Expression vectors for stimulating an immune response and methods of using the same

Abstract

The present invention relates to nucleic acid vaccines encoding multiple CTL and HTL epitopes and MHC targeting sequences.

Description

FIELD OF THE INVENTION

SUBMISSION ON COMPACT DISC

The contents of the following submission on compact discs are incorporated herein by reference in its entirety: A compact disc copy of the substitute Sequence Listing (COPY 1) (file name: 3996320022.txt, date recorded: Jan. 4, 2002, size:199 KB); a duplicate compact disc copy of the substitute Sequence Listing (COPY 2) (file name: 3996320022.txt, date recorded: Jan. 4, 2002, size: 199 KB); a computer readable form copy of the substitute Sequence Listing (CRF COPY) (file name: 3996320022.txt, date recorded: Jan. 4, 2002, size: 199 KB).

The present invention relates to nucleic acid vaccines encoding multiple CTL and HTL epitopes and MHC targeting sequences.

BACKGROUND OF THE INVENTION

Vaccines are of fundamental importance in modern medicine and have been highly effective in combating certain human diseases. However, despite the successful implementation of vaccination programs that have greatly limited or virtually eliminated several debilitating human diseases, there are a number of diseases that affect millions worldwide for which effective vaccines have not been developed.

Major advances in the field of immunology have led to a greater understanding of the mechanisms involved in the immune response and have provided insights into developing new vaccine strategies (Kuby, Immunology, 443-457 (3rd ed., 1997), which is incorporated herein by reference). These new vaccine strategies have taken advantage of knowledge gained regarding the mechanisms by which foreign material, termed antigen, is recognized by the immune system and eliminated from the organism. An effective vaccine is one that elicits an immune response to an antigen of interest.

Specialized cells of the immune system are responsible for the protective activity required to combat diseases. An immune response involves two major groups of cells, lymphocytes, or white blood cells, and antigen-presenting cells. The purpose of these immune response cells is to recognize foreign material, such as an infectious organism or a cancer cell, and remove that foreign material from the organism.

Two major types of lymphocytes mediate different aspects of the immune response. B cells display on their cell surface specialized proteins, called antibodies, that bind specifically to foreign material, called antigens. Effector B cells produce soluble forms of the antibody, which circulate throughout the body and function to eliminate antigen from the organism. This branch of the immune system is known as the humoral branch. Memory B cells function to recognize the antigen in future encounters by continuing to express the membrane-bound form of the antibody.

A second major type of lymphocyte is the T cell. T cells also have on their cell surface specialized proteins that recognize antigen but, in contrast to B cells, require that the antigen be bound to a specialized membrane protein complex, the major histocompatibility complex (MHC), on the surface of an antigen-presenting cell. Two major classes of T cells, termed helper T lymphocytes (“HTL”) and cytotoxic T lymphocytes (“CTL”), are often distinguished based on the presence of either CD4 or CD8 protein, respectively, on the cell surface. This branch of the immune system is known as the cell-mediated branch.

The second major class of immune response cells are cells that function in antigen presentation by processing antigen for binding to MHC molecules expressed in the antigen presenting cells. The processed antigen bound to MHC molecules is transferred to the surface of the cell, where the antigen-MHC complex is available to bind to T cells.

MHC molecules can be divided into MHC class I and class II molecules and are recognized by the two classes of T cells. Nearly all cells express MHC class I molecules, which function to present antigen to cytotoxic T lymphocytes. Cytotoxic T lymphocytes typically recognize antigen bound to MHC class I. A subset of cells called antigen-presenting cells express MHC class II molecules. Helper T lymphocytes typically recognize antigen bound to MHC class II molecules. Antigen-presenting cells include dendritic cells, macrophages, B cells, fibroblasts, glial cells, pancreatic beta cells, thymic epithelial cells, thyroid epithelial cells and vascular endothelial cells. These antigen-presenting cells generally express both MHC class I and class II molecules. Also, B cells function as both antibody-producing and antigen-presenting cells.

Once a helper T lymphocyte recognizes an antigen-MHC class II complex on the surface of an antigen-presenting cell, the helper T lymphocyte becomes activated and produces growth factors that activate a variety of cells involved in the immune response, including B cells and cytotoxic T lymphocytes. For example, under the influence of growth factors expressed by activated helper T lymphocytes, a cytotoxic T lymphocyte that recognizes an antigen-MHC class I complex becomes activated. CTLs monitor and eliminate cells that display antigen specifically recognized by the CTL, such as infected cells or tumor cells. Thus, activation of helper T lymphocytes stimulates the activation of both the humoral and cell-mediated branches of the immune system.

An important aspect of the immune response, in particular as it relates to vaccine efficacy, is the manner in which antigen is processed so that it can be recognized by the specialized cells of the immune system. Distinct antigen processing and presentation pathways are utilized. The one is a cytosolic pathway, which results in the antigen being bound to MHC class I molecules. An alternative pathway is an endoplasmic reticulum pathway, which bypasses the cytosol. Another is an endocytic pathway, which results in the antigen being bound to MHC class II molecules. Thus, the cell surface presentation of a particular antigen by a MHC class II or class I molecule to a helper T lymphocyte or a cytotoxic T lymphocyte, respectively, is dependent on the processing pathway for that antigen.

The cytosolic pathway processes endogenous antigens that are expressed inside the cell. The antigen is degraded by a specialized protease complex in the cytosol of the cell, and the resulting antigen peptides are transported into the endoplasmic reticulum, an organelle that processes cell surface molecules. In the endoplasmic reticulum, the antigen peptides bind to MHC class I molecules, which are then transported to the cell surface for presentation to cytotoxic T lymphocytes of the immune system.

Antigens that exist outside the cell are processed by the endocytic pathway. Such antigens are taken into the cell by endocytosis, which brings the antigens into specialized vesicles called endosomes and subsequently to specialized vesicles called lysosomes, where the antigen is degraded by proteases into antigen peptides that bind to MHC class II molecules. The antigen peptide-MHC class II molecule complex is then transported to the cell surface for presentation to helper T lymphocytes of the immune system.

A variety of factors must be considered in the development of an effective vaccine. For example, the extent of activation of either the humoral or cell-mediated branch of the immune system can determine the effectiveness of a vaccine against a particular disease. Furthermore, the development of immunologic memory by inducing memory-cell formation can be important for an effective vaccine against a particular disease (Kuby, supra). For example, protection from infectious diseases caused by pathogens with short incubation periods, such as influenza virus, requires high levels of neutralizing antibody generated by the humoral branch because disease symptoms are already underway before memory cells are activated. Alternatively, protection from infectious diseases caused by pathogens with long incubation periods, such as polio virus, does not require neutralizing antibodies at the time of infection but instead requires memory B cells that can generate neutralizing antibodies to combat the pathogen before it is able to infect target tissues. Therefore, the effectiveness of a vaccine at preventing or ameliorating the symptoms of a particular disease depends on the type of immune response generated by the vaccine.

Many traditional vaccines have relied on intact pathogens such as attenuated or inactivated viruses or bacteria to elicit an immune response. However, these traditional vaccines have advantages and disadvantages, including reversion of an attenuated pathogen to a virulent form. The problem of reversion of an attenuated vaccine has been addressed by the use of molecules of the pathogen rather than the whole pathogen. For example, immunization approaches have begun to incorporate recombinant vector vaccines and synthetic peptide vaccines (Kuby, supra). Recently, DNA vaccines have also been used (Donnelly et al., Annu. Rev. Immunol. 15:617-648 (1997), which is incorporated herein by reference). The use of molecules of a pathogen provides safe vaccines that circumvent the potential for reversion to a virulent form of the vaccine.

The targeting of antigens to MHC class II molecules to activate helper T lymphocytes has been described using lysosomal targeting sequences, which direct antigens to lysosomes, where the antigen is digested by lysosomal proteases into antigen peptides that bind to MHC class II molecules (U.S. Pat. No. 5,633,234; Thomson et al., J. Virol. 72:2246-2252 (1998)). It would be advantageous to develop vaccines that deliver multiple antigens while exploiting the safety provided by administering individual epitopes of a pathogen rather than a whole organism. In particular, it would be advantageous to develop vaccines that effectively target antigens to MHC class II molecules for activation of helper T lymphocytes.

Several studies also point to the crucial role of cytotoxic T cells in both production and eradication of infectious diseases and cancer by the immune system (Byrne et al., J. Immunol. 51:682 (1984); McMichael et al., N. Engl. J. Med. 309:13 (1983)). Recombinant protein vaccines do not reliably induce CTL responses, and the use of otherwise immunogenic vaccines consisting of attenuated pathogens in humans is hampered, in the case of several important diseases, by overriding safety concerns. In the case of diseases such as HIV, HBV, HCV, and malaria, it appears desirable not only to induce a vigorous CTL response, but also to focus the response against highly conserved epitopes in order to prevent escape by mutation and overcome variable vaccine efficacy against different isolates of the target pathogen.

Induction of a broad response directed simultaneously against multiple epitopes also appears to be crucial for development of efficacious vaccines. HIV infection is perhaps the best example where an infected host may benefit from a multispecific response. Rapid progression of HIV infection has been reported in cases where a narrowly focused CTL response is induced whereas nonprogressors tend to show a broader specificity of CTLs (Goulder et al., Nat. Med. 3:212 (1997); Borrow et al., Nat. Med. 3:205 (1997)). The highly variable nature of HIV CTL epitopes resulting from a highly mutating genome and selection by CTL responses directed against only a single or few epitopes also supports the need for broad epitope CTL responses (McMichael et al., Annu. Rev. Immunol. 15:271 (1997)).

One potential approach to induce multispecific responses against conserved epitopes is immunization with a minigene plasmid encoding the epitopes in a string-of-beads fashion. Induction of CTL, HTL, and B cell responses in mice by minigene plasmids have been described by several laboratories using constructs encoding as many as 11 epitopes (An et al., J. Virol. 71:2292 (1997); Thomson et al., J. Immunol. 157:822 (1996); Whitton et al., J. Virol. 67:348 (1993); Hanke et al., Vaccine 16:426 (1998); Vitiello et al., Eur. J. Immunol. 27:671-678 (1997)). Minigenes have been delivered in vivo by infection with recombinant adenovirus or vaccinia, or by injection of purified DNA via the intramuscular or intradermal route (Thomson et al., J. Immunol: 160:1717 (1998); Toes et al., Proc. Natl. Acad. Sci. USA 94:14660 (1997)).

Successful development of minigene DNA vaccines for human use will require addressing certain fundamental questions dealing with epitope MHC affinity, optimization of constructs for maximum in vivo immunogenicity, and development of assays for testing in vivo potency of multi-epitope minigene constructs. Regarding MHC binding affinity of epitopes, it is not currently known whether both high and low affinity epitopes can be included within a single minigene construct, and what ranges of peptide affinity are permissible for CTL induction in vivo. This is especially important because dominant epitopes can vary in their affinity and because it might be important to be able to deliver mixtures of dominant and subdominant epitopes that are characterized by high and low MHC binding affinities.

With respect to minigene construct optimization for maximum immunogenicity in vivo, conflicting data exists regarding whether the exact position of the epitopes in a given construct or the presence of flanking regions, helper T cell epitopes, and signal sequences might be crucial for CTL induction (Del Val et al., Cell 66:1145 (1991); Bergmann et al., J. Virol. 68:5306 (1994); Thomson et al., Proc. Natl. Acad. Sci. USA 92:5845 (1995); Shirai et al., J. Infect. Dis. 173:24 (1996); Rahemtulla et al., Nature 353:180 (1991); Jennings et al., Cell. Immunol. 133:234 (1991); Anderson et al., J. Exp. Med. 174:489 (1991); Uger et al., J. Immunol. 158:685 (1997)). Finally, regarding development of assays that allow testing of human vaccine candidates, it should be noted that, to date, all in vivo immunogenicity data of multi-epitope minigene plasmids have been performed with murine class I MHC-restricted epitopes. It would be advantageous to be able to test the in vivo immunogenicity of minigenes containing human CTL epitopes in a convenient animal model system.

Thus, there exists a need to develop methods to effectively deliver a variety of HTL (helper T lymphocyte) and CTL (cytotoxic T lymphocyte) antigens to stimulate an immune response. The present invention satisfies this need and provides related advantages as well.

SUMMARY OF THE INVENTION

The invention therefore provides expression vectors encoding two or more HTL epitopes fused to a MHC class II targeting sequence, as well as expression vectors encoding a CTL epitope and a universal HTL epitope fused to an MHC class I targeting sequence. The HTL epitope can be a universal HTL epitope (also referred to as a universal MHC class II epitope). The invention also provides expression vectors encoding two or more HTL epitopes fused to a MHC class II targeting sequence and encoding one or more CTL epitopes. The invention additionally provides methods of stimulating an immune response by administering an expression vector of the invention in vivo, as well as methods of assaying the human immunogenicity of a human T cell peptide epitope in vivo in a non-human mammal.

In one aspect, the present invention provides an expression vector comprising a promoter operably linked to a first nucleotide sequence encoding a major histocompatibility (MHC) targeting sequence fused to a second nucleotide sequence encoding two or more heterologous peptide epitopes, wherein the heterologous peptide epitopes comprise two HTL peptide epitopes or a CTL peptide epitope and a universal HTL peptide epitope.

In another aspect, the present invention provides a method of inducing an immune response in vivo comprising administering to a mammalian subject an expression vector comprising a promoter operably linked to a first nucleotide sequence encoding a major histocompatibility (MHC) targeting sequence fused to a second nucleotide sequence encoding two or more heterologous peptide epitopes, wherein the heterologous peptide epitopes comprise two HTL peptide epitopes or a CTL peptide epitope and a universal HTL peptide epitope.

In another aspect, the present invention provides a method of inducing an immune response in vivo comprising administering to a mammalian subject an expression vector comprising a promoter operably linked to a first nucleotide sequence encoding a major histocompatibility (MHC) targeting sequence fused to a second nucleotide sequence encoding a heterologous human HTL peptide epitope.

In another aspect, the present invention provides a method of assaying the human immunogenicity of a human T cell peptide epitope in vivo in a non-human mammal, comprising the step of administering to the non-human mammal an expression vector comprising a promoter operably linked to a first nucleotide sequence encoding a heterologous human CTL or HTL peptide epitope.

In one embodiment, the heterologous peptide epitopes comprise two or more heterologous HTL peptide epitopes. In another embodiment, the heterologous peptide epitopes comprise a CTL peptide epitope and a universal HTL peptide epitope. In another embodiment, the heterologous peptide epitopes further comprise one to two or more heterologous CTL peptide epitopes. In another embodiment, the expression vector comprises both HTL and CTL peptide epitopes.

In one embodiment, one of the HTL peptide epitopes is a universal HTL epitope. In another embodiment, the universal HTL epitope is a pan DR epitope. In another embodiment, the pan DR epitope has the sequence AlaLysPheValAlaAlaTrpThrLeuLysAlaAlaAla (SEQ ID NO:52)

In one embodiment, the peptide epitopes are hepatitis B virus epitopes, hepatitis C virus epitopes, human immunodeficiency virus epitopes, human papilloma virus epitopes, MAGE epitopes, PSA epitopes, PSM epitopes, PAP epitopes, p53 epitopes, CEA epitopes, Her2/neu epitopes, or Plasmodium epitopes. In another embodiment, the peptide epitopes each have a sequence selected from the group consisting of the peptides depicted in Tables 1-8. In another embodiment, at least one of the peptide epitopes is an analog of a peptide depicted in Tables 1-8.

In one embodiment, the MHC targeting sequence comprises a region of a polypeptide selected from the group consisting of the Ii protein, LAMP-I, HLS-DM, HLA-DO, H2-DO, influenza matrix protein, hepatitis B surface antigen, hepatitis B virus core antigen, Ty particle, Ig-α protein, Ig-β protein, and Ig kappa chain signal sequence.

In one embodiment, the expression vector further comprises a second promoter sequence operably linked to a third nucleotide sequence encoding one or more heterologous HTL or CTL peptide epitopes. In another embodiment, the CTL peptide epitope comprises a structural motif for an HLA supertype, whereby the peptide CTL epitope binds to two or more members of the supertype with an affinity of greater that 500 nM. In another embodiment, the CTL peptide epitopes have structural motifs that provide binding affinity for more than one HLA allele supertype.

In one embodiment, the non-human mammal is a transgenic mouse that expresses a human HLA allele. In another embodiment, the human HLA allele is selected from the group consisting of AI I and A2. 1. In another embodiment, the non-human mammal is a macaque that expresses a human HLA allele.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 shows the nucleotide and amino acid sequences (SEQ ID NOS: 1 and 2, respectively) of the IiPADRE construct encoding a fusion of the murine Ii gene with a pan DR epitope sequence substituted for the CLIP sequence of the Ii protein.

FIG. 2 shows the nucleotide and amino acid sequences (SEQ ID NOS:3 and 4, respectively) of the I80T construct encoding a fusion of the cytoplasmic domain, the transmembrane domain and part of the luminal domain of the Ii protein fused to multiple MHC class II epitopes.

FIG. 3 shows the nucleotide and amino acid sequences (SEQ ID NOS:5 and 6, respectively) of the IiThfull construct encoding a fusion of the cytoplasmic domain, transmembrane domain and a portion of the luminal domain of the Ii protein fused to multiple T helper epitopes and amino acid residues 101 to 215 of the Ii protein, which encodes the trimerization region of the Ii protein.

FIG. 4 shows the nucleotide and amino acid sequences (SEQ ID NOS:7 and 8, respectively) of the KappaLAMP-Th construct encoding a fusion of the murine immunoglobulin kappa signal sequence fused to multiple T helper epitopes and the transmembrane and cytoplasmic domains of LAMP-1.

FIG. 5 shows the nucleotide and amino acid sequences (SEQ ID NOS:9 and 10, respectively) of the H2M-Th construct encoding a fusion of the signal sequence of H2-M fused to multiple MHC class II epitopes and the transmembrane and cytoplasmic domains of H2-M.

FIG. 6 shows the nucleotide and amino acid sequences (SEQ ID NOS:11 and 12, respectively) of the H20-Th construct encoding a fusion of the signal sequence of H2-DO fused to multiple MHC class II epitopes and the transmembrane and cytoplasmic domains of H2-DO.

FIG. 7 shows the nucleotide and amino acid sequences (SEQ ID NOS:13 and 14, respectively) of the PADRE-Influenza matrix construct encoding a fusion of a pan DR epitope sequence fused to the amino-terminus of influenza matrix protein.

FIG. 8 shows the nucleotide and amino acid sequences (SEQ ID NOS:15 and 16, respectively) of the PADRE-HBV-s construct encoding a fusion of a pan DR epitope sequence fused to the amino-terminus of hepatitis B virus surface antigen.

FIG. 9 shows the nucleotide and amino acid sequences (SEQ ID NOS:17 and 18, respectively) of the Ig-alphaTh construct encoding a fusion of the signal sequence of the Ig-a protein fused to multiple MHC class II epitopes and the transmembrane and cytoplasmic domains of the Ig-α protein.

FIG. 10 shows the nucleotide and amino acid sequences (SEQ ID NOS:19 and 20, respectively) of the Ig-betaTh construct encoding a fusion of the signal sequence of the Ig-β protein fused to multiple MHC class II epitopes and the transmembrane and cytoplasmic domains of the Ig-β protein.

FIG. 11 shows the nucleotide and amino acid sequences (SEQ ID NOS:21 and 22, respectively) of the SigTh construct encoding a fusion of the signal sequence of the kappa immunoglobulin fused to multiple MHC class II epitopes.

FIG. 12 shows the nucleotide and amino acid sequences (SEQ ID NOS:23 and 24, respectively) of human HLA-DR, the invariant chain (Ii) protein.

FIG. 13 shows the nucleotide and amino acid sequences (SEQ ID NOS:25 and 26, respectively) of human lysosomal membrane glycoprotein-1 (LAMP-1).

FIG. 14 shows the nucleotide and amino acid sequences (SEQ ID NOS:27 and 28, respectively) of human HLA-DMB.

FIG. 15 shows the nucleotide and amino acid sequences (SEQ ID NOS:29 and 30, respectively) of human HLA-DO beta.

FIG. 16 shows the nucleotide and amino acid sequences (SEQ ID NOS:31 and 32, respectively) of the human MB-1 Ig-α.

FIG. 17 shows the nucleotide and amino acid sequences (SEQ ID NOS:33 and 34, respectively) of human Ig-β protein.

FIG. 18 shows a schematic diagram depicting the method of generating some of the constructs encoding a MHC class II targeting sequence fused to multiple MHC class II epitopes.

FIG. 19 shows the nucleotide sequence of the vector pEP2 (SEQ ID NO:35).

FIG. 20 shows the nucleotide and amino acid sequences of the vector pMIN.0 (SEQ ID NO:36 and 37, respectively).

FIG. 21 shows the nucleotide and amino acid sequences of the vector pMIN.0 (SEQ ID NO:38 and 39, respectively).

FIG. 22 . Representative CTL responses in HLA-A2.1/K b -H-2 bxs mice immunized with pMin.1 DNA. Splenocytes from primed animals were cultured in triplicate flasks and stimulated twice in vitro with each peptide epitope. Cytotoxicity of each culture was assayed in a 51 Cr release assay against Jurkat-A2.1/K b target cells in the presence (filled symbols, solid lines) or absence (open symbols, dotted lines) of peptide. Each symbol represents the response of a single culture.

FIG. 23 . Presentation of viral epitopes to specific CTLs by Jurkat-A2.1K b tumor cells transfected with DNA minigene. Two constructs were used for transfection, pMin.1 and pMin.2-GFP. pMin.2-GFP-transfected targets cells were sorted by FACS and the population used in this experiment contained 60% fluorescent cells. CTL stimulation was measured by quantitating the amount of IFN-γ release (A, B) or by lysis of 51 Cr-labeled target cells (C, D, hatched bars). CTLs were stimulated with transfected cells (A, C) or with parental Jurkat-A2.1/K b cells in the presence of 1 μg/ml peptide (B, D). Levels of IFN-γ release and cytotoxicity for the different CTL lines in the absence of epitope ranged from 72-126 pg/ml and 2-6% respectively.

FIG. 24 . Summary of modified minigene constructs used to address variables critical for in vivo immunogenicity. The following modifications were incorporated into the prototype pMin. 1 construct; A, deletion of PADRE HTL epitope; B, incorporation of the native HBV Pol 551 epitope that contains an alanine in position 9; C, deletion of the Ig kappa signal sequence; and D, switching position of the HBV Env 335 and HBV Pol 455 epitopes.

