The present description relates to steroid acid-based hydrogels and methods of production thereof. More specifically, the present description relates to steroid acid-peptide conjugates for the formation of a hydrogel.
Hydrogels, or hydrophilic gels, are cross-linked polymer networks that are able to swell and retain a significant amount of water within its structure, but that does not dissolve in water. Hydrogels are commonly used in various industries and have a wide variety of applications such as in cosmetics (e.g., hygienic products), agriculture, pharmaceuticals and therapeutics (e.g., drug delivery systems), biomedical applications, food additives, and mining (e.g., coal dewatering). Novel hydrogels that are easy to produce and cost-effective, as well as low-cost and streamlined methods for producing hydrogels, would be highly desirable.
In a first aspect, described herein is a method of forming/producing a hydrogel, the method comprising resuspending/dissolving a peptide covalently conjugated to one or more steroid acid moieties in a solvent until a hydrogel is formed.
In further aspects, described herein is a method of forming/producing a hydrogel, the method comprising providing a peptide to be modified, covalently conjugating the peptide to one or more steroid acid moieties to produce a steroid acid-peptide conjugate, and resuspending/dissolving the steroid acid-peptide conjugate in an solvent until a hydrogel is formed.
A method of forming/producing a hydrogel, the method comprising resuspending/dissolving a peptide in a steroid acid solution, or mixing a steroid acid and peptide in a solvent, until a hydrogel is formed.
In further aspects, described herein is a hydrogel formed/produced by the method described herein.
In further aspects, described herein is a hydrogel comprising the steroid acid-peptide conjugate as defined herein.
In further aspects, described herein is a steroid acid-peptide conjugate, which is the steroid acid-conjugate as defined herein, for use in the production/formation of a hydrogel.
In further aspects, described herein is a use of the steroid acid-conjugate as defined herein, for the production/formation of a hydrogel.
In further aspects, described herein is a steroid acid-peptide conjugate comprising lithocholic acid (LCA), cholic acid (CA), glycochenodeoxycholic acid (GCDCA), glycodeoxycholic acid (GDCA), or glycoursodeoxycholic acid (GUDCA) conjugated to a nuclear localisation signal (NLS) from heterogeneous nuclear ribonucleoprotein (hnRNP) A1 M9 protein, for use in the production/formation of a hydrogel.
In further aspects, described herein is a hydrogel produced/formed by conjugating lithocholic acid (LCA), cholic acid (CA), glycochenodeoxycholic acid (GCDCA), glycodeoxycholic acid (GDCA), or glycoursodeoxycholic acid (GUDCA) to a nuclear localisation signal (NLS) from heterogeneous nuclear ribonucleoprotein (hnRNP) A1 M9 protein.
In further aspects, described herein is a hydrogel comprising a steroid acid-peptide conjugate, wherein the steroid acid-peptide conjugate is or comprises lithocholic acid (LCA), cholic acid (CA), glycochenodeoxycholic acid (GCDCA), glycodeoxycholic acid (GDCA), or glycoursodeoxycholic acid (GUDCA) conjugated to a nuclear localisation signal (NLS) from heterogeneous nuclear ribonucleoprotein (hnRNP) A1 M9 protein.
Headings, and other identifiers, e.g., (a), (b), (i), (ii), etc., are presented merely for ease of reading the specification and claims. The use of headings or other identifiers in the specification or claims does not necessarily require the steps or elements be performed in alphabetical or numerical order or the order in which they are presented.
The use of the word “a” or “an” when used in conjunction with the term “comprising” in the claims and/or the specification may mean “one” but it is also consistent with the meaning of “one or more”, “at least one”, and “one or more than one”.
As used in this specification and claim(s), the words “comprising” (and any form of comprising, such as “comprise” and “comprises”), “having” (and any form of having, such as “have” and “has”), “including” (and any form of including, such as “includes” and “include”) or “containing” (and any form of containing, such as “contains” and “contain”) are inclusive or open-ended and do not exclude additional, unrecited elements or method steps.
The term “about” is used to indicate that a value includes the standard deviation of error for the device or method being employed in order to determine the value. In general, the terminology “about” is meant to designate a possible variation of up to 10%. Therefore, a variation of 1, 2, 3, 4, 5, 6, 7, 8, 9 and 10% of a value is included in the term “about”. Unless indicated otherwise, use of the term “about” before a range applies to both ends of the range.
