Patent Application
20170107248
The present invention relates generally to a novel method of introducing modifying groups to a protein or polypeptide. In particular, the present invention relates to selective derivation of the amino functionality at the N-terminus of the protein or the polypeptide using the presence of a neighboring histidine amino acid to increase the reactivity of the N-terminal amino functionality.
It is well-known that the properties and characteristics of proteins or peptides may be modified by conjugating groups to the protein or peptide. Generally, such conjugation generally requires some functional group in the protein to react with another functional group in a conjugating group. Amino groups, such as the N-terminal amino group or the ε-amino group in lysine residues have been used in combination with suitable acylating reagents for this purpose. It is often desired or necessary to control the conjugation reaction, such as where the conjugating compounds are attached to the protein and to control how many conjugating groups are attached. This is often referred to as specificity or selectivity.
Site-specific modification of proteins or peptides is a longstanding challenge in the pharmaceutical and biotechnology arts. The classic methods oftentimes lead to non-specific labeling (e.g. NHS labeling) or require engineering (e.g. maleimide Cys labeling or unnatural amino acids). In addition, the repertoire of selective chemical reactions, however, is very limited. One alternative is, by recombinant methods, to introduce special unnatural amino acids having a unique reactivity and then exploit this reactivity in the further derivatization. Another alternative is the use of enzymes which recognize structural and functional features of the protein to be modified.
Despite recombinant methods, the selective derivatization of proteins/peptides remains a very difficult task. Thus, there is a need in the art for a general method of selectively derivatizing amino acid residues such as at the N-terminus of a protein or peptide.
The present invention relates to a method for modifying a target protein or a target peptide at the amino functionality of the N-terminal amino acid comprising the steps of:
The present invention also pertains to various methods for modifying the target protein or target peptide so that the resulting protein or peptide contains a histidine amino acid at the position adjacent to the N-terminus amino acid. Such methods will be described in more details herein.
In another embodiment, the invention pertains to a method for modifying a target protein or a target peptide at the amino functionality of the N-terminal amino acid comprising the steps of:
HO—C(O)-(L1)n—R1 wherein:
L1 is a linker;
R1 is a moiety comprising a reactive group that facilitates covalent attachment to a biointeractive agent or to an analytical agent or R1 is a biointeractive agent or an analytical agent,
n is 0 or 1;
at a pH lower than 6, to form a modified protein or peptide.
In another embodiment the invention pertains to the selective method for modifying a target protein or a target peptide as described supra using an acylating agent of Formula:
wherein:
L1 is a linker;
R1 is a moiety comprising a reactive group that facilitates covalent attachment to a biointeractive agent or to an analytical agent or R1 is a biointeractive agent or an analytical agent,
n is 0 or 1;
In a further aspect of preceding embodiments, the invention pertains to the selective method for modifying a protein or a peptide at the N-terminus amino group as described herein, wherein the biointeractive or analytical agent is selected from biotin, fluorophore, toxin, chelator, a half-life extending moiety (such as for example albumin binding moiety, Fc variant or native Fc), an imaging reagent and a peptide.
In another embodiment, the invention pertains to the selective method for modifying a protein or peptide at the N-terminus amino group, as described herein, wherein the R1 is a moiety comprising a reactive group that facilitates covalent attachment to a biointeractive or analytical agent. Examples of reactive groups are acyl, ester or mixed anhydride, alkyne, tetrazine, maleimide, imidate, carboxy or more generally groups capable of forming a covalent bond with functionalities such as amino group, azide group, alkene group, thiol group or hydrazine, hydroxylamine groups present on the biointeractive or analytical agent. In one particular aspect of this embodiment, the method of the invention further comprises a step of reacting a biointeractive agent or an analytical agent with the reactive group present in the acylating agent, wherein the biointeractive or bionalytical agent is reacted via a functional group optionally via a linker L2. Linkers will be defined in more details herein.
In one embodiment, the target protein or target peptide is selected from a Growth Differentiation Factor 15 (GDF15) protein, homologs, variants, fragments and other modified form thereof, native Fc, Fc variant or APJ agonist peptide.
These and other aspects of the invention will be elucidated in the following detailed description of the invention.
For purposes of interpreting this specification, the following definitions will apply unless specified otherwise and whenever appropriate, terms used in the singular will also include the plural and vice versa.
All references made to patents, patent publications, and other literature are made for their incorporation into this disclosure to the extent permissible by law.
The present invention addresses the aforementioned needs by providing a method of introducing modifying compounds to a target protein or peptide in a selective manner.
It must be noted that as used herein and in the appended claims, the singular forms “a”, “an” and “the” include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to “the conjugate” includes reference to one or more conjugates; reference to “the polypeptide” includes reference to one or more polypeptides; and so forth.
The term alkyl refers to a fully saturated branched or unbranched (or straight chain or linear) hydrocarbon moiety, comprising 1 to 30 carbon atoms. Preferably the alkyl comprises 5 to 20 carbon atoms, and more preferably 10 to 15 carbon atoms. C10-15alkyl refers to an alkyl chain comprising 10 to 15 carbons.
The term “alkenyl” refers to a branched or unbranched hydrocarbon having at least one carbon-carbon double bond. The term “C2-30-alkynyl” refers to a hydrocarbon having two to seven carbon atoms and comprising at least one carbon-carbon triple
The term “alkynyl” refers to a branched or unbranched hydrocarbon having at least one carbon-carbon triple bond. The term “C2-30-alkynyl” refers to a hydrocarbon having two to seven carbon atoms and comprising at least one carbon-carbon triple bond.
The term aryl refers to monocyclic or bicyclic aromatic hydrocarbon groups having 6-10 carbon atoms in the ring portion. Representative examples of aryl are phenyl or naphthyl.
The term heteroaryl includes monocyclic or bicyclic heteroaryl, containing from 5-10 ring members selected from carbon atoms and 1 to 5 heteroatoms, and each heteroatoms is independently selected from O, N or S wherein S and N may be oxidized to various oxidation states. For bicyclic heteroaryl system, the system is fully aromatic (i.e. all rings are aromatic).
The term cycloalkyl refers to saturated or unsaturated but non-aromatic monocyclic, bicyclic or tricyclic hydrocarbon groups of 3-12 carbon atoms, preferably 3-8, or 3-7 carbon atoms. For bicyclic, and tricyclic cycloalkyl system, all rings are non-aromatic. For example, cycloalkyl encompasses cycloalkenyl and cycloalkynyl. The term “cycloalkenyl” refers to a bicyclic or tricyclic hydrocarbon group of 3-12 carbon atoms, having at least one carbon-carbon double bond. The term “cycloalkynyl” refers to a bicyclic or tricyclic hydrocarbon group of 3-12 carbon atoms, having at least one carbon-carbon triple bond.
The term heterocyclyl refers to a saturated or unsaturated non-aromatic (partially unsaturated but non-aromatic) monocyclic, bicyclic or tricyclic ring system which contains at least one heteroatom selected from O, S and N, where the N and S can also optionally be oxidized to various oxidation states. In one embodiment, heterocyclyl moiety represents a saturated monocyclic ring containing from 5-7 ring atoms and optionally containing a further heteroatom, selected from O, S or N. The heterocyclic ring may be substituted with alkyl, halo, oxo, alkoxy, haloalkyl, haloalkoxy. In other embodiment, heterocyclyl is di- or tricyclic. For polycyclic system, some ring may be aromatic and fused to saturated or partially saturated ring or rings. The overall fused system is not fully aromatic. For example, a heterocyclic ring system can be an aromatic heteroaryl ring fused with saturated or partially saturated cycloalkyl ring system.
The term “conjugate” is intended to refer to the entity formed as a result of a covalent attachment of target protein/peptide to a biointeractive/analytical agent, optionally via a linker. The Term “conjugation” is intended to refer the step of covalently attaching the target protein/peptide to a biointeractive/analytical agent, optionally via a linker.
As used herein, the term “polypeptide” refers to a polymer of amino acid residues linked by peptide bonds, whether produced naturally or synthetically. Polypeptides of less than about 10 amino acid residues are commonly referred to as “peptides.” The term “peptide” is intended to indicate a sequence of two or more amino acids linked by peptide bonds, wherein said amino acids may be natural or unnatural. The term encompasses the terms polypeptides and proteins, which may consist of two or more peptides held together by covalent interactions, such as for instance cysteine bridges, or non-covalent interactions. The art-recognized three letter or one letter abbreviations are used to represent amino acid residues that constitute the peptides and polypeptides of the invention. Except when preceded with “D”, the amino acid is an L-amino acid. When the one letter abbreviation is a capital letter, it refers to the D-amino acid. When the one letter abbreviation is a lower case letter, it refers to the L-amino acid. Groups or strings or amino acid abbreviations are used to represent peptides. Peptides are indicated with the N-terminus on the left and the sequence is written from the N-terminus to the C-terminus.
Peptides of the invention contain non-natural amino acids (i.e., compounds that do not occur in nature) and other amino acid analogs as are known in the art may alternatively be employed.
Certain non-natural amino acids can be introduced by the technology described in Deiters et al., J Am Chem Soc 125:11782-11783, 2003; Wang and Schultz, Science 301:964-967, 2003; Wang et al., Science 292:498-500, 2001; Zhang et al., Science 303:371-373, 2004 or in U.S. Pat. No. 7,083,970. Briefly, some of these expression systems involve site-directed mutagenesis to introduce a nonsense codon, such as an amber TAG, into the open reading frame encoding a polypeptide of the invention. Such expression vectors are then introduced into a host that can utilize a tRNA specific for the introduced nonsense codon and charged with the non-natural amino acid of choice. Particular non-natural amino acids that are beneficial for purpose of conjugating moieties to the polypeptides of the invention include those with acetylene and azido side chains.
A “protein” is a macromolecule comprising one or more polypeptide chains. A protein may also comprise non-peptidic components, such as carbohydrate groups. Carbohydrates and other nonpeptidic substituents may be added to a protein by the cell in which the protein is produced, and will vary with the type of cell. Proteins are defined herein in terms of their amino acid backbone structures; substituents such as carbohydrate groups are generally not specified, but may be present nonetheless. A protein or polypeptide encoded by a non-host DNA molecule is a “heterologous” protein or polypeptide.
An “isolated polypeptide or isolated protein” is a polypeptide or protein (for example GDF15) that is essentially free from cellular components, such as carbohydrate, lipid, or other proteinaceous impurities associated with the polypeptide in nature. Typically, a preparation of isolated polypeptide or protein contains the polypeptide or protein in a highly purified form, i.e., at least about 80% pure, at least about 90% pure, at least about 95% pure, greater than 95% pure, such as 96%, 97%, or 98% or more pure, or greater than 99% pure. One way to show that a particular protein preparation contains an isolated polypeptide or protein is by the appearance of a single band following sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis of the protein preparation and Coomassie Brilliant Blue staining of the gel. However, the term “isolated” does not exclude the presence of the same polypeptide or protein in alternative physical forms, such as dimers or alternatively glycosylated or derivatized forms. Preferably, the isolated polypeptide is substantially free from any other contaminating polypeptides or other contaminants that are found in its natural environment that would interfere with its therapeutic, diagnostic, prophylactic or research use.
One of ordinary skill in the art will appreciate that various amino acid substitutions, e.g, conservative amino acid substitutions, may be made in the sequence of any of the polypeptide or protein described herein, without necessarily decreasing its activity. As used herein, “amino acid commonly used as a substitute thereof” includes conservative substitutions (i.e., substitutions with amino acids of comparable chemical characteristics). For the purposes of conservative substitution, the non-polar (hydrophobic) amino acids include alanine, leucine, isoleucine, valine, glycine, proline, phenylalanine, tryptophan and methionine. The polar (hydrophilic), neutral amino acids include serine, threonine, cysteine, tyrosine, asparagine, and glutamine. The positively charged (basic) amino acids include arginine, lysine and histidine. The negatively charged (acidic) amino acids include aspartic acid and glutamic acid. Examples of amino acid substitutions include substituting an L-amino acid for its corresponding D-amino acid, substituting cysteine for homocysteine or other non-natural amino acids having a thiol-containing side chain, substituting a lysine for homolysine, diaminobutyric acid, diaminopropionic acid, ornithine or other non-natural amino acids having an amino containing side chain, or substituting an alanine for norvaline or the like.
The term “amino acid,” as used herein, refers to naturally occurring amino acids, unnatural amino acids, amino acid analogues and amino acid mimetics that function in a manner similar to the naturally occurring amino acids, all in their D and L stereoisomers if their structure allows such stereoisomeric forms. Amino acids are referred to herein by either their name, their commonly known three letter symbols or by the one-letter symbols recommended by the IUPAC-IUB Biochemical Nomenclature Commission.
The term “naturally occurring” refers to materials which are found in nature and are not manipulated by man. Similarly, “non-naturally occurring,” “un-natural,” and the like, as used herein, refers to a material that is not found in nature or that has been structurally modified or synthesized by man. When used in connection with amino acids, the term “naturally occurring” refers to the 20 conventional amino acids (i.e., alanine (A or Ala), cysteine (C or Cys), aspartic acid (D or Asp), glutamic acid (E or Glu), phenylalanine (F or Phe), glycine (G or Gly), histidine (H or His), isoleucine (I or Ile), lysine (K or Lys), leucine (L or Leu), methionine (M or Met), asparagine (N or Asn), proline (P or Pro), glutamine (Q or Gln), arginine (R or Arg), serine (S or Ser), threonine (T or Thr), valine (V or Val), tryptophan (W or Trp), and tyrosine (Y or Tyr)).
The terms “non-natural amino acid” and “unnatural amino acid,” as used herein, are interchangeably intended to represent amino acid structures that cannot be generated biosynthetically in any organism using unmodified or modified genes from any organism, whether the same or different. The terms refer to an amino acid residue that is not present in the naturally occurring (wild-type) protein sequence or the sequences of the present invention. These include, but are not limited to, modified amino acids and/or amino acid analogues that are not one of the 20 naturally occurring amino acids, selenocysteine, pyrrolysine (Pyl), or pyrroline-carboxy-lysine (Pcl, e.g., as described in PCT patent publication WO2010/48582). Such non-natural amino acid residues can be introduced by substitution of naturally occurring amino acids, and/or by insertion of non-natural amino acids into the naturally occurring (wild-type) protein sequence or the sequences of the invention. The non-natural amino acid residue also can be incorporated such that a desired functionality is imparted to the molecule, for example, the ability to link a functional moiety (e.g., PEG). When used in connection with amino acids, the symbol “U” shall mean “non-natural amino acid” and “unnatural amino acid,” as used herein.
The term “analogue” as used herein referring to a polypeptide or protein means a modified peptide or protein wherein one or more amino acid residues of the peptide/protein have been substituted by other amino acid residues and/or wherein one or more amino acid residues have been deleted from the peptide/protein and/or wherein one or more amino acid residues have been added the peptide/protein. Such addition or deletion of amino acid residues can take place at the N-terminal of the peptide and/or at the C-terminal of the peptide.
The term “APJ” (also referred to as “apelin receptor,” “angiotensin-like-1 receptor,” “angiotensin II-like-1 receptor,” and the like) indicates a 380 residue, 7 transmembrane domain, Gi coupled receptor whose gene is localized on the long arm of chromosome 11 in humans (NCBI Reference Sequence: NP_005152.1, and encoded by NCBI Reference Sequence: NM_005161). APJ was first cloned in 1993 from genomic human DNA using degenerate oligonucleotide primers (O'Dowd et al. Gene, 136:355-60, 1993) and shares significant homology with angiotensin II receptor type 1. Despite this homology however, angiotensin II does not bind APJ. Although orphan for many years, the endogenous ligand has been isolated and named apelin (Tatemoto et al., Biochem Biophys Res Commun 251, 471-6 (1998)).
The term “APJ agonist” includes apelin polypeptides: Apelin indicates a 77 residue preprotein (NCBI Reference Sequence: NP_0059109.3, and encoded by NCBI Reference Sequence: NM_017413.3), which gets processed into biologically active forms of apelin peptides, such as apelin-36, apelin-17, apelin-16, apelin-13, apelin-12. The full length mature peptide, referred to as “apelin-36,” comprises 36 amino acids, but the most potent isoform is the pyroglutamated form of a 13mer of apelin (apelin-13), referred to as “Pyr-1-apelin-13 or Pyr′-apelin-13” Different apelin forms are described, for instance, in U.S. Pat. No. 6,492,324B1. Apelin peptide agonists are also described in patent application numbers WO 2013/111110, WO 2014/081702, WO 2015/013168, WO 2015/013165, WO 2015/013167 and WO 2015/013169 which are incorporated by reference herein.