FIG. 25 . Examination of variables that may influence pMin. 1 immunogenicity. In vivo CTL-inducing activity of pMin.1 is compared to modified constructs. For ease of comparison, the CTL response induced by each of the modified DNA minigene constructs (shaded bars) is compared separately in each of the four panels to the response induced by the prototype pMin.1 construct (solid bars). The geometric mean response of CTL-positive cultures from two to five independent experiments are shown. Numbers shown with each bar indicate the number of positive cultures/total number tested for that particular epitope. The ratio of positive cultures/total tested for the pMin. 1 group is shown in panel A and is the same for the remaining Figure panels (see Example V, Materials and Methods, in vitro CTL cultures, for the definition of a positive CTL culture). Theradigm responses were obtained by immunizing animals with the lipopeptide and stimulating and testing splenocyte cultures with the HBV Core 18-27 peptide.

DEFINITIONS

An “HTL” peptide epitopeor an “MHC II epitope” is an MHC class II restricted epitope, i.e., one that is bound by an MHC class II molecule.

A “CTL” peptide epitope or an “MHC I epitope” is an MHC class I restricted epitope, i.e., one that is bound by an MHC class I molecule.

An “MHC targeting sequence” refers to a peptide sequence that targets a polypeptide, e.g., comprising a peptide epitope, to a cytosolic pathway (e.g., an MHC class I antigen processing pathway), en endoplasmic reticulum pathwasy, or an endocytic pathway (e.g., an MHC class II antigen processing pathway).

The term “heterologous” when used with reference to portions of a nucleic acid indicates that the nucleic acid comprises two or more subsequences that are not found in the same relationship to each other in nature. For instance, the nucleic acid is typically recombinantly produced, having two or more sequences from unrelated genes arranged to make a new functional nucleic acid, e.g., a promoter from one source and a coding region from another source. Similarly, a heterologous protein indicates that the protein comprises two or more subsequences that are not found in the same relationship to each other in nature, e.g., a fusion polypeptide comprising subsequence from different polypeptides, peptide epitopes from the same polypeptide that are not naturally in an adjacent position, or repeats of a single peptide epitope.

As used herein, the term “universal MHC class II epitope” or a “universal HTL epitope” refers to a MHC class II peptide epitope that binds to gene products of multiple MHC class II alleles. For example, the DR, DP and DQ alleles are human MHC II alleles. Generally, a unique set of peptides binds to a particular gene product of a MHC class II allele. In contrast, a universal MHC class II epitope is able to bind to gene products of multiple MHC class II alleles. A universal MHC class II epitope binds to 2 or more MHC class II alleles, generally 3 or more MHC class II alleles, and particularly 5 or more MHC class II alleles. Thus, the presence of a universal MHC class II epitope in an expression vector is advantageous in that it functions to increase the number of allelic MHC class II molecules that can bind to the peptide and, consequently, the number of Helper T lymphocytes that are activated.

Universal MHC class II epitopes are well known in the art and include, for example, epitopes such as the “pan DR epitopes,” also referred to as “PADRE” (Alexander et al., Immunity 1:751-761 (1994); WO 95/07707, U.S. Ser. No. 60/036,713, U.S. Ser. No. 60/037,432, PCT/US98/01373, 09/009,953, and U.S. Ser. No. 60/087,192 each of which is incorporated herein by reference). A “pan DR binding peptide” or a “PADRE” peptide of the invention is a peptide capable of binding at least about 7 different DR molecules, preferably 7 of the 12 most common DR molecules, most preferably 9 of the 12 most common DR molecules (DR1, 2w2b, 2w2a, 3, 4w4, 4w14, 5, 7, 52a, 52b, 52c, and 53), alternatively, 50% of a panel of DR molecules representative of greater than or equal to 75% of the human population, preferably greater than or equal to 80% of the human population. Pan DR epitopes can bind to a number of DR alleles and are strongly immunogenic for T cells. For example, pan DR epitopes were found to be more effective at inducing an immune response than natural MHC class II epitopes (Alexander, supra). An example of a PADRE epitope is the peptide AlaLysPheValAlaAlaTrpThrLeuLysAlaAlaAla (SEQ ID NO:52)

With regard to a particular amino acid sequence, an “epitope” is a set of amino acid residues which is involved in recognition by a particular immunoglobulin, or in the context of T cells, those residues necessary for recognition by T cell receptor proteins and/or Major Histocompatibility Complex (MHC) receptors. In an immune system setting, in vivo or in vitro, an epitope is the collective features of a molecule, such as primary, secondary and tertiary peptide structure, and charge, that together form a site recognized by an immunoglobulin, T cell receptor or HLA molecule. Throughout this disclosure epitope and peptide are often used interchangeably. It is to be appreciated, however, that isolated or purified protein or peptide molecules larger than and comprising an epitope of the invention are still within the bounds of the invention.

As used herein, “high affinity” with respect to HLA class I molecules is defined as binding with an IC50 (or K D ) of less than 50 nM. “Intermediate affinity” is binding with an IC50 (or K D ) of between about 50 and about 500 nM. “High affinity” with respect to binding to HLA class II molecules is defined as binding with an K D of less than 100 nM. “Intermediate affinity” is binding with a K D of between about 100 and about 1000 nM. Assays for determining binding are described in detail, e.g., in PCT publications WO 94/20127 and WO 94/03205. Alternatively, binding is expressed relative to a reference peptide. As a particular assay becomes more, or less, sensitive, the IC50s of the peptides tested may change somewhat. However, the binding relative to the reference peptide will not significantly change. For example, in an assay run under conditions such that the IC50 of the reference peptide increases 10-fold, the IC50 values of the test peptides will also shift approximately 10-fold. Therefore, to avoid ambiguities, the assessment of whether a peptide is a good, intermediate, weak, or negative binder is generally based on its IC50, relative to the IC50 of a standard peptide. Throughout this disclosure, results are expressed in terms of “IC50s.” IC50 is the concentration of peptide in a binding assay at which 50% inhibition of binding of a reference peptide is observed. Given the conditions in which the assays are run (i.e., limiting HLA proteins and labeled peptide concentrations), these values approximate KD values. It should be noted that IC50 values can change, often dramatically, if the assay conditions are varied, and depending on the particular reagents used (e.g., HLA preparation, etc.). For example, excessive concentrations of HLA molecules will increase the apparent measured IC50 of a given ligand.

The terms “identical” or percent “identity,” in the context of two or more peptide sequences, refer to two or more sequences or subsequences that are the same or have a specified percentage of amino acid residues that are the same, when compared and aligned for maximum correspondence over a comparison window, as measured using a sequence comparison algorithms using default program parameters or by manual alignment and visual inspection.

The phrases “isolated” or “biologically pure” refer to material which is substantially or essentially free from components which normally accompany the material as it is found in its native state. Thus, isolated peptides in accordance with the invention preferably do not contain materials normally associated with the peptides in their in situ environment.

“Major histocompatibility complex” or “MHC” is a cluster of genes that plays a role in control of the cellular interactions responsible for physiologic immune responses. In humans, the MHC complex is also known as the HLA complex. For a detailed description of the MHC and HLA complexes, see Paul, Fundamental Immunology (3rd ed. 1993).

“Human leukocyte antigen” or “HLA” is a human class I or class II major histocompatibility complex (MHC) protein (see, e.g., Stites, et al., Immunology, (8th ed., 1994).

An “HLA supertype or family”, as used herein, describes sets of HLA molecules grouped on the basis of shared peptide-binding specificities. HLA class I molecules that share somewhat similar binding affinity for peptides bearing certain amino acid motifs are grouped into HLA supertypes. The terms HLA superfamily, HLA supertype family, HLA family, and HLA xx-like supertype molecules (where xx denotes a particular HLA type), are synonyms.

The term “motif” refers to the pattern of residues in a peptide of defined length, usually a peptide of from about 8 to about 13 amino acids for a class I HLA motif and from about 6 to about 25 amino acids for a class II HLA motif, which is recognized by a particular HLA molecule. Peptide motifs are typically different for each protein encoded by each human HLA allele and differ in the pattern of the primary and secondary anchor residues.

A “supermotif” is a peptide binding specificity shared by HLA molecules encoded by two or more HLA alleles. Thus, a preferably is recognized with high or intermediate affinity (as defined herein) by two or more HLA antigens.

“Cross-reactive binding” indicates that a peptide is bound by more than one HLA molecule; a synonym is degenerate binding.

The term “peptide” is used interchangeably with “oligopeptide” in the present specification to designate a series of residues, typically L-amino acids, connected one to the other, typically by peptide bonds between the α-amino and carboxyl groups of adjacent amino acids. The preferred CTL-inducing oligopeptides of the invention are 13 residues or less in length and usually consist of between about 8 and about 11 residues, preferably 9 or 10 residues. The preferred HTL-inducing oligopeptides are less than about 50 residues in length and usually consist of between about 6 and about 30 residues, more usually between about 12 and 25, and often between about 15 and 20 residues.

An “immunogenic peptide” or “peptide epitope” is a peptide which comprises an allele-specific motif or supermotif such that the peptide will bind an HLA molecule and induce a CTL and/or HTL response. Thus, immunogenic peptides of the invention are capable of binding to an appropriate HLA molecule and thereafter inducing a cytotoxic T cell response, or a helper T cell response, to the antigen from which the immunogenic peptide is derived.

A “protective immune response” refers to a CTL and/or an HTL response to an antigen derived from an infectious agent or a tumor antigen, which prevents or at least partially arrests disease symptoms or progression. The immune response may also include an antibody response which has been facilitated by the stimulation of helper T cells.

The term “residue” refers to an amino acid or amino acid mimetic incorporated into an oligopeptide by an amide bond or amide bond mimetic.

“Synthetic peptide” refers to a peptide that is not naturally occurring, but is man-made using such methods as chemical synthesis or recombinant DNA technology.

The nomenclature used to describe peptide compounds follows the conventional practice wherein the amino group is presented to the left (the N-terminus) and the carboxyl group to the right (the C-terminus) of each amino acid residue. When amino acid residue positions are referred to in a peptide epitope they are numbered in an amino to carboxyl direction with position one being the position closest to the amino terminal end of the epitope, or the peptide or protein of which it may be a part. In the formulae representing selected specific embodiments of the present invention, the amino- and carboxyl-terminal groups, although not specifically shown, are in the form they would assume at physiologic pH values, unless otherwise specified. In the amino acid structure formulae, each residue is generally represented by standard three letter or single letter designations. The L-form of an amino acid residue is represented by a capital single letter or a capital first letter of a three-letter symbol, and the D-form for those amino acids having D-forms is represented by a lower case single letter or a lower case three letter symbol. Glycine has no asymmetric carbon atom and is simply referred to as “Gly” or G.

As used herein, the term “expression vector” is intended to refer to a nucleic acid molecule capable of expressing an antigen of interest such as a MHC class I or class II epitope in an appropriate target cell. An expression vector can be, for example, a plasmid or virus, including DNA or RNA viruses. The expression vector contains such a promoter element to express an antigen of interest in the appropriate cell or tissue in order to stimulate a desired immune response.

DETAILED DESCRIPTION OF THE INVENTION

Cytotoxic T lymphocytes (CTLs) and helper T lymphocytes (HTLs) are critical for immunity against infectious pathogens; such as viruses, bacteria, and protozoa; tumor cells; autoimmunne diseases and the like. The present invention provides minigenes that encode peptide epitopes which induce a CTL and/or HTL response. The minigenes of the invention also include an MHC targeting sequence. A variety of minigenes encoding different epitopes can be tested for immunogenicity using an HLA transgenic mouse. The epitopes are typically a combination of at least two or more HTL epitopes, or a CTL epitope plus a universal HTL epitope, and optinally include additional HTl and/or CTL epitopes. Two, three, four, five, six, seven, eight, nine, ten, twenty, thirty, forty or about fifty different epitopes, either HTL and/or CTL, can be included in the minigene, along with the MHC targeting sequence. The epitopes can have different HLA restriction. Epitopes to be tested include those derived from viruses such as HIV, HBV, HCV, HSV, CMV, HPV, and HTLV; cancer antigens such as p53, Her2/Neu, MAGE, PSA, human papilloma virus, and CEA; parasites such as Trypanosoma, Plasmodium, Leishmania, Giardia, Entamoeba; autoimmune diseases such as rheumatoid arthritis, myesthenia gravis, and lupus erythematosus; fungi such as Aspergillus and Candida; and bacteria such as Escherichia coli , Staphylococci, Chlamydia, Mycobacteria, Streptococci, and Pseudomonas. The epitopes to be encoded by the minigene are selected and tested using the methods described in published PCT applications WO 93/07421, WO 94/02353, WO 95/01000, WO 97/04451, and WO 97/05348, herein incorporated by reference.

HTL and CTL Epitopes

The expression vectors of the invention encode one or more MHC class II and/or class I epitopes and an MHC targeting sequence. Multiple MHC class II or class I epitopes present in an expression vector can be derived from the same antigen, or the MHC epitopes can be derived from different antigens. For example, an expression vector can contain one or more MHC epitopes that can be derived from two different antigens of the same virus or from two different antigens of different viruses. Furthermore, any MHC epitope can be used in the expression vectors of the invention. For example, any single MHC epitope or a combination of the MHC epitopes shown in Tables 1 to 8 can be used in the expression vectors of the invention. Other peptide epitopes can be selected by one of skill in the art, e.g., by using a computer to select epitopes that contain HLA allele-specific motifs or supermotifs. The expression vectors of the invention can also encode one or more universal MHC class II epitopes, e.g., PADRE (see, e.g., SEQ ID NO:52

Universal MHC class II epitopes can be advantageously combined with other MHC class I and class II epitopes to increase the number of cells that are activated in response to a given antigen and provide broader population coverage of MHC-reactive alleles. Thus, the expression vectors of the invention can encode MHC epitopes specific for an antigen, universal MHC class II epitopes, or a combination of specific MHC epitopes and at least one universal MHC class II epitope.

MHC class I epitopes are generally about 5 to 15 amino acids in length, in particular about 8 to 11 amino acids in length. MHC class II epitopes are generally about 10 to 25 amino acids in length, in particular about 13 to 21 amino acids in length. A MHC class I or II epitope can be derived from any desired antigen of interest. The antigen of interest can be a viral antigen, surface receptor, tumor antigen, oncogene, enzyme, or any pathogen, cell or molecule for which an immune response is desired. Epitopes can be selected based on their ability to bind one or multiple HLA alleles, and can also be selected using the “analog” technique described below.

Targeting Sequences

The expression vectors of the invention encode one or more MHC epitopes operably linked to a MHC targeting sequence. The use of a MHC targeting sequence enhances the immune response to an antigen, relative to delivery of antigen alone, by directing the peptide epitope to the site of MHC molecule assembly and transport to the cell surface, thereby providing an increased number of MHC molecule-peptide epitope complexes available for binding to and activation of T cells.

MHC class I targeting sequences are used in the present invention, e.g., those sequences that target an MHC class I epitope peptide to a cytosolic pathway or to the endoplasmic reticulum (see, e.g., Rammensee et al., Immunogenetics 41:178-228 (1995)). For example, the cytosolic pathway processes endogenous antigens that are expressed inside the cell. Although not wishing to be bound by any particular theory, cytosolic proteins are thought to be at least partially degraded by an endopeptidase activity of a proteasome and then transported to the endoplasmic reticulum by the TAP molecule (transporter associated with processing). In the endoplasmic reticulum, the antigen binds to MHC class I molecules. Endoplasmic reticulum signal sequences bypass the cytosolic processing pathway and directly target endogenous antigens to the endoplasmic reticulum, where proteolytic degradation into peptide fragments occurs. Such MHC class I targeting sequences are well known in the art, and include, e.g., signal sequences such as those from Ig kappa ,tissue plasminogen activator or insulin. A preferred signal peptide is the human Ig kappa chain sequence. Endoplasmic reticulum signal sequences can also be used to target MHC class II epitopes to the endoplasmic reticulum, the site of MHC class I molecule assembly.

MHC class II targeting sequences are also used in the invention, e.g., those that target a peptide to the endocytic pathway. These targeting sequences typically direct extracellular antigens to enter the endocytic pathway, which results in the antigen being transferred to the lysosomal compartment where the antigen is proteolytically cleaved into antigen peptides for binding to MHC class II molecules. As with the normal processing of exogenous antigen, a sequence that directs a MHC class II epitope to the endosomes of the endocytic pathway and/or subsequently to lysosomes, where the MHC class II epitope can bind to a MHC class II molecule, is a MHC class II targeting sequence. For example, group of MHC class II targeting sequences useful in the invention are lysosomal targeting sequences, which localize polypeptides to lysosomes. Since MHC class II molecules typically bind to antigen peptides derived from proteolytic processing of endocytosed antigens in lysosomes, a lysosomal targeting sequence can function as a MHC class II targeting sequence. Lysosomal targeting sequences are well known in the art and include sequences found in the lysosomal proteins LAMP-1 and LAMP-2 as described by August et al. (U.S. Pat. No. 5,633,234, issued May 27, 1997), which is incorporated herein by reference.

Other lysosomal proteins that contain lysosomal targeting sequences include HLA-DM. HLA-DM is an endosomal/lysosomal protein that functions in facilitating binding of antigen peptides to MHC class II molecules. Since it is located in the lysosome, HLA-DM has a lysosomal targeting sequence that can function as a MHC class II molecule targeting sequence (Copier et al., J. Immunol. 157:1017-1027 (1996), which is incorporated herein by reference).

The resident lysosomal protein HLA-DO can also function as a lysosomal targeting sequence. In contrast to the above described resident lysosomal proteins LAMP-1 and HLA-DM, which encode specific Tyr-containing motifs that target proteins to lysosomes, HLA-DO is targeted to lysosomes by association with HLA-DM (Liljedahl et al., EMBO J. 15:4817-4824 (1996)), which is incorporated herein by reference. Therefore, the sequences of HLA-DO that cause association with HLA-DM and, consequently, translocation of HLA-DO to lysosomes can be used as MHC class II targeting sequences. Similarly, the murine homolog of HLA-DO, H2-DO, can be used to derive a MHC class II targeting sequence. A MHC class II epitope can be fused to HLA-DO or H2-DO and targeted to lysosomes.

In another example, the cytoplasmic domains of B cell receptor subunits Ig-α and Ig-β mediate antigen internalization and increase the efficiency of antigen presentation (Bonnerot et al., Immunity 3:335-347 (1995)), which is incorporated herein by reference. Therefore, the cytoplasmic domains of the Ig-α and Ig-β proteins can function as MHC class II targeting sequences that target a MHC class II epitope to the endocytic pathway for processing and binding to MHC class II molecules.

Another example of a MHC class II targeting sequence that directs MHC class II epitopes to the endocytic pathway is a sequence that directs polypeptides to be secreted, where the polypeptide can enter the endosomal pathway. These MHC class II targeting sequences that direct polypeptides to be secreted mimic the normal pathway by which exogenous, extracellular antigens are processed into peptides that bind to MHC class II molecules. Any signal sequence that functions to direct a polypeptide through the endoplasmic reticulum and ultimately to be secreted can function as a MHC class II targeting sequence so long as the secreted polypeptide can enter the endosomal/lysosomal pathway and be cleaved into peptides that can bind to MHC class II molecules. An example of such a fusion is shown in FIG. 11 , where the signal sequence of kappa immunoglobulin is fused to multiple MHC class II epitopes.

In another example, the Ii protein binds to MHC class II molecules in the endoplasmic reticulum, where it functions to prevent peptides present in the endoplasmic reticulum from binding to the MHC class II molecules. Therefore, fusion of a MHC class II epitope to the Ii protein targets the MHC class II epitope to the endoplasmic reticulum and a MHC class II molecule. For example, the CLIP sequence of the Ii protein can be removed and replaced with a MHC class II epitope sequence so that the MHC class II epitope is directed to the endoplasmic reticulum, where the epitope binds to a MHC class II molecule.

In some cases, antigens themselves can serve as MHC class II or I targeting sequences and can be fused to a universal MHC class II epitope to stimulate an immune response. Although cytoplasmic viral antigens are generally processed and presented as complexes with MHC class I molecules, long-lived cytoplasmic proteins such as the influenza matrix protein can enter the MHC class II molecule processing pathway (Guéguen & Long, Proc. Natl. Acad. Sci. USA 93:14692-14697 (1996)), which is incorporated herein by reference. Therefore, long-lived cytoplasmic proteins can function as a MHC class II targeting sequence. For example, an expression vector encoding influenza matrix protein fused to a universal MHC class II epitope can be advantageously used to target influenza antigen and the universal MHC class II epitope to the MHC class II pathway for stimulating an immune response to influenza.

Other examples of antigens functioning as MHC class II targeting sequences include polypeptides that spontaneously form particles. The polypeptides are secreted from the cell that produces them and spontaneously form particles, which are taken up into an antigen-presenting cell by endocytosis such as receptor-mediated endocytosis or are engulfed by phagocytosis. The particles are proteolytically cleaved into antigen peptides after entering the endosomal/lysosomal pathway.

One such polypeptide that spontaneously forms particles is HBV surface antigen (HBV-S) (Diminsky et al., Vaccine 15:637-647 (1997); Le Borgne et al., Virology 240:304-315 (1998)), each of which is incorporated herein by reference. Another polypeptide that spontaneously forms particles is HBV core antigen (Kuhröber et al., International Immunol. 9:1203-1212 (1997)), which is incorporated herein by reference. Still another polypeptide that spontaneously forms particles is the yeast Ty protein (Weber et al., Vaccine 13:831-834 (1995)), which is incorporated herein by reference. For example, an expression vector containing HBV-S antigen fused to a universal MHC class II epitope can be advantageously used to target HBV-S antigen and the universal MHC class II epitope to the MHC class II pathway for stimulating an immune response to HBV.

Binding Affinity of Peptide Epitopes for HLA Molecules

The large degree of HLA polymorphism is an important factor to be taken into account with the epitope-based approach to vaccine development. To address this factor, epitope selection encompassing identification of peptides capable of binding at high or intermediate affinity to multiple HLA molecules is preferably utilized, most preferably these epitopes bind at high or intermediate affinity to two or more allele specific HLA molecules.

