Recombinant bovine herpesvirus type 1 vaccines

TECHNICAL FIELD
The present invention relates generally to the prevention of disease in cattle. More particularly, the instant invention is directed to the production and use of attenuated and marked bovine herpesvirus 1 (BHV-1) vaccines that protect cattle from BHV-1 infection. The present invention is further directed towards the use of modified BHV-1 as a vector for the expression of other bacterial or viral genes and the use of these vaccines for the protection of cattle from disease.
BACKGROUND
Bovine herpesvirus type 1 is an economically significant pathogen of cattle. BHV-1, which is also known as infectious bovine rhinotracheitis virus, causes severe respiratory infections, conjunctivitis, vulvovaginitis, abortions, encephalitis, and generalized systemic infections. If an animal recovers from a primary infection, the virus remains in the host in a latent state. Reactivation of the virus can be provoked by certain endogenous or exogenous physical modifications in the animal, or experimentally by treatment of the animal with glucocorticoids such as dexamethasone.
In an effort to control BHV-1 infections, conventional killed-virus and attenuated live-virus vaccines have been developed. Current modified live virus vaccines may cause immunosuppression. No recombinant forms of BHV-1, specifically attenuated by genetic engineering are currently licensed for use is cattle. While currently available vaccines appear to induce some level of protection in cattle, the level of immunity is well below that necessary to afford complete or near-complete protection. For example, the present vaccines do not always prevent the establishment of a latent infection by a virulent field strain of BHV-1. See, e.g., Gerber et al. (1978) Am. J. Vet. Res. 39:753-760; Jericho et al. (1983) Can. J. Com. Med. 47:133-139; Pastoret et al. (1980) Infect. Immun. 29:483-488.
Babiuk et al. (1987) Virology 159:57-66 relates to the purification of gI, gIII and gIV from virus-infected cell lysates, effective subunit vaccines and the protection of cattle from disease. This reference also discloses that gI of BHV-1 corresponds to gB of herpes simplex virus (HSV); gIII corresponds to gC; and gIV corresponds to gD. Purified gI, gIII and gIV have been shown to induce high levels of antibody in cattle which could neutralize virus and participate in antibody-dependent cell cytotoxicity of BHV-1 cells. The purified glycoproteins were also shown to protect cattle from disease. Babiuk et al. (1987) Virology 159:57-66. van Drunen Littel-van den Hurk et al. (1990) Vaccine 8:358-368 confirmed the protectivity of gI, gIII and gIV and studied the epitope specificity of the immune response to the glycoprotein vaccines. Hughes et al. (1988) Arch. Virol. 103:47-60 identified three neutralizing antigenic domains on gIV.
Mayfield et al. (1983) J. Virol. 47:259-264 discloses the cloning of a BHV-1 strain and a restriction endonuclease map. Fitzpatrick et al. (1989) Virology 173:46-57, describe the nucleotide sequence of gIII. Pachl et al. (1987) J. Virol. 61:315-325 describe the recombinant expression of a glycoprotein from the human pathogen HSV-1. van Drunen Littel-van den Hurk et al. (1989) J. Virol. 63:2159-2168 disclose the expression of gI and GIII in a vaccinia virus vector. The recombinant vectors elicited a neutralizing antibody response in cattle immunized with the same.
Liang et al. (1991a) J. Virol. 65(3):1124-1132 report that BHV-1 attachment to permissive cells is mediated by its major glycoproteins gI, gIII and gIV, and Liang et al. (1991b) J. Virol. 65(10):5553-5557 report that pseudorabies virus gIII and BHV-1 gIII share complementary functions.
Liang et al. (1992) Virol. 189:629-639 describe a glycoprotein gIII.sup.- BHV-1 mutant expressing .beta.-galactosidase, the role of gIII in virus infectivity and its use as a vector for mucosal immunization.
Kit et al. (1991) Vaccine, 9:564-572 report the expression of foot and mouth disease epitopes via a BHV-1 gIII.sup.- based viral vector in which the signal sequence was deleted. Lawrence et al. (1990) Abstracts of the 15th International Herpes Virus Workshop, p. 432, disclose a BHV-1 recombinant expressed vesicular stomatitis virus glycoprotein G which is not transported to the cell surface.
Pyles et al. (1990) Abstracts of the 15th International Herpes Virus Workshop, p. 164, disclose the role of deoxyuridine triphosphatase in HSV-1 pathogenesis. McGeoch et al. (1990) Nucl. Acid Res. 18(14):4105-4109 report protein sequence comparisons which show that pseudoproteases encoded by poxviruses and certain retroviruses belong to the deoxyuridine triphosphatase family.
van Zijl et al. (1991) J. Virol. 65(5):2761-2765 describe the expression of hog cholera virus envelope glycoprotein E1 by an attenuated live pseudorabies virus which afforded swine protection against both pseudorabies and hog cholera.
Cattle are subject to numerous other viral, bacterial, fungal, and parasitic infections of the respiratory, enteric, and genital tracts (Babiuk et al. (1988) Adv. Virus Res., 35:219-249) for which vaccines either do not exist or do not adequately protect against infection. A common characteristic of non-protective vaccines is their failure to stimulate the development of mucosal immunity. The lack of stimulation may be due to a failure to specifically direct antigens towards the functionally- and anatomically-distinct "common mucosal immune system" (Husband, A. J. (1987) Vet Immunol. Immunopathol., 17:357-365) and/or the use of inappropriate adjuvants which fail to specifically stimulate cells of the common mucosal immune system.
Karupiah et al. (November 1990) J. Exp. Med. 172:1495-1503 report that gamma-interferon is involved in the recovery of athymic nude mice from treatment with recombinant vaccinia virus encoding murine interleukin-2 (IL-2). Ramshaw et al. (1987) Nature 329:545-546 disclose the recovery of immunodeficient mice from the same treatment. Flexner et al. (1987) Nature 330:259-262 disclose the prevention of vaccinia virus infection in immunodeficient mice by vector-directed IL-2 expression. Giavendon et al. (1992) Proc. Natl. Acad. Sci. USA 89:3409-3413 report that vaccinia virus recombinants that express chimeric proteins comprising human immunodeficiency virus peptide and gamma-interferon are attenuated for nude mice.
Sambhi et al. (1991) Proc. Natl. Acad. Sci. USA 88:4025-4029 report that the local production of tumor necrosis factor encoded by recombinant vaccinia virus is effective in controlling viral replication in vivo.
A new generation of natural adjuvants have been developed by cloning and expression of the endogenous cytokines which normally regulate the immune responses of cattle. It has been shown that several of these compounds, when administered in combination with vaccines, may have immuno-stimulating activity. No reports have yet described their possible effects on the common mucosal immune system of cattle. Moreover, there have been no reports that describe engineering of recombinant bovine viruses to produce immunomodulatory cytokines during the natural course of an infection with such a recombinant virus.
SUMMARY OF THE INVENTION
It is therefore an object of the present invention to provide vaccine compositions comprising mutant live-attenuated BHV-1 and a pharmaceutically acceptable vehicle that can be used to simultaneously immunize cattle against infection with wild-type BHV-1. Another object of the present invention is to provide a BHV-1 vector containing at least one functional gene from a bacterial or viral pathogen other than BHV-1 and/or a cytokine gene optionally under the control of strong promoters normally associated with the highly expressed BHV-1 protein coding genes.
Yet another object of the present invention is to provide recombinant vectors comprising DNA coding sequences wherein at least one non-essential BHV-1 gene is deleted and optionally replaced by a heterologous coding sequence encoding a foreign gene optionally under the control of a strong promoter.
A further object of the present invention is to provide DNA constructs comprising expression cassettes comprised of DNA sequences encoding promoters, heterologous coding sequences and control sequences.
Another object of the present invention is to provide a vaccine composition comprising a pharmaceutically acceptable vehicle and a mutant BHV-1 virus wherein at least one essential BHV-1 gene is mutated.
Yet a further object of the present invention is to provide an immunoassay for determining the immune status of a bovine subject for BHV-1 comprising the steps of: (i) reacting a sample of said subject with reagents comprising gene products encoded by a deleted non-essential BHV-1 gene selected from the group consisting of gE, gX, gi, and dUTPase and with reagents comprising wild-type BHV-1 gene products; and (ii) distinguishing a subject immunized with the vaccine composition of claim 1, from a subject exposed to wild-type BHV-1 in the field.
Still another object of the present invention is to provide methods of treating or preventing BHV-1 infection in cattle.
In achieving these objects, there has been provided, in accordance with one aspect of the present invention, a vaccine composition comprising: (a) a pharmaceutically acceptable vehicle; and (b) a mutant bovine herpesvirus 1 (BHV-1) wherein (i) at least one non-essential gene of wild-type BHV-1 is deleted and optionally replaced with a gene selected from the group consisting of a foreign gene, a BHV-1 gene encoding a BHV-1 immunogen and a mutant analog of a gene encoding a BHV-1 immunogen; and wherein (ii) the replacement gene is optionally under the control of a strong promoter; and further wherein (iii) at least one essential gene of wild-type BHV-1 is optionally mutated.
Non-essential BHV-1 structural genes include those encoding a glycoprotein selected from the group consisting of gE, gX, gi or the like. Genes that encode products that regulate nucleic acid metabolism include genes encoding dUTPase and thymidine kinase (TK). Genes that encode products that regulate viral gene transcription include but are not limited to genes encoding V.sub.MW65. Essential genes include genes encoding capsid protein such as VP4 and tegument such as VP8 and V.sub.MW65.
In accordance with another aspect of the present invention, nucleotide sequences encoding a protein promoter substantially homologous and functionally equivalent to a promoter of a BHV-1 structural gene such as VP4, VP8, V.sub.MW65, gE, gX, gi, gI, gIV, or the like are provided.
In accordance with a further aspect of the present invention, DNA constructs are provided that comprise an expression cassette comprised of: (a) a DNA coding sequence for a polypeptide containing at least one antigenic determinant of a mutant analog of BHV-1 protein; and (b) control sequences operably linked to the DNA sequence whereby the coding sequence can be transcribed and translated in a host cell, and optionally at least one of the control sequences is heterologous to the coding sequence.
In accordance with still a further aspect of the present invention, recombinant vectors are provided which comprise a DNA coding sequence wherein at least one non-essential gene of BHV-1 is deleted and optionally replaced by a heterologous coding sequence encoding a foreign gene. The foreign gene can be under the control of an endogenous BHV-1 promoter such as a strong promoter normally associated with a structural gene encoding a BHV-1 protein such as VP4, VP8, gI, gIII, gIV and the like or an exogenous promoter such as the strong promoters normally associated with the bovine heat shock 70A gene, immediate early human cytomegalovirus gene or promoter responsive to the bacteriophage T7 RNA polymerase.
In accordance with yet a further aspect of the present invention, isolated nucleotide sequences encoding strong promoters normally associated with a BHV-1 protein coding genes are provided. Examples of such strong promoters include the strong promoters normally associated with the structural coding genes encoding BHV1 proteins such as VP4, VP8, gI, gIII, gIV and the like.
In accordance with still another aspect of the present invention, DNA constructs are provided which comprise an expression cassette comprised of (a) a DNA sequence encoding a strong promoter operably linked to a heterologous coding sequence and (b) a control sequence operably linked to the heterologous coding sequence whereby the coding sequence can be transcribed and translated in a host.
In accordance with another aspect of the present invention, vaccine compositions are provided wherein at least one non-essential BHV-1 gene is deleted.
In accordance with yet another aspect of the present invention, an immunoassay is provided for determining the absence, presence and/or concentration of antibodies directed against BHV-1 in a fluid sample such as bovine blood wherein a reagent comprising the gene product of a deleted non-essential BHV-1 is employed. Such an immunoassay can be used to determine the immune status of cattle immunized with a vaccine composition within the present invention and to distinguish animals producing antibodies directed against such a vaccine from animals producing antibodies directed against a wild-type strain of BHV1.
In accordance with yet a further aspect of the present invention, methods of treating or preventing BHV-1 infection in cattle are provided which comprise administering to the bovine host a therapeutically effective amount of a vaccine composition described above.
Other objects, features and advantages of the present invention will become apparent to those skilled in the art from the following detailed disclosure.

BRIEF DESCRIPTION OF THE FIGURES
FIG. 1A is the Genomic Map of BHV-1 Cooper strain and FIG. 1B shows the map location of the identified BHV-1 genes. In the BHV-1 genomic map, the vertical vertical lines designate HindIII restriction endonuclease sites (Mayfield et al. (1983) J. Virology 47:259-264). U.sub.L and U.sub.S are the "unique long" and "unique short" regions of the genome.
FIG. 2 (SEQ ID NO:1 and SEQ ID NO:2) is the DNA sequence and the deduced amino acid sequence of the V.sub.MW65 gene homolog of BHV-1.
FIG. 3A is a map of the gX/G (gX) gene insertion vector. A unique 300 bp Xho I subfragment was excised from the HindIII K fragment and replaced with a lac Z gene expression cassette (spear). pgC represents the BHV-1 gC (gIII) gene promoter. lac Z represents the E. coli lac Z gene coding sequence, beginning with the codon for the tenth amino acid of beta-galactosidase. PA represents an SV40 polyadenylation signal. The substituted HindIII K fragment was inserted at the HindIII restriction endonuclease site of pBR322.
FIG. 3B is a map of the gi gene insertion vector. The lac Z gene cassette described in FIG. 3A was inserted at the unique Not I sites present in the 1865 bp Sma I subclone of the HindIII K fragment. Thus, the lac Z cassette replaced a 300 bp Not I subfragment within the Sma I subclone. The substituted Sma I subfragment was cloned into the polylinker 26 backbone.
FIG. 3C is a map of the gE insertion vector. The lac Z gene cassette was flanked at its 3' end by a 775 bp HindIII-PvuII fragment isolated from the extreme left-hand end of the HindIII K fragment, and its 5' end by the 700 bp Sma I-Not I subfragment containing the 5' end o the gi gene. This same Sma I-Not I subfragment was used at the 3' end of the lac Z cassette in constructing the gi gene insertion vector (FIG. 3B). The insertion cassette was cloned into the polylinker 26 backbone.
FIG. 4A (SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, and SEQ ID NO:10) illustrates the design of degenerate PCR primers for amplifying a BHV-1 dUTPase gene fragment. Oligonucleotides 1, 2 and 3 were used as the 5' primers, and oligonucleotides 4 and 5 were used as the 3' primers. The bold letters at the bottom of the figure represent the degenerate nucleotides as indicated.
FIG. 4B shows the profiles of PCR products electrophoretically separated on a 1% agarose gel. The primers used were: oligonucleotides 1 and 4 (lane a), 2 and 4 (lane b), 3 and 4 (lane c), 1 and 5 (lane d), 2 and 5 (lane e), and 3 and 5 (lane f).
FIG. 5 (SEQ ID NO:11 and SEQ ID NO:12) is the DNA sequence and the deduced amino acid sequence of BHV-1 dUTPase. The complete DNA sequence of the XhoI-SacII fragment as described in FIG. 6 and the deduced amino acid sequence are shown. A TATA box is indicated by the bold face letters and the relevant restriction endonuclease recognition sites are underlined.
FIG. 6 (SEQ ID NO:13 and SEQ ID NO:14) shows the DNA sequence and deduced amino acid sequence of the BHV-1 UL49.5 gene homolog. The DNA sequence represents the complementary strand of that shown in FIG. 5 and is numbered by setting the last nucleotide (1850) in FIG. 5 to -1. The arrow indicates the start codon and orientation of the dUTPase ORF.
FIG. 7 (SEQ ID NO:15 and SEQ ID NO:16) is the partial sequence of the BHV-1 VP4 gene promoter.
FIG. 8 is a map of the BHV-1 LacZ: LktA vector.
FIG. 9 is a map of the BHV-1 promoter trap vector (pSD113TRAPgC). Randomly generated DNA fragments can be inserted into the unique NcoI cloning site. Fragments inserted at this site reside in the same position normally occupied by the gIII (gC) gene promoter. The use of this plasmid and genomic DNA isolated from the gIII.sup.- BHV-1 in co-transfection experiments produces new recombinant viruses in which the randomly generated fragments reside immediately upstream from the gIII gene's coding sequence. Promoter activity associated with any of the randomly cloned fragments can be measured by black plaque assays, using gIII-specific monoclonal antibodies to detect expression of the gIII gene.
FIG. 10 shows LacZ gene expression driven by the vp8, gC, gIV, and IE promoters as measured by relative .beta.-galactosidase activity.
FIG. 11 (SEQ ID NO:17 and SEQ ID NO:18) is the nucleotide sequence and deduced amino acid sequence of BHV 1 UL49 homolog gene. The complete DNA sequence between the UL48 homolog gene and dUTPase gene (UL50 homolog) and the deduced amino acid sequence of the UL49 homolog gene are presented. Putative G-C box, TATA box and polyadenylation sinal sequence are indicated by the bold face letters. The arrows indicate the boundaries of UL50, UL49.5 and UL48 ORFs surrounding the UL49 homolog gene.
FIG. 12 (SEQ ID NO:19, SEQ ID NO:20, and SEQ ID NO:21) presents an amino acid sequence comparison of UL49 homolog genes of BHV 1, HSV 1 and VZV. The amino acid sequences of the indicated UL49 homolog genes were compared using the CLUSTAL program (Higgins and Sharp (1988) Gene 73:237-244). The amino acid residues which are identical among the sequences compared are indicated by asterisks and those which are similar are indicated by dots. The HSV 1 sequence was deducted from the UL49 ORF of strain 17 (McGeoch et al. (1988) J. Gen Virol. 69:1531-1574); the VZV sequence was deducted from VZV gene 9 (Davison and Scott (1986) J. Gen. Virol. 67:1759-1816).
FIG. 13 is a schematic representation of transfer vector used in generating the UL49 homolog gene deletion mutant and predicted genomic organization of the mutant virus.
FIG. 14 shows Southern blot analysis to verify the genomic configuration of the UL49 homolog gene deletion mutant.
FIG. 15 shows Northern blot analysis of viral transcripts.
FIG. 16 is a single-step growth curve of the wild type (wt) BHV 1 and UL49 homolog deletion mutant in MDBK cells.

DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
It has been discovered that vaccines comprising attenuated and marked live BHV-1 vaccines can protect cattle from BHV-1 infection. It has further been discovered that vaccines comprising modified BHV-1 used as a vector for the expression of other bacterial or viral genes can simultaneously protect cattle against BHV-1 and bacterial and other viral pathogens. Surprisingly, these vaccines are substantially more protective than prior art killed-virus and attenuated live-virus vaccines.
The practice of the present invention will employ, unless otherwise indicated, conventional virology, microbiology, molecular biology and recombinant DNA techniques within the skill of the art. Such techniques are explained fully in the literature. See, e.g., Sambrook et al., MOLECULAR CLONING: A LABORATORY MANUAL (2nd Edition, 1989); Maniatis et al., MOLECULAR CLONING: A LABORATORY MANUAL (1982); DNA CLONING: A PRACTICAL APPROACH, Vol. I & II (D. Glover, ed.); OLIGONUCLEOTIDE SYNTHESIS (N. Gait, ed., 1984); NUCLEIC ACID HYBRIDIZATION (B. Hames & S. Higgins, eds., 1985); TRANSCRIPTION AND TRANSLATION (B. Hames & S. Higgins, eds., 1984); ANIMAL CELL CULTURE (R. Freshney, ed., 1986); Perbal, A PRACTICAL GUIDE TO MOLECULAR CLONING (1984).
All patents, patent applications and publications cited herein, whether supra or infra, are hereby incorporated by reference in their entirety.
A. Definitions
The following terminology will be used in accordance with the definitions set out below in describing the present invention.
An "attenuated and marked" vaccine is any vaccine comprising a virus wherein the virus is modified by deletion(s) and/or point mutation(s).
A "replicon" is any genetic element (e.g., a plasmid, chromosome or virus) that functions as an autonomous unit of DNA replication in vivo; i.e., capable of replication under its own control.
A "vector" is a replicon, such as a plasmid, phage or cosmid, to which another DNA segment may be attached so as to bring about the replication of the attached segment.
