Patent Application
20200386741
The present application is filed with a Sequence Listing in electronic format. The Sequence Listing is provided as a file entitled “2018-11-09_01178-0003-00US_Seq_List_ST25 txt” created on Nov. 9, 2018, which is 56,062 bytes in size. The information in the electronic format of the sequence listing is incorporated herein by reference in its entirety.
The present invention relates to an inhibitor of the expression of an inflammation promoting factor; a method for screening for an active ingredient of the inhibitor; an expression cassette useful for the method; a diagnostic agent and a diagnosis method both for immune diseases, inflammatory diseases, painful diseases and the like; and others.
There are great many patients who are suffering from diseases of which the symptoms can be developed or worsened by an inflammation promoting factor (e.g., IL-6 and COX-2), such as an immune disease, an inflammatory disease and a painful disease. For example, with respect to rheumatoid arthritis which is a major immune disease, it is estimated that there are about 700,000 patients in Japan and there are about 70,000,000 patients worldwide. With respect to arthrosis which is one of inflammatory diseases, it is estimated that there are about 15,600,000 patients even in Japan. With respect to osteoarthritis of the knee which is considered to be major arthrosis, it is estimated that there are about 10,000,000 patients in Japan. With respect to low back pain which is a major painful disease, it is estimated that there are about 24,000,000 patients even in Japan. The number of patients of these diseases tends to increase year by year as the population ages. It is believed that this phenomenon would be caused in Japan where the population aging rate is highest in the world, as well as in all of countries where the population aging would advance in the future due to the improvement in living environments, dietary habits and nutrition conditions, the advance in medical technologies and the like. By detecting these diseases in earlier stages, it becomes possible to start a proper treatment, prevent the increase in severity of the diseases and, as a result, keep the QOL of patients at higher levels. Therefore, it has been a socially important demand to study about therapeutic agents for the diseases and tools for developing the therapeutic agents and to develop diagnostic agents and diagnosis methods for the diseases.
In these situations, the relationship between the post-transcriptional regulation of inflammation promoting factor mRNA and the above-mentioned diseases has been obvious recently. It is suggested that the regulation of the degradation of mRNA for an inflammation promoting factor can be a factor that can determine the sustainability of an inflammatory response. Therefore, it is believed that a factor associated with the degradation or stabilization of an inflammation promoting factor at mRNA level is involved in the onset or chronicity of an immune disease, an inflammatory disease and a painful disease. For example, Non-Patent Document 1 discloses that Tristetraprolin (TTP) and Regnase-1 are involved in the degradation of IL-6 mRNA. Non-Patent Document 2 discloses that Arid5a can regulate the stability of IL-6 mRNA. It has been elucidated that the abnormalities of these factors play an important role in the mechanism of onset or worsening of the diseases, including the acceleration of inflammations. For these reasons, a factor that affects the expression amount/level of an inflammation promoting factor can become a target of therapeutic agents for the diseases, and a novel discovery about the factor has been demanded. On the other hand, a diagnostic agent and a diagnosis method whereby it becomes possible to diagnose as to the presence or absence of the above-mentioned diseases or the degree of progression of the diseases by measuring the amount/level of a substance capable of affecting the expression amount/level of an inflammation promoting factor in a cell, blood or the like from a patient are very useful. Therefore, a novel discovery about the factor has been demanded.
RNA-binding motif, single-stranded-interacting protein 2 (RBMS2) is a protein that is believed to have two RNA-binding domains on the N-terminal side. However, it is not reported yet that the functions of the protein are actually analyzed, and the functions of the protein are not elucidated yet.
Non-Patent Document 1: Inflammation and Regeneration, Vol. 33, No. 1, January 2013, pp 54-65.
Non-Patent Document 2: PNAS, Jun. 4, 2013, vol. 110, no. 23, pp 9409-9414
The present invention addresses the problem of: discovering a novel factor that can affect the expression amount/level of an inflammation promoting factor; providing an inhibitor of the expression of an inflammation promoting factor and a tool for developing the inhibitor on the basis of the discovering the factor; and providing a diagnostic agent and a diagnosis method both for immune diseases, inflammatory diseases, painful diseases and other diseases.
The present inventors have made extensive and intensive studies for the purpose of solving the problem. As a result, it is found that RBMS2 is involved in the post-transcriptional regulation of mRNA molecules of various inflammation promoting factors. It is also found that there is a positive correlation between the expression of RBMS2 and the expression of an inflammation promoting factor in diseases which can be developed or worsened by an inflammation promoting factor. On the basis of these findings, it is also found that an inflammation promoting factor can be inhibited and the above-mentioned diseases can be prevented or treated by inhibiting the expression or function of RBMS2, and that these diseases can be diagnosed by employing the expression amount/level of RBMS2 as an index. The studies are further pursued on the basis of these findings. As a result, the present invention has been accomplished. That is, the present invention includes the following aspects.
1. An expression cassette containing a RBMS2 gene expression regulation region and a gene arranged in such a manner that the expression thereof can be regulated by the region.
2. The expression cassette according to item 1, wherein the gene is a reporter gene.
3. A vector carrying an expression cassette as recited in item 1 or 2.
4. A cell harboring a vector as recited in item 3.
5. A reagent for screening for an active ingredient for an inhibitor of the expression of an inflammation promoting factor, containing at least one component selected from the group consisting of an expression cassette containing a RBMS2 gene expression regulation region and a gene arranged in such a manner that the expression thereof can be regulated by the region, a vector carrying the expression cassette and a cell harboring the vector.
6. A method for screening for a substance capable of inhibiting the expression or function of RBMS2 by employing at least one item selected from the group consisting of items (i) to (iii) as an index in the presence of a test substance:
(i) the expression amount/level of a gene of which the expression can be regulated by a RBMS2 gene expression regulation region;
(ii) the binding amount/level of RBMS2 to RNA containing an AU-rich element; and
(iii) the amount/level of mRNA containing an AU-rich element in a 3′-UTR thereof or the amount/level of a protein derived from the mRNA in a RBMS2-overexpressing cell.
7. The screening method according to item 6, wherein, when the value of the index in the presence of a test substance is smaller than the value of the index in the absence of the test substance, the test substance is selected as a substance capable of inhibiting the expression or function of RBMS2.
8. The screening method according to item 6 or 7, wherein the AU-rich element is an AU-rich element derived from at least one member of mRNA selected from the group consisting of IL-6 mRNA, COX-2 mRNA, IL-8 mRNA, IL-1β mRNA, TNF-α mRNA, MMP1 mRNA, IL-24 mRNA and c-Myc mRNA.
9. The screening method according to any one of items 6 to 8, wherein a substance capable of inhibiting the expression or function of RBMS2 is selected as an active ingredient for an inhibitor of the expression of an inflammation promoting factor or a candidate for the active ingredient.
10. The screening method according to any one of items 6 to 9, wherein the method includes steps (a1) to (c1):
(a1) bringing an expression system which contains an expression cassette containing a RBMS2 gene expression regulation region and a gene arranged in such a manner that the expression thereof can be regulated by the region into contact with a test substance;
(b1) measuring, as an expression amount/level of interest, the amount/level of the gene expressed in the expression system that has been contacted with the test substance and then comparing the expression amount/level of interest with a control expression amount/level that is the expression amount/level of the gene in an expression system that has not been contacted with the test substance; and
(c1) selecting the test substance as a substance capable of inhibiting the expression of RBMS2 when the expression amount/level of interest is smaller than the control expression amount/level.
11. The screening method according to item 10, wherein the expression system is a cell.
12. The screening method according to item 10 or 11, wherein the gene is a reporter gene.
13. The screening method according to any one of items 6 to 9, wherein the method includes steps (a2) to (c2):
(a2) bringing RNA containing an AU-rich element into contact with RBMS2 in the presence of a test substance;
(b2) measuring the binding amount/level between the RNA and the RBMS2 which are contacted with each other in the presence of a test substance as a binding amount/level of interest, and then comparing the binding amount/level of interest with a control binding amount/level that is the binding amount/level between the RNA and the RBMS2 which are contacted with each other in the absence of the test substance; and
(c2) selecting the test substance as a substance capable of inhibiting the function of RBMS2 when the binding amount/level of interest is smaller than the control binding amount/level.
14. The screening method according to item 13, wherein the method for measuring the binding amount/level is an immunoprecipitation method or a gel shift method.
15. The screening method according to any one of items 6 to 9, wherein the method includes steps (a3) to (c3):
(a3) bringing a cell which contains mRNA containing an AU-rich element in a 3′-UTR thereof and in which RBMS2 is overexpressed into contact with a test substance;
(b3) measuring the amount/level of the mRNA or a protein derived from the mRNA in the cell that has been contacted with the test substance as an amount/level of interest, and then comparing the amount/level of interest with a control amount/level that is the amount/level of the mRNA or a protein derived from the mRNA in a cell that is not contacted with the test substance; and
(c3) selecting the test substance as a substance capable of inhibiting the function of RBMS2 when the amount/level of interest is smaller than the control amount/level.
16. The screening method according to item 15, wherein the mRNA contains an ORF of a reporter protein.
17. An inhibitor of the expression of an inflammation promoting factor containing at least one component selected from the group consisting of a RBMS2 expression inhibitor and a RBMS2 function inhibitor.
18. The inhibitor of the expression of an inflammation promoting factor according to item 17, wherein the inhibitor contains a RBMS2 expression inhibitor.
19. The inhibitor of the expression of an inflammation promoting factor according to item 18, wherein the RBMS2 expression inhibitor contains at least one RBMS2 expression inhibitor selected from the group consisting of RBMS2-specific siRNA, RBMS2-specific miRNA, a RBMS2-specific antisense nucleic acid and expression vectors for these components.
20. The inhibitor of the expression of an inflammation promoting factor according to item 18, wherein the RBMS2 expression inhibitor is IL-10.
21. The inhibitor of the expression of an inflammation promoting factor according to any one of items 17 to 20, wherein the inflammation promoting factor of which the expression is to be inhibited is at least one component selected from the group consisting of IL-6, COX-2, IL-8, IL-1β, TNF-α, MMP1, IL-24 and c-Myc.
22. The inhibitor of the expression of an inflammation promoting factor according to any one of items 17 to 21, wherein the inhibitor is used as a prophylactic or therapeutic agent for at least one disease selected from the group consisting of immune diseases, inflammatory diseases and painful diseases.
23. The inhibitor of the expression of an inflammation promoting factor according to any one of items 17 to 22, wherein the inhibitor is used as a prophylactic or therapeutic agent for at least one disease selected from the group consisting of autoimmune diseases, rheumatic diseases, rheumatoid arthritis, degenerative arthritis disease, arthritis, sepsis, lymphoproliferative diseases, demyelinating diseases in the central nervous system, spondyloarthropathy, inflammatory pain, postoperative pain and allergic diseases.
24. A diagnostic agent for a disease which can be developed or worsened by an inflammation promoting factor, which contains a RBMS2 gene expression product detecting agent.
25. The diagnostic agent according to item 24, wherein the disease is a disease which can be developed or worsened by an inflammation promoting factor.
26. The diagnostic agent according to item 24 or 25, wherein the disease is at least one disease selected from the group consisting of immune diseases, inflammatory diseases and painful diseases.
27. The diagnostic agent according to item 25 or 26, wherein the inflammation promoting factor is at least one component selected from the group consisting of IL-6, COX-2, IL-1β, IL-8, TNF-α, MMP1, IL-24 and c-Myc.
28. The diagnostic agent according to any one of items 24 to 27, wherein the RBMS2 gene expression product detecting agent is a probe or a primer for RBMS2 mRNA or a nucleic acid derived from the RBMS2 mRNA or an antibody capable of recognizing RBMS2 protein.
29. The diagnostic agent according to any one of items 24 to 28, wherein the disease that is a disease to be diagnosed is at least one disease selected from the group consisting of autoimmune diseases, rheumatic disease, rheumatoid arthritis, degenerative arthritis diseases, arthritis, sepsis, lymphoproliferative diseases, demyelinating diseases in the central nervous system, spondyloarthropathy, inflammatory pain, postoperative pain and allergic diseases.
30. The diagnostic agent according to item 29, wherein the disease that is a disease to be diagnosed is rheumatoid arthritis.
31. The diagnostic agent according to any one of items 24 to 30, wherein the item to be diagnosed is the presence or absence of the disease.
32. The diagnostic agent according to any one of items 24 to 30, wherein the item to be diagnosed is the degree of progression of the disease.
33. A method for detecting an immune disease, an inflammatory disease or a painful disease, comprising the steps of:
(a1) measuring the expression amount/level of interest of a RBMS2 gene expression product in a sample collected from a subject; and
(b1) comparing the expression amount/level of interest measured in step (a1) with a control expression amount/level of the RBMS2 gene expression product in a sample collected from a control subject which does not suffer from any one of the immune disease, the inflammatory disease and the painful disease,
wherein
(c1) the matter that the expression amount/level of interest is larger than the control expression amount/level is employed as an index for the determination that the subject has the immune disease, the inflammatory disease or the painful disease.
34. A method for determining the degree of progression of an immune disease, an inflammatory disease or a painful disease, comprising the steps of:
(a2) measuring the expression amount/level of interest of a RBMS2 gene expression product in a sample collected from a subject suffering from the immune disease, the inflammatory disease or the painful disease; and
(b2) comparing the expression amount/level of interest measured in step (a2) with a control expression amount/level of a RBMS2 gene expression product in a sample collected from a control subject suffering from the immune disease, the inflammatory disease or the painful disease,
wherein
(c3) the matter that the expression amount/level of interest is larger than the control expression amount/level is employed as an index for the determination that the subject has a higher degree of progression of the immune disease, the inflammatory disease or the painful disease than that of the control subject.
35. The method according to item 33 or 34, wherein the sample to be used in each of step (a1) and step (a2) is a blood sample.
36. The method according to any one of items 33 to 35, wherein the sample to be used in each of step (a1) and step (a2) is a blood cell component in a blood sample.
37. The method according to any one of items 33 to 36, wherein the immune disease, the inflammatory disease and the painful disease can be developed or can be worsened by at least one component selected from the group consisting of IL-6, COX-2, IL-1β, IL-8, TNF-α, MMP1, IL-24 and c-Myc.
38. The method according to any one of items 33 to 37, wherein the expression amount/level of interest of the RBMS2 gene expression product and the control expression amount/level are measured using a probe or primer directed against RBMS2 mRNA or a nucleic acid derived from the RBMS2 mRNA or an antibody capable of recognizing RBMS2 protein.