CTL-inducing peptides of interest for vaccine compositions preferably include those that have a binding affinity for class I HLA molecules of less than 500 nM. HTL-inducing peptides preferably include those that have a binding affinity for class II HLA molecules of less than 1000 nM. For example, peptide binding is assessed by testing the capacity of a candidate peptide to bind to a purified HLA molecule in vitro. Peptides exhibiting high or intermediate affinity are then considered for further analysis. Selected peptides are tested on other members of the supertype family. In preferred embodiments, peptides that exhibit cross-reactive binding are then used in vaccines or in cellular screening analyses.

Higher HLA binding affinity is typically correlated with greater immunogenicity. Greater immunogenicity can be manifested in several different ways. Immunogenicity corresponds to whether an immune response is elicited at all, and to the vigor of any particular response, as well as to the extent of a population in which a response is elicited. For example, a peptide might elicit an immune response in a diverse array of the population, yet in no instance produce a vigorous response. In accordance with these principles, close to 90% of high binding peptides have been found to be immunogenic, as contrasted with about 50% of the peptides which bind with intermediate affinity. Moreover, higher binding affinity peptides leads to more vigorous immunogenic responses. As a result, less peptide is required to elicit a similar biological effect if a high affinity binding peptide is used. Thus, in preferred embodiments of the invention, high binding epitopes are particularly useful.

The relationship between binding affinity for HLA class I molecules and immunogenicity of discrete peptide epitopes on bound antigens has been determined for the first time in the art by the present inventors. The correlation between binding affinity and immunogenicity was analyzed in two different experimental approaches (Sette el al., J. Immunol. 153:5586-5592 (1994)). In the first approach, the immunogenicity of potential epitopes ranging in HLA binding affinity over a 10,000-fold range was analyzed in HLA-A*0201 transgenic mice. In the second approach, the antigenicity of approximately 100 different hepatitis B virus (HBV)-derived potential epitopes, all carrying A*0201 binding motifs, was assessed by using PBL (peripheral blood lymphocytes) from acute hepatitis patients. Pursuant to these approaches, it was determined that an affinity threshold of approximately 500 nM (preferably 50 nM or less) determines the capacity of a peptide epitope to elicit a CTL response. These data are true for class I binding affinity measurements for naturally processed peptides and for synthesized T cell epitopes. These data also indicate the important role of determinant selection in the shaping of T cell responses (see, e.g., Schaeffer et al. Proc. Natl. Acad. Sci. USA 86:4649-4653, 1989).

An affinity threshold associated with immunogenicity in the context of HLA class II DR molecules has also been delineated (see, e.g., Southwood et al. J. Immunology 160:3363-3373 (1998), and U.S. Ser. No. 60/087192, filed May 29, 1998). In order to define a biologically significant threshold of DR binding affinity, a database of the binding affinities of 32 DR-restricted epitopes for their restricting element (i.e., the HLA molecule that binds the motif) was compiled. In approximately half of the cases (15 of 32 epitopes), DR restriction was associated with high binding affinities, i.e. binding affinities of less than 100 nM. In the other half of the cases (16 of 32), DR restriction was associated with intermediate affinity (binding affinities in the 100-1000 nM range). In only one of 32 cases was DR restriction associated with an IC50 of 1000 nM or greater. Thus, 1000 nM can be defined as an affinity threshold associated with immunogenicity in the context of DR molecules.

Peptide Epitope Binding Motifs and Supermotifs

In the past few years evidence has accumulated to demonstrate that a large fraction of HLA class I and class II molecules can be classified into a relatively few supertypes, each characterized by largely overlapping peptide binding repertoires, and consensus structures of the main peptide binding pockets.

For HLA molecule pocket analyses, the residues comprising the B and F pockets of HLA class I molecules as described in crystallographic studies were analyzed (Guo et al., Nature 360:364 (1992); Saper et al., J. Mol. Biol. 219:277 (1991); Madden et al., Cell 75:693 (1993); Parham et al., Immunol. Rev. 143:141 (1995)). In these analyses, residues 9, 45, 63, 66, 67, 70, and 99 were considered to make up the B pocket; and the B pocket was deemed to determine the specificity for the amino acid residue in the second position of peptide ligands. Similarly, residues 77, 80, 81, and 116 were considered to determine the specificity of the F pocket; the F pocket was deemed to determine the specificity for the C-terminal residue of a peptide ligand bound by the HLA class I molecule.

Through the study of single amino acid substituted antigen analogs and the sequencing of endogenously bound, naturally processed peptides, critical residues required for allele-specific binding to HLA molecules have been identified. The presence of these residues correlates with binding affinity for HLA molecules. The identification of motifs and/or supermotifs that correlate with high and intermediate affinity binding is an important issue with respect to the identification of immunogenic peptide epitopes for the inclusion in a vaccine. Kast et al. ( J. Immunol. 152:3904-3912 (1994)) have shown that motif-bearing peptides account for 90% of the epitopes that bind to allele-specific HLA class I molecules. In this study all possible peptides of 9 amino acids in length and overlapping by eight amino acids (240 peptides), which cover the entire sequence of the E6 and E7 proteins of human papillomavirus type 16, were evaluated for binding to five allele-specific HLA molecules that are expressed at high frequency among different ethnic groups. This unbiased set of peptides allowed an evaluation of the predictive value of HLA class I motifs. From the set of 240 peptides, 22 peptides were identified that bound to an allele-specific HLA molecules with high or intermediate affinity. Of these 22 peptides, 20, (i.e., 91%), were motif-bearing. Thus, this study demonstrates the value of motifs for the identification of peptide epitopes for inclusion in a vaccine: application of motif-based identification techniques eliminates screening of 90% of the potential epitopes in a target antigen protein sequence.

Peptides of the present invention may also include epitopes that bind to MHC class II DR molecules. There is a significant difference between class I and class II HLA molecules. This difference corresponds to the fact that, although a stringent size restriction and motif position relative to the binding pocket exists for peptides that bind to class I molecules, a greater degree of heterogeneity in both size and binding frame position of the motif, relative to the N and C termini of the peptide, exists for class II peptide ligands.

This increased heterogeneity of HLA class II peptide ligands is due to the structure of the binding groove of the HLA class II molecule which, unlike its class I counterpart, is open at both ends. Crystallographic analysis of HLA class II DRB*0101-peptide complexes showed that the residues occupying position I and position 6 of peptides complexed with DRB*0101 engage two complementary pockets on the DRBa*0101 molecules, with the P1 position corresponding to the most crucial anchor residue and the deepest hydrophobic pocket (see, e.g., Madden, Ann. Rev. Immunol. 13:587 (1995)). Other studies have also pointed to the P6 position as a crucial anchor residue for binding to various other DR molecules.

Thus, peptides of the present invention are identified by any one of several HLA class I or II -specific amino acid motifs (see, e.g., Tables I-III of U.S. Ser. No. 09/226,775, and 09/239,043, herein incorporated by reference in their entirety). If the presence of the motif corresponds to the ability to bind several allele-specific HLA antigens it is referred to as a supernotif. The allele-specific HLA molecules that bind to peptides that possess a particular amino acid supermotif are collectively referred to as an HLA “supertype.”

Immune Response-Stimulating Peptide Analogs

In general, CTL and HTL responses are not directed against all possible epitopes. Rather, they are restricted to a few “immunodominant” determinants (Zinkernagel et al., Adv. Immunol. 27:5159 (1979); Bennink et al., J. Exp. Med. 168:1935-1939 (1988); Rawle et al., J. Immunol. 146:3977-3984 (1991)). It has been recognized that immunodominance (Benacerraf et al., Science 175:273-279 (1972)) could be explained by either the ability of a given epitope to selectively bind a particular HLA protein (determinant selection theory) (Vitiello et al., J. Immunol. 131:1635 (1983)); Rosenthal et al., Nature 267:156-158 (1977)), or being selectively recognized by the existing TCR (T cell receptor) specificity (repertoire theory) (Klein, Immunology, The Science of Self on self Discrimination, pp. 270-310 (1982)). It has been demonstrated that additional factors, mostly linked to processing events, can also play a key role in dictating, beyond strict immunogenicity, which of the many potential determinants will be presented as immunodominant (Sercarz et al., Annu. Rev. Immunol. 11:729-766 (1993)).

The concept of dominance and subdominance is relevant to immunotherapy of both infectious diseases and cancer. For example, in the course of chronic viral disease, recruitment of subdominant epitopes can be important for successful clearance of the infection, especially if dominant CTL or HTL specificities have been inactivated by functional tolerance, suppression, mutation of viruses and other mechanisms (Franco et al., Curr. Opin. Immunol. 7:524-531 (1995)). In the case of cancer and tumor antigens, CTLs recognizing at least some of the highest binding affinity peptides might be functionally inactivated. Lower binding affinity peptides are preferentially recognized at these times, and may therefore be preferred in therapeutic or prophylactic anti-cancer vaccines.

In particular, it has been noted that a significant number of epitopes derived from known non-viral tumor associated antigens (TAA) bind HLA class I with intermediate affinity (IC50 in the 50-500 nM range). For example, it has been found that 8 of 15 known TAA peptides recognized by tumor infiltrating lymphocytes (TIL) or CTL bound in the 50-500 nM range. (These data are in contrast with estimates that 90% of known viral antigens were bound by HLA class I molecules with IC50 of 50 nM or less, while only approximately 10% bound in the 50-500 nM range (Sette et al., J. Immunol., 153:558-5592 (1994)). In the cancer setting this phenomenon is probably due to elimination, or functional inhibition of the CTL recognizing several of the highest binding peptides, presumably because of T cell tolerization events.

Without intending to be bound by theory, it is believed that because T cells to dominant epitopes may have been clonally deleted, selecting subdominant epitopes may allow extant T cells to be recruited, which will then lead to a therapeutic or prophylactic response. However, the binding of HLA molecules to subdominant epitopes is often less vigorous than to dominant ones. Accordingly, there is a need to be able to modulate the binding affinity of particular immunogenic epitopes for one or more HLA molecules, and thereby to modulate the immune response elicited by the peptide, for example to prepare analog peptides which elicit a more vigorous response. This ability would greatly enhance the usefulness of peptide-based vaccines and therapeutic agents.

Thus, although peptides with suitable cross-reactivity among all alleles of a superfamily are identified by the screening procedures described above, cross-reactivity is not always as complete as possible, and in certain cases procedures to further increase cross-reactivity of peptides can be useful; moreover, such procedures can also be used to modify other properties of the peptides such as binding affinity or peptide stability. Having established the general rules that govern cross-reactivity of peptides for HLA alleles within a given motif or supermotif, modification (i.e., analoging) of the structure of peptides of particular interest in order to achieve broader (or otherwise modified) HLA binding capacity can be performed. More specifically, peptides which exhibit the broadest cross-reactivity patterns, can be produced in accordance with the teachings herein. The present concepts related to analog generation are set forth in greater detail in co-pending U.S. Ser. No. 09/226,775.

In brief, the strategy employed utilizes the motifs or supermotifs which correlate with binding to certain HLA class I and II molecules. The motifs or supermotifs are defined by having primary anchors, and in many cases secondary anchors (see Tables I-III of U.S. Ser. No. 09/226,775). Analog peptides can be created by substituting amino acids residues at primary anchor, secondary anchor, or at primary and secondary anchor positions. Generally, analogs are made for peptides that already bear a motif or supermotif. Preferred secondary anchor residues of supermotifs and motifs that have been defined for HLA class I and class II binding peptides are shown in Tables II and III, respectively, of U.S. Ser. No. 09/226,775.

For a number of the motifs or supermotifs in accordance with the invention, residues are defined which are deleterious to binding to allele-specific HLA molecules or members of HLA supertypes that bind to the respective motif or supermotif (see Tables II and III of U.S. Ser. No. 09/226,775). Accordingly, removal of such residues that are detrimental to binding can be performed in accordance with the methods described therein. For example, in the case of the A3 supertype, when all peptides that have such deleterious residues are removed from the population of analyzed peptides, the incidence of cross-reactivity increases from 22% to 37% (I., Sidney et al., Hu. Immunol. 45:79 (1996)). Thus, one strategy to improve the cross-reactivity of peptides within a given supermotif is simply to delete one or more of the deleterious residues present within a peptide and substitute a small “neutral” residue such as Ala (that may not influence T cell recognition of the peptide). An enhanced likelihood of cross-reactivity is expected if, together with elimination of detrimental residues within a peptide, “preferred” residues associated with high affinity binding to an allele-specific HLA molecule or to multiple HLA molecules within a superfamily are inserted.

To ensure that an analog peptide, when used as a vaccine, actually elicits a CTL response to the native epitope in vivo (or, in the case of class II epitopes, a failure to elicit helper T cells that cross-react with the wild type peptides), the analog peptide may be used to immunize T cells in vitro from individuals of the appropriate HLA allele. Thereafter, the immunized cells' capacity to induce lysis of wild type peptide sensitized target cells is evaluated. In both class I and class II systems it will be desirable to use as targets, cells that have been either infected or transfected with the appropriate genes to establish whether endogenously produced antigen is also recognized by the relevant T cells.

Another embodiment of the invention is to create analogs of weak binding peptides, to thereby ensure adequate numbers of cross-reactive cellular binders. Class I peptides exhibiting binding affinities of 500-50000 nM, and carrying an acceptable but suboptimal primary anchor residue at one or both positions can be “fixed” by substituting preferred anchor residues in accordance with the respective supertype. The analog peptides can then be tested for crossbinding activity.

Another embodiment for generating effective peptide analogs involves the substitution of residues that have an adverse impact on peptide stability or solubility in, e.g., a liquid environment. This substitution may occur at any position of the peptide epitope. For example, a cysteine (C) can be substituted out in favor of gamma-amino butyric acid. Due to its chemical nature, cysteine has the propensity to form disulfide bridges and sufficiently alter the peptide structurally so as to reduce binding capacity. Substituting gamma-amino butyric acid for C not only alleviates this problem, but actually improves binding and crossbinding capability in certain instances (Sette et al, In: Persistent Viral Infections (Ahmed & Chen, eds., 1998)). Substitution of cysteine with gamma-amino butyric acid may occur at any residue of a peptide epitope, i.e., at either anchor or non-anchor positions.

Expression Vectors and Construction of a Minigene

The expression vectors of the invention contain at least one promoter element that is capable of expressing a transcription unit encoding the antigen of interest, for example, a MHC class I epitope or a MHC class II epitope and an MHC targeting sequence in the appropriate cells of an organism so that the antigen is expressed and targeted to the appropriate MHC molecule. For example, if the expression vector is administered to a mammal such as a human, a promoter element that functions in a human cell is incorporated into the expression vector. An example of an expression vector useful for expressing the MHC class II epitopes fused to MHC class II targeting sequences and the MHC class I epitopes described herein is the pEP2 vector described in Example IV.

This invention relies on routine techniques in the field of recombinant genetics. Basic texts disclosing the general methods of use in this invention include Sambrook et al., Molecular Cloning, A Laboratory Manual (2nd ed. 1989); Kriegler, Gene Transfer and Expression: A Laboratory Manual (1990); and Current Protocols in Molecular Biology (Ausubel et al., eds., 1994); Oligonucleotide Synthesis: A Practical Approach (Gait, ed., 1984); Kuijpers, Nucleic Acids Research 18(17):5197 (1994); Dueholm, J. Org. Chem. 59:5767-5773 (1994); Methods in Molecular Biology , volume (Agrawal, ed.); and Tijssen, Laboratory Techniques in Biochemistry and Molecular Biology—Hybridization with Nucleic Acid Probes , e.g., Part I, chapter 2 “Overview of principles of hybridization and the strategy of nucleic acid probe assays” (1993)).

The minigenes are comprised of two or many different epitopes (see, e.g., Tables 1-8). The nucleic acid encoding the epitopes are assembled in a minigene according to standard techniques. In general, the nucleic acid sequences encoding minigene epitopes are isolated using amplification techniques with oligonucleotide primers, or are chemically synthesized. Recombinant cloning techniques can also be used when appropriate. Oligonucleotide sequences are selected which either amplify (when using PCR to assemble the minigene) or encode (when using synthetic oligonucleotides to assemble the minigene) the desired epitopes.

Amplification techniques using primers are typically used to amplify and isolate sequences encoding the epitopes of choice from DNA or RNA (see U.S. Pat. Nos. 4,683,195 and 4,683,202; PCR Protocols: A Guide to Methods and Applications (Innis et al., eds, 1990)). Methods such as polymerase chain reaction (PCR) and ligase chain reaction (LCR) can be used to amplify epitope nucleic acid sequences directly from mRNA, from cDNA, from genomic libraries or cDNA libraries. Restriction endonuclease sites can be incorporated into the primers. Minigenes amplified by the PCR reaction can be purified from agarose gels and cloned into an appropriate vector.

Synthetic oligonucleotides can also be used to construct minigenes. This method is performed using a series of overlapping oligonucleotides, representing both the sense and non-sense strands of the gene. These DNA fragments are then annealed, ligated and cloned. Oligonucleotides that are not commercially available can be chemically synthesized according to the solid phase phosphoramidite triester method first described by Beaucage & Caruthers, Tetrahedron Letts. 22:1859-1862 (1981), using an automated synthesizer, as described in Van Devanter et. al., Nucleic Acids Res. 12:6159-6168 (1984). Purification of oligonucleotides is by either native acrylamide gel electrophoresis or by anion-exchange HPLC as described in Pearson & Reanier, J. Chrom. 255:137-149 (1983).

The epitopes of the minigene are typically subcloned into an expression vector that contains a strong promoter to direct transcription, as well as other regulatory sequences such as enhancers and polyadenylation sites. Suitable promoters are well known in the art and described, e.g., in Sambrook et al. and Ausubel et al. Eukaryotic expression systems for mammalian cells are well known in the art and are commercially available. Such promoter elements include, for example, cytomegalovirus (CMV), Rous sarcoma virus LTR and SV40.

The expression vector typically contains a transcription unit or expression cassette that contains all the additional elements required for the expression of the minigene in host cells. A typical expression cassette thus contains a promoter operably linked to the minigene and signals required for efficient polyadenylation of the transcript. Additional elements of the cassette may include enhancers and introns with functional splice donor and acceptor sites.

In addition to a promoter sequence, the expression cassette can also contain a transcription termination region downstream of the structural gene to provide for efficient termination. The termination region may be obtained from the same gene as the promoter sequence or may be obtained from different genes.

The particular expression vector used to transport the genetic information into the cell is not particularly critical. Any of the conventional vectors used for expression in eukaryotic cells may be used. Expression vectors containing regulatory elements from eukaryotic viruses are typically used in eukaryotic expression vectors, e.g., SV40 vectors, papilloma virus vectors, and vectors derived from Epstein Bar virus. Other exemplary eukaryotic vectors include pMSG, pAV009/A+, pMTO10/A+, pMAMneo-5, baculovirus pDSVE, and any other vector allowing expression of proteins under the direction of the SV40 early promoter, SV40 later promoter, metallothionein promoter, murine mammary tumor virus promoter, Rous sarcoma virus promoter, polyhedrin promoter, or other promoters shown effective for expression in eukaryotic cells. In one embodiment, the vector pEP2 is used in the present invention.

Other elements that are typically included in expression vectors also include a replicon that functions in E. coli, a gene encoding antibiotic resistance to permit selection of bacteria that harbor recombinant plasmids, and unique restriction sites in nonessential regions of the plasmid to allow insertion of eukaryotic sequences. The particular antibiotic resistance gene chosen is not critical, any of the many resistance genes known in the art are suitable. The prokaryotic sequences are preferably chosen such that they do not interfere with the replication of the DNA in eukaryotic cells, if necessary.

Administration In Vivo

The invention also provides methods for stimulating an immune response by administering an expression vector of the invention to an individual. Administration of an expression vector of the invention for stimulating an immune response is advantageous because the expression vectors of the invention target MHC epitopes to MHC molecules, thus increasing the number of CTL and HTL activated by the antigens encoded by the expression vector.

Initially, the expression vectors of the invention are screened in mouse to determine the expression vectors having optimal activity in stimulating a desired immune response. Initial studies are therefore carried out, where possible, with mouse genes of the MHC targeting sequences. Methods of determining the activity of the expression vectors of the invention are well known in the art and include, for example, the uptake of 3 H-thymidine to measure T cell activation and the release of 51 Cr to measure CTL activity as described below in Examples II and III. Experiments similar to those described in Example IV are performed to determine the expression vectors having activity at stimulating an immune response. The expression vectors having activity are further tested in human. To circumvent potential adverse immunological responses to encoded mouse sequences, the expression vectors having activity are modified so that the MHC class II targeting sequences are derived from human genes. For example, substitution of the analogous regions of the human homologs of genes containing various MHC class II targeting sequences are substituted into the expression vectors of the invention. Examples of such human homologs of genes containing MHC class II targeting sequences are shown in FIGS. 12 to 17 . Expression vectors containing human MHC class II targeting sequences, such as those described in Example I below, are tested for activity at stimulating an immune response in human.

The invention also relates to pharmaceutical compositions comprising a pharmaceutically acceptable carrier and an expression vector of the invention. Pharmaceutically acceptable carriers are well known in the art and include aqueous or non-aqueous solutions, suspensions and emulsions, including physiologically buffered saline, alcohol/aqueous solutions or other solvents or vehicles such as glycols, glycerol, oils such as olive oil or injectable organic esters.

A pharmaceutically acceptable carrier can contain physiologically acceptable compounds that act, for example, to stabilize the expression vector or increase the absorption of the expression vector. Such physiologically acceptable compounds include, for example, carbohydrates, such as glucose, sucrose or dextrans, antioxidants such as ascorbic acid or glutathione, chelating agents, low molecular weight polypeptides, antimicrobial agents, inert gases or other stabilizers or excipients. Expression vectors can additionally be complexed with other components such as peptides, polypeptides and carbohydrates. Expression vectors can also be complexed to particles or beads that can be administered to an individual, for example, using a vaccine gun. One skilled in the art would know that the choice of a pharmaceutically acceptable carrier, including a physiologically acceptable compound, depends, for example, on the route of administration of the expression vector.

The invention further relates to methods of administering a pharmaceutical composition comprising an expression vector of the invention to stimulate an immune response. The expression vectors are administered by methods well known in the art as described in Donnelly et al. ( Ann. Rev. Immunol. 15:617-648 (1997)); Felgner et al. (U.S. Pat. No. 5,580,859, issued Dec. 3, 1996); Felgner (U.S. Pat. No. 5,703,055, issued Dec. 30, 1997); and Carson et al. U.S. Pat. No. 5,679,647, issued Oct. 21, 1997), each of which is incorporated herein by reference. In one embodiment, the minigene is administered as naked nucleic acid.