The terms “GDF15 polypeptide” and “GDF15 protein” are used interchangeably and mean a naturally-occurring wild-type polypeptide expressed in a mammal, such as a human or a mouse. For purposes of this disclosure, the term “GDF15 protein” can be used interchangeably to refer to any full-length GDF15 polypeptide, which consists of 308 amino acid residues; (NCI Ref. Seq. NP_004855.2) containing a 20 amino acid signal peptide, a 167 amino acid pro-domain, and a mature domain of 112 amino acids which is excised from the prodomain by furin-like proteases. A 308-amino acid GDF15 polypeptide is referred to as “full-length” GDF15 polypeptide; a 112 amino acids GDF15 polypeptide (e.g. amino acids 197-308) is a “mature” GDF15 polypeptide. The mature GDF15 peptide contains the seven conserved cysteine residues required for the formation of the cysteine knot motif (having three intrachain disulfide bonds) and the single interchain disulfide bond that are typical for TGF˜superfamily members. The mature GDF15 peptide contains two additional cysteine residues that form a fourth intrachain disulfide bond. Therefore, biologically active GDF15 is a homodimer of the mature peptide covalently linked by one interchain disulfide bond. A GDF15 protein or polypeptide therefore also includes multimer, more particularly dimer of the protein.
The term “GDF15 mutant polypeptide” encompasses a GDF15 polypeptide in which a naturally occurring GDF15 polypeptide sequence has been modified. Such modifications include, but are not limited to, one or more amino acid substitutions, including substitutions with non-naturally occurring amino acids non-naturally-occurring amino acid analogs and amino acid mimetics.
In one aspect, the term “GDF15 mutant protein” refers to a GDF15 protein sequence (e.g., SEQ ID NO 1-8) in which at least one residue normally found at a given position of a native GDF15 polypeptide is deleted or is replaced by a residue not normally found at that position in the native GDF15 sequence. In some cases it will be desirable to replace a single residue normally found at a given position of a native GDF15 polypeptide with more than one residue that is not normally found at the position; in still other cases it may be desirable to maintain the native GDF15 polypeptide sequence and insert one or more residues at a given position in the protein; in still other cases it may be desirable to delete a given residue entirely; all of these constructs are encompassed by the term “GDF 15 mutant protein. The present invention also encompasses nucleic acid molecules encoding such GDF15 mutant polypeptide sequences.
In various embodiments, a GDF15 mutant protein comprises an amino acid sequence that is at least about 85 percent identical to a naturally-occurring GDF15 protein. In other embodiments, a GDF15 polypeptide comprises an amino acid sequence that is at least about 90 percent, or about 95, 96, 97, 98, or 99 percent identical to a naturally-occurring GDF15 polypeptide amino acid sequence. Such GDF15 mutant polypeptides preferably, but need not, possess at least one activity of a wild-type GDF15 mutant polypeptide, such as the ability to lower blood glucose, insulin, triglyceride, or cholesterol levels; the ability to reduce body weight; or the ability to improve glucose tolerance, energy expenditure, or insulin sensitivity.
Although the GDF15 polypeptides and GDF15 mutant polypeptides, and the constructs comprising such polypeptides are primarily disclosed in terms of human GDF15, the invention is not so limited and extends to GDF15 polypeptides and GDF15 mutant polypeptides and the constructs comprising such polypeptides where the GDF15 polypeptides and GDF15 mutant polypeptides are derived from other species (e.g., cynomolgous monkeys, mice and rats). In some instances, a GDF15 polypeptide or a GDF15 mutant polypeptide can be used to treat or ameliorate a metabolic disorder in a subject in a mature form of a GDF15 mutant polypeptide that is derived from the same species as the subject.
A GDF15 mutant polypeptide is preferably biologically active. In various respective embodiments, a GDF15 polypeptide or a GDF15 mutant polypeptide has a biological activity that is equivalent to, greater to or less than that of the naturally occurring form of the mature GDF15 protein. Examples of biological activities include the ability to lower blood glucose, insulin, triglyceride, or cholesterol levels; the ability to reduce body weight; or the ability to improve glucose tolerance, lipid tolerance, or insulin sensitivity; the ability to lower urine glucose and protein excretion.
As used herein in the context of the structure of a polypeptide or protein, the term “N-terminus” (or “amino terminus”) and “C-terminus” (or “carboxyl terminus”) refer to the extreme amino and carboxyl ends of the polypeptide, respectively. The term “N-terminal amino acid” refers to the last amino acid present at the N-terminus. The term “amino acid adjacent to the N-terminus amino acid” refer to the amino acid present at the position adjacent to the last amino acid of the N-terminus. (i.e. the second amino acid present in the protein or peptide counting from the N-terminus).
The term half-life extending moiety refers to for example a polymer, such as polyethylene glycol (PEG), fatty acids, a cholesterol group, a carbohydrate or oligosaccharide; or any natural or synthetic protein, polypeptide or peptide that binds to a salvage receptor. The half-life extending moiety can bind to plasma protein (e.g. albumin and immunoglobulin) with long serum half-lives. For example, the half-life extending moiety is an IgG constant domain or fragment thereof (e.g., the Fc region), Human Serum Albumin (HSA), or albumin-binding polypeptides. In other embodiments, the half-life extending moiety is an albumin binding residue or other plasma protein binding residue. An “Albumin binding residue” as used herein means a residue which binds non-covalently to human serum albumin. In one embodiment the albumin binding residue is a lipophilic residue. In another embodiment, the albumin binding residue is negatively charged at physiological pH. A binding residue typically comprises a carboxylic acid which can be negatively charged. In another embodiment, the half-life extending moiety is a fatty acid, which can be defined as a C6-70alkyl, a C6-70alkenyl or a C6-70alkynyl chain, each of which is substituted with at least one carboxylic acid (for example 1, 2, 3 or 4 CO2H) and optionally further substituted with hydroxyl group. Examples of fatty acid are defined by Formulae A1, A2 and A3. In other embodiment, the half-life extending moiety is a small molecule which binds non-covalently to a plasma protein (e.g. Albumin). Such small molecules are for examples, Warfarin, aspirin, benzodiazepine derivatives (e.g. diazepam), indoles, cardenolides (e.g. digitoxin) and biliary acids.
Half-life extending moieties include Albumin, which refers to the most abundant protein in the blood plasma having a molecular weight of approximately between 65 and 67 kilodaltons in its monomeric form, depending on species of origin. The term “albumin” is used interchangeably with “serum albumin” and is not meant to define the source of albumin which forms a conjugate with the modified peptides of the invention. Thus, the term “albumin” as used herein may refer either to albumin purified from a natural source such as blood or serous fluis, or it may refer to chemicaly synthetisized or recombinantly produced albumin.
Half-life extending moieties include “native Fc” which refers to molecule or sequence comprising the sequence of a non-antigen-binding fragment resulting from digestion of whole antibody or produced by other means, whether in monomeric or multimeric form, and can contain the hinge region. The original immunoglobulin source of the native Fc is preferably of human origin and can be any of the immunoglobulins, although IgG1 and IgG2 are preferred. Native Fc molecules are made up of monomeric polypeptides that can be linked into dimeric or multimeric forms by covalent (i.e., disulfide bonds) and non-covalent association. The number of intermolecular disulfide bonds between monomeric subunits of native Fc molecules ranges from 1 to 4 depending on class (e.g., IgG, IgA, and IgE) or subclass (e.g., IgG1, IgG2, IgG3, IgA1, and IgGA2). One example of a native Fc is a disulfide-bonded dimer resulting from papain digestion of an IgG (see Ellison et al., 1982, Nucleic Acids Res. 10: 4071-9). The term “native Fc” as used herein is generic to the monomeric, dimeric, and multimeric forms.
Half-life extending moieties include “Fc variant” which refers to a molecule or sequence that is modified from a native Fc but still comprises a binding site for the salvage receptor, FcRn (neonatal Fc receptor). International Publication Nos. WO 97/34631 and WO 96/32478 describe exemplary Fc variants, as well as interaction with the salvage receptor, and are hereby incorporated by reference. Thus, the term “Fc variant” can comprise a molecule or sequence that is humanized from a non-human native Fc. Furthermore, a native Fc comprises regions that can be removed because they provide structural features or biological activity that are not required for the bioconjugate of the invention. Thus, the term “Fc variant” comprises a molecule or sequence that lacks one or more native Fc sites or residues, or in which one or more Fc sites or residues has be modified, that affect or are involved in: (1) disulfide bond formation, (2) incompatibility with a selected host cell, (3) N-terminal heterogeneity upon expression in a selected host cell, (4) glycosylation, (5) interaction with complement, (6) binding to an Fc receptor other than a salvage receptor, or (7) antibody-dependent cellular cytotoxicity (ADCC). Fc variants are described in further detail hereinafter.
Half-time extending moieties refer to “Fc domain” which encompasses native Fc and Fc variants and sequences as defined above. As with Fc variants and native Fc molecules, the term “Fc domain” includes molecules in monomeric or multimeric form, whether digested from whole antibody or produced by other means. In some embodiments of the present invention, an Fc domain can be conjugated to a polypeptide of Formula I′ or anyone of Formulae I-IX via, for example, a covalent bond between the Fc domain and the peptide sequence. Such Fc proteins can form multimers via the association of the Fc domains and both these Fc proteins and their multimers are an aspect of the present invention.
Half-life extending moieties include “modified Fc fragment”, which shall mean an Fc fragment of an antibody comprising a modified sequence. The Fc fragment is a portion of an antibody comprising the CH2, CH3 and part of the hinge region. The modified Fc fragment can be derived from, for example, IgGI, IgG2, IgG3, or IgG4. FcLALA is a modified Fc fragment with a LALA mutation (L234A, L235A), which triggers ADCC with lowered efficiency, and binds and activates human complement weakly. Hessell et al. 2007 Nature 449:101-104. Additional modifications to the Fc fragment are described in, for example, U.S. Pat. No. 7,217,798.
The linker separates the target protein/peptide and the biointeractive/analytical agent or any moiety comprising a reactive group which facilitates covalent attachment to the biointeractive/analytical agent. Its chemical structure is not critical, since it serves primarily as a spacer.
The linker is a chemical moiety that contains two reactive groups/functional groups, one of which can react with the target peptide/protein and the other with the biointeractive/bionanalyitical agent. The two reactive/functional groups of the linker are linked via a linking moiety or spacer, structure of which is not critical as long as it does not interfere with the coupling of the linker to the target protein/peptide and to the biointeractive/analytical agent.
The linker can be made up of amino acids linked together by peptide bonds. In some embodiments of the present invention, the linker is made up of from 1 to 20 amino acids linked by peptide bonds, wherein the amino acids are selected from the 20 naturally occurring amino acids. In various embodiments, the 1 to 20 amino acids are selected from the amino acids glycine, serine, alanine, methionine, asparagine, glutamine, cysteine and lysine. In some embodiments, a linker is made up of a majority of amino acids that are sterically unhindered, such as glycine and alanine. In some embodiments, linkers are polyglycines, polyalanines, combinations of glycine and alanine (such as poly(Gly-Ala)), or combinations of glycine and serine (such as poly(Gly-Ser)).
In some embodiments, the linker comprises 1 to 20 amino acids which are selected from unnatural amino acids. While a linker of 1-10 amino acid residues is preferred for conjugation with the biointeractive or analytical agent, the present invention contemplates linkers of any length or composition. An example of non-natural amino acid linker is 8-Amino-3,6-dioxaoctanoic acid having the following formula:
or its repeating units.
The linkers described herein are exemplary, and linkers that are much longer and which include other residues are contemplated by the present invention. Non-peptide linkers are also contemplated by the present invention.
In other embodiments, the linker comprises one or more alkyl groups, alkenyl groups, cycloalkyl groups, aryl groups, heteroaryl groups, heterocyclic groups, polyethylene glycol and/or one or more natural or unnatural amino acids, or combination thereof, wherein each of the alkyl, alkenyl, cycloalkyl, aryl, heteroaryl, heterocyclyl, polyethylene glycol and/or the natural or unnatural amino acids are optionally combined and linked together, or linked to the biointeractive/analytical agent and/or to the target protein/peptide, via a chemical group selected from —C(O)O—, —OC(O)—, —NHC(O)—, —C(O)NH—, —O—, —NH—, —S—, —C(O)—, —OC(O)NH—, —NHC(O)—O—, ═NH—O—, ═NH—NH— or ═NH—N(alkyl)-.
Linkers containing alkyl spacer are for example —NH—(CH2)z—C(O)— or —S—(CH2)z—C(O)— or —O—(CH2)z—C(O)—, —NH—(CH2)z—NH—, —O—C(O)—(CH2)z—C(O)—O—, —C(O)—(CH2)z—O—, —NHC(O)—(CH2)z—C(O)—NH— and the like wherein z is 2-20 can be used. These alkyl linkers can further be substituted by any non-sterically hindering group, including, but not limited to, a lower alkyl (e.g., C1-C6), lower acyl, halogen (e.g., Cl, Br), CN, NH2, or phenyl.
The linker can also be of polymeric nature. The linker may include polymer chains or units that are biostable or biodegradable. Polymers with repeat linkage may have varying degrees of stability under physiological conditions depending on bond lability. Polymers may contain bonds such as polycarbonates (—O—C(O)—O—), polyesters (—C(O)—O—), polyurethanes (—NH—C(O)—O—), polyamide (—C(O)—NH—). These bonds are provided by way of examples, and are not intended to limit the type of bonds employable in the polymer chains or linkers of the invention. Suitable polymers include, for example, polyethylene glycol (PEG), polyvinyl pyrrolidone, polyvinyl alcohol, polyamino acids, divinylether maleic anhydride, N-(2-hydroxypropyl)-methacrylicamide, dextran, dextran derivatives, polypropylene glycol, polyoxyethylated polyol, heparin, heparin fragments, polysaccharides, cellulose and cellulose derivatives, starch and starch derivatives, polyalkylene glycol and derivatives thereof, copolymers of polyalkylene glycols and derivatives thereof, polyvinyl ethyl ether, and the like and mixtures thereof. A polymer linker is for example polyethylene glycol (PEG). The PEG linker can be linear or branched. A molecular weight of the PEG linker in the present invention is not restricted to any particular size, but certain embodiments have a molecular weight between 100 to 5000 Dalton for example 500 to 1500 Dalton.
The linker contains appropriate functional-reactive groups at both terminals that form a bridge between the amino group of the target peptide/protein and a functional/reactive group on the biointeractive/bioanalytical agent
The linker may comprise several linking moieties (or spacer) of different nature (for example a combination of amino acids, heterocyclyl moiety, PEG and/or alkyl moieties). In this instance, each linking moiety contains appropriate functional-reactive groups at both terminals in order to link these moieties together and in order to form a bridge at each terminal with the respective partner.
The modified target protein/peptide or construct thereof (i.e. peptide/protein attached to a partial linker) include reactive groups which can react with available reactive functionalities on the analytical/biointeractive agent or construct thereof (i.e. previously attached a partial linker) to form a covalent bond. Reactive groups are chemical groups capable of forming a covalent bond. Reactive groups are located at one site of conjugation and can generally be carboxy, phosphoryl, acyl group, ester or mixed anhydride, maleimide, N-hydroxysuccinimide, tetrazine, alkyne, imidate, pyridine-2-yl-disulfanyl, thereby capable of forming a covalent bond with functionalities like amino group, hydroxyl group, alkene group, carboxy group, hydrazine group, hydroxylamine group, an azide group or a thiol group at the other site of conjugation.
Reactive groups of particular interest for conjugating a target peptide/target protein to a biointeractive/analytical agent and/or a linker moiety and/or to conjugate various linking moieties of different nature together are N-hydroxysuccinimide, alkyne (more particularly cyclooctyne).
Functional group (Fg) include: 1. thiol groups for reacting with reactive groups such as maleimides, tosyl sulfone or pyridine-2-yldisulfanyl; 2. amino groups (for example amino functionality of an amino acid) for reacting with reactive group such as carboxylic acid or activated carboxylic acid (e.g. amide bond formation via N-hydroxysuccinamide chemistry), phosphoryl groups, acyl group or mixed anhydride; 3. Azide to undergo a Huisgen cycloaddition with an alkyne and more particularly a cyclooctyne reactive group (more commonly known as click chemistry); 4. carbonyl group to react with a reactive group selected from hydroxylamine or hydrazine to form oxime or hydrazine respectively; 5. Alkene to react with a tetrazine reactive group in an aza [4+2] addition. While several examples of linkers and functionalities/reactive group are described herein, the invention contemplates linkers or any length and composition.
The term “toxin” refers to small molecules or peptides that are capable of interacting with a macromolecules such as enzyme, cellular receptors and cells and cause harm or diseases. Such toxins can be used in cancer therapy to destroy cancer cells. Because of their toxicity, such toxins cannot be used as a drug themselves. They are typically linked to a protein that directs them to the cancer cells. Examples of toxins are MMAF (monomethyl auristatin F), MMAE (monomethyl auristatin E), mertansine (DM-1), maytansine, cryptophycin, tubulysin and dolastatin 10.
The term “chelator” or “chelating agent” refers to an organic molecule capable of forming a complex with metal ions (e.g. lanthanide). Chelators are commonly used to label protein or peptide. The end-products of metal ion conjugates are used for radioimmunodetection, radioimmunotherapy, magnetic resonance imaging, photodynamic therapy or other similar modalities. Non-limiting examples of chelator or chelating agents are DTPA (Diethylenetriaminepentaacetic Anhydride) and derivative thereof, NOTA (1,4,7-triazacyclononane-N,N′,N″-triacetic acid) and derivative thereof such As NODA-GA, DOTA (1,4,7,10-tetraazacyclododecane-N,N′,N″,N′″-tetraacetic acid) (binding radioactive metal ion) and derivative thereof, TETA (1,4,8,11-tetraazacyclotetradecane-N,N′,N″,N′″-tetraacetic acid) and derivative thereof, DTTA N-(p-isothiocyanatobenzyl)-diethylenetriamine-N,N′,N″,N′″-tetraacetic acid. These and other chelators are readily available from commercial sources.