According to the present invention, it becomes possible to provide a novel inhibitor of the expression of an inflammation promoting factor, a novel prophylactic or therapeutic agent for an immune disease, an inflammatory disease, a painful disease or the like, and a tool for developing the inhibitor or the prophylactic or therapeutic agent (e.g., a method for screening for an active ingredient, an expression cassette useful for the method), all of which utilize a novel target factor that affects the expression amount/level of an inflammation promoting factor. According to the present invention, it also becomes possible to provide a diagnostic agent and a diagnosis method for an immune disease, an inflammatory disease, a painful disease or the like, which rely on a novel mechanism.
1. Definitions
The wordings “contain” and “comprise” as used herein include all of the concepts of “contain”, “comprise”, “substantially consisting of” and “consisting only of”.
The amino acid sequence “identity” refers to the degree of amino acid sequence agreement between at least two amino acid sequences that can be compared with each other. Therefore, the identity or similarity of two amino acid sequences becomes higher with the increase in the degree of amino acid sequence agreement between the amino acid sequences. The level of amino acid sequence identity can be determined using FASTA as a sequence analysis tool and employing a default parameter. Alternatively, the level of amino acid sequence identity can also be determined using an algorithm BLAST established by Karlin and Altschul (Karlin S, Altschul S F. “Methods for assessing the statistical significance of molecular sequence features by using general scoringschemes” Proc Natl Acad Sci USA. 87:2264-2268 (1990), Karlin S, Altschul S F. “Applications and statistics for multiple high-scoring segments in molecular sequences.” Proc Natl Acad Sci USA. 90:5873-7 (1993)). A program called “BLASTX” which relies on the algorithm BLAST has been developed. Specific techniques for these analysis methods are known, and see a web site of National Center of Biotechnology Information (NCBI) (ncbi.nlm.nih.gov/). The nucleotide sequence “identity” can also be defined accordingly as mentioned above.
The term “conservative substitution” as used herein refers to the matter that an amino acid residue is substituted by an amino acid residue having a similar side chain. For example, the substitution between amino acid residues each having a basic side chain, e.g., lysine, arginine, histidine, is included within the scope of the conservative substitution. In addition, the substitution between amino acid residues each having an acidic side chain, e.g., aspartic acid, glutamic acid, the substitution between amino acid residues each having an uncharged polar side chain, e.g., glycine, asparagine, glutamine, serine, threonine, tyrosine and cysteine, the substitution between amino acid residues each having a non-polar side chain, e.g., alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine and tryptophan, the substitution between amino acid residues each having a β-branched side chain, e.g., threonine, valine and isoleucine, and the substitution between amino acid residues each having an aromatic side chain, e.g., tyrosine, phenylalanine, tryptophan and histidine, are included within the scope of the conservative substitution.
In the description, the expression “RBMS2” means RBMS2 protein.
In the description, each of “a nucleotide”, “an oligonucleotide” and “a polynucleotide” has the same meaning as “a nucleic acid”, and both of DNA and RNA are included. Each of these substances may be in a double-stranded form or a single-stranded form. The term a “nucleotide” (or an “oligonucleotide” or a “polynucleotide”) having a given sequence also includes a “nucleotide” (or an “oligonucleotide” or a “polynucleotide”) having a sequence complementary to the sequence therefor comprehensively, unless otherwise stated. In addition, in the case where the “nucleotide” (or an “oligonucleotide” or a “polynucleotide”) is RNA, the nucleotide symbol “T” shown in a sequence for the nucleotide is to be read “U”.
2. Expression Cassette
The present invention relates to an expression cassette (also sometimes referred to as an “expression cassette of the present invention”, hereinafter) which contains a RBMS2 gene expression regulation region and a gene arranged in such a manner that the expression thereof can be regulated by the region. Hereinbelow, the expression cassette will be described.
In the present application, the term an “expression cassette” refers to a polynucleotide having such a function that a gene contained in the expression cassette can be expressed in a cell (e.g., a eukaryotic cell, preferably an animal cell, more preferably a mammalian cell).
In the present application, the “RBMS2 gene expression regulation region” is not particularly limited, as long as the region is a DNA region capable of regulating the expression of endogenous RBMS2 gene in a cell or a DNA region having the same regulation ability as that of the aforementioned DNA region. An example of the region is a promoter that contains a transcription initiation site for RBMS2 gene, a sequence located upstream (5′ side) from the transcription initiation site, and optionally a sequence located downstream (3′ side) from the transcription initiation site. A specific example of the promoter is a DNA region lying between −10000 to +2000, preferably −5000 to +1000, more preferably −2000 to +500, further preferably −1000 to +200, still further preferably −500 to +100, especially preferably −200 to +50, wherein a nucleotide corresponding to the transcription initiation site for RBMS2 gene is expressed as “+1”, a nucleotide located downstream (3′ side) from the aforementioned nucleotide is expressed by a positive value, and a nucleotide located upstream from the aforementioned nucleotide is expressed by 0 or a negative value. The promoter may have a mutation, as long as the promoter has the same level of expression regulation ability as that of a promoter capable of regulating the expression of endogenous RBMS2 gene in a cell. In this case, the nucleotide sequence for the promoter having a mutation has, for example, a 70% or more, preferably 80% or more, more preferably 90% or more, further preferably 95% or more, still further preferably 97% or more, especially preferably 99% or more identity to a nucleotide sequence for a promoter capable of regulating the expression of endogenous RBMS2 gene in a cell. It is desirable that the position of the mutation is a position other than the position of a known expression regulation element (e.g., a basic transcription factor binding region, any one of various activator binding regions). The consensus sequence for the expression regulation element is already known, and can be searched easily on various data base.
In the present application, “RBMS2 gene” is not particularly limited, and examples of the gene include those from animals including various mammals such as human, monkey, mouse, rat, dog, cat, rabbit, pig, horse, cow, sheep, goat and deer.
RBMS2 genes derived from various animals are known. Specific examples of RBMS2 mRNA and RBMS2 protein which are expression products of the RBMS2 genes include human RBMS2 mRNA such as mRNA consisting of the nucleotide sequence represented by SEQ ID NO: 3 (NCBI Reference Sequence: NM_002898.3); murine RBMS2 mRNA such as mRNA consisting of the nucleotide sequence represented by SEQ ID NO: 4 (NCBI Reference Sequence: NM_019711.2); human RBMS2 protein such as a protein consisting of the amino acid sequence represented by SEQ ID NO: 2 (NCBI Reference Sequence: NP_002889.1); and murine RBMS2 protein such as a protein consisting of the amino acid sequence represented by SEQ ID NO: 5 (NCBI Reference Sequence: NP_062685.2). The RBMS2 protein includes, within the scope thereof, a type in which the N-terminal is deleted. Specific examples of the RBMS2 protein of this type include a mouse-derived protein, which is consisting of the amino acid sequence represented by SEQ ID NO: 6 (NCBI Reference Sequence: NP_001034169.1) (whose mRNA is consisting of the nucleotide sequence represented by SEQ ID NO: 7 (NCBI Reference Sequence: NM_001039080.1)).
RBMS2 protein, which is an expression product of RBMS2 gene, may have an amino acid mutation such as substitution, deletion, addition and insertion, as long as the RBMS2 protein can have an activity to promote the expression of mRNA having a 3′UTR derived from inflammation promoting factor mRNA (e.g., IL-6 mRNA, COX-2 mRNA, IL-8 mRNA, IL-1β mRNA, TNF-α mRNA, MMP1 mRNA, IL-24 mRNA, c-Myc mRNA) or a protein translated from the mRNA (wherein the activity is also referred to as an “inflammation promoting factor expression promoting activity”, hereinafter). From the viewpoint that the inflammation promoting factor expression promoting activity is less likely to be deteriorated, the type of the mutation is preferably substitution, more preferably conservative substitution.
RBMS2 mRNA, which is a transcription product of RBMS2 gene, may have a nucleotide mutation, such as substitution, deletion, addition and insertion, as long as a protein translated from the mRNA can have an inflammation promoting factor expression promoting activity. The type of the mutation is preferably a mutation by which an amino acid substitution does not occur in a protein translated from the mRNA or a mutation by which a conservative substitution of an amino acid residue can occur.
The presence or absence of an inflammation promoting factor expression promoting activity can be determined by or in accordance with a known method. For example, this presence or absence can be determined by or in accordance with the methods described in the section “Examples”. A specific example is as follows: in Example 1B, when an expression vector for a test protein is used as the expression vector, it is determined that the test protein has an inflammation promoting factor expression promoting activity when the luciferase activity is higher than that achieved when an empty vector is used as the expression vector.
A preferred specific example of RBMS2 protein which is an expression product of RBMS2 gene is at least one protein selected from the group consisting of a protein mentioned in (a) and a protein mentioned in (b):
(a) a protein which is consisting of an amino acid sequence represented by SEQ ID NO: 2, 5 or 6; and
(b) a protein which has 85% or more identity to an amino acid sequence represented by SEQ ID NO: 2, 5 or 6 and has an inflammation promoting factor expression promoting activity.
In (b), the degree of identity is more preferably 90% or more, further preferably 95% or more, still further preferably 98% or more.
An example of the protein mentioned in (b) is:
(b′) a protein which is consisting of an amino acid sequence having the substitution, deletion, addition or insertion of one or several amino acid residues in an amino acid sequence represented by SEQ ID NO: 2, 5 or 6 and has an inflammation promoting factor expression promoting activity.
In (b′), the wording “several amino acid residues” refers to, for example, 2 to 30 amino acid residues, preferably 2 to 10 amino acid residues, more preferably 2 to 5 amino acid residues, still further preferably 2 or 3 amino acid residues.
A preferred specific example of RBMS2 mRNA which is a transcription product of RBMS2 gene is at least one component selected from the group consisting of mRNA mentioned in (c) and mRNA mentioned in (d):
(c) mRNA consisting of a nucleotide sequence represented by SEQ ID NO: 3, 4 or 7; and
(d) mRNA which has 85% or more identity to a nucleotide sequence represented by SEQ ID NO: 3, 4 or 7 and encodes a protein having an inflammation promoting factor expression promoting activity.
In (d), the degree of identity is more preferably 90% or more, further preferably 95% or more, still further preferably 98% or more.
An example of the protein mentioned in (d) is:
(d′) a protein which is consisting of a nucleotide sequence having the substitution, deletion, addition or insertion of one or several nucleotides in a nucleotide sequence represented by SEQ ID NO: 3, 4 or 7 and has an inflammation promoting factor expression promoting activity.
In (d′), the wording “several nucleotides” refers to, for example, 2 to 500 nucleotides, preferably 2 to 100 nucleotides, more preferably 2 to 50 nucleotides, still further preferably 2 to 10 nucleotides.
In the present application, the term “gene” which is arranged so that the expression of the gene can be regulated by a RBMS2 gene expression regulation region is not particularly limited, as long as an expression product of the gene can be detected. In this regard, the term “gene” has a concept that a sequence encoding a protein that is an expression product of the gene is included, other sequence in the gene (e.g., an intron sequence) may be included, but a promoter is not contained. Examples of the gene include a reporter gene, a drug-resistant gene, an enzyme gene, a structural gene, a transport gene, a storage gene, a contractile gene, a defense gene, a regulatory gene, and modified genes thereof. Examples of the modified gene include a gene produced by mutating a nucleotide so that an amino acid mutation, e.g., substitution, deletion, addition and insertion, can occur in a part of a protein that is an expression product of the above-mentioned gene; and a gene which can express a protein that is a fusion of expression products of some of the above-mentioned genes. Among these genes, a reporter gene, a drug-resistant gene or the like is preferred, and a reporter gene is more preferred.
In the present application, the “reporter gene” is not particularly limited, as long as the gene is, for example, a gene encoding a light-emitting (color-developing) protein capable of reacting with a specific substrate to emit light (develop a color) or a fluorescent protein capable of emitting fluorescence by the action of excited light. Examples of the light-emitting (color-developing) protein include luciferase, β-galactosidase, chloramphenicol acetyltransferase and β-glucuronidase. Examples of the fluorescent protein include GFP, Azami-Green, ZsGreen, GFP2, HyPer, Sirius, BFP, CFP, Turquoise, Cyan, TFP1, YFP, Venus, ZsYellow, Banana, KusabiraOrange, RFP, DsRed, AsRed, Strawberry, Jred, KillerRed, Cherry, HcRed and mPlum.
In the present application, the “drug-resistant gene” is not particularly limited, as long as the gene is a gene capable of imparting resistance to a drug, e.g., an antibacterial drug, to a cell in which the gene is expressed. Specific examples of the drug-resistant gene include a chloramphenicol-resistant gene, a tetracycline-resistant gene, a neomycin-resistant gene, an erythromycin-resistant gene, a spectinomycin-resistant gene, a kanamycin-resistant gene, a hygromycin-resistant gene and a puromycin-resistant gene.
With respect to the above-mentioned “gene”, the wording “(being) arranged so that the expression of the gene can be regulated” means that the gene is arranged so that a protein encoded by the gene can be expressed. A specific example of the arrangement is an aspect in which the gene expression regulating region and the gene are arranged in this order as observed from the 5′-side.
If necessary, the expression cassette of the present invention may contain other element (e.g., a multi-cloning site (MCS)). For example, in the case where a RBMS2 gene expression regulation region and the above-mentioned “gene” are arranged in this order as observed from the 5′-side, an aspect can be mentioned in which a MCS is arranged on the 5′-side of the RBMS2 gene expression regulation region (preferably adjacent to the region), or between the RBMS2 gene expression regulation region and the above-mentioned “gene” (preferably adjacent to one or both of the region and the gene), or on the 3′-side of the above-mentioned “gene” (preferably adjacent to the gene). The MCS is not particularly limited, as long as multiple (e.g., 2 to 50, preferably 2 to 20, more preferably 2 to 10) restriction enzyme sites are contained.
The expression cassette of the present invention may constitute a vector by itself or in conjunction with other sequence. The vector (also referred to as a “vector of the present invention”, hereinafter) is also included within the scope of the present invention. The “other sequence” is not particularly limited, and any one of various known sequences that can be contained in an expression vector can be used. Examples of the sequence include a replication origin and a drug-resistant gene. With respect to the type of the drug-resistant gene, the above-mentioned types can be mentioned. The type of the vector is not particularly limited, and examples of the vector include a plasmid vector such as an animal cell expressing plasmid; and a virus vector such as a retrovirus, a lentivirus, an adenovirus, an adeno-associated virus, a herpesvirus and a Sendai virus.