A pharmaceutical composition comprising an expression vector of the invention can be administered to stimulate an immune response in a subject by various routes including, for example, orally, intravaginally, rectally, or parenterally, such as intravenously, intramuscularly, subcutaneously, intraorbitally, intracapsularly, intraperitoneally, intracisternally or by passive or facilitated absorption through the skin using, for example, a skin patch or transdermal iontophoresis, respectively. Furthermore, the composition can be administered by injection, intubation or topically, the latter of which can be passive, for example, by direct application of an ointment or powder, or active, for example, using a nasal spray or inhalant. An expression vector also can be administered as a topical spray, in which case one component of the composition is an appropriate propellant. The pharmaceutical composition also can be incorporated, if desired, into liposomes, microspheres or other polymer matrices (Felgner et al., U.S. Pat. No. 5,703,055; Gregoriadis, Liposome Technology , Vols. I to III (2nd ed. 1993), each of which is incorporated herein by reference). Liposomes, for example, which consist of phospholipids or other lipids, are nontoxic, physiologically acceptable and metabolizable carriers that are relatively simple to make and administer.

The expression vectors of the invention can be delivered to the interstitial spaces of tissues of an animal body (Feigner et al., U.S. Pat. Nos. 5,580,859 and 5,703,055). Administration of expression vectors of the invention to muscle is a particularly effective method of administration, including intradermal and subcutaneous injections and transdermal administration. Transdermal administration, such as by iontophoresis, is also an effective method to deliver expression vectors of the invention to muscle. Epidermal administration of expression vectors of the invention can also be employed. Epidermal administration involves mechanically or chemically irritating the outermost layer of epidermis to stimulate an immune response to the irritant (Carson et al., U.S. Pat. No. 5,679,647).

Other effective methods of administering an expression vector of the invention to stimulate an immune response include mucosal administration (Carson et al., U.S. Pat. No. 5,679,647). For mucosal administration, the most effective method of administration includes intranasal administration of an appropriate aerosol containing the expression vector and a pharmaceutical composition. Suppositories and topical preparations are also effective for delivery of expression vectors to mucosal tissues of genital, vaginal and ocular sites. Additionally, expression vectors can be complexed to particles and administered by a vaccine gun.

The dosage to be administered is dependent on the method of administration and will generally be between about 0.1 μg up to about 200 μg. For example, the dosage can be from about 0.05 μg/kg to about 50 mg/kg, in particular about 0.005-5 mg/kg. An effective dose can be determined, for example, by measuring the immune response after administration of an expression vector. For example, the production of antibodies specific for the MHC class II epitopes or MHC class I epitopes encoded by the expression vector can be measured by methods well known in the art, including ELISA or other immunological assays. In addition, the activation of T helper cells or a CTL response can be measured by methods well known in the art including, for example, the uptake of 3 H-thymidine to measure T cell activation and the release of 51 Cr to measure CTL activity (see Examples II and III below).

The pharmaceutical compositions comprising an expression vector of the invention can be administered to mammals, particularly humans, for prophylactic or therapeutic purposes. Examples of diseases that can be treated or prevented using the expression vectors of the invention include infection with HBV, HCV, HIV and CMV as well as prostate cancer, renal carcinoma, cervical carcinoma, lymphoma, condyloma acuminatum and acquired immunodeficiency syndrome (AIDS).

In therapeutic applications, the expression vectors of the invention are administered to an individual already suffering from cancer, autoimmune disease or infected with a virus. Those in the incubation phase or acute phase of the disease can be treated with expression vectors of the invention, including those expressing all universal MHC class II epitopes, separately or in conjunction with other treatments, as appropriate.

In therapeutic and prophylactic applications, pharmaceutical compositions comprising expression vectors of the invention are administered to a patient in an amount sufficient to elicit an effective immune response to an antigen and to ameliorate the signs or symptoms of a disease. The amount of expression vector to administer that is sufficient to ameliorate the signs or symptoms of a disease is termed a therapeutically effective dose. The amount of expression vector sufficient to achieve a therapeutically effective dose will depend on the pharmaceutical composition comprising an expression vector of the invention, the manner of administration, the state and severity of the disease being treated, the weight and general state of health of the patient and the judgment of the prescribing physician.

All publications and patent applications cited in this specification are herein incorporated by reference as if each individual publication or patent application were specifically and individually indicated to be incorporated by reference.

Although the foregoing invention has been described in some detail by way of illustration and example for purposes of clarity of understanding, it will be readily apparent to one of ordinary skill in the art in light of the teachings of this invention that certain changes and modifications may be made thereto without departing from the spirit or scope of the appended claims.

EXAMPLES

The following example is provided by way of illustration only and not by way of limitation. Those of skill in the art will readily recognize a variety of noncritical parameters that could be changed or modified to yield essentially similar results.

Example 1

Construction of Expression Vectors Containing MHC Class II Epitopes

This example shows construction of expression vectors containing MHC class II epitopes that can be used to target antigens to MHC class II molecules.

Expression vectors comprising DNA constructs were prepared using overlapping oligonucleotides, polymerase chain reaction (PCR) and standard molecular biology techniques (Dieffenbach & Dveksler, PCR Primer: A Laboratory Manual (1995); Sambrook et al., Molecular Cloning: A Laboratory Manual (2nd ed., 1989), each of which is incorporated herein by reference).

To generate full length wild type Ii, the full length invariant chain was amplified, cloned, and sequenced and used in the construction of the three invariant chain constructs. Except where noted, the source of cDNA for all the constructs listed below was Mouse Spleen Marathon-Ready cDNA made from Balb/c males (Clontech; Palo Alto Calif.). The primer pairs were the oligonucleotide GCTAGCGCCGCCACCATGGATGACCAACGCGACCTC (SEQ ID NO:40), which is designated murIi-F and contains an NheI site followed by the consensus Kozak sequence and the 5′ end of the Ii cDNA; and the oligonucleotide GGTACCTCACAGGGTGACTTGACCCAG (SEQ ID NO:41), which is designated murIi-R and contains a KpnI site and the 3′ end of the Ii coding sequence.

For the PCR reaction, 5 μl of spleen cDNA and 250 nM of each primer were combined in a 100 μl reaction with 0.25 mM each dNTP and 2.5 units of Pfu polymerase in Pfu polymerase buffer containing 10 mM KCl, 10 mM NM 4 ) 2 SO 4 , 20 mM Tris-chloride, pH 8.75, 2 MM MgSO 4 , 0.1% TRITON X-100 and 100 μg/ml bovine serum albumin (BSA). A Perkin/Elmer 9600 PCR machine (Perkin Elmer; Foster City Calif.) was used and the cycling conditions were: 1 cycle of 95° C. for 5 minutes, followed by 30 cycles of 95° C. for 15 seconds, 52° C. for 30 seconds, and 72° C. for 1 minute. The PCR reaction was run on a 1% agarose gel, and the 670 base pair product was cut out, purified by spinning through a Millipore Ultrafree-MC filter (Millipore; Bedford Mass.) and cloned into pCR-Blunt from Invitrogen (San Diego, Calif.). Individual clones were screened by sequencing, and a correct clone (named bIi#3) was used as a template for the helper constructs.

DNA constructs containing pan DR epitope sequences and MHC II targeting sequences derived from the Ii protein were prepared. The Ii murine protein has been previously described (Zhu & Jones, Nucleic Acids Res. 17:447-448 (1989)), which is incorporated herein by reference. Briefly, the IiPADRE construct contains the full length Ii sequence with PADRE precisely replacing the CLIP region. The DNA construct encodes amino acids 1 through 87 of invariant chain, followed with the 13 amino acid PADRE sequence (SEQ ID NO.52) and the rest of the invariant chain DNA sequence (amino acids 101-215). The construct was amplified in 2 overlapping halves that were joined to produce the final construct. The two primers used to amplify the 5′ half were murIi-F and the oligonucleotide CAGGGTCCAGGCAGCCACGAACTTGGCCACAGGTTTGGCAGA (SEQ ID NO:42), which is designated IiPADRE-R. The IiPADRE-R primer includes nucleotides 303-262 of IiPADRE. The 3′ half was amplified with the primer GGCTGCCTGGACCCTGAAGGCTGCCGCTATGTCCATGGATAAC (SEQ ID NO:43), which is designated IiPADRE-F and includes nucleotides 288-330 of IiPADRE; and murIi-R. The PCR conditions were the same as described above, and the two halves were isolated by agarose gel electrophoresis as described above.

Ten microliters of each PCR product was combined in a 100 μl PCR reaction with an annealing temperature of 50° C. for five cycles to generate a full length template. Primers murIi-F and murIi-R were added and 25 more cycles carried out. The full length IiPADRE product was isolated, cloned, and sequenced as described above. This construct contains the murine Ii gene with a pan DR epitope sequence substituted for the CLIP sequence of Ii (FIG. 1 ).

A DNA construct, designated I80T, containing the cytoplasmic domain, the transmembrane domain and part of the luminal domain of Ii fused to a string of multiple MHC class II epitopes was constructed (FIG. 2 ). Briefly, the string of multiple MHC class II epitopes was constructed with three overlapping oligonucleotides (oligos). Each oligo overlapped its neighbor by 15 nucleotides and the final MHC class II epitope string was assembled by extending the overlapping oligonucleotides in three sets of reactions using PCR. The three oligonucleotides were: oligo 1, nucleotides 241-310, CTTCGCATGAAGCTTATCAGCCAGGCTGTGCACGCCGCTCACGCCGAAATCAA CGAAGCTGGAAGAACCC (SEQ ID NO:44);

oligo 2, nucleotides 364-295, TTCTGGTCAGCAGAAAGAACAGGATAGGAGCGTTTGGAGGGCGATAAGCTGG AGGGGTTCTTCCAGCTTC (SEQ ID NO:45); and

oligo 3, nucleotides 350-42, TTCTGCTGACCAGAATCCTGACAATCCCCCAGTCCCTGGACGCCAAGTTCGTG GCTGCCTGGACCCTGAAG (SEQ ID NO:46).

For the first PCR reaction, 5 μg of oligos 1 and 2 were combined in a 100 μl reaction containing Pfu polymerase. A Perkin/Elmer 9600 PCR machine was used and the annealing temperature used was 45° C. The PCR product was gel-purified, and a second reaction containing the PCR product of oligos 1 and 2 with oligo 3 was annealed and extended for 10 cycles before gel purification of the full length product to be used as a “mega-primer.”

The I80T construct was made by amplifying bIi#3 with murIi-F and the mega-primer. The cycling conditions were: 1 cycle of 95° C. for 5 minutes, followed by 5 cycles of 95° C. for 15 seconds, 37° C. for 30 seconds, and 72° C. for 1 minute. Primer Help-epR was added and an additional 25 cycles were carried out with the annealing temperature raised to 47° C. The Help-epR primer GGTACCTCAAGCGGCAGCCTTCAGGGTCCAGGCA (SEQ ID NO:47) corresponds to nucleotides 438-405. The full length I80T product was isolated, cloned, and sequenced as above.

The I80T construct ( FIG. 2 ) encodes amino acid residues 1 through 80 of Ii, containing the cytoplasmic domain, the transmembrane domain and part of the luminal domain, fused to a string of multiple MHC class II epitopes corresponding to: amino acid residues 323-339 of ovalbumin (IleSerGlnAlaValHisAlaAlaHisAlaGluIleAsnGluAlaGlyArg; SEQ ID NO:48); amino acid residues 128 to 141 of HBV core antigen (amino acids ThrProProAlaTyrArgProProAsnAlaProIleLeu; SEQ ID NO:49); amino acid residues 182 to 196 of HBV env (amino acids PhePheLeuLeuThrArglleLeuThrIleProGlnSerLeuAsp; SEQ ID NO:50); and the pan DR sequence designated SEQ ID NO:52)

A DNA construct containing the cytoplasmic domain, transmembrane domain and a portion of the luminal domain of Ii fused to the MHC class II epitope string shown in FIG. 2 and amino acid residues 101 to 215 of Ii encoding the trimerization region of Ii was generated (FIG. 3 ). This construct, designated IiThfull, encodes the first 80 amino acids of invariant chain followed by the MHC class II epitope string (replacing CLIP) and the rest of the invariant chain (amino acids 101-215). Briefly, the construct was generated as two overlapping halves that were annealed and extended by PCR to yield the final product.

The 5′ end of IiThfull was made by amplifying I80T with murIi-F (SEQ ID NO:40) and Th-Pad-R. The Th-Pad-R primer AGCGGCAGCCTTCAGGGTC (SEQ ID NO:51) corresponds to nucleotides 429-411. The 3′ half was made by amplifying bIi#3 with IiPADRE-F and murIi-R (SEQ ID NO:41). The IiPADRE-F primer GGCTGCCTGGACCCTGAAGGCTGCCGCTATGTCCATGGATAAC (SEQ ID NO:43) corresponds to nucleotides 402-444. Each PCR product was gel purified and mixed, then denatured, annealed, and extended by five cycles of PCR. Primers murIi-F (SEQ ID NO:40) and murIi-R (SEQ ID NO:41) were added and another 25 cycles performed. The full length product was gel purified, cloned, and sequenced.

All of the remaining constructs described below were made essentially according to the scheme shown in FIG. 18 . Briefly, primer pairs 1F plus 1R, designated below for each specific construct, were used to amplify the specific signal sequence and contained an overlapping 15 base pair tail identical to the 5′ end of the MHC class II epitope string. Primer pair Th-ova-F, ATCAGCCAGGCTGTGCACGC (SEQ ID NO:53), plus Th-Pad-R (SEQ ID NO:51) were used to amplify the MHC class II epitope string. A 15 base pair overlap and the specific transmembrane and cytoplasmic tail containing the targeting signals were amplified with primer pairs 2F plus 2R.

All three pieces of each cDNA were amplified using the following conditions: 1 cycle of 95° C. for 5 minutes, followed by 30 cycles of 95° C. for 15 seconds, 52° C. for 30 seconds, and 72° C. for 1 minute. Each of the three fragments was agrose-gel purified, and the signal sequence and MHC class II string fragments were combined and joined by five cycles in a second PCR. After five cycles, primers 1F and Th-Pad-R were added for 25 additional cycles and the PCR product was gel purified. This signal sequence plus MHC class II epitope string fragment was combined with the transmembrane plus cytoplasmic tail fragment for the final PCR. After five cycles, primers 1F plus 2R were added for 25 additional cycles and the product was gel purified, cloned and sequenced.

A DNA construct containing the murine immunoglobulin kappa signal sequence fused to the T helper epitope string shown in FIG. 2 and the transmembrane and cytoplasmic domains of LAMP-1 was generated ( FIG. 4 ) (Granger et al., J. Biol. Chem. 265:12036-12043 (1990)), which is incorporated by reference (mouse LAMP-1 GenBank accession No. M32015). This construct, designated kappaLAMP-Th, contains the consensus mouse immunoglobulin kappa signal sequence and was amplified from a plasmid containing full length immunoglobulin kappa as depicted in FIG. 18 . The primer 1F used was the oligonucleotide designated KappaSig-F, GCTAGCGCCGCCACCATGGGAATGCAG (SEQ ID NO:54).

The primer 1R used was the oligonucleotide designated Kappa-Th-R, CACAGCCTGGCTGATTCCTCTGGACCC (SEQ ID NO:55).

The primer 2F used was the oligonucleotide designated PAD/LAMP-F, CTGAAGGCTGCCGCTAACAACATGTTGATCCCC (SEQ ID NO:56). The primer 2R used was the oligonucleotide designated LAMP-CYTOR, GGTACCCTAGATGGTCTGATAGCC (SEQ ID NO:57).

A DNA construct containing the signal sequence of H2-M fused to the MHC class II epitope string shown in FIG. 2 and the transmembrane and cytoplasmic domains of H2-M was generated (FIG. 5 ). The mouse H2-M gene has been described previously, Peleraux et al., Immunogenetics 43:204-214 (1996)), which is incorporated herein by reference. This construct was designated H2M-Th and was constructed as depicted in FIG. 18 . The primer 1F used was the oligonucleotide designated H2-Mb-1F, GCC GCT AGC GCC GCC ACC ATG GCT GCA CTC TGG (SEQ ID NO:58). The primer 1R used was the oligonucleotide designated H2-Mb-1R, CAC AGC CTG GCT GAT CCC CAT ACA GTG CAG (SEQ ID NO:59). The primer 2F used was the oligonucleotide designated H2-Mb-2F, CTG AAG GCT GCC GCT AAG GTC TCT GTG TCT (SEQ ID NO:60). The primer 2R used was the oligonucleotide designated H2-Mb-2R, GCG GGTACC CTAATG CCG TCC TTC (SEQ ID NO:61).

A DNA construct containing the signal sequence of H2-DO fused to the MHC class II epitope string shown in FIG. 2 and the transmembrane and cytoplasmic domains of H2-DO was generated (FIG. 6 ). The mouse H2-DO gene has been described previously (Larhammar et al., J. Biol. Chem. 260:14111-14119 (1985)), which is incorporated herein by reference (GenBank accession No. M19423). This construct, designated HBO-Th, was constructed as depicted in FIG. 18 . The primer 1F used was the oligonucleotide designated H2-Ob-1F, GCG GCT AGC GCC GCC ACC ATG GGC GCT GGG AGG (SEQ ID NO:62). The primer 1R used was the oligonucleotide designated H2-Ob-1R, TGC ACA GCC TGG CTG ATG GAA TCC AGC CTC (SEQ ID NO:63). The primer 2F used was the oligonucleotide designated H2-Ob-2F, CTG AAG GCT GCC GCT ATA CTG AGT GGA GCT (SEQ ID NO:64). The primer 2R used was the oligonucleotide designated H2-Ob-2R, GCC GGT ACC TCA TGT GAC ATG TCC CG (SEQ ID NO:65).

A DNA construct containing a pan DR epitope sequence (SEQ ID NO:52) fused to the amino-terminus of influenza matrix protein is generated (FIG. 7 ). This construct, designated PADRE-Influenza matrix, contains the universal MHC class II epitope PADRE attached to the amino terminus of the influenza matrix coding sequence. The construct is made using a long primer on the 5′ end primer. The 5′ primer is the oligonucleotide GCTAGCGCCGCCACCATGGCCAAGTTCGTGGCTGCCTGGACCCTGAAGGCTGC CGCTATGAGTCTTCTAACCGAGGTCGA (SEQ ID NO:66). The 3′ primer is the oligonucleotide TCACTTGAATCGCTGCATCTGCACCCCCAT (SEQ ID NO:67). Influenza virus from the America Type Tissue Collection (ATCC) is used as a source for the matrix coding region (Perdue et al. Science 279:393-396 (1998)), which is incorporated herein by reference (GenBank accession No. AF036358).

A DNA construct containing a pan DR epitope sequence (SEQ ID NO:52.) fused to the amino-terminus of HBV-S antigen was generated (FIG. 8 ). This construct is designated PADRE-HBV-s and was generated by annealing two overlapping oligonucleotides to add PADRE onto the amino terminus of hepatitis B surface antigen (Michel et al., Proc. Natl. Acad. Sci. USA 81:7708-7712 (1984); Michel et al., Proc. Natl. Acad. Sci. USA 92:5307-5311 (1995)), each of which is incorporated herein by reference. One oligonucleotide was GCTAGCGCCGCCACCATGGCCAAGTTCGTGGCTGCCTGGACCCTGAAGGCTGC CGCTC (SEQ ID NO:68). The second oligonucleotide was CTCGAGAGCGGCAGCCTTCAGGGTCCAGGCAGCCACGAACTTGGCCATGGTG GCGGCG (SEQ ID NO:69). When annealed, the oligos have NheI and XhoI cohesive ends. The oligos were heated to 100° C. and slowly cooled to room temperature to anneal. A three part ligation joined PADRE with an XhoI-KpnI fragment containing HBV-s antigen into the NheI plus KpnI sites of the expression vector.

A DNA construct containing the signal sequence of Ig-α fused to the MHC class II epitope string shown in FIG. 2 and the transmembrane and cytoplasmic domains of Ig-α was generated (FIG. 9 ). The mouse Ig-α gene has been described previously (Kashiwamura et al., J. Immunol. 145:337-343 (1990)), which is incorporated herein by reference (GenBank accession No. M31773). This construct, designated Ig-alphaTh, was constructed as depicted in FIG. 18 . The primer 1F used was the oligonucleotide designated Ig alpha-1F, GCG GCT AGC GCC GCC ACC ATG CCA GGG GGT CTA (SEQ ID NO:70). The primer 1R used was the oligonucleotide designated Igalpha-1R, GCA CAG CCT ATG TGA TCG CCT GGC ATC CGG (SEQ ID NO:71). The primer 2F used was the oligonucleotide designated Igalpha-2F, CTG AAG GCT GCC GCT GGG ATC ATC TTG CTG (SEQ ID NO:72). The primer 2R used was the oligonucleotide designated Igalpha-2R, GCG GGT ACC TCA TGG CTT TTC CAG CTG (SEQ ID NO:73).

A DNA construct containing the signal sequence of Ig-β fused to the MHC class II string shown in FIG. 2 and the transmembrane and cytoplasmic domains of Igβ was generated (FIG. 10 ). The Ig-β sequence is the B29 gene of mouse and has been described previously (Hermanson et al., Proc. Natl. Acad. Sci. USA 85:6890-6894 (1988)), which is incorporated herein by reference (GenBank accession No. J03857). This construct, designated Ig-betaTh, was constructed as depicted in FIG. 18 . The primer 1F used was the oligonucleotide designated B29-1F (33mer) GCG GCT AGC GCC GCC ACC ATG GCC ACA CTG GTG (SEQ ID NO:74). The primer 1R used was the oligonucleotide designated B29-1R (30mer) CAC AGC CTG GCT GAT CGG CTC ACC TGA GAA (SEQ ID NO:75). The primer 2F used was the oligonucleotide designated B292F (30mer) CTG AAG GCT GCC GCT ATT ATC TTG ATC CAG (SEQ ID NO:76). The primer 2R used was the oligonucleotide designated B29-2R (27mer), GCC GGT ACC TCA TTC CTG GCC TGG ATG (SEQ ID NO:77).

A DNA construct containing the signal sequence of the kappa immunoglobulin signal sequence fused to the MHC class II epitope string shown in FIG. 2 was constructed (FIG. 11 ). This construct is designated SigTh and was generated by using the kappaLAMP-Th construct (shown in FIG. 4 ) and amplifying with the primer pair KappaSig-F (SEQ ID NO:54) plus Help-epR (SEQ ID NO:47) to create SigTh. SigTh contains the kappa immunoglobulin signal sequence fused to the T helper epitope string and terminated with a translational stop codon.