The term “imaging reagent” are chemicals designed to allow clinicians to determine whether a mass is benign or malignant and locate metastatic cancer sites in the body. Imaging agents target a particular tumor, after which the imaging instruments can be adjusted to neutralize the target. Examples of imaging agents are fluorophores, vivotags, fluorescent nanoparticles, luciferin and xenolight.
The term “Fluorophore” refer to a chemical compound that can re-emit light upon light excitation. Fluorophores typically contain several combined aromatic groups, or plane or cyclic molecules with several π bonds. Fluorophores are generally covalently bonded to a macromolecule, serving as a marker (or dye, or tag, or reporter) for affine or bioactive reagents (antibodies, peptides, nucleic acids). Fluorophores are notably used to stain tissues, cells, or materials in a variety of analytical methods, i.e., fluorescent imaging and spectroscopy. Examples include fluorescein, rhodamine, Cy dyes such as Cy5 and Cy7, Alexa dies such as Alexa 750, Alexa 647, and Alexa 488, coumarins, and the like.
A “biointeractive agent” as used herein refers to an organic moiety or compound that invokes a biological response when introduced into a living tissue or cell. Example of biointeractive agents include antigens, toxins, therapeutic proteins or peptides and the like. Biointeractive agents may be small molecules and macromolecules.
An “analytical agent” as used herein refers to an organic moiety or compound that can be detected by instrumental methods for qualitatively or quantitatively characterizing the material to which the analytical agent is bound or otherwise associated. Examples of such analytical agents include labels for example fluorophores or radio labels.
Various embodiments of the invention are described herein. It will be recognized that features specified in each embodiment may be combined with other specified features to provide further embodiments.
In embodiment 1, the invention pertains to a method for modifying a target protein or a target peptide at the amino functionality of the N-terminal amino acid comprising the steps of:
In embodiment 2, the invention pertains to a method according to embodiment 1 wherein said protein or peptide containing a histidine amino acid at the position adjacent to the N-terminal amino acid is prepared by replacing the amino acid adjacent to the N-terminal amino acid of said target protein or target peptide with a histidine amino acid.
In embodiment 3, the invention pertains to a method according to embodiment 1 wherein the protein or peptide containing a histidine amino acid at the position adjacent to the N-terminus amino acid is prepared by replacing the two amino acids at the N-terminus of said target protein or target peptide with an amino acid sequence XH- wherein H is histidine and X is an amino acid selected from M, A, Q, N and G.
In embodiment 4, the invention pertains to a method according to embodiment 3, wherein the amino acid sequence XH- is MH- and AH-.
In embodiment 5, the invention pertains to a method according to embodiment 1 wherein the protein or peptide containing a histidine amino acid at the position adjacent to the N-terminus amino acid is prepared by replacing the three amino acids at the N-terminus of said target protein or target peptide with an amino acid sequence XHX′- wherein H is histidine and X and X′ are independently an amino acid selected from M, A, Q, N and G.
In embodiment 6, the invention pertains to a method according to embodiment 5, wherein the amino acid sequence XHX′- is selected from AHA- and MHA.
In embodiment 7, the invention pertains to a method according to embodiment 1, wherein the protein or peptide containing a histidine amino acid at the position adjacent to the N-terminus amino acid is prepared by appending a two amino acid sequence of Formula XH or a three amino acid sequence of Formula XHX′- at the N-terminus of said target protein or target peptide, wherein H is histidine and X and X′ are independently selected from M, A, Q, N and G.
In embodiment 8, the invention pertains to a method according to embodiment 1, wherein the protein or peptide containing a histidine amino acid at the position adjacent to the N-terminus amino acid is prepared by appending a histidine tag at the N-terminus of the said target protein or target peptide. In one aspect of this embodiment, the histidine tag comprises 1 to 10 histidine amino acids. In a further aspect of this embodiment, the histidine tag further comprises one or more methionine amino acids as long as they are not positioned at the position adjacent to the N-terminus amino acid.
In embodiment 9, the invention pertains to a method according to embodiment 8, wherein the protein or peptide containing a histidine amino acid at the position adjacent to the N-terminus amino acid is prepared by appending an amino acid sequence selected from MHHHHHH- or MHHHHHHM- to the N-terminus of the said target protein or target peptide.
In embodiment 10, the invention pertains to a method of any one of embodiments 1-9 wherein the acylating agent is an activated form of the acid of the following Formula:
HO—C(O)-(L1)n-R1 wherein:
L1 is a linker;
R1 is a moiety comprising a reactive group that facilitates covalent attachment to a biointeractive agent or to an analytical agent or R1 is a biointeractive agent or an analytical agent,
n is 0 or 1.
Activated forms of carboxylic acid are well known to someone of ordinary skill in the art. In embodiment 10A, activated forms of carboxylic acids for use in the invention are selected from esters such as fluorophenyl ester; anhydride or mixed anhydride; acyl chloride, acyl azide; acyl phosphate and N-hydroxysuccinimide activated acid.
In embodiment 12, the invention pertains to a method of embodiment 10, 10A or 11 wherein n is 1 and L1 comprises one or more alkyl groups, alkenyl groups, cycloalkyl groups, aryl groups, heteroaryl groups, heterocyclic groups, polyethylene glycol and/or one or more natural or unnatural amino acids, or combination thereof, wherein each of the alkyl, alkenyl, cycloalkyl, aryl, heteroaryl, heterocyclyl, polyethylene glycol and/or the natural or unnatural amino acids are optionally combined and linked together, or linked to the biointeractive/analytical agent and/or to the target protein/peptide, via a chemical group selected from —C(O)O—, —OC(O)—, —NHC(O)—, —C(O)NH—, —O—, —NH—, —S—, —C(O)—, —OC(O)NH—, —NHC(O)—O—, ═NH—O—, ═NH—NH— or ═NH—N(alkyl)-.
In embodiment 13, the invention pertains to a method according to embodiment 12 wherein the linker is a linear or branched alkyl or a polyethylene glycol having a molecular weight of between 100 and 5000 kD. In embodiment 13A, a linker of most interest is an unbranched oligo ethylene glycol moiety of Formula:
wherein y is 0 to 34.
In embodiment 14, the invention pertains to a method according to embodiment 10, 10A, 11, 12 or 13, wherein R1 is biointeractive/analytical agent.
In embodiment 15, the invention pertains to a method according to embodiment 14 wherein R1 is biotin. Non-limiting examples of such acylating agent for biotinylation are:
SO3NHS-biotin of Formula:
SO3NHS-LC-biotin of Formula:
NHS-PEG24-biotin of Formula:
and other known biotin constructs which are readily available for example from commercial sources.
Embodiment 16, the invention pertains to a method according to embodiment 14 wherein R1 is a fatty acid (FA) moiety. Examples of fatty acid are C6-70alkyl, C6-70alkenyl, C6-70alkynyl chain substituted with at least one carboxylic acid (for example 1, 2, 3 or 4 CO2H) and optionally further substituted with hydroxyl group. Fatty acid (FA) is preferably conjugated to the target protein or target peptide via a linker L1. In embodiment 16A, the invention pertains to a method according to embodiment 16 wherein the R1 is selected from the following acids:
R2 is CO2H, H;
R3, R4 and R5 are independently of each other H, OH, CO2H, —CH═CH2 or —C≡CH;
Ak1 is a branched C6-C30alkylene;
q, r and p are independently of each other an integer between 6 and 30; and wherein the point of attachment is any of the CO2H functionality; or an amide, an ester or a pharmaceutically acceptable salt thereof.
In embodiment 16C, R1 is selected from the following fatty acids:
wherein Ake, Aka, Ak4, Ak5 and Ak6 are independently a (C8-20)alkylene, R6 and R7 are independently (C8-20)alkyl.
In embodiment 16D, R1 is selected from the following fatty acids:
These fatty acid moieties have been described in co-filed U.S. application Nos. 62/015,862 (attorney docket number PAT056274-US-PSP), 62/082,327 (Attorney docket number PAT056274-US-PSP02) and 62/107,016 (Attorney docket number PAT056274-US-PSP03).
In embodiment 17, the invention pertains to a method according to any one of embodiment 1-14 and 16 wherein the acylating agent is:
R8 is a linear or branched C6-70alkyl, a linear or branched C6-70alkenyl or a linear or branched C6-70alkynyl, each of which is optionally substituted with optionally substituted with 1 to 3 substituents selected from carboxy and hydroxyl;
s is 1 to 34. In a particular aspect of this embodiment, R8 is
wherein Ak1, R2, R3, R4, R5, q, r and p are defined supra. Examples of such fatty acid-PEG-NHS moieties have been described in a co-filed application No. 62/015,862 (attorney docket number PAT056274-US-PSP) and U.S. applications No. 62/082,327 (Attorney docket number PAT056274-US-PSP02) and 62/107,016 (Attorney docket number PAT056274-US-PSP03).
In embodiment 18, the invention pertains to a method according to embodiment 10, 10A, 11, 12 or 13 wherein R1 is a moiety comprising a reactive group that facilitates covalent attachment to a biointeractive agent.
In embodiment 19, the invention pertains to a method according to embodiment 18, wherein the reactive group is selected from acyl, ester or mixed anhydride, alkyne, tetrazine, maleimide, imidate, carboxy. In one particular aspect of this embodiment, the reactive group is selected from cycloalkyne, tetrazine and maleimide. In yet another aspect of this embodiment, the reactive group is a cycloalkyne moiety.
In embodiment 20, the invention pertains to a method according to embodiment 18 or 19, wherein R1 is a cyclooctyne moiety. In one aspect of this embodiment, the acylating agent is an activated form of the following carboxylic acids:
or an acylating agent of Formula:
In another aspect of embodiment 19, the reactive group is tetrazine. Non-limiting examples of acylating moieties comprising a tetrazine reactive group are activated form of the following acids:
or an acylating agent of Formula:
In yet another aspect of embodiment 19, the reactive group is maleimide. Non-limiting examples of acylating moieties comprising maleimide reactive group are activated form of the following acids:
wherein Ak7 is C2-10alkylene;
In embodiment 21, the invention relates to a method according to any one of embodiments 1 to 13 and 18 to 20 wherein the acylating agent is:
In embodiment 22, the invention pertains to a method of any one of embodiments 18 to 21 further comprising a step of reacting a biointeractive agent or an analytical agent with the reactive group present in the acylating agent, wherein the biointeractive or bionalytical agent is reacted via a functional group optionally via a linker L2.
In embodiment 23, the invention pertains to the method of embodiment 22 wherein the functional group is selected from amino group, azide group, alkene group, thiol group and hydrazine, hydroxylamine groups. In embodiment 23A, a preferred aspect of embodiment 23, the functional group is azide.
In embodiment 24, the invention relates to a method according to embodiment 22, 23 or 23A wherein the biointeractive agent or an analytical agent comprising an azido functional group is:
wherein y is 0 to 34 and FA is a fatty acid residue attached via one of its carboxylic acid functionality to the PEG linker. In another embodiment, FA has the following Formulae:
Another example of biointeractive agent comprising an azido functional group is a therapeutic peptide wherein an azido lysine has been introduced (preferably at the N-terminus) optionally via a linker (e.g. polyglycine). An example of such biointeractive agent is.
In embodiment 25, the invention relates to a method according to any one of the preceding embodiments wherein the biointeractive or analytical agent is selected from biotin, fluorophore, toxin, chelator, a half-life extending moiety such as for example an albumin binding moiety or other plasma protein binding moiety, native Fc or Fc variants, an imaging reagent and a peptide.
In embodiment 25A, the biointeractive agent is a toxin. A non-limiting example of toxin is MMAF (monomethylauristation):
In embodiment 26, the invention relates to a method according to any one of the preceding embodiments wherein the target protein or target peptide is APJ agonist peptide, a native Fc, or Fc variant or a GDF15 protein or mutant thereof.
In embodiment 27, the invention relates to a method according to any one of the preceding embodiments wherein the pH is less than 5.
In embodiment 27A, the invention relates to a method according to any one of the preceding embodiments wherein the pH is about 4.5. In embodiment 27B, another aspect of embodiment 27, the pH is from 4.5 to 4.8. In one aspect of embodiment 27B, the pH is about 4.6. In another aspect of embodiment 27B, the pH is about 4.75. The pH can be adjusted using buffer solution of sodium acetate, sodium phosphate or potassium phosphate or combination thereof. Non-limiting examples of buffers are NaOAc, sodium or potassion phosphate dibasic (Na2HPO4 or K2HPO4).
In embodiment 28, the invention relates to a method according to any one of the preceding embodiments wherein the pH is 4.
In another aspect, a conjugate is disclosed that is prepared from the methods disclosed herein. In another aspect, a vaccine is disclosed that is prepared with a conjugate or a modified protein/peptide disclosed herein. In another aspect, a therapeutic protein/peptide is disclosed having a modified protein/peptide disclosed herein. In another aspect, an imaging agent is disclosed having a modified protein/peptide disclosed herein. In another aspect, a labeling tool is disclosed having modified protein/peptide disclosed herein.
In another embodiment, the methods, the conjugates obtained from the methods, the linkers and the biointeractive/analytical agent are those defined by in the Examples section below.
Step a) of the Method: Synthesis of Target Peptide/Protein so that the Resulting Protein or Peptide Contains a Histidine Amino Acid at the Position Adjacent to the N-Terminus Amino Acid.
A target protein/peptide can be one that already possesses a histidine amino acid at the position adjacent to the N-terminus amino acid. If a target protein does not possess a histidine amino acid at the position adjacent to the N-terminus amino acid, it is possible to modify the protein/peptide according to step a) of the invention. Insertions of amino acid residues in proteins can be brought about by standard techniques known to persons skilled in the art, such as post-translational chemical modification or transgenetic techniques.
The instant method of the invention involves step a) which is the modification of the target peptide or protein so that to activate the amino functionality of the amino acid at the N-terminus.
Step a may be represented by the following schemes 1 to 5:
Scheme 1 described step a) wherein the target protein or peptide is modified by replacing the amino acid adjacent to the N-terminal amino acid of said target protein or target peptide with a histidine amino acid:
wherein P is a target protein/peptide with its last 3 amino acids at the N-terminus (Aa3, Aa2, Aa1).
Scheme 2 described step a) wherein the target protein or peptide is modified by replacing the two amino acids at the N-terminus (i.e. Aa1 and Aa2) of said target protein or target peptide with an amino acid sequence XH- wherein H is histidine and X is an amino acid selected from M, A, Q, N and G:
Scheme 3 described step a) wherein the target protein or peptide is modified by replacing the three amino acids at the N-terminus (i.e. Aa1, Aa2 and Aa3) of said target protein or target peptide with an amino acid sequence XHX′- wherein H is Histidine and X and X′ are independently M, A, Q, N and G;
Schemes 4 and 5 described step a) wherein the target peptide or protein is modified by by appending a two amino acid sequence of Formula XH or a three amino acid sequence of Formula XHX′- at the N-terminus of said target protein or target peptide, wherein H is histidine and X and X′ are independently selected from M, A, Q, N and G:
The modified peptides or polypeptides/protein as described supra in Schemes 1 to 5 may be produced by either synthetic chemical processes or by recombinant methods or combination of both methods. The peptides or polypeptides/protein constructs may be prepared as full-length or may be synthesized as non-full length fragments and joined. The peptides and polypeptides of the present invention can be produced by the per se known procedures for peptide synthesis. The methods for peptide synthesis may be any of a solid-phase synthesis and a liquid-phase synthesis. Thus, the peptide and polypeptide of interest can be produced by condensing a partial peptide or amino acid capable of constituting the protein with the residual part thereof and, when the product has a protective group, the protective group is detached whereupon a desired peptide can be manufactured. The known methods for condensation and deprotection include the procedures described in the following literature (1)-(5).
After the reaction, the peptide or polypeptide can be purified and isolated by a combination of conventional purification techniques such as solvent extraction, column chromatography, liquid chromatography, size exclusion chromatography (SEC) and recrystallization. Where the peptide isolated as above is a free compound, it can be converted to a suitable salt by the known method. Conversely where the isolated product is a salt, it can be converted to the free peptide by the known method.
The amide of polypeptide can be obtained by using a resin for peptide synthesis which is suited for amidation. The resin includes chloromethyl resin, hydroxymethyl resin, benzhydrylamine resin, aminomethyl resin, 4-benzyloxybenzyl alcohol resin, 4-methylbenz-hydrylamine resin, PAM resin, 4-hydroxymethylmethylphenylacetamidomethyl resin, polyacrylamide resin, 4-(2′,4′-dimethoxyphenyl-hydroxymethyl)phenoxy resin, 4-(2′,4′-dimethoxyphenyl-Fmoc-aminomethyl)phenoxy resin, 2-chlorotrityl chloride resin, and so on. Using such a resin, amino acids whose α-amino groups and functional groups of side-chain have been suitably protected are condensed on the resin according to the sequence of the objective peptide by various condensation techniques which are known per se. At the end of the series of reactions, the peptide or the protected peptide is removed from the resin and the protective groups are removed and if necessary, disulfide bonds are formed to obtain the objective polypeptide.