A "double-stranded DNA molecule" refers to the polymeric form of deoxyribonucleotides (adenine, guanine, thymine or cytosine) in its normal, double-stranded helix. This term refers only to the primary and secondary structure of the molecule, and does not limit it to any particular tertiary forms. Thus, this term includes double-stranded DNA found, inter alia, in linear DNA molecules (e.g., restriction fragments), viruses, plasmids, and chromosomes. In discussing the structure of particular double-stranded DNA molecules, sequences may be described herein according to the normal convention of giving only the sequence in the 5' to 3' direction along the nontranscribed strand of DNA (i.e., the strand having the sequence homologous to the mRNA).
A DNA "coding sequence" is a DNA sequence which is transcribed and translated into a polypeptide in vivo when placed under the control of appropriate regulatory sequences. The boundaries of the coding sequence are determined by a start codon at the 5' (amino) terminus and a translation stop codon at the 3' (carboxy) terminus. A coding sequence can include, but is not limited to, procaryotic sequences, cDNA from eucaryotic mRNA, genomic DNA sequences from eucaryotic (e.g., mammalian) DNA, and even synthetic DNA sequences. A polyadenylation signal and transcription termination sequence will usually be located 3' to the coding sequence.
A "promoter sequence" is a DNA regulatory region capable of binding RNA polymerase in a cell and initiating transcription of a downstream (3' direction) coding sequence. For purposes of defining the present invention, the promoter sequence is bound at the 3' terminus by the translation start codon (ATG) of a coding sequence and extends upstream (5' direction) to include the minimum number of bases or elements necessary to initiate transcription at levels detectable above background. Within the promoter sequence will be found a transcription initiation site (conveniently defined by mapping with nuclease S1), as well as protein binding domains (consensus sequences) responsible for the binding of RNA polymerase. Eucaryotic promoters will often, but not always, contain "TATA" boxes and "CAT" boxes. Procaryotic promoters contain Shine-Dalgarno sequences in addition to the -10 and -35 consensus sequences.
"Strong promoter" as used herein means a control sequence that causes the efficient transcription of the coding sequence it controls. Non-limiting examples of strong promoters include endogenous promoters for such genes as tegument genes VP8 and V.sub.MW65, capsid gene VP4; glycoprotein genes such as gI, gIII and gIV; and exogenous promoters such as alpha (immediate early) and beta human cytomegalovirus promoters, bovine heat shock 70A promoter, bacteriophage T7 promoter and the like.
"Weak promoter" as used herein means a control sequence that does not cause the efficient transcription of the coding sequence it controls. Non-limiting examples of weak promoters include endogenous promoters for such genes as dUTPase, gi and gE; and exogenous promoters such as SV40 early gene promoter and Rous Sarcoma virus LTR promoter.
DNA "control sequences" refers collectively to promoter sequences, ribosome binding sites, polyadenylation signals, transcription termination sequences, upstream regulatory domains, enhancers, and the like, which collectively provide for the transcription and translation of a coding sequence in a host cell.
A coding sequence is "operably linked to" or "under the control of" control sequences in a cell when RNA polymerase will bind the promoter sequence and transcribe the coding sequence into mRNA, which is then translated into the polypeptide encoded by the coding sequence.
Two DNA or polypeptide sequences are "substantially homologous" when at least about 85% (preferably at least about 90%, and most preferably at least about 95%) of the nucleotides or amino acids match over a defined length of the molecule. DNA sequences that are substantially homologous can be identified in a Southern hybridization experiment under, for example, stringent conditions, as defined for that particular system. Defining appropriate hybridization conditions is within the skill of the art. See, e.g., Maniatis et al., supra; DNA CLONING, Vols I & II, supra; NUCLEIC ACID HYBRIDIZATION, supra.
The term "functionally equivalent" intends that the amino acid sequence of the subject protein is one that will elicit an immunological response, as defined below, equivalent to the specified BHV-1 immunogenic polypeptide.
A "heterologous" region of a DNA construct is an identifiable segment of DNA within or attached to another DNA molecule that is not found in association with the other molecule in nature. Thus, when the heterologous region encodes a viral gene, the gene will usually be flanked by DNA that does not flank the viral gene in the genome of the same source virus or virus-infected cells. Thus, heterologous includes "foreign genes" but is not limited thereto. Another example of the heterologous coding sequence is a construct where the coding sequence itself is not found in nature (e.g., synthetic sequences having codons different from the native gene). Allelic variation or naturally occurring mutational events do not give rise to a heterologous region of DNA, as used herein.
"Non-essential gene" as used herein means a gene not essential for virus growth in cell culture, for example, a gene encoding a glycoprotein such as gE, gX, gi or a gene encoding an enzyme involved in nucleic acid metabolism such as dUTPase.
"Non-essential structural gene" as used herein means a structural gene not essential for virus growth in cell culture, for example, a gene encoding a glycoprotein such as gE, gX or gi.
"Essential genes" as used herein means a gene that is essential for virus growth in cell culture, for example, genes encoding a major capsid protein such as VP4, genes encoding tegument protein such as V.sub.MW65 or VP8 or genes encoding essential glycoproteins such as gI and gIV.
"Gene regulating viral DNA metabolism" as used herein means a gene whose product is an enzyme that modifies nucleic acids. Non-limiting examples of such genes include genes encoding thymidine kinase, dUTPase and the like.
"Secretion signal sequence" as used herein means a DNA sequence which encodes the amino-terminal protein transport signal, a suitable sequence is the secretion signal sequence of the BHV-1 gIII gene.
A composition containing molecule A is "substantially free of" molecule B when at least about 75% by weight of the total of A+B in the composition is molecule A. Preferably, molecule A comprises at least about 90% by weight of the total of A+B in the composition, more preferably at least about 99% by weight.
"Bovine host" refers to cattle of any breed for which it may be desirable to immunize against BHV-1 infection, whether or not the bovine host is already infected or latently infected by BHV-1. A bovine host can be of any age. Thus, the term encompasses calves as well as adult cattle.
The term "polypeptide" is used in its broadest sense, i.e., any polymer of amino acids (dipeptide or greater) linked through peptide bonds. Thus, the term "polypeptide" includes proteins, oligopeptides, protein fragments, analogs, muteins, fusion proteins and the like. A "glycoprotein" is a glycosylated polypeptide.
"Native" proteins or polypeptides refer to proteins or polypeptides recovered from BHV-1 virus or BHV-1-infected cells. Thus, the term "native BHV-1 polypeptide" would include naturally occurring BHV-1 proteins and fragments thereof. "Non-native" polypeptides refer to polypeptides that have been produced by recombinant DNA methods or by direct synthesis. "Recombinant" polypeptides refer to polypeptides produced by recombinant DNA techniques; i.e., produced from cells transformed by an exogenous DNA construct encoding the desired polypeptide.
"Deletion of a BHV-1 non-essential gene" as used herein means deletion of a nucleotide sequence encoding a gene or a portion thereof for a BHV-1 protein which is non-essential for virus growth in cell culture.
"Mutant analog" of a BHV-1 protein or gene as used herein means a protein having an amino acid sequence or a gene having a nucleotide sequence either of which differs from the native BHV-1 protein or gene sequence by one or more additions, substitutions or deletions. The term "mutant analog" does not comprehend mutant viruses lacking an entire gene such as BHV-1 lacking the dUTPase gene encoding sequence.
"Foreign gene" as used herein means DNA of a different source than the rest of the DNA. Foreign gene as used herein thus does not include non-native materials such as mutant analogs of the same source. Suitable non-limiting examples of foreign genes include:
(A) Genes encoding the following well-characterized antigens of respiratory pathogens of cattle:
(i) Pasteurella haemolytica leukotoxin A (LktA) and leukotoxin B (LktB),
(i) Pasteurella haemolytica plasmin receptor,
(iii) bovine viral diarrhoea virus gp53, gp47 and gp25,
(iv) bovine respiratory syncytial virus glycoproteins F and G, and
(v) parainfluenza virus type 3 glycoproteins F and HN;
(vi) Hemophilus somnus LppB;
(B) Genes encoding the following antigens of enteric pathogens can also be included in the recombinant BHV-1 vectors in stimulating the common mucosal immune system:
(i) bovine coronavirus glycoproteins S and HE.
(ii) bovine rotavirus proteins VP4, VP6 and VP7;
(C) Genes encoding immunomodulatory cytokines including the following, all of which can possess adjuvant activity, particularly when delivered in a site-specific manner to a mucosal surface and will dampen replication of the vaccine vehicle:
(i) interleukin-1.alpha. (IL-1.alpha.),
(ii) interleukin-1.beta. (IL-1.beta.),
(iii)interleukin-2 (IL-2),
(iv) interleukin-4 (IL-4),
(v) granulocyte-macrophage colony stimulating factor (GM-CSF), and
(v) the interferons.
A "native gene" or "native protein" as used herein means a gene having a nucleotide sequence or a protein having an amino acid sequence which does not differ from the gene or protein sequence found in wild-type BHV-1.
An "antigen" refers to a molecule containing one or more epitopes that will stimulate a host's immune system to make a humoral and/or cellular antigen-specific response. The term is also used interchangeably with "immunogen."
By "subunit antigen" is meant an antigen entity separate and discrete from a whole virus (live or killed). Thus, an antigen contained in a cell-free extract would constitute a "subunit antigen" as would a substantially purified antigen.
A "hapten" is a molecule containing one or more epitopes that does not stimulate a host's immune system to make a humoral or cellular response unless linked to a carrier.
The term "epitope" refers to the site on an antigen or hapten to which a specific antibody molecule binds or is recognized by T cells. The term is also used interchangeably with "antigenic determinant" or "antigenic determinant site."
An "immunological response" to a composition or vaccine is the development in the host of a cellular and/or antibody-mediated immune response to the composition or vaccine of interest. Usually, such a response includes but is not limited to one or more of the following effects; the production of antibodies, B cells, helper T cells, suppressor T cells, and/or cytotoxic T cells and/or .gamma..delta. T cells, directed specifically to an antigen or antigens included in the composition or vaccine of interest.
The terms "immunogenic polypeptide" and "immunogenic amino acid sequence" refer to a polypeptide or amino acid sequence, respectively, which elicit antibodies that neutralize viral infectivity, and/or mediate antibody-complement or antibody dependent cell cytotoxicity or cell mediated immunity to provide protection of an immunized host. An "immunogenic polypeptide" as used herein, includes the full-length (or near full-length) sequence of the inserted protein or an immunogenic fragment thereof. By "immunogenic fragment" is meant a fragment of a polypeptide which includes one or more epitopes and thus elicits antibodies that neutralize viral infectivity, and/or mediates antibody-complement or antibody dependent cell cytotoxicity or cell mediated immunity to provide protection of an immunized host. Such fragments will usually be at least about 5 amino acids in length, and preferably at least about 10 to 15 amino acids in length. There is no critical upper limit to the length of the fragment, which could comprise nearly the full length of the protein sequence, or even a fusion protein comprising fragments of two or more subunit antigens.
The term "treatment" as used herein refers to either (i) the prevention of infection or reinfection (prophylaxis), or (ii) the reduction or elimination of symptoms of BHV-1 (therapy) or other diseases associated with inserted foreign genes.
B. Preferred Embodiments
Bovine herpesvirus type 1 (BHV-1) is a well-known and well-characterized virus, of which many strains are known. See, e.g., Gibbs et al. (1977) Vet. Bull. (London) 47:317-343. BHV-1, also known as infectious bovine rhinotracheitis virus, is similar in structure to other herpesviruses, and possesses a linear double-stranded DNA genome of approximately 140 kilobase pairs. BHV-1 can remain latent in infected animals, probably in trigeminal or sacral ganglia, and, as discussed above, can be reactivated with relative ease.
Accordingly, the invention includes vaccine compositions comprising mutant attenuated live-BHV-1 wherein non-essential genes are deleted and/or essential genes are mutated in order to attenuate the virus. The deleted genes are replaced with foreign genes and/or mutant analogs of genes encoding BHV-1 immunogens. In the case of a mutant BHV-1 comprising mutations of an essential gene, a foreign gene or mutant analog can be inserted at another gene location. A mutant BHV-1 gene optionally comprises endogenous BHV-1 promoters or exogenous promoters which can be used to express a foreign gene or a mutant analog gene.
The invention also includes vaccine compositions comprising a mutant attenuated live BHV-1 comprising a combination of gene deletion(s) and promoter(s) and one or more foreign genes and/or genes encoding immunomodulatory cytokines.
Multiple combinations of more than one antigen and/or cytokine gene are contemplated by the present invention. For multiple combinations, genes encoding antigens can be placed behind strong and/or late promoters while genes encoding cytokines can be placed behind weak and/or early promoters. This strategy facilitates (i) early delivery of recombinant cytokines before endogenous cytokines are elicited (by the inflammation associated with viral infection), and (ii) delivery of immunomodulatory cytokines before and/or during antigen delivery to maximize potential adjuvant-like effects (as opposed to cytokine delivery after antigen delivery).
Exemplary of suitable cytokines within the present invention are interleukin-1.alpha., interleukin-1.beta., interleukin-2, interleukin-4, granulocyte-macrophage colony stimulating factor, interferon-.gamma. and other interferons.
Promoters and non-essential genes within the present invention include the gIII gene and its promoter (Fitzpatrick et al. (1989) Virology 163:46-57), genes for gII and the glycoproteins homologous to herpes simplex virus Us5 and Us4 (Longnecker et al. (1987) Science 236:573-576 and Proc. Natl. Acad. Sci. USA 84:4303-4307; McGeoch et al. (1988) J. Gen. Virol. 69:1531-1574, Weber et al. (1986) Science 236:576-579), and promoters for gI, gIV, VP4, VP8, gH and/or immediate early genes (Petrovskis et al. (1988) Abstract of the 13th International Herpesvirus Workshop, U. Cal., Irvine and Zamb, T. J. (1987) Abstract 330, 68th Annual Meeting of the Conference of Research Workers in Animal Diseases, Chicago). Other potential genes and promoters can be used which represent other "non-essential" genes (Mettenleiter et al. (1988) J. Virol. 62:12-19, Rea et al. (1985) J. Virol. 54:21-29 and Thomsen et al. (1987) J. Virol. 61:229-232), and/or represent a range of different temporally regulated promoters (Homa et al. (1988) Vet Immnunol. Immunopathol. 17:357-365) and/or different promoter strengths (Petrovskis et al. (1988) Abstracts of the 13th International Herpesvirus Workshop, U. Cal., Irvine) which can be useful for differential regulation of the time and/or level of expression of more than one gene in the same recombinant virus.
Examples of non-essential genes suitable for deletion within the present inventions include, but are not limited to, genes encoding glycoproteins such as gX, gE and gi, and enzymes involved in nucleic acid metabolism such as dUTPase.
A BHV-1 mutant analog within the present invention can exhibit improved characteristics for purposes of the present invention. In a preferred embodiment, mutations are introduced in the gene encoding VP4 capsid protein which results in an unstable capsid protein which causes the mutant BHV-1 to be increasingly sensitive to temperature. In another preferred embodiment, mutant analogs of the V.sub.MW65 gene are produced which in turn produce a gene product defective in regulating BHV-1 gene transcription.
Exemplary foreign genes suitable for insertion into BHV-1 for the purposes of gene expression and antigen delivery to the mucosal surfaces of cattle within the present invention are genes encoding:
Bovine Viral Diarrhea Virus (BVDV):
gp53 (the major viral envelope gp);
gp47 (a minor viral gp); and
p14 (nucleocapsid);
Bovine Respiratory Syncytial Virus (BRSV):
F (fusion protein); and
G (the major viral glycoprotein);
Parainfluenza 3 Virus (PI3V):
F (fusion protein);
HN (hemagglutinin/neuraminidase); and
N (nucleocapsid);
Pasteurella Haemolytica:
LktA (leukotoxoid A);
LktB (leukotoxin B); and
plasmin receptor.
Hemophilus Somnus:
LppB (lipopolyprotein 40K)
Rotavirus (BRV):
VP6;
VP4; and
VP7
Coronavirus (BCV):
HE (hemagglutinin)
S (spike protein)
Results obtained expressing .beta.-galactosidase at various loci within BHV-1 genome indicate that recombinant virus replication efficiency is dependent on the viral gene that was disrupted and is independent of foreign gene expression itself. Thus, any genetic locus which encodes a nonessential viral protein can be a suitable foreign gene insertion site. Disruption of a nonessential gene may, however, interfere with transcription of adjacent genes if the genes are co-transcribed. Suitable insertion loci within the present invention include the gi, gX, gE and dUTPase genes.
An efficient BHV-1 vaccine vehicle must effectively express the inserted foreign gene sequences. Efficient gene expression requires the incorporation of transcriptional and translational control sequences in the foreign gene constructs.
Suitable endogenous promoters within the present invention include, but are not limited to, BHV-1 gIV gene promoter, BHV-1 gIII gene promoter, BHV-1 VP4 (nucleocapsid protein) gene promoter, VP8 (major tegument protein) gene promoter, and the V.sub.MW65 (minor tegument) gene promoter. Strong promoters that drive the highly expressed BHV-1 genes are particularly preferred. These promoters include, but are not limited to, promoters of the capsid (VP4), glycoprotein (gIII) and tegument genes (VP8 and V.sub.MW65).
Suitable exogenous promoters within the present invention include, but are not limited to, bovine heat shock 70A gene promoter, human cytomegalovirus immediately early gene promoter, and adenovirus major late promoter.
An additional set of promoters for expression of foreign genes can be constructed by creating hybrid forms of endogenous BHV-1 promoters in order to yield novel patterns of temporal regulation. Exemplary of such hybrid forms is a promoter created by the fusion of the CAAT box promoter element of the "early" gI gene with the TATA box promoter element of the "late" gIII gene to yield a hybrid promoter which drives expression at both early and late times post-infection.
A preferred vector for recombinant BHV-1 construction includes the genes encoding P. haemolytica Lkt and/or IL-2 recombined into BHV-1. Each of the genes can be inserted behind a number of different promoters to test different levels of expression of the genes and to facilitate development of combination vectors.
C. General Methods
A BHV-1 gene, for example, the gIII gene (Fitzpatrick et al. (1989) Virology 173:46-57) can be manipulated by methods disclosed by Maniatis et al. (supra) to (i) create a useful cloning site immediately behind the start codon, signal sequence, and/or the first few amino acids of the amino-terminus of the BHV-1 gene and (ii) delete the remainder of the BHV-1 gene open reading frame--but retaining the 3' untranslated segment of the BHV-1 gene. These constructions allow insertion of foreign genes behind the gIII promoter for high level "late" expression (Homa et al. (1988) Vet. Immunol. Immunopathol. 17:357-365) and/or behind the BHV-1 gene start codon or signal sequence for intracellular synthesis or secretion/membrane insertion, respectively. Constructions containing the first few amino acids of the BHV-1 gIII can exhibit elevated levels of translation, membrane insertion, stability, and/or general expression. Retaining the 3' untranslated region provides a BHV-1-specific polyadenylation signal and completely flanks the foreign gene with BHV-1-specific expression signals.
This construction can then be substituted for the BHV-1 gene in the parent plasmid pSD113 (Mayfield et al. (1983) J. Virol. 47:259-264), in order to facilitate recombination during transfections. The construction can also be subcloned into the plasmid pSD98 (Mayfield et al., supra)--in place of other putative "non-essential" genes such as gE, or BHV-1 homologues of HSV-1 Us4 or Us5 (Longnecker et al. (1987) Science 236:573-576 and Proc. Natl. Acad. Sci. USA 84:4303-4307, McGeoch et al. (1988) J. Gen. Virol. 69:1531-1574, Weber et al. (1986) Science 236:576-579). This latter plasmid may be required if deletion of a BHV-1 gene has deleterious effects on the growth of the recombinant virus in vitro or in vivo (Mettenleiter et al. (1985) J. Virol. 56:307-311; Robbins et al. (1986) J. Virol. 59:635-645). These constructions can be tested using .beta.-galactosidase, firefly luciferase, pseudorabies virus gIII and/or bovine INF-.gamma. as reporter genes.
Recombinant forms of BHV-1 are obtained by co-transfection of the above constructions with BHV-1 DNA into MDBK cells. Recombinants can be identified via the "blue plaque," "black plaque," and/or "white plaque" methods and can be selected using antisera directed against the gene of interest, for example, gIII deletion constructions are detected with anti-gIII antisera, i.e., white plaque method. To detect viruses with other deletions, the selectable marker systems noted above can be used.
Expression of reporter genes can be further evaluated in vitro by the plaque methods discussed above, polyacrylamide gel electrophoresis, immunoprecipitation, Western blotting and/or colorimetric/indirect immunological measurement of enzyme/cytokine activity using both infected cell lysates and supernatant fluids.