The vector according to the present invention may be contained in a cell. The cell (also referred to as “a cell of the present invention”, hereinafter) is also included within the scope of the present invention. In the cell of the present invention, the vector of the present invention may be present outside of the genome or may be present in such a form that the vector is integrated in the genome. The organism species from which the cell is derived is not particularly limited, and examples of the species include various mammals such as human, monkey, mouse, rat, dog, cat, rabbit, pig, horse, cow, sheep, goat and deer. The type of the cell is not particularly limited, and cells derived from various tissues or having various properties can be mentioned, such as a blood cell, a hematopoietic stem cell/progenitor cell, a gamete (a sperm, an ovum), a fibroblast, an epithelial cell, a vascular endothelial cell, a nerve cell, a liver cell, a keratin generating cell, a muscle cell, an epidermal cell, an endocrine cell, an ES cell, an iPS cell, a tissue stem cell and a cancer cell.
At least one component selected from the group consisting of the expression cassette of the present invention, the vector of the present invention and the cell of the present invention can be used preferably in the below-mentioned screening method of the present invention. From this viewpoint, the present invention also relates to a reagent for use in the screening for a substance capable of inhibiting the expression or function of RBMS2 (preferably an active ingredient of an inhibitor of the expression of an inflammation promoting factor) (wherein the reagent is also referred to as a “reagent of the present invention”, hereinafter), which contains at least one component selected from the group consisting of the expression cassette of the present invention, the vector of the present invention and the cell of the present invention.
The reagent of the present invention is not particularly limited, as long as at least one component selected from the group consisting of the expression cassette of the present invention, the vector of the present invention and the cell of the present invention is contained. In addition, the reagent may also contain, for example, a substance necessary for the detection of an expression product from the expression cassette of the present invention. Specific examples of the substance include a reagent for hybridization, a label for a probe, a labeled body detection agent, a buffer solution and a device. The reagent of the present invention may be in the form of a screening kit including these components.
3. A Screening Method
The present invention relates to a method for screening for a substance capable of inhibiting the expression or function of RBMS2 by employing at least one item selected from the group consisting of items (i) to (iii) as an index in the presence of a test substance:
(i) the expression amount/level of a gene of which the expression can be regulated by a RBMS2 gene expression regulation region;
(ii) the binding amount/level of RBMS2 to RNA containing an AU-rich element; and
(iii) the amount/level of mRNA containing an AU-rich element in a 3′-UTR thereof or the amount/level of a protein derived from the mRNA in a RBMS2-overexpressing cell. Hereinbelow, the expression cassette will be described (wherein the reagent is also referred to as a “screening method of the present invention”, hereinafter).
As the “test substance (i.e., substance to be tested)” to be used in the present application, any one of wide varieties of compounds can be used, regardless of the fact that the compound is a naturally occurring compound or an artificially produced compound. Alternatively, a purified compound, a composition prepared by mixing many types of compounds together, or an extract of an animal or plant origin may also be used. The compound includes a low-molecular-weight compound as well as a high-molecular-weight compound such as a protein, a nucleic acid and a polysaccharide.
More specific examples of the screening method, when the value of the index in the presence of a test substance is smaller than the value of the index in the absence of the test substance, the test substance can be selected as a substance capable of inhibiting the expression or function of RBMS2.
The screened “substance capable of inhibiting the expression or function of RBMS2” can be selected as an active ingredient for an inhibitor of the expression of an inflammation promoting factor or a candidate substance for the active ingredient.
Herein below, specific screening methods for the aspects which utilize the indices (i) to (iii), respectively, will be described.
3-1. Screening Method Using Index (i)
A screening method using index (i) includes steps (a1) to (c1):
(a1) bringing an expression system which contains an expression cassette containing a RBMS2 gene expression regulation region and a gene arranged in such a manner that the expression thereof can be regulated by the region into contact with a test substance;
(b1) measuring, as an expression amount/level of interest, the amount/level of the gene expressed in the expression system that has been contacted with the test substance and then comparing the expression amount/level of interest with a control expression amount/level that is the expression amount/level of the gene in an expression system that has not been contacted with the test substance; and
(c1) selecting the test substance as a substance capable of inhibiting the expression of RBMS2 when the expression amount/level of interest is smaller than the control expression amount/level.
In step (a1), the “expression cassette containing a RBMS2 gene expression regulation region and a gene arranged in such a manner that the expression thereof can be regulated by the region” is as mentioned in the section “2. Expression cassette”. However, the expression cassette in step (al) is different from the expression cassette in the section “2. Expression cassette” in that the expression cassette in step (al) includes an expression cassette containing an endogenous RBMS2 gene expression regulation region in the genome of a cell and RBMS2 gene located downstream from the region.
In step (a1), the “expression system” is not particularly limited, as long as a component necessary for the expression of a gene from the expression cassette is contained. Examples of the expression system include a cell-free protein expression system and a cell. The cell-free protein expression system is generally consisting of a solution (e.g., a liquid extract from cells) containing a factor necessary for transcription and translation (e.g., an RNA polymerase, a ribosome, any one of various ribonucleotides), and a commercially available product may be used. The cell is not particularly limited, as long as a gene can be expressed from the expression cassette in the cell. Examples of the cell include a cell derived from any one of various tissues or a cell having any one of various properties, such as a blood cell, a hematopoietic stem cell/progenitor cell, a gamete (a sperm, an ovum), a fibroblast, an epithelial cell, a vascular endothelial cell, a nerve cell, a liver cell, a keratin generating cell, a muscle cell, an epidermal cell, an endocrine cell, an ES cell, an iPS cell, a tissue stem cell and a cancer cell. From the viewpoint that the screening can be performed more easily, the expression system is preferably a cell.
In step (a1), in the case where the expression system containing the expression cassette is a cell-free protein expression system, it is preferred that the expression cassette is contained in the solution in the system. In the case where the expression system is a cell, there are an aspect where the expression cassette is integrated into the genome of the cell, an aspect where the expression cassette is present outside of the genome of the cell (e.g., in the form of a plasmid), and the like.
In step (a1), the aspect of bringing the test substance into contact is not particularly limited. In the case where the expression system is a cell-free protein expression system, it is preferred to add the test substance to the solution in the system, for example. In the case where the expression system is a cell, it is preferred to add the test substance to a cell culture medium, for example.
In step (a1), the contacting time of the test substance is not particularly limited, and can be set appropriately depending on the type of the test substance, the type of the expression system and others. The time is, for example, 5 minutes to 72 hours.
In step (b1), the measurement of the expression amount/level of interest and the control expression amount/level can be carried out in accordance with or based on a known method. It is preferred to carry out the measurement using the diagnostic agent of the present invention mentioned above. In the case where the substance to be measured is a nucleic acid (RBMS2 mRNA or a nucleic acid derived therefrom (e.g., cDNA)), the measurement can be carried out by a northern blotting method, a RT-PCR method, a DNA chip analysis method, an in situ hybridization analysis method or the like using the nucleic acid as a probe or a primer, for example. In the case where the substance to be measured is a protein, the measurement can be carried out by a western blotting method, an ELISA method or the like using a specific antibody. In the case where the substance to be measured is a reporter protein, the measurement can be carried out by a method capable of detecting a reporter signal (e.g., a fluorescence, a developed color, emitted light) coming from the reporter protein (e.g., the microscopic observation of fluorescence, a luciferase assay). In the case where the substance to be measured is a drug-resistant protein, the measurement can be carried out indirectly by counting the number of cells surviving in the presence of the drug.
In the case where a northern blotting method is employed, concretely, a method can be exemplified, in which a probe is labeled with a radioactive isotope (e.g., 32P, 33P: RI), a fluorescent substance or the like, then the labeled probe is hybridized with mRNA derived from the expression system and transferred onto a nylon membrane or the like in the conventional manner, and then a double strand formed by the diagnostic agent and mRNA derived from the sample from the subject is subjected to the detection and measurement of a signal coming from a labeled probe (a labeling substance such as an RI or a fluorescent substance) using a radioactive ray detector BAS-1800II (manufactured by Fujifilm Corporation), a fluorescence detector or the like. Alternatively, a method may also be employed, in which the diagnostic agent is labeled using AlkPhos Direct Labelling and Detection System (manufactured by Amersham Pharmacia Biotech) in accordance with the protocol, then the labeled diagnostic agent is hybridized with mRNA derived from the expression system, and then a signal coming from a labeled product of the diagnostic agent is detected and measured using a multibioimager STORM860 (manufactured by Amersham Pharmacia Biotech).
In the case where a RT-PCR method is employed, concretely, a method can be exemplified, in which cDNA is prepared from RNA derived from the expression system in the conventional manner, then a pair of primers prepared from the diagnostic agent of the present invention (i.e., a positive strand capable of binding to the cDNA (− strand), a negative strand capable of binding to + strand) are hybridized with the cDNA to perform a PCR method so that a target region can be amplified using the cDNA as a template, and then amplified double-stranded DNA thus produced is detected. For the detection of the amplified double-stranded DNA, a method in which the above-mentioned PCR is carried out using a primer that is labeled with an RI or a fluorescent substance in advance to detect labeled double-stranded DNA produced; a method in which double-stranded DNA thus produced is transferred onto a nylon membrane or the like in the conventional manner, then the labeled probe is used as a probe and is hybridized with the double-stranded DNA, and then a hybridized product is detected; and other method can be employed. In this regard, a labeled double-stranded DNA product thus produced can be measured using an arrangement 2100 bioanalyzer (manufactured by Yokogawa Analytical Systems, Inc.) or the like. Alternatively, it is also possible to prepare a RT-PCR reaction solution using SYBR Green RT-PCR Reagents (manufactured by Applied Biosystems) in accordance with the protocol, then react the reaction solution using ABI PRISM 7700 Sequence Detection System (manufactured by Applied Biosystems), and then detect a reaction product.
In the case where DNA chip analysis is utilized, a method can be mentioned, in which a DNA chip to which a (single-stranded or double-stranded) DNA probe is attached is provided, then the DNA chip is hybridized with cRNA prepared from RNA derived from the expression system in the conventional manner to produce a double-stranded product formed from the DNA and the cRNA, then the double-stranded product is bonded to a labeling probe prepared from the diagnostic agent of the present invention, and then the bonded product is detected.
As the western blotting method, a method can be exemplified, in which a primary antibody is used, then a labeled antibody (an antibody capable of binding to the primary antibody) that is labeled with a radioactive isotope such as 125I, a fluorescent substance, an enzyme such as horseradish peroxidase (HRP) or the like is used as a secondary antibody, and a signal coming from the labeling substance, e.g., the radioactive isotope, the fluorescent substance or the like, in the labeled compound is detected using a radioactive ray measurement device BAS-1800II (manufactured by Fujifilm Corporation), a fluorescence detector or the like. Alternatively, it is also possible to use a primary antibody, then the signal is detected using ECL Plus Western Blotting Detection System (manufactured by Amersham Pharmacia Biotech) in accordance with the protocol and is then measured using multibioimager STORM860 (manufactured by Amersham Pharmacia Biotech).
In step (c1), for example, in the case where the expression amount/level of interest is smaller than the control expression amount/level, the test substance can be selected as a substance capable of inhibiting the expression of RBMS2 when the expression amount/level of interest is smaller by ½, ⅕, 1/10, 1/20, 1/50 1/100 than the control expression amount/level.
3-2. Screening Method Using Index (ii)
A screening method using index (ii) includes steps (a2) to (c2):
(a2) bringing RNA containing an AU-rich element into contact with RBMS2 in the presence of a test substance;
(b2) measuring the binding amount/level between the RNA and the RBMS2 which are contacted with each other in the presence of a test substance as a binding amount/level of interest, and then comparing the binding amount/level of interest with a control binding amount/level that is the binding amount/level between the RNA and the RBMS2 which are contacted with each other in the absence of the test substance; and
(c2) selecting the test substance as a substance capable of inhibiting the function of RBMS2 when the binding amount/level of interest is smaller than the control binding amount/level.
In step (a2), the “AU-rich element” refers to an element in which a nucleotide sequence represented by general formula: (U)nW1(U)mW2(U)o [wherein U represents an uracil; W1 and W2 may be the same as or different from each other and independently represent an adenine or uracil (provided that a case where each of W1 and W2 represents an uracil is excluded); n represents an integer of 0 to 3; o represents an integer of 0 to 3; and m represents an integer of 3 to 5 (preferably 3)] typified by a sequence AUUUA is a consensus sequence. The AU-rich element is preferably an AU-rich element derived from mRNA of an inflammation promoting factor (e.g., at least one type of mRNA selected from the group consisting of IL-6 mRNA, COX-2 mRNA, IL-8 mRNA, IL-1β mRNA, TNF-α mRNA, MMP1 mRNA, IL-24 mRNA and c-Myc mRNA). In other words, the term “an AU-rich element derived from . . . ” refers to an AU-rich element contained in each of these mRNA.
In step (a2), the RNA containing an AU-rich element is not particularly limited, as long as the RNA contains the AU-rich element. The number of the AU-rich elements in the RNA is, for example, 1 to 20, preferably 2 to 15, more preferably 3 to 12, further preferably 4 to 10, still further preferably 6 to 9. When the number of the AU-rich elements in the RNA is multiple, it is desirable that the AU-rich elements are present in a relatively narrow region (e.g., 20 to 400 bp, preferably 40 to 200 bp, more preferably 60 to 150 bp, further preferably 80 to 120 bp). It is preferred that the region is U-rich. The degree of U-richness is as follows: the rate of the number of U residues relative to the total number of nucleotides in the region is, for example, 20% or more, preferably 30% or more, more preferably 50% or more. The upper limit of the ratio is not particularly limited, and examples of the upper limit include 90%, 80%, 70% and the like.
In step (a2), the RBMS2 is the same as that in the RBMS2 protein mentioned in the section “2. Expression cassette”.
In step (a2), the aspect of bringing the test substance into contact is not particularly limited, as long as the three components, i.e., the RNA containing an AU-rich element, RBMS2 and the test substance, can be contacted with one another. For example, an aspect where the three components are mixed together in a proper solvent, an aspect where the three components are allowed to co-exist in a cell, and the like can be mentioned.
In step (a2), the contacting time of the test substance is not particularly limited, and can be set appropriately depending on the type of the test substance, whether the contact is achieved in a test tube or in a cell, or the like. The time is, for example, 5 minutes to 72 hours.
In step (b2), the measurement of the binding amount/level of interest and the control binding amount/level can be carried out by or in accordance with a known method. For example, the measurement can be carried out by an immunoprecipitation method, a gel shift method or the like.