Constructs encoding human sequences corresponding to the above described constructs having mouse sequences are prepared by substituting human sequences for the mouse sequences. Briefly, for the IiPADRE construct, corresponding to FIG. 1 , amino acid residues 1-80 from the human Ii gene HLA-DR sequence ( FIG. 12 ) (GenBank accession No. X00497 M14765) is substituted for the mouse Ii sequences, which is fused to PADRE, followed by human invariant chain HLA-DR amino acid residues 114-223. For the I80T construct, corresponding to FIG. 2 , amino acid residues 1-80 from the human sequence of Ii is followed by a MHC class II epitope string. For the IiThfull construct, corresponding to FIG. 3 , amino acid residues 1-80 from the human sequence of Ii, which is fused to a MHC class II epitope string, is followed by human invariant chain amino acid residues 114-223.

For the LAMP-Th construct, similar to FIG. 4 , the signal sequence encoded by amino acid residues 11∝19 (nucleotides 11-67) of human LAMP-1( FIG. 13 ) (GenBank accession No. J04182), which is fused to the MHC class II epitope string, is followed by the transmembrane (nucleotides 1163-1213) and cytoplasmic tail (nucleotides 1214-1258) region encoded by amino acid residues 380-416 of human LAMP-1.

For the HLA-DM-Th construct, corresponding to FIG. 5 , the signal sequence encoded by amino acid residues 1-17 (nucleotides 1-51) of human HLA-DMB ( FIG. 14 ) (GenBank accession No. U15085), which is fused to the MHC class II epitope string, is followed by the transmembrane (nucleotides 646-720) and cytoplasmic tail (nucleotides 721-792) region encoded by amino acid residues 216-263 of human HLA-DMB.

For the HLA-DO-Th construct, corresponding to FIG. 6 , the signal sequence encoded by amino acid residues 1-21 (nucleotides 1-63) of human HLA-DO ( FIG. 15 ) (GenBank accession No. L29472 J02736 N00052), which is fused to the MHC class II epitope string, is followed by the transmembrane (nucleotides 685-735) and cytoplasmic tail (nucleotides 736-819) region encoded by amino acid residues 223-273 of human HLA-DO.

For the Ig-alphaTh construct, corresponding to FIG. 9 , the signal sequence encoded by amino acid residues 1-29 (nucleotides 1-87) of human Ig-α MB-1 ( FIG. 16 ) (GenBank accession No. U05259), which is fused to the MHC class II epitope string, is followed by the transmembrane (nucleotides 424-498) and cytoplasmic tail (nucleotides 499-678) region encoded by amino acid residues 142-226 of human Ig-α MB-1.

For the Ig-betaTh construct, corresponding to FIG. 10 , the signal sequence encoded by amino acid residues 1-28 (nucleotides 17-100) of human Ig-β 29 ( FIG. 17 ) (GenBank accession No. M80461), which is fused to the MHC class II epitope string, is followed by the transmembrane (nucleotides 500-547) and cytoplasmic tail (nucleotides 548-703) region encoded by amino acid residues 156-229 of human Ig-β.

The SigTh construct shown in FIG. 11 can be used in mouse and human. Alternatively, a signal sequence derived from an appropriate human gene containing a signal sequence can be substituted for the mouse kappa immunoglobulin sequence in the Sig Th construct.

The PADRE-Influenza matrix construct shown in FIG. 7 and the PADRE-HBVs construct shown in FIG. 8 can be used in mouse and human.

Some of the DNA constructs described above were cloned into the vector pEP2 ( FIG. 19 ; SEQ ID NO:35). The pEP2 vector was constructed to contain dual CMV promoters. The pEP2 vector used the backbone of pcDNA3.1(−)Myc-His A from Invitrogen and pIRES1hyg from Clontech. Changes were made to both vectors before the CMV transcription unit from pIRES 1 hyg was moved into the modified pcDNA vector.

The pcDNA3.1(−)Myc-His A vector (http://www.invitrogen.com) was modified. Briefly, the PvuII fragment (nucleotides 1342-3508) was deleted. A BspHI fragment that contains the Ampicillin resistance gene (nucleotides 4404-5412) was cut out. The Ampicillin resistance gene was replaced with the kanamycin resistance gene from pUC4K (GenBank Accession #X06404). pUC4K was amplified with the primer set: TCTGATGTTACATTGCACAAG (SEQ ID NO:78) (nucleotides 1621-1601) and GCGCACTCATGATGCTCTGCCAGTGTTACAACC (SEQ ID NO:79) (nucleotides 682-702 plus the addition of a BspHI restriction site on the 5′ end). The PCR product was digested with BspHI and ligated into the vector digested with BspHI. The region between the PmeI site at nucleotide 905 and the EcoRV site at nucleotide 947 was deleted. The vector was then digested with PmeI (cuts at nucleotide 1076) and ApaI (cuts at nucleotide 1004), Klenow filled in at the cohesive ends and ligated. The KpnI site at nucleotide 994 was deleted by digesting with KpnI and filling in the ends with Klenow DNA polymerase, and ligating. The intron A sequence from CMV (GenBank accession M21295, nucleotides 635-1461) was added by amplifying CMV DNA with the primer set: GCGTCTAGAGTAAGTACCGCCTATAGACTC (SEQ ID NO:80) (nucleotides 635-655 plus an XbaI site on the 5′ end) and CCGGCTAGCCTGCAGAAAAGACCCATGGAA (SEQ ID NO:81) (nucleotides 1461-1441 plus an NheI site on the 3′ end). The PCR product was digested with XbaI and NheI and ligated into the NheI site of the vector (nucleotide 895 of the original pcDNA vector) so that the NheI site was on the 3′ end of the intron.

To modify the pIRES1hyg vector (GenBank Accession U89672, Clontech), the KpnI site (nucleotide 911) was deleted by cutting and filling in with Klenow. The plasmid was cut with NotI (nucleotide 1254) and XbaI (nucleotide 3196) and a polylinker oligo was inserted into the site. The polylinker was formed by annealing the following two oligos:

GGCCGCAAGGAAAAAATCTAGAGTCGGCCATAGACTAATGCCGGTACCG (SEQ ID NO:82) and

CTAGCGGTACCGGCATTAGTCTATGGCCCGACTCTAGATTTTTTCCTTGC (SEQ ID NO:83). The resulting plasmid was cut with HincII and the fragment between HincII sites 234 and 3538 was isolated and ligated into the modified pcDNA vector. This fragment contains a CMV promoter, intron, polylinker, and polyadenylation signal.

The pIREShyg piece and the pcDNA piece were combined to form pEP2. The modified pcDNA3.1 (−)Myc-His A vector was partially digested with PvuII to isolate a linear fragment with the cut downstream of the pcDNA polyadenylation signal (the other PvuII site is the CMV intron). The HincII fragment from the modified pIRES1hyg vector was ligated into the PvuII cut vector. The polyadenylation signal from the pcDNA derived transcription unit was deleted by digesting with EcoRI (pcDNA nucleotide 955) and Xhol (pIRES1hyg nucleotide 3472) and replaced with a synthetic polyadenylation sequence. The synthetic polyadenylation signal was described in Levitt et al., Genes and Development 3:1019-1025 (1989)).

Two oligos were annealed to produce a fragment that contained a polylinker and polyadenylation signal with EcoRI and XhoI cohesive ends. The oligos were:

AATTCGGATATCCAAGCTTGATGAATAAAAGATCAGAGCTCTAGTGATCTGTGT GTTGGTTTTTTTGTGTGC (SEQ ID NO:84) and

TCGAGCACACAAAAAACCAACACACAGATCACTAGAGCTCTGATCTTTTTATT CATCAAGCTTGGATATCCG (SEQ ID NO:85).

The resulting vector is named pEP2 and contains two separate transcription units. Both transcription units use the same CMV promoter but each contains different intron, polylinker, and polyadenylation sequences.

The pEP2 vector contains two transcription units. The first transcription unit contains the CMV promoter initially from pcDNA (nucleotides 210-862 in FIG. 19 ), CMV intron A sequence (nucleotides 900-1728 in FIG. 19 ), polylinker cloning site (nucleotides 1740-1760 in FIG. 19 ) and synthetic polyadenylation signal (nucleotides 1764-1769 in FIG. 19 ). The second transcription unit, which was initially derived from pIRES I hyg, contains the CMV promoter (nucleotides 3165-2493 in FIG. 19 ), intron sequence (nucleotides 2464-2173 in FIG. 19 ), polylinker clone site (nucleotides 2126-2095 in FIG. 19 ) and bovine growth hormone polyadenylation signal (nucleotides 1979-1974 in FIG. 19 ). The kanamycin resistance gene is encoded in nucleotides 4965-4061 (FIG. 19 ).

The DNA constructs described above were digested with NheI and KpnI and cloned into the XbaI and KpnI sites of pEP2 (the second transcription unit).

Additional vectors were also constructed. To test for the effect of co-expression of MHC class I epitopes with MHC class II epitopes, an insert was generated, designated AOS, that contains nine MHC class I epitopes. The AOS insert was initially constructed in the vector pMIN.0 ( FIG. 20 ; SEQ ID NO:36). Briefly, the AOS insert contains nine MHC class I epitopes, six restricted by HLA-A2 and three restricted by HLA-A11, and the universal MHC class II epitope PADRE. The vector pMIN.0 contains epitopes from HBV, HIV and a mouse ovalbumin epitope. The MHC class I epitopes appear in pMIN.0 in the following order:

consensus mouse Ig Kappa signal sequence (pMIN.0 amino acid residues 1-20, nucleotides 16-81) MQVQIQSLFLLLLWVPGSRG (SEQ ID NO:86) encoded by nucleotides ATG CAG GTG CAG ATC CAG AGC CTG TTT CTG CTC CTC CTG TGG GTG CCC GGG TCC AGA GGA (SEQ ID NO:87);

HBV pol 149-159 (A11 restricted)

(pMIN.0 amino acid residues 21-31, nucleotides 82-114) HTLWKAGILYK (SEQ ID NO:88) encoded by nucleotides CAC ACC CTG TGG AAG GCC GGAATC CTG TAT AAG (SEQ ID NO:89);

PADRE-universal MHC class II epitope (pMIN.0 amino acid residues 32-45, nucleotides 115-153) AKFVAAWTLKAAA (SEQ ID NO:52) encoded by nucleotides GCC AAG TTC GTG GCT GCC TGG ACC CTG AAG GCT GCC GCT (SEQ ID NO:90);

HBV core 18-27 (A2 restricted) (pMIN.0 amino acid residues 46-55, nucleotides 154-183) FLPSDFFPSV (SEQ ID NO:91) encoded by nucleotides TTC CTG CCT AGC GAT TTC TTT CCT AGC GTG (SEQ ID NO:92);

HIV env 120-128 (A2 restricted) (pMIN.0 amino acid residues 56-64, nucleotides 184-210) KLTPLCVTL (SEQ ID NO:93) encoded by nucleotides AAG CTG ACC CCA CTG TGC GTG ACC CTG (SEQ ID NO:94);

HBV pol 551-559 (A2 restricted) (pMIN.0 amino acid residues 65-73, nucleotides 211-237) YMDDVVLGA (SEQ ID NO:95) encoded by nucleotides TAT ATG GAT GAC GTG GTG CTG GGA GCC (SEQ ID NO:96);

mouse ovalbumin 257-264 (K b restricted) (pMIN.0 amino acid residues 74-81, nucleotides 238-261) SIINFEKL (SEQ ID NO:97) encoded by nucleotides AGC ATC ATC AAC TTC GAG AAG CTG (SEQ ID NO:98);

HBV pol 455-463 (A2 restricted) (pMIN.0 amino acid residues 82-90, nucleotides 262-288) GLSRYVARL (SEQ ID NO:99) encoded by nucleotides GGA CTG TCC AGA TAC GTG GCT AGG CTG (SEQ ID NO:100);

HIV pol 476-84 (A2 restricted) (pMIN.0 amino acid residues 91-99, nucleotides 289-315) ILKEPVHGV (SEQ ID NO:101) encoded by nucleotides ATC CTG AAG GAG CCT GTG CAC GGC GTG (SEQ ID NO:102);

HBV core 141-151 (All restricted)

(pMIN.0 amino acid residues 100-110, nucleotides 316-348) STLPETTVVRR (SEQ ID NO:103) encoded by nucleotides TCC ACC CTG CCA GAG ACC ACC GTG GTG AGG AGA (SEQ ID NO:104);

HIV env 49-58 (All restricted) (pMIN.0 amino acid residues 111-120, nucleotides 349-378) TVYYGVPVWK (SEQ ID NO:105) encoded by nucleotides ACC GTG TAC TAT GGA GTG CCT GTG TGG AAG (SEQ ID NO:106); and

HBV env 335-343 (A2 restricted) (pMIN.0 amino acid residues 121-129, nucleotides 378-405) WLSLLVPFV (SEQ ID NO:107) encoded by nucleotides TGG CTG AGC CTG CTG GTG CCC TTT GTG (SEQ ID NO:108).

The pMIN.0 vector contains a KpnI restriction site (pMIN.0 nucleotides 406-411) and a NheI restriction site (pMIN.0 nucleotides 1-6). The pMIN.0 vector contains a consensus Kozak sequence (nucleotides 7-18) (GCCGCCACCATG; SEQ ID NO:109) and murine Kappa Ig-light chain signal sequence followed by a string of 10 MHC class I epitopes and one universal MHC class II epitope. The pMIN.0 sequence encodes an open reading frame fused to the Myc and His antibody epitope tag coded for by the pcDNA 3.1 Myc-His vector. The pMIN.0 vector was constructed with eight oligonucleotides:

Min1 oligo

GAGGAGCAGAAACAGGCTCTGGATCTGCACCTGCATTCCCATGGTGGCGGCGC TAGCAAGCTTCTTGCGC (SEQ ID NO:110);

Min2 oligo

CCTGTTTCTGCTCCTCCTGTGGGTGCCCGGGTCCAGAGGACACACCCTGTGGA AGGCCGGAATCCTGTATA (SEQ ID NO:11);

Min3 oligo

TCGCTAGGCAGGAAAGCGGCAGCCTTCAGGGTCCAGGCAGCCACGAACTTGG CCTTATACAGGATTCCGG (SEQ ID NO:112);

Min4 oligo

CTTTCCTGCCTAGCGATTTCTTTCCTAGCGTGAAGCTGACCCCACTGTGCGTGA CCCTGTATATGGATGAC (SEQ ID NO:113);

Min5 oligo

CGTACCTGGACAGTCCCAGCTTCTCGAAGTTGATGATGCTGGCT CCCAGCACCACGTCATCCATATACAG (SEQ ID NO:114);

Min6 oligo

GGACTGTCCAGATACGTGGCTAGGCTGATCCTGAAGGAGCCTGTGCACGGCGT GTCCACCCTGCCAGAGAC (SEQ ID NO:115);

Min7 oligo

GCTCAGCCACTTCCACACAGGCACTCCATAGTACACGGTCCTCCTCACCACGG TGGTCTCTGGCAGGGTG (SEQ ID NO:116);

Min8 oligo

GTGGAAGTGGCTGAGCCTGCTGGTGCCCTTTGTGGGTACCTGATCTAGAGC (SEQ ID NO:117).

Additional primers were flanking primer 5′, GCG CAA GAA GCT TGC TAG CG (SEQ ID NO:118) and flanking primer 3′, GCT CTA GAT CAG GTA CCC CAC (SEQ ID NO:119).

The original pMIN.0 minigene construction was carried out using eight overlapping oligos averaging approximately 70 nucleotides in length, which were synthesized and HPLC purified by Operon Technologies Inc. Each oligo overlapped its neighbor by 15 nucleotides, and the final multi-epitope minigene was assembled by extending the overlapping oligos in three sets of reactions using PCR (Ho et al., Gene 77:51-59 (1989).

For the first PCR reaction, 5 μg of each of two oligos were annealed and extended: 1+2, 3+4, 5+6, and 7+8 were combined in 100 μl reactions containing 0.25 mM each dNTP and 2.5 units of Pfu polymerase in Pfu polymerase buffer containing 10 mM KCl, 10 mM (NH 4 ) 2 SO 4 , 20 mM Tris-chloride, pH 8.75, 2 mM MgSO 4 , 0.1% TRITON X-100 and 100 mg/ml BSA. A Perkin/Elmer 9600 PCR machine was used and the annealing temperature used was 5° C. below the lowest calculated T m of each primer pair. The full length dimer products were gel-purified, and two reactions containing the product of 1-2 and 3-4, and the product of 5-6 and 7-8 were mixed, annealed and extended for 10 cycles. Half of the two reactions were then mixed, and 5 cycles of annealing and extension carried out before flanking primers were added to amplify the full length product for 25 additional cycles. The full length product was gel purified and cloned into pCR-blunt (Invitrogen) and individual clones were screened by sequencing. The Min insert was isolated as an NheI-KpnI fragment and cloned into the same sites of pcDNA3.1(−)/Myc-His A (Invitrogen) for expression. The Min protein contains the Myc and His antibody epitope tags at its carboxyl-terminal end.

For all the PCR reactions described, a total of 30 cycles were performed using Pfu polymerase and the following conditions: 95° C. for 15 seconds, annealing temperature for 30 seconds, 72° C. for one minute. The annealing temperature used was 5° C. below the lowest calculated Tm of each primer pair.

Three changes to pMIN.0 were made to produce pMIN.1 ( FIG. 21 ; SEQ ID NO:37, also referred to as pMIN-AOS). The mouse ova epitope was removed, the position 9 alanine anchor residue (#547) of HBV pol 551-560 was converted to a valine which increased the in vitro binding affinity 40-fold, and a translational stop codon was introduced at the end of the multi-epitope coding sequence. The changes were made by amplifying two overlapping fragments and combining them to yield the full length product.

The first reaction used the 5′ pcDNA vector primer T7 and the primer Min-ovaR (nucleotides 247-218) TGGACAGTCCCACTCCCAGCACCACGTCAT (SEQ ID NO:120). The 3′ half was amplified with the primers: Min-ovaF (nucleotides 228-257) GCTGGGAGTGGGACTGTCCAGGTACGTGGC (SEQ ID NO:121) and Min-StopR (nucleotides 390-361) GGTACCTCACACAAAGGGCACCAGCAGGC (SEQ ID NO:122)

The two fragments were gel purified, mixed, denatured, annealed, and filled in with five cycles of PCR. The full length fragment was amplified with the flanking primers T7 and Min-Stop for 25 more cycles. The product was gel purified, digested with NheI and KpnI and cloned into pcDNA3.1 for sequencing and expression. The insert from pMin.1 was isolated as an NheI-KpnI fragment and cloned into pEP2 to make pEP2-AOS.

Example II

Assay for T Helper Cell Activation

This example shows methods for assaying T helper cell activity. One method for assaying T helper cell activity uses spleen cells of an immunized organism. Briefly, a spleen cell pellet is suspended with 2-3 ml of red blood cell lysis buffer containing 8.3 g/liter ammonium chloride in 0.001 M Tris-HCl, pH 7.5. The cells are incubated in lysis buffer for 3-5 min at room temperature with occasional vortexing. An excess volume of 50 ml of R10 medium is added to the cells, and the cells are pelleted. The cells are resuspended and pelleted one or two more times in R2 medium or R10 medium.

The cell pellet is suspended in R10 medium and counted. If the cell suspension is aggregated, the aggregates are removed by filtration or by allowing the aggregates to settle by gravity. The cell concentration is brought to 10 7 /ml, and 100 μl of spleen cells are added to 96 well flat bottom plates.

Dilutions of the appropriate peptide, such as pan DR epitope (SEQ ID NO:145), are prepared in R10 medium at 100, 10, 1, 0.1 and 0.01 μg/ml, and 100 μl of peptide are added to duplicate or triplicate wells of spleen cells. The final peptide concentration is 50, 5, 0.5, 0.05 and 0.005 μg/ml. Control wells receive 100 μl R10 medium.

The plates are incubated for 3 days at 37° C. After 3 days, 20 μl of 50 μCi/ml 3 H-thymidine is added per well. Cells are incubated for 18-24 hours and then harvested onto glass fiber filters. The incorporation of 3 H-thymidine into DNA of proliferating cells is measured in a beta counter.

A second assay for T helper cell activity uses peripheral blood mononuclear cells (PBMC) that are stimulated in vitro as described in Alexander et al., supra and Sette (WO 95/07,707), as adapted from Manca et al., J. Immunol. 146:1964-1971 (1991), which is incorporated herein by reference. Briefly, PBMC are collected from healthy donors and purified over Ficoll-Plaque (Pharmacia Biotech; Piscataway, N.J.). PBMC are plated in a 24 well tissue culture plate at 4×10 6 cells/ml. Peptides are added at a final concentration of 10 μg/ml. Cultures are incubated at 37° C. in 5% CO 2 .

On day 4, recombinant interleukin-2 (IL-2) is added at a final concentration of 10 ng/ml. Cultures are fed every 3 days by aspirating 1 ml of medium and replacing with fresh medium containing IL-2. Two additional stimulations of the T cells with antigen are performed on approximately days 14 and 28. The T cells (3× 10 5 /well) are stimulated with peptide (10 μg/ml) using autologous PBMC cells (2×10 6 irradiated cells/well) (irradiated with 7500 rads) as antigen-presenting cells in a total of three wells of a 24 well tissue culture plate. In addition, on day 14 and 28, T cell proliferative responses are determined under the following conditions: 2×10 4 T cells/well; 1×10 5 irradiated PBMC/well as antigen-presenting cells; peptide concentration varying between 0.01 and 10 μg/ml final concentration. The proliferation of the T cells is measured 3 days later by the addition of 3 H-thymidine (1 μCi/well) 18 hr prior to harvesting the cells. Cells are harvested onto glass filters and 3 H-thymidine incorporation is measured in a beta plate counter. These results demonstrate methods for assaying T helper cell activity by measuring 3 H-thymidine incorporation.