Replication of recombinant viruses in vitro can be monitored by one-step growth kinetic experiments. Stability of recombinants can be tested by extensive low multiplicity-of-infection passaging on MDBK cells.
Methods for the preparation and evaluation of mutant genes and proteins within the present invention are well known in the art. Non-limiting examples of mutagenesis techniques include (1) substitution of one or more amino acids by another, for example, substitution by an isosteric residue having a different function, e,g., substituting Asn for Asp; a residue having a different function; a residue having an identical function but a different primary, secondary or tertiary structure, e.g., Asp for Glu; helix breakers such as Pro; substitution of glycosylated amino acids for non-glycosylated amino acids and the like or vice versa; replacing Cys with another residue to delete disulfide bridge formation; and (2) addition or deletion of one or more amino acids to produce isosteric, functional or structural differences in the proteins. Primary structure changes include hydrophobicity or hydrophilicity modifications, secondary structure changes include local folding alterations and tertiary structure changes include changes in the 3-D structure of a protein.
Deletion mutants include deletion of at least one amino acid. Deletions can start at any amino acid in the molecule. Two or more consecutive amino acids can be deleted. Alternatively, at least one amino acid can be deleted in two or more separate locations of the molecule. Usually, a single amino acid is deleted at a particular position. The expressed deletion mutant proteins can be antigenic or non-antigenic depending on the position of the deletion and each kind can be useful for vaccines or diagnostics as discussed hereinafter. In a preferred embodiment, deletion mutations of homologous (BHV-1) structural immunogens such as gIV are provided. In another preferred embodiment, larger deletion mutations in, for example, the transmembrane anchor are provided.
One embodiment is directed to the replacement of one or more cysteine residues by another non-sulfur containing amino acid while another is directed to mutations of the N-terminus, C-terminus or an internal region.
Specific mutations can be introduced in the DNA. Site-specific deletion mutation is one preferred means of preparing deletion mutants of the invention but other known techniques can be used. The mutants can be tested for their antigenic activity in Western blotting experiments using monoclonal antibodies raised against native BHV-1 proteins.
The tegument gene, which is critical in controlling the transcriptional cascade of herpesvirus genes, can be modified via point mutation. In addition to being a major structural component of herpesviruses, tegument, in association with host cell factor(s), initiates virus transcription events leading to productive infection. Thus, by judicious site directed mutagenesis of the tegument gene, virus gene regulation can be altered such that in vivo replication of BHV-1 is less efficient. A map of the BHV-1 V.sub.MW65 gene homolog is shown in FIG. 1. The DNA sequence of the BHV-1 V.sub.MW65 gene homolog is shown in FIG. 2. Specific nucleotides within the BHV-1 tegument coding sequence (or in the gene regulation sequences) can be altered in vitro and then introduced into the wild-type virus by the co-transfection methods described herein. A foreign gene can be carried at an alternate site, e.g., the gX gene locus in this attenuated virus.
Another mechanism for virus attenuation is mutating viral genes involved in DNA metabolism such as the alpha-herpesvirus thymidine kinase (TK) gene which encodes an important virulence factor involved in DNA metabolism. The TK gene is deleted in a commercially available live pseudorabies virus vaccine. Similarly, the dUTPase gene has been shown to encode an HSV-1 virulence factor (Pyles et al. (1992) J. Virol. 66:6706-6713). The dUTPase gene product converts dUTP into dUMP thereby making it inaccessible for incorporation into new viral genomes replicated in infected cells.
In order to evaluate this gene and its role in virulence, the position of the BHV-1 dUTPase gene was mapped, using polymerase chain reaction technology and degenerate oligonucleotide primers based upon two highly conserved domains within the dUTPase family of genes (McGeoch (1990) Nuc. Acids Res. 18:4105-4110). The results of the subcloning and sequencing of the BHV-1 dUTPase gene are shown in FIG. 5. Based upon this information, the coding sequence of this gene can be deleted in the BHV-1 genome. This can be accomplished by making an insertion plasmid carrying the non-coding sequences immediately 5' and 3' to the dUTPase gene without the intervening coding sequences. Co-transfecting cells with this plasmid and wild-type BHV-1 (Cooper) DNA allows for homologous recombination between the plasmid and the viral genome, mediated by the BHV-1 sequences on the plasmid that normally flank the dUTPase gene. Recombinant viruses lacking the dUTPase gene coding sequence can be generated by these recombination events. The relative virulence of this gene-deleted virus can be tested in cattle challenge trials. Functional foreign gene sequences encoding a relevant protective immunogen(s) can be inserted at either the dUTPase locus, or at one of the minor glycoprotein gene loci. Foreign gene sequences can be inserted at the gX, gE and gi gene loci as determined by experiments wherein the gIII gene promoter/lac Z reporter gene cassette was successfully inserted at the gIII and gX loci.
The gIII gene promoter can be used to drive the expression of the E. coli lac Z gene, not only at the gIII locus, but also, at other loci throughout the genome. In addition, recombinant virus which express .beta.-galactosidase, under control of the gIII gene promoter, can effectively induce serum antibody responses to .beta.-galactosidase in recombinant virus-infected cattle. These results demonstrate that gIII promoter activity is preserved when it is relocated to different positions within the BHV-1 genome and that the gIII promoter has the strength needed to drive foreign gene expression to a sufficient level to elicit host immune responses to the foreign antigen. The level of foreign antigen expression by a viral vector required to elicit a host immune response depends, however, on the replication efficiency of the viral vector itself. For example, a low level of foreign gene expression by a relatively virulent viral vector can be sufficient to stimulate the host immune response, whereas, in order to achieve the same degree of immune stimulation, expression of significantly higher amount of foreign antigen may be required with a severely attenuated viral vector.
In addition to using promoters isolated directly from the BHV-1 genome to drive the expression of foreign genes, other strong promoters from heterologous systems can be used which include: alpha (immediate early) and beta 2.7 gene promoters from human cytomegalovirus (Spaete and Mocarski (1985) J. Virology, 56:135; the heat-shock promoter recently isolated from bovine cells (Kowalski, J. et al. Vaccines, in press), or; the T7 promoter system which requires the expression of the T7 polymerase gene to drive the expression of a foreign gene cloned downstream from and under the control of a T7 polymerase sensitive promoter (Elroy-Stein and Moss (1990) Proc. Natl. Acad. Sci. USA, 87:6743-6747).
Proper foreign gene expression requires the efficient termination of transcription. The sequence of the gI gene was described in U.S. Pat. No. 5,151,267. Included in this sequence is a 3' untranslated region (UTR), containing a distinct polyadenylation signal and a poly A addition site. This sequence, when cloned downstream of a foreign gene, provides a signal for efficient transcription termination. Synthetic oligonucleotides which mimic the untranslated sequences 3' of the gI gene can be made and used in the foreign gene insertion plasmids, such that they reside immediately downstream from the foreign gene insertion site. Termination codons can be included in all three possible reading frames immediately in front of the gI gene's UTR to ensure efficient translation termination of the foreign gene product.
Inspection of the highly expressed BHV-1 genes shows that their structure is consistent with the Kozak rules, in that the initiation codon of the highly expressed genes are surrounded by GC rich sequences (Kozak (1978) Cell 15:1109-1123. These sequences cause high affinity binding of gene transcripts to ribosome complexes. For example, the gIII, VP4 and VP8 gene initiation codons are contained within Nco I sites, i.e., CCATGG. When using any of the strong promoters to cause foreign gene expression by BHV-1, the Nco I site at the initiation codon can be conserved by correcting any of the potential foreign gene inserts such that their initiation codons are also contained within an Nco I restriction endonuclease site. The procedures which can be used for sequence alteration include: PCR cloning; site directed mutagenesis, or; gene reconstruction using synthetic oligonucleotides. Site corrections of this type allow for the rapid insertion of foreign genes into the BHV-1 insertion vectors, and ensure that gene inserts conform to the Kozak rules for preferred nucleotides at the site of translation initiation.
Since many of the genes encode glycoproteins, it is useful to pay attention to the efficiency by which these proteins can be transported (Lawrence et al. (1990) XV International Herpesvirus Workshop Abstract) to the surfaces of and, in special cases secreted from, cells infected with the relevant BHV-1 cloning vehicle.
U.S. Pat. No. 5,151,267, which is hereby incorporated by reference, describes the DNA sequence of the BHV-1 gIII gene, including those sequences which encode the amino-terminal protein transport signal. The protein product encoded by this gene is expressed in high levels and efficiently transported. The signal sequences of foreign glycoprotein genes destined for BHV-1 insertion can be replaced with the sequences encoding the gIII gene signal. Efficient post-translational processing and protein transport mediated, in part, by these sequences can improve the efficiency of production and the immunogenicity of the foreign glycoprotein produced by the BHV-1 vector. The translation efficiency of the foreign gene can be increased, as well, by using the gIII gene's signal. The rate of translation from the foreign gene transcripts improves since translation can commence with the gIII signal sequence which is encoded by triplets commonly used in highly expressed herpesvirus genes. Codon bias plays a significant role in levels of translation, in that highly expressed genes use a subset of the known codons (Grantham et al. (1981) Nucl. Acids Res. 9:r43-r74. In addition, codon bias can become important when considering foreign gene expression mediated by herpesviruses, since many of these viruses have a very high GC content, approaching 80% for most genes. Thus, the preferred codons used by BHV-1 are GC-rich as well, while most of the genes selected for expression by this virus have more average GC content. In other systems the translation efficiency of the entire transcript can be greatly increased by modifying the codons at the amino terminus of a gene, such that they conform to the codon bias used by the highly expressed genes of that system.
Causing the secretion of a typically membrane associated glycoprotein increases the yield of that protein. For example, the amount of secreted gIV (the anchor sequence.sup.- construct) produced by a particular pox virus expression system is 100-fold higher than the amount of membrane associated gIV (anchor sequence.sup.+) made by the same promoter system. A similar, but less dramatic, difference was observed when the same constructs were expressed by recombinant adenoviruses. The BVDV gp53 gene construct, with and without its anchor sequence, can be produced by fusion to the gIII gene promoter and the resulting constructs inserted at the BHV-1 gX gene locus. The level of recombinant gp53 produced by each construct can be evaluated in vitro. Both BHV-1 recombinants can be tested for the degree of protection they confer to cattle from virulent BVDV challenge. The immune responses elicited to gp53 by the two constructs can be closely compared and the probable differences in the absolute amounts of gp53 produced determined. The relative intensity of the immune response, and the differences in the type of the response elicited by the two versions of gp53 can also be determined. For example, the membrane associated protein may produce a more efficient CMI response, while the secreted form of the same molecule may produce a better antibody response.
Herpesvirus gene expression is strictly and temporally regulated. Directly after entering cells of the permissive host, the immediate-early (IE) genes of the virus are transcribed. The protein products of these genes then coordinate the transcription of the subsequent temporal classes of genes, responsible for either initiating or terminating their transcription in a coordinated fashion. Expression of the IE genes is directly followed by early gene expression, viral DNA replication and then late gene expression. Therefore, virus encoded factors which regulate the virus gene expression cascade must be critical to the normal virus replication process and, therefore, must represent important virulence factors in virus pathogenesis. Among these factors, VP16 (the V.sub.MW65 gene product, or .alpha.-trans-inducing factor) of HSV has been best characterized. This viral protein serves at least two functions: (a) it is the major structural component of the virus tegument; and (b) it is a critical transactivating factor required for IE gene expression. While HSV-1 VP16 is an essential virus protein, mutations are tolerated at the region of the V.sub.MW65 gene which is responsible for encoding the transactivation functions. Virus mutants lacking VP16 transactivating activity must be added in high concentrations in order to produce productive infections in cell culture, indicating that these mutants are highly attenuated. Thus, producing mutations which alter transcriptional transactivation functions of VP16, while not significantly altering the overall structure of this protein, can provide an additional means of attenuating the virus.
Recombinant vaccinia virus expressing interleukin 2 (IL-2) is significantly less virulent in immune compromised mice, when compared with wild-type vaccinia virus. This is partly due to induction of local gamma-interferon production caused by the IL-2 expressed by the recombinant virus. In addition, recombinant vaccinia virus expressing tumour necrosis factor (TNF) .alpha. was found to be rapidly and efficiently cleared from normal mice, and significantly attenuated in immunodeficient mice. This appears to be due to the direct antiviral effect of TNF, rather than a local enhancement of cellular or humoral immune responses.
Another strategy for attenuating BHV-1 involves the expression of relevant bovine cytokine genes by recombinant BHV-1. Such a recombinant BHV-1 may also provide a means of preventing latent virus infection by a BHV-1 vaccine vehicle. The lack of MHC antigen expression on the surfaces of virus infected cells [either as an inherent property of the cells themselves, such as neurons, or due to an interference of MHC antigen presentation caused by a viral gene product] prevents the destruction of virus infected cells by cytotoxic T cells and, as a result, may lead to establishment of persistent or latent viral infections. Cytokines, such as gamma-interferon, are well documented for their ability to stimulate MHC molecule expression. Therefore, a recombinant virus that expresses these cytokine(s) can boost expression of MHC antigen by the infected cells, which can reduce, and perhaps block, latent infections. This is of particular interest, since no herpesvirus mutants have thus far been identified which are unable to establish latency. Thus, attenuation of the BHV-1 vaccine vehicle can be achieved by providing constructs which will express bovine cytokines which comprise, for example, mutations of the BHV-1 V.sub.MW65 gene homolog and bovine cytokine genes such as IL-1.alpha., IL-1.beta., IL-2 or gamma-IFN.
The production of a truly efficacious vaccine delivery system requires careful consideration of: (a) the appropriate promoter used to drive the expression of the foreign gene; (b) the sites within the genome of the vehicle which will allow foreign gene insertion and expression; and (c) judicious selection of relevant genes encoding protective immunogens.
The vaccines are formulated into a vaccine composition comprising a pharmaceutically acceptable vehicle and, optionally, an adjuvant. Such formulations are well within the skill of the art. In general, the formulations will be particularly adapted for intramuscular injection, since intravenous injection is usually not practical for large-scale application to domestic animals. Alternatively, the vaccines are given orally or intranasally, and the subunits formulated with a suitable oral carrier. It may be preferred to administer the vaccines of the present invention orally to raise mucosal immunity, as well as intramuscularly for systemic immunity. A pharmaceutically acceptable vehicle, suitable for parenteral injection, is usually nontoxic and nontherapeutic. Examples of such vehicles are water, saline, Ringer's solution, dextrose solution, and Hank's solution. Nonaqueous vehicles, such as fixed oils, sesame oil, ethyl oleate, or triglycerides may also be used. Parenteral vehicles may also take the form of suspensions containing viscosity enhancing agents, such as sodium carboxymethylcellulose, sorbitol, or dextran. The vehicle will also usually contain minor amounts of additives, such as substances that enhance isotonicity and chemical stability. Examples of buffers include phosphate buffer, bicarbonate buffer and tris buffer, while examples of preservatives include thimerosal, m- or o-cresol, formalin and benzyl alcohol. Standard formulations will either be liquid injectables or solids which can be taken up in a suitable liquid as a suspension or solution for injection. Thus, in a nonliquid formulation, the vehicle may comprise dextrose, human serum albumin, preservatives, etc., to which sterile water or saline could be added prior to administration.
Various adjuvants are known in the art which can also be employed in the vaccine formulations of the present invention; e.g., Freund's adjuvant, Avridine, aluminum salts [Al(OH).sub.3, AlPO.sub.4, Al.sub.2 (SO.sub.4).sub.8 ], Ca.sub.3 (PO.sub.4).sub.2, saponin, DDA, Pluronics, oil-in-water emulsions (containing, e.g., Avridine, dextran sulphate, Emulsigen PLUS or vitamin E) and water-in-oil emulsions (containing, e.g., polysorbate 80). The selection of the appropriate adjuvant and its concentration in the vaccine composition is within the skill of the art.
Many protocols for administering the vaccine composition of the present invention to animals are within the skill of the art. The preferred route of administration is intranasally or parenterally, particularly intramuscularly. The concentration of the antigen(s) in the vaccine composition is selected so that an effective dose is presented in the bovine host to elicit cell mediated immunity or antibodies to the polypeptide neutralizing epitopes. Within wide limits, the dosage is not believed to be critical. Typically, the vaccine composition is administered in a manner which will deliver between about 10.sup.5 to about 10.sup.8 plaque forming units (PFU) in a convenient volume of vehicle (e.g., about 1-10 ml). Preferably, the dosage in a single immunization will deliver from about 10.sup.6 to about 10.sup.7 PFU of antigen. It may also be preferred, although optional, to administer a second, booster immunization to the animal several weeks to several months after the initial immunization. To insure sustained high levels of protection against disease, it may be helpful to readminister a booster immunization to the animals on a periodic basis.
Diagnostic Assays for BHV-1 Antibodies
The recombinant antigens of BHV-1 tegument, capsid and (glyco)proteins such as VP4, VP8, V.sub.MW65, gi, gX and/or gE can be used as substrate reagents in immunoassays to identify antibodies to these BHV-1 proteins in a sample, e.g., blood, from a bovine host as one means of determining if the bovine host is infected with BHV-1 and to determine the concentration of the antibodies in the sample. Immunoassays employing recombinant antigens of BHV-1 proteins within the present invention include, but are not limited to, radioimmunoassay, competition immunoassay, immunoprecipitation, enzyme-linked immunoadsorbent assay, immunofluorescence assay and the like. Detection is convenient, rapid, sensitive and specific. The recombinant antigens of BHV-1 proteins are used in assay compositions in a concentration sufficient to form a detectable complex with the antibodies. BHV-1 antigens can be mixed with or bound to a suitable matrix (support) or carrier, such as a latex particle, plastic microtitration plate or the like. They can also be conjugated with an enzyme, dye, radioisotope or the like, depending upon what immunological method is used. The details of conducting various types of immunoassays is well known in the art and also described in Tyssen, P., LABORATORY TECHNIQUES IN BIOCHEMISTRY AND MOLECULAR BIOLOGY, PRACTICE AND THEORY OF ENZYME IMMUNOASSAYS (eds. R. H. Burton and P. H. van Knippenberg), the disclosures of which are incorporated by reference.
Accordingly, the invention includes a method for determining the absence or presence and/or concentration of antibodies directed against BHV-1 in a sample by employing an immunoassay, the immunoassay characterized by using recombinant antigenic BHV-1 proteins reactive with BHV-1 antibodies as a reagent in the immunoassay, whereby a complex of the BHV-1 antibodies and the recombinant antigenic BHV-1 protein is formed, and determining the absence or presence and/or concentration of such a complex to determine if antibodies directed against such recombinant protein are present in a sample and, if present, to provide a means of determining their concentration.
Analysis of samples from animals can be used to determine if the animal is protected by the vaccine of the invention and has not been exposed to a wild-type BHV-1 strain. Such a vaccinated animal will only have antibodies to the non-deleted genes and will not have antibodies directed against the deleted gene(s).
Described below are examples of the present invention which are provided only for illustrative purposes. The examples are not intended to limit the scope of the present invention in any way, as numerous embodiments within the scope of the claims will be apparent to those of ordinary skill in the art in light of the present disclosure. Those of ordinary skill in the art are presumed to be familiar with (or to have ready access to) the references cited in the application, and the disclosures thereof are incorporated by reference herein.
C. Experimental
EXAMPLES
Example 1
Use of Recombinant BHV-1 Proteins for Diagnostic Purposes
Recombinant BHV-1 gi, gE, gX, V.sub.MW65, VP4 and VP8 within the present invention are used as antigens in standard immunological assays, ELISA tests, to indicate the presence of antibodies to BHV-1. In this manner, the immunological status of an animal was assessed with respect to present infection or predisposition to BHV-1.
Recombinant gi, gE, gX, V.sub.MW65, VP4 and VP8 proteins are diluted in sodium carbonate buffer pH 9.6 and used to coat the wells of an ELISA microtitration plate at concentrations ranging from 0.1 to 1 .mu.g of protein/well. After incubating for a minimum of 1 hour, the plates are washed and dilutions of animal sera are added to the wells in a serial fashion. Processing of the ELISA assay proceeds essentially as described in U.S. Pat. No. 5,151,267 which is incorporated by reference herein in its entirety. Affinity-purified HRPO conjugated anti-bovine IgG was used at a dilution of 1:3000 for detection.