The immunoprecipitation method can be carried out typically in the following manner. A cell lysate each containing RNA containing an AU-rich element and RBMS2 (and being in contact with the test substance or being not in contact with the test substance) is prepared, then the lysate is immunoprecipitated with an antibody directed against RBMS2 or an antibody directed against a tag in the case where the tag is attached to the RBMS2, and then the amount/level of “RNA containing an AU-rich element” contained in a precipitate is measured by a PCR. It is demonstrated that the binding amount/level of interest or the control binding amount/level becomes larger with the increase in the measured amount/level.
A gel shift method can be carried out typically in the following manner. A solution containing the RNA containing an AU-rich element and RBMS2 (and further containing the test substance or not containing the test substance) is electrophoresed using a proper gel (e.g., an acrylamide gel), and then a signal of a band that indicates a complex of the RNA containing an AU-rich element and RBMS2 which are bonded together is measured. It is demonstrated that the binding amount/level of interest or the control binding amount/level becomes larger with the increase in the measured amount/level.
In step (c2), for example, in the case where the binding amount/level of interest is smaller than the control binding amount/level, the test substance can be selected as a substance capable of inhibiting the expression of RBMS2 when the binding amount/level of interest is smaller by ½, ⅕, 1/10, 1/20, 1/50 1/100 than the control binding amount/level.
3-3. Screening Method Using Index (iii)
A screening method using index (iii) includes steps (a3) to (c3):
(a3) bringing a cell which contains mRNA containing an AU-rich element in a 3′-UTR thereof and in which RBMS2 is overexpressed into contact with a test substance;
(b3) measuring the amount/level of the mRNA or a protein derived from the mRNA in the cell that has been contacted with the test substance as an amount/level of interest, and then comparing the amount/level of interest with a control amount/level that is the amount/level of the mRNA or a protein derived from the mRNA in a cell that is not contacted with the test substance; and
(c3) selecting the test substance as a substance capable of inhibiting the function of RBMS2 when the amount/level of interest is smaller than the control amount/level.
In step (a3), the AU-rich element is the same as that mentioned in the section “3-2. Screening method using index (ii)”.
In step (a3), the mRNA containing an AU-rich element in a 3′-UTR thereof is not particularly limited, as long as the mRNA contains an AU-rich element in a 3′-UTR thereof. The number of AU-rich elements in the 3′-UTR of the mRNA is, for example, 1 to 20, preferably 2 to 15, more preferably 3 to 12, further preferably 4 to 10, and still further preferably 6 to 9. In the case where the number if AU-rich elements in the mRNA is multiple, it is desirable that the AU-rich elements are present in a relatively narrow region (e.g., 20 to 400, preferably 40 to 200, more preferably 60 to 150, further preferably 80 to 120).
In step (a3), the mRNA containing an AU-rich element in the 3′-UTR thereof is preferably mRNA for an inflammation promoting factor, more preferably IL-6 mRNA, COX-2 mRNA, IL-8 mRNA, IL-1β mRNA, TNF-α mRNA, MMP1 mRNA, IL-24 mRNA, c-Myc mRNA or the like, or a variant of any one of these mRNA molecules. As the variant, mRNA in which one or several (e.g., 2 to 50, preferably 2 to 20, more preferably 2 to 10, further preferably 2 to 5, still further preferably 2 or 3) nucleotides are substituted, deleted, added or inserted preferably in a sequence other than the AU-rich element or a part of the AU-rich element can be mentioned.
In step (a3), the RBMS2 is the same as the RBMS2 protein in the section “2. Expression cassette”.
In step (a3), the cell is the same as the cell in the section “3-1. Screening method using index (i)”.
In step (a3), the aspect of bringing the test substance into contact is not particularly limited. For example, an aspect where the test substance is added to the cell culture medium can be mentioned.
In step (a3), the contacting time of the test substance is not particularly limited, and can be set appropriately depending on the type of the test substance and the like. The time is, for example, 5 minutes to 72 hours.
In step (b3), the measurement of the amount/level of interest and the control amount/level is carried out in the same manner as in the measurement of the expression amount/level of interest and the control expression amount/level in the section “3-1. Screening method using index (i)”.
In step (c3), in the case where the amount/level of interest is smaller than the control amount/level, the test substance can be selected as a substance capable of inhibiting the expression of RBMS2 when the amount/level of interest is smaller by ½, ⅕, 1/10, 1/20, 1/50 or 1/100 than the control amount/level.
4. Inhibitor of Expression of Inflammation Promoting Factor
The present invention relates to an inhibitor of the expression of an inflammation promoting factor (wherein the inhibitor is also referred to as “the agent of the present invention” in the description) which contains at least one component selected from the group consisting of a RBMS2 expression inhibitor and a RBMS2 function inhibitor. Hereinbelow, the inhibitor will be described.
The RBMS2 of which the expression and function are to be inhibited is the same as the RBMS2 protein in the section “2. Expression cassette” above.
The RBMS2 expression inhibitor is not particularly limited, as long as the inhibitor can reduce the expression amount/level of RBMS2 protein. Specific examples of the inhibitor include RBMS2-specific small interfering RNA (siRNA), RBMS2-specific microRNA (miRNA), a RBMS2-specific antisense nucleic acid, and expression vectors therefore. In addition, it is mentioned in the section “Examples” that IL-10 protein can act as a RBMS2 expression inhibitor.
The RBMS2-specific siRNA is not particularly limited, as long as the siRNA is a double-stranded RNA molecule capable of specifically inhibiting the expression of a gene encoding RBMS2. In one embodiment, the siRNA preferably has a length of 18 nucleotides or more, 19 nucleotides or more, 20 nucleotides or more, or 21 nucleotides or more. The siRNA preferably has a length of, for example, 25 nucleotides or less, 24 nucleotides or less, 23 nucleotides or less, or 22 nucleotides or less. It is conceived that the value of the upper limit and the value of the lower limit of the length of the siRNA which are mentioned herein can be combined arbitrarily. For example, the following combinations of the length can be conceived: a length in which the lower limit is 18 nucleotides and the upper limit is 25 nucleotides, 24 nucleotides, 23 nucleotides, or 22 nucleotides; a length in which the lower limit is 19 nucleotides and the upper limit is 25 nucleotides, 24 nucleotides, 23 nucleotides, or 22 nucleotides; a length in which the lower limit is 20 nucleotides and the upper limit is 25 nucleotides, 24 nucleotides, 23 nucleotides, or 22 nucleotides; and a length in which the lower limit is 21 nucleotides and the upper limit is 25 nucleotides, 24 nucleotides, 23 nucleotides, or 22 nucleotides.
The siRNA may be shRNA (small hairpin RNA). The shRNA can be designed so that a part thereof forms a stem loop structure. For example, when a sequence lying in a specific region is named “sequence a” and a complementary strand to the sequence a is named “sequence b”, the shRNA can be designed in such a manner that the sequence a, a spacer and the sequence b are arranged in this order on a single RNA strand and the whole length becomes 45 to 60 nucleotides. The sequence a is a sequence for a partial region of the nucleotide sequence encoding the target RBMS2, and the target region is not limited particularly, and an arbitrary region can be employed as a candidate. The length of the sequence a is 19 to 25 nucleotides, preferably 19 to 21 nucleotides.
The RBMS2-specific siRNA may have additional nucleotides at the 5′- or 3′-terminal thereof. The length of the additional nucleotides is generally about 2 to 4 nucleotides. The additional nucleotides may be in the form of DNA or RNA. When additional nucleotides are in the form of DNA, the stability of the nucleic acid may be improved. Examples of the sequence for the additional nucleotides include, but are not limited to, ug-3′, uu-3′, tg-3′, tt-3′, ggg-3′, guuu-3′, gttt-3′, ttttt-3′ and uuuuu-3′.
The siRNA may have an overhang at the 3′-terminal thereof, and a specific example of the overhang is dTdT (wherein dT represents a deoxythymidine). Alternatively, the siRNA may have a blunt end without the addition of a terminal. In the siRNA, the number of nucleotides in a sense strand may be different from that in an antisense strand. For example, the siRNA may be “asymmetrical interfering RNA (aiRNA)” in which the antisense strand has an overhang at each of the 3′-terminal and the 5′-terminal. Typical aiRNA is one in which the antisense strand is consisting of 21 nucleotides, the sense strand is consisting of 15 nucleotides, and an overhang structure consisting of 3 nucleotides is formed at each terminal of the antisense strand.
The position of the target sequence in the RBMS2-specific siRNA is not particularly limited. In one embodiment, it is desirable to select the target sequence from a 5′-UTR and a sequence lying between the initiation codon and about 50th nucleotide from the initiation codon and not to select the target sequence from a 3′-UTR. It is preferred that candidates for the selected target sequence are determined with respect to the matter that there is no homology in a sequence consisting of contiguous 16 to 17 nucleotides in mRNA other than the target sequence using a homology search software such as BLAST (ncbi.nlm.nih.gov/BLAST/), and the specificity of the selected target sequence is confirmed. With respect to a target sequence of which the specificity has been confirmed, double-stranded RNA which is consisting of a sense strand having a 3′-terminal TT or UU overhang in a sequence lying between 19st nucleotide and 21st nucleotide following AA (or NA) and an antisense strand which is consisting of a sequence complementary to the sequence lying between 19st nucleotide and 21st nucleotide and a 3′-terminal TT or UU overhang may be designed as the siRNA. shRNA, which is a precursor of the siRNA, can be designed by appropriately selecting an arbitrary linker sequence (e.g., about 5 to 25 nucleotides) that can form a loop structure and then connecting the sense strand to the antisense strand with the linker sequence interposed therebetween.
The sequence for the siRNA and/or the shRNA can be searched using various search software which is provided for free on web sites. Examples of the sites are as follows. siRNA Target Finder (ambion.com/jp/techlib/misc/siRNA_finder.html) provided by Ambion, pSilencer (registered trademark) Insert design tool for Expression Vectors (ambion.com/jp/techlib/mise/psilencer_converter.html) GeneSeer (codex.cshl.edu/scripts/newsearchhairpin.cgi) provided by RNAi Codex.
The siRNA can be prepared by separately synthesizing an sense strand and an antisense strand in the target sequenced on mRNA using a DNA/RNA automatic synthesizer, then denaturing these strands in a proper annealing buffer solution at about 90 to 95° C. for about 1 minute and then annealing the resultant product at about 30 to about 70° C. for about 1 to about 8 hours. Alternatively, the siRNA may also be prepared by synthesizing shRNA that is a precursor of the siRNA and then cutting the shRNA with a RNA cutting protein dicer.
The RBMS2-specific miRNA may be any one, as long as the miRNA can inhibit the translation of a gene encoding RBMS2. For example, the miRNA may inhibit the translation of target mRNA by forming a pair with a 3′-untranslated region (UTR) in the target rather than by cutting the target mRNA like siRNA. The miRNA may be any one of pri-miRNA (primary miRNA), pre-miRNA (precursor miRNA) and mature miRNA. The length of the miRNA is not particularly limited, and the length of the pri-miRNA is generally several hundreds to several thousands of nucleotides, the length of the pre-miRNA is generally 50 to 80 nucleotides, and the length of the mature miRNA is generally 18 to 30 nucleotides. In one embodiment, the RBMS2-specific miRNA is preferably pre-miRNA or mature miRNA, more preferably mature miRNA. The RBMS2-specific miRNA may be synthesized by a known procedure, or may be purchased from a synthetic RNA supplier company.
The RBMS2-specific antisense nucleic acid contains a nucleotide sequence complementary or substantially complementary to the nucleotide sequence for mRNA of a gene encoding RBMS2 or a part of the nucleotide sequence, and has a function to form a specific and stable double strand with the mRNA and bind to the mRNA so as to inhibit the synthesis of RBMS2 protein. The antisense nucleic acid may be any one selected from DNA, RNA and DNA/RNA chimera. In the case where the antisense nucleic acid is DNA, an RNA:DNA hybrid formed from a target RNA and the antisense DNA can be recognized by endogenous ribonuclease H (RNase H) to cause the selective degradation of the target RNA. Therefore, in the case of antisense DNA that directs the degradation with RNase H, the target sequence may be contained in mRNA as well as a sequence for an intron region in an RBMS2 initial translation product. The intron sequence can be determined by comparing the genome sequence with cDNA nucleotide sequence in RBMS2 gene using a homology search program such as BLAST and FASTA.
The length of the target region in the RBMS2-specific antisense nucleic acid is not particularly limited, as long as the antisense nucleic acid can hybridize with the target region so as to inhibit the translation into RBMS2 protein. The RBMS2-specific antisense nucleic acid may be the full length or a partial sequence of mRNA encoding RBMS2. From the viewpoint of easiness of the synthesis and the problems of antigenicity and intracellular migration and the like, an oligonucleotide having a length of about 10 to about 40 nucleotides, particularly about 15 to about 30 nucleotides, is preferred, but the oligonucleotide is not limited thereto. More concretely, a preferred target region for the antisense nucleic acid can be selected from a 5′-terminal hairpin loop, a 5′-terminal untranslated region, a translation initiation codon, a protein coding region, an ORF translation stop codon, a 3′-terminal untranslated region, a 3′-terminal palindrome region and a 3′-terminal hairpin loop of RBMS2 gene, but is not limited thereto.
The RBMS2-specific antisense nucleic acid may also be one which can hybridize with mRNA for RBMS2 gene or an initial transcription product of the mRNA to inhibit the translation into a protein and can also bind to these genes, each of which is double-stranded DNA, to form a triplex so as to inhibit the transcription into RNA (i.e., an antigene).
Each of nucleotide molecules that constitute the RBMS2-specific siRNA, the RBMS2-specific miRNA and the RBMS2-specific antisense nucleic acid may contain various chemical modification for the purpose of improving (chemical and/or enzymatical) stability or specific activity (affinity for RNA). For example, in order to prevent the degradation caused by a hydrolysis enzyme such as a nuclease, a phosphate residue (phosphate) in each of the nucleotides constituting the antisense nucleic acid may be substituted by, for example, a chemically modified phosphate residue such as phosphorothioate (PS), methylphosphonate and phosphorodithioate. Alternatively, the hydroxyl group at 2′-position in a ribose in each nucleotide may be substituted by —OR (R=CH3(2′-O-Me), CH2CH2OCH3(2′-O-MOE), CH2CH2NHC(NH)NH2, CH2CONHCH3, or CH2CH2CN, etc.). In addition, the base moiety (pyrimidine, purine) may be chemically modified. For example, the introduction of a methyl group or a cationic functional group to the 5′-position in a pyrimidine base, the substitution of a carbonyl group at 2′-position by a thiocarbonyl group, or the like may be applied. In addition, a part of each of the nucleotide molecules that constitute siRNA and miRNA may be substituted by naturally occurring DNA.