For the condensation of the above-mentioned protected amino acids, a variety of activating reagents for peptide synthesis can be used such as HATU, HCTU or e.g. a carbodiimide. The carbodiimide includes DCC, N,N′-diisopropylcarbodiimide, and N-ethyl-N′-(3-dimethylaminopropyl)carbodiimide. For activation with such a reagent, a racemization inhibitor additive, e.g. HOBt or Oxyma Pure can be used. The protected amino acid can be directly added to the resin along with the activation reagents and racemization inhibitor or be pre-activated as symmetric acid anhydride, HOBt ester, or HOOBt ester then added to the resin. The solvent for the activation of protected amino acids or condensation with the resin can be properly selected from among those solvents which are known to be useful for peptide condensation reactions. For example, N,N-dimethylformamide, N-methylpyrrolidone, chloroform, trifluoroethanol, dimethyl sulfoxide, DMF, pyridine, dioxane, methylene chloride, tetrahydrofuran, acetonitrile, ethyl acetate, or suitable mixtures of them can be mentioned. The reaction temperature can be selected from the range hitherto-known to be useful for peptide bond formation and is usually selected from the range of about −20° C.-50° C. The activated amino acid derivative is generally used in a proportion of 1.5-4 fold excess. If the condensation is found to be insufficient by a test utilizing the ninhydrin reaction, the condensation reaction can be repeated to achieve a sufficient condensation without removing the protective group. If repeated condensation still fails to provide a sufficient degree of condensation, the unreacted amino group can be acetylated with acetic anhydride or acetylimidazole.
The protecting group of amino group for the starting material amino acid includes Z, Boc, tertiary-amyloxycarbonyl, isobornyloxycarbonyl, 4-methoxybenzyloxycarbonyl, Cl—Z, Br—Z, adamantyloxycarbonyl, trifluoroacetyl, phthalyl, formyl, 2-nitrophenylsulfenyl, diphenylphosphinothioyl, or Fmoc. The carboxy-protecting group that can be used includes but is not limited to the above-mentioned C1-6 alkyl, C3-8 cycloalkyl and C6-10aryl-C1-2alkyl as well as 2-adamantyl, 4-nitrobenzyl, 4-methoxybenzyl, 4-chlorobenzyl, phenacyl, benzyloxycarbonylhydrazido, tertiary-butoxycarbonylhydrazido, and tritylhydrazido.
The hydroxy group of serine and threonine can be protected by esterification or etherification. The group suited for said esterification includes carbon-derived groups such as lower alkanoyl groups, e.g. acetyl etc., aroyl groups, e.g. benzoyl etc., benzyloxycarbonyl, and ethoxycarbonyl. The group suited for said etherification includes benzyl, tetrahydropyranyl, and tertiary-butyl. The protective group for the phenolic hydroxyl group of tyrosine includes Bzl, Cl2-Bzl, 2-nitrobenzyl, Br—Z, and tertiary-butyl.
The protecting group of imidazole for histidine includes Tos, 4-methoxy-2,3,6-tri ethylbenzenesulfonyl, DNP, benzyloxymethyl, Bum, Boc, Trt, and Fmoc.
The activated carboxyl group of the starting amino acid includes the corresponding acid anhydride, azide and active esters, e.g. esters with alcohols such as pentachlorophenol, 2,4,5-trichlorophenol, 2,4-dinitrophenol, cyanomethyl alcohol, p-nitrophenol, HONB, N-hydroxysuccinimide, N-hydroxyphthalimide, HOBt, etc. The activated amino group of the starting amino acid includes the corresponding phosphoramide.
The method for elimination of protective groups includes catalytic reduction using hydrogen gas in the presence of a catalyst such as palladium black or palladium-on-carbon, acid treatment with anhydrous hydrogen fluoride, methanesulfonic acid, trifluoromethanesulfonic acid, trifluoroacetic acid, or a mixture of such acids, base treatment with diisopropylethylamine, triethylamine, piperidine, piperazine, reduction with sodium metal in liquid ammonia. The elimination reaction by the above-mentioned acid treatment is generally carried out at a temperature of −20° C.-40° C. and can be conducted advantageously with addition of a cation acceptor such as anisole, phenol, thioanisole, m-cresol, p-cresol, dimethyl sulfide, 1,4-butanedithiol, 1,2-ethanedithiol. The 2,4-dinitrophenyl group used for protecting the imidazole group of histidine can be eliminated by treatment with thiophenol, while the formyl group used for protecting the indole group of tryptophan can be eliminated by alkali treatment with dilute sodium hydroxide solution or dilute aqueous ammonia as well as the above-mentioned acid treatment in the presence of 1,2-ethanedithiol, 1,4-butanedithiol.
The method for protecting functional groups which should not take part in the reaction of the starting material, the protective groups that can be used, the method of removing the protective groups, and the method of activating the functional groups that are to take part in the reaction can all be selected judicially from among the known groups and methods.
An another method for obtaining the amide form of the polypeptide comprises amidating the -carboxyl group of the C-terminal amino acid at first, then extending the peptide chain to the N-side until the desired chain length, and then selectively deprotecting the α-amino group of the C-terminal peptide and the α-carboxy group of the amino acid or peptide that is to form the remainder of the objective polypeptide and condensing the two fragments whose α-amino group and side-chain functional groups have been protected with suitable protective groups mentioned above in a mixed solvent such as that mentioned hereinbefore. The parameters of this condensation reaction can be the same as described hereinbefore. From the protected peptide obtained by condensation, all the protective groups are removed by the above-described method to thereby provide the desired crude peptide. This crude peptide can be purified by known purification procedures and the main fraction be lyophilized to provide the objective amidated polypeptide. To obtain an ester of the polypeptide, the α-carboxyl group of the C-terminal amino acid is condensed with a desired alcohol to give an amino acid ester and then, the procedure described above for production of the amide is followed.
Alternatively, recombinant expression methods are particularly useful for the production of the modified peptide or protein as described in Schemes 1 to 5. Recombinant protein expression using a host cell (a cell artificially engineered to comprise nucleic acids encoding the sequence of the peptide and which will transcribe and translate, and optionally, secrete the peptide into the cell growth medium) is used routinely in the art. For recombinant production process, a nucleic acid coding for amino acid sequence of the peptide would typically be synthesized by conventionally methods and integrated into an expression vector. Such methods is particularly preferred for manufacture of the polypeptide compositions comprising the peptides fused to additional peptide sequences or other proteins or protein fragments or domains. The host cell can optionally be at least one selected from from E. Coli, COS-1, COS-7, HEK293, BHT21, CHO, BSC-1, Hep G2, 653, SP2/0, 293, heLa, myeloma, lymphoma, yeast, insect or plant cells, or any derivative, immortalized or transformed cell thereof.
The invention also encompasses polynucleotides encoding the above-described variants that may be in the form of RNA or in the form of DNA, which DNA includes cDNA, genomic DNA, and synthetic DNA. The DNA may be double-stranded or single-stranded. The coding sequences that encode the compositions of the present invention may vary as a result of the redundancy or degeneracy of the genetic code.
The polynucleotides that encode for the compositions of the present invention may include the following: only the coding sequence for the variant, the coding sequence for the variant and additional coding sequence such as a functional polypeptide, or a leader or secretory sequence or a pro-protein sequence; the coding sequence for the variant and non-coding sequence, such as introns or non-coding sequence 5′ and/or 3′ of the coding sequence for the variant. Thus the term “polynucleotide encoding a variant” encompasses a polynucleotide that may include not only coding sequence for the variant but also a polynucleotide, which includes additional coding and/or non-coding sequence.
The invention further relates to variants of the described polynucleotides that encode for fragments, analogs and derivatives of the polypeptide that contain the indicated substitutions. The variant of the polynucleotide may be a naturally occurring allelic variant of the human GDF15 sequence, a non-naturally occurring variant, or a truncated variant as described above. Thus, the present invention also includes polynucleotides encoding the variants described above, as well as variants of such polynucleotides, which variants encode for a fragment, derivative or analog of the disclosed variant. Such nucleotide variants include deletion variants, substitution variants, truncated variants, and addition or insertion variants as long as at least one of the indicated amino acid substitutions of the first or second embodiments is present.
The polynucleotides of the invention can be expressed in hosts after the sequences have been operably linked to (i.e., positioned to ensure the functioning of) an expression control sequence. These expression vectors are typically replicable in the host organisms either as episomes or as an integral part of the host chromosomal DNA. Commonly, expression vectors will contain selection markers, e.g., tetracycline, neomycin, and dihydrofolate reductase, to permit detection of those cells transformed with the desired DNA sequences. The GDF15 variant can be expressed in mammalian cells, insect, yeast, bacterial or other cells under the control of appropriate promoters. Cell free translation systems can also be employed to produce such proteins using RNAs derived from DNA constructs of the present invention.
Escherichia Coli (E. coli) is a prokaryotic host useful particularly for cloning the polynucleotides of the present invention. Other microbial hosts suitable for use include Bacillus subtilus, Salmonella typhimurium, and various species of Serratia, Pseudomonas, Streptococcus, and Staphylococcus, although others may also be employed as a matter of choice. In these prokaryotic hosts, one can also make expression vectors, which will typically contain expression control sequences compatible with the host cell (e.g., an origin of replication). In addition, any of a number of well-known promoters may be present, such as the lactose promoter system, a tryptophan (Trp) promoter system, a beta-lactamase promoter system, or a promoter system from phages lambda or T7. The promoters will typically control expression, optionally with an operator sequence, and have ribosome binding site sequences and the like, for initiating and completing transcription and translation.
One skilled in the art of expression of proteins will recognize that methionine or methionine-arginine sequence can be introduced at the N-terminus of the mature sequence for expression in E. coli and are contemplated within the context of this invention. Thus, unless otherwise noted, compositions of the present invention expressed in E. coli have a methionine sequence introduced at the N-terminus.
Other microbes, such as yeast or fungi, may also be used for expression. Pichia pastoris, Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Pichia angusta are examples of preferred yeast hosts, with suitable vectors having expression control sequences, such as promoters, including 3-phosphoglycerate kinase or other glycolytic enzymes, and an origin of replication, termination sequences and the like as desired. Aspergillus niger, Trichoderma reesei; and Schizophyllum commune, are examples of fungi hosts, although others may also be employed as a matter of choice.
Mammalian tissue cell culture may also be used to express and produce the polypeptides of the present invention. A number of suitable host cell lines capable of secreting intact variants have been developed in the art, and include the CHO cell lines, various COS cell lines, NSO cells, Syrian Hamster Ovary cell lines, HeLa cells, or human embryonic kidney cell lines (i.e. HEK293, HEK293EBNA).
Expression vectors for mammalian cells can include expression control sequences, such as an origin of replication, a promoter, an enhancer, and necessary processing information sites, such as ribosome binding sites, RNA splice sites, polyadenylation sites, and transcriptional terminator sequences. Preferred expression control sequences are promoters derived from SV40, adenovirus, bovine papilloma virus, cytomegalovirus, Raus sarcoma virus, and the like. Preferred polyadenylation sites include sequences derived from SV40 and bovine growth hormone.
The vectors containing the polynucleotide sequences of interest (e.g., that encode the compositions of the present invention and expression control sequences) can be transferred into the host cell by well-known methods, which vary depending on the type of cellular host. For example, calcium chloride transfection is commonly utilized for prokaryotic cells, whereas calcium phosphate treatment or electroporation may be used for other cellular hosts.
Various methods of protein purification may be employed and such methods are known in the art and described, for example, in Deutscher, Methods in Enzymology 182: 83-9 (1990) and Scopes, Protein Purification: Principles and Practice, Springer-Verlag, NY (1982). The purification step(s) selected will depend, for example, on the nature of the production process used for the compositions of the present invention.
The polypeptides may be prepared in substantially pure or isolated form (e.g., free from other polypeptides). The polypeptides can be present in a composition that is enriched for the polypeptide relative to other components that may be present (e.g., other polypeptides or other host cell components). For example, purified polypeptide may be provided such that the polypeptide is present in a composition that is substantially free of other expressed proteins, e.g., less than 90%, less than 60%, less than 50%, less than 40%, less than 30%, less than 20%, less than 10%, less than 5%, or less than 1%, of the composition is made up of other expressed proteins.
Step b) of the Method: Site Specific Conjugation to the Modified Protein/Peptide (from Step a)—Selective Acetylation of the Amino Group at the N-Terminus of the Modified Peptide/Protein
The acylation of the N-terminus amino group of a target protein or peptide may be represented by the following Scheme 6:
wherein PM is a modified peptide or protein according to step a), R1, L1 and n are as defined supra.
Preferably the activated form of the acid 6A is the NHS-ester. The acylation reaction is carried out in aqueous media at a pH of less than 6. In another embodiment, the acylation reaction is carried out at a pH of less than 5. In yet another embodiment, the acylation reaction is carried out at a pH of about 4. In yet another embodiment, the acylation reaction is carried out at a pH of about 4.5. In yet another embodiment, the acylation reaction is carried out at a pH between 4.5 to 4.8. In yet another embodiment the pH is about 4.6. In yet another embodiment, the pH is about 4.75. The pH can be adjusted using buffer solution of sodium acetate, sodium phosphate or potassium phosphate or combination thereof. Non-limiting examples of buffers are NaOAc, sodium or potassion phosphate dibasic (Na2HPO4 or K2HPO4).
R1 may be a biointeractive agent or an analytical agent.
Alternatively, R1 may be a moiety comprising a reactive group that facilitates covalent attachment to a biointeractive agent or to an analytical agent.
When R1 is a moiety comprising a reactive group, step b) of the method of the invention may be represented by the following scheme 7:
wherein PM, L1, and n are defined supra; M is a chemical moiety and Rg is a reactive group. Examples of Rg are acyl, ester or mixed anhydride, alkyne, tetrazine, maleimide, imidate, carboxy.
The method of the invention may further comprise a step of reacting a biointeractive agent or an analytical agent with the reactive group Rg of conjugate 7B, wherein the biointeractive or bionalytical agent is reacted via a corresponding functional group and optionally via a linker L2.
This step may be represented by the following Scheme 8:
wherein PM is a target protein or target peptide which has been modified according to step a) so that the resulting protein or peptide contains a histidine amino acid at the position adjacent to the N-terminus amino acid;
L1 and L2 are linkers;
Rg is a reactive group;
Fg is a functional group;
G is the resulting chemical group formed as a result of reacting Rg with Fg;
R′1 is a biointeractive or analytical agent;
n and t are independently 0 or 1.
Examples of functional group (Fg) are amino group, azide group, alkene group, thiol group or hydrazine, hydroxylamine groups.
Functional group (Fg) include: 1. thiol groups for reacting with reactive groups such as maleimides, tosyl sulfone or pyridine-2-yldisulfanyl; 2. amino groups (for example amino functionality of an amino acid) for reacting with reactive group such as carboxylic acid or activated carboxylic acid (e.g. amide bond formation via N-hydroxysuccinamide chemistry), phosphoryl groups, acyl group or mixed anhydride; 3. Azide to undergo a Huisgen cycloaddition with an alkyne and more particularly a cyclooctyne reactive group (more commonly known as click chemistry); 4. carbonyl group to react with a reactive group selected from hydroxylamine or hydrazine to form oxime or hydrazine respectively; 5. Alkene to react with a tetrazine reactive group in an aza [4+2] addition. While several examples of linkers and functionalities/reactive group are described herein, the invention contemplates linkers or any length and composition.
In one embodiment, the invention pertains to a method according to any one of embodiments 18-21 wherein R1 is a moiety containing an alkyne reactive group (i.e. Rg is alkyne or cycloalkyne or bicycloalkyne) that facilitates covalent attachment to a biointeractive agent containing an azide functionality (i.e.: in compound 8A, t is 0 and Fg is azido). Alternatively the biointeractive or analytical agent may be attached to a linker L2 which contains an azide functionality at a terminal position (i.e.: in compound 8A t is 1 and Fg is azido). Moieties containing an alkyne reactive group are readily available from commercial sources. Of particular interest are cycloalkyne moieties. Examples of the use of cyclic alkyne in click chemistry for protein labeling has been described in US 2009/0068738 which is herein incorporated by reference. Specific examples have been described supra in embodiment 20.
This chemistry involves an azide-alkyne Huisgen cycloaddition, which more commonly known as click chemistry. In this particular embodiment, the resulting chemical group G which is formed as a result of the azide-alkyne cycloaddition is a triazole as illustrated in scheme 9:
wherein all variables have been described supra and C1 is a mono, di or tricyclic carbocyclic or heterocyclic ring system optionally substituted with fluorine. In one embodiment, L1 is a C1-C20 alkylene linker wherein the alkylene chain is optionally substituted with oxo (═O), and wherein one or more carbon is replaced with O or NH.