The developed ELISA assay indicated that animals infected by BHV-1 had detectable levels of antisera specific for gI, gi, gE, gX, gIV, dUTPase, V.sub.MW65, VP4 or VP8 and any one of these recombinant BHV-1 proteins would be suitable for use in the diagnosis of BHV-1 infection.
Example 2
Isolation of the BHV-1 Homolog of the HSV Tegument Gene V.sub.MW65 (UL48)
The BHV-1 V.sub.MW65 gene homolog of the HSV V.sub.MW65 gene was identified by Southern hybridization analyses of the cloned BHV-1 genome using the HSV-1 V.sub.MW65 (UL48) gene coding sequence as a probe. FIG. 1 is a representation of the BHV-1 genome (Cooper strain) in which the HindIII restriction endonuclease sites are represented as vertical lines. Each of the HindIII fragments (less the terminal fragments) were cloned into the HindIII site of pBR322. The plasmids representing the BHV-1 genomic clone bank were digested with HindIII and run on a 1% agarose gel. The separated DNA fragments were transferred to nitrocellulose, which was probed with a cloned fragment of the HSV-1 genome containing the UL48 gene coding sequence. The HSV DNA probe was labeled with .sup.32 P by nick-translation. The first probe used was a 1217 bp SalI fragment containing the bulk of the HSV V.sub.MW65 (UL48) gene coding sequence isolated from the plasmid pMC1 (see Dalrymple et al. (1985) Nucl. Acid Res. 13:7865). When used as a probe, it hybridized specifically to the BHV-1 HindIII J fragment represented in the subclone pSD57.
In order to more precisely define the position of the BHV-1 V.sub.MW65 gene homolog within this 9 kilobase pair HindIII fragment, a detailed restriction endonuclease map of pSD57 was constructed. pSD57 was then digested with an array of restriction endonucleases known to cut within the BHV-1 insert. The fragments were separated on duplicate agarose gels, which were then blotted with nitrocellulose. The transfers were probed individually with amino- or carboxy-terminal specific probes from the HSV-1 V.sub.MW65 gene (the probes were generated by SalI plus MaeI digestion of pMC1, followed by relevant fragment isolation). Results from these experiments positioned the BHV-1 V.sub.MW65 tegument gene at the extreme right-hand end of the HindIII J fragment (see FIG. 1). The orientation of the gene was determined using end-specific probes. The gene is transcribed left to right (i.e., towards the center of the BHV-1 genome). In addition, the differential probe hybridization suggested that the tegument gene extends into the adjacent HindIII fragment, HindIII M, present in clone PSD62. From this information subclones were made (from pSD57 and pSD62) of the suspected gene coding region for DNA sequence analyses (see FIG. 1).
DNA sequencing has demonstrated significant predicted amino acid homology between HSV V.sub.MW65 (UL48) and a large open reading frame in the relevant subclones from pSD57 and pSD62 (FIG. 1). This clearly demonstrates that the BHV-1 V.sub.MW65 gene homolog has been identified. The BHV-1 V.sub.MW65 tegument gene is expressed in gene expression systems (e.g., vaccinia, adenovirus or baculovirus) and the recombinant product tested for immunogenicity in animals.
Example 3
In Vitro Characterization of BHV-1 V.sub.MW65 Homolog
The BHV-1 V.sub.MW65 gene homolog, VP16, is expressed in high levels by mammalian cells in culture using a vaccinia virus foreign gene expression system. (Elroy-Stein and Moss (1990) Proc. Natl. Acad. Sci. USA, 87:6743-6747). To insure authenticity of the cloned BHV-1 V.sub.MW65 gene homolog product, VP16, monospecific polyclonal antisera against BHV-1 VP16 is made by immunizing rabbits with the recombinant form of the protein made by the vaccinia system. This serum is used in ELISA, immunoprecipitation and/or Western blot analyses of BHV-1 infected cells. These assays establish if antibody to recombinant VP16 specifically binds authentic VP16 produced by BHV-1 infected cells.
In order to determine if BHV-1 VP16 has transactivating activity, the BHV-1 V.sub.MW65 gene homolog is cloned into a eukaryotic cell expression vector, for example, a vector containing the constitutive SV40 late antigen promoter. This vector is used to co-transfect MDBK cells with naked BHV-1 genomic DNA. VP16 transactivating activity allows efficient production of a large number of virus plaques resulting from genomic DNA transfection in the presence of the V.sub.MW65 homolog expression vector compared to the production of very few plaques when cells are transfected with BHV-1 DNA alone. This result is expected, since the VP16 protein is required for the efficient initiation of the viral transcriptional cascade which cannot be provided by the naked viral genomic DNA.
Alternatively, the promoter sequence of the BHV-1 IE gene is isolated. A vector containing the IE promoter is constructed which regulates the expression of a reporter gene such as E. coli lac Z or chloramphenicol acetyltransferase (CAT). Co-transfection of MDBK cells with the IE promoter/reporter gene vector and BHV-1 VP16 expression vector is carried out. The trans-activating activity of BHV-1 VP16 is determined by the extent of reporter gene expression.
Example 4
Construction of BHV-1 gIII Gene Deletions and Insertions
A functional virus was produced when the glycoprotein gIII gene coding sequence was deleted from BHV-1 according to the methodology described in Liang et al. (1991) J. Virology 65:1124-1132. See also Kit et al. (1991) Vaccine 9:564-572). Making deletions in this class of genes (i.e., those encoding the viral glycoproteins) was intended to limit the replication efficiency of the virus such that it was rendered safe for administration to cattle as a live vaccine. Surface exposed viral glycoproteins are responsible, either directly or indirectly, for permissive host cell recognition and virus entry, including attachment and penetration. Thus, genetically altering these important virulence factors affects the ability of the virus to replicate in the natural host.
The gIII gene-deleted BHV-1 mutant exhibited a characteristically altered phenotype in vitro. When compared to parental wild-type virus, the mutant exhibited a delay in replication, reduced shedding of virus from infected cells and a reduced efficiency of virus egress but was not sufficiently attenuated to be used as a vaccine.
Example 5
Deletions of Minor Glycoprotein Genes
In addition to generating the gIII gene deletion, partial gene deletions were made in the BHV-1 gi and gX gene homologs. This was accomplished by first mapping the positions of the BHV-1 genes encoding the minor glycoproteins (gX and gi), using the HSV and PRV homologous genes as probes of the BHV-1 genome in Southern blot analyses.
This same procedure was used to map the position of the major glycoprotein genes, namely gI (gB), gIII (gC) and gIV (gD). Using both the HSV and PRV gene homologs, the position of the corresponding BHV-1 genes were found. Mapping experiments showed that the gD gene coding sequence, located within the U.sub.s region (specifically in the HindIII K fragment), is flanked by the gX and gi genes, while the gE gene is distal to the gi gene, its 3' end most probably extending into the HindIII C fragment.
The map position and orientation of all the genes in FIG. 1 shows colinearity between the related herpesviruses [i.e., including BHV-1, HSV-1 and 2, PRV, feline herpesvirus 1 (FHV 1), Marek's disease virus and equine herpesvirus 1 (EHV 1)]. The map positions of the minor glycoprotein genes gE, gX and gi were disclosed by Tim Zamb at the International Bovine Herpesvirus Meeting (1988) and are consistent with the map produced by Wirth et al., Proceedings of the International Herpesvirus Meeting (1991). The HindIII clones described are equivalent to those produced by Mayfield et al. (1983) J. Virology, 47:259-264.
A detailed restriction endonuclease map of the BHV-1 HindIII K genomic fragment was generated as shown in FIG. 1. The minor glycoprotein genes, which were targets for deletion, mapped to this fragment. As seen in FIG. 1, a 300 bp Xho I fragment was mapped to the approximate middle of the coding sequence of the gX gene. An insertion vector was constructed in which the 300 bp Xho I subfragment from the HindIII K fragment was replaced by a lac Z expression cassette. This expression cassette consisted of the BHV-1 gIII gene promoter (pgIII) followed by the coding sequence of the lac Z gene which, in turn, was followed by the SV40 polyadenylation signal. The lac Z coding sequence begins with the nucleotides encoding the 10th amino acid of beta-galactosidase. Recombinant BHV-1 with the pgIII:lac Z cassette inserted into the gX gene coding sequence was generated by co-transfecting MDBK cells with the above insertion plasmid and wild-type BHV-1 genomic DNA according to the methodology of Liang et al. (1991) J. Virology, 65:1124-1132 and 5553-5557. Recombinant viruses were selected from blue plaques produced by plating viruses arising from the co-transfection on MDBK cells and overlaying with agarose supplemented with Bluogal (a BRL chromogenic substrate for beta-galactosidase). Insertion of the lac Z expression cassette was confirmed by restriction endonuclease analyses of genomic DNA from plaque purified blue viruses.
A vector for insertion of the lac Z reporter gene into the gi gene was constructed in a similar manner. A 300 bp Not I fragment was mapped to the middle of the coding sequence for the gi gene. Since there are several Not I sites in the HindIII K fragment, the 1865 bp Sma I subfragment, containing the coding sequence for the gi gene was subcloned and formed the basis of the gi gene insertion plasmid. The two Not I sites present in the gi gene coding sequence are the only ones present in the Sma I subfragment. The pgIII-lac Z-SV40 poly A cassette was inserted into the Sma I subclone, replacing the 300 bp Not I fragment. In addition to the above single mutants, double mutants were constructed to increase attenuation of the BHV-1 vaccine vector. A gIII:gX gene double mutant was obtained by co-transfecting cells with the gX gene insertion vector and genomic DNA isolated from the gIII gene deleted virus (both described above). The double mutant was confirmed by restriction endonuclease analyses of DNA isolated from blue viruses arising from this co-transfection.
In vitro characterization of the above insertion mutants again demonstrated the profound effect that gene disruption may have on proper virus function. Wild-type (Cooper) and the gene-disrupted viruses were plated on 6-well microtitration plates such that there were approximately 50 plaque forming units per well, and overlayed with 1.25% agarose supplemented with growth media and 2% fetal bovine serum. Following four days growth at 37.degree. C. and 5% CO.sub.2, the diameters of 100 plaques for each virus were measured. Plaque size was expressed as a percentage of the mean diameter of the wild-type virus (Cooper strain). gX plaque diameter was 60% of the diameter of the wild-type whereas gE plaques were 40% of the diameter of the wild-type virus plaque size. The gX mutant was produced using an insertion plasmid. There was a lesser, but measurable difference, in the gX (the homolog to PRV gX) gene mutant as well.
This phenotypic difference was also reflected in virus titers. MDBK cells were infected with virus at a multiplicity of infection of one. At regular intervals throughout the infection process, culture media was harvested, clarified by low-speed centrifugation, and virus titers were determined by plaque assay. Results showed that the wild-type Cooper strain could produce >10.sup.7 pfu/ml, while gX gene mutant produced 10.sup.7 pfu/ml.
The effect of two lesions at different genetic loci within the same virus were measured in a single step growth experiment. A gIII.sup.- : gX.sup.- : lac Z.sup.+ mutant was produced using an insertion plasmid. The double deletion mutant was produced by co-transfecting MDBK cells with naked viral genomic DNA from the gIII.sup.- mutant plus the insertion plasmid. The gIII.sup.- BHV-1 mutant is described in Liang et al. (1991) J. Virol. 65:1124-1132.
A single-step growth assay was performed for wild type BHV-1 and the gIII.sup.- : gX.sup.- : lac Z.sup.+ mutant viruses as in the preceding paragraph, except that cells rather than growth media were harvested and assayed for the production of virus. At regular intervals throughout the experiment, infected cells were harvested, washed extensively and lysed by successive freeze-thawings. Virus liberated from cells was determined by plaque assays. These results demonstrated that in vitro virus replication efficiency was more severely effected in a double mutant than in either of the corresponding single locus mutants.
The reduced replication efficiency exhibited by the BHV-1 mutants described above was caused by a decrease in (a) virus adsorption to permissive cells; (b) virus penetration following attachment; (c) virus progeny for the gIII.sup.- : gX.sup.- : LacZ.sup.+ double mutant; and (d) efficiency of virus egress from infected cells for the gIII.sup.- : gX.sup.- : LacZ.sup.+ double mutant.
In order to measure wild-type and mutant virus adsorption to permissive cells, MDBK cells in six-well plates were cooled at 4.degree. C. for one hour, and approximately 400 plaque forming units (PFUs)/well of each virus were added and then incubated at 4.degree. C. Viral inoculum was removed from individual wells at 0, 36, 72 , 108, 144 and 180 minutes; the cells were then washed and overlaid with agarose. Plaques were counted four days later. The number of plaques formed following 180-minute incubation at 4.degree. C. was defined as 100% adsorption.
To compare the penetration kinetics of wild-type BHV-1 to a gX.sup.- mutant, MDBK cells in six-well plates were cooled to 4.degree. C., inoculated with 200 PFUs of virus and incubated at 4.degree. C. for one hour. After adsorption, the inocula were removed, and the cells were returned to 37.degree. C. Cells were washed with acid at 10, 20, 30 , 40 and 50 minutes to inactivate unpenetrated virus. Once washed, the cells were overlaid with agarose. The number of viral plaques was counted four days later. The number of plaques formed without acid treatment was designated 100% penetration for purposes of calculating percentages. Analysis of viral penetration by wild-type BHV-1 versus gX.sup.- penetration indicated wild type to have approximately 88% penetration and gX.sup.- approximately 66% penetration after 50 minutes incubation.
The degree of attenuation of each of the described mutant viruses was determined by the methodology of Liang et al. (1992) Virology 189:629-639. Briefly, following intranasal administration of the mutant and wild-type viruses, clinical disease symptoms, virus lesions in the upper respiratory tract, virus shed in nasal secretions, BHV-1 antibody titers both to the deleted antigen and to reference BHV-1 antigens, virus neutralization titers in serum, and resistance to a superinfecting virulent challenge virus strain (strain 108) were evaluated. The results indicated that the level of immunity induced was directly related to the degree of attenuation. With the least attenuated mutant (gIII.sup.-), some virus shedding and clinical symptoms were observed with subsequent high-level immunity and complete protection from challenge. By way of contrast, the most attenuated mutant (gX.sup.-) only provides putative protection.
Example 6
Construction of a Recombinant BHV-1 Virus Lacking the dUTPase Gene
Wild-type BHV-1 was propagated in MDBK cells grown in minimum essential medium (MEM, GIBCO/BRL Laboratories, Grand Island, N.Y.) supplemented with 10% fetal bovine serum (FBS, GIBCO/BRL). Degenerate oligonucleotides used as PCR primers were produced as shown in FIG. 4A. Purified BHV-1 genomic DNA and a plasmid, pSD57, which contains the HindIII J fragment of the BHV-1 genome were used as templates. Prior to the standard PCR procedure, template DNA was prepared manually with one cycle of a primer extension reaction using T7 polymerase and c7-deaz-GTP to replace dGTP. This reaction was carried out using a Pharmacia T.sup.7 Sequencing Kit (Pharmacia, Baie d'Urfe, Quebec Canada) according to instructions, except that the chain elongation reaction was performed at 37.degree. C. for 5 minutes. The 5' primer-and 3' primer-based extension reactions were performed sequentially. For the subsequent PCR procedure, each reaction mixture consisted of: 100 ng of the T7 polymerase treated template DNA; 50 pmol of each primer; 200 .mu.mol each of DATP, dGTP, dCTP and dTTP, and; units of Pyrococus furiosus (pfu) DNA polymerase (Stratagene, La Jolla, Calif.) in pfu DNA polymerase buffer 1 (Stratagene). The reaction was initiated with a denaturation step at 98.degree. C. for 4 min, followed by 40 cycles of 55.degree. C. for 30 seconds (annealment) -78.degree. C. for 90 seconds (polymerization) -98.degree. C. for 30 seconds (denaturation). Following amplification, the PCR product was digested with EcoRI and HindIII and run on a 1% agarose gel. Following electrophoresis, the appropriate band was isolated and cloned into the EcoRI and HindIII sites of Bluescript II KS.sup.+ (Stratagene).
Generation of Recombinant Virus
The transfer vector used for generation of the recombinant virus was constructed as follows. First, pSD57 was digested with NcoI and treated with Mung bean exonuclease. An approximately 0.9 kilobase pair (kbp) blunt ended NcoI fragment, which contains the 5' flanking sequence of the dUTPase gene, was isolated from an agarose gel by standard procedures (Maniatis et al., 1982, supra). polylinker5'gIII (Liang et al. (1991) J., Virol. 65:1124-1132), which contains the 5' BHV-1 gIII gene flanking sequence, was digested with Sal I and SmaI (both located upstream of the gIII gene's promoter), and treated with Mung bean exonuclease to blunt the asymmetric ends. The plasmid backbone was isolated from an agarose gel and ligated to the above 0.9 kbp blunt-ended NcoI fragment. The resultant plasmid (p5'DUC) contains the 5' flanking sequence of dUTPase gene immediately upstream of the promoter from the gIII gene. To isolate the dUTPase gene's 3' flanking sequences, pSD57 was digested with DraI and PvuII and a 0.5 kbp fragment (located within the dUTPase coding sequence) was isolated and cloned into the EcoRV site of Bluescript II KS.sup.+. The same 0.5 kbp fragment was excised from the Bluescript vector by EcoRI and HindIII digestion and then inserted into the EcoRI and HindIII sites (both located immediately 3' to the coding sequence of the gIII gene) of p5'DUC, resulting in pDUC. The E. coli lacZ gene was isolated from pgIII/LacZ (Liang et al. (1992) Virology 189:629-639) by NcoI and HindIII digestion and inserted into the NcoI and HindIII sites of pDUC. The resultant plasmid, pDUC/Z, was used as the transfer vector.
To generate recombinant virus, MDBK cells were cotransfected with 10 .mu.g of pDUC/Z (linearized via AseI digestion) and 10 .mu.g of purified BHV-1 genomic DNA using a Bio-Rad gene pulser at 500 .mu.F and 200 V as previously described (Liang et al. (1991) J. Virol. 65:1124-1132). The resultant progeny virus was screened for .beta.-galactosidase production by a blue plaque assay.
Blue Plaque Assay
Two types of blue plaque assays were performed. For the initial screening of recombinant virus, the chromogenic substrate, Bluo-gal, was incorporated into agarose overlays of virus infected monolayers (Liang et al., (1992) Virology 189:629-639). To assess the purity of the stock of the recombinant viruses isolated in this way, a more sensitive X-gal-based histochemical assay (MacGregor et al. (1987) Som. Cell and Mol. Gen. 13:253-265) was employed. In this assay, MDBK cell monolayers containing well separated viral plaques were fixed with 2% paraformaldehyde and 0.2% glutaraldehyde at 4.degree. C. for 5 min, followed by three washes with PBS. The substrate, composed of 1 mg/ml of X-gal in 100 mM sodium phosphate (pH 7.3), 1.3 mM MgCl.sub.2, 3 mM K.sub.3 Fe(CN).sub.6 3 mM K.sub.4 Fe(CN).sub.6 was added and the monolayers were incubated at 37.degree. C. to permit color development. dUTPase assay.
The dUTPase assay was performed according to Wohlrab et al. (1982) J. Virol. 43:935-942. Approximately 2.times.10.sup.7 MDBK cells were infected with each virus at a multiplicity of infection (MOI) of 1. Twenty hours after infection, cytoplasmic and nuclear fractions were collected separately, and suspended in 1 ml and 0.3 ml of the hypotonic solution [20 mM 4-(2-hydroxethyl)-1piperazine ethanesulfonic acid buffer (pH 7.8)-1 mM dithiothreitol-1 mM MgCl.sub.2 ] containing 80 mM potassium acetate], respectively. For each enzyme reaction, 45 .mu.l of cell extract was added to 5 .mu.l of a stock solution containing 100 mM MgCl.sub.2, 10 mM dithiothreitol, 10 mM ethylene glycol-bis (.beta.-aminoethyl ether)-N,N,',N',-tetraacetic acid (EGTA), 20 mM ATP and 0.5 mM [3H]-dUTP (2 Ci/mmol; Amersham, Oakville, Ontario, Canada). The reaction was carried out at 4.degree. C. and terminated by addition of 20 .mu.l of 100 mM EDTA and 105 .mu.l of methanol. [3H]-dUMP, produced from the reaction, was separated from [3H]-dUTP by thin layer chromatography on UV-sensitive polyethyleneimine (PEI)-cellulose plates. The production of [3H]-dUMP was determined by scintillation counting of the corresponding spots excised from the PEI-cellulose plates.
