Bifidobacterium sp. group II-3


Bifidobacterium sp. PG13




Bifidobacterium sp. group TII-3


Bifidobacterium sp. PG1 5




Bifidobacterium sp. hl2


Bifidobacterium sp. PG18




Bifidobacterium sp. HGAT1


Bifidobacterium sp. PG19




Bifidobacterium sp. HGAT10


Bifidobacterium sp. PG2




Bifidobacterium sp. HGAT2


Bifidobacterium sp. PG22




Bifidobacterium sp. HGAT3


Bifidobacterium sp. PG30




Bifidobacterium sp. HGAT4


Bifidobacterium sp. PG9




Bifidobacterium sp. HGAT5


Bifidobacterium sp. PL1




Bifidobacterium sp. HGAT6


Bifidobacterium sp. S-10




Bifidobacterium sp. HGAT7


Bifidobacterium sp. S13-05




Bifidobacterium sp. HGAT8


Bifidobacterium sp. S18-11




Bifidobacterium sp. HGAT9


Bifidobacterium sp. SLPYG-1




Bifidobacterium sp. Hma3


Bifidobacterium sp. SMst02




Bifidobacterium sp. HMLN1


Bifidobacterium sp. SRW-001




Bifidobacterium sp. HMLN12


Bifidobacterium sp. SRW-002




Bifidobacterium sp. HMLN13


Bifidobacterium sp. SRW-003




Bifidobacterium sp. HMLN14


Bifidobacterium sp. SRW-004




Bifidobacterium sp. HMLN5


Bifidobacterium sp. Tbbto10




Bifidobacterium sp. HMLN8


Bifidobacterium sp. Thsr10




Bifidobacterium sp. HMSFfl


Bifidobacterium sp. Thsr18




Bifidobacterium sp. HMSH2


Bifidobacterium sp. Thsr2




Bifidobacterium sp. HMSH5


Bifidobacterium sp. TM-7




Bifidobacterium sp. IR007-108


Bifidobacterium sp. Trm9




Bifidobacterium sp. IR007-113

environmental samples



Bifidobacterium sp. IR007-15


Bifidobacterium adolescentis CAG:119




Bifidobacterium sp. IR007-57


Bifidobacterium bifidum CAG:234




Bifidobacterium sp. IR007-93


Bifidobacterium longum CAG:69




Bifidobacterium sp. IR007-94


Bifidobacterium pscudocatcnulatum CAG:263




Bifidobacterium sp. IS03519


Bifidobacterium sp. enrichment culture DGGE gel band 6




Bifidobacterium sp. JCM 6439


Bifidobacterium sp. enrichment culture DGGE gel band 7




Bifidobacterium sp. JCM 7013


Bifidobacterium sp. oral clone 5RH-30




Bifidobacterium sp. JCM 7022


Bifidobacterium sp. oral clone CX010




Bifidobacterium sp. JCM 7023

uncultured Bifidobacterium sp.