In another embodiment, the invention pertains to a method according to any one of embodiments 18-21 wherein R1 is a moiety containing a tetrazine reactive group to facilitate covalent attachment to a biointeractive/analytical agent containing an alkene functionality (preferably a strained alkene) (i.e.: in compound 8A, s is 0 and Fg is alkene or cycloalkene). Alternatively the biointeractive or analytical agent may be attached to a linker L2 which contains an alkene functionality at a terminal position (i.e.: in compound 8A s is 1 and Fg is alkene or cycloalkene). Tetrazine moieties are readily available from commercial sources and non-limiting examples have been described in embodiment 19. This chemistry is known as an aza [4+2] cycloaddition. In this particular embodiment, the resulting chemical group G which is formed as a result of the tetrazine-alkene cycloaddition is a multicyclic group of Formula:
wherein u is an integer of 0 to 2 and v is an integer of 0 to 3.
Scheme 10 illustrates the further derivatisation using tetrazine-alkene cycloaddition
Wherein the variables are as defined supra and D is a strained alkene, i.e. a mono or bicycloakenyl ring system.
In another embodiment, the invention pertains to a method according to any one of embodiments 18-21 wherein R1 is a moiety containing a maleimide reactive group to facilitate covalent attachment to a biointeractive/analytical agent containing a thiol functionality (i.e.: in compound 8A, s is 0 and Fg is —SH). Alternatively the biointeractive or analytical agent may be attached to a linker L2 which contains an alkene functionality at a terminal position (i.e.: in compound 8A s is 1 and Fg is —SH). Maleimide containing moieties are readily available from commercial sources and non-limiting examples have been described in embodiment 19. In this particular embodiment, the resulting chemical group G which is formed as a result of the thiol-maleimide reaction is of Formula:
Scheme 11 illustrates the maleimide-thiol further derivatisation:
The chemistry and reagents described supra are used to generate the construct Fg-(L2)t-R′1 and/or activated form of HO—C(O)-(L1)n-R1 and/or activated form of HO—C(O)-(L1)n-Rg. Each linking unit may possess the appropriate reactive group/functional group at each terminal. The alkyne(cycloalkyne), maleimide or tetrazine reactive groups are reacted with a functional group (azide, thiol and alkene respectively) which is present on the reacting partner.
Thus, it may be desirable to modify proteins to alter the physico-chemical properties of the protein/peptide, such as e.g. to increase (or to decrease) solubility to modify the bioavailability of therapeutic proteins. In another embodiment, it may be desirable to modify the clearance rate in the body by conjugating compounds to the protein/peptide which binds to plasma proteins, such as e.g. albumin, or which increase the size of the protein to prevent or delay discharge through the kidneys. Conjugation may also alter and in particular decrease the susceptibility of a protein/peptide to hydrolysis, such as e.g. in vivo proteolysis.
In another embodiment, it may be desirable to conjugate a label to facilitate analysis of the protein/peptide. Examples of such labels include radioactive isotopes, fluorescent markers such as the fluorophores already described and enzyme substrates.
In still another embodiment, a compound is conjugated to a protein to facilitate isolation of the protein. For example, a compound with a specific affinity to a particular column material may be conjugated to the protein. It may also be desirable to modify the immunogenicity of a protein, e.g. by conjugating a protein so as to hide, mask or eclipse one or more immunogenic epitopes at the protein.
In one embodiment, the invention provides a method of improving pharmacological properties of target proteins. The improvement is with respect to the corresponding unmodified protein. Examples of such pharmacological properties include functional in vivo half-life, immunogenicity, renal filtration, protease protection and albumin binding or other plasma protein binding of any specific protein.
To the extent that the unmodified protein/peptide is a therapeutic protein, the invention also relates to the use of the modified proteins in therapy, and in particular to pharmaceutical compositions comprising the modified proteins. Thus, as used herein, the terms “treatment” and “treating” mean the management and care of a patient for the purpose of combating a condition, such as a disease or a disorder. The term is intended to include the full spectrum of treatments for a given condition from which the patient is suffering, such as administration of the active compound to alleviate the symptoms or complications, to delay the progression of the disease, disorder or condition, to alleviate or relief the symptoms and complications, and/or to cure or eliminate the disease, disorder or condition as well as to prevent the condition, wherein prevention is to be understood as the management and care of a patient for the purpose of combating the disease, condition, or disorder and includes the administration of the active compounds to prevent the onset of the symptoms or complications, The patient to be treated is preferably a mammal, in particular a human being, but it may also include animals, such as dogs, cats, cows, sheep and pigs. Nonetheless, it should be recognized that therapeutic regimens and prophylactic (preventative) regimens represents separate aspects for the uses disclosed herein and contemplated by treating physician or veterinarian.
A “therapeutically effective amount” of a modified protein as used herein means an amount sufficient to cure, alleviate or partially arrest the clinical manifestations of a given disease and its complications. An amount adequate to accomplish this is defined as “therapeutically effective amount”. Effective amounts for each purpose will depend on e.g. the severity of the disease or injury as well as the weight, sex, age and general state of the subject. It will be understood that determining an appropriate dosage may be achieved using routine experimentation, by constructing a matrix of values and testing different points in the matrix, which is all within the ordinary skills of a trained physician or veterinarian.
The methods and compositions disclosed herein provide modified proteins for use in therapy. As such, a typical parenteral dose is in the range of 10-9 mg/kg to about 100 mg/kg body weight per administration. Typical administration doses are from about 0.0000001 to about 10 mg/kg body weight per administration. The exact dose will depend on e.g. indication, medicament, frequency and mode of administration, the sex, age and general condition of the subject to be treated, the nature and the severity of the disease or condition to be treated, the desired effect of the treatment and other factors evident to the person skilled in the art. Typical dosing frequencies are twice daily, once daily, bi-daily, twice weekly, once weekly or with even longer dosing intervals. Due to the prolonged half-lives of the active compounds compared to the corresponding un-conjugated protein, dosing regimen with long dosing intervals, such as twice weekly, once weekly or with even longer dosing intervals is a particular embodiment. Many diseases are treated using more than one medicament in the treatment, either concomitantly administered or sequentially administered. It is, therefore, contemplated that the modified proteins in therapeutic methods for the treatment of one of the diseases can be used in combination with one or more other therapeutically active compound normally used in the treatment of a disease. It is also contemplated that the use of the modified protein in combination with other therapeutically active compounds normally used in the treatment of a disease in the manufacture of a medicament for that disease.
The conjugate of the instant invention may be administered in any of a variety of ways, including subcutaneously, intramuscularly, intravenously, intraperitoneally, inhalationally, intranasally, orally etc. Particularly preferred embodiments of the invention employ continuous intravenous administration of the conjugates of the instant invention, or an amide, ester, or salt thereof. The conjugates on the instant invention may be administered as a bolus or as a continuous infusion over a period of time. An implantable pump may be used. In certain embodiments of the invention, intermittent or continuous conjugates administration is continued for one to several days (e.g., 2-3 or more days), or for longer periods of time, e.g., weeks, months, or years. In some embodiments, intermittent or continuous conjugates administration is provided for at least about 3 days, preferably at least about 6 days. In other embodiments, intermittent or continuous conjugate administration is provided for at least about one week. In other embodiments, intermittent or continuous conjugate administration is provided for at least about two weeks. It may be desirable to maintain an average plasma conjugate concentration above a particular threshold value either during administration or between administration of multiple doses. A desirable concentration may be determined, for example, based on the subject's physiological condition, disease severity, etc. Such desirable value(s) can be identified by performing standard clinical trials. Alternatively, the peptides and conjugates thereof could be delivered orally via FcRn mechanism. (Nat Rev Immunol. 7(9), 715-25, 2007; Nat Commun. 3; 3:610, 2012, Am J Physiol Gastrointest Liver Physiol 304: G262-G270, 2013).
In another aspect, the present invention provides a pharmaceutical composition comprising a conjugate of the present invention or an amide, an ester or a salt thereof and one or more pharmaceutically acceptable carriers. The pharmaceutical composition can be formulated for particular routes of administration such as oral administration, subcutaneous administration, parenteral administration, and rectal administration, etc. In addition, the pharmaceutical compositions of the present invention can be made up in a solid form (including without limitation capsules, tablets, pills, granules, lyophilizates, powders or suppositories), or in a liquid form (including without limitation solutions, suspensions or emulsions). The pharmaceutical compositions can be subjected to conventional pharmaceutical operations such as aseptic manufacturing, sterilization and/or can contain conventional inert diluents, cake forming agents, tonicity agents, lubricating agents, or buffering agents, as well as adjuvants, such as preservatives, stabilizers, wetting agents, emulsifers and buffers, etc.
Pharmaceutical compositions suitable for injectable use typically include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersion.
For intravenous administration, suitable carriers include physiological saline, bacteriostatic water, Cremophor ELTM (BASF, Parsippany, N.J.) or phosphate buffered saline (PBS). In all cases, the composition should be sterile and should be fluid to the extent that easy syringability exists. Preferred pharmaceutical formulations are stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi. In general, the relevant carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (for example, glycerol, propylene glycol, and liquid polyethylene glycol, and the like), and suitable mixtures thereof. The proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants. Prevention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, polyalcohols such as mannitol, amino acids, sorbitol, sodium chloride in the composition. Prolonged absorption of the injectable compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminum monostearate and gelatin. In some embodiments, a multifunctional excipient such as recombinant albumin may be incorporated into the formulation process to facilitate the stabilization of the conjugate product from degradation and assist in the administration and release of the active component. (BioPharm International, 2012, Vol 23, Issue 3, pp 40-44).
Certain injectable compositions are aqueous isotonic solutions or suspensions, and suppositories are advantageously prepared from fatty emulsions or suspensions. Said compositions may be sterilized and/or contain adjuvants, such as preserving, stabilizing, wetting or emulsifying agents, solution promoters, salts for regulating the osmotic pressure and/or buffers. In addition, they may also contain other therapeutically valuable substances. Said compositions are prepared according to conventional mixing, granulating or coating methods, respectively, and contain about 0.1-75%, or contain about 1-50%, of the active ingredient.
Sterile injectable solutions can be prepared by incorporating the active compound in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by filtration sterilization. Generally, dispersions are prepared by incorporating the active compound into a sterile vehicle which contains a basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, the preferred methods of preparation are vacuum drying and freeze-drying which yields a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
Oral compositions generally include an inert diluent or an edible carrier. For the purpose of oral therapeutic administration, the active compound can be incorporated with excipients and used in the form of tablets, troches, or capsules, e.g., gelatin capsules. Oral compositions can also be prepared using a fluid carrier for use as a mouthwash. Pharmaceutically compatible binding agents, and/or adjuvant materials can be included as part of the composition. The tablets, pills, capsules, troches and the like can contain any of the following ingredients, or compounds of a similar nature: a binder such as microcrystalline cellulose, gum tragacanth or gelatin; an excipient such as starch or lactose, a disintegrating agent such as alginic acid, Primogel, or corn starch; a lubricant such as magnesium stearate or Sterotes; a glidant such as colloidal silicon dioxide; a sweetening agent such as sucrose or saccharin; or a flavoring agent such as peppermint, methyl salicylate, or orange flavoring. Formulations for oral delivery may advantageously incorporate agents to improve stability within the gastrointestinal tract and/or to enhance absorption.
For administration by inhalation, the inventive therapeutic agents are preferably delivered in the form of an aerosol spray from pressured container or dispenser which contains a suitable propellant, e.g., a gas such as carbon dioxide, or a nebulizer. It is noted that the lungs provide a large surface area for systemic delivery of therapeutic agents.
The agents may be encapsulated, e.g., in polymeric microparticles such as those described in U.S. publication 20040096403, or in association with any of a wide variety of other drug delivery vehicles that are known in the art. In other embodiments of the invention the agents are delivered in association with a charged lipid as described, for example, in U.S. publication 20040062718. It is noted that the latter system has been used for administration of a therapeutic polypeptide, insulin, demonstrating the utility of this system for administration of peptide agents.
Systemic administration can also be by transmucosal or transdermal means.
Suitable compositions for transdermal application include an effective amount of a conjugate of the invention with a suitable carrier. Carriers suitable for transdermal delivery include absorbable pharmacologically acceptable solvents to assist passage through the skin of the host. For example, transdermal devices are in the form of a bandage comprising a backing member, a reservoir containing the compound optionally with carriers, optionally a rate controlling barrier to deliver the compound of the skin of the host at a controlled and predetermined rate over a prolonged period of time, and means to secure the device to the skin.
Suitable compositions for topical application, e.g., to the skin and eyes, include aqueous solutions, suspensions, ointments, creams, gels or sprayable formulations, e.g., for delivery by aerosol or the like. Such topical delivery systems will in particular be appropriate for dermal application. They are thus particularly suited for use in topical, including cosmetic, formulations well-known in the art. Such may contain solubilizers, stabilizers, tonicity enhancing agents, buffers and preservatives.
In certain embodiments, the pharmaceutical composition is for subcutaneous administration. Suitable formulation components and methods for subcutaneous administration of polypeptide therapeutics (e.g., antibodies, fusion proteins and the like) are known in the art. See, e.g., Published United States Patent Application No 2011/0044977 and U.S. Pat. No. 8,465,739 and U.S. Pat. No. 8,476,239. Typically, the pharmaceutical compositions for subcutaneous administration contain suitable stabilizers (e.g, amino acids, such as methionine, and or saccharides such as sucrose), buffering agents and tonicifying agents.
As used herein a topical application may also pertain to an inhalation or to an intranasal application. They may be conveniently delivered in the form of a dry powder (either alone, as a mixture, for example a dry blend with lactose, or a mixed component particle, for example with phospholipids) from a dry powder inhaler or an aerosol spray presentation from a pressurised container, pump, spray, atomizer or nebuliser, with or without the use of a suitable propellant.
The invention further provides pharmaceutical compositions and dosage forms that comprise one or more agents that reduce the rate by which the compound of the present invention as an active ingredient will decompose. Such agents, which are referred to herein as “stabilizers,” include, but are not limited to, antioxidants such as ascorbic acid, pH buffers, or salt buffers, recombinant Albumin.
As used herein, the term “pharmaceutically acceptable salts” refers to salts that retain the biological effectiveness and properties of the conjugates of this invention and, which typically are not biologically or otherwise undesirable. In many cases, the conjugates of the present invention are capable of forming acid and/or base salts by virtue of the presence of amino and/or carboxyl groups or groups similar thereto.
Pharmaceutically acceptable acid addition salts can be formed with inorganic acids and organic acids, e.g., acetate, aspartate, benzoate, besylate, bromide/hydrobromide, bicarbonate/carbonate, bisulfate/sulfate, camphorsulfornate, chloride/hydrochloride, chlortheophyllonate, citrate, ethandisulfonate, fumarate, gluceptate, gluconate, glucuronate, hippurate, hydroiodide/iodide, isethionate, lactate, lactobionate, laurylsulfate, malate, maleate, malonate, mandelate, mesylate, methylsulphate, naphthoate, napsylate, nicotinate, nitrate, octadecanoate, oleate, oxalate, palmitate, pamoate, phosphate/hydrogen phosphate/dihydrogen phosphate, polygalacturonate, propionate, stearate, succinate, sulfosalicylate, tartrate, tosylate and trifluoroacetate salts.
Inorganic acids from which salts can be derived include, for example, hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like. Organic acids from which salts can be derived include, for example, acetic acid, propionic acid, glycolic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, toluenesulfonic acid, sulfosalicylic acid, and the like. Pharmaceutically acceptable base addition salts can be formed with inorganic and organic bases.
Inorganic bases from which salts can be derived include, for example, ammonium salts and metals from columns I to XII of the periodic table. In certain embodiments, the salts are derived from sodium, potassium, ammonium, calcium, magnesium, iron, silver, zinc, and copper; particularly suitable salts include ammonium, potassium, sodium, calcium and magnesium salts.
Organic bases from which salts can be derived include, for example, primary, secondary, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines, basic ion exchange resins, and the like. Certain organic amines include isopropylamine, benzathine, cholinate, diethanolamine, diethylamine, lysine, meglumine, piperazine and tromethamine.
The pharmaceutically acceptable salts of the present invention can be synthesized from a parent compound, a basic or acidic moiety, by conventional chemical methods. Generally, such salts can be prepared by reacting free acid forms of these compounds with a stoichiometric amount of the appropriate base (such as Na, Ca, Mg, or K hydroxide, carbonate, bicarbonate or the like), or by reacting free base forms of these compounds with a stoichiometric amount of the appropriate acid. Such reactions are typically carried out in water or in an organic solvent, or in a mixture of the two. Generally, use of non-aqueous media like ether, ethyl acetate, ethanol, isopropanol, or acetonitrile is desirable, where practicable. Lists of additional suitable salts can be found, e.g., in “Remington's Pharmaceutical Sciences”, 20th ed., Mack Publishing Company, Easton, Pa., (1985); and in “Handbook of Pharmaceutical Salts: Properties, Selection, and Use” by Stahl and Wermuth (Wiley-VCH, Weinheim, Germany, 2002).
As used herein, the term “pharmaceutically acceptable carrier” includes any and all solvents, dispersion media, coatings, surfactants, antioxidants, preservatives (e.g., antibacterial agents, antifungal agents), isotonic agents, absorption delaying agents, salts, preservatives, drugs, drug stabilizers, binders, excipients, disintegration agents, lubricants, sweetening agents, flavoring agents, dyes, multifunctional excipient such as recombinant albumin and the like and combinations thereof, as would be known to those skilled in the art (see, for example, Remington's Pharmaceutical Sciences, 18th Ed. Mack Printing Company, 1990, pp. 1289-1329). Except insofar as any conventional carrier is incompatible with the active ingredient, its use in the therapeutic or pharmaceutical compositions is contemplated.