Other Methods
Restriction endonuclease mapping and Southern blot analysis were carried out by standard procedures (Maniatis et al., 1982, supra). Sequence determination was performed according to the double-stranded DNA sequencing protocol provided with the Pharmacia T7 Sequencing Kit, substituting dGTP with c7-deaz-GTP. Both strands of DNA were sequenced at least once. Amino acid sequence homology comparisons were analyzed using the CLUSTAL Program (Higgins and Sharp (1988) Gene 73:237-244). Identification of the BHV-1 dUTPase Gene by PCR.
The initial approach, which involved probing a plasmid library of the BHV-1 genome (Mayfield et al. (1983) J. Virol. 47:259-264) with the HSV-1 dUTPase coding sequence [contained within plasmid pGX63 (Preston and Fisher (1984) Virol. 138:58-68)], failed to identify the BHV-1 dUTPase gene. A degenerate primer-based PCR procedure was then pursued. The aim was to first amplify a dUTPase gene fragment from the BHV-1 genome, and then to use the PCR product as a probe to map the dUTPase gene.
The dUTPases of HSV-1, VZV, EBV, E. coli, yeast and mammalian cells were previously shown to share five prominent conserved amino acid motifs (McGeoch (1990) Nuc. Acid Res. 18:4105-4110; McIntosh et al. (1992) Proc. Natl. Acad. Sci. USA 89:8020-8024). Differing from the dUTPases of other organisms, herpesvirus encoded dUTPases have a rearranged order of these motifs, so that motif 3 is followed by motifs 1, 2, 4 and 5, respectively. Based on this, motifs 3 and 1 from HSV 1 and VZV were selected to derive the 5' and 3' degenerate PCR primers, respectively (FIG. 4A). In order to reduce total degeneracy, two sets of primers were synthesized based upon the sequence of motif 3 from HSV-1. All the primers consisted of 20 nucleotides based upon the conserved dUTPase motifs covalently linked at their 5' ends with an 8 nucleotide sequence containing a restriction endonuclease recognition site (EcoRI for the motif 3 primers and HindIII for the motif 1 primers). The genome of BHV-1 is arranged in an inverted orientation relative to the accepted format of depicting the HSV-1 genome (Davison and Wilkie (1983) J. Gen. Virol. 64:1927-1942). After correcting for this inversion, the positions of all BHV-1 genes thus far mapped are collinear with their HSV 1 counterparts. Accordingly, it was determined that the gene encoding dUTPase (the HSV-1 UL50 gene homolog) should map to a subregion within the HindIII J fragment of BHV-1 genome. An attempt was then made to amplify a BHV-1 dUTPase gene fragment from both viral genomic DNA and the plasmid, pSD57, which contains the HindIII J fragment. One cycle of a primer extension reaction using T7 polymerase (an enzyme with known high processivity) was carried out in the presence of c7-deaz-GTP. This was followed by the conventional PCR procedure. With this modification, a distinct PCR product of approximately 0.25 kb was obtained. A similar product with much weaker intensity was also amplified from the BHV-1 genomic DNA. The 0.25 kb fragment amplified from pSD57 was isolated and subsequently cloned into Bluescript, and its sequence was determined.
Map and Sequence of the BHV-1 dUTPase Gene
The observation that similar PCR products were amplified from both BHV-1 genomic DNA and pSD57 localized the BHV-1 dUTPase gene within the HindIII J fragment as predicted. To further map its location within the HindIII J fragment, pSD57 was digested with various restriction endonucleases and analyzed by Southern transfer using the PCR product as a probe. Results from these experiments mapped the PCR product to a 1.5 kb XhoI fragment (FIG. 1). Sequence determination of this 1.5 kb XhoI fragment revealed a large, but incomplete open reading frame (ORF), which extended beyond the left boundary of the XhoI fragment. Additional subclones to include the region immediately adjacent to the XhoI fragment were produced from pSD57, and corresponding DNA sequences were determined.
As a result, a 975 bp ORF sufficient to encode a 325 amino acid protein (FIG. 6) was identified. A TATA box, typical of promoter sequences recognized by eukaryotic RNA polymerases was found at 271 bp upstream from the translation initiation codon. The translation initiation codon (A at position +1) is positioned within a favored-context, where an adenine occurs at position -3 and a guanidine at position +4 (Kozak (1984) Nuc. Acid Res. 12:857-872). No obvious consensus polyadenylation signal sequence could be identified within the region sequenced at the 3' end of the gene. The coding sequence consisted of 16.2% T, 15.6% A, 37% C and 31.1% G, which is consistent with high GC content of the BHV-1 genome.
The genome location of the ORF was calculated to be between 0.059 and 0.0666 m.u. It has been previously shown that the BHV-1 homolog of the HSV 1 UL47 gene resides between 0.088 and 0.108 m.u. (Carpenter and Misra (1991) J. Gen. Virol. 72:3077-3084). As the UL47 gene and the currently identified ORF are transcribed in opposite directions, the distance between these two genes can be estimated to be 0.022 m.u., or about 3 kbp. This approximates the distance of 3984 bp that separates the HSV-1 UL47 and UL50 genes (McGeoch et al. (1988) J. Gen. Virol. 69:1531-1574). Therefore, the ORF identified appears to be collinear with the HSV-1 UL50 gene (i.e., the HSV-1 dUTPase gene).
The protein encoded by the BHV-1 ORF has a calculated molecular weight of 34 kilodaltons and an isoelectric point (pI) of 9.07. Its amino acid sequence shares significant homology with dUTPases of HSV-1 (40%), VZV (41.5%) and EBV (35.3%), and in particular it possesses all five conserved amino acid motifs characteristic of all dUTPases identified to date (McGeoch (1990) Nuc. Acid Res. 18:4105-4110; McIntosh et al. (1992) Proc. Natl. Acad. Sci. 89:8020-8024). Taken together these results indicate that the ORF encodes the BHV-1 dUTPase.
Construction of a dUTPase Gene Deletion Mutant
In order to prove that the identified gene encodes a functional dUTPase, an attempt was made to construct a dUTPase gene deletion mutant, by homologous recombination (Liang et al. (1991) J. Virol. 65:1124-1132). The transfer vector, pDUC/Z, was used to generate this mutant and the predicted restriction endonuclease map at the dUTPase gene locus in the mutant virus, vDUC/Z. According to the design of the transfer vector, the genome of the mutant virus should contain a 573 bp NcoI-DraI fragment deletion, including 364 bp of 5' flanking sequence and 209 bp of 5' coding sequence of dUTPase gene. To facilitate screening for the mutant virus, the deleted gene fragment was replaced by a BHV-1 gIII promoter-controlled E. coli lacZ gene expression cassette. The recombinant virus was generated by cotransfecting MDBK cells with the transfer vector, pDUC/Z, and naked BHV-1 genomic DNA, and identified by its production of .beta.-galactosidase.
The genomic configuration of the recombinant virus was verified by Southern blot analysis. A probe consisting of the approximately 0.6 kbp NcoI-DraI fragment (deleted in the transfer vector) from of the dUTPase gene locus was used to probe the XhoI digested wt BHV-1 DNA and mutant virus DNA. This probe hybridized to wt BHV-1 DNA but not the genomic DNA of the mutant, indicating that the NcoI-DraI fragment was deleted from the mutant virus. When a 1.5 kbp XhoI fragment isolated from the BHV-1 gIII gene region (which includes both 5' flanking sequences and the gIII gene coding sequence) was used as a probe, it hybridized to a 1.5 kbp fragment from both the wt and the mutant virus. This fragment represents the XhoI fragment at the gIII gene locus. An additional band of about 5.3 kbp in the mutant virus also was found to be recognized by this probe. This is the predicted size of the XhoI fragment, containing the gIII promoter-lacZ gene expression cassette, at the dUTPase gene locus in the mutant virus. The results from the Southern analysis confirmed the expected genomic organization of the mutant virus.
Lack of dUTPase Activity of the Mutant Virus
The virus-encoded dUTPase activity in wt and mutant virus infected cells was examined. The assay was performed on both cytoplasmic and nuclear extracts of virus infected cells. dUTPase activity was determined on the basis of production of dUMP. The wt BHV-1 infected cell lysate (either fraction) had a significantly higher (approximately 3 times higher) dUTPase activity than the mock infected cell lysate, whereas lysates of mutant virus infected cells had activities comparable to the mock infected cell lysates. Therefore, the mutant virus lacked virus-coded dUTPase activity. In wt BHV-1 infected cells, the cytoplasmic extract contains much higher dUTPase activity than the nuclei. This indicates that BHV-1 dUTPase exists mainly in the cytoplasm of infected cells.
Example 7
Identification of the BHV-1 Homolog of the HSV 1 UL49.5 Gene
Further analysis of the sequenced fragment revealed an additional 288 bp ORF, positioned in the strand complementary to the dUTPase coding sequence, and overlapping the 5' end of the dUTPase ORF by 18 codons (FIG. 7). The map position of this newly identified ORF appears to correspond to the HSV-1 UL49.5 gene (Barker and Roizman (1992) J. Virol. 66:562-566; Barnett et al. (1992) J. Gen. Virol. 73:2167-2171), the VZV UL49.5 gene homolog (ORF9a) and the equine herpesvirus 1 (EHV-1) ORF10 (Barnett et al. (1992) J. Gen. Virol. 73:2167-2171). The amino acid sequence deduced from this BHV-1 ORF showed significant homology with the alphaherpesvirus UL49.5 homologs, particularly at the carboxyl-terminal half of the molecule. Further, the four heavily conserved amino acid residues (C, F, Y and V) present in the carboxyl-terminal half of all alphaherpesvirus UL49.5 homologs thus far identified, were also conserved on the BHV-1 sequence. Hydrophobicity analysis of the deduced amino acid sequence of the BHV-1 ORF revealed pronounced hydrophobic domains located at the amino- and carboxyl-terminus of the molecule. The amino-terminal hydrophobic sequence is followed by a putative signal sequence cleavage site between amino acid residues 17 and 18. This profile is highly characteristic of a membrane bound protein, and is consistent with other previously identified UL49.5 gene products. On the bases of these properties, it was determined that this ORF encodes the BHV-1 homolog of HSV UL49.5.
Example 8
Selection of Promoters
The nucleocapsid gene (which encodes VP4) was mapped via the Southern hybridization technique, using the HSV-1 nucleocapsid gene (Davison and Scott (1986) J. Gen. Virol. 67:2279-2286) as a probe and partially sequenced. Constructs for the insertion of a reporter gene comprising a truncated form of the BHV-1 gIV gene lacking sequences encoding the glycoprotein anchor under the control of the nucleocapsid gene promoter into the dUTPase locus of BHV-1 are made. The level of gene expression elicited by the nucleocapsid gene promoter, measured by the amount of gIV appearing in the media of recombinant virus infected cells, is compared to the expression achieved by the gIII promoter in an analogous construct. Additional constructs comprising a truncated form of the BHV-1 gIV gene as described above under the control of BHV-1 pVP8, pgIII and pgIV, as well as the HCMV IEP promoter and the PrV IEP promoter are made and the level of gene expression is determined for each of these promoters as described above.
The DNA sequence of the V.sub.MW65 gene is shown in FIG. 2 and its map location in FIG. 1. The efficacy of this promoter was determined using the truncated gIV gene as a reporter in a fashion identical to analyses of the nucleocapsid and gIII gene promoters.
In addition to direct isolation of promoters from known genes, a promoter trap vector for rescue of random promoter sequences was made based upon inserting restriction endonuclease generated BHV-1 subgenomic DNA fragments into a plasmid containing the gIII gene coding sequence plus its 3' untranslated region. The gIII gene promoter was deleted from the plasmid but it contained BHV-1 genomic DNA that normally resides immediately upstream of this promoter. Genomic DNA fragments produced by digestion with Sau 3A, Sau 96A or Mae III and treated with Klenow enzyme to fill-in asymmetric ends were inserted into the Klenow enzyme treated Nco I site (which contained the gIII gene's initiation codon) of the trap vector. Transforming E. coli with this mixed population of plasmids produced clone banks in which the gIII gene's promoter was replaced by random subgenomic fragments of BHV-1 DNA.
These clone banks were used to cotransfect cells in conjunction with genomic DNA isolated from the gIII gene deleted virus. Recombinant viruses capable of expressing gIII were then isolated by the black plaque assay, described in Liang et al. (1991) J. Virology 65:5553-5557. The gIII expressing viruses were produced by recombination events between genomic DNA from the gIII- mutant virus and plasmids that carry BHV-1 DNA fragment inserts at the Nco I cloning site capable of driving the expression of the gIII gene. The random promoter fragments were removed from the trap vector by Nco I digestion, since this site can be reconstructed by the fragment cloning regime described above. Promoter strength and timing of expression of these random promoters is assessed by using them to drive the expression of a reporter gene inserted into BHV-1 such as the truncated gIV gene construct. The map position of the relevant random promoters is established by Southern analyses using the promoter fragment as a probe of the BHV-1 genomic clones. At least three BHV-1 segments that cause high-level expression of the gIII gene are isolated.
Example 9
Foreign Gene Expression
Initially, the IL-2 gene is cloned at the BHV-1 gIII gene locus using the resident gIII gene promoter to drive its expression using the co-transfection techniques of Example 7. First, gIII negative recombinant viruses are isolated using gIII reactive antibodies in a black plaque assay. Production of IL-2 by the recombinant virus is determined using a IL-2-dependent cell line. Lawman et al., Virol. Immunol. 1:165 (1987/88).
Example 10
Expression of PRV gIII
The pseudorabies virus (PRV) gIII glycoprotein gene (Liang et al. (1991) J. Virology, 65:5553-5557) was also inserted and expressed at the BHV-1 gIII locus under the control of the BHV-1 gIII gene promoter. PRV gIII was produced at levels equalling the amount of BHV-1 gIII produced by wild-type virus. The conformation of recombinant PRV gIII was indistinguishable from authentic PRV gIII as demonstrated by its proper functioning in the virus replication process of the PRV gIII.sup.+ mutant and in antibody responses to it, for example, monoclonal antibodies that neutralize PRV infectivity and specifically recognize PRV gIII also neutralized infectivity of the BHV-1 mutant expressing PRV gIII.
Example 11
Expression of Lkt A
The leukotoxin gene (Lkt A) from Pasteurella haemolytica, was also inserted and expressed at the BHV-1 gIII locus under the control of the BHV-1 gIII gene promoter. The lkt A gene construct used in the production of the recombinant BHV-1 was identical to the one currently employed in the production of commercial P. haemolytica vaccine. The product was recognized by antiserum produced to leukotoxin.
Example 12
Mapping and DNA Sequencing of BHV-1 V.sub.MW65 Gene Homolog
The HSV-1 V.sub.MW65 gene was used as a probe in a Southern blot analysis of the BHV-1 genomic clones to map the position of its BHV-1 gene homolog. The map location of the BHV-1 V.sub.MW65 gene homolog is co-linear with the V.sub.MW65 gene in the HSV-1 genome. The BHV-1 DNA at this region was sequenced revealing a single open reading frame with a coding capacity for 505 amino acids. The amino acid sequence translated from this open reading frame shares 30% homology with the amino acid sequence of the HSV-1 V.sub.MW65 gene product and 37.1% homology with the VZV homolog.
Example 13
Construction of a BHV-1 Mutant Virus Lacking VP16 Transactivating Activity
The BHV-1 V.sub.MW65 gene homolog product, VP16, is expected to function like its HSV-1 homolog and, therefore, a nonspecific alteration of this protein is likely to be lethal to the virus. Thus, in order to mutate this protein, it is necessary to first define the structure responsible for its transactivating activity. A set of BHV-1 V.sub.MW65 gene homolog expression vectors is constructed such that each vector contains a different in-frame linker insertion in the V.sub.MW65 gene homolog coding sequence. Such in-frame linker insertions do not disrupt the overall protein structure but, once introduced into the correct location, can inactivate the protein's trans-activating activity. Based on the information used to characterize this domain in HSV V.sub.MW65, the linker insertions are focused on the carboxyl-terminal half of the BHV-1 V.sub.MW65 molecule. These vectors are tested in transactivation assay systems according to the methodology of Example 11. The domain in the V.sub.MW65 sequence responsible for transactivation is identified by inserting linkers in the domain and identifying that portion of the domain wherein linker insertion eliminates transactivation. This same mutated V.sub.MW65 sequence is used to construct a transfer vector for generating a recombinant virus with a V.sub.MW65 mutation. The same linker is radiolabeled and used as a probe for screening and isolating the desired recombinant virus.
Example 14
Evaluation of Relative Promoter Strengths
Construction of transfer vector. Plasmid po126 (Robbins et al. (1986) J. Virol. 58:339-377) was cut with NarI, the resulting ends were repaired with T4 polymerase, and the plasmid was then cut with PvuII. After agarose gel electrophoresis, the plasmid backbone was isolated from the gel and ligated to a 2.4 kb blunt end-repaired NcoI fragment of pSD57 to create plasmid tUL50. Plasmid tUL50 was used for the insertion of the LacZ gene under the transcriptional control of different promoter elements into the DUTPase locus.
Construction of LacZ Expression Cassettes
(a) Plasmid tUL50/VP8Lac: First, a 600 bp HindIII-NcoI fragment from pSD62 and a 3.3 kb NcoI-HindIII fragment from pgIII/LacZ, which contains the LacZ gene followed by the SV40 polyadenylation signal, were ligated with HindIII-digested SL301, creating plasmid SLvp8/LacZ. SLvp8/LacZ was digested with HindIII and the large fragment, which contained the LacZ gene flanked on the 5' end by the vp8 promoter and on the 3' end by the SV40 polyA signal, was isolated, blunt end repaired, and ligated to XhoI digested, T4 polymerase treated tUL50.
(b) Plasmid tUL50/gCLac: Plasmid tUL50/gCLac was constructed by ligating the blunt end-repaired SphI-HindIII fragment of pgIII/LacZ with blunt end repaired, XhoI digested tUL50.
(c) Plasmid tUL50/IELac: First, the 800 bp HindIII-NcoI fragment (containing PRV IE gene promoter) from psy742 and the 3.3 kb NcoI-HindIII fragment from pgIII/LacZ were ligated with HindIII-digested SL301 creating plasmid SL/IELac. This plasmid was digested with HindIII and the large fragment was isolated, blunt end-repaired and ligated to XhoI digested, T4 polymerase treated tUL50.
d) Plasmid tUL50/gIVLac: Plasmid pGIV5.sup.- 3.sup.- was digested with NcoI and HindIII. The vector backbone was isolated from an agarose gel and ligated to the 3.3 kb NcoI-HindIII fragment of pgIII/LacZ to create plasmid gIV/Lac. This plasmid was digested with XhoI and HindIII and the large fragment was isolated, blunt end repaired and ligated to XhoI digested, T4 polymerase treated tUL50.
Construction of Recombinant Viruses. MDBK cells were cotransfected with 10 ug of purified BHV-1 genomic DNA and 10 ug of linearized plasmid DNA using a Bio-Rad gene pulser at 500 uF and 200 volts. The recombinant viruses were selected by a blue plaque assay by incorporating cromogenic substrate Bluo-gal (Gibco BRL, Gaithersburg, Md.) in the agarose overlays of virus infected cells.
.beta.-galactosidase activity. Monolayers of MDBK cells in six well plates were infected with the individual recombinant viruses or wild type BHV-1 at a multiplicity of 5 pfu/cell. After 24 hrs of infection the cells were detached with a cell scraper in 1 ml of PBS. After centrifugation for 5 min at 3500 rpm, the cell pellet was resuspended in 100 ul of 0.1M Tris-HCl, pH 7.8, 0.5% Triton X-100 and lysed for 15 min at 37.degree. C. The tubes were centrifuged for 10 min at 15,000 rpm and the supernatant was processed further as described (Bignon et al. (1993) BioTechniques 15:243-245). Briefly, 4 .mu.l of each supernatant was loaded individually in wells of 96 well plates. Next, 180 .mu.l of PBS containing 0.36% (vol./vol.) .beta.-mercaptoethanol and 0.7 mg/ml of o-nitro-phenyl .beta.-D-galactopyranoside was added to each well using a multichannel pipet. The contents of the wells were mixed by gentle shaking and the plate was sealed with a plastic sheet and incubated at 37.degree. C. for 15 minutes. The optical density was measured at 420-nm wavelength.