Other objects, advantages and features of the present description will become more apparent upon reading of the following non-restrictive description of specific embodiments thereof, given by way of example only with reference to the accompanying drawings.
In the appended drawings:
This application contains a Sequence Listing in computer readable form created Aug. 27, 2022. The computer readable form is incorporated herein by reference.
Described herein are hydrogels and methods relating to producing or forming hydrogels by dissolving or resuspending a steroid acid-peptide conjugate in a solvent. In some aspects, the present invention stems from the demonstration herein that conjugating a peptide (e.g., a peptide comprising nuclear localisation signal [NLS]) to a steroid acid moiety triggers hydrogel formation.
In a first aspect, described herein is a method for producing or forming hydrogels. The method generally comprises selecting/providing a suitable peptide to be modified, and covalently conjugating the peptide to one or more steroid acid moieties to produce a steroid acid-peptide conjugate. In some embodiments, the peptide is conjugated to a number of steroid acid moieties sufficient to improve or promote hydrogel formation.
In some aspects, the method described herein comprises resuspending or dissolving a suitable steroid acid-peptide conjugate in a solvent until a hydrogel is formed. In some embodiments, the concentration of the steroid acid-peptide conjugate dissolved in the solvent or comprised in the hydrogel is at least 0.001, 0.01, 0.1, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100 mg/mL.
In some aspects, the method described herein comprises resuspending or dissolving a suitable peptide in a steroid acid solution until a hydrogel is formed. In some aspects, the peptide and steroid acid spontaneously form a cross-linking polymer network in situ. In some aspects, the peptide and steroid acid are simultaneously or separately added to a solvent.
As used herein, “hydrogel”, or hydrophilic gels, are hydrophilic cross-linked polymer networks that are highly absorbent. The hydrogel defined herein may be of any structure, size, weight, or shape. In some cases, the hydrogel may be one complete hydrogel structure. In some cases, the hydrogel comprises several smaller hydrogel structures. In some cases, the hydrogel is a gelatinous precipitate, or any hydrophilic gel that is opaque or translucent. In some cases, the hydrogel comprises or consists of hydrogel droplets.
In some aspects, the hydrogel described herein is formed or produced spontaneously upon resuspension or dissolution of the peptide and the steroid acid or steroid acid-peptide conjugate in the solvent. In some aspects, the hydrogel described herein is formed or produced instantly upon resuspension or dissolution of the peptide and steroid acid or steroid acid-peptide conjugate in the solvent. In some aspects, the hydrogel is formed or produced at least 1, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, or 60 seconds after resuspension/dissolution of the peptide and steroid acid or steroid acid-peptide conjugate in the solvent. In some aspects, the hydrogel is formed or produced at least 1, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 120, 180, 240, 300, or 360 minutes after resuspension/dissolution of the peptide and steroid acid or steroid acid-peptide conjugate in the solvent. In some aspects, the hydrogel is formed or produced at least 6, 8, 10, 12, 14, 16, 18, 20, 22, or 24 hours after resuspension/dissolution of the peptide and steroid acid or steroid acid-peptide conjugate in the solvent.
As used herein, “peptide” refers to a chain of amino acids of any length, but generally between 7 and 50 amino acids long. In some embodiments, the peptide may comprise one or more synthetic or non-natural amino acids, or modified amino acids. In some embodiments, the peptide is or comprises an NLS or a portion/domain from a polypeptide or an NLS.
As used herein, “solvent” refers to any solution. In some embodiments, the solution or solvent may be an aqueous solution or solvent which comprises water. In some aspects, the solvent is any commonly known buffered solutions. In some cases, solvent is 100% water. The solvent may also be a saline solution, such as but not limited to phosphate buffered saline (PBS) or Tris buffered saline (TBS). The solvent may be a DMSO-water mixture or alcohol-water mixture (e.g., methanol in water) at any ratio. In some aspects, the solvent is not an aqueous solvent (e.g., 100% DMSO). The solvent may be at any pH. In some aspects, the pH of the aqueous solvent is substantially neutral. In some aspects, the pH of the solvent is 6.5, 6.6, 6.7, 6.8, 6.9, 7.0, 7.1, 7.2, 7.3, 7.4, or 7.5.