ACN acetonitrile
BOC tert-Butyloxycarbonyl
DIEA diisopropylethylamine
Fmoc fluorenylmethyloxycarbonyl chloride
HATU 1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium-3-oxidhexafluorophosphate
HCTU 2-(6-Chloro-1H-benzotriazole-1-yl)-1,1,3,3-tetramethylaminium hexafluorophosphate
HPLC High performance liquid chromatography
HPF6 hexafluorophosphoric acid
LC liquid chromatography
MALDI Matrix-assisted laser desorption ionization
MS Mass spectrometry
NMR nuclear magnetic resonance
PBS Phosphate buffered saline
PEG polyethylene glycol
PS peptide synthesis
PG protective group
RP-HPLC reverse phase HPLC
SM starting material
SCF super critical fluid
SPPS Solid phase peptide synthesis
TIC total in current
TIPS triisopropylsilane
TFA trifluoracetic acid
Trt trityl
UPLC Ultra performance liquid chromatography
Flow: 0.5 mL/min
Gradient: 20% hold 0.5 min, ramp to 80% ACN in 10 min
General Peptide Synthesis (Step a of the Method of the Invention: Modifying Peptide so that the Resulting Peptide Contains a Histidine at the Position Adjacent to the N-Terminus Amino Acid)
The peptides were synthesized by standard solid phase Fmoc chemistry. The peptides were assembled on the Liberty microwave peptide synthesizer (CEM Corporation, North Carolina, USA). Peptides with an unsubstituted carboxamide on the C-terminus were synthesized from Fmoc protected Rink-Amide-AM-resin (Novabiochem, USA).
Synthesis Cycle: The resin was washed with DMF and DCM. Fmoc was removed by treatment with 20% piperidine/DMF (typically 7 ml per 0.1 mmol twice). The resin was washed with DMF and. Coupling was done by addition of the Fmoc-amino acid (5 eq.; 0.2 M solution in DMF), HCTU (5 eq.; 0.5 M solution in DMF), and DIPEA (10 eq.; 2 M solution in NMP) followed by mixing of the suspension with nitrogen at 75° C. for typically 5 to 50 min with microwave power 0 to 20 watts depending on the specific requirements. After washing with DMF the coupling step might be repeated once depending on the specific requirements. The resin was washed with DMF.
The peptides were purified by preparative reversed-phase HPLC. The following column was used: Waters XBridge 30×50 mm 5 um column. Mobile phases consisted of eluent A (5 mM NH4OH in H2O) and eluent B (ACN). Gradients were designed based on the specific requirements of the separation problem. Pure products were lyophilized from ACN/H2O.
In the following the synthesis of a representative example is described.
Peptide 1: AHNGDLKF-NH2
Preparation of A-H(Trt)-N(Trt)-G-D(O-tBu)-L-K(Boc)-F-NH-PS
Fmoc protected Rink-Amide-AM-resin (316 mg, 0.25 mmol) was subjected to solid phase peptide synthesis (SPPS) on the Liberty microwave peptide synthesizer.
Coupling was performed as follows:
1 × 2 min
1 × 4 min
Preparation of Peptide 1
(Cleavage from the Resin with Concomitant Protecting Group Removal then Purification)
A mixture of TFA/H2O/TIPS (95:2.5:2.5) (3 mL, containing 0.2 g DTT) was added to Intermediate (0.25 mmol) and the suspension was shaken at rt for 3 h. The cleavage solution was filtered off and the resin was washed with 95% aq. TFA (1 mL). The combined cleavage and washing solutions were poured onto a mixture of cold diethyl ether (30 mL), giving a precipitate. The suspension was centrifuged and the supernatant poured off. Diethyl ether (30 mL) were added to the residue, the suspension was vortexed for 3 min and centrifuged, and the supernatant was poured off, The wash process was repeated twice. The solid was dried under vacuum The crude was purified by preparative HPLC (gradient: 5-20% B over 3.2 min) and lyophilized from ACN/H2O to afford Example 1 (49 mg, 0.054 mmol). LCMS (Waters Acquity UPLC XBridge C18 3.5 μm 3.0×30 mm, 40° C., Eluent A: Water+5 mM NH4OH, Eluent B: ACN, gradient 5% to 95% B/A over 2 mins): Rentention time: 0.70 mins; measured: [M+H]+=900.8; calculated: [M+H]+=901.0).
Peptides 2 and 3 were synthesized in analogy:
Peptide 2. ALNGDLKF-NH2
LCMS Rentention time: 0.81 mins; measured: [M+H]+=876.8; calculated: [M+H]+=877.0).
Peptide 3. MHNGDHLF-NH2
LCMS Rentention time: 0.68 mins; measured: [M+H]+=969.8; calculated: [M+H]+=970.1).
General NHS Reactivity Assay: (Step b of the Invention)
Sulfo-NHS-LC biotin (5 eq) is added to peptide (0.2 mg/ml) in pH 4 30 mM NaOAc buffer and reaction stands at room temp. After one hour, reaction is quenched with 200 eq hydrazine hydrate and conversion is monitored by LCMS and mapped by MALDI or NMR. The ratio of compounds were estimated based on UV absorption at 214 nm.
SM=starting material
+1=reactivity on N-terminus
+1′=reactivity at lysine
+2=reactivity at both N-terminus and lysine
LCMS Product Rentention time: 1.81 mins; measured: [M+H]+=1239.63; calculated: [M+H]+=1239.6200).
Mapping data (using MALDI LIFT method): Biotin +Alanine: measured [M+H]+=˜411; calculated: [M+H]+=411.21). Biotin +AH: measured [M+H]+=548.27; calculated: [M+H]+=548.27). No Alanine alone mass detected.
LCMS Product Rentention time: 1.29 mins; measured: [M+H]+=876.50; calculated: [M+H]+=877.0). Very little addition (mostly starting material)
LCMS Product Rentention time: 2.05 mins; measured: [M+H]+=1308.5972; calculated: [M+H]+=1308.59).
Mapping data (using MALDI LIFT method): Mapping data (using MALDI LIFT method): Biotin +Methionine: measured [M−H]=470.64; calculated: [M−H]=470.66). No Methionine alone mass detected.
Step 1: Synthesis of A-H-Q-R-P-C-L-S-C-K-G-P-(D-Nle)-Phenethyl amine Intermediate a
Phenethylamine-AMEBA resin (Sigma Aldrich, 0.1 mmol, 1.0 mmol/g) was subjected to solid phase peptide synthesis on an automatic peptide synthesizer (CEM Liberty Blue Microwave) with standard double Arg for the Arg residues and D-Nle coupled double time. Amino acids were prepared as 0.2 M solutions in DMF. A standard coupling cycle was defined as follows:
After the assembly of the peptide, the resin was washed with DMF (2×50 mL) and DCM (2×50 mL) then dried under vacuum to give Intermediate a (276 mg, 0.1 mmol).
Step 2: Preparation of Intermediate b (Cleavage of Peptide from Resin)
Intermediate a (276 mg, 0.1 mmol) was combined with 4 mL TFA solution (37 mL TFA, 1 mL H2O, 1 mL TIPS, 3.06 g DTT) and shaken at r.t. for 3 hours. The solution was removed from the resin and precipitated into 40 mL cold Et2O. The solution was vortexed and let stand over ice for 10 minutes before centrifuging at 4000 rpm for 5 minutes. The solvent was removed and the white solid was washed twice more with cold Et2O (40 mL each time), centrifuged (5 minutes each time) and decanted. The solid was dried under vacuum overnight yielding Intermediate b-batch 1 (17.4 mg, 0.012 mmol). LCMS (SQ2 ProductAnalysis-Acidic-Peptide-Polar, Acquity UPLC BEH C18 column, 130 Å, 1.7 μm, 2.1 mm×50 mm, 50° C.): Rt=1.83 minutes, MS [M+H] 1513.5.
Intermediate b-batch1 and 2 (29.6 mg, 0.020 mmol) was dissolved in water (3 mL) and 10 drops of DMSO to give a slightly cloudy solution. Iodine (50 mM in HOAc, 0.783 mL, 0.039 mmol) was added slowly dropwise and the reaction was mixed at r.t. overnight. LCMS analysis of the crude reaction showed complete conversion of starting material. 0.5 M ascorbic acid was added dropwise until color dissipated. The material was purified via MS-triggered HPLC. Lyophilization of the pooled fractions gave 7 mg of the desired product as a white powder (4.63 μmol, 24%). LCMS (SQ2 ProductAnalysis-Acidic-Peptide, Acquity UPLC BEH C18 column, 130 Å, 1.7 μm, 2.1 mm×50 mm, 50° C.): Rt=0.90 minutes, MS [M+H] 1511.8.
Step 4: Preparation of Intermediate d (NHS/Peptide Reactivity)
Sulfo-NHS-LC-Biotin (Sigma Aldrich, 0.737 mg, 1.324 μmol, 5 eq.) was dissolved in 30 mM pH 4 NaOAc buffer (266 μL) and added to Intermediate c (0.4 mg, 0.265 mmol). The reaction was mixed at r.t. for 16 hours. 33 μL of the reaction mixture was removed and quenched with hydrazine monohydrate (0.6 μL, 200 eq.). Complete conversion of starting material to +1 product was observed by LCMS. Labeling at N-terminal Ala residue was confirmed by digesting the reaction mixture with Trypsin Gold (Promega) according to manufacturer protocol and LCMS analysis. LCMS (SQ2 ProductAnalysis-Acidic-Peptide, Acquity UPLC BEH C18 column, 130 Å, 1.7 μm, 2.1 mm×50 mm, 50° C.): Rt=2.29 minutes, MS [M+2/2] 925.8.
Step 5: Digestion of Intermediate d with Trypsin Gold (N-Terminal Labeling)
A solution of Trypsin Gold (Promega Part#TB309) was prepared in 50 mM acetic acid (1 pg/μL). The crude mixture of Intermediate d (100 μL, 0.081 μmol) was diluted with 50 mM Tris-HCl, 1 mM CaCl2 pH 7.4 (200 μL) to give a 0.5 mg/mL solution. Trypsin Gold (3 μL) was added and the reaction mixed at 37° C. for 16 hours. LCMS analysis indicated that cleavage had occurred at the C-terminal R and K positions of Intermediate d with one addition of biotin on each fragment. LCMS (SQ4 ProductAnalysis-20 min-Acidic-XXPolar, Acquity CSH 1.7 μm 2.1×100 mm, 50° C.): Fragment 1: AHQR+1 biotin Rt=5.92 minutes, MS [M+212] calculated: 425.715, observed: 426.1; Fragment 2: AHQRPCLSCK+1 biotin Rt=11.40 minutes, MS [M+212] calculated:740.345, observed: 740.9, MS [M+3/3] calculated: 493.896, observed: 494.4.
Example of Therapeutic Protein (GDF15): Step a) of the Method of the Invention: Modifying Peptide so that the Resulting Peptide Contains a Histidine at the Position Adjacent to the N-Terminus Amino Acid
Expression of Human GDF-15 Proteins in E. coli Cells
E. coli strains BL21 (DE3) Gold (Stratagene) and Rosetta (DE3) pLysS cells (Novagen) were transformed with constructs of Sequence ID No 1 to 7 and construct MAHA-(200-308)-hGDF15 respectively, cloned into pET26b vectors. Transformed cells were grown under antibiotic selection first in 3 ml and then in 50 ml Luria Broth (Bacto-Tryptone 10 g/L, yeast extract 5 g/L, NaCl 5/L, glucose 6 g/L) until an OD600 of 1.5 was reached. The pre-cultures were used to inoculate two 1-L fermenters filled with Terrific Broth medium (NH4SO4 1.2 g/L, H2PO4 0.041 g/L, K2HPO4 0.052 g/L, Bacto-Tryptone 12 g/L, Yeast Extract 24 g/L). The cultures were induced by automatic addition of 1 mM isopropyl-beta-D-thiogalactopyranoside (IPTG) when pH increased above 7.1. Other fermentation parameters were: temp=37° C.; pH 7.0+/−0.2 adjusted by addition of 2N NaOH/H2SO4; pO2>30% with cascades of stirrer speed, air flow and oxygen addition. Five hours post induction the cultures were cooled to 10° C. and cells were harvested by centrifugation.
Purification and Refolding of GDF15 Variants
a) Inclusion Bodies
Recombinant E. coli pellets expressing the protein of interest were resuspended (5% w/v) in 50 mM NaH2PO4/150 mM NaCl/5 mM benzamidine.HCl/5 mM DTT, pH 8.0 at 4° C., homogenized and lysed by 2 passages through a French press (800 and 80 bar). Inclusion bodies (IBs) were isolated by centrifugation at 12,000 rpm for 60 min at 4° C.
b) Purification of Crude Unfolded Protein
IBs were solubilized (5% w/v) in 6 M guanidine/100 mM NaH2PO4/10 mM Tris/20 mM beta-mercaptoethanol, pH 8.0 and stirred for 2 hours at room temperature. Debris was removed by centrifugation at 12,000 rpm. The solubilized IBs were further purified on Ni-NTA-Superflow (the construct without His tag binds as well to this resin due to the high histidine content). After base-line washing with 6 M guanidine/100 mM NaH2PO4/10 mM Tris/5 mM beta-mercaptoethanol, pH 8.0, bound material was eluted with the same buffer adjusted to pH 4.5. The eluate was adjusted to pH 8.0, 100 mM DTT was added and the solution stirred over night at 4° C. The pH was then adjusted to 2 by addition of trifluoroacetic acid (TFA, 10% stock in water) and the solution further diluted 1:1 with 0.1% TFA in water. The crude protein solution was further purified by RP-HPLC (Poros) using a gradient of 0-50% acetonitrile in 50 min. The GDF-15 containing fractions were pooled and lyophilized.
c) Protein Folding
Method 1: Lyophilized material was dissolved at 2 mg/ml in 100 mM acetic acid, diluted 15-20 folds in folding buffer (100 mM CHES/1 M NaCl/30 mM CHAPS/5 mM GSH/0.5 mM GSSG/20% DMSO, pH 9.5, 4° C.) and the solution gently stirred during 3 days at 4° C. After 3 days 3 volumes of 100 mM acetic acid was added and the solution concentrated by ultrafiltration (5 kDa cut-off) to about 100-200 ml, diluted 10 fold with 100 mM acetic acid and re-concentrated. The refolded material was further purified by preparative RP-HPLC on a Vydac C4 column run at 50° C. (buffer A: 0.1% TFA in water; buffer B: 0.05% TFA in acetonitrile). After loading the column was washed with 15% buffer B and eluted with a gradient of 15% B to 65% B in 50 min. Collected fractions containing the protein of interest were diluted with an equal volume of buffer A and lyophilized. Refolding yields were about 25% for both proteins.
Method 2: Protocol followed as in method 1 with folding buffer: 100 mM CHES, pH 9.4, 0.9 M arginine, 0.5 M NaCl, 1 mM EDTA, 2.5 mM GSH, 1 mM GSSG (final concentration).
The following GDF15 mutants were prepared according to above procedure:
M-(His)6-hGDF15
LCMS: Calculated mass: 26462 Observed Mass: 26464
MH-(199-308)-hGDF15
LCMS: Calculated mass: 24636 Observed Mass: 24638
M-(His)6-M-hGDF15
LCMS: Calculated mass: 26724 Observed Mass: 26725
M-(His)6-cynoGDF15
LCMS: Calculated mass (dimer): 26664 Observed Mass: 26665
His-dGDF15:
LCMS: Calculated mass (dimer): 26368 Observed Mass: 26363
AH-(199-308)-hGDF15
Step 1: preparation of construct M-His6-TEV(ENLYFQ/A)-H-hsGDF15 aa199-308 The construct M-His6-TEV(ENLYFQ/A)-H-hsGDF15 aa199-308 was prepared according to the above procedure (steps a, b and c).
Step 2: TEV cleavage of the protein from step 1
The lyophilized protein was solubilized in water to a final concentration of 1.75 mg/ml. The protein was unfolded again by diluting 1:1 in 6M Guan/50 mM Tris, pH 8.0+50 mM DTT, and stirred at RT for 1 h. The material was re-purified by preparative RP-HPLC on a Vydac C4 column and lyophilized. 26 mg of lyophilisate were solubilized in 26 ml 50 mM Tris/3M UREA, pH 7.5+3000 Units AcTEV Protease (Invitrogen, 12575-023) and incubated for 4 days. The pH was then adjusted to pH 2.0 by addition of trifluoroacetic acid (TFA, 10% stock in water) and the solution further diluted to 150 ml with 0.1% TFA in water. After filtration through a 0.22 um membrane the material was again purified by preparative RP-HPLC on a Vydac C4 column to isolate successfully cleaved protein. Fractions were collected manually; target protein-containing fractions were isolated and lyophilized. The cleaved GDF15 protein was then refolded and refolded protein purified as described above.