The results (FIG. 10) indicate that the LacZ gene expression was greater when the gene was driven by the vp8 promoter than by the gIII, gIV or IE promoters.
Example 15
The Bovine Herpesvirus 1 Homolog of Herpes Simplex Virus UL49 is Not Essential for Virus Growth in Cell Culture
The virions of alphaherpesviruses contain a number of tegument proteins situated between the nucleocapsid and envelope (Roizman and Sears, Herpes simplex viruses and their replication (1990), pp. 1795-1841, In B. N. Fields, D. M. Knipe, et al. (ed), Virology, 2nd ed. Raven Press, Ltd., New York). These tegument proteins serve at least two major functions: serving as virion structural components and participating in regulating viral gene expression.
The herpes simplex virus type 1 (HSV 1) major tegument protein, .alpha.-transinducing factor (.alpha.-TIF, vp16 or Vmw65), has been most extensively characterized with respect to gene regulation. .alpha.-TIF forms a complex with cellular transcription factors, including Oct-1, by which it interacts with a consensus sequence in proximity to the promoters of viral immediate-early (IE) genes and regulates the expression of the IE genes (Doging and O'Hare (1989) Virology 173:363-367). In the normal HSV 1 replication cycle, .alpha.-TIF-dependent IE gene activation constitutes the first step of viral gene expression. Mutant virus lacking .alpha.-TIF exhibits significantly impaired infectivity, establishing infection only at a high multiplicity of infection (m.o.i) and is avirulent in vivo (Ace et al. (1989) J. Viol. 63:2260-2269).
HSV 1 .alpha.-TIF is encoded by the UL48 gene. In the viral genome, the Ul48 is surrounded by three additional tegument protein genes, UL46, UL47, and UL49. The UL46 and UL47 gene products appear to be involved in modulating the .alpha.-TIF-dependent transcription process (McKnight et al. (1986) Cancer Cells 4:163-1734; McKnight et al. (1987) J. Virol. 61:992-1001). UL46 and UL47 genes are nonessential for virus growth in culture; nevertheless, mutants with a deletion of either gene exhibit reduced replication efficiency (Zhang et al. (1991) J. Virol. 65:829-841). The UL49 gene has been shown to encode the tegument protein vp22 (Elliott and Meredith (1992) J. Gen Virol. 73:723-726). vp22 is highly phosphorylated and appears to associate with the nuclear matrix during virus replication (Elliott and Meredith (1992) J. Gen Virol. 73:723-726; Pinard et al. (1987) J. Gen Virol. 68:727-735), implying its involvement in gene regulation. However, the actual function of UL49 gene product is not known, and it is likewise not known whether it is essential for virus growth.
Bovine herpesvirus 1 (BHV 1), a member of alphaherpesviridae subfamily, is an important pathogen in cattle (Gibbs and Rweyemamu (1977) Vet. Bull. 47:317-343). The virion of BHV 1 contains 25 to 33 proteins (Carpenter and Misra (1991) J. Gen. Virol. 72:3077-3084; Pastoret et al. (1980) Vet. Microbiol. 5:187-192). The most abundant virion protein, vp8, has been identified as the product of a gene homologous to HSV 1 UL47 (Misra et al. (1981) J. Virol. 40:367-378). More recently, the UL48 homolog of BHV 1 has also been mapped and sequenced (Carpenter and Misra (1992) Gene 119, 259-263; Liang et al., unpublished results). The genomic locations of both BHV 1 UL47 and UL48 homologs are colinear with their HSV 1 counterparts. Interestly, neither the BHV 1 UL47 nor the UL48 gene products contains the acidic domain present in HSV 1 .alpha.-TIF that is responsible for the transinducting activity of HSV 1 .alpha.-TIF.
Using a probe derived from the coding sequence of HSV 1 UL48 gene, the BHV 1 (Cooper strain) UL48 homolog gene was mapped and subsequently sequenced (Liang et al., unpublished). In addition, by using a degenerate oligonucleotide-based polymerase chain reaction procedure, we identified that the UL50 homolog gene encoding BHV 1 deoxyuridine triphosphatase (dUTPase; Liang et al. (1993) Virology 195:42-50). Based on the genomic organization of HSV 1 (McGeoch et al. (1988) J. Gen Virol. 69:1531-1574), it was possible that BHV 1 UL49 homolog was located between the UL48 homolog and dUTPase genes.
To identify the UL49 homolog gene, the BHV 1 genomic sequence at the region between the UL48 homolog and dUTPase genes was determined. As a result, a 774-bp open reading frame (ORF) was found which is sufficient to encode a 258 amino acids (FIG. 11). The UL49 homolog ORF is colinear with the genomic location of HSV UL49. The DNA sequence of the 3' portion of the UL49 homolog ORF is consistent with the partial sequence recently reported by Carpenter and Misra ((1992) Gene 119:259-263). A putative TATA box, typical of a promoter sequence recognized by eukaryotic RNA polymerase, was found at 86 bp upstream of the ORF, which is preceded by a putative G-C rich sequence. The translation initiation codon (A at position +1) is positioned within a favoured context, in which a guanidine occurs at position -3 and position +4 (Kozak (1984) Nucleic Acids Res. 12:857-872). In addition, a typical polyadenylation signal sequence, AATAAA (Birnstiel and Busslinger (1985) Cell 41:349-359), is found 64 bp after the translation termination codon. The coding sequence consists of 14.1% A, 35.8% C, 15.5% T and 34.6% G.
The protein encoded by the BHV 1 ORF has a calculated molecular weight of 27 kD and an isoelectric point (pI) of 10.379 and contains three potential phosphorylation signals at residues 8, 33, and 200, respectively. Its amino acid sequences shares significant homology (30.5%) with the UL49 product of HSV 1 and the homolog of varicella-zoster virus (VZV, FIG. 12). These features together strongly suggest the ORF is the BHV 1 homolog of the HSV 1 UL49 gene.
In order to test whether the UL49 homolog is essential for virus growth, as well as to facilitate characterization of the UL49 homolog gene, a UL49 homolog gene deletion mutant was generated by homologous recombination (Liang et al. (1991) J. Virol. 65:1124-1132). FIG. 13 shows the schematic representation of the transfer vector, pdUL49Z, used to generate this mutant and the predicted restriction endonuclease map at the UL49 homolog gene locus in the mutant virus, vdUL49Z. According to the design of the transfer vector, the genome of the resultant mutant virus should contain a 280-bp NcoI-XhoI fragment deletion at the 5' end of the coding sequence.
To facilitate screening for the mutant virus, the deleted gene fragment was replaced by a BHV 1 gIII promoter-controlled E. Coli lacZ gene expression cassette. The recombinant virus was generated by cotransfecting Madin Darby bovin kidney (MDBK) cells with the transfer vector, pdUL49Z, and naked BHV 1 genomic DNA. Virus resulting from transfection was screened for .beta.-galactosidase expression by a blue plaque assay (Liang et al. (1993) Virology 195:42-50). From one of the initial blue plaques, a mutant virus was isolated, which after two additional plaque purification steps was used for subsequent studies. This virus was designated as vdUL49Z.
The genomic configuration of vdUL49Z was verified by Southern blot analysis. The cellular DNA from the wt BHV 1 or from cells infected with mutant was isolated at 10 h postinfection according to Maniatis et al. ((1982) MOLECULAR CLONING: A LABORATORY MANUAL, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.), digested with AseI and NcoI, separated on a 1% agarose gel, transferred to a nitrocellulose filter, and probed with a 1.6 kb AflII-AseI fragment (see FIG. 13). As expected, a 0.9 kb and 0.5 kb hybridizing fragments were detected in the Southern blot of the wt BHV 1 infected cells; whereas a 4 kb and a 1 kb hybridizing fragment could be detected in the blot of the mutant virus infected cells (FIG. 14).
To further ascertain whether the gene was functional, the UL49 homolog gene transcripts was examined in both the wt BHV 1 and total cytoplasmic RNA from cells infected with the mutant virus was analyzed by Northern blotting. When probed with the NcoI-XhoI fragment located at the 5' end of the UL49 homolog gene coding sequence, two distinct bands were revealed, one about 1.2 kb and the other 0.9 kb in the wt BHV 1 infected cells, whereas both bands were absent, as expected, in either the mock infected cells or in the mutant infected cells (left panel of FIG. 15). According to the sequence, the putative TATA box and poly-A signal sequences of the UL49 homolog gene are 936 bp apart, which is consistent with the size of the smaller transcripts detected. This strongly suggests that the 0.9 kb transcripts are coded for by the UL49 homolog gene.
A 288-bp BHV 1 UL49.5 gene ORF which overlaps with, but in an opposite direction to, the dUTPase gene (UL50 homolog), has recently been identified (Liang et al. (1993) Virology 195:42-50). When arranged together with the sequence of the UL49 homolog gene, the UL49.5 homolog gene was found to be 86 bp upstream of the UL49 homolog gene ORF.
It was possible that the 1.2 kb transcripts are transcribed from the UL49.5 gene promoter but coterminate with the UL49 gene transcripts. To evaluate this possibility, a 503 bp MaeIII--MaeIII fragment located at 102 bp upstream of the UL49 homolog ORF was used as a probe to detect the viral transcripts on a Northern blot. Total cytoplasmic RNA in the virus infected cells was isolated at 10 h postinfection according to a method described by Kowlaski and Denhardt ((1989) Mol. Cell. Biol. 9:1946-1957). 10 Mg of RNA per sample was separated on a 1.2% argarose-formaldehyde gel, transferred to nitrocellulose paper and probed with a 280 bp NcoI-XhoI fragment at the 5' end of UL49 homolog coding sequence (left panel), or with a 530 bp MaeIII--MaeIII fragment located 102 bp upstream of the UL49 homolog gene (right panel). The molecular size was determined by comparison with a RNA ladder (GIBCO/BRL Canada, Burlington, Ontario, Canada) run in parallel with the testing samples. The probe detected only the 1.2 kb transcripts in the wt virus-infected cells (right panel of FIG. 15). The result therefore supports the prediction that the transcripts of UL49 and UL49.5 homolog genes coterminate. It should be noted that the transcripts of HSV 1 UL49 and UL49.5 also coterminate (Hall et al. (1982) J. Viol. 43:594-607).
To assess the effect of UL49 homolog gene deletion on replication of the virus in cell culture, the mutant virus was compared with wt BHV 1 in a single step growth curve experiment. Subconfluent MDBK cells grown in 12 well culture places were infected with either the wt BHV 1 or the mutant at an m.o.i. of 4. At indicated times post-infection, the infected cultures were collected. Samples were subjected to three freeze-thaw cycles to release the cellular virus and then titrated on MDBK cells. As shown in FIG. 16 (which represents the means of duplicate samples) the mutant virus showed a reduced yield comparing with the wt BHV 1. Thus, the deletion of the UL49 homolog gene resulted in a reduction of the virus replication in the cell culture.
In summary, the nucleotide sequence of bovine herpesvirus 1 (BHV 1) genome at a region between the previously identified UL48 and UL50 homolog genes of herpes simplex virus was determined, revealing an open reading frame of 774 base pairs capable of encoding 258 amino acids. The deduced amino acid sequence of the open reading frame shares significant homology with the herpes simplex virus type 1 UL49 gene product and the UL49 homolog of varicella-zoster virus, suggesting that this open reading frame is the BHV 1 homolog of HSV UL49. Northern blot analysis using a probe derived from the BHV 1 UL49 homolog gene detected two transcripts of 0.9 and 1.2 kilobase pairs in wild type BHV 1 infected cells. Further analysis showed that the two transcripts coterminate and correspond to that derived from the UL49 homolog gene and that of the previously identified UL49.5 gene, respectively. Based on these information, we constructed a BHV 1 mutant, in which a part of the UL49 gene coding sequence was replaced by a BHV 1 gIII promoter-E.coli LacZ gene expression cassette. Comparing the wild type BHV 1, the mutant virus showed a reduced replication efficiency in vitro. The generation of the UL49 deletion mutant indicates that the BHV 1 UL49 homolog is not essential for the virus growth in cell culture.
The UL49 homolog mutant is a valuable tool to further study the function of UL49 gene product with respect to BHV 1 IE gene expression. Further, the mutant virus can be tested in cattle, the natural host of BHV 1, to determine role of the UL49 homolog in viral pathogenesis.
While the present invention has been illustrated above by certain specific embodiments, it is not intended that the specific examples should limit the scope of the invention as described in the appended claims.