The RBMS2-specific siRNA, the RBMS2-specific miRNA, the RBMS2-specific antisense nucleic acid and the like can be prepared by determining mRNA or a target sequence for an initial transcription product on the basis of the cDNA sequence or the genomic DNA sequence for RBMS2 gene and then synthesizing a sequence complementary to the sequence using a commercially available DNA/RNA automatic synthesizer. The antisense nucleic acid containing the above-mentioned modifications can also be chemically synthesized by a known technique.
The expression vector for the RBMS2-specific siRNA, the RBMS2-specific miRNA or the RBMS2-specific antisense nucleic acid is not particularly limited, as long as the RBMS2-specific siRNA, the RBMS2-specific miRNA or the RBMS2-specific antisense nucleic acid is integrated in an expressible state. Typically, the expression vector contains a promoter sequence, a polynucleotide containing a sequence encoding the RBMS2-specific siRNA, the RBMS2-specific miRNA or the RBMS2-specific antisense nucleic acid (optionally also containing a transcription stop signal sequence) and optionally other sequence. The promoter is not particularly limited, and examples of the promoter include an RNA polymerase II (polII)-type promoter, such as a CMV promoter, an EF1 promoter, an SV40 promoter, a MSCV promoter, a hTERT promoter, a β-actin promoter and a CAG promoter; and a RNA polymerase III (polIII)-type promoter, such as a mouse or human U6-snRNA promoter, a human H1-RNase P RNA promoter and a human valine-tRNA promoter. Among these promoters, a polIII-type promoter is preferred from the viewpoint of the correct transcription ability of short RNA. The “other sequence” is not particularly limited, and any one of various known sequences which can be contained in expression vectors can be employed. Examples of the sequence include a replication origin and a drug-resistant gene. As the types of the drug-resistant gene and the vector, those mentioned above can be exemplified.
Another example of the RBMS2 expression inhibitor is a RBMS2-specific ribozyme. The term “ribozyme” refers to RNA having an enzymatic activity to cleave a nucleic acid in the narrow sense. In the present application, however, DNA can also be included, as long as the DNA has a sequence-specific nucleic acid cleavage activity. The ribozyme having the broadest utility as a ribozyme nucleic acid is self-splicing RNA that is found in infectious RNA such as a viroid and a virusoid, and a hammerhead-type, hairpin-type and the like are known. A hammerhead-type ribozyme nucleic acid can exhibit the enzymatic activity thereof when the length is about 40 nucleotides, and can cleave only target mRNA specifically by converting several nucleotides located in both ends adjacent to a hammerhead structure-forming part (about 10 nucleotides in total) into sequences complementary to a desired cleavage site in mRNA. The ribozyme nucleic acid of this type can utilize only RNA as the substrate thereof, and therefore has such an advantage that the ribozyme nucleic acid never attacks genomic DNA. In the case where the mRNA for the RBMS2 gene forms a double-stranded structure by itself, the target sequence can be made into a single strand by using a hybrid ribozyme to which an RNA motif derived from a viral nucleic acid and capable of binding specifically to an RNA helicase is linked [Proc. Natl. Acad. Sci. USA, 98(10): 5572-5577 (2001)]. In the case where it is intended to use the ribozyme in the form of an expression vector containing DNA encoding the ribozyme, the ribozyme may be used in the form of a hybrid ribozyme to which a tRNA-modified sequence is linked in order to accelerate the migration of a transcript into a cell cytoplasm [Nucleic Acids Res., 29(13): 2780-2788 (2001)].
The RBMS2 function inhibitor is not limited particularly, as long as the inhibitor can inhibit the function of RBMS2 protein. The wording “inhibition of the function of RBMS2 protein” refers to (x) the matter that the binding amount/level between RBMS2 and RNA containing an AU-rich element is reduced and/or (y) the matter that the amount/level of mRNA containing an AU-rich element in the 3′-UTR thereof or the amount/level of a protein derived from the mRNA in an RBMS2-overexpressing cell is reduced. Whether or not the function of RBMS2 protein is inhibited can be determined by, for example, the methods mentioned in the sections “3-2. Screening method using index (ii)” and “3-3. Screening method using index (iii)” below.
The inflammation promoting factor of which the expression is to be inhibited by the agent of the present invention is not particularly limited, as long as the inflammation promoting factor is a factor involved in the induction or worsening of an inflammatory reaction in vivo. Examples of the factor include IL-6, COX-2, IL-1β, IL-8, TNF-α, MMP1, IL-24 and c-Myc.
The agent of the present invention can be used as a prophylactic or therapeutic agent for a disease which can be developed or worsened by an inflammation promoting factor (e.g., IL-6, COX-2, IL-1β, IL-8, TNF-α, MMP1, IL-24, c-Myc). Specific examples of the disease include an immune disease, an inflammatory disease, a painful disease and the like. More specific examples of the disease to be diagnosed include an autoimmune disease, a rheumatic disease, rheumatoid arthritis, a degenerative arthritis disease, arthritis, sepsis, a lymphoproliferative disease, a demyelinating disease in the central nervous system, spondyloarthropathy, inflammatory pain, postoperative pain, allergic disease, preferably an autoimmune disease, rheumatoid arthritis, a lymphoproliferative disease, a demyelinating disease in the central nervous system, postoperative pain and an allergic disease, more preferably rheumatoid arthritis.
Examples of the autoimmune disease in the present application include, but are not limited to Guillain-Barre syndrome, ulcerative colitis, Crohn's disease, Graves' disease, rheumatoid arthritis, systemic lupus erythematosus, polymyositis, scleroderma and Sjogren's syndrome.
Examples of the rheumatic disease in the present application include, but are not limited to rheumatoid arthritis, juvenile idiopathic arthritis, systemic lupus erythematosus, scleroderma, polymyositis, vasculitis syndrome, Behcet's disease, Sjogren's syndrome and psoriatic arthritis.
Examples of the degenerative arthritis disease in the present application include, but are not limited to osteoarthritis of the knee, osteoarthritis of the hip, osteoarthritis of the elbow, osteoarthritis of the shoulder, osteoarthritis of the wrist and osteoarthritis of the foot.
Examples of the lymphoproliferative disease in the present application include, but are not limited to lymphedema, lymphadenitis, malignant lymphoma and Castleman's disease.
Examples of the demyelinating disease in the central nervous system in the present application include, but are not limited to multiple sclerosis, acute disseminated encephalomyelitis and inflammatory diffuse sclerosis.
Examples of the spondyloarthropathy in the present application include, but are not limited to ankylosing spondylitis, reactive arthritis and psoriatic arthritis.
Examples of the inflammatory pain in the present application include, but are not limited to osteoarthritis, low back pain, shoulder periarthritis, cervico-omo-brachial syndrome, flexor tenosynovitis and dental pain.
Examples of the allergic disease in the present application include, but are not limited to an allergic skin disease such as contact dermatitis, eczema, hives, Quincke's edema, erythema nodosum and atopic dermatitis, allergic rhinitis, bronchial asthma, drug allergy and food allergy.
The agent of the present invention is not particularly limited, as long as the agent contains at least one component selected from the group consisting of a RBMS2 expression inhibitor and a RBMS2 function inhibitor (wherein the component is also simply referred to as an “active ingredient” in the description). The agent may additionally contain other component, if necessary. The “other component” is not particularly limited, as long as the component is a pharmaceutically acceptable component. Examples of the “other component” include a base material, a carrier, a solvent, a dispersant, an emulsifying agent, a buffering agent, a stabilizer, an excipient, a binder, a disintegrating agent, a lubricant, a thickening agent, a moisturizing agent, a coloring agent, a fragrance and a chelating agent.
The mode of the usage of the agent of the present invention is not particularly limited, and a proper usage mode can be selected depending on the type of the agent. The agent of the present invention may be used in vitro (e.g., may be added to a culture medium for cultured cells) or may be used in vivo (e.g., may be administered to an animal).
The subject to which the agent of the present invention is to be applied is not particularly limited, and examples of the subject include various mammals such as human, monkey, mouse, rat, dog, cat, rabbit, pig, horse, cow, sheep, goat and deer; and animal cells. The type of the cell is not particularly limited, either. For example, a blood cell, a hematopoietic stem cell/progenitor cell, a gamete (a sperm, an ovum), a fibroblast, an epithelial cell, a vascular endothelial cell, a nerve cell, a liver cell, a keratin generating cell, a muscle cell, an epidermal cell, an endocrine cell, an ES cell, an iPS cell, a tissue stem cell, a cancer cell and the like can be mentioned.
The dosage form of the agent of the present invention is not particularly limited, and a proper dosage form may be selected depending on the mode of the usage of the agent. For example, in the case where it is intended to administer the agent to an animal, examples of the dosage form include an oral preparation such as a tablet, a capsule, a granule, a powder, a fine granule, a syrup, an enteric preparation, a sustained release capsule, a chewable tablet, a drop, a pill, a liquid or solution for oral application, a lozenge, a sustained-release preparation and sustained-release granule; and a preparation for cutaneous application such as a nasal preparation, an inhalation, a suppository for rectal application, a pessary, an enema and a jelly. The agent of the present invention may have any dosage form selected from a solid dosage form, a semi-solid dosage form and a liquid dosage form.
The content of the active ingredient in the agent of the present invention is not limited and varies depending on the intended use of the agent, a subject of the application of the agent, the condition of a subject of the application of the agent, and the like. The content is, for example, 0.0001 to 100% by weight, preferably 0.001 to 50% by weight.
In the case where it is intended to administer the agent to an animal, the amount/level of the agent to be administered is not particularly limited, as long as the amount/level is an amount/level effective for developing the pharmacological activity of the agent. The amount/level is generally 0.1 to 1000 mg/kg body weight per day, preferably 0.5 to 500 mg/kg body weight per day, in terms of the weight of the active ingredient for oral administration, and is generally 0.01 to 100 mg/kg body weight, preferably 0.05 to 50 mg/kg body weight per day, in terms of the weight of the active ingredient for parenteral administration. The dose amount/level is preferably administered in 1, 2 or 3 divided doses, per day, and may be increased or decreased appropriately depending on the age, clinical condition and disease conditions of a subject.
5. Diagnostic Agent
The present invention relates to a diagnostic agent for a disease in an animal, which contains a RBMS2 gene expression product detecting agent (wherein the diagnostic agent is also referred to as a “diagnostic agent of the present invention” in the present description). Hereinbelow, the diagnostic agent will be described.
The RBMS2 gene expression product which is to be detected with the RBMS2 gene expression product detecting agent is not particularly limited, as long as the RBMS2 gene expression product is one which is expressed in a living body of an organism to be diagnosed. Examples of the RBMS2 gene expression product include RBMS2 mRNA or a nucleic acid (e.g., cDNA) derived from the RBMS2 mRNA, RBMS2 protein and the like.
The animal to be diagnosed is not particularly limited, as long as the animal can express RBMS2 gene in vivo. Examples of the animal include various mammals such as human, monkey, mouse, rat, dog, cat and rabbit.
A sequence of RBMS2 mRNA and RBMS2 protein derived from various animals are known. Specific examples of RBMS2 mRNA and RBMS2 protein which are expression products of the RBMS2 genes include human RBMS2 mRNA such as mRNA consisting of the nucleotide sequence represented by SEQ ID NO: 3 (NCBI Reference Sequence: NM_002898.3); murine RBMS2 mRNA such as mRNA consisting of the nucleotide sequence represented by SEQ ID NO: 4 (NCBI Reference Sequence: NM_019711.2); human RBMS2 protein such as a protein consisting of the amino acid sequence represented by SEQ ID NO: 2 (NCBI Reference Sequence: NP_002889.1); and murine RBMS2 protein such as a protein consisting of the amino acid sequence represented by SEQ ID NO: 5 (NCBI Reference Sequence: NP_062685.2). The RBMS2 protein includes, within the scope thereof, a type in which the N-terminal is deleted. Specific examples of the RBMS2 protein of this type include a mouse-derived protein, which is consisting of the amino acid sequence represented by SEQ ID NO: 6 (NCBI Reference Sequence: NP_001034169.1) (whose mRNA is consisting of the nucleotide sequence represented by SEQ ID NO: 7 (NCBI Reference Sequence: NM_001039080.1)).
RBMS2 protein to be detected may have an amino acid mutation such as substitution, deletion, addition and insertion, as long as the RBMS2 protein can have an activity to promote the expression of mRNA having a 3′UTR derived from inflammation promoting factor mRNA (e.g., IL-6 mRNA, COX-2 mRNA, IL-8 mRNA, IL-1β mRNA, TNF-α mRNA, MMP1 mRNA, IL-24 mRNA, c-Myc mRNA) or a protein translated from the mRNA (inflammation promoting factor expression promoting activity). From the viewpoint that the inflammation promoting factor expression promoting activity is less likely to be deteriorated, the type of the mutation is preferably substitution, more preferably conservative substitution.
RBMS2 mRNA which is to be detected may have a nucleotide mutation, such as substitution, deletion, addition and insertion, as long as a protein translated from the mRNA can have an inflammation promoting factor expression promoting activity. The type of the mutation is preferably a mutation by which an amino acid substitution does not occur in a protein translated from the mRNA or a mutation by which a conservative substitution of an amino acid residue can occur.
The presence or absence of an inflammation promoting factor expression promoting activity can be determined by or in accordance with a known method. For example, this presence or absence can be determined by or in accordance with the methods described in the section “Examples”. A specific example is as follows: in Example 1B, when an expression vector for a test protein is used as the expression vector, it is determined that the test protein has an inflammation promoting factor expression promoting activity when the luciferase activity is higher than that achieved when an empty vector is used as the expression vector.
A preferred specific example of RBMS2 protein to be detected is at least one protein selected from the group consisting of a protein mentioned in (a) and a protein mentioned in (b):
(a) a protein which is consisting of an amino acid sequence represented by SEQ ID NO: 2, 5 or 6; and
(b) a protein which has 85% or more identity to an amino acid sequence represented by SEQ ID NO: 2, 5 or 6 and has an inflammation promoting factor expression promoting activity.
In (b), the degree of identity is more preferably 90% or more, further preferably 95% or more, still further preferably 98% or more.
An example of the protein mentioned in (b) is:
(b′) a protein which is consisting of an amino acid sequence having the substitution, deletion, addition or insertion of one or several amino acid residues in an amino acid sequence represented by SEQ ID NO: 2, 5 or 6 and has an inflammation promoting factor expression promoting activity.
In (b′), the wording “several amino acid residues” refers to, for example, 2 to 30 amino acid residues, preferably 2 to 10 amino acid residues, more preferably 2 to 5 amino acid residues, still further preferably 2 or 3 amino acid residues.