Bifidobacterium sp. JCM 7027

uncultured Bifidobacterium sp. 1-2A



Bifidobacterium sp. JCM 7028

uncultured Bifidobacterium sp. 1-2B



Bifidobacterium sp. JCM 7042

uncultured Bifidobacterium sp. 1-5A



Bifidobacterium sp. JEMLUCVII-1

uncultured Bifidobacterium sp. 13D



Bifidobacterium sp. JEMLUCVIII-4

uncultured Bifidobacterium sp. 15A



Bifidobacterium sp. LISLUCII-P2

uncultured Bifidobacterium sp. 15B



Bifidobacterium sp. LISLUCIII-2

uncultured Bifidobacterium sp. 15D



Bifidobacterium sp. LISLUCIII-P2

uncultured Bifidobacterium sp. 16B



Bifidobacterium sp. LISPASI-P3

uncultured Bifidobacterium sp. 16C



Bifidobacterium sp. LLS001

uncultured Bifidobacterium sp. 16F



Bifidobacterium sp. LUCL-P3

uncultured Bifidobacterium sp. 2-3A



Bifidobacterium sp. LUCL-W4

uncultured Bifidobacterium sp. 3-3A



Bifidobacterium sp. M24

uncultured Bifidobacterium sp. 3-4A


uncultured Bifidobacterium sp. 3-4B
uncultured Bifidobacterium sp. 9A


uncultured Bifidobacterium sp. 7B
uncultured Bifidobacterium sp. 9B


uncultured Bifidobacterium sp. 7G
uncultured Bifidobacterium sp. 9C







Genus: Acidopholus









Lactobacillus acidophilus










Claims
  • 1. A method of delivering one or more therapeutic agents to a tumor in a subject comprising administering to the subject a composition comprising at least one non-pathogenic bacterial cell, wherein the non-pathogenic bacterial cell comprises at least a first, a second, and a third nucleic acid sequence, the first and second nucleic acid sequences each comprising a lux gene operably linked to the third nucleic acid sequence, the third nucleic acid encoding at least one therapeutic agent comprising a cellular toxin with at least 85% sequence identity to the amino acid sequence encoded by SEQ ID NO: 6, wherein each lux gene is an exogenous inducible promoter responsive to at least one stimuli and the at least one stimuli comprises the presence of a certain density or a certain number of bacterial cells comprising the first and second nucleic acid sequences.
  • 2. The method of claim 1, wherein the method further comprises a step of administering one or more stimuli external to the subject in order to induce expression of the at least one therapeutic agent in the subject.
  • 3. The method of claim 1, wherein the method does not comprise administering any stimuli external to the body of the subject in order to induce expression of the at least one therapeutic agent in the subject.
  • 4. The method of claim 1, wherein the method further comprises a step of measuring the presence, absence or quantity of the therapeutic agent in the subject one or more times subsequent to administration of the composition.
  • 5. The method of claim 1, wherein the at least one non-pathogenic bacterial cell is one or a combination of bacterial cells from a genus selected from the group consisting of Salmonella, Escherichia, Firmicutes, Bacteroidetes, Lactobacillus, and Bifidobacteria.
  • 6. The method of claim 1, wherein the at least one non-pathogenic bacterial cell further comprises a fourth exogenous nucleic acid sequence, wherein the fourth exogenous nucleic acid sequence encodes an amino acid sequence that directs targeting of the at least one therapeutic to a cancer cell or a cell associated with a hyperproliferative disorder.
  • 7. The method of claim 6, wherein the fourth exogenous nucleic acid sequence encodes an amino acid sequence with at least 85% sequence identity to the amino acid sequence encoded by SEQ ID NO: 5.
  • 8. The method of claim 1, wherein the lux genes are responsive to the presence of AHL.
  • 9. The method of claim 1, wherein the at least one stimuli comprises the presence of a biofilm of bacteria.
  • 10. The method of claim 1, wherein the therapeutic agent is a fusion protein encoded by the third nucleic acid sequence, the fusion protein comprising at least a first and second moiety, wherein the first moiety comprises an amino acid sequence with at least 90% sequence identity to the amino acid sequence encoded by SEQ ID NO: 6 and the second moiety is a targeting sequence.
  • 11. The method of claim 1, wherein the at least one bacterial cell comprises a plasmid with at least 95% sequence identity to SEQ ID NO: 1.
  • 12. The method of claim 1, wherein the at least one bacterial cell comprises a plasmid consisting of SEQ ID NO: 1.
  • 13. The method of claim 1, wherein the at least one bacterial cell comprises at least two lux genes operably linked to one or more cellular toxin comprising at least 95% sequence identity to the amino acid sequence encoded by SEQ ID NO: 6; wherein the at least one bacterial strain is an attenuated bacterial cell from the genus chosen from: Salmonella, Escherichia or Lactobacillus; andwherein the at least one bacterial cell is capable of colonizing tumor cells or cancer cells, or cell associated with a hyperproliferative disorder.
CROSS REFERENCE TO RELATED APPLICATIONS

This application is a continuation of U.S. application Ser. No. 14/428,341, filed Mar. 13, 2015, which is a United States National Stage filing under 35 U.S.C. § 371 of International PCT Application Serial No. PCT/US2013/059832, filed Sep. 13, 2013, that claims priority to U.S. Provisional Application Ser. No. 61/700,663, filed Sep. 13, 2012, entitled “Programmable Drug Delivery Profiles Of Tumor-Targeted Bacteria, each of which is incorporated herein by reference in its entirety.

