Claims
- 1. A composition useful for regulating protein degradation comprising:
a targeting moiety for recognizing a target protein, and a ubiquitin pathway protein binding moiety for recognizing a ubiquitin pathway protein, coupled to the targeting moeity.
- 2. The composition of claim 1, wherein the ubiquitin pathway protein binding moiety is covalently coupled to the targeting moiety.
- 3. The composition of claim 1, wherein the composition ubiquitinates the target protein.
- 4. The composition of claim 1, wherein the ubiquitin pathway protein binding moiety is a ligand for a ubiquitin protein ligase.
- 5. The composition of claim 1, wherein the ubiquitin pathway protein binding moiety is selected from the group consisting of an IkBa peptide, ZAP-70 peptide, N-end rule peptide, and hydroxyproline-containing peptide.
- 6. The composition of claim 1, wherein the ubiquitin pathway protein is a ubiquitin protein ligase.
- 7. The composition of claim 1, wherein the ubiquitin pathway protein is an E3 protein.
- 8. The composition of claim 7, wherein the targeting moiety is a small molecule receptor.
- 9. The composition of claim 8, wherein the small molecule receptor is penicillin binding protein.
- 10. The composition of claim 1, wherein the ubiquitin pathway protein is an SCF complex.
- 11. The composition of claim 1, wherein the ubiquitin pathway protein is a homologue of a ubiquitin protein ligase and a component of a ubiquitin-like pathway for transferring a ubiquitin-like modifying polypeptide.
- 12. The composition of claim 11, wherein the ubiquitin-like modifying polypeptide is SUMO, Nedd8, APG12 or ISG15/UCRP.
- 13. The composition of claim 1, wherein the target protein is selected from the group consisting of MetAP-2, androgen receptor, estrogen receptor, myc, cyclin B, Ras, and cyclin E.
- 14. The composition of claim 1 further comprising a cell delivering moiety.
- 15. The composition of claim 14, wherein the cell delivering moiety is tat peptide or a hydrophobic compound.
- 16. A library comprising a plurality of compositions wherein each composition has a formula of
A-B, wherein A is a ubiquitin pathway protein binding moiety and B is a member of a molecular library, wherein A is covalently coupled to B, and wherein the ubiquitin pathway protein binding moiety recognizes a ubiquitin pathway protein.
- 17. The library of claim 16, wherein the molecular library is a combinatorial library.
- 18. The library of claim 16, wherein the molecular library is a ligand library.
- 19. The library of claim 16, wherein the molecular library is a small molecule library.
- 20. The library of claim 16, wherein the ubiquitin pathway protein binding moiety is selected from the group consisting of an IkBa peptide, ZAP-70 peptide, N-end rule peptide, and hydroxyproline-containing peptide.
- 21. The library of claim 16, wherein the ubiquitin pathway protein is a ubiquitin protein ligase.
- 22. The library of claim 16, wherein the ubiquitin pathway protein is an E3 protein.
- 23. The library of claim 16, wherein the ubiquitin pathway protein is a SCF complex.
- 24. The library of claim 16, wherein the ubiquitin pathway protein is a homologue of a ubiquitin protein ligase and a component of a ubiquitin-like pathway for transferring a ubiquitin-like modifying polypeptide.
- 25. The library of claim 24, wherein the ubiquitin-like modifying polypeptide is SUMO, Nedd8, APG12 or ISG15/UCRP.
- 24. The library of claim 16, wherein the member of a molecular library is a target protein binding element.
- 25. The library of claim 24, wherein the target protein binding element is a chemical moiety, a peptide, or a nucleic acid molecule or derivative thereof.
- 26. The method of claim 24, wherein the target protein binding element is predetermined.
- 27. The method of claim 24, wherein the target protein binding element is a random moiety in the library.
- 28. A method of ubiquitinating a target protein in a cell comprising administering a composition comprising a ubiquitin pathway protein binding moiety and a targeting moiety, wherein the ubiquitin pathway protein binding moiety is coupled to the targeting moiety and wherein the ubiquitin pathway protein binding moiety recognizes a ubiquitin pathway protein and the targeting moiety recognizes the target protein.
- 29. The method of claim 28, wherein the ubiquitin pathway protein binding moiety is selected from the group consisting of an IkBa peptide, ZAP-70 peptide, N-end rule peptide, and hydroxyproline-containing peptide.
- 30. The method of claim 28, wherein the ubiquitin pathway protein is a ubiquitin protein ligase.
- 31. The method of claim 28, wherein the ubiquitin pathway protein is an E3 protein.
- 32. The method of claim 28, wherein the ubiquitin pathway protein is a SCF complex.
- 33. The method of claim 28, wherein the target protein is selected from the group consisting of MetAP-2, androgen receptor, estrogen receptor, myc, cyclin B, Ras, and cyclin E.
Priority Claims (1)
Number |
Date |
Country |
Kind |
PCT/US01/42158 |
Sep 2001 |
WO |
|
CROSS REFERENCE TO RELATED APPLICATIONS
[0001] This application is a continuation-in-part application of U.S. Ser. No. 09/953,473, filed Sep. 10, 2001, and also claims priority under 35 U.S.C. 119(e) to U.S. Provisional Application No. 60/231,359, filed on Sep. 8, 2000, both of which are incorporated herein by reference.
Provisional Applications (1)
|
Number |
Date |
Country |
|
60231359 |
Sep 2000 |
US |
Continuation in Parts (1)
|
Number |
Date |
Country |
Parent |
09953473 |
Sep 2001 |
US |
Child |
10299203 |
Nov 2002 |
US |