A preferred specific example of RBMS2 mRNA which is to be detected is at least one component selected from the group consisting of mRNA mentioned in (c) and mRNA mentioned in (d):
(c) mRNA consisting of a nucleotide sequence represented by SEQ ID NO: 3, 4 or 7; and
(d) mRNA which has 85% or more identity to a nucleotide sequence represented by SEQ ID NO: 3, 4 or 7 and encodes a protein having an inflammation promoting factor expression promoting activity.
In (d), the degree of identity is more preferably 90% or more, further preferably 95% or more, still further preferably 98% or more.
An example of the protein mentioned in (d) is:
(d′) a protein which is consisting of a nucleotide sequence having the substitution, deletion, addition or insertion of one or several nucleotides in a nucleotide sequence represented by SEQ ID NO: 3, 4 or 7 and has an inflammation promoting factor expression promoting activity.
In (d′), the wording “several nucleotides” refers to, for example, 2 to 500 nucleotides, preferably 2 to 100 nucleotides, more preferably 2 to 50 nucleotides, still further preferably 2 to 10 nucleotides.
The RBMS2 gene expression product detecting agent is not particularly limited, as long as the detection and the quantification of the RBMS2 gene expression product as mentioned above can be achieved. In the case where the RBMS2 gene expression product is a nucleic acid (e.g., RBMS2 mRNA, a nucleic acid derived therefrom (e.g., cDNA)), examples of the RBMS2 gene expression product detecting agent include a primer and a probe. In the case where the RBMS2 gene expression product is a protein, an example of the RBMS2 gene expression product detecting agent is an antibody.
The primer, the probe or the like is not particularly limited, as long as RBMS2 mRNA, a nucleic acid derived therefrom or the like can be recognized selectively (specifically). The wording “recognize (recognizing) selectively (specifically)” as used herein refers to, but is not limited to, the matter that RBMS2 mRNA can be detected specifically in a northern blotting method, the matter that RBMS2 mRNA or a nucleic acid derived therefrom (e.g., cDNA) can be amplified specifically in a RT-PCR method, for example. The primer, the probe or the like may be any one, as long as a person skilled in the art can determine that the above-mentioned detected substance or amplified product is derived from RBMS2 mRNA.
Specific examples of the primer or the probe include at least one substance selected from the group consisting of a polynucleotide mentioned in item (e) and a polynucleotide mentioned in item (f):
(e) a polynucleotide having at least 15 contiguous nucleotides in the nucleotide sequence for RBMS2 mRNA and/or a polynucleotide complementary to the polynucleotide; and
(f) a polynucleotide which can hybridize with the nucleotide sequence for RBMS2 mRNA or a nucleotide sequence complementary to the nucleotide sequence for RBMS2 mRNA under stringent conditions and has at least 15 nucleotides.
The term “a complementary polynucleotide” or “a complementary nucleotide sequence (a complementary strand, a negative strand) refers to a polynucleotide or a nucleotide sequence which is complementary to the full length sequence of a polynucleotide consisting of the nucleotide sequence for RBMS2 mRNA or a partial sequence of the full length sequence which has a nucleotide sequence consisting of at least 15 contiguous nucleotides in the above-mentioned nucleotide sequence (wherein each of the full length sequence and the partial sequence is referred to as a “positive strand” for convenience) on the basis of the nucleotide base pair relationship of A:T and G:C. In this regard, the complementary strand is not limited to one that can form a completely complementary sequence with the nucleotide sequence for the positive strand, and may also be one which has a complementary relationship with the positive strand of interest to such an extent that the complementary strand can hybridize with the positive strand under stringent conditions. The stringent conditions can be determined on the basis of the melting temperature (Tm) of a nucleic acid to which a complex or a probe is to be bonded, as taught by Berger and Kimmel (1987, Guide to Molecular Cloning Techniques Methods in Enzymology, Vol. 152, Academic Press, San Diego Calif.). For example, as the washing conditions after hybridization, the conditions around “1×SSC, 0.1% SDS, 37° C.” can be mentioned. It is preferred that the complementary strand can be maintained in such a state that the complementary strand is hybridized with the positive strand of interest even when the complementary strand is washed under these conditions. Examples of the washing conditions include, but are not limited to around “0.5×SSC, 0.1% SDS, 42° C.” as more stringent hybridization conditions, around “0.1×SSC, 0.1% SDS, 65° C.” as still more stringent conditions. Concrete examples of the complementary strand include a strand consisting of a nucleotide sequence completely complementary to the nucleotide sequence for the positive strand of interest, and a strand consisting of a nucleotide sequence having at least 90%, preferably 95%, more preferably 98% or more, further preferably 99% or more identity to the strand.
The primer, the probe or the like can be designed by utilizing a vector NTI (manufactured by Infomax) on the basis of the nucleotide sequence for RBMS2 mRNA, such as a nucleotide sequence represented by SEQ ID NO: 3, 4, or 7. Concretely, the probe or the like can be obtained by applying the nucleotide sequence for RBMS2 mRNA to software of vector NTI. It is also possible to use a candidate sequence for the primer or probe or a sequence containing at least the sequence as a part thereof, as the primer or probe.
The nucleotide length of the primer, probe or the like is not particularly limited, as long as the primer, probe or the like has a length consisting of at least contiguous 15 nucleotides as mentioned above. The length of the primer, probe or the like can be set appropriately depending on the intended use. For example, in the case where it is intended to use as a primer, the nucleotide length is, for example, 15 to 100 nucleotides, preferably 15 to 50 nucleotides, more preferably 15 to 35 nucleotides. In the case where it is intended to use as a probe, the nucleotide length is, for example, 15 nucleotides to total number of nucleotides in the entire sequence, preferably 15 to 1000 nucleotides, more preferably 100 to 1000 nucleotides.
The primer, probe or the like may be modified, as long as the function thereof cannot be impaired significantly. Examples of the modification include the addition of a labeling substance, such as a fluorescent dye, an enzyme, a protein, a radioactive isotope, a chemiluminescent substance and biotin.
As the fluorescent dye to be used in the present invention, one which can label a nucleotide and can be used for the detection or quantification of a nucleic acid can be generally used. Specific examples of the fluorescent dye include, but are not limited to HEX (4,7,2′,4′,5′,7′-hexachloro-6-carboxylfluorescein, a green fluorescent dye), fluorescein, NED (product name, manufactured by Applied Biosystems, a yellow fluorescent dye), 6-FAM (product name, manufactured by Applied Biosystems, a greenish yellow fluorescent dye), and rhodamine and a derivative thereof [e.g., tetramethyl rhodamine (TMR)]. As the method for labeling the nucleotide with a fluorescent dye, a proper method among known labeling methods can be employed [see Nature Biotechnology, 14, 303-308 (1996)]. Alternatively, a commercially available fluorescent labeling kit may also be used (e.g., an oligonucleotide ECL 3′-oligolabeling system, manufactured by Amersham Pharmacia).
The primer may also be immobilized onto an arbitrary solid phase upon use. Therefore, in the diagnostic agent of the present invention, the probe (an oligo- or polynucleotide) can be provided in the form of an immobilized probe (e.g., a DNA chip, a cDNA microarray, an oligo DNA array, a membrane filter or the like, on each of which the probe is immobilized; which are collectively named “a DNA chip or the like”, hereinafter).
The solid phase to be used for the immobilization is not particularly limited, as long as an oligo- or polynucleotide can be immobilized thereon. Specific examples of the solid phase include a glass plate, a nylon membrane, microbeads, a silicon chip, a capillary and other substrates. The immobilization of the oligo- or polynucleotide onto the solid phase may be performed by a method in which a previously synthesized oligo- or polynucleotide is applied on a solid phase or by a method in which a desired oligo- or polynucleotide is synthesized on a solid phase. The immobilization method to be employed is well known in the art depending on the type of the probe to be immobilized, such as a method in which a commercially available spotter (manufactured by Amersham) is used in a DNA microarray technique [e.g., in situ synthesis of an oligonucleotide by a photolithographic technique (Affymetrix) or an inkjet technique (Rosetta Inpharmatics)].
The antibody or the like is not particularly limited, as long as the antibody or the like can recognize RBMS2 protein selectively (specifically). The wording “recognize selectively (specifically)” refers to the matter that RBMS2 protein can be detected specifically in, for example, a western blotting method or an ELISA method. The antibody or the like is not limited to the above-mentioned one, and may be any one as long as a person skilled in the art can determine that the substance to be detected is derived from RBMS2 protein.
The antibody includes a polyclonal antibody, a monoclonal antibody, a chimeric antibody, a single-stranded antibody, or a part of the antibody which has an antigen-binding property, such as a Fab fragment and a fragment produced by a Fab expression library. An antibody having an antigen-binding property to a polypeptide generally consisting of at least contiguous 8 amino acid residues, preferably 15 amino acid residues, more preferably 20 amino acid residues, contained in the amino acid sequence for RBMS2 protein can also be included within the scope of the antibody of the present invention.
The method for producing these antibodies is already known, and the antibody of the present invention can be produced by this conventional method (Current protocols in Molecular Biology, Chapter 11.12 to 11.13(2000)). Concretely, in the case where the antibody of the present invention is a polyclonal antibody, the antibody can be obtained by using RBMS2 protein that is expressed in Escherichia coli or the like and then purified in the conventional manner, or by synthesizing an oligopeptide having a partial amino acid sequence of the RBMS2 protein in the conventional manner, then immunizing a non-human animal, e.g., a domestic rabbit, with the RBMS2 protein or the oligopeptide and then collecting the antibody from serum from the immunized animal in the conventional manner. On the other hand, in the case where the antibody is a monoclonal antibody, the antibody can be obtained by immunizing a non-human animal, e.g., a mouse, with RBMS2 protein that is expressed in Escherichia coli or the like and then purified in the conventional manner or an oligopeptide having a partial amino acid sequence of the RBMS2 protein to produce a spleen cell, then performing cell fusion of the spleen cell to a myeloma cell to prepare a hybridoma cell, and then collecting the antibody from the hybridoma cell (Current protocols in Molecular Biology edit. Ausubel et al. (1987) Publish. John Wiley and Sons. Section 11.4 to 11.11).
The RBMS2 protein to be used as an immunizing antigen in the production of the antibody can be obtained on the basis of known gene sequence information by procedures including the cloning of DNA, the construction of plasmids, the transfection into a host cell, the culture of a transformant and the collection of a protein from a culture. These procedures can be carried out by a method known to a person skilled in the art or a method disclosed in a document (Molecular Cloning, T. Maniatis et al., CSH Laboratory (1983), DNA Cloning, DM. Glover, IRL PRESS (1985)) or the like.
Concretely, a protein that can be used as an immunizing antigen for the production of the antibody of the present invention can be obtained by producing recombinant DNA (expression vector) which enables the expression of a gene encoding RBMS2 to be expressed in a desired host cell, then introducing the recombinant DNA into a host cell to transform the host cell with the recombinant DNA to produce a transformant, then culturing the transformant to produce a culture, and then collecting the desired protein from the culture. Alternatively, a partial peptide of RBMS2 protein can also be produced by a conventional chemical synthesis method (peptide synthesis) in accordance with known gene sequence information.
The antibody of the present invention may be prepared by using an oligopeptide having a partial amino acid sequence of RBMS2 protein. The oligo(poly)peptide to be used for the production of the antibody is not required to have a functional biological activity but desirably has the same immunogenic property as that of RBMS2 protein. An example of the antibody is an oligo(poly)peptide that preferably has the immunogenic property and is consisting of at least 8 contiguous amino acid residues, preferably 15 amino acid residues, more preferably 20 amino acid residues, in the amino acid sequence for the RBMS2 protein.
The production of the antibody against the oligo(poly)peptide can be achieved by enhancing an immunological reaction using any one of various adjuvants depending on a host to be used. Examples of the adjuvant include, but are not limited to Freund's adjuvant; a mineral gel such as aluminum hydroxide; a surface-active substance such as lysolecithin, pluronic polyol, a polyanion, a peptide, an oil emulsifying agent, keyhole limpet hemocyanin and dinitrophenol; and a human adjuvant such as BCG (Bacille Calmette-Guerin) and Corynebacterium parvum.
The diagnostic agent of the present invention is not particularly limited, as long as the above-mentioned RBMS2 gene expression product detecting agent is contained. The diagnostic agent may be consisting of only the detection agent, or may additionally contain a substance necessary for the detection of a RBMS2 gene expression product in addition to the detection agent. Specific examples of the substance include a hybridization reagent, a label for a probe, a detection agent for a labeled substance, a buffer solution and a device. The diagnostic agent of the present invention may be in the form of a diagnostic agent kit including the above-mentioned components.
The diseases to be diagnosed with diagnostic agent of the present invention is not particularly limited, as long as a diseases which can be developed or worsened by an inflammation promoting factor (e.g., IL-6 mRNA, COX-2 mRNA, IL-8 mRNA, IL-1β mRNA, TNF-α mRNA, MMP1 mRNA, IL-24 mRNA, c-Myc mRNA). Specific examples of the disease include an immune disease, an inflammatory disease, a painful disease and the like. More specific examples of the disease to be diagnosed include an autoimmune disease, a rheumatic disease, rheumatoid arthritis, a degenerative arthritis disease, arthritis, sepsis, a lymphoproliferative disease, a demyelinating disease in the central nervous system, spondyloarthropathy, inflammatory pain, postoperative pain, allergic disease, preferably an autoimmune disease, rheumatoid arthritis, a lymphoproliferative disease, a demyelinating disease in the central nervous system, postoperative pain and an allergic disease, more preferably rheumatoid arthritis.
Examples of the autoimmune disease in the present application include, but are not limited to Guillain-Barre syndrome, ulcerative colitis, Crohn's disease, Graves' disease, rheumatoid arthritis, systemic lupus erythematosus, polymyositis, scleroderma and Sjogren's syndrome.
Examples of the rheumatic disease in the present application include, but are not limited to rheumatoid arthritis, juvenile idiopathic arthritis, systemic lupus erythematosus, scleroderma, polymyositis, vasculitis syndrome, Behcet's disease, Sjogren's syndrome and psoriatic arthritis.
Examples of the degenerative arthritis disease in the present application include, but are not limited to osteoarthritis of the knee, osteoarthritis of the hip, osteoarthritis of the elbow, osteoarthritis of the shoulder, osteoarthritis of the wrist and osteoarthritis of the foot.
Examples of the lymphoproliferative disease in the present application include, but are not limited to lymphedema, lymphadenitis, malignant lymphoma and Castleman's disease.
Examples of the demyelinating disease in the central nervous system in the present application include, but are not limited to multiple sclerosis, acute disseminated encephalomyelitis and inflammatory diffuse sclerosis.