In some embodiments, the peptides described herein may comprise (or may be engineered to comprise) between 1 to 50, 2 to 50, 5 to 50, or 10 to 50 functional groups (e.g., lysine and/or cysteine residues; or any other group) available for conjugation to the steroid acid moieties described herein. In some embodiments, the peptide antigen may comprise an amino acid sequence that is at least 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or 50 amino acids in length. In some embodiments, the peptide is conjugated to the steroid acid at solvent-accessible amine (e.g., primary amine) and/or sulfhydryl groups of the peptide. In some embodiments, the peptide is conjugated to the steroid acid via a linker (e.g., bifunctional, trifunctional linker, or multi-functional linker) or at any other chemical or functional group present on or engineered into the peptide. In some embodiments, the peptide is conjugated to the steroid acid-peptide conjugate via an N-terminal or C-terminal cysteine residue. In some embodiments, the peptide comprises a C-terminal amide.
In some embodiments, a steroid acid suitable for conjugation to a peptide described herein comprises or consists of a bile acid (e.g., a primary bile acid or a secondary bile acid). In some embodiments, the steroid acid may be or comprise: cholic acid (CA), chenodeoxycholic acid (CDCA), deoxycholic acid (DCA), lithocholic acid (LCA), glycocholic acid (GCA), taurocholic acid (TCA), glycodeoxycholic acid (CDCA), glycochenodeoxycholic acid (GCDCA), taurodeoxycholic acid (TDCA), glycolithocholic acid (GLCA), taurolithocholic acid (TLCA), taurohyodeoxycholic acid (THDCA), taurochenodeoxycholic acid (TCDCA), ursocholic acid (UCA), tauroursodeoxycholic acid (TUDCA), glycoursodeoxycholic acid (GUDCA), ursodeoxycholic acid (UDCA), or any analog thereof. In some embodiments, the steroid acids described herein are selected from
In some embodiments, the average number of steroid acid moieties per peptide may be, for example, based on the type of steroid acid and/or type of peptide selected (e.g., amino acid length, structure, number of available functional groups). In some embodiments, the peptide may be reacted with a molar excess of steroid acid or steroid acid-peptide moieties to maximize the number of steroid acid moieties conjugated. In some embodiments, the peptide may be reacted with a limiting amount of steroid acid or steroid acid-peptide moieties to control or limit the number of steroid acid moieties conjugated. In some embodiments, each peptide molecule may be conjugated to at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or 50 steroid acid moieties.
In some embodiments, the steroid acids described herein may be comprised in a steroid acid-peptide moiety. In some embodiments, the steroid acid may be pre-conjugated to the peptide, for example at a free N-terminal amino group of the peptide or at some other functional group within the peptide. In some embodiments, the polypeptide antigen may then be conjugated to the steroid acid-peptide moiety via the peptide, such as at an N-terminal cysteine residue of the peptide.
In some embodiments, the peptide may be a non-immunogenic peptide. In some embodiments, the peptide may be a water-soluble peptide, wherein conjugation of the peptide to the steroid acid increases the water solubility of the steroid acid-peptide moiety as compared to the steroid acid moiety alone. In some embodiments, the peptide may be water-insoluble. In some embodiments, the peptide may be a cationic, anionic, or uncharged peptide
In some embodiments, the peptide may comprise one or more domains that impart an additional functionality to the modified polypeptide antigen. As used herein, a “domain” generally refers to apart of a protein having a particular functionality. Some domains conserve their function when separated from the rest of the protein, and thus can be used in a modular fashion. The modular characteristic of many protein domains can provide flexibility in terms of their placement within the peptides described herein. However, some domains may perform better when engineered at certain positions of the peptide (e.g., at the N- or C-terminal region, or therebetween). The position of the domain within its endogenous protein may be an indicator of where the domain should be engineered within the peptide.
In some embodiments, the peptide may comprise a protein transduction domain (PTD) that stimulates endocytosis, endosomal formation, or intracellular delivery in a non-cell-specific manner. In some embodiments, the peptide may comprise a subcellular targeting signal promoting targeting of the modified polypeptide antigen to a specific subcellular compartment. In some embodiments, the peptide may comprise a nuclear localization signal (NLS) that targets the modified polypeptide antigen to the nucleus. In some embodiments, the nuclear localization signals described herein may comprise or be derived from the NLS from SV-40 large T-antigen (e.g., PKKKRKV; SEQ ID NO: 7) or from other classical NLSs. In some embodiments, the nuclear localization signals described herein may comprise or be derived from non-classical NLS (e.g., acidic M9 domain in the hnRNP A1 protein; the sequence KIPIK in yeast transcription repressor Matα2; PY-NLS; ribosomal NLS; or the complex signals of U snRNPs), a hydrophobic PY-NLS, or a basic PY-NLS.