Example III

Assay for Cytotoxic T Lymphocyte Response

This example shows a method for assaying cytotoxic T lymphocyte (CTL) activity. A CTL response is measured essentially as described previously (Vitiello et al., Eur. J. Immunol. 27:671-678 (1997), which is incorporated herein by reference). Briefly, after approximately 10-35 days following DNA immunization, splenocytes from an animal are isolated and co-cultured at 37° C. with syngeneic, irradiated (3000 rad) peptide-coated LPS blasts (1×10 6 to 1.5×10 6 cells/ml) in 10 ml R10 in T25 flasks. LPS blasts are obtained by activating splenocytes (1×10 6 to 1.5×10 6 cells/ml) with 25 μg/ml lipopolysaccharides (LPS) (Sigma cat. no. L-2387; St. Louis, Mo.) and 7 μg/ml dextran sulfate (Pharmacia Biotech) in 30 ml R10 medium in T75 flasks for 3 days at 37° C. The lymphoblasts are then resuspended at a concentration of 2.5×10 7 to 3.0×10 7 /ml, irradiated (3000 rad), and coated with the appropriate peptides (100 μg/ml) for 1 h at 37° C. Cells are washed once, resuspended in R10 medium at the desired concentration and added to the responder cell preparation. Cultures are assayed for cytolytic activity on day 7 in a 51 Cr-release assay.

For the 51 Cr-release assay, target cells are labeled for 90 min at 37° C. with 150 μsodium 51 chromate ( 51 Cr) (New England Nuclear; Wilmington Del.), washed three times and resuspended at the appropriate concentration in R10 medium. For the assay, 10 4 target cells are incubated in the presence of different concentrations of effector cells in a final volume of 200 μl in U-bottom 96 well plates in the presence or absence of 10 μg/ml peptide. Supernatants are removed after 6 h at 37° C., and the percent specific lysis is determined by the formula: percent specific lysis=100×(experimental release−spontaneous release)/(maximum release−spontaneous release). To facilitate comparison of responses from different experiments, the percent release data is transformed to lytic units 30 per 10 6 cells (LU30/10 6 ), with 1 LU30 defined as the number of effector cells required to induce 30% lysis of 10 4 target cells in a 6 h assay. LU values represent the LU30/10 6 obtained in the presence of peptide minus LU30/10 6 in the absence of peptide. These results demonstrate methods for assaying CTL activity by measuring 51 Cr release from cells.

Example IV

T Cell Proliferation in Mice Immunized with Expression Vectors Encoding MHC Class II Epitopes and MHC Class II Targeting Sequences

This example demonstrates that expression vectors encoding MHC class II epitopes and MHC class II targeting sequences are effective at activating T cells.

The constructs used in the T cell proliferation assay are described in Example I and were cloned into the vector pEP2, a CMV driven expression vector. The peptides used for T cell in vitro stimulation are: Ova 323-339, ISQAVHAAHAEINEAGR (SEQ ID NO:48); HBVcore128, TPPAYRPPNAPILF (SEQ ID NO:124); HBVenv182, FFLLTRILTIPQSLD (SEQ ID NO:-50); and PADRE, AKFVAAWTLKAAA (SEQ ID NO:52).

T cell proliferation was assayed essentially as described in Example II. Briefly, 12 to 16 week old B6D2 F1 mice (2 mice per construct) were injected with 100 μg of the indicated expression vector (50 μg per leg) in the anterior tibialis muscle. After eleven days, spleens were collected from the mice and separated into a single cell suspension by Dounce homogenization. The splenocytes were counted and one million splenocytes were plated per well in a 96-well plate. Each sample was done in triplicate. Ten μg/ml of the corresponding peptide encoded by the respective expression vectors was added to each well. One well contained splenocytes without peptide added for a negative control. Cells were cultured at 37° C., 5% CO 2 for three days.

After three days, one μCi of 3 H-thymidine was added to each well. After 18 hours at 37° C., the cells were harvested onto glass filters and 3 H incorporation was measured on an LKB β plate counter. The results of the T cell proliferation assay are shown in Table 9. Antigenspecific T cell proliferation is presented as the stimulation index (SI); this is defined as the ratio of the average 3 H-thymidine incorporation in the presence of antigen divided by the 3 H-thymidine incorporation in the absence of antigen.

The immunogen “PADRE+IFA” is a positive control where the PADRE peptide in incomplete Freund's adjuvant was injected into the mice and compared to the response seen by injecting the MHC class II epitope constructs containing a PADRE sequence. As shown in Table 9, most of the expression vectors tested were effective at activating T cell proliferation in response to the addition of PADRE peptide. The activity of several of the expression vectors was comparable to that seen with immunization with the PADRE peptide in incomplete Freund's adjuvant. The expression vectors containing both MHC class I and MHC class II epitopes, pEP2-AOS and pcDNA-AOS, were also effective at activating T cell proliferation in response to the addition of PADRE peptide.

These results show that expression vectors encoding MHC class II epitopes fused to a MHC class II targeting sequence is effective at activating T cell proliferation and are useful for stimulating an immune response.

Example V

In vivo Assay Using Transgenic Mice

A. Materials and Methods

Peptides were synthesized according to standard F-moc solid phase synthesis methods which have been previously described (Ruppert et al., Cell 74:929 (1993); Sette et al., Mol. Immunol. 31:813 (1994)). Peptide purity was determined by analytical reverse-phase HPLC and purity was routinely>95%. Synthesis and purification of the Theradigm-HBV lipopeptide vaccine is described in (Vitiello et al., J. Clin. Invest. 95:341 (1995)).

Mice

HLA-A2.1 transgenic mice used in this study were the F1 generation derived by crossing transgenic mice expressing a chimeric gene consisting of the α1, α2 domains of HLA-A2.1 and α3 domain of H-2K b with SJL/J mice (Jackson Laboratory, Bar Harbor, Me.). This strain will be referred to hereafter as HLA-A2.1/K b -H-2 bxs . The parental HLA-A2.1/K b transgenic strain was generated on a C57BL/6 background using the transgene and methods described in (Vitiello et al., J. Exp. Med. 173:1007 (1991)). HLA-A11/K b transgenic mice used in the current study were identical to those described in (Alexander et al., J. Immunol. 159:4753 (1997)).

Cell lines. MHC Purification, and Peptide Binding Assay

Target cells for peptide-specific cytotoxicity assays were Jurkat cells transfected with the HLA-A2.1/K b chimeric gene (Vitiello et al., J. Exp. Med. 173:1007 (1991)) and .221 tumor cells transfected with HLA-A11/K b (Alexander et al., J. Immunol. 159:4753 (1997)).

To measure presentation of endogenously processed epitopes, Jurkat-A2.1/K b cells were transfected with the pMin.1 or pMin.2-GFP minigenes then tested in a cytotoxicity assay against epitope-specific CTL lines. For transfection, Jurkat-A2.1/K b cells were resuspended at 10 7 cells/ml and 30 μg of DNA was added to 600 μl of cell suspension. After electroporating cells in a 0.4 cm cuvette at 0.25 kV, 960 μFd, cells were incubated on ice for 10 min then cultured for 2 d in RPMI culture medium. Cells were then cultured in medium containing 200 U/ml hygromycin B (Calbiochem, San Diego Calif.) to select for stable transfectants. FACS was used to enrich the fraction of green fluorescent protein (GFP)-expressing cells from 15% to 60% (data not shown).

Methods for measuring the quantitative binding of peptides to purified HLA-A2.1 and -A11 molecules is described in Ruppert et al., Cell 74:929 (1993); Sette et al., Mol. Immunol. 31:813 (1994); Alexander et al., J. Immunol. 159:4753 (1997).

All tumor cell lines and splenic CTLs from primed mice were grown in culture medium (CM) that consisted of RPMI 1640 medium with Hepes (Life Technologies, Grand Island, N.Y.) supplemented with 10% FBS, 4 mM L-glutamine, 5×10 −5 M 2-ME, 0.5 mM sodium pyruvate, 100 μg/ml streptomycin, and 100 U/ml penicillin.

Construction of Minigene Multi-epitope DNA Plasmids

pMIN.0 and pMIN.1 (i.e., pMIN-AOS) were constructed as described above and in U.S. Ser. No. 60/085,751.

pMin.1-No PADRE and pMin.1-Anchor. pMin.1 was amplified using two overlapping fragments which was then combined to yield the full length product. The first reaction used the 5′ pcDNA vector primer T7 and either primer ATCGCTAGGCAGGAACTTATACAGGATTCC (SEQ ID NO:126) for pMin. 1-No PADRE or TGGACAGTCCGGCTCCCAGCACCACGT (SEQ ID NO:127) for pMin. 1-Anchor. The 3′ half was amplified with the primers TTCCTGCCTAGCGATTTC (SEQ ID NO:128) (No PADRE) or GCTGGGAGCCGGACTGTCCAGGTACGT (SEQ ID NO:129) (Anchor) and Min-StopR. The two fragments generated from amplifying the 5′ and 3′ ends were gel purified, mixed, denatured, annealed, and filled in with five cycles of PCR. The full length fragment was further amplified with the flanking primers T7 and Min-StopR for 25 more cycles.

pMin.1-No Sig. The Ig signal sequence was deleted from pMin.1 by PCR amplification with primer GCTAGCGCCGCCACCATGCACACCCTGTGGAAGGC CGGAATC (SEQ ID NO:130) and pcDNA rev (Invitrogen) primers. The product was cloned into pCR-blunt and sequenced.

pMin.1-Switch. Three overlapping fragments were amplified from pMin.1, combined, and extended. The 5′ fragment was amplified with the vector primer T7 and primer GGGCACCAGCAGGCTCAGCCACACTCCCAGCACCACGTC (SEQ ID NO:131). The second overlapping fragment was amplified with primers AGCCTGCTGGTGCCCTTTGTGATCCTGAAGGAGCCTGTGC (SEQ ID NO:132) and AGCCACGTACCTGGACAGTCCCTTCCACACAGGCACTCCAT (SEQ ID NO:133). Primer TGTCCAGGTACGTGGCTAGGCTGTGAGGTACC (SEQ ID NO:134) and the vector primer pcDNA rev (Invitrogen) were used to amplify the third (3′) fragment. Fragments 1, 2, and 3 were amplified and gel purified. Fragments 2 and 3 were mixed, annealed, amplified, and gel purified. Fragment 1 was combined with the product of 2 and 3, and extended, gel purified and cloned into pcDNA3.1 for expression.

pMin.2-GFP. The signal sequence was deleted from pMin.0 by PCR amplification with Min.0-No Sig-5′ GCTAGCGCCGCCACCATGCACACCCTGTGGAAGGCCGGAATC (SEQ ID NO:135) plus pcDNA rev (Invitrogen) primers. The product was cloned into pCR-blunt and sequenced. The insert containing the open reading frame of the signal sequence-deleted multi-epitope construct was cut out with NheI plus HindIII and ligated into the same sites of pEGFPN1 (Clontech). This construct fuses the coding region of the signal-deleted pMin.0 construct to the N-terminus of green fluorescent protein (GFP).

Immunization of Mice

For DNA immunization, mice were pretreated by injecting 50 μl of 10 μM cardiotoxin (Sigma Chem. Co., #C9759) bilaterally into the tibialis anterior muscle. Four or five days later, 100 μg of DNA diluted in PBS were injected in the same muscle.

Theradigm-HBV lipopeptide (10 mg/ml in DMSO) that was stored at−20° C., was thawed for 10 min at 45° C. before being diluted 1:10 (v/v) with room temperature PBS. Immediately upon addition of PBS, the lipopeptide suspension was vortexed vigorously and 100 μl was injected s.c. at the tail base (100 μg/mouse).

Immunogenicity of individual CTL epitopes was tested by mixing each CTL epitope (50 μg/mouse) with the HBV core 128-140 peptide (TPPAYRPPNAPIL (SEQ ID NO:49), 140 μg/mouse) which served to induce I-A b -restricted Th cells. The peptide cocktail was then emuslifed in incomplete Freund's adjuvant (Sigma Chem. Co.) and 100 μl of peptide emulsion was injected s.c. at the tail base.

In vitro CTL Cultures and Cytotoxicity Assays

Eleven to 14 days after immunization, animals were sacrificed and a single cell suspension of splenocytes prepared. Splenocytes from cDNA-primed animals were stimulated in vitro with each of the peptide epitopes represented in the minigene. Splenocytes (2.5-3.0×10 7 /flask) were cultured in upright 25 cm 2 flasks in the presence of 10 μg/ml peptide and 100 irradiated spleen cells that had been activated for 3 days with LPS (25 μg/ml) and dextran sulfate (7 μg/ml). Triplicate cultures were stimulated with each epitope. Five days later, cultures were fed with fresh CM. After 10 d of in vitro culture, 2-4×10 6 CTLs from each flask were restimulated with 10 7 LPS/dextran sulfate-activated splenocytes treated with 100 μg/ml peptide for 60-75 min at 37° C., then irradiated 3500 rads. CTLs were restimulated in 6-well plates in 8 ml of cytokine-free CM. Eighteen hr later, cultures received cytokines contained in con A-activated splenocyte supernatant (10-15% final concentration, v/v) and were fed or expanded on the third day with CM containing 10-15% cytokine supernate. Five days after restimulation, CTL activity of each culture was measured by incubating varying numbers of CTLs with 10 4 51 ° C.r-labelled target cells in the presence or absence of peptide. To decrease nonspecific cytotoxicity from NK cells, YAC-1 cells (ATCC) were also added at a YAC-1: 51 Cr-labeled target cell ratio of 20:1. CTL activity against the HBV Pol 551 epitope was measured by stimulating DNA-primed splenocytes in vitro with the native A-containing peptide and testing for cytotoxic activity against the same peptide.

To more readily compare responses, the standard E:T ratio vs % cytotoxicity data curves were converted into LU per 10 6 effector cells with one LU defined as the lytic activity required to achieve 30% lysis of target cells at a 100:1 E:T ratio. Specific CTL activity (ΔLU) was calculated by subtracting the LU value obtained in the absence of peptide from the LU value obtained with peptide. A given culture was scored positive for CTL induction if all of the following criteria were met: 1) ΔLU>2;2) LU(+peptide)÷LU(−peptide)>3; and 3) a>10% difference in % cytotoxicity tested with and without peptide at the two highest E:T ratios (starting E:T ratios were routinely between 25-50:1).

CTL lines were generated from pMin.1-primed splenocytes through repeated weekly stimulations of CTLs with peptide-treated LPS/DxS-activated splenocytes using the 6-well culture conditions described above with the exception that CTLs were expanded in cytokine-containing CM as necessary during the seven day stimulation period.

Cytokine Assay

To measure IFN-γ production in response to minigene-transfected target cells, 4×10 4 CTLs were cultured with an equivalent number of minigene-transfected Jurkat-A2.1/K b cells in 96-well flat bottom plates. After overnight incubation at 37° C., culture supernatant from each well was collected and assayed for IFN-γ concentration using a sandwich ELISA. Immulon II microtiter wells (Dynatech, Boston, Mass.) were coated overnight at 4° C. with 0.2 μg of anti-mouse IFN-γ capture Ab, R4-6A2 (Pharmingen). After washing wells with PBS/0.1% Tween-20 and blocking with 1% BSA, Ab-coated wells were incubated with culture supernate samples for 2 hr at room temperature. A secondary anti-IFN-γ Ab, XMG1.2 (Pharmingen), was added to wells and allowed to incubate for 2 hr at room temperature. Wells were then developed by incubations with Avidin-DH and finally with biotinylated horseradish peroxidase H (Vectastain ABC kit, Vector Labs, Burlingame, Calif.) and TMB peroxidase substrate (Kirkegaard and Perry Labs, Gaithersberg, Md.). The amount of cytokine present in each sample was calculated using a rIFN-γ standard (Pharmingen).

b. Results

Selection of Epitopes and Minigene Construct Design

In the first series of experiments, the issue was whether a balanced multispecific CTL response could be induced by simple minigene cDNA constructs that encode several dominant HLA class I-restricted epitopes. Accordingly, nine CTL epitopes were chosen on the basis of their relevance in CTL immunity during HBV and HIV infection in humans, their sequence conservancy among viral subtypes, and their class I MHC binding affinity (Table 10). Of these nine epitopes, six are restricted by HLA-A2.1 and three showed HLA-Al 11-restriction. One epitope, HBV Pol 551, was studied in two alternative forms: either the wild type sequence or an analog (HBV Pol 551-V) engineered for higher binding affinity.

As referenced in Table 10, several independent laboratories have reported that these epitopes are part of the dominant CTL response during HBV or HIV infection. All of the epitopes considered showed greater than 75% conservancy in primary amino acid sequence among the different HBV subtypes and HIV clades. The MHC binding affinity of the peptides was also considered in selection of the epitopes. These experiment addressed the feasibility of immunizing with epitopes possessing a wide range of affinities and, as shown in Table 10, the six HBV and three HIV HLA-restricted epitopes covered a spectrum of MHC binding affinities spanning over two orders of magnitude, with IC 50 % concentrations ranging from 3 nM to 200 nM.

The immunogenicity of the six A2.1- and three A11-restricted CTL epitopes in transgenic mice was verified by co-immunization with a helper T cell peptide in an IFA formulation. All of the epitopes induced significant CTL responses in the 5 to 73 ΔLU range (Table 10). As mentioned above, to improve the MHC binding and immunogenicity of HBV Pol 551, the C-terminal A residue of this epitope was substituted with V resulting in a dramatic 40-fold increase in binding affinity to HLA-A2.1 (Table 10). While the parental sequence was weakly or nonimmunogenic in HLA transgenic mice, the HBV Pol 551-V analog induced significant levels of CTL activity when administered in IFA (Table 10). On the basis of these results, the V analog of the HBV Pol 551 epitope was selected for the initial minigene construct. In all of the experiments reported herein, CTL responses were measured with target cells coated with the native HBV Pol 551 epitope, irrespective of whether the V analog or native epitope was utilized for immunization.

Finally, since previous studies indicated that induction of T cell help significantly improved the magnitude and duration of CTL responses (Vitiello et al., J. Clin. Invest. 95.341 (1995); Livingston et al., J. Immunol. 159:1383 (1997)), the universal Th cell epitope PADRE was also incorporated into the minigene. PADRE has been shown previously to have high MHC binding affinity to a wide range of mouse and human MHC class II haplotypes (Alexander et al., Immunity 1:751 (1994)). In particular, it has been previously shown that PADRE is highly immunogenic in H-2 b mice that are used in the current study (Alexander et al., Immunity 1:751 (1994)).

pMin. 1, the prototype cDNA minigene construct encoding nine CTL epitopes and PADRE, was synthesized and subcloned into the pcDNA3.1 vector. The position of each of the nine epitopes in the minigene was optimized to avoid junctional mouse H-2 b and HLA-A2.1 class I MHC epitopes. The mouse Ig K signal sequence was also included at the 5′ end of the construct to facilitate processing of the CTL epitopes in the endoplasmic reticulum (ER) as reported by others (Anderson et al., J. Exp. Med. 174:489 (1991)). To avoid further conformational structure in the translated polypeptide gene product that may affect processing of the CTL epitopes, an ATG stop codon was introduced at the 3′ end of the minigene construct upstream of the coding region for c-myc and poly-his epitopes in the pcDNA3.1 vector.

Immunopenicity of pMin.1 in Transgenic Mice

To assess the capacity of the pMin.1 minigene construct to induce CTLs in vivo, HLA-A2.1/K b -H-2 bxs transgenic mice were immunized intramuscularly with 100 μg of naked cDNA. As a means of comparing the level of CTLs induced by cDNA immunization, a control group of animals was also immunized with Theradigm-HBV, a palmitolyated lipopeptide consisting of the HBV Core 18 CTL epitope linked to the tetanus toxin 830-843 Th cell epitope.

Splenocytes from immunized animals were stimulated twice with each of the peptide epitopes encoded in the minigene, then assayed for peptide-specific cytotoxic activity in a 51 Cr release assay. A representative panel of CTL responses of pMin.1-primed splenocytes, shown in FIG. 22 , clearly indicates that significant levels of CTL induction were generated by minigene immunization. The majority of the cultures stimulated with the different epitopes exceeded 50% specific lysis of target cells at an E:T ratio of 1:1. The results of four independent experiments, compiled in Table 11, indicate that the pMin.1 construct is indeed highly immunogenic in HLA-A2.1/K b -H-2 bxs transgenic mice, inducing a broad CTL response directed against each of its six A2.1-restricted epitopes.

To more conveniently compare levels of CTL induction among the different epitopes, the % cytotoxicity values for each splenocyte culture was converted to ΔLU and the mean ΔLU of CTL activity in positive cultures for each epitope was determined (see Example V, materials and methods, for positive criteria). The data, expressed in this manner in Table 11, confirms the breadth of CTL induction elicited by pMin.1 immunization since extremely high CTL responses, ranging between 50 to 700 ΔLU, were observed against the six A2.1-restricted epitopes. More significantly, the responses of several hundred ΔLU observed for five of the six epitopes approached or exceeded that of the Theradigm-HBV lipopeptide, a vaccine formulation known for its high CTL-inducing potency (Vitiello et al., J. Clin. Invest. 95:341 (1995); Livingston et al., J. Immunol. 159:1383 (1997)). The HBV Env 335 epitope was the only epitope showing a lower mean ΔLU response compared to lipopeptide (Table 11, 44 vs 349 ΔLU).

Processing of Minigene Epitopes by Transfected Cells

The decreased CTL response observed against HBV Env 335 was somewhat unexpected since this epitope had good A2.1 binding affinity (IC50%, 5 nM) and was also immunogenic when administered in IFA. The lower response may be due, at least in part, to the inefficient processing of this epitope from the minigene polypeptide by antigen presenting cells following in vivo cDNA immunization. To address this possibility, Jurkat-A2.1/K b tumor cells were transfected with pMin.1 cDNA and the presentation of the HBV Env 335 epitope by transfected cells was compared to more immunogenic A2.1-restricted epitopes using specific CTL lines. Epitope presentation was also studied using tumor cells transfected with a control cDNA construct, pMin.2-GFP, that encoded a similar multi-epitope minigene fused with GFP which allows detection of minigene expression in transfected cells by FACS.

Epitope presentation of the transfected Jurkat cells was analyzed using specific CTL lines, with cytotoxicity or IFN-γ production serving as a read-out. It was found that the levels of CTL response correlated directly with the in vivo immunogenicity of the epitopes. Highly immunogenic epitopes in vivo, such as HBV Core 18, HIV Pol 476, and HBV Pol 455, were efficiently presented to CTL lines by pMin.1- or pMin.2-GFP-transfected cells as measured by IFN-γ production ( FIG. 23A , >100 pg/ml for each epitope) or cytotoxic activity (FIG. 23 C,>30% specific lysis). In contrast to these high levels of in vitro activity, the stimulation of the HBV Env 335-specific CTL line against both populations of transfected cells resulted in less than 12 pg/ml IFN-γ and 3% specific lysis. Although the HBV Env 335-specific CTL line did not recognize the naturally processed epitope efficiently, this line did show an equivalent response to peptide-loaded target cells, as compared to CTL lines specific for the other epitopes ( FIG. 23B , D). Collectively, these results suggest that a processing and/or presentation defect associated with the HBV Env 335 epitope that may contribute to its diminished immunogenicity in vivo.