Examples of the spondyloarthropathy in the present application include, but are not limited to ankylosing spondylitis, reactive arthritis and psoriatic arthritis.
Examples of the inflammatory pain in the present application include, but are not limited to osteoarthritis, low back pain, shoulder periarthritis, cervico-omo-brachial syndrome, flexor tenosynovitis and dental pain.
Examples of the allergic disease in the present application include, but are not limited to an allergic skin disease such as contact dermatitis, eczema, hives, Quincke's edema, erythema nodosum and atopic dermatitis, allergic rhinitis, bronchial asthma, drug allergy and food allergy.
The diagnostic agent of the present invention can be used for the diagnosis about the occurrence of the above-mentioned disease of interest (i.e., whether or not a subject is suffering from the disease) and the diagnosis about the degree of progression of the above-mentioned disease of interest, as mentioned in the sections “2. Method for detection of disease” and “3. Method for determination of degree of progression of disease” below.
2. Method for Detection of Disease
The present invention relates to a method for detecting an immune disease, an inflammatory disease or a painful disease (which is also referred to as the “disease detection method of the present invention” in the description), using the expression amount/level of RBMS2 as an index. Hereinbelow, the method will be described.
As a specific aspect of the disease detection method of the present invention, the following aspect can be mentioned:
(a1) measuring the expression amount/level of interest of a RBMS2 gene expression product in a sample collected from a subject; and
(b1) comparing the expression amount/level of interest measured in step (a1) with a control expression amount/level of the RBMS2 gene expression product in a sample collected from a control subject which does not suffer from any one of the immune disease, the inflammatory disease and the painful disease,
wherein
(c1) the matter that the expression amount/level of interest is higher than the control expression amount/level is employed as an index for the determination that the subject has the immune disease, the inflammatory disease or the painful disease.
The subject is a target to which the disease detection method of the present invention is to be applied, and the species of the subject is not particularly limited. Examples of the subject include various mammals including human, monkey, mouse, rat, dog, cat, rabbit and the like.
The sample is not particularly limited, as long as a RBMS2 gene expression product is contained. The sample can be selected appropriately depending on the type of the disease to be detected and the like. Specific examples of the sample include a blood sample, a urine sample, and various tissue grafts. As the sample, a sample collected from a living organism may be used without any modification, and a sample produced by purifying and concentrating a RBMS2 gene expression product to be detected in the conventional manner is preferred. In the case where the RBMS2 gene expression product to be detected is a nucleic acid, it is possible to prepare a nucleic acid (e.g., cDNA) that reflects the sequence information of RBMS2 mRNA from the mRNA and use the resultant product as the sample.
The measurement of the expression amount/level of interest and the control expression amount/level of the RBMS2 gene expression product can be carried out by or in accordance with a known method. It is preferred to carry out the measurement using the diagnostic agent of the present invention mentioned below. In the case where the substance to be measured is a nucleic acid (RBMS2 mRNA or a nucleic acid derived therefrom (e.g., cDNA)), the measurement can be carried out by a northern blotting method, a RT-PCR method, a DNA chip analysis method, an in situ hybridization analysis method or the like using the nucleic acid as a probe or a primer, for example. In the case where the substance to be measured is a protein, the measurement can be carried out by a western blotting method, an ELISA method or the like using a specific antibody.
In the case where a northern blotting method is employed, the presence or absence or the amount/level of RBMS2 mRNA or a nucleic acid derived therefrom in a sample can be determined using the diagnostic agent of the present invention as a probe. Concretely, a method can be exemplified, in which the diagnostic agent of the present invention (complementary strand) is labeled with a radioactive isotope (e.g., 32P, 33P: RI), a fluorescent substance or the like, then the labeled product is hybridized with mRNA derived from a sample from a subject and transferred onto a nylon membrane or the like in the conventional manner, and then a double strand formed by the diagnostic agent and mRNA derived from the sample from the subject is subjected to the detection and measurement of a signal coming from a labeled product of the diagnostic agent (a labeling substance such as an RI or a fluorescent substance) using a radioactive ray detector BAS-1800II (manufactured by Fujifilm Corporation), a fluorescence detector or the like. Alternatively, a method may also be employed, in which the diagnostic agent is labeled using AlkPhos Direct Labelling and Detection System (manufactured by Amersham Pharmacia Biotech) in accordance with the protocol, then the labeled diagnostic agent is hybridized with mRNA derived from a sample from a subject, and then a signal coming from a labeled product of the diagnostic agent is detected and measured using a multibioimager STORM860 (manufactured by Amersham Pharmacia Biotech).
In the case where a RT-PCR method is employed, the presence or absence or the amount/level of RBMS2 mRNA or a nucleic acid derived therefrom in a sample can be determined by using the diagnostic agent of the present invention as a primer. Concretely, a method can be exemplified, in which cDNA is prepared from RNA derived from a biological tissue of a subject in the conventional manner, then a pair of primers prepared from the diagnostic agent of the present invention (i.e., a positive strand capable of binding to the cDNA (− strand), a negative strand capable of binding to + strand) are hybridized with the cDNA to perform a PCR method so that a target region can be amplified using the cDNA as a template, and then amplified double-stranded DNA thus produced is detected. For the detection of the amplified double-stranded DNA, a method in which the above-mentioned PCR is carried out using a primer that is labeled with an RI or a fluorescent substance in advance to detect labeled double-stranded DNA produced; a method in which double-stranded DNA thus produced is transferred onto a nylon membrane or the like in the conventional manner, then the labeled diagnostic agent is used as a probe and is hybridized with the double-stranded DNA, and then a hybridized product is detected; and other method can be employed. In this regard, a labeled double-stranded DNA product thus produced can be measured using an arrangement 2100 bioanalyzer (manufactured by Yokogawa Analytical Systems, Inc.) or the like. Alternatively, it is also possible to prepare a RT-PCR reaction solution using SYBR Green RT-PCR Reagents (manufactured by Applied Biosystems) in accordance with the protocol, then react the reaction solution using ABI PRISM 7700 Sequence Detection System (manufactured by Applied Biosystems), and then detect a reaction product.
In the case where DNA chip analysis is utilized, a method can be mentioned, in which a DNA chip in which the diagnostic agent of the present invention is attached as a (single-stranded or double-stranded) DNA probe is provided, then the DNA chip is hybridized with cRNA prepared from RNA derived from a biological tissue from a subject in the conventional manner to produce a double-stranded product formed from the DNA and the cRNA, then the double-stranded product is bonded to a labeling probe prepared from the diagnostic agent of the present invention, and then the bonded product is detected.
As the western blotting method, a method can be exemplified, in which the diagnostic agent of the present invention is used as a primary antibody, a labeled antibody (an antibody capable of binding to the primary antibody) that is labeled with a radioactive isotope such as 125I, a fluorescent substance, an enzyme such as horseradish peroxidase (HRP) or the like is used as a secondary antibody, and a signal coming from the labeling substance, e.g., the radioactive isotope, the fluorescent substance or the like, in the labeled compound is detected using a radioactive ray measurement device BAS-1800II (manufactured by Fujifilm Corporation), a fluorescence detector or the like. Alternatively, it is also possible to use the diagnostic agent of the present invention as a primary antibody, then the signal is detected using ECL Plus Western Blotting Detection System (manufactured by Amersham Pharmacia Biotech) in accordance with the protocol and is then measured using multibioimager STORM860 (manufactured by Amersham Pharmacia Biotech).
The control expression amount/level, which is to be compared with the expression amount/level of interest, may be a control expression amount/level of a single sample. However, it is preferred to employ an average value or a mean value of control expression amount/levels of multiple samples.
The determination whether or not a subject is suffering from an immune disease, an inflammatory disease or a painful disease is carried out by employing the matter that an expression amount/level of interest is larger compared with a control expression amount/level as a criterion. Concretely, for example, the determination can be carried out by employing, as an index, the matter that an expression amount/level of interest is increased by 50% or more, preferably 100% or more, more preferably 200% or more, relative to a control expression amount/level.
3. Method for Determination of Degree of Progression of Disease
The present invention relates to a method for determining the degree of progression of an immune disease, an inflammatory disease or a painful disease employing the expression amount/level of RBMS2 as an index (wherein the method also referred to as “the method for determining the degree of progression of the present invention” in the description). Hereinbelow, the method will be described.
As a specific aspect of the method for determining the degree of progression of the present invention, the following aspect can be mentioned:
(a2) measuring the expression amount/level of interest of a RBMS2 gene expression product in a sample collected from a subject suffering from the immune disease, the inflammatory disease or the painful disease; and
(b2) comparing the expression amount/level of interest measured in step (a2) with a control expression amount/level of a RBMS2 gene expression product in a sample collected from a control subject suffer from the immune disease, the inflammatory disease or the painful disease,
wherein
(c3) the matter that the expression amount/level of interest is larger than the control expression amount/level is employed as an index for the determination that the subject has a higher degree of progression of the immune disease, the inflammatory disease or the painful disease than that of the control subject.
The subject, the sample, the measurement of the expression amount/level of interest and the control expression amount/level, the control expression amount/level to be compared with the expression amount/level of interest, and the like are as described in the section “2. Method for detection of disease” above.
The degree of progression of a disease can be defined as the severity of a condition associated with the expression of an inflammation promoting factor such as IL-6, COX-2, IL-1β, IL-8, TNF-α, MMP1, IL-24 and c-Myc.
The determination as at whether or not the degree of progression of an immune disease, an inflammatory disease or a painful disease in a subject is higher than that in a control subject can be determined by employing, as an index, the matter that the expression amount/level of interest is higher compared with the control expression amount/level. Concretely, the determination can be carried out by employing, as an index, the matter that the expression amount/level of interest is higher compared with the control expression amount/level by 50% or more, preferably 100% or more, more preferably 200% or more.
Hereinbelow, the present invention will be described in detail with reference to examples. However, the present invention is not limited to these examples.
For the purpose of discovering an IL-6 post-transcriptional regulatory factor, screening was carried out. The schema is shown in
As a result of the secondary screening, RBMS2 (NP_002889.1, SEQ ID NO: 2) was identified as an IL-6 post-transcriptional regulatory factor.
The reporter vector produced in Example 1A or a control reporter vector which was produced by removing a human IL-6 3′UTR from the reporter vector was introduced into a HEK 293 T cell together with a RBMS2 expression vector or an empty vector. 48 hours after the transfection, a luciferase activity was measured. The results are shown in
As shown in
siRNA for RBMS2 (Human RBMS2-1 (Thermo Fisher Scientific (Ambion), Silencer Select, siRNA ID No. s11867, SEQ ID NO: 8)), or Human RBMS2-2 (Thermo Fisher Scientific (Ambion), Silencer Select, siRNA ID No. s11868, SEQ ID NO: 9), or control siRNA (Negative control (Thermo Fisher Scientific (Ambion), Silencer Select Negative Control No. 1 siRNA, Product number: 4390843)) was introduced into a MDA-MB-231 cell. 48 hours after the introduction, IL-1β was added to a culture medium (final concentration: 20 ng/ml), and the cell was collected 3 hours after the addition. In this regard, a MDA-MB-231 cell can constantly produce IL-6, and can express IL-6 in a larger amount/level upon the stimulation with IL-1β. cDNA was prepared from the cell, and the expression amount/levels of RBMS2 mRNA (PCR primer: Forward: SEQ ID NO: 12, Reverse: SEQ ID NO: 13) and IL-6 mRNA (PCR primer: Forward: SEQ ID NO: 14, Reverse: SEQ ID NO: 15) were measured by quantitative PCR. The results are shown in
As shown in
The procedure as in Example 1C was carried out, except that IL-1β was added 36 hours after the introduction, a culture supernatant was collected 16 hours after the addition, and the expression amount/level of IL-6 protein in the supernatant was measured by ELISA. The results are shown in
As shown in
A MDA-MB-231 cell was transfected by a retrovirus capable of expressing RBMS2 or a control retrovirus and was then cultured for 1 week in the presence of puromycin to produce a forcibly RBMS2-expressing cell. The cell was stimulated with IL-1β for 3 hours, then the cell was collected, and then cDNA was prepared from the cell. The expression amount/level of IL-6 mRNA in the cell was measured by quantitative PCR. The results are shown in
As shown in
A reporter vector in which an ORF of luciferase gene was arranged downstream from a promoter (SEQ ID NO: 36) for IL-6 gene was produced. The reporter vector was transfected together with a RBMS2 expression vector or an empty vector into a MDA-MB-231 cell. 48 hours after the transfection, a luciferase activity was measured. The results are shown in
As shown in
From the above-mentioned results, it was strongly suggested that RBMS2 regulated the expression of IL-6 positively through the post-transcriptional regulation of IL-6 mRNA rather than the transcriptional regulation of IL-6 mRNA.
A RBMS2 expression vector or an empty vector was transfected into a THP-1 cell. 48 hours after the transfection, LPS was added to a culture medium (final concentration: 1 μg/ml) to induce the expression of IL-6 mRNA, and then actinomycin D was added to the culture medium (final concentration: 5 μg/ml) 5 hours after the addition to terminate the synthesis of mRNA. The cells were collected 48 hours after the transfection of the expression vector, 5 hours after the addition of LPS and 3 hours after the addition of actinomycin D, and the amount/level of IL-6 mRNA was measured by quantitative PCR. The results are shown in
As shown in
A tetracycline response expression vector in which a luciferase ORF and a IL-6 3′UTR were arranged downstream from a tetracycline response factor (TRE) and a promoter in this order as observed from the 5′-side was produced. The tetracycline response expression vector was transfected together with a RBMS2 expression vector or an empty vector into a HEK293T cell having a Tet-off regulation plasmid integrated therein. 24 hours after the transfection, doxycycline was added to the culture medium (final concentration: 10 μg/ml). 24 hours after the transfection of the vector and 2 hours after the addition of doxycycline, the cell was collected, and the amount/level of luciferase mRNA was measured by quantitative PCR (PCR primer: Forward: SEQ ID NO: 16, Reverse: SEQ ID NO: 17). The results are shown in
As shown in
A mutant 3′UTR reporter vector in which a luciferase ORF and a mutant 3′UTR of IL-6 (97-267 (nucleotide sequence: SEQ ID NO: 37), 122-193 (nucleotide sequence: SEQ ID NO: 38), ΔARE1 (nucleotide sequence: SEQ ID NO: 39), ΔARE2 (nucleotide sequence: SEQ ID NO: 40) or an ARE mutant (nucleotide sequence: SEQ ID NO: 41)) were arranged downstream from a promoter in this order as observed from the 5′ region was produced. The mutant 3′UTR reporter vector was transfected into a HEK293T cell together with a RBMS2 expression vector or an empty vector. 48 hours after the transfection, a luciferase activity was measured. The results are shown in
In a 3′UTR in IL-6 mRNA, there are a stem loop structure involved in the stabilization of mRNA and an AU-rich element (ARE) that is rich in AU. The stem loop structure is an element critical for the recognition by Regnase-1 (ZC3H12A) that is an RNase and the subsequent degradation. It is reported that ARID5a contributes to the stabilization of IL-6 mRNA by antagonizing the function of Regnase-1. However, as shown in
In IL-6 mRNA, there are two adjacent AREs that are close to each other. It is known that an ARE binding protein, e.g. TTP, is involved in the degradation of mRNA through this area. As shown in
From the above-mentioned results, it was strongly suggested that RBMS2 regulated the expression of IL-6 at a post-transcriptional amount/level through a mRNA stabilization mechanism through the ARE regions.