__________________________________________________________________________# SEQUENCE LISTING- (1) GENERAL INFORMATION:- (iii) NUMBER OF SEQUENCES: 21- (2) INFORMATION FOR SEQ ID NO:1:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 1788 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear- (ix) FEATURE: (A) NAME/KEY: CDS (B) LOCATION: 97..1611#ID NO:1: (xi) SEQUENCE DESCRIPTION: SEQ- CGAGCGGCGC GCGGCTTAAG CAGCGCGCTG CTGTGCTAGT ATGAAAATAA AC - #GCTTGTTA 60#CGC ATA AAA 114AG TTGCGTTGTC TTTGGG ATG AGC GGG# Met Ser Gly Arg Ile Lys# 5 1- ACC GCG GGC CGC GCG CTC GCC AGT CAG TGC GG - #C GGT GCT GCG GCG GCA 162Thr Ala Gly Arg Ala Leu Ala Ser Gln Cys Gl - #y Gly Ala Ala Ala Ala# 20- ACC ATG GAC CCG TAC GAC GCC ATT GAA GCG TT - #C GAT GAC TCC CTG CTC 210Thr Met Asp Pro Tyr Asp Ala Ile Glu Ala Ph - #e Asp Asp Ser Leu Leu# 35- GGG TCG CCG CTC GCG GCG GGG CCG CTT TAT GA - #C GGC CCG TCC CCC GCG 258Gly Ser Pro Leu Ala Ala Gly Pro Leu Tyr As - #p Gly Pro Ser Pro Ala# 50- CGG TTC GCG CTG CCG CCC CCG CGC CCG GCT CC - #C CTG GCC GCG TTG CTG 306Arg Phe Ala Leu Pro Pro Pro Arg Pro Ala Pr - #o Leu Ala Ala Leu Leu# 70- GAG CGA ATG CAG GCC GAG CTG GGC TTC CCC GA - #C GGC CCC GCG CTG CTG 354Glu Arg Met Gln Ala Glu Leu Gly Phe Pro As - #p Gly Pro Ala Leu Leu# 85- CGG GCC ATG GAG CGG TGG AAC GAG GAC TTA TT - #C TCG TGT CTG CCG ACC 402Arg Ala Met Glu Arg Trp Asn Glu Asp Leu Ph - #e Ser Cys Leu Pro Thr# 100- AAC GCA GAC CTG TAC GCA GAC GCC GCG CTG CT - #C TCG GCA GAC GCA GAC 450Asn Ala Asp Leu Tyr Ala Asp Ala Ala Leu Le - #u Ser Ala Asp Ala Asp# 115- GCG GTA GTG GGC GCC ATG TAC CTA GCG GTG CC - #T GGG GAC GCG GAG CGC 498Ala Val Val Gly Ala Met Tyr Leu Ala Val Pr - #o Gly Asp Ala Glu Arg# 130- TTG GAC TTG AAC GCG CAC GCG AAC CAG CCG CT - #T CCC GCA CCG CCG GCC 546Leu Asp Leu Asn Ala His Ala Asn Gln Pro Le - #u Pro Ala Pro Pro Ala135 1 - #40 1 - #45 1 -#50- TCG GAG GAG GGC CTC CCG GAG TAT GTG GCC GG - #C GTA CAG GCG CAT TTT 594Ser Glu Glu Gly Leu Pro Glu Tyr Val Ala Gl - #y Val Gln Ala His Phe# 165- CTG GCA GAG CTG CGC GCG CGG GAA GAG CGG TA - #C GCG GGC CTG TTT TTG 642Leu Ala Glu Leu Arg Ala Arg Glu Glu Arg Ty - #r Ala Gly Leu Phe Leu# 180- GGC TAC TGC CGC GCG CTG CTG CAG CAC CTG CG - #C GCG ACG GCG GCG CGT 690Gly Tyr Cys Arg Ala Leu Leu Gln His Leu Ar - #g Ala Thr Ala Ala Arg# 195- GGC CGA GGC GCG GCG GGC GCG GGC GCC CAG GC - #A GAC CGC CTG CGG CAG 738Gly Arg Gly Ala Ala Gly Ala Gly Ala Gln Al - #a Asp Arg Leu Arg Gln# 210- CTG GTG GCG GCG CGG TAC TAC CGC GAG GCG AG - #C GCG CTG GCG CGG CTG 786Leu Val Ala Ala Arg Tyr Tyr Arg Glu Ala Se - #r Ala Leu Ala Arg Leu215 2 - #20 2 - #25 2 -#30- GCC TTT GCG CAT ATG TAC GTG GCG ACG GCG CG - #C GAA GTC TCT TGG CGC 834Ala Phe Ala His Met Tyr Val Ala Thr Ala Ar - #g Glu Val Ser Trp Arg# 245- CTG CAC TCC CAG CAG AGC CAG GCG CAG GGC GT - #G TTC GTT TCG CTG TAC 882Leu His Ser Gln Gln Ser Gln Ala Gln Gly Va - #l Phe Val Ser Leu Tyr# 260- TAT GCT TGG CCG CAG CGG CGG CAG TTC ACC TG - #C CTG TTC CAC CCC GTG 930Tyr Ala Trp Pro Gln Arg Arg Gln Phe Thr Cy - #s Leu Phe His Pro Val# 275- CTG TTC AAC CAC GGC GTC GTG GCG CTG GAG GA - #C GGC TTC TTG GAC GCG 978Leu Phe Asn His Gly Val Val Ala Leu Glu As - #p Gly Phe Leu Asp Ala# 290- GCG GAG CTG CGG CGG CTA AAC TAC CGG CGT CG - #G GAG CTG GGG CTG CCG1026Ala Glu Leu Arg Arg Leu Asn Tyr Arg Arg Ar - #g Glu Leu Gly Leu Pro295 3 - #00 3 - #05 3 -#10- CTG GTC CGC GCG GGG CTG GTC GAG GTT GAA GT - #G GGG CCT CTG GTG GAG1074Leu Val Arg Ala Gly Leu Val Glu Val Glu Va - #l Gly Pro Leu Val Glu# 325- GAG CCG CCG TTT TCG GGA AGC TTG CCG CGG GC - #G CTG GGC TTC CTG AAT1122Glu Pro Pro Phe Ser Gly Ser Leu Pro Arg Al - #a Leu Gly Phe Leu Asn# 340- TAC CAA GTA CGC GCG AAG ATG GGC GCG CCC GC - #C GAG GCC GGC GGG CGG1170Tyr Gln Val Arg Ala Lys Met Gly Ala Pro Al - #a Glu Ala Gly Gly Arg# 355- CTG GCG CCG GAG CGG GAG CAC TCG TAC GCG CG - #G CCG CGC GGC GCG ATC1218Leu Ala Pro Glu Arg Glu His Ser Tyr Ala Ar - #g Pro Arg Gly Ala Ile# 370- AAC TAC GGG ACG ACT CCA GAG GCC ATG TTG CG - #G CCC CCG TCG CCG AGC1266Asn Tyr Gly Thr Thr Pro Glu Ala Met Leu Ar - #g Pro Pro Ser Pro Ser375 3 - #80 3 - #85 3 -#90- GAA GTG CTG CCG TGC GAC CCC GCG CCA GCG GC - #T ACC GTG CGC GTG GCG1314Glu Val Leu Pro Cys Asp Pro Ala Pro Ala Al - #a Thr Val Arg Val Ala# 405- AGC CCC GCC ACA CAT CTG GCT CAG GCG CCT TC - #A GCC AAG GGC GCC GCC1362Ser Pro Ala Thr His Leu Ala Gln Ala Pro Se - #r Ala Lys Gly Ala Ala# 420- CCG GCC GAG TTT GCC GCC TTG GCT GGG CTT GC - #A AGG CCC GGT CCG GCC1410Pro Ala Glu Phe Ala Ala Leu Ala Gly Leu Al - #a Arg Pro Gly Pro Ala# 435- CCG CTC GCG GCG GCC CCG GCC CAA GCC CCG TT - #C GCA GCG GCC TTG GCC1458Pro Leu Ala Ala Ala Pro Ala Gln Ala Pro Ph - #e Ala Ala Ala Leu Ala# 450- TTA GCC GAG CCC GCG GCA GCC CTG GCC CCG GC - #C CCG CTT GCG GCG GCC1506Leu Ala Glu Pro Ala Ala Ala Leu Ala Pro Al - #a Pro Leu Ala Ala Ala455 4 - #60 4 - #65 4 -#70- CCA GCC GAG CCC GCG GCG GCC GTC GCC GGG CC - #A AGC CCG GCA AAC CCA1554Pro Ala Glu Pro Ala Ala Ala Val Ala Gly Pr - #o Ser Pro Ala Asn Pro# 485- TTC GGC GGC ACG TAT GAC GCG CTG CTG GGG GA - #C CGC CTC AAC CAG CTG1602Phe Gly Gly Thr Tyr Asp Ala Leu Leu Gly As - #p Arg Leu Asn Gln Leu# 500- CTG GAC TTC TAAGGGCGGG CGGGCAGTGG CGCTTTCGAC CCGGCGCGT - #G1651Leu Asp Phe 505- GCGTTTGCGA GGCCTCCCTC TGGCGTAAGG CCTCGTGGCG CCGCCCTGCG GG - #CGGCGCGA1711- GCGTATAAAA GCCACTTGGG TCTACACGGG ATTTAGTTTT CGCGCCCGCG GC - #TTTCTAGG1771# 1788 G- (2) INFORMATION FOR SEQ ID NO:2:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 505 amino (B) TYPE: amino acid (D) TOPOLOGY: linear- (ii) MOLECULE TYPE: protein- (xi) SEQUENCE DESCRIPTION: - # SEQ ID NO:2:- Met Ser Gly Arg Ile Lys Thr Ala Gly Arg Al - #a Leu Ala Ser Gln Cys# 15- Gly Gly Ala Ala Ala Ala Thr Met Asp Pro Ty - #r Asp Ala Ile Glu Ala# 30- Phe Asp Asp Ser Leu Leu Gly Ser Pro Leu Al - #a Ala Gly Pro Leu Tyr# 45- Asp Gly Pro Ser Pro Ala Arg Phe Ala Leu Pr - #o Pro Pro Arg Pro Ala# 60- Pro Leu Ala Ala Leu Leu Glu Arg Met Gln Al - #a Glu Leu Gly Phe Pro# 80- Asp Gly Pro Ala Leu Leu Arg Ala Met Glu Ar - #g Trp Asn Glu Asp Leu# 95- Phe Ser Cys Leu Pro Thr Asn Ala Asp Leu Ty - #r Ala Asp Ala Ala Leu# 110- Leu Ser Ala Asp Ala Asp Ala Val Val Gly Al - #a Met Tyr Leu Ala Val# 125- Pro Gly Asp Ala Glu Arg Leu Asp Leu Asn Al - #a His Ala Asn Gln Pro# 140- Leu Pro Ala Pro Pro Ala Ser Glu Glu Gly Le - #u Pro Glu Tyr Val Ala145 1 - #50 1 - #55 1 -#60- Gly Val Gln Ala His Phe Leu Ala Glu Leu Ar - #g Ala Arg Glu Glu Arg# 175- Tyr Ala Gly Leu Phe Leu Gly Tyr Cys Arg Al - #a Leu Leu Gln His Leu# 190- Arg Ala Thr Ala Ala Arg Gly Arg Gly Ala Al - #a Gly Ala Gly Ala Gln# 205- Ala Asp Arg Leu Arg Gln Leu Val Ala Ala Ar - #g Tyr Tyr Arg Glu Ala# 220- Ser Ala Leu Ala Arg Leu Ala Phe Ala His Me - #t Tyr Val Ala Thr Ala225 2 - #30 2 - #35 2 -#40- Arg Glu Val Ser Trp Arg Leu His Ser Gln Gl - #n Ser Gln Ala Gln Gly# 255- Val Phe Val Ser Leu Tyr Tyr Ala Trp Pro Gl - #n Arg Arg Gln Phe Thr# 270- Cys Leu Phe His Pro Val Leu Phe Asn His Gl - #y Val Val Ala Leu Glu# 285- Asp Gly Phe Leu Asp Ala Ala Glu Leu Arg Ar - #g Leu Asn Tyr Arg Arg# 300- Arg Glu Leu Gly Leu Pro Leu Val Arg Ala Gl - #y Leu Val Glu Val Glu305 3 - #10 3 - #15 3 -#20- Val Gly Pro Leu Val Glu Glu Pro Pro Phe Se - #r Gly Ser Leu Pro Arg# 335- Ala Leu Gly Phe Leu Asn Tyr Gln Val Arg Al - #a Lys Met Gly Ala Pro# 350- Ala Glu Ala Gly Gly Arg Leu Ala Pro Glu Ar - #g Glu His Ser Tyr Ala# 365- Arg Pro Arg Gly Ala Ile Asn Tyr Gly Thr Th - #r Pro Glu Ala Met Leu# 380- Arg Pro Pro Ser Pro Ser Glu Val Leu Pro Cy - #s Asp Pro Ala Pro Ala385 3 - #90 3 - #95 4 -#00- Ala Thr Val Arg Val Ala Ser Pro Ala Thr Hi - #s Leu Ala Gln Ala Pro# 415- Ser Ala Lys Gly Ala Ala Pro Ala Glu Phe Al - #a Ala Leu Ala Gly Leu# 430- Ala Arg Pro Gly Pro Ala Pro Leu Ala Ala Al - #a Pro Ala Gln Ala Pro# 445- Phe Ala Ala Ala Leu Ala Leu Ala Glu Pro Al - #a Ala Ala Leu Ala Pro# 460- Ala Pro Leu Ala Ala Ala Pro Ala Glu Pro Al - #a Ala Ala Val Ala Gly465 4 - #70 4 - #75 4 -#80- Pro Ser Pro Ala Asn Pro Phe Gly Gly Thr Ty - #r Asp Ala Leu Leu Gly# 495- Asp Arg Leu Asn Gln Leu Leu Asp Phe# 505- (2) INFORMATION FOR SEQ ID NO:3:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 7 amino (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:3: (xi) SEQUENCE DESCRIPTION: SEQ- Ile Asp Ser Gly Tyr Arg Gly# 5 1- (2) INFORMATION FOR SEQ ID NO:4:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 7 amino (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:4: (xi) SEQUENCE DESCRIPTION: SEQ- Ile Asp Ala Gly Thr Arg Gly# 5 1- (2) INFORMATION FOR SEQ ID NO:5:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 7 amino (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:5: (xi) SEQUENCE DESCRIPTION: SEQ- Glu Asp Ala Gly Phe Asp Ile# 5 1- (2) INFORMATION FOR SEQ ID NO:6:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 28 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:6: (xi) SEQUENCE DESCRIPTION: SEQ# 28 NGGN TAYCGNGG- (2) INFORMATION FOR SEQ ID NO:7:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 28 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:7: (xi) SEQUENCE DESCRIPTION: SEQ# 28 NGGN TAYAGRGG- (2) INFORMATION FOR SEQ ID NO:8:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 28 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:8: (xi) SEQUENCE DESCRIPTION: SEQ# 28 NGGN TAYCGNGG- (2) INFORMATION FOR SEQ ID NO:9:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 28 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:9: (xi) SEQUENCE DESCRIPTION: SEQ# 28 NCCN GCRTCYTC- (2) INFORMATION FOR SEQ ID NO:10:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 28 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:10:(xi) SEQUENCE DESCRIPTION: SEQ# 28 NCCN GCRTCYTC- (2) INFORMATION FOR SEQ ID NO:11:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 1851 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear- (ix) FEATURE: (A) NAME/KEY: CDS (B) LOCATION: 647..1621#ID NO:11:(xi) SEQUENCE DESCRIPTION: SEQ- CCTCGAGCGG CGGGCCGGCG CGGCGGCGGG CGCAGCTACG GTCGTCCCCG CG - #GCTGCGGC 60- TCGATCGCGG CCGCGGGCGG CGGGCTGGAC GGCTGCAGCG CTGGCGCACG CA - #CGGACGCT 120- AGCGCGCCGC CCGCTCGGCT CGGGTCCGCT CGTCGCGGCG CGCAGCTCTT CG - #TATACGTG 180- GTCATCCGAG CCGGACTCGT AGTCATAGAG GCTGTTTTCT CGCACCCAAA GG - #TCGCTGTA 240- CTCGTAATCG TCCTCGTCTT CGGAGGGCCT GTGGAACCGG GCCATGGCAA GC - #GAGTCGGC 300- GGGCCGGCGG GCGTGCAGCT CAAAGCGGGT CGGGCCGAGT GCGAAAAAGG CA - #GCGGTCGC 360- CGGGACCGCG AGCTTTATAT ACAAGTTACT CCGCAGCGTT GCGGTCAATC AG - #CCCCGCCC 420- CCGCGACTCC TTTTTATTGG GCCCGCTGGC GCCCATGAGC CTAAAGCAAA GC - #CCGTACGC 480- GTACAGGGCC ACGGCGACCA TTACCGCGGT CAGGGCCACG TAAAAAACAA CC - #AGGGCCTG 540- CGGTGGCTCC GAGAGCGGCA CCCCGCGCGC GTAGCAGCCT GCGCTCCAAA AG - #TCCATTGC 600#GCA AAC 655CGCGT CTAGCAGGGG GTCGCGGCCG CGCACG ATG#Asn Met Ala- AGC GCG GCG GCC ACA ACC GCA ACG ATG AGC GG - #C GAC CGC GGC ATC CTC 703Ser Ala Ala Ala Thr Thr Ala Thr Met Ser Gl - #y Asp Arg Gly Ile Leu# 520- GTC GTA GAG CTC AAC GCG GAG GCG GCC CCC TG - #G CGG TTG GAA AGC TGC 751Val Val Glu Leu Asn Ala Glu Ala Ala Pro Tr - #p Arg Leu Glu Ser Cys525 5 - #30 5 - #35 5 -#40- TGT GAG CCC GAC TCG CTG GCG CTC TGG GGC CC - #A ATT GCG CCA GCA GCA 799Cys Glu Pro Asp Ser Leu Ala Leu Trp Gly Pr - #o Ile Ala Pro Ala Ala# 555- AAG CGA GAT GAA ACA GCC CCG TCG GGA TCT CT - #C CTT TAT AGC CGG CTG 847Lys Arg Asp Glu Thr Ala Pro Ser Gly Ser Le - #u Leu Tyr Ser Arg Leu# 570- ATT AAT TTA AAC ATG AAG GCG GCC GCG CCC GG - #C GGA TAT GCC ATT ATA 895Ile Asn Leu Asn Met Lys Ala Ala Ala Pro Gl - #y Gly Tyr Ala Ile Ile# 585- ATG TCG CAA ATG CGC TCG GGT GAC ACA CAC AT - #G CCC CGC CCA CCA GCC 943Met Ser Gln Met Arg Ser Gly Asp Thr His Me - #t Pro Arg Pro Pro Ala# 600- GTG GCC GTC GGC ATC GTC GAC TCG GGC TAC TC - #G GGG ATC TTG CGC GCC 991Val Ala Val Gly Ile Val Asp Ser Gly Tyr Se - #r Gly Ile Leu Arg Ala605 6 - #10 6 - #15 6 -#20- ATC GTC TGG GCG CCC GAG TCC GCA GCG GCC GC - #T CCC CCG GCG GGG CTT1039Ile Val Trp Ala Pro Glu Ser Ala Ala Ala Al - #a Pro Pro Ala Gly Leu# 635- GCG CTG CGG CTG ACG CTC GCG CGG CTA ACC AC - #C ACG CTG CCT CGC CTC1087Ala Leu Arg Leu Thr Leu Ala Arg Leu Thr Th - #r Thr Leu Pro Arg Leu# 650- ATC GCC GTC GAC GAC GAC GCA AAC GCC GGG AC - #A GAG GCG GGC GTC GAA1135Ile Ala Val Asp Asp Asp Ala Asn Ala Gly Th - #r Glu Ala Gly Val Glu# 665- GTG CCC TTC TTT GCC ACG TTC GCC CCC AAA CG - #C GAC GAG GAC GCC GGG1183Val Pro Phe Phe Ala Thr Phe Ala Pro Lys Ar - #g Asp Glu Asp Ala Gly# 680- TAC GAT ATT GCC ATG CCA TAC ACG GCC GTC TT - #G GCA CCC GGG GAA AAT1231Tyr Asp Ile Ala Met Pro Tyr Thr Ala Val Le - #u Ala Pro Gly Glu Asn685 6 - #90 6 - #95 7 -#00- TTA CAC GTG CGG CTG CCC GTA GCC TAC GCG GC - #A GAC GCC CAC GCT GCC1279Leu His Val Arg Leu Pro Val Ala Tyr Ala Al - #a Asp Ala His Ala Ala# 715- GCG CCC TAC GTG TTT GGT CGA TCG TCC TGC AA - #C CTT CGG GGG CTG ATC1327Ala Pro Tyr Val Phe Gly Arg Ser Ser Cys As - #n Leu Arg Gly Leu Ile# 730- GTC CTG CCG ACA GCC TGG CCC CCC GGG GAG CC - #C TGC CGC TTT GTC TTG1375Val Leu Pro Thr Ala Trp Pro Pro Gly Glu Pr - #o Cys Arg Phe Val Leu# 745- CGA AAC GTC ACG CAG GAA CCG CTC GTT GCT GC - #C GCA GGC CAG CGC GTG1423Arg Asn Val Thr Gln Glu Pro Leu Val Ala Al - #a Ala Gly Gln Arg Val# 760- GCG CAG CTG CTT CTG CTG GCA CGG CGC CTC GA - #G TGG CTT CCG TCC GGC1471Ala Gln Leu Leu Leu Leu Ala Arg Arg Leu Gl - #u Trp Leu Pro Ser Gly765 7 - #70 7 - #75 7 -#80- CTC AAC GAC CGC GAG CCC TTC CCA ACT AGC CC - #T CGC GCA GCA CCG CCC1519Leu Asn Asp Arg Glu Pro Phe Pro Thr Ser Pr - #o Arg Ala Ala Pro Pro# 795- GCC CCT GGG GCC CCG CGC CTG CGC TGG CGC CG - #C GTC GCC GAT CTC GCC1567Ala Pro Gly Ala Pro Arg Leu Arg Trp Arg Ar - #g Val Ala Asp Leu Ala# 810- GCG GCG GTG CCC CCC TCT GCG CGC GGG CCG CG - #C GGC TTT GGG TCC ACC1615Ala Ala Val Pro Pro Ser Ala Arg Gly Pro Ar - #g Gly Phe Gly Ser Thr# 825- GGG CTG TAAAACAAAG CACATTAAAG TACACCGACT CCACCACACA CG - #TGTTTTGC1671Gly Leu 830- GTATACTTAT TTTGCTTTTA TTGCACCGGG CTACGCCGCA AGCTGCAAAA CG - #GCGGGGGA1731- AGAAGCGGCG GCCGCCGCGC GCCCCGCGCG GCTAGGTGGT TTTGTGGCGG CC - #GCCTCTGC1791- AGGCGCCACC GGCGGTGCCG GAGACACGGC GACCGGCGCC GAGGCGGCCG GC - #TGCCGCGG1851- (2) INFORMATION FOR SEQ ID NO:12:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 325 amino (B) TYPE: amino acid (D) TOPOLOGY: linear- (ii) MOLECULE TYPE: protein- (xi) SEQUENCE DESCRIPTION: - # SEQ ID NO:12:- Met Ala Asn Ser Ala Ala Ala Thr Thr Ala Th - #r Met Ser Gly Asp Arg# 15- Gly Ile Leu Val Val Glu Leu Asn Ala Glu Al - #a Ala Pro Trp Arg Leu# 30- Glu Ser Cys Cys Glu Pro Asp Ser Leu Ala Le - #u Trp Gly Pro Ile Ala# 45- Pro Ala Ala Lys Arg Asp Glu Thr Ala Pro Se - #r Gly Ser Leu Leu Tyr# 60- Ser Arg Leu Ile Asn Leu Asn Met Lys Ala Al - #a Ala Pro Gly Gly Tyr# 80- Ala Ile Ile Met Ser Gln Met Arg Ser Gly As - #p Thr His Met Pro Arg# 95- Pro Pro Ala Val Ala Val Gly Ile Val Asp Se - #r Gly Tyr Ser Gly Ile# 110- Leu Arg Ala Ile Val Trp Ala Pro Glu Ser Al - #a Ala Ala Ala Pro Pro# 125- Ala Gly Leu Ala Leu Arg Leu Thr Leu Ala Ar - #g Leu Thr Thr Thr Leu# 140- Pro Arg Leu Ile Ala Val Asp Asp Asp Ala As - #n Ala Gly Thr Glu Ala145 1 - #50 1 - #55 1 -#60- Gly Val Glu Val Pro Phe Phe Ala Thr Phe Al - #a Pro Lys Arg Asp Glu# 175- Asp Ala Gly Tyr Asp Ile Ala Met Pro Tyr Th - #r Ala Val Leu Ala Pro# 190- Gly Glu Asn Leu His Val Arg Leu Pro Val Al - #a Tyr Ala Ala Asp Ala# 205- His Ala Ala Ala Pro Tyr Val Phe Gly Arg Se - #r Ser Cys Asn Leu Arg# 220- Gly Leu Ile Val Leu Pro Thr Ala Trp