US Referenced Citations (11)
Number Name Date Kind
5633274 Halperin et al. May 1997 A
6428968 Molnar-Kimber et al. Aug 2002 B1
6693112 Smith Feb 2004 B2
6849272 Langer et al. Feb 2005 B1
7655444 Herman et al. Feb 2010 B2
8257714 Aylsworth et al. Sep 2012 B2
8343498 Alexis et al. Jan 2013 B2
8466110 Dewhirst et al. Jun 2013 B2
9994809 Bhatia Jun 2018 B2
20110195847 Arrach et al. Aug 2011 A1
20110293567 Eils et al. Dec 2011 A1
Foreign Referenced Citations (1)
Number Date Country
2011066541 Jun 2011 WO
Non-Patent Literature Citations (40)
Entry
Anderson et al., Environmentally controlled invasion of cancer cells by engineered bacteria. J Mol Biol. Jan. 27, 2006;355(4):619-27.
Bermúdez-Humarán et al., Lactococci and lactobacilli as mucosal delivery vectors for therapeutic proteins and DNA vaccines. Microb Cell Fact. Aug. 30, 2011;10 Suppl 1:S4. 10 pages.
Chen et al., Application of a proapoptotic peptide to intratumorally spreading cancer therapy. Cancer Res. Feb. 15, 2013;73(4):1352-61.
Cronin et al., High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting. PLoS One. 2012;7(1):e30940. 11 pages.
Dai et al., Construction of an inducible cell-communication system that amplifies Salmonella gene expression in tumor issue. Biotechnol Bioeng. Jun. 2013;110(6):1769-81.
Dang et al., Combination bacteriolytic therapy for the treatment of experimental tumors. Proc Natl Acad Sci U S A. Dec. 18, 2001;98(26):15155-60.
Danino et al., A synchronized quorum of genetic clocks. Nature. Jan. 21, 2010;463(7279):326-30.
Danino et al., In Vivo Gene Expression Dynamics of Tumor-Targeted Bacteria. ACS Synth Biol. Oct. 19, 2012;1(10):465-470.
Di Cagno et al., Quorum sensing in sourdough Lactobacillus plantarum DC400: induction of plantaricin A (PlnA) under co-cultivation with other lactic acid bacteria and effect of PlnA on bacterial and Caco-2 cells. Proteomics. Jun. 2010;10(11):2175-90.
Egland et al., Quorum sensing in Vibrio fischeri: elements of the luxl promoter. Mol Microbiol. Feb. 1999;31(4):1197-204.
Forbes, Engineering the perfect (bacterial) cancer therapy. Nat Rev Cancer. Nov. 2010;10(11):785-94.
Guo et al., Targeting tumor gene by shRNA-expressing Salmonella-mediated RNAi. Gene Ther. Jan. 2011;18(1):95-105.
Hasty et al., Engineered gene circuits. Nature. Nov. 14, 2002;420(6912):224-30.
Heimann et al., Continuous intravenous administration of live genetically modified Salmonella typhimurium in patients with metastatic melanoma. J Immunother. Mar.-Apr. 2003;26(2):179-80.
Hoffman, Tumor-seeking Salmonella amino acid auxotrophs. Curr Opin Biotechnol. Dec. 2011;22(6):917-23.
Hohmann et al., Evaluation of a phoP/phoQ-deleted, aroA-deleted live oral Salmonella typhi vaccine strain in human volunteers. Vaccine. Jan. 1996;14(1):19-24.
Huang et al., On the importance and mechanisms of burst release in matrix-controlled drug delivery systems. J Control Release. Jun. 15, 2001;73(2-3):121-36.
Leschner et al., Tumor invasion of Salmonella enterica serovar Typhimurium is accompanied by strong hemorrhage promoted by TNF-alpha. PLoS One. Aug. 20, 2009;4(8):e6692. 11 pages.
Li et al., Salmonella typhimurium strain SL7207 induces apoptosis and inhibits the growth of HepG2 hepatoma cells in vitro and in vivo. Acta Pharmaceutica Sinica B. 2012:2(6):562-568.