The reporter vector produced in Example 1A (wild-type 3′UTR of IL-6 downstream from a luciferase ORF) or the ARE mutant 3′UTR reporter vector produced in Example 2C (an ARE mutant) was transfected into a HEK293T cell together with a RBMS2 expression vector labeled with FLAG. 48 hours after the introduction, the cell was collected to prepare a cell lysate. The cell lysate was immunoprecipitated with an anti-FLAG antibody or a non-specific IgG, and the amount/level of luciferase mRNA contained in an immunoprecipitation product was measured by quantitative PCR. The results are shown in
As shown in
The reporter vector produced in Example 1A (a wild-type 3′UTR of IL-6 downstream from a luciferase ORF) was transfected into a HEK293T cell together with an expression vector for FLAG-tagged wild-type RBMS2 or RRM1 domain-deleted RBMS2 (amino acid sequence: SEQ ID NO: 46). 48 hours after the transfection, the cell was collected to prepare a cell lysate. The cell lysate was immunoprecipitated with an anti-FLAG antibody or a non-specific IgG, and the amount/level of luciferase mRNA contained in the immunoprecipitation product was measured by quantitative PCR. The results are shown in
As shown in
The reporter vector produced in Example 1A (a wild-type 3′UTR of IL-6 downstream from a luciferase ORF) was transfected into a HEK 293 T cell together with an expression vector for FLAG-tagged wild-type RBMS2 or RRM domain-deleted RBMS2 (RBMS2 ΔRRM1 (amino acid sequence: SEQ ID NO: 46), RBMS2 ΔRRM2 (amino acid sequence: SEQ ID NO: 47), or RBMS2 ΔRRM1/2 (amino acid sequence: SEQ ID NO: 48)) or an empty vector. 48 hours after the introduction, a luciferase activity was measured. The results are shown in
As shown in
As mentioned above, it was suggested that RBMS2 enhanced the expression of IL-6 through the binding to an ARE occurring in a 3′UTR of IL-6 mRNA through a RRM1 domain.
siRNA for RBMS2 (Human RBMS2-1 (Thermo Fisher Scientific (Ambion), Silencer Select, siRNA ID No. s11867, SEQ ID NO: 8)), or Human RBMS2-2 (Thermo Fisher Scientific (Ambion), Silencer Select, siRNA ID No. s11868, SEQ ID NO: 9), or control siRNA (Negative control (Thermo Fisher Scientific (Ambion), Silencer Select Negative Control No. 1 siRNA, Product number: 4390843)) was introduced into a MDA-MB-231 cell. 48 hours after the introduction, IL-1β was added to the culture medium (final concentration: 20 ng/ml), and then the cell was collected 3 hours after the addition. cDNA was prepared from the cell, and the expression amount/levels of RBMS2 mRNA (PCR primer: Forward: SEQ ID NO: 12, Reverse: SEQ ID NO: 13), IL-6 mRNA (PCR primer: Forward: SEQ ID NO: 14, Reverse: SEQ ID NO: 15), PTGS2(COX-2) mRNA (PCR primer: Forward: SEQ ID NO: 20, Reverse: SEQ ID NO: 21), IL-8 mRNA (PCR primer: Forward: SEQ ID NO: 22, Reverse: SEQ ID NO: 23), IL-1β mRNA (PCR primer: Forward: SEQ ID NO: 18, Reverse: SEQ ID NO: 19), NFKBIA mRNA (PCR primer: Forward: SEQ ID NO: 24, Reverse: SEQ ID NO: 25) and ZC3H12A mRNA (PCR primer: Forward: SEQ ID NO: 26, Reverse: SEQ ID NO: 27) were measured by quantitative PCR. The results are shown in
As shown in
siRNA for RBMS2 (Mouse RBMS2-1 (Thermo Fisher Scientific (Ambion), Silencer Select, siRNA ID No. s80716, SEQ ID NO: 10), or Mouse RBMS2-2 (Thermo Fisher Scientific (Ambion), Silencer Select, siRNA ID No. s80717, SEQ ID NO: 11)), or control siRNA (Negative control (Thermo Fisher Scientific (Ambion), Silencer Select Negative Control No. 1 siRNA, Product number: 4390843)) was introduced into a MEF cell. 48 hours after the introduction, LPS, Pam3CSK4 or IL-1β was added to a culture medium (final concentration of LPS: 1 μg/ml, final concentration of Pam3CSK4: 1 μg/ml, or final concentration of IL-1β: 20 ng/ml), and then the cell was collected 3 hours after the addition. cDNA was prepared from the cell, and the expression amount/levels of RBMS2 mRNA (PCR primer: Forward: SEQ ID NO: 28, Reverse: SEQ ID NO: 29), IL-6 mRNA (PCR primer: Forward: SEQ ID NO: 30, Reverse: SEQ ID NO: 31), IL-1β mRNA (PCR primer: Forward: SEQ ID NO: 32, Reverse: SEQ ID NO: 33) and TNF-α mRNA (PCR primer: Forward: SEQ ID NO: 34, Reverse: SEQ ID NO: 35) were measured by quantitative PCR. The results are shown in
As shown in
A reporter vector in which a luciferase ORF, a 3′UTR (a wild-type 3′UTR of IL-8 (nucleotide sequence: SEQ ID NO: 42), an ARE mutant 3′UTR of IL-8 (nucleotide sequence: SEQ ID NO: 43), a wild-type 3′UTR of IL-1β (nucleotide sequence: SEQ ID NO: 44) and an ARE mutant 3′UTR of IL-1β (nucleotide sequence: SEQ ID NO: 45)) were arranged downstream from a promoter in this order as observed from the 5′-side was produced. The reporter vector thus produced, the reporter vector produced in Example 1A (a wild-type 3′UTR of IL-6 downstream from a luciferase ORF), or the IL-6 ARE mutant 3′UTR reporter vector (ARE mutant) produced in Example 2C was transfected into a HEK293T cell together with a RBMS2 expression vector or an empty vector. 48 hours after the introduction, a luciferase activity was measured. The results are shown in
As shown in
From the above-mentioned results, it was demonstrated that RBMS2 was involved in not only the regulation of IL-6 mRNA but also the regulation of mRNA having an ARE. It was also demonstrated that the expression amount/level of an inflammation promoting factor such as IL-6 mRNA was able to be decreased by inhibiting RBMS2.
A RBMS2-deficient mouse was produced by genome editing using TALEN. As a result, a mutant mouse from which 110 nucleotides including the second exon were deleted was produced successfully. The production scheme is illustrated in
A cell obtained from bone marrow of a RBMS2 homozygously deficient mouse, a RBMS2 heterozygously deficient mouse or a wild-type mouse was cultured for 7 days in the presence of M-CSF to produce a bone marrow-derived macrophage (BMDM). LPS (final concentration: 100 ng/ml), Pam3CSK4 (final concentration: 300 ng/ml) or poly I:C (final concentration: 10 μg/ml) was added to a culture medium of the BMDM. The cells were collected before the addition or 1 hour, 3 hours, 5 hours or 9 hours after the addition, and the expression amount/level of IL-6 was measured by quantitative PCR. The results are shown in
As shown in
The same procedure as in Example 5B was carried out, except that Pam3CSK4 was added to a BMDM culture medium and the expression amount/levels of IL-1β, COX-2 and TNF-α were measured.
As shown in
LPS (15 mg/kg) was administered intraperitoneally to each of PBMS2 homozygously deficient mice (n=7) or wild-type mice (n=5). 5 hours after the administration, serum was collected, and the survival time of each mouse was measured. The concentration of IL-6 in the serum was measured by quantitative PCR. The results of the measurement of the survival time are shown in
As shown in
RNA was reverse-transcribed from a peripheral blood mononuclear cell from each of rheumatoid arthritis patients (n=12), and then the expression amount/levels of RBMS2 and IL-6 were measured by quantitative PCR. The results are shown in
As shown in
With taking the fact that the expression amount/level of IL-6 in a non-rheumatoid arthritis patient was lower than that in a rheumatoid arthritis patient and the fact that the expression amount/level of IL-6 in a rheumatoid arthritis patient correlated with the degree of progression of the disease into consideration, these results suggested that it was possible to diagnose rheumatoid arthritis (with respect to the occurrence of the disease, the degree of progression of the disease) employing the expression amount/level of RBMS2 as an index.
IL-10 protein or TGFβ protein was added to a culture medium of a Jurkat cell that was a human T cell strain (final concentration: IL-10 protein→20 ng/mL, TGFβ protein→10 ng/mL). cDNA from the cell before the addition and 8 hours after the addition and 24 hours after the addition was prepared, and the expression amount/levels of RBMS2 mRNA and HPRT (control) mRNA were measured by quantitative PCR. The results are shown in
As shown in
From the results of Example 4C, it was demonstrated that the activity of RBMS2 depended on an AU-rich element (ARE) rather than a stem loop structure in IL-6 3′UTR. On the other hand, it has been reported that HuR can positively regulate the expression of an inflammatory cytokine through an ARE, and therefore it has been believed that the role of HuR is similar to that of RBMS2. Then, the activities of RBMS2 and HuR were compared with each other by a luciferase assay.
Concretely, a reporter vector in which a luciferase ORF and an IL-6 3′UTR or PTGS2 (COX-2) 3′UTR were arranged downstream from a promoter in this order as observed from the 5′-region was produced. The reporter vector was transfected into a HEK293T cell together with a RBMS2 expression vector, a HuR expression vector or an empty vector. 48 hours after the transfection, a luciferase activity was measured. The results are shown in
As a result, it was demonstrated that, when an IL-6 3′UTR was used, the luciferase activity was enhanced by RBMS2, while that types of enhancement was not observed when HuR was used. When a PTGS2 (COX-2) 3′UTR, on which it has been reported that HuR can act, was used, although the enhancement of the luciferase activity was observed by HuR, it was found that RBMS2 enhanced the activity more strongly compared with HuR. These results strongly suggested that RBMS2 targeted different mRNA from mRNA targeted by HuR and had stronger activity against the same target mRNA than HuR.
Heretofore, it has been reported that a β-sheet in a RRM domain is essential for a RNA binding activity and an aromatic amino acid is necessary for the formation of the β-sheet. Then, a protein β-sheet in a RRM1 domain was estimated using a secondary structure estimation program, and an expression vector for a mutant of the β-sheet in which an amino acid was mutated. The expression vector or an empty vector was trasfected into a MDA-MB-231 cell together with the reporter vector produced in Example 1A (a wild-type 3′UTR of IL-6 downstream from a luciferase ORF). 48 hours after the transfection, a luciferase activity was measured. The results are shown in
As a result, it was demonstrated that two phenylalanine residues (F101 and F104) in a RRM1 domain were required for the enhancement of a reporter activity by RBMS2.
A lentivirus capable of expression a F101/F104A mutant was transfected into a MDA-MB-231 cell, cDNA was prepared from the cell after 5 days, and the expression amount/levels of IL-6 mRNA and IL-8 mRNA were measured by quantitative PCR. The results are shown in
As shown in
The reporter vector produced in Example 1A (a wild-type 3′UTR of IL-6 downstream from a luciferase ORF) was transfected into a HEK 293 T cell together with an expression vector for a FLAG-tagged F101/F104A mutant. 48 hours after the transfection, the cell was collected to prepare a cell lysate. The cell lysate was immunoprecipitated with an anti-FLAG antibody or a non-specific IgG, and the amount/level of luciferase mRNA contained in the immunoprecipitation product was measured by quantitative PCR. The results are shown in
As shown in
A 2,4-dinitrofluorobenzene solution (wherein a solvent was a mixed solution of acetone and olive oil (acetone 4: olive oil 1)) was applied onto an abdominal part of each of RBMS2 homozygously deficient mice (n=15). After 1 week, a 2,4-dinitrofluorobenzene solution (wherein a solvent was a mixed solution of acetone and olive oil (acetone 4: olive oil 1)) or only the mixed solvent was applied onto an ear of each of the mice. After 6 hours, the thickness of the auricle was measured, and a value obtained by subtracting the thickness of the auricle before the test from the measured value was employed as an index for the swelling of the auricle. The results are shown in
As shown in
A MDA-MB-231 cell was transfected with siRNA for a negative control or RBMS2 (n=3 for each). After 48 hours, RNA was prepared, an RNA sequencing library was prepared in accordance with a protocol (Illumina, Inc.), and RNA sequencing was carried out using Next-seq. Genes each of which the expression amount/level increased two-fold or more or decreased two-fold or more by the knockdown of RBMS2 are shown in
As shown in
As demonstrated in Examples 1 to 12 above, RBMS2 regulated the expression of IL-6 as well as the expression of other inflammation promoting factors (genes each having an ARE in a 3′ UTR thereof, such as IL-1β, IL-8, COX-2, TNF-α, MMP1, IL-24 and c-Myc). Therefore, it was suggested that it became possible to diagnose the occurrence and the degree of progression of a disease of which the development and progression was associated with any one of these inflammation promoting factors (e.g., an immune disease, an inflammatory disease, a painful disease) by employing the expression amount/level of RBMS2 as an index.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2016-094931 | May 2016 | JP | national |
| 2016-162120 | Aug 2016 | JP | national |
This application is a divisional of U.S. application Ser. No. 16/300,442, filed Nov. 9, 2018, which is a national phase entry pursuant to 35 U.S.C. § 371 of International Application No. PCT/JP2017/017640, filed May 10, 2017, which claims the benefit of priority of JP Application Nos. 2016-094931, filed May 10, 2016, and 2016-162120, filed Aug. 22, 2016, each of which is incorporated by reference herein in its entirety for any purpose.
| Number | Date | Country | |
|---|---|---|---|
| Parent | 16300442 | Nov 2018 | US |
| Child | 16913376 | US |