In some embodiments, the nuclear localization signals described herein may comprise the general consensus sequence: (i) K(K/R)X(K/R); (ii) (K/R)(K/R)X10-12(K/R)3/5, wherein (K/R)3/5 represents three lysine or arginine residues out of five consecutive amino acids; (iii) KRX10-12KRRK; (iv) KRX10-12K(K/R)(K/R); or (v) KRX10-12K(K/R)X(K/R), wherein X is any amino acid (Sun et al., 2016).
In some embodiments, the peptide described herein is or comprises a nuclear localisation signal which is an NLS from simian vacuolating virus 40 (SV40) large T-antigen, GWG-SV40NLS, NLS2 from ribosomal protein S17 (RPS17), NLS1 from RPS17, NLS3 from RPS17, NLS2 RG RSP17, nucleoplasmin NLS, acidic M9 domain in the heterogeneous nuclear ribonucleoprotein (hnRNP) A1 protein, hnRNPA1 M9 NLS, hnRNP D NLS, hnRNP M NLS, HuR NLS, cMyc NLS, TUS NLS, polyglutamine-binding protein 1 (PQBP1) NLS, the sequence KIPIK in yeast transcription repressor Matα2, PY-NLS, ribosomal NLS, the complex signals of U snRNPs, or any portion of the NLS thereof.
In some embodiments, the peptide is or comprises a nuclear localisation signal (NLS) comprising an amino acid sequence that at least 70%, 75%, 80%, 85%, 90%, 95%, 99%, or 100% identical to any one of SEQ ID NOs: 1-15 or the sequences as described in
In some embodiments, the steroid acid-peptide conjugates described herein are selected from
In some embodiments, the peptide described herein is or comprises Mellitin (SEQ ID NO: 16).
In some embodiments, the steroid acid-peptide conjugate described herein is a monomer or dimer.
In some embodiments, the method for producing/forming the hydrogel described herein further comprises dimerizing the steroid acid-peptide conjugate. Dimerization techniques are commonly known and may include the addition of Diisopropylethylamine (DIPEA) or any other compound/solvent capable of inducing dimerization of peptides.
In some aspects, the peptide, steroid acid or a salt thereof, or steroid acid-peptide conjugate is in solid form, such as a powder or is lyophilized. In some aspects, the final concentration of the steroid acid/peptide mixture or steroid acid-peptide conjugate resuspended/dissolved in the solvent is at least 0.001, 0.01, 0.1, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100 mg/mL.
In some aspects, described herein is a hydrogel formed or produced by the methods described herein.
In some aspects, described herein is a hydrogel comprising the steroid acid-peptide conjugate or steroid acid and peptide mixture defined herein.
In some aspects, described herein is a hydrogel produced/formed by conjugating lithocholic acid (LCA), cholic acid (CA), glycochenodeoxycholic acid (GCDCA), glycodeoxycholic acid (GDCA), or glycoursodeoxycholic acid (GUDCA) to a nuclear localisation signal (NLS) from heterogeneous nuclear ribonucleoprotein (hnRNP) A1 M9 protein to form a conjugate and dissolving/resuspending said conjugate in an solvent.
In some aspects, described herein is a hydrogel comprising a steroid acid-peptide conjugate, wherein the steroid acid-peptide conjugate is or comprises lithocholic acid (LCA), cholic acid (CA), glycochenodeoxycholic acid (GCDCA), glycodeoxycholic acid (GDCA), or glycoursodeoxycholic acid (GUDCA) conjugated to a nuclear localisation signal (NLS) from heterogeneous nuclear ribonucleoprotein (hnRNP) A1 M9 protein.
In some aspects, described herein is a steroid acid-peptide conjugate comprising lithocholic acid (LCA), cholic acid (CA), glycochenodeoxycholic acid (GCDCA), glycodeoxycholic acid (GDCA), or glycoursodeoxycholic acid (GUDCA) conjugated to a nuclear localisation signal (NLS) from heterogeneous nuclear ribonucleoprotein (hnRNP) A1 M9 protein, for use in the production/formation of a hydrogel.
In some aspects, described herein is a steroid acid-peptide conjugate, which is the steroid acid-conjugate as described herein, for use in the production/formation of a hydrogel.
In some aspects, described herein is a use of the steroid acid-conjugate as described herein, for the production/formation of a hydrogel.