Effect of the Helper T Cell Epitope PADRE on Minigene Immunogenicity

Having obtained a broad and balanced CTL response in transgenic mice immunized with a minigene cDNA encoding multiple HLA-A2.1-restricted epitopes, next possible variables were examined that could influence the immunogenicity of the prototype construct. This type of analysis could lead to rational and rapid optimization of future constructs. More specifically, a cDNA construct based on the pMin.1 prototype was synthesized in which the PADRE epitope was deleted to examine the contribution of T cell help in minigene immunogenicity (FIG. 24 A).

The results of the immunogenicity analysis indicated that deletion of the PADRE Th cell epitope resulted in significant decreases in the frequency of specific CTL precursors against four of the minigene epitopes (HBV Core 18, HIV Env 120, HBV Pol 455, and HBV Env 335) as indicated by the 17 to 50% CTL-positive cultures observed against these epitopes compared to the 90-100% frequency in animals immunized with the prototype pMin.1 construct (FIG. 25 ). Moreover, for two of the epitopes, HBV Core 18 and HIV Env 120, the magnitude of response in positive cultures induced by pMin.1-No PADRE was 20- to 30-fold less than that of the pMin. 1 construct (FIG. 25 A).

Effect of Modulation of MHC Binding Affinity on Epitope Immunogenicity

Next a construct was synthesized in which the V anchor residue in HBV Pol 551 was replaced with alanine, the native residue, to address the effect of decreasing MHC binding on epitope immunogenicity (FIG. 24 B).

Unlike deletion of the Th cell epitope, decreasing the MHC binding capacity of the HBV Pol 551 epitope by 40-fold through modification of the anchor residue did not appear to affect epitope immunogenicity (FIG. 25 B). The CTL response against the HBV Pol 551 epitope, as well as to the other epitopes, measured either by LU or frequency of CTL-positive cultures, was very similar between the constructs containing the native A or improved V residue at the MHC binding anchor site. This finding reinforces the notion that minimal epitope minigenes can efficiently deliver epitopes of vastly different MHC binding affinities. Furthermore, this finding is particularly relevant to enhancing epitope immunogenicity via different delivery methods, especially in light of the fact that the wild type HBV Pol 551 epitope was essentially nonimmunogenic when delivered in a less potent IFA emulsion.

Effect of the Signal Sequence on Minigene Construct Immunogenicity

The signal sequence was deleted from the pMin.1 construct, thereby preventing processing of the minigene polypeptide in the ER (FIG. 24 C). When the immunogenicity of the pMin.1-No Sig construct was examined, an overall decrease in response was found against four CTL epitopes. Two of these epitopes, HIV Env 120 and HBV Env 335, showed a decrease in frequency of CTL-positive cultures compared to pMin.1 while the remaining epitopes, HBV Pol 455 and HIV Pol 476, showed a 16-fold (from 424 to 27 ΔLU) and 3-fold decrease (709 to 236 ΔLU) in magnitude of the mean CTL response, respectively (FIG. 25 C). These findings suggest that allowing ER-processing of some of the epitopes encoded in the pMin.1 prototype construct may improve immunogenicity, as compared with constructs that allow only cytoplasmic processing of the same panel of epitopes.

Effect of Epitope Rearrangement and Creation of New Junctional Epitopes

In the final construct tested, the immunogenicity of the HBV Env 335 epitope was analyzed to determine whether it may be influenced by its position at the 3′ terminus of the minigene construct (FIG. 24 D). Thus, the position of the Env epitope in the cDNA construct was switched with a more immunogenic epitope, HBV Pol 455, located in the center of the minigene. It should be noted that this modification also created two potentially new epitopes. As shown in FIG. 25D , the transposition of the two epitopes appeared to affect the immunogenicity of not only the transposed epitopes but also more globally of other epitopes. Switching epitopes resulted in obliteration of CTL induction against HBV Env 335 (no positive cultures detected out of six). The CTL response induced by the terminal HBV Pol 455 epitope was also decreased but only slightly (424 vs 78 mean ΔLU). In addition to the switched epitopes, CTL induction against other epitopes in the pMin. 1-Switch construct was also markedly reduced compared to the prototype construct. For example, a CTL response was not observed against the HIV Env 120 epitope and it was significantly diminished against the HBV Core 18 (4 of 6 positive cultures, decrease in mean ΔLU from 306 to 52) and HBV Pol 476 (decrease in mean ΔLU from 709 to 20) epitopes (FIG. 25 D).

As previously mentioned, it should be noted that switching the two epitopes had created new junctional epitopes. Indeed, in the pMin.1-Switch construct, two new potential CTL epitopes were created from sequences of HBV Env 335-HIV Pol 476 (LLVPFVIL (SEQ ID NO:123), H-2K b -restricted) and HBV Env 335-HBV Pol 551 (VLGVWLSLLV (SEQ ID NO:136), HLA-A2.1-restricted) epitopes. Although these junctional epitopes have not been examined to determine whether or not they are indeed immunogenic, this may account for the low immunogenicity of the HBV Env 335 and HIV Pol 476 epitopes. These findings suggest that avoiding junctional epitopes may be important in designing multi-epitope minigenes as is the ability to confirm their immunogenicity in vivo in a biological assay system such as HLA transgenic mice.

Induction of CTLs Against A11 Epitopes Encoded in pMin. 1

To further examine the flexibility of the minigene vaccine approach for inducing a broad CTL response against not only multiple epitopes but also against epitopes restricted by different HLA alleles, HLA-A11K b transgenic mice were immunized to determine whether the three Al I epitopes in the pMin.1 construct were immunogenic for CTLs, as was the case for the A2.1-restricted epitopes in the same construct. As summarized in Table 12, significant CTL induction was observed in a majority of cultures against all three of the HLA-A11-restricted epitopes and the level of CTL immunity induced for the three epitopes, in the range of 40 to 260 ΔLU, exceeded that of peptides delivered in IFA (Table 10). Thus,.nine CTL epitopes of varying HLA restrictions incorporated into a prototype minigene construct all demonstrated significant CTL induction in vivo, confirming that minigene DNA plasmids can serve as means of delivering multiple epitopes, of varying HLA restrictions and MHC binding affinities, to the immune system in an immunogenic fashion and that appropriate transgenic mouse strains can be used to measure DNA construct immunogenicity in vivo.

CTLs were also induced against three A11 epitopes in A11/K b transgenic mice. These responses suggest that minigene delivery of multiple CTL epitopes that confers broad population coverage may be possible in humans and that transgenic animals of appropriate haplotypes may be a useful tools in optimizing the in vivo immunogenicity of minigene DNA. In addition, animals such as monkeys having conserved HLA molecules with cross reactivity to CTL and HTL epitopes recognized by human MHC molecules can be used to determine human immunogenicity of HTL and CTL epitopes (Bertoni et al., J. Immunol. 161:4447-4455 (1998)).

This study represents the first description of the use of HLA transgenic mice to quantitate the in vivo immunogenicity of DNA vaccines, by examining response to epitopes restricted by human HLA antigens. In vivo studies are required to address the variables crucial for vaccine development, that are not easily evaluated by in vitro assays, such as route of administration, vaccine formulation, tissue biodistribution, and involvement of primary and secondary lymphoid organs. Because of its simplicity and flexibility, HLA transgenic mice represent an attractive alternative, at least for initial vaccine development studies, compared to more cumbersome and expensive studies in higher animal species, such as nonhuman primates. The in vitro presentation studies described above further supports the use of HLA transgenic mice for screening DNA constructs containing human epitopes inasmuch as a direct correlation between in vivo immunogenicity and in vitro presentation was observed. Finally, strong CTL responses were observed against all six A 2.1 restricted viral epitopes and in three A11 restricted epitopes encoded in the prototype pMin.1 construct. For five of the A 2.1 restricted epitopes, the magnitude of CTL response approximated that observed with the lipopeptide, Theradigm-HBV, that previously was shown to induce strong CTL responses in humans (Vitiello et al., J. Clin. Invest. 95:341 (1995); Livingston et al., J. Immunol. 159:1383 (1997)).

TABLE 1
HBV derived HTL epitopes
			SEQ ID
Peptide	Sequence	Source	NO:
1298.06	KQAFTFSPTYKAFLC	HBV POL 661	137
F107.03	LQSLTNLLSSNLSWL	RBV POL 412	138
1280.06	AGFFLLTRILTlPQS	HBV ENV 180	139
1280.09	GTSFVYVPSALNPAD	HBV POL 774	140
CF-08	VSFGVWIRTPPAYRPPNAPI	HBV NUC 120	141
27.0280	GVWIRTPPAYRPPNA	HBV NUC 123	142
1186.25	SFGVWIRTPPAYRPP	HBV NUC 121	143
27.0281	RHYLHTLWKAGILYK	HBV POL 145	144
F107.04	PFLLAQFTSAICSVV	HBV POL 523	145
1186.15	LVPFVQWFVGLSPTV	HBV ENV 339	146
1280.15	LHLYSHPllLGFRKl	HBV POL 501	147
1298.04	KQCFRKLPVNRPIDW	HBV POL 615	148
1298.07	AANWILRGTSFVYVP	HBV POL 764	149
857.02	PHHTALRQAILCWGELMTLA	HBV CORE 50	150
35.0100	LCQVFADATPTGWGL	HBV POL 683	151
35.0096	ESRLVVDFSQFSRGN	HBV POL 387	152
35.0093	VGPLTVNEKRRLKLl	HBV POL 96	153
1186.18	NLSWLSLDVSAAFYH	HBV POL 422	154

TABLE 2
HBV derived CTL epitopes
Supertype	Peptide	Sequence	Source	SEQ ID NO:
A2	924.07	FLPSDFFPSV	HBV core 18-27	91
	1013.0102	WLSLLVPFV	HBVadr-ENV (S Ag 335-343)	107
	777.03	FLLTRILTI	HBV ENV ayw 183	155
	927.15	ALMPLYACI	HBV ayw pol 642	156
	1168.02	GLSRYVARL	HBV POL 455	99
	927.11	FLLSLGIHL	HBV pol 562	157
A3	1147.16	HTLWKAGILYK	HBV POL 149	88
	1083.01	STLPETTVVRR	HBV core 141	103
	1090.11	SAICSVVRR	HBV pol 531	158
	1090.10	QAFTFSPTYK	HBV pol 665	159
	1069.16	NVSIPWTHK	HBV pol 47	160
	1069.20	LVVDFSQFSR	HBV pol 388	161
	1142.05	KVGNFTGLY	HBV adr POL 629	162
	1069.15	TLWKAGILYK	HBV pol 150	163
B7	1145.04	IPIPISSWAF	HBV ENV 313	164
	988.05	LPSDFFPSV	HBV core 19-27	165
	1147.04	TPARVTGGVF	HBV POL 354	166
A2	1069.06	LLVPFVQWFV	HBV env 338-347	167
	1147.13	FLLAQFTSAI	HBV POL 513	168
	1147.14	VLLDYQGMLPV	HBV ENV 259	169
	1132.01	LVPFVQWFV	HBV ENV 339	170
	1069.05	LLAQFTSAI	HBV pol 504-512	171
	927.42	NLSWLSLD-V	HBV pol 411	172
	927.41	LLSSNLSWL	HBV pol 992	173
	927.46	KLHLYSHPI	HBV pol 489	174
	1069.071	FLLAQFRSA	HBV pol 503	175
	1142.07	GLLGWSPQA	HBV ENV 62	176
	927.47	HLYSHPIIL	HBV ayw pol 1076	177
	1069.13	PLLPIFFCL	HBV env 377-385	178
	103.1402	VLQAGFFLL	HBVadr-ENV 177	179
	1090.14	YMDDVVLGA	HBV pol 538-546	95
A3	26.0539	RLVVDFSQFSR	HBV pol 376	180
	26.0535	GVWIRTPPAYR	HBV X niuc fus 299	181
A3	26.0153	SSAGPCALR	HBV X 64	182
	1.0993	KVFVLGGCR	HBV adr “X” 1548	183
	26.0149	CALRFTSAR	HBV X 69	184
	26.0023	VSFGVWIR	HBV x nuc fus 296	185
	26.0545	TLPETUVVRRR	HBV x nuc fus 318	186
	20.0131	SVVRRAFPH	HBV POL 524	187
	1.0219	FVLGGCRHK	HBV adr “X” 1550	188
	26.0008	FTFSPTYK	HBV pol 656	189
	20.0130	AFTESPTYK	HBV POL 655	190
B7	1147.05	FPHCLAFSYM	HBV POL 530	191
	1147.08	YPALMPLYA	HBV POL 640	192
	1147.06	LPVCAFSSA	HBV X 58	193
	1147.02	HPAAMPHLL	HBV POL 429	194
	26.0570	YPALMPLYACI	HBV pol 640	195
	19.0014	YPALMPLY	HBV POL 640	196
	1145.08	FPHCLAFSY	HBV POL 541	197
Other	1090.02	AYRPPNAPI	HBV NUC 131	198
	1.0519	DLLDTASALY	HBV adr CORE 419	199
	13.0129	EYLVSFGVWI	HBV NUC 117	200
	20.0254	FAAPFTQCGY	HBV POL 631	201
	2.0060	GYPALMPLY	HBV ALL 1224	202
	1069.04	HTLWKAGILY	HBV pol 149	203
	1069.08	ILLLCLIFLL	HBV env 249-258	204
	1.0166	KVGNFTGLY	HBV adr POL 629	162
	1069.23	KYTSFPWLL	HBV POL 745	205
	1069.01	LLDTASALY	HBV core 59	26
	2.0239	LSLDVSAAFY	HBV ALL 1000	207
	2.0181	LYSRPIILGF	HBV POL 492	208
	1039.01	MMWYWGPSLY	HBV 360	209
	2.0126	MSTTDLEAY	HBV adr 1521	210
	1069.03	PLDKGIKPYY	HBV pol 124	211
	1090.09	PTTGRTSLY	HBV pol 808	212
	20.0138	PWTHKVGNF	HBV POL 51	213
	20.0135	RWMCLRRFI	HBV ENV 236	214
	20.0269	RWMCLRRFII	HBV ENV 236	215
	20.0139	SFCGSPYSW	HBV POL 167	216
Other	1069.02	SLDVSAAFY	RBV pol 427	217
	20.0136	SWLSLLVPF	HBV ENV 334	218
	20.0271	SWPKFAVPNL	HBV POL 392	219
	20.0137	SWWTSLNFL	HBV ENV 197	220
	2.0173	SYQHFRKLLL	HBV POL 4	221
	13.0073	WFHISCLTF	HBV NUC 102	222
	1.0774	WLWGMDIDPY	HBV adw CORE 416	223
	1039.06	WMMWYWGPSLY	HBV env 359	224
	924.14	FLPSDFFPSI	HBv 18-27 I 10 var.	225
	1090.77	YMDDVVLGV	HBV pol 538-546 sub	462
	941.01	FLPSDYFPSV	HBc 18-27 analog	226
	1083.02	STLPETYVVRR	HBV core 141-151 analog	227
	1145.05	FPIPSSWAF	HBV ENV 313 analog	228
	1145.11	FPHCLAFSL	HBV POL 541 analog	229
	1145.24	FPHCLAFAL	HBV POL 541 analog	230
	1145.06	IPITSSWAF	HBV ENV 313 analog	231
	145.23	IPIPMSWAF	HBV ENV 313 analog	232
	1145.07	IPILSSWAF	HBV ENV 313 analog	233
	1145.09	FPVCLAFSY	HBV POL 541 analog	234
	1145.10	FPHCLAFAY	HBV POL 541 analog	235

TABLE 3
HCV derived HTL epitopes
Peptide	Sequence	Source	SEQ ID NO:
	AAYAAQGYKVLVLNPSVAATLGFGAY	HCV NS3 1242-1267	236
P98.03	AAYAAQGYKVLVLNPSVAAT	HCV NS3 1242	237
P98.04	GYKVLVLNPSVAATLGFGAY	HCV NS3 1248	238
P98.05	GYKVLVLNPSVAAT	HCV NS3 1248	239
1283.21	GYKVLVLNPSVAATL	HCV NS3 1253	240
1283.20	AQGYKVLVLNPSVAA	HCV NS3 1251	241
	GEGAVQWMNRLIAFASRGNHVS	HCV NS4 1914-1935	242
F134.08	GEGAVQWMNRLIAFASRGNHV	HCV NS4 1914	243
1283.44	MNRLIAFASRGNHVS	HCV NS4 1921	244
1283.16	SKGWRLLAPITAYAQ	HCV NS3 1025	245
1283.55	GSSYGFQYSPGQRVE	HCV NS5 2641	246
F134.05	NFISGIQYLAGLSTLPGNPA	HCV NS4 1772	247
1283.61	ASCLRKLGVPPLRVW	HCV NS5 2939	248
1283.25	GRHLIFCHSKKKCDE	HCV NS3 1393	249
35.0107	TVDFSLDPTFTIETT	HCV 1466	250
35.0106	VVVVATDALMTGYTG	HCV 1437	251

TABLE 4
HCV derived CTL epitopes
Super-				SEQ
type	Peptide	Sequence	Source	ID NO:
A2	1090.18	FLLLADARV	HCV NS I/E2 728	252
	1073.05	LLFNILGGWV	HCV NS4 1812	253
	1013.02	YLVAYQATV	HCV NS3 1590	254
	1013.1002	DLMGYIPLV	HCV Core 132	255
	1090.22	RLIVFPDLGV	HCV NS5 2611	256
	24.0075	VLVGGVLAA	HCV NS4 1666	257
	24.0073	WMNRLIAFA	HCV NS4 1920	258
	1174.08	HMWNFISGI	HCV NS4 1769	259
	1073.06	ILAGYGAGV	HCV NS4 1851	260
	24.0071	LLFLLLADA	HCV NS1/E2 726	261
	1073.07	YLLPRRGPRL	HCV Core 35	262
	1.0119	YLVTRHADV	HCV NS3 1136	263
A3	1.0952	KTSERSQPR	HCV Core 51	264
	1073.10	GVAGALVAFR	HCV NS4 1863	265
	1.0123	LIFCHSKKK	HCV NS3 1391	266
	1.0955	QLFTFSPRR	HCV E1 290	267
	1073.11	RLGVRATRK	HCV Core 43	268
	1073.13	RMYVGGVEHR	HCV NS1/E2 635	269
	24.0090	VAGALVAFK	HCV NS4 1864	270
	F104.01	VGIYLLPNR	HCV NS5 3036	271
B7	1145.12	LPGCSFSIF	HCV Core 168	272
	29.0035	IPFYGKAI	HCV 1378	273
Other	1069.62	CTCGSSDLY	HCV NS3 1128	274
	24.0092	FWAKHMVNF	HCV NS4 1765	275
	13.0019	LSAFSLRSY	HCV NS5 2922	276
A3	24.0086	LGFGAYMSK	HCV NS3 1267	277
	1174.21	RVCEKMALY	HCV NS5 2621	278
	1174.16	WMNSTGFTK	HCV NS1/E2 557	279
	1073.04	TLHGPTPLLY	HCV NS3 1622	280
B7	16.0012	FPYLVAYQA	HCV NS3 1588	281
	15.0047	YPCTVNFTI	HCV NS1/E2 623	282
Other	24.0093	EVDGVRLHRY	HCV NS5 2129	283
	3.0417	LTCGFADLMGY	HCV 126	284
	1073.01	NIVDVQYLY	HCV E1 700	285
	1.0509	GLSAFSLHSY	HCV NS5 2921	286
	1073.17	MYVGDLCGSVF	HCV E1 275	287
	1073.18	MYVGGVEHRL	HCV NS1/E2 633	288
	13.075	QYLAGLSTL	HCV NS4 1778	289
	1145.13	FPGCSFSIF	HCV Core 168	290
	1145.25	LPGCMFSIF	HCV Core 168	291
	1292.24	LPGCSFSII	HCV Core 169	292
	1145.14	LPVCSFSIF	HCV Core 168	293
	1145.15	LPGCSFSYF	HCV Core 168	294

TABLE 5
HIV derived HTL epitopes
Peptide	Sequence	Source	SEQ ID NO:
	GEIYKRWIILGLNKIVRMYSPTSILD	HIV1 GAG 294-319	295
	KRWIILGLNKIVRMYSPTSILD	HIV gag 298-319	296
27.0313	KRWIILGLNKIVRMY	HIV1 GAG 298	297
27.0311	GEIYKRWIILGLNKI	HIV1 GAG 294	298
27.0354	WEFVNTPPLVKLWYQ	HIV1 POL 596	299
27.0377	QKQITKIQNFRVYYR	HIV1 POL 956	300
	EKVYLAWVPAHKGIGG	HIV1 POL 711-726	301
1280.03	KVYLAWVPAHKGIGG	HIV POL 712	302
27.0361	EKVYLAWVPAHKGIG	HIV1 POL 711	303
	PIVQNIQGQMVHQAISPRTLNA	HIV1 gag 165-186	304
27.0304	QGQMVHQAISPRTLN	HIV1 GAG 171	305
27.0297	QHLLQLTVWGIKQLQ	HIV1 ENV 729	306
27.0344	SPAIFQSSMTKILEP	HIV1 POL 335	307
F091.15	IKQFINMWQEVGKAMY	HIV1 ENV 566	308
27.0341	FRKYTAFTIPSINNE	HIV1 POL 303	309
27.0364	HSNWRAMASDFNLPP	HIV1 POL 758	310
27.0373	KTAVQMAVFIHNFKR	HIV1 POL 915	311
	DRVHPVHAGPIAPGQMREPRGS	HIV GAG 245	312
	AFSPEVIPMFSALSEGATPQDLNTML	HIV gag 195-216	313
	AFSPEVIPMFSALSEGATPQDL	HIV gag 195-216	314
200.06	SALSEGATPQDLNIMLT	HIV gag 205	315
27.0307	SPEVIPMFSALSEGA	HIV gag 197	316
	LQEQIGWMTNNPPIPVGEIYKR	HIV gag 275	317
27.0310	QEQIGWMTNNPPIPV	HIV gag 276	3218
35.0135	YRKILRQRKIDRLID	HIV VPU 31	319
35.0131	WAGIKQEFGIPYNPQ	HIV POL 874	320
35.0127	EVNIVTDSQYALGII	HIV POL 674	321
35.0125	AETFYVDGAANRETK	HIV POL 619	322
35.0133	GAVVIQDNSDIKVVP	HIV POL 989	323