LCMS: Calculated mass (dimer): 24516 Observed Mass:24518
The following GDF15 mutants is prepared according to the above procedure:
MHA-(200-308)-hGDF15
LCMS: Calculated mass (dimer): 24752
The following GDF15 mutants was prepared according to the above procedure:
AHA-(200-308)-hGDF15
LCMS: Calculated mass(dimer): 24430; Observed mass (dimer): 24432
Site Specific Conjugation of MH-(199-308)GDF15 with a Fatty Acid Acylating Agent
Step 1: Preparation of the Fatty Acid-Linker Acylating Agent:
Step 1a: 1-Benzyl 3-tert-butyl 2-undecylmalonate
To a suspension of NaH (160 mg, 4.0 mmol) in DMF (8 mL) at 0° C. under N2, was added benzyl tert-butyl malonate (1.0 g, 4.0 mmol) in DMF (2 mL). The mixture was stirred for 50 min after which 1-bromoundecane in DMF (2 mL) was added. After an additional hour of stirring the reaction was allowed to warm to room temperature. The reaction was maintained overnight. Et2O (100 mL) and water (20 mL) were added to partition the reaction. The aqueous phase was extracted with Et2O (100 mL), and the combined organics dried over Na2SO4. The solvent was evaporated and the residue purified by flash column (C18 12 g, 40-100% ACN/water+0.1% TFA) to yield the title compound as a colorless oil (1.14 g, 2.82 mmol, 71%): LCMS Method A Rt=1.58 min, M+Na 427.4; 1H NMR (400 MHz, CHLOROFORM-d) δ ppm 0.84-0.96 (m, 3H) 1.28 (br. s, 12H) 1.31 (m, J=3.90 Hz, 6H) 1.41 (s, 9H) 1.88 (q, J=7.38 Hz, 2H) 3.29 (t, J=7.58 Hz, 1H) 5.19 (q, J=12.27 Hz, 2H) 7.30-7.42 (m, 5H).
Step 1 b: 1,11-Dibenzyl 11-tert-butyl docosane-1,11,11-tricarboxylate
A solution of I-1 (650 mg, 1.61 mmol) in DMF (1 mL) was slowly added to a suspension of NaH (70.7 mg, 1.77 mmoL) in DMF (6 mL) at 0° C. under N2. The mixture was stirred for 40 min before the addition of benzyl 11-bromoundecanoate (571 mg, 1.61 mmol) in DMF (1 mL). Upon addition the reaction was allowed to warm to room temperature and stirred overnight. The reaction was diluted with Et2O (100 mL) and extracted with water (20 mL). The aqueous phase was extracted with Et2O (100 mL), and the combined organics dried over Na2SO4. The solvent was evaporated. The residue was purified by flash column (silica 80 g, 0-10% EtOAc/HEP) to yield 1-2 as a colorless oil (823 mg, 1.21 mmol, 75%): 1H NMR (400 MHz, CHLOROFORM-d) δ ppm 0.84-0.94 (m, 3H) 1.12 (m, J=6.60 Hz, 4H) 1.19-1.33 (m, 28H) 1.35 (s, 9H) 1.66 (quin, J=7.40 Hz, 2H) 1.85 (t, J=8.44 Hz, 4H) 2.37 (t, J=7.52 Hz, 2H) 5.14 (s, 2H) 5.16 (s, 2H) 7.30-7.42 (m, 10H).
Step 1c: 13-(Benzyloxy)-2-((benzyloxy)carbonyl)-13-oxo-2-undecyltridecanoic acid
To a solution of intermediate I-2 (200 mg, 0.295 mmol) in DCM (3 mL) was added TFA (0.6 mL), and the reaction stirred at room temperature for 3 hrs. The solvent was evaporated and the residue purified by flash column (silica 12 g, 0-15% EtOAc/HEP) to yield the title compound (177 mg, 0.284 mmol, 96%): 1H NMR (400 MHz, CHLOROFORM-d) δ ppm 0.87-0.94 (m, 3H) 0.94-1.05 (m, 2H) 1.19 (br. s., 14H) 1.23-1.37 (m, 16H) 1.65 (quin, J=7.40 Hz, 2H) 1.78-1.91 (m, 2H) 1.93-2.05 (m, 2H) 2.37 (t, J=7.52 Hz, 2H) 5.14 (s, 2H) 5.27 (s, 2H) 7.31-7.44 (m, 10H).
Step 1 d: 1,11-Dibenzyl 11-(2,5-dioxocyclopentyl) docosane-1,11,11-tricarboxylate
A solution of DCC (58.6 mg, 0.284 mmol) in DCM (1 mL) was added to a solution of 1-3 (177 mg, 0.284 mmol) and N-hydroxysuccinimide (32.7 mg, 0.284 mmol) in DCM (2 mL) and THF (0.3 mL) under N2. The reaction was stirred at room temperature for 4 hr. The solvent was evaporated and the residue purified by flash column (silica 12 g, 0-35% EtOAc/HEP) to yield 1-4 as a colorless oil (153 mg, 0.213 mmol, 75%): 1H NMR (400 MHz, CHLOROFORM-d) δ ppm 0.86-0.93 (m, 3H) 1.12-1.21 (m, 2H) 1.21-1.37 (m, 30H) 1.66 (quin, J=7.40 Hz, 2H) 1.89-2.07 (m, 4H) 2.37 (t, J=7.58 Hz, 2H) 2.84 (br. s., 4H) 5.13 (s, 2H) 5.25 (s, 2H) 7.30-7.47 (m, 10H).
Step 1e: Fatty Acid-Linker Construct (Intermediate 5)
A solution of intermediate I-4 (145 mg, 0.201 mmol) in THF (1.5 mL) and DCM (1.5 mL) was added to a vial charged with amino-PEG24-acid. DIPEA (884, 0.504 mmol) was added and the reaction agitated on a shaker plate for 15 hrs. The solvent was evaporated and the residue purified by supercritical fluid chromatography (Waters HILIC 20×150 mm; 15-25% MeOH/CO2) to yield intermediate I-5 (151 mg, 0.086 mmol, 43%): LCMS Method C Rt=1.30 min, [M+2H]+2 876.4; 1H NMR (400 MHz, CHLOROFORM-d) δ ppm 0.86-0.93 (m, 3H) 0.93-1.04 (m, 2H) 1.19 (br. s., 15H) 1.23-1.37 (m, 15H) 1.61-1.68 (m, 2H) 1.78 (td, J=12.44, 4.34 Hz, 2H) 1.92-2.05 (m, 2H) 2.37 (t, J=7.58 Hz, 2H) 2.62 (t, J=6.05 Hz, 2H) 3.49 (dd, J=6.72, 2.32 Hz, 2H) 3.52-3.59 (m, 2H) 3.59-3.73 (m, 92H) 3.80 (t, J=6.05 Hz, 2H) 5.13 (s, 2H) 5.18 (s, 2H) 7.31-7.42 (m, 10H) 8.09 (t, J=5.26 Hz, 1H).
Step 1f: Intermediate 6
DCC (22 mg, 0.103 mmol) in DCM (0.265 mL) was added to a solution of intermediate I-5 (150 mg, 0.086 mmol) and N-hydroxysuccinimide in DCM (1.5 mL). The reaction was stirred for 1.5 hrs. Additional N-hydroxysuccinimide (10 mg) in THF (0.5 mL) and DCC (22 mg) in DCM (0.265 mL) was added and the reaction stirred overnight. The solvent was evaporated and the residue purified by flash column (silica 12, 0-5% MeOH/DCM) to yield intermediate I-6 (159 mg, quantitative) as a white solid: LCMS Method A Rt=1.55 min, [M+H3O+H]+2 933.9.
Step 1g: Fatty Acid-Linker Acylating Agent (Intermediate 7)
To a solution of intermediate I-6 (159 mg, 0.086 mmol) in THF (5 mL) was added a suspension of 10% Pd on carbon (4.6 mg, 4.3 μmol) in THF (1 mL). The reaction was placed under hydrogen and stirred for 40 min. More Pd on carbon (7 mg, 6.5 μmol) was added and then stirred another 1 hr under hydrogen. The reaction was passed through a membrane filter and the filtrate evaporated. The residue was purified by HPLC (Sunfire C18 30×50 mm, 45-70% ACN/water+0.1% TFA) to yield the title fatty acid-linker acylating agent (83 mg, 0.047 mmol, 54%): LCMS Method A Rt=1.03 min, [M+2H]+2 835.2; 1H NMR (400 MHz, CHLOROFORM-d) δ ppm 0.84-0.94 (m, 3H) 1.17 (br. s., 2H) 1.21-1.39 (m, 30H) 1.57-1.68 (m, 2H) 1.69-1.80 (m, 2H) 1.97-2.10 (m, 2H) 2.34 (t, J=7.21 Hz, 2H) 2.86 (s, 4H) 2.92 (t, J=6.48 Hz, 2H) 3.51-3.73 (m, 96H) 3.87 (t, J=6.48 Hz, 2H) 7.45 (t, J=4.46 Hz, 1H)
MH-(199-308)-hGDF15 (0.393 mL, 0.028 μmol, 1.78 mg/mL) was added to 1.5 ml of 30 mM sodium acetate buffer pH 4 NHS fatty acid (I-7: 474 ug, 0.284 umol, 10 mg/ml) was added to solution. After 5 hours, reaction was complete according to MALDI. Products were purified by washing 5 times using amicon ultrafiltration 10 kD to give 575 ug of conjugate in 73% yield. MALDI: sm (18%), expected mass: 24638 observed mass: 24735; +1 fatty acid (38%) expected mass: 26192 observed mass: 26268; +2 fatty acid (40%) expected mass: 27746 observed mass: 27798; +3 fatty acid (4%) expected mass: 29300 observed mass: 29333.
M-(His)6-hGDF15 (0.493 ml, 0.026 μmol, 1.42 mg/ml) was added to 1.5 ml of 30 mM sodium acetate buffer NHS fatty acid (1-7; 0.221 mg, 0.132 umol, 10 mg/mL) was added to the solution. Overnight the reaction was not complete so 2.5 more equivalents of fatty acid NHS (0.110 mg, 0.066 umol, 10 mg/mL) were added and after 5 hrs Maldi showed +2 conjugate as major product. Product was purified by washing 5 times using amicon ultrafiltration 10 kD to give 565 ug of conjugate in 76% yield. MALDI: sm (18%), expected mass: 26468 observed mass: 26553; +1 fatty acid (38%) expected mass: 28022 observed mass: 28099; +2 fatty acid (40%) expected mass: 29576 observed mass: 29649; +3 fatty acid (4%) expected mass: 31130 observed mass: 31201.
AH-GDF15+1-7:
Sequence (monomer):
ahngdhcplgpgrccrlhtvrasledlgwadwvlsprevqvtmcigacpsqfraanmhaqiktslhnkpdtvpapccvpasynpm vliqktdtgyslqtyddllakdchci
A 10 mg/mL solution of fatty acid 1-7 was prepared in H2O. AH-hGDF15 (1.12 mg/mL, 175 μL, 0.0080 μmol) was combined with 202 μL 30 mM NaOAc buffer pH 4.0 and aliquot of 1-7 (13.33 μL) was added. The reaction was mixed at r.t. for 16 hours at which point MALDI analysis showed 30% conversion of starting material. An additional 6.67 μL aliquot of 1-7 was added and the reaction mixed for 16 hours and 13.33 μL aliquot of 1-7 was added. After 16 hours of mixing at r.t. 1-7 (13.33 μL) was added and the reaction mixed at r.t. for 3 days. A 13.33 μL aliquot of I-7 was added and the reaction mixed at r.t. for 16 hours at which point MALDI analysis indicated >95% conversion. The solution was exchanged into 30 mM NaOAc buffer pH 4.0 using 10 kDa MWCO Amicon centrifugal filter by diluting and concentrating the reaction 5 times to a volume of 0.2 mL. The concentration was measured by A280 (30040 M-1 cm-1; 26072 g/mol) to be 0.31 mg/mL, 30%.
A 10 mg/mL solution of fatty acid (Intermediate 7) in molecular biology grade water was prepared. To AHA-hGDF15 (6.67 mg/mL in 30 mM NaOAc pH 4.0, 5.247 mL, 1.433 μmol) was added 30 mM NaOAc pH 4.6 (acceptable range 4.5-5.0) to give a final protein concentration of 0.88 mg/mL. Intermediate 7 (10 eq., 2.39 mL, 0.014 mmol) was added and the reaction was mixed at r.t. for 18 hours. Precipitate had formed in the reaction vial. The reaction mixture was split amongst 4×15 mL 10 kDa Amicon centrifugal filters and each was diluted to 15 mL with 30 mM NaOAc pH 4.0. The material was buffer exchanged 4× into 30 mM NaOAc pH 4.0 and samples were combined to a volume of 25.6 mL, agitating the precipitate in the filter with a pipette tip in between washes. Precipitate remained in solution so the mixture was let sit at 4° C. overnight. Concentration was measured by A280 (30040 cm−1 M−1, 27538 g/mol) to be 1.62 mg/mL (100%). UPLC analysis showed 60% recovery of +1 and +2 products (Method F).
Purification:
The crude product was purified by reverse phase chromatography (Buffer A 0.1% TFA in water; Buffer B 0.1M TFA in ACN gradient; 99%-80% Buffer A) on a Waters BEH300 130 Å, 3.5 μm, 4.6 mm×100 mm flow rate 2.5 ml/min.
Fraction 1: Unreacted AHA-hGDF15: Rt=17.33 min
Fraction 2: AHA-GDF15+1FA: Rt=20.20 min (approximately 15% yield)
Fraction 3: AHA-GDF15+2FA: Rt=21.60 min (approximately 15% yield)
Fraction 4: AHA-GDF15+3 FA: Rt=23.0 min (approximately 5% yield)
Alternatively the reaction may be carried out in 10 mM Na2HPO4-7H2O and 30 mM NaOAc at a pH of 4.73: A 10 mg/mL solution of Intermediate 7 in molecular biology grade water was prepared. To AHA-hGDF15 (12.04 mg/mL in 30 mM NaOAc pH 4.0, 4.15 μL, 0.002 μmol) was added 30 mM NaOAc 10 mM Na2HPO4.7H2O pH 4.73 to give a final protein concentration of 0.88 mg/mL. Intermediate 7 (20 eq., 6.83 μL, 0.041 μmol) was added and the reaction was mixed at r.t. for 18 hours. The reaction mixture had turned cloudy with precipitate. UPLC analysis showed 58% +1 and +2 products (Method F).
The reaction may also be carried out in 30 mM NaOAc and 10 mM K2HPO4 at a pH of 4.6: A 10 mg/mL solution of intermediate 7 in molecular biology grade water was prepared. To AHA-hGDF15 (6.21 mg/mL in 30 mM NaOAc pH 4.0, 5.261 mL, 1.337 μmol) was added 30 mM NaOAc 10 mM K2HPO4 pH 4.6 (acceptable range 4.5-5.0) to give a final protein concentration of 0.88 mg/mL. Intermediate 7 (10 eq., 68.3 μL, 0.409 μmol) was added and the reaction was mixed at r.t. for 7 hours. The reaction mixture had turned cloudy with precipitate. The reaction mixture was split into four 9 mL portions in 15 mL 10 kDa Amicon centrifugal filter and diluted to 15 mL with 30 mM NaOAc pH 4.0. The material was buffer exchanged 4× into 30 mM NaOAc pH 4.0, agitating the precipitate between each wash with a pipette tip. The reaction mixture was concentrated to a volume of 75 mL. Precipitate remained so the material was stored at 4° C. for two days. Concentration was measured by A280 (30040 cm−1 M−1, 27538 g/mol) to be 0.4 mg/mL (97%). UPLC analysis showed 61% recovery of +1 and +2 products (Method F).
To a solution of MHHHHHHM-hGDF15 (0.53 mg/mL, 8 mL) in 30 mM NaOAc pH 4 sodium acetate buffer was added a solution of NHS ester (1.5 mg/mL in pH 4 30 mM NaOAc buffer) in the following amount sequentially in every two hours, 118 uL, 177 uL. The mixture was concentrate/washed using amicon concentrator (3 times) with pH 4 NaOAc buffer, and the cartridge was repeatedly washed to achieve high recovery of protein. 5.8 mL 0.64 mg/mL product was obtained. LCMS: Expected (+1): 27066, Observed (+1): 27066; Expected (+2): 27406, Observed (+2):27405.
Biotinylation confirmed 90% at N-terminus using Glu-C digestion and mapping.
The biotinylated GDF15 sample should yield a 339 da mass shifted GluC peptide.
N-terminal GluC digestion product of chemically biotinylated GDF15. Sequence: LC-biotin-M(His)6MARNGDHCPLGPGRCCRLHTVRASLE. Calculated monoisotopic mass with 3 cysteine alkylations=4311.9755 Da M 3+ charge +1 calc.=1438.3325 Observed mass=1438.3331.