Steroid acid-peptide conjugates were synthesized similar to the synthesis of cholic acid-NLS (CA-NLS) as previously described in Beaudoin et al., 2016; U.S. Pat. No. 11,291,717; and PCT/CA2022/050714. For example, for CA-SV40NLS, cholic acid was conjugated to the free amino group of the N-terminal cysteine residue of a 13-mer peptide (CGYGPKKKRKVGG; SEQ ID NO: 1) that comprises a nuclear localization signal from SV40 large T-antigen (SEQ ID NO: 2) flanked by linker amino acids and comprising a C-terminal amide. A list of the tested peptides and steroid acid-peptide conjugates for hydrogel formation is found in
50 mg of steroid acid-peptide conjugate was resuspended in 200-500 μL of DMSO. 10 eq of N,N-Diisopropylethylamine (DIPEA) was added to the mixture and incubated in a thermomixer at 37° C. with agitation (1000 rpm) overnight, enabling dimerization of the peptides via their terminal cysteine thiol groups. The samples were then photographed to visually document hydrogel formation and subsequently analyzed by UPLC-MS to evaluate dimer formation efficiency. Sample were then further analyzed by light microscopy to characterize the hydrogel materials, and cell toxicity was evaluated via a Cell Toxicity assay (PrestoBlue™). CA-melittin hydrogel was observed to be a more semi-liquid-solid hydrogel (very viscous solution).
Specific hydrogel formation was conducted by resuspending the powder of each steroid acid-peptide monomer or dimer conjugate in phosphate buffered saline (PBS) 1X (pH 7.4), pure water, complete cell medium (DMEM), DMSO, or alcohol:water mixtuLes (e.g., methanol:water (40:60)) at room temperature or 37° C. at a concentration between 6-30 mg/mL.
5000 JIMT1 cells (breast cancer cell line) per well (96-well plate) were plated. After one day, cells were treated with the different steroid acid-peptide conjugates or hydrogels for three days. Cell survival was determined by PrestoBlue™ following the manufacturer's protocol.
Hydrogel formation was evaluated upon dissolution of the different peptide or steroid acid-peptide conjugates described in
Other steroid acid-peptide monomer conjugates tested in
With regards to other solvents tested, a hydrogel was formed when GUDCA-hnRNPA1 NLS monomer was dissolved in pure water at 20 mg/mL after 1 h and up to 3 h at room temperature (
These data demonstrate the surprising result that different steroid acid-hnRNPA1 NLS monomer conjugates spontaneously form a hydrogel when dissolved in various solvents at different temperatures and concentrations.
Hydrogel formation was observed for dimerized steroid acid-peptide conjugates, surprisingly in even steroid acid-peptide conjugates that did not form a hydrogel as monomers. Dimerization was performed as described in Example 1.
Dimerized CDCA-hnRNPA1 M9 NLS maintained its ability to form a hydrogel. Light microscopy images of the hydrogels formed by CDCA-hnRNPA1 M9 NLS dimers are shown in
Interestingly, CA-NLS1 RPS17 was not observed to form a hydrogel in its monomer form, yet was able to form a hydrogel in its dimerized form in multiple solvents (
All steroid acid-peptide conjugates were able to form hydrogels spontaneously following their dimerization reactions (in 100% DMSO). However, addition of water or aqueous solvent consistently enhanced hydrogel formation. Furthermore, dimer-based hydrogels were formed in the presence of different solvents, such as methanol, DMSO, and water.
The peptide melittin is not typically considered as an NLS peptide, but has been shown to exhibit nuclear localization activity (Ogris et al., 2001). Interestingly, monomers of CA-Melittin (SEQ ID NO: 16) were not able to form a hydrogel, but dimerized CA-Melittin was able to form a hydrogel having a softer texture than those formed by other steroid acid-peptide conjugates. Light microscopy images of the hydrogels formed by dimerization of CA-Mellitin are shown in
Hydrogels are commonly used for drug delivery and in vivo applications, and therefore assessing their safety profiles is highly pertinent. Cytotoxicity of hydrogels was evaluated via a cytotoxicity assay by incubating cells with hydrogels formed by monomers or steroid acid-peptide conjugates, as described in Example 1. As shown in
These data demonstrate the reduced toxicity of hydrogels formed by dimerized steroid acid-peptide conjugates for potential in vivo applications.
Filing Document | Filing Date | Country | Kind |
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PCT/CA2022/051298 | 8/26/2022 | WO |
Number | Date | Country | |
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63260648 | Aug 2021 | US |