TABLE 6
HIV derived CTL epitopes
Supertype	Peptide	Sequence	Source	SEQ ID NO:
A2	25.0148	MASDFNLPPV	HIV1 POL 70	324
	1069.32	VLAEAMSQV	HIV gag 397	325
	1211.04	KLTPLCVTL	HIV ENV 134	326
	25.0062	KILVGKLNWA	HIV1 POL 87	463
	25.0039	LTFGWCFKL	HIV1 NEF 62	327
	941.031	ILKEPVHGV	HIVI pol 476-484	101
	25.0035	MTNNPPIPV	HIV1 GAG 34	328
	25.0057	RILQQLLFI	HIV1 VPR 72	329
A3	1.0944	AVFIHNFKR	HIV POL 1434	330
	1.1056	KIQNFRVYYR	HIV POL 1474	331
	1069.49	QMAVFIHNFK	HIV pol 1432	332
	966.0102	AIFQSSMTK	HIV pol 337	333
	1150.14	MAVFIHNFK	HIV pol 909	334
	940.03	QVPLRPMTYK	HIV nef 73-82	335
	25.0175	TTLFCASDAK	HIV1 ENV 81	336
	1069.43	TVYYGVPVWK	HIV env 49	105
	25.0209	VTIKIGGQLK	HIV1 POL 65	337
B7	1146.01	FPVRPQVPL	HIV nef 84-92	338
	29.0060	IPIHYCAPA	HIV env 293	339
	15.0073	FPISPIETV	HIV POL 171	340
	29.0056	CPKVSFEPI	HIV env 285	341
	29.0107	IPYNPQSQGVV	HIV pol 883	342
A2	25.0151	CTLNFPISPI	HIV1 POL 96	343
	25.0143	LTPGWCFKLV	HIV1 NEFP 62	344
	25.0043	YTAFTIPSI	HIV1 POL 83	345
	25.0055	AIIRILQQL	HIV1 VPR 76	346
	25.0049	ALVEICTEM	HIV1 POL 52	347
	25.0032	LLQLTVWGI	HIV1 ENV 61	348
	25.0050	LVGPTPVNI	HIV1 POL 100	349
	25.0047	KAACWWAGI	HIV1 POL 65	350
	25.0162	KMIGGIGGFI	HIV1 POL 96	351
	25.0052	RAMASDFNL	HIV1 POL 78	352
	1211.09	SLLNATDIAV	HIV ENV 814	353
A2	25.0041	TLNFPISPI	HIV1 POL 96	354
A3	1.0046	IVIWGKTPK	HIV POL 1075	355
	25.0064	MVHQAISPR	HIV1 GAG 45	356
	1.0062	YLAWVPAHK	HIV POL 1227	357
	1.0942	MTKILEPFR	HIV POL 859	358
	25.0184	QMVHQAISPR	HIV1 GAG 45	359
	1069.48	AVFIHNFKRK	HIV pol 1434	360
	1069.44	KLAGRWPVK	HIV pol 1358	361
	1069.42	KVYLAWVPAHK	HIV pol 1225	362
	1.0024	NTPVFAIKK	HIV pol 752	363
	25.0062	RIVELLGRR	HIV1 ENV 53	364
	25.0095	TIKIGGQLK	HIV1 POL 65	365
	25.0078	TLFCASDAK	HIV1 ENV 82	366
	25.0104	VMIVWQVDR	HIV1 VIF 83	367
	1069.47	VTVYYGVPVWK	HIV env 48	368
B7	15.0268	YPLASLRSLF	HIV GAG 507	369
	1292.13	HPVHAGPIA	HIV GAG 248	370
	19.0044	VPLQLPPL	HJV con. REV 71	371
Other	1.0431	EVNIVTDSQY	HIV POL 1187	372
	1.0014	FRDYVDRFY	HIV GAG 298	373
	25.0113	IWGCSGKLI	HIV1 ENV 69	374
	25.0127	IYETYGDTW	HIV1 VPR 92	375
	1069.60	IYQEPFKNL	HIV pol 1036	376
	2.0129	IYQYMDDLY	HIV pol 359	377
	25.0128	PYNEWTLEL	HIV1 VPR 56	378
	25.0123	PYNTPVFAI	HIV1 POL 74	379
	1069.57	RYLKDQQLL	HIV env 2778	380
	1069.58	RYLRDQQLL	HIV env 2778	381
	1069.59	TYQIYQEPF	HIV pol 1033	382
	1069.27	VIYQYMDDLY	HIV pol 358	383
	1069.26	VTVLDVGDAY	HIV pol 265	384
	25.0115	VWKEATTTL	HIV1 ENV 47	385
	25.0218	VWYEATITLF	HIV1 ENV 47	386
	25.0219	YMQATWIPEW	HIV1 POL 96	387
A2	1211.4	SLLNATAIAV	HIV MN gp 160 814(a)	388
A3	F105.21	AIFQRSMTR	HIV pol 337(a)	389
	F105.17	AIFQSSMTR	HIV pol 337(a)	390
	F105.02	GIFQSSMTY	HIV pol 337(a)	391
	F105.03	AAFQSSMTK	HIV pol 337(a)	392
	F105.04	AIAQSSMTK	HIV pol 337(a)	393
	F105.05	AIFASSMTK	HIV pol 337(a)	394
	F105.06	AIFQASMTK	HIV pol 337(a)	395
	F105.07	AIFQSAMTK	HIV pol 337(a)	396
	F105.08	AIFQSSATK	HIV pol 337(a)	397
	F105.09	AIFQSSMAK	HIV pol 337(a)	398
	F105.11	FIFQSSMTK	HIV pol 337(a)	399
	F105.12	SIFQSSMTK	HIV pol 337(a)	400
	F105.16	AIFQCSMTK	HIV pol 337(a)	401
B7	1145.03	FPVRPQFPL	HIV nef 84-92 analog	402
	1181.03	FPVRPQVPI	HIV nef 84-92(a)	403
	1292.14	HPVHAGPII	HIV GAG 248	404
	1292.09	FPISPIETI	HIV POL 179	405
	1145.02	FPVFQVPL	HIV nef 84-92 analog	406
	1145.22	TPVRMQVPL	HIV nef 84-92 analog	407
	1181.04	FPVRPQVPM	HIV nef 84-92(a)	408
	1181.01	FPVRPQVPA	HIV nef 84-92(a)	409
	1181.02	FPVRPQVPV	HIV nef 84-92(a)	410
	1181.05	FPVRPQVPF	HIV nef 84-92(a)	411
	1181.06	FPVRPQVPW	HIV nef 84-92(a)	412

TABLE 7
P. falciparum derived HTL epitopes
Peptide	Sequence	Source	SEQ ID NO:
F125.04	RHNWVNHAVPLAMKLI	Pf SSP2 61	473
1188.34	HNWVNHAVPLAMKLI	Pf SSP2 62	414
1188.16	KSKYKLATSVLAGLL	Pf EXP1 71	415
	LVNLLIFHINGKIIKNSE	Pf LSA1 13	416
F125.02	LVNLLIFHINGKIIKNS	Pf LSA1 13	417
27.0402	LLIFHINGKIIKNSE	Pf LSA1 16	418
1188.32	GLAYKFVVPGAATPY	Pf SSP2 512	419
27.0392	SSVFNVVNSSIGLIM	Pf CSP 410	420
27.0417	VKNVTGPFMKAVCVE	Pf SSP2 223	421
27.0388	MRKLAILSVSSFLFV	Pf CSP 2	422
27.0387	MNYYGKQENWYSLKK	Pf CSP 53	423
1188.38	KYKIAGGIAGGLALL	Pf SSP2 494	424
1188.13	AGLLGNVSTVLLGGV	Pf EXP1 82	425
27.0408	QTNFKSLLRNLGVSE	Pf LSA1 94	426
35.0171	PDSIQDSLKESRKLN	Pf SSP2 165	427
35.0172	KCNLYADSAWENVKN	Pf SSP2 211	428

TABLE 8
P. falciparum derived CTL epitopes
Supertype	Peptide	Sequence	Source	SEQ ID NO:
A2	1167.21	FLIFFDLFLV	Pf SSP2 14	429
	1167.08	GLIMVLSFL	Pf CSP 425	430
	1167.12	VLAGLLGNV	Pf EXP1 80	431
	1167.13	KILSVFFLA	Pf EXP1 2	432
	1167.10	GLLGNVSTV	Pf EXP183	433
	1167.18	ILSVSSFLFV	Pf CSP 7	434
	1167.19	VLLGGVGLVL	Pf EXP 1 91	435
A3	1167.36	LACAGLAYK	Pf SSP2 511	436
	1167.32	QTNFKSLLR	Pf LSA1 94	437
	1167.43	VTCGNGIQVR	Pf CSP 375	438
	1167.24	ALFFIINK	Pf EXP1 10	439
	167.28	GVSENIFLK	Pf LSA 1 105	440
	1167.47	HVLSHNSYEK	Pf LSA1 59	441
	1167.51	LLACAGLAYK	Pf SSP2 510	442
	1167.46	FILVNLLIFH	Pf LSA1 11	443
B7	1101.03	MPLETQLAI	Pf SHEBA 77	444
	1167.61	TPYAGEPAPF	Pf SSP2 539	445
A2	1167.14	FLIFFDLFL	Pf SSP2 14	446
	1167.16	FMKAVCVEV	Pf SSP2 230	447
	1167.15	LIFFDLFLV	Pf SSP2 15	448
	1167.17	LLMDCSGSI	Pf SSP2 51	449
	1167.09	VLLGGVGLV	Pf EXP1 91	450
B7	19.0051	LPYGRTNL	Pf SSP2 126	451
Other	16.0245	FQDEENIGIY	Pf LSA1 1794	452
	16.0040	FVEALFQEY	Pf CSP 15	453
	1167.54	FYFTLVNLL	Pf LSA1 9	454
	1167.53	KYKLATSVL	Pf EXP1 73	455
	1167.56	KYLVIVFLI	Pf SSP2 8	456
	15.0184	LPSENERGY	Pf LSA1 1663	457
	16.0130	PSDGKCNLY	Pf SSP2 207	458
	16.0077	PSENERGYY	Pf LSA 1 1664	459
	1167.57	PYAGEPAPF	Pf SSP2 528	460
	1167.55	YYIPHQSSL	Pf LSA1 1671	461

TABLE 9
Activation of T Cell Proliferation by Expression
Vectors Encoding MHC Class II Epitopes Fused to MHC
Class II Targeting Sequences
	Stimulating Peptide 1
Immunogen	PADRE	OVA 323	CORE 128
peptide + CFA 2	3.0 (1.1)	2.7 (1.2)	3.2 (1.4)
pEP2.(PAOS).(-)	—	—	—
pEP2.(AOS).(-)	5.6 (1.8)	—	—
pEP2.(PAOS).(sigTh)	5.0 (2.9)	—	2.6 (1.5)
pEP2.(PAOS).(IgαTh)	5.6 (2.1)	—	3.0 (1.6)
pEP2.(PAOS).(LampTh)	3.8 (1.7)	—	3
pEP2.(PAOS).(IiTh)	5.2 (2.0)	3.2 (1.5)	3.7 (1.5)
pEP2.(PAOS).(H2M)	3.3 (1.3)	—	2.8
1 Geometric mean of cultures with SI ≧ 2.
2 Proliferative response measured in the lymph node.

TABLE 10
CTL Epitopes in CDNA Minigene
	MHC	Immunogenicity In Vivo (IFA)
			Binding	No. CTL-	CTL Response
		MHC	Affinity	Positive	(Geo. Mean
Epitope	Sequence	Restrict.	[IC30%	Cultures	ΔLU	SEQ ID NO:
HBV Core 18	FLPSDFFPSV WLSLLVPFV	A2.1	(nM)	6/6	73.0 (1.1)	91
HBV Env 335	GLSRYVARL KLTPLCVTL	A2.1	3	4/6	5.3 (1.6)	107
HBV Pol 455	ILKEPVRGV YMDDVVLGA	A2.1	5	ND c	ND	99
HIV Env 120	YMDDVVLGV	A2.1	76	2/5	6.4 (1.3)	93
HIV Pol 476	TVYYGVPVWK	A2.1	102	2/5	15.2 (2.9)	101
HBV Pol 55 1-A	STLPETRVVRR	A2.1	192	0/6	—	95
HBV Pol 55 1-V	HTLWKAGILYK	A2.1	200	6/6	8.2 (2.3)	—
HIV Env 49		A11	5	28/33	13.4 (3.1)	105
HBV Core 141		A11	4	6/6	12.1 (2.6)	103
HBV Pol 149		A11	4	6/6	13.1 (1.2)
			14
						8
a Peptide tested in HLA-A2.1/K b H-2 bxs transgenic mice by co-immunizing with a T helper cell peptide in IFA.
b Geometric mean CTL response of positive cultures.
c ND, not done.

TABLE 11
Summary of Immunogenicity of pMin.1 DNA
construct in HLA A2.l/K b transgenic mice
	CTL Response a
		Geo. Mean Response Positive
	No. Positive	Cultures [×/÷ SD]
Epitope	Cultures/Total b	ΔLU
HBV Core 18	9/9	455.5 [2.2]
HIV Env 120	12/12	211.9 [3.7]
HBV Pol 551-V	9/9	126.1 [2.8]
HBV Pol 455	12/12	738.6 [1.3]
HIV Pol 476	11/11	716.7 [1.5]
HBV Env 335	12/12	43.7 [1.8]
HBV Core 18	10/10	349.3 [1.8]
(Theradigm) c
a Mice were immunized with pMin.1 DNA or Theradigm-HBV lipopeptide and CTL activity in splenocyte cultures was determined after in vitro stimulation with individual peptide epitopes. Results from four independent experiments are shown.
b See Example V, Materials and Methods for definition of a CTL-positive culture.
c Response of mice immunized with Theradigm-HBV lipopeptide containing the HBV Core 18 epitope.

TABLE 12
Summary of immunogenicity
in HLA A11/K b transgenic mice
	CTL Response a
		Geo. Mean Response
	No. Positive	Positive Cultures [×/÷ SD]
Epitope	Cultures/Total b	ΔLU
HBV Core 141	5/9	128.1 [1.6]
HBV Pol 149	6/9	267.1 [2.2]
HIV Env 43	9/9	40.1 [2.9]
a Mice were immunized with pMin.1 DNA and CTL activity in splenocyte cultures was determined after in vitro stimulation with individual A11-restricted epitopes. The geometric mean CTL response from three independent experiments are shown.
b Definition of a CTL-positive culture is described in Example V, Materials and Methods.

463 1 669 DNA Artificial Sequence IiPADRE construct encoding fusion of murine Ii gene with pan DR epitope sequences substituted for CLIP sequence 1gctagcgccg ccacc atg gat gac caa cgc gac ctc atc tct aac cat gag 51 Met Asp Asp Gln Arg Asp Leu Ile Ser Asn His Glu 1 5 10caa ttg ccc ata ctg ggc aac cgc cct aga gag cca gaa agg tgc agc 99Gln Leu Pro Ile Leu Gly Asn Arg Pro Arg Glu Pro Glu Arg Cys Ser 15 20 25cgt gga gct ctg tac acc ggt gtt tct gtc ctg gtg gct ctg ctc ttg 147Arg Gly Ala Leu Tyr Thr Gly Val Ser Val Leu Val Ala Leu Leu Leu 30 35 40gct ggg cag gcc acc act gct tac ttc ctg tac cag caa cag ggc cgc 195Ala Gly Gln Ala Thr Thr Ala Tyr Phe Leu Tyr Gln Gln Gln Gly Arg 45 50 55 60cta gac aag ctg acc atc acc tcc cag aac ctg caa ctg gag agc ctt 243Leu Asp Lys Leu Thr Ile Thr Ser Gln Asn Leu Gln Leu Glu Ser Leu 65 70 75cgc atg aag ctt ccg aaa tct gcc aaa cct gtg gcc aag ttc gtg gct 291Arg Met Lys Leu Pro Lys Ser Ala Lys Pro Val Ala Lys Phe Val Ala 80 85 90gcc tgg acc ctg aag gct gcc gct atg tcc atg gat aac atg ctc ctt 339Ala Trp Thr Leu Lys Ala Ala Ala Met Ser Met Asp Asn Met Leu Leu 95 100 105ggg cct gtg aag aac gtt acc aag tac ggc aac atg acc cag gac cat 387Gly Pro Val Lys Asn Val Thr Lys Tyr Gly Asn Met Thr Gln Asp His 110 115 120gtg atg cat ctg ctc acg agg tct gga ccc ctg gag tac ccg cag ctg 435Val Met His Leu Leu Thr Arg Ser Gly Pro Leu Glu Tyr Pro Gln Leu125 130 135 140aag ggg acc ttc cca gag aat ctg aag cat ctt aag aac tcc atg gat 483Lys Gly Thr Phe Pro Glu Asn Leu Lys His Leu Lys Asn Ser Met Asp 145 150 155ggc gtg aac tgg aag atc ttc gag agc tgg atg aag cag tgg ctc ttg 531Gly Val Asn Trp Lys Ile Phe Glu Ser Trp Met Lys Gln Trp Leu Leu 160 165 170ttt gag atg agc aag aac tcc ctg gag gag aag aag ccc acc gag gct 579Phe Glu Met Ser Lys Asn Ser Leu Glu Glu Lys Lys Pro Thr Glu Ala 175 180 185cca cct aaa gag cca ctg gac atg gaa gac cta tct tct ggc ctg gga 627Pro Pro Lys Glu Pro Leu Asp Met Glu Asp Leu Ser Ser Gly Leu Gly 190 195 200gtg acc agg cag gaa ctg ggt caa gtc acc ctg tgaggtacc 669Val Thr Arg Gln Glu Leu Gly Gln Val Thr Leu205 210 215 2 215 PRT Artificial Sequence IiPADRE 2Met Asp Asp Gln Arg Asp Leu Ile Ser Asn His Glu Gln Leu Pro Ile 1 5 10 15Leu Gly Asn Arg Pro Arg Glu Pro Glu Arg Cys Ser Arg Gly Ala Leu 20 25 30Tyr Thr Gly Val Ser Val Leu Val Ala Leu Leu Leu Ala Gly Gln Ala 35 40 45Thr Thr Ala Tyr Phe Leu Tyr Gln Gln Gln Gly Arg Leu Asp Lys Leu 50 55 60Thr Ile Thr Ser Gln Asn Leu Gln Leu Glu Ser Leu Arg Met Lys Leu65 70 75 80Pro Lys Ser Ala Lys Pro Val Ala Lys Phe Val Ala Ala Trp Thr Leu 85 90 95Lys Ala Ala Ala Met Ser Met Asp Asn Met Leu Leu Gly Pro Val Lys 100 105 110Asn Val Thr Lys Tyr Gly Asn Met Thr Gln Asp His Val Met His Leu 115 120 125Leu Thr Arg Ser Gly Pro Leu Glu Tyr Pro Gln Leu Lys Gly Thr Phe 130 135 140Pro Glu Asn Leu Lys His Leu Lys Asn Ser Met Asp Gly Val Asn Trp145 150 155 160Lys Ile Phe Glu Ser Trp Met Lys Gln Trp Leu Leu Phe Glu Met Ser 165 170 175Lys Asn Ser Leu Glu Glu Lys Lys Pro Thr Glu Ala Pro Pro Lys Glu 180 185 190Pro Leu Asp Met Glu Asp Leu Ser Ser Gly Leu Gly Val Thr Arg Gln 195 200 205Glu Leu Gly Gln Val Thr Leu 210 215 3 438 DNA Artificial Sequence I80T construct encoding fusion of the cytoplasmic, transmembrane and part of the luminal domains of murine Ii protein gene fused to multiple MHC class II epitopes 3gctagcgccg ccacc atg gat gac caa cgc gac ctc atc tct aac cat gag 51 Met Asp Asp Gln Arg Asp Leu Ile Ser Asn His Glu 1 5 10caa ttg ccc ata ctg ggc aac cgc cct aga gag cca gaa agg tgc agc 99Gln Leu Pro Ile Leu Gly Asn Arg Pro Arg Glu Pro Glu Arg Cys Ser 15 20 25cgt gga gct ctg tac acc ggt gtt tct gtc ctg gtg gct ctg ctc ttg 147Arg Gly Ala Leu Tyr Thr Gly Val Ser Val Leu Val Ala Leu Leu Leu 30 35 40gct ggg cag gcc acc act gct tac ttc ctg tac cag caa cag ggc cgc 195Ala Gly Gln Ala Thr Thr Ala Tyr Phe Leu Tyr Gln Gln Gln Gly Arg 45 50 55 60cta gac aag ctg acc atc acc tcc cag aac ctg caa ctg gag agc ctt 243Leu Asp Lys Leu Thr Ile Thr Ser Gln Asn Leu Gln Leu Glu Ser Leu 65 70 75cgc atg aag ctt atc agc cag gct gtg cac gcc gct cac gcc gaa atc 291Arg Met Lys Leu Ile Ser Gln Ala Val His Ala Ala His Ala Glu Ile 80 85 90aac gaa gct gga aga acc cct cca gct tat cgc cct cca aac gct cct 339Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala Pro 95 100 105atc ctg ttc ttt ctg ctg acc aga atc ctg aca atc ccc cag tcc ctg 387Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser Leu 110 115 120gac gcc aag ttc gtg gct gcc tgg acc ctg aag gct gcc gct 429Asp Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala125 130 135tgaggtacc 438 4 138 PRT Artificial Sequence I80T 4Met Asp Asp Gln Arg Asp Leu Ile Ser Asn His Glu Gln Leu Pro Ile 1 5 10 15Leu Gly Asn Arg Pro Arg Glu Pro Glu Arg Cys Ser Arg Gly Ala Leu 20 25 30Tyr Thr Gly Val Ser Val Leu Val Ala Leu Leu Leu Ala Gly Gln Ala 35 40 45Thr Thr Ala Tyr Phe Leu Tyr Gln Gln Gln Gly Arg Leu Asp Lys Leu 50 55 60Thr Ile Thr Ser Gln Asn Leu Gln Leu Glu Ser Leu Arg Met