Pro Pr - #o Gly Glu Pro Cys Arg225 2 - #30 2 - #35 2 -#40- Phe Val Leu Arg Asn Val Thr Gln Glu Pro Le - #u Val Ala Ala Ala Gly# 255- Gln Arg Val Ala Gln Leu Leu Leu Leu Ala Ar - #g Arg Leu Glu Trp Leu# 270- Pro Ser Gly Leu Asn Asp Arg Glu Pro Phe Pr - #o Thr Ser Pro Arg Ala# 285- Ala Pro Pro Ala Pro Gly Ala Pro Arg Leu Ar - #g Trp Arg Arg Val Ala# 300- Asp Leu Ala Ala Ala Val Pro Pro Ser Ala Ar - #g Gly Pro Arg Gly Phe305 3 - #10 3 - #15 3 -#20- Gly Ser Thr Gly Leu 325- (2) INFORMATION FOR SEQ ID NO:13:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 700 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear- (ix) FEATURE: (A) NAME/KEY: CDS (B) LOCATION: 253..540#ID NO:13:(xi) SEQUENCE DESCRIPTION: SEQ- ACGGCCACGG CTGGTGGGCG GGGCATGTGT GTGTCACCCG AGCGCATTTG CG - #ACATTATA 60- ATGGCATATC CGCCGGGCGC GGCCGCCTTC ATGTTTAAAT TAATCAGCCG GC - #TATAAAGG 120- AGAGATCCCG ACGGGGCTGT TTCATCTCGC TTTGCTGCTG GCGCAATTGG GC - #CCCAGAGC 180- GCCAGCGAGT CGGGCTCACA GCAGCTTTCC AACCGCCAGG GGGCCGCCTC CG - #CGTTGAGC 240- TCTACGACGA GG ATG CCG CGG TCG CCG CTC ATC GTT - # GCG GTT GTG GCC 288 Met Pro Ar - #g Ser Pro Leu Ile Val Ala Val Val Ala# 335- GCC GCG CTG TTT GCC ATC GTG CGC GGC CGC GA - #C CCC CTG CTA GAC GCG 336Ala Ala Leu Phe Ala Ile Val Arg Gly Arg As - #p Pro Leu Leu Asp Ala# 350- ATG CGG CGC GAG GGG GCA ATG GAC TTT TGG AG - #C GCA GGC TGC TAC GCG 384Met Arg Arg Glu Gly Ala Met Asp Phe Trp Se - #r Ala Gly Cys Tyr Ala# 365- CGC GGG GTG CCG CTC TCG GAG CCA CCG CAG GC - #C CTG GTT GTT TTT TAC 432Arg Gly Val Pro Leu Ser Glu Pro Pro Gln Al - #a Leu Val Val Phe Tyr370 3 - #75 3 - #80 3 -#85- GTG GCC CTG ACC GCG GTA ATG GTC GCC GTG GC - #C CTG TAC GCG TAC GGG 480Val Ala Leu Thr Ala Val Met Val Ala Val Al - #a Leu Tyr Ala Tyr Gly# 400- CTT TGC TTT AGG CTC ATG GGC GCC AGC GGG CC - #C AAT AAA AAG GAG TCG 528Leu Cys Phe Arg Leu Met Gly Ala Ser Gly Pr - #o Asn Lys Lys Glu Ser# 415- CGG GGG CGG GGC TGATTGACCG CAACGCTGCG GAGTAACTTG TA - #TATAAAGC 580Arg Gly Arg Gly 420- TCGCGGTCCC GGCGACCGCT GCCTTTTTCG CACTCGGCCC GACCCGCTTT GA - #GCTGCACG 640- CCCGCCGGCC CGCCGACTCG CTTGCCATGG CCCGGTTCCA CAGGCCCTCC GA - #AGACGAGG 700- (2) INFORMATION FOR SEQ ID NO:14:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 96 amino (B) TYPE: amino acid (D) TOPOLOGY: linear- (ii) MOLECULE TYPE: protein- (xi) SEQUENCE DESCRIPTION: - # SEQ ID NO:14:- Met Pro Arg Ser Pro Leu Ile Val Ala Val Va - #l Ala Ala Ala Leu Phe# 15- Ala Ile Val Arg Gly Arg Asp Pro Leu Leu As - #p Ala Met Arg Arg Glu# 30- Gly Ala Met Asp Phe Trp Ser Ala Gly Cys Ty - #r Ala Arg Gly Val Pro# 45- Leu Ser Glu Pro Pro Gln Ala Leu Val Val Ph - #e Tyr Val Ala Leu Thr# 60- Ala Val Met Val Ala Val Ala Leu Tyr Ala Ty - #r Gly Leu Cys Phe Arg# 80- Leu Met Gly Ala Ser Gly Pro Asn Lys Lys Gl - #u Ser Arg Gly Arg Gly# 95- (2) INFORMATION FOR SEQ ID NO:15:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 349 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear- (ix) FEATURE: (A) NAME/KEY: CDS (B) LOCATION: 157..348#ID NO:15:(xi) SEQUENCE DESCRIPTION: SEQ- GGCCGGGCTG GGCGCGTGCG TACACGGCGG ATCTCGTTTG TGACGTTATC GG - #GTTTTTCG 60- CGCCCCGGGC GTGGATGCGC GTGTGCCTGG GGGGCACGTA GTATAAAACG AG - #CGGGGGGC 120#CAG AGC GAG 174GC CGCCCCACAC CGCGCC ATG GAC CGC# Met Asp Arg Gln Ser Glu# 100- CCT CCG CGC GCG CCC GCC TAC ACG GGC GGG CT - #G GTC TCC GGT CTT GTG 222Pro Pro Arg Ala Pro Ala Tyr Thr Gly Gly Le - #u Val Ser Gly Leu Val# 115- CTG TCG AAC ATC GAA GTG GCC TGC CAC CGC GC - #G CTG TTC AGC TTT TTC 270Leu Ser Asn Ile Glu Val Ala Cys His Arg Al - #a Leu Phe Ser Phe Phe# 130- CAG CAG GTG CGA TCG GAC GAC AAC GGC CTG TA - #C GCG GCC GCC TTT GAC 318Gln Gln Val Arg Ser Asp Asp Asn Gly Leu Ty - #r Ala Ala Ala Phe Asp135 1 - #40 1 - #45 1 -#50# 349 CG TAC TGC AAC ACG CTG AArg Leu Leu Gly Thr Tyr Cys Asn Thr Leu# 160- (2) INFORMATION FOR SEQ ID NO:16:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 64 amino (B) TYPE: amino acid (D) TOPOLOGY: linear- (ii) MOLECULE TYPE: protein- (xi) SEQUENCE DESCRIPTION: - # SEQ ID NO:16:- Met Asp Arg Gln Ser Glu Pro Pro Arg Ala Pr - #o Ala Tyr Thr Gly Gly# 15- Leu Val Ser Gly Leu Val Leu Ser Asn Ile Gl - #u Val Ala Cys His Arg# 30- Ala Leu Phe Ser Phe Phe Gln Gln Val Arg Se - #r Asp Asp Asn Gly Leu# 45- Tyr Ala Ala Ala Phe Asp Arg Leu Leu Gly Th - #r Tyr Cys Asn Thr Leu# 60- (2) INFORMATION FOR SEQ ID NO:17:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 1499 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear- (ix) FEATURE: (A) NAME/KEY: CDS (B) LOCATION: 390..1163#ID NO:17:(xi) SEQUENCE DESCRIPTION: SEQ- CGGTTGTGGC CGCCGCGCTG TTTGCCATCG TGCGCGGCCG CGACCCCCTG CT - #AGACGCGA 60- TGCGGCGCGA GGGGGCAATG GACTTTTGGA GCGCAGGCTG CTACGCGCGC GG - #GGTGCCGC 120- TCTCGGAGCC ACCGCAGGCC CTGGTTGTTT TTTACGTGGC CCTGACCGCG GT - #AATGGTCG 180- CCGTGGCCCT GTACGCGTAC GGGCTTTGCT TTAGGCTCAT GGGCGCCAGC GG - #GCCCAATA 240- AAAAGGAGTC GCGGGGGCGG GGCTGATTGA CCGCAACGCT GCGGAGTAAC TT - #GTATATAA 300- AGCTCGCGGT CCCGGCGACC GCTGCCTTTT TCGCACTCGG CCCGACCCGC TT - #TGAGCTGC 360- ACGCCCGCCG GCCCGCCGAC TCGCTTGCC ATG GCC CGG TTC CAC - # AGG CCC TCC 413# Met Ala A - #rg Phe His Arg Pro Ser# 70- GAA GAC GAG GAC GAT TAC GAG TAC AGC GAC CT - #T TGG GTG CGA GAA AAC 461Glu Asp Glu Asp Asp Tyr Glu Tyr Ser Asp Le - #u Trp Val Arg Glu Asn# 85- AGC CTC TAT GAC TAC GAG TCC GGC TCG GAT GA - #C CAC GTA TAC GAA GAG 509Ser Leu Tyr Asp Tyr Glu Ser Gly Ser Asp As - #p His Val Tyr Glu Glu# 100- CTG CGC GCC GCG ACG AGC GGA CCC GAG CCG AG - #C GGG CGG CGC GCT AGC 557Leu Arg Ala Ala Thr Ser Gly Pro Glu Pro Se - #r Gly Arg Arg Ala Ser105 1 - #10 1 - #15 1 -#20- GTC CGT GCG TGC GCC AGC GCT GCA GCC GTC CA - #G CCC GCC GCC CGC GGC 605Val Arg Ala Cys Ala Ser Ala Ala Ala Val Gl - #n Pro Ala Ala Arg Gly# 135- CGC GAT CGA GCC GCA GCC GCG GGG ACG ACC GT - #A GCT GCG CCC GCC GCC 653Arg Asp Arg Ala Ala Ala Ala Gly Thr Thr Va - #l Ala Ala Pro Ala Ala# 150- GCG CCG GCC CGC CGC TCG AGC AGC CGG GCG TC - #C TCG CGC CCG CCG CGA 701Ala Pro Ala Arg Arg Ser Ser Ser Arg Ala Se - #r Ser Arg Pro Pro Arg# 165- GCT GCC GCC GAC CCG CCC GTC CTC CGG CCA GC - #C ACG CGC GGG TCC TCC 749Ala Ala Ala Asp Pro Pro Val Leu Arg Pro Al - #a Thr Arg Gly Ser Ser# 180- GGC GGC GCC GGG GCA GTC GCC GTC GGT CCA CC - #T CGA CCT CGC GCG CCC 797Gly Gly Ala Gly Ala Val Ala Val Gly Pro Pr - #o Arg Pro Arg Ala Pro185 1 - #90 1 - #95 2 -#00- CCC GGT GCT AAT GCT GTT GCG TCT GGC CGG CC - #G CTG GCG TTC AGC GCG 845Pro Gly Ala Asn Ala Val Ala Ser Gly Arg Pr - #o Leu Ala Phe Ser Ala# 215- GCT CCG AAA ACG CCC AAG GCG CCC TGG TGT GG - #A CCG ACG CAC GCC TAC 893Ala Pro Lys Thr Pro Lys Ala Pro Trp Cys Gl - #y Pro Thr His Ala Tyr# 230- AAC CGA ACG ATC TTT TGC GAG GCC GTC GCG CT - #C GTG GCC GCC GAG TAC 941Asn Arg Thr Ile Phe Cys Glu Ala Val Ala Le - #u Val Ala Ala Glu Tyr# 245- GCC CGG CAG GCG GCT GCC AGC GTC TGG GAC TC - #G GAC CCC CCA AAG AGC 989Ala Arg Gln Ala Ala Ala Ser Val Trp Asp Se - #r Asp Pro Pro Lys Ser# 260- AAC GAG CGA TTG GAT CGC ATG TTG AAG TCG GC - #G GCA ATT CGC ATC CTC1037Asn Glu Arg Leu Asp Arg Met Leu Lys Ser Al - #a Ala Ile Arg Ile Leu265 2 - #70 2 - #75 2 -#80- GTG TGC GAG GGC TCC GGG CTT CTC GCC GCC GC - #G AAC GAC ATC TTG GCC1085Val Cys Glu Gly Ser Gly Leu Leu Ala Ala Al - #a Asn Asp Ile Leu Ala# 295- GCG CGG GCC CAG CGC CCC GCC GCG CGC GGG AG - #C ACA AGC GGC GGG GAA1133Ala Arg Ala Gln Arg Pro Ala Ala Arg Gly Se - #r Thr Ser Gly Gly Glu# 310- AGC CGC CTT CGC GGC GAG CGG GCC CGG CCG TA - #GCGCGAGC GGGAGGGCTT1183Ser Arg Leu Arg Gly Glu Arg Ala Arg Pro# 320- TTTCGACGCG CGCGGCTTAA GCAGCGCGCT GCTGTGCTAG TATGAAAATA AA - #CGCTTGTT1243- AATTAAACAC ACCAAGCCGA GTTGCGTTGT CTTTGGGATG AGCGGGCGCA TA - #AAAACCGC1303- GGGCCGCGCG CTCGCCAGTC AGTGCGGCGG TGCTGCGGCG GCAACCATGG AC - #CCGTACGA1363- CGCCATTGAA GCGTTCGATG ACTCCCTGCT CGGGTCGCCG CTCGCGGCGG GG - #CCGCTTTA1423- TGACGGCCCG TCCCCCGCGC GGTTCGCGCT GCCGCCCCCG CGCCCGGCTC CC - #CTGGCCGC1483# 1499- (2) INFORMATION FOR SEQ ID NO:18:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 258 amino (B) TYPE: amino acid (D) TOPOLOGY: linear- (ii) MOLECULE TYPE: protein- (xi) SEQUENCE DESCRIPTION: - # SEQ ID NO:18:- Met Ala Arg Phe His Arg Pro Ser Glu Asp Gl - #u Asp Asp Tyr Glu Tyr# 15- Ser Asp Leu Trp Val Arg Glu Asn Ser Leu Ty - #r Asp Tyr Glu Ser Gly# 30- Ser Asp Asp His Val Tyr Glu Glu Leu Arg Al - #a Ala Thr Ser Gly Pro# 45- Glu Pro Ser Gly Arg Arg Ala Ser Val Arg Al - #a Cys Ala Ser Ala Ala# 60- Ala Val Gln Pro Ala Ala Arg Gly Arg Asp Ar - #g Ala Ala Ala Ala Gly# 80- Thr Thr Val Ala Ala Pro Ala Ala Ala Pro Al - #a Arg Arg Ser Ser Ser# 95- Arg Ala Ser Ser Arg Pro Pro Arg Ala Ala Al - #a Asp Pro Pro Val Leu# 110- Arg Pro Ala Thr Arg Gly Ser Ser Gly Gly Al - #a Gly Ala Val Ala Val# 125- Gly Pro Pro Arg Pro Arg Ala Pro Pro Gly Al - #a Asn Ala Val Ala Ser# 140- Gly Arg Pro Leu Ala Phe Ser Ala Ala Pro Ly - #s Thr Pro Lys Ala Pro145 1 - #50 1 - #55 1 -#60- Trp Cys Gly Pro Thr His Ala Tyr Asn Arg Th - #r Ile Phe Cys Glu Ala# 175- Val Ala Leu Val Ala Ala Glu Tyr Ala Arg Gl - #n Ala Ala Ala Ser Val# 190- Trp Asp Ser Asp Pro Pro Lys Ser Asn Glu Ar - #g Leu Asp Arg Met Leu# 205- Lys Ser Ala Ala Ile Arg Ile Leu Val Cys Gl - #u Gly Ser Gly Leu Leu# 220- Ala Ala Ala Asn Asp Ile Leu Ala Ala Arg Al - #a Gln Arg Pro Ala Ala225 2 - #30 2 - #35 2 -#40- Arg Gly Ser Thr Ser Gly Gly Glu Ser Arg Le - #u Arg Gly Glu Arg Ala# 255- Arg Pro- (2) INFORMATION FOR SEQ ID NO:19:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 258 amino (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:19:(xi) SEQUENCE DESCRIPTION: SEQ- Met Ala Arg Phe His Arg Pro Ser - # Glu Asp Glu Asp Asp Tyr GluTyr# 15- Ser Asp Leu Trp Val Arg Glu Asn - # Ser Leu Tyr Asp Tyr Glu SerGly# 30- Ser Asp Asp His Val Tyr Glu Glu - # Leu Arg Ala Ala Thr Ser GlyPro# 45- Glu Pro Ser Gly Arg Arg Ala Ser - # Val Arg Ala Cys Ala Ser AlaAla# 60- Ala Val Gln Pro Ala Ala Arg Gly - # Arg Asp Arg Ala Ala Ala AlaGly# 80- Thr Thr Val Ala Ala Pro Ala Ala - # Ala Pro Ala Arg Arg Ser SerSer# 95- Arg Ala Ser Ser Arg Pro Pro Arg - # Ala Ala Ala Asp Pro Pro ValLeu# 110- Arg Pro Ala Thr Arg Gly Ser Ser - # Gly Gly Ala Gly Ala Val AlaVal# 125- Gly Pro Pro Arg Pro Arg Ala Pro - # Pro Gly Ala Asn Ala Val AlaSer# 140- Gly Arg Pro Leu Ala Phe Ser Ala - # Ala Pro Lys Thr Pro Lys AlaPro# 160- Trp Cys Gly Pro Thr His Ala Tyr - # Asn Arg Thr Ile Phe Cys GluAla# 175- Val Ala Leu Val Ala Ala Glu Tyr - # Ala Arg Gln Ala Ala Ala SerVal# 190- Trp Asp Ser Asp Pro Pro Lys Ser - # Asn Glu Arg Leu Asp Arg MetLeu# 205- Lys Ser Ala Ala Ile Arg Ile Leu - # Val Cys Glu Gly Ser Gly LeuLeu# 220- Ala Ala Ala Asn Asp Ile Leu Ala - # Ala Arg Ala Gln Arg Pro AlaAla# 240- Arg Gly Ser Thr Ser Gly Gly Glu - # Ser Arg Leu Arg Gly Glu ArgAla# 255- Arg Pro- (2) INFORMATION FOR SEQ ID NO:20:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 302 amino (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:20:(xi) SEQUENCE DESCRIPTION: SEQ- Met Ala Ser Ser Asp Gly Asp Arg - # Leu Cys Arg Ser Asn Ala ValArg# 15- Arg Lys Thr Thr Pro Ser Tyr Ser - # Gly Gln Tyr Arg Thr Ala ArgArg# 30- Ser Val Val Val Gly Pro Pro Asp - # Asp Ser Asp Asp Ser Leu GlyTyr# 45- Ile Thr Thr Val Gly Ala Asp Ser - # Pro Ser Pro Val Tyr Ala AspLeu# 60- Tyr Phe Glu His Lys Asn Thr Thr - # Pro Arg Val His Gln Pro AsnAsp# 80- Ser Ser Gly Ser Glu Asp Asp Phe - # Glu Asp Ile Asp Glu Val ValAla# 95- Ala Phe Arg Glu Ala Arg Leu Arg - # His Glu Leu Val Glu Asp AlaVal# 110- Tyr Glu Asn Pro Leu Ser Val Glu - # Lys Pro Ser Arg Ser Phe ThrLys# 125- Asn Ala Ala Val Lys Pro Lys Leu - # Glu Asp Ser Pro Lys Arg AlaPro# 140- Pro Gly Ala Gly Ala Ile Ala Ser - # Gly Arg Pro Ile Ser Phe SerThr# 160- Ala Pro Lys Thr Ala Thr Ser Ser - # Trp Cys Gly Pro Thr Pro SerTyr# 175- Asn Lys Arg Val Phe Cys Glu Ala - # Val Arg Arg Val Ala Ala MetGln# 190- Ala Gln Lys Ala Ala Glu Ala Ala - # Trp Asn Ser Asn Pro Pro ArgAsn# 205- Asn Ala Glu Leu Asp Arg Leu Leu - # Thr Gly Ala Val Ile Arg IleThr# 220- Val His Glu Gly Leu Asn Leu Ile - # Gln Ala Ala Asn Glu Ala AspLeu# 240- Gly Glu Gly Ala Ser Val Ser Lys - # Arg Gly His Asn Arg Lys ThrGly# 255- Asp Leu Gln Gly Gly Met Gly Asn - # Glu Pro Met Tyr Ala Gln ValArg# 270- Lys Pro Lys Ser Arg Thr Asp Thr - # Gln Thr Thr Gly Arg Ile ThrAsn# 285- Arg Ser Arg Ala Arg Ser Ala Ser - # Arg Thr Asp Thr Arg Lys# 300- (2) INFORMATION FOR SEQ ID NO:21:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 301 amino (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear#ID NO:21:(xi) SEQUENCE DESCRIPTION: SEQ- Met Thr Ser Arg Arg Ser Val Lys - # Ser Gly Pro Arg Glu Val ProArg# 15- Asp Glu Tyr Glu Asp Leu Tyr Tyr - # Thr Pro Ser Ser Gly Met AlaSer# 30- Pro Asp Ser Pro Pro Asp Thr Ser - # Arg Arg Gly Ala Leu Gln ThrArg# 45- Ser Arg Gln Arg Gly Glu Val Arg - # Phe Val Gln Tyr Asp Glu SerAsp# 60- Tyr Ala Leu Tyr Gly Gly Ser Ser - # Ser Glu Asp Asp Glu His ProGlu# 80- Val Pro Arg Thr Arg Arg Pro Val - # Ser Gly Ala Val Leu Ser GlyPro# 95- Gly Pro Ala Arg Ala Pro Pro Pro - # Pro Ala Gly Ser Gly Gly AlaGly# 110- Arg Thr Pro Thr Thr Ala Pro Arg - # Ala Pro Arg Thr Gln Arg ValAla# 125- Thr Lys Ala Pro Ala Ala Pro Ala - # Ala Glu Thr Thr Arg Gly ArgLys# 140- Ser Ala Gln Pro Glu Ser Ala Ala - # Leu Pro Asp Ala Pro Ala SerThr# 160- Ala Pro Thr Arg Ser Lys Thr Pro - # Ala Gln Gly Leu Ala Arg LysLeu# 175- His Phe Ser Thr Ala Pro Pro Asn - # Pro Asp Ala Pro Trp Thr ProArg# 190- Val Ala Gly Phe Asn Lys Arg Val - # Phe Cys Ala Ala Val Gly ArgLeu# 205- Ala Ala Met His Ala Arg Met Ala - # Ala Val Gln Leu Trp Asp MetSer# 220- Arg Pro Arg Thr Asp Glu Asp Leu - # Asn Glu Leu Leu Gly Ile ThrThr# 240- Ile Arg Val Thr Val Cys Glu Gly - # Lys Asn Leu Leu Gln Arg AlaAsn# 255- Glu Leu Val Asn Pro Asp Val Val - # Gln Asp Val Asp Ala Ala ThrAla# 270- Thr Arg Gly Arg Ser Ala Ala Ser - # Arg Pro Thr Glu Arg Pro ArgAla# 285- Pro Ala Arg Ser Ala Ser Arg Pro - # Arg Arg Pro Val Glu# 300__________________________________________________________________________

Number	Name	Date
5128129	Kit et al.	Jul 1992
5151267	Babiuk et al.	Sep 1992
5206163	Renard et al.	Apr 1993
5601816	Kit et al.	Feb 1997

Recombinant bovine herpesvirus type 1 vaccines

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