Mangwani et al., Bacterial quorum sensing: functional features and potential applications in biotechnology. J Mol Microbiol Biotechnol. 2012;22(4):215-27.
Nguyen et al., Genetically engineered Salmonella typhimurium as an imageable therapeutic probe for cancer. Cancer Res. Jan. 1, 2010;70(1):18-23.
O'Brien et al., Modeling synthetic gene oscillators. Math Biosci. Mar. 2012;236(1):1-15.
Paton et al., Bioengineered microbes in disease therapy. Trends Mol Med. Jul. 2012;18(7):417-25.
Patyar et al., Bacteria in cancer therapy: a novel experimental strategy. J Biomed Sci. Mar. 23, 2010;17(1):21. 9 pages.
Pawelek et al., Tumor-targeted Salmonella as a novel anticancer vector. Cancer Res. Oct. 15, 1997;57(20):4537-44.
Pecota et al., Combining the hok/sok, parDE, and pnd Postsegregational Killer Loci to Enhance Plasmid Stability. Applied and Environmental Microbiology. May 1997;63(5):1917-1924.
Prindle et al., A sensing array of radically coupled genetic ‘biopixels’. Nature. Dec. 18, 2011;481(7379):39-44.
Prindle et al., Genetic Circuits in Salmonella typhimurium. ACS Synth Biol. Oct. 19, 2012;1(10):458-464.
Ryan et al., Use of bacteria in anti-cancer therapies. Bioessays. Jan. 2006;28(1):84-94.
Shrivastava et al., Identification and functional characterization of gene components of Type VI Secretion system in bacterial genomes. PLoS One. Aug. 13, 2008;3(8):e2955. 11 pages.
Stewart et al., The Population Biology of Bacterial Plasmids: A PRIORI Conditions for the Existence of Conjugationally Transmitted Factors. Genetics. Oct. 1977;87(2):209-28.
Toso et al., Phase I study of the intravenous administration of attenuated Salmonella typhimurium to patients with metastatic melanoma. J Clin Oncol. Jan. 1, 2002;20(1):142-52.
Wall et al., Targeting tumors with Salmonella typhimurium—potential for therapy. Oncotarget. Dec. 2010;1(8):721-8.
Wu, Incorporation of Bacterial Quorum Sensing in Synthetic Biology. Dissertation. 99 pages, (2012).
Yang et al., Designer Biosystem with Regulated Insulin Expression and Glucose Auto-Sensing for Diabetes. International Journal of Systems and Synthetic Biology. Jun. 2010;1(1):135-145.
Yu et al., Visualization of tumors and metastases in live animals with bacteria and vaccinia virus encoding light-emitting proteins. Nat Biotechnol. Mar. 2004;22(3):313-20.
Zhang et al., Galangin and TRAIL cooperate to suppress A549 lung cancer proliferation via apoptosis and p38 MAPK activation. Acta Pharmaceutica Sinica B. 2012:2(6):569-574.
Zhao et al., Targeted therapy with a Salmonella typhimurium leucine-arginine auxotroph cures orthotopic human breast tumors in nude mice. Cancer Res. Aug. 1, 2006;66(15):7647-52.
Zhao et al., Tumor-targeting bacterial therapy with amino acid auxotrophs of GFP-expressing Salmonella typhirnunum. Proc Natl Acad Sci U S A. Jan. 18, 2005;102(3):755-60.
Zhou et al., Tumor-targeted delivery of TAT-Apoptin fusion gene using Escherichia coli Nissle 1917 to colorectal cancer Med Hypotheses. Apr. 2011;76(4):533-4.
Related Publications (1)
Number Date Country
20190078050 A1 Mar 2019 US
Provisional Applications (1)
Number Date Country
61700663 Sep 2012 US
Continuations (1)
Number Date Country
Parent 14428341 US
Child 16005390 US