His-hGDF15+Biotin-PEG24-NHS ester:
A 10 mg/mL solution of biotin-PEG24-NHS (Biomatrik, Inc.) in 30 mM pH4 NaOAc was prepared. MHHHHHH-hGDF15 (1.007 mL, 0.054 μmol) was combined with 30 mM NaOAc pH 4 (1.5 mL) and biotin-PEG24-NHS (Biomatrik, Inc., 397 μL, 2.70 μmol). The mixture was shaken at r.t. for 16 hours at which point an additional 10 equivalents (79.4 μL) of NHS solution was added and the reaction was mixed at r.t. for 16 hours. An additional 10 equivalents (79.4 μL) of NHS solution was added and the reaction mixed at r.t. for 16 hours. The reaction was heated to 37° C. and stirred for 10 hours at which point the mixture was exchanged into 30 mM NaOAc pH 4 using 10 kDa MWCO Amicon centrifugal filter by diluting and concentrating the sample 5 times to a volume of 2 mL. LCMS analysis indicated the presence of starting material, +1 and +2 products. The concentration was measured by A280 (29090 M−1 cm−1, 27818 g/mol) to be 1.20 mg/mL (100%). LCMS Method D: Rt=2.48 min; MS [M+1+1 biotin], [M+1+2 biotin]: observed: 27818.0000, 29174.0000, calculated: 27823.7, 29179.4.
His-hGDF15+Sulfo-NHS-Biotin:
A 10 mg/mL solution of sulfo-NHS-biotin (ThermoFisher) in 30 mM pH 4 NaOAc was prepared. His-hGDF15 B 8 (100 μL, 0.0076 μmol) was combined with 30 mM NaOAc pH 4 (293.3 μL) and sulfo-NHS-biotin (ThermoFisher, 6.70 μL, 0.151 μmol). The mixture was shaken at r.t. for 16 hours. The mixture was exchanged into 30 mM NaOAc pH 4 using 10 kDa MWCO Amicon centrifugal filter by diluting and concentrating the sample 5 times to a volume of 150 μL. LCMS analysis indicated the presence of starting material, +1 and +2 products. The concentration was measured by A280 (29090 M−1 cm−1, 26917 g/mol) to be 1.08 mg/mL (80%). LCMS Method E: R1=5.05 min; MS [M+1+1 biotin] observed: 26690, calculated: 26692, [M+1+2 biotin]: observed: 26918, calculated: 26920, [M+1+3 biotin]: observed: 27143, calculated: 27148.
His-hGDF15
A stock solution of His-hGDF15 (0.6 mL, 4.8 mg/mL) was diluted to 0.5 mg/mL with 30 mM NaOAc pH 4.5 buffer (5.2 mL). A 10 mg/mL stock solution of (1R,8S,9S)-bicyclo[6.1.0]non-4-yn-9-ylmethyl (2,5-dioxopyrrolidin-1-yl) carbonate (NHS—BCN) in DMSO (251 μL) was slowly added and the reaction placed on a shaker plate at 24° C. for 21 hrs. The reaction was diluted to 30 mL with 30 mM NaOAc pH 4.5 buffer and concentrated to 2 mL using a 10 kDa MWCO ultrafiltration cartridge (repeat 4×) to yield 2.5 mL of concentrate. Based on A280 (ε=29090M−1 cm−1, 26730 g/mol) the concentrate was 0.93 mg/mL (2.33 mg, 80%): LCMS QT2_15-60 kDa_15 min_polar
His-hGDF15 Seq:
A stock solution of His-hGDF1 (7.04 mL, 1.42 mg/mL) was diluted to 0.5 mg/mL with 30 mM NaOAc pH 4.5 buffer (12.95 mL). A 10 mg/mL stock solution of (1R,8S,9s)-bicyclo[6.1.0]non-4-yn-9-ylmethyl (2,5-dioxopyrrolidin-1-yl) carbonate (NHS—BCN) in DMSO (0.88 mL) was slowly added and the reaction placed on a shaker plate at 24° C. for 24 hrs. An additional portion of the NHS—BCN stock solution (1764) was added, and the reaction maintained at 24° C. for 24 hrs. The reaction was diluted to 60 mL with 30 mM NaOAc pH 4.5 buffer and concentrated to 4 mL using a 10 kDa MWCO ultrafiltration cartridge (repeat 4×) to yield 4.1 mL of concentrate. Based on A280 (ε=29090M−1 cm−1, 26700 g/mol) the concentrate was 2.19 mg/mL (8.98 mg, 89%): LCMS QT2_15-60 kDa_15 min_polar
Step 1: Preparation of the Fluorophore-Linker Acylating Agent (I-8)
To a solution of Alexafluor647-NHS ester (Life Technologies, 5 mg, 4.00 μmol) in PBS (1 mL) was added azido-dPEG23-amine (Quanta Biodesign cat #10525, 4.84 mg, 4.4 μmol). The reaction was mixed at r.t. for 6.5 hours at which point an additional 0.25 equivalents of azido-dPEG23-amine (1 mg) was added with two drops of DIPEA. The reaction was mixed at r.t. for 16 hours. Complete conversion was observed by LCMS analysis. The mixture was used in the next step without further purification. LCMS Method E: Rt=1.73 min; MS [M+H/3]: observed: 646.1, calculated: 655.3.
Step 2: Further Derivatization of the his-hGDF15-BCN Construct (Example 10) with a Fluorophore Agent (I-8)
His-hGDF15-AF647:
To a solution of His-hGDF15-BCN (500 μL, 2.19 mg/mL, 0.041 μmol) was added a solution of 1 (20.55 μL, 7.86 mg/mL, 0.082 μol). The reaction was mixed at r.t. for 2 days at which point 75% conversion was observed by LCMS analysis. The mixture was exchanged into PBS using 10 kDa MWCO Amicon centrifugal filter by diluting and concentrating the sample 8 times to a volume of 2.25 mL. The concentration was measured by A280 (29090 M-1 cm-1, 28600 g/mol) to be 0.32 mg/mL (60%). LCMS Method B: R1=6.19 min; MS [M+H+1AF647]: observed 28580.0000, calculated: 28609.336.
To a solution of His-hGDF15 (1.12 mg/mL, 200 uL) was added a solution of NODA-GA-NHS, HPF6, TFA salt (CheMatech Cat # C098) (20 uL, 10 mg/mL), and the mixture was stirred at r.t. for 2 days. Partial conversion (50% of +1) was observed by LC-MS analysis. 200 uL pH4 NaOAc buffer and 20 uL NODA-GA-NHS solution was added and the mixture was stirred at r.t. for 2 more days. About 70% conversion to +1 and +2 was observed by LC-MS analysis. More NODA-GA-NHS solution (20 uL) was added and the mixture was stirred at r.t. overnight. About 80% conversion to +1 and +2 was observed by LC-MS analysis. The mixture was washed with Amicon 10k 4 times to give 150 uL 0.40 mg/mL solution.
Step 1: Preparation of the Toxin Construct
To a solution of maleimide MMAF (Concortis) (1.57 mg, 1.2 eq) in DMSO (130 uL) was added a solution of 2-AMINO-N-(3-AZIDOPROPYL)-3-MERCAPTOPROPIONAMIDE (0.2 mg, 1 eq) in 72.7 uL DMSO, and DIPEA (1 uL, 6 eq), and the mixture is stirred at r.t. for 1 h. Partial conversion is observed by LC-MS analysis. More azide cystein (100 uL) was added. Reaction stirred three days.
Scale up: 1.7 mg maleimide MMAF (Concortis) (in 200 uL DMSO) was added to cys-N3 (130 uL+100 uL) and DIPEA (2 uL) and reaction stirred over three days.
Both mixtures were combined and purified by Sunfire C18 eluting with 10-90% ACN/wather (0.1% TFA) (rt=1.15 min) to give 2.9 mg clean product in 92% yield.
Step 2: Site Specific Conjugation of BCN to his-cynoGDF15 (Corresponding to Step b of the Instant Invention)
To his-cynoGDF15 (B1, 150 uL, 0.87 mg/mL) was added pH 4 buffer (450 uL) and NHS—BCN (Berry and associates cat # LK4320) in DMSO (10 mg/mL, 4.12 uL) and the mixture was stirred at 4 C over weekend. 60% conversion was evident after 1 day at 4 C, at which time 7 eq NHS—BCN in DMSO (10 mg/ml, 4.12 ul) was added. After another 24 hrs at 4 C, 13 eq NHS—BCN (10 mg/mL in DMSO, 8 ul) were added and reaction incubated at rt 4 hs. Partial conversion was observed. The mixture was incubated at r.t. for another 4 hr. Complete conversion was observed and the mixture was diluted to 15 mL and washed/concentrated via Amicon 10K cartridge 4 times to give 7 mL 0.60 mg/mL solution (4.2 mg) in 88% yield. LCMS: +1 mass expected: 26844, mass observed: 26842; +2 mass expected: 27024 mass observed:27020.
Step 3: Further Modification of the Conjugate Construct
To BCN-GDF15 (7 mL, 0.6 mg/mL) was added Azido-MMAF (200 uL, 7.25 mg/mL in DMSO) and the mixture was stirred at r.t. over three days followed by 30° C. for 2 days. About 70% conversion to mono- and bis-modified product was obtained. The product was washed with Amicon 10k to give 4.7 mL of 1 mg/mL product in pH 4 30 mM sodium acetate in quantitative yield. Maldi: sm (25%) calculated mass: (+1) 26844 (+2) 27024 observed mass: (+1) 26699; +1 toxin (50%) calculated mass: 28377 observed mass: (+1) 28525; +2 toxin (25%) calculated mass: 30088 observed mass: 29910.
General Scheme:
Step 1: Synthesis of NH2-AzidoLys-GGGGS-Q-R-P-C-L-S-C-K-G-P-DNle-Phenethylamine
Intermediate 14
Phenethylamine-AMEBA resin (Sigma Aldrich, 0.25 mmol, 1.0 mmol/g) was subjected to solid phase peptide synthesis on an automatic peptide synthesizer (CEM Liberty Blue Microwave) with standard double Arg for the Arg residues and Dnle and Azidolysine coupled double time. Amino acids were prepared as 0.2 M solution in DMF. A standard coupling cycle was defined as follows:
After the assembly of the peptide, the resin was washed with DMF (2×50 mL) and DCM (2×50 mL) then dried under vacuum to give Intermediate 14a (770 mg, 0.250 mmol).
Step 2: Preparation of Intermediate 14b (Cleavage of Peptide from Resin)
Intermediate 14a (770 mg, 0.250 mmol) was divided in half and each sample was combined with 6 mL TFA solution (37 mL TFA, 1 mL H2O, 1 mL TIPS, 2.569 g (20 eq.) DTT) and shaken at r.t. for 3 hours. The solution was removed from the resin and precipitated into 40 mL cold Et2O. The solution was vortexed and let stand over ice for 10 minutes before centrifuging at 4000 rpm for 5 minutes. The solvent was removed and the white solid was washed twice more with cold Et2O (40 mL each time), centrifuged (5 minutes each time) and decanted. The solid was dried under vacuum overnight and purified via M-triggered HPLC yielding Intermediate 14b as a white powder (80 mg, 0.045 mmol, 80%). LCMS (SQ2 ProductAnalysis-Acidic-Peptide-Polar, Acquity UPLC BEH C18 column, 130 Å, 1.7 μm, 2.1 mm×50 mm, 50° C.): Rt=2.32 minutes, MS [M+H+2/2] 888.0.
Step 3: Preparation of Intermediate 14c (Cyclization of Cysteine Residues)
Intermediate 14b (80 mg, 0.045 mmol) was dissolved in water (1.25 mL) and iodine (50 mM in HOAc, 1.804 mL, 0.090 mmol) was added slowly dropwise and the reaction was mixed at r.t. for 3 hours. LCMS analysis of the crude reaction showed complete conversion of starting material. 0.5 M ascorbic acid was added dropwise until color dissipated. The material was purified via MS-triggered HPLC. Lyophilization of the pooled fractions gave 20.1 mg of the desired product as a white powder (0.045 mmol, 25%). LCMS (SQ2 ProductAnalysis-Acidic-Peptide-Polar, Acquity UPLC BEH C18 column, 130 Å, 1.7 μm, 2.1 mm×50 mm, 50° C.): Rt=2.17 minutes, MS [M+H+2/2] 886.8.
Step 4: Preparation of Fc-AH Construct
AH-Fc Construct Cloning:
The DNA fragment shown below was generated by standard PCR techniques using the vector pPL1146 containing the mouse Ig Kappa signal sequence followed by the human Fc downstream of a CMV promoter, as a template. A forward primer (5′-GCT TGC TAG CCA CCA TGG AAA CTG-3′) was designed that contains a NheI site followed by sequences corresponding to the 5′ end of the signal sequence contained in vector pPL1146. A reverse primer (5′-GTT GAT TGA ATT CTT AGA AGC ACA TGG GGC CCT TGT GGC ACA GCC GGG GCC GCT GGC TTC CGC CAC CTC CGC TGC CTC CAC CGC CGC TGC CTC CGC CAC CTG CGC CTG GAC TCA GAG ACA GGG-3′) was designed to contain a EcoRI site, Apelin sequence, a glycine serine linker and sequence complementary to the 3′ end of the human Fc contained in pPL1146. Following amplification, the fragment was restriction digested with both NheI and EcoRI, isolated and purified from an agarose gel, and ligated into vector pPL1146 digested and purified in the same manner. The ligations were transformed into E. coli DH5□ cells and colonies containing the correct plasmids were identified by DNA sequencing. Sequences shown are for the sense strand and run in the 5′- to 3′-direction.
Nucleotide Sequence
AH-Fc Protein Expression and Purification:
AH-Fc expression plasmid DNA was transfected into HEK293T cells at a density of 1×106 cells per ml using standard polyethylenimine methods. 500 ml cultures were then grown in FreeStyle 293 Medium (Life Technologies) in 3 L flasks for 4 days at 37° C.
AH-Fc protein was purified from clarified conditioned media. Briefly 500 ml of conditioned media was flowed over a 5 ml HiTrap MabSelect SuRe column (GE Life Sciences) at 4 ml/min. The column was washed with 20 column volumes of PBS containing 0.1% Triton X-114 and then the Fc-AH protein was eluted with 0.1 M glycine, pH 2.7, neutralized with 1 M Tris-HCl, pH 9 and dialyzed against PBS. Protein yields were 10 to 20 mg per 500 ml conditioned media and endotoxin levels were <1 EU/mg as measured by the Charles River ENDOSAFE PTS test.
The protein was characterized by LC/MS of the reduced, N-deglycosylated AH-Fc proteins. The molecular weight for Fc-AH was as expected.
LC/MS of native AH-Fc protein: Peaks were heterogeneous and about 3 kDa larger than expected for dimers. This is characteristic of N-linked glycosylation expected for Fc which has a consensus N-linked glycosylation site.
Analytical size exclusion on Superdex 200: AH-Fc protein have between 89 and 100% dimer, 0 to 10% tetramer, and 0 to 1% aggregate.
Reducing SDS/PAGE: protein migrated as predominately monomers of the expected size.
Step 5: Preparation of AH-Fc BCN (Installation of Click Handle on Fc-HA N-Terminus)
AH-Fc Sequence:
AH-Fc (from step 4: 1 mL, 3 mg/mL, 0.117 μmol) was dissolved in 30 mM NaOAc pH 4.0 (4.3 mL) and a 10 mg/mL stock solution of (1R,8S,9s)-bicyclo[6.1.0]non-4-yn-9-ylmethyl (2,5-dioxopyrrolidin-1-yl) carbonate (BCN) in DMSO (0.70 mL) was slowly added and the reaction placed on a shaker plate at r.t. for 3 days. BCN (0.25 mL) was added and the reaction was mixed at r.t. for 3 days. BCN (0.70 mL) was added and the reaction was mixed at r.t. for 16 hours. The solution was exchanged into 30 mM NaOAc pH 4.0 using 10 kDa MWCO Amicon centrifugal filter by diluting and concentrating the reaction 5 times to a volume of 900 μL. The solution was centrifuged and supernatant removed. The concentration was measured by A280 to be 1.73 mg/mL (1.56 mg, 26%). LCMS (QT2, Protein_20-70 kDa_3 min, Proswift Monolith 4.6×50 mm, 50° C., Eluent A: Water+0.1% Formic Acid, Eluent B: CAN+0.1% Formic Acid, 2-98% over 2 min) Rt=1.58 min.
Step 6: Fc-HA-BCN+Intermediate 14c (Conjugation of CNM Peptide to Fc)
A 50 mg/mL stock solution of intermediate 14c in H2O was prepared. Intermediate 14c (53.7 μL, 1.515 μmol) was added to a stock solution of Fc-HA-BCN in 30 mM NaOAc pH 4.0 (1.73 mg/mL, 1.56 mg, 0.030 μmol) and the reaction was mixed at r.t. for 16 hours. The solution was exchanged into 30 mM NaOAc pH 4.0 using 50 kDa MWCO Amicon centrifugal filter by diluting and concentrating the reaction 5 times to a volume of 250 μL. The concentration was measured by A280 to be 3.32 mg/mL (830 μg, 50%). LCMS (QT2, Protein_35-70 kDa_3 min, Proswift Monolith 4.6×50 mm, 50° C., Eluent A: Water+0.1% Formic Acid, Eluent B: CAN+0.1% Formic Acid, 10-80% B over 2 min) Rt=1.43 min, MS [M(glycosylated)+H] 54524.5.
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/US2015/036330 | 6/18/2015 | WO | 00 |
| Number | Date | Country | |
|---|---|---|---|
| 62082337 | Nov 2014 | US | |
| 62015868 | Jun 2014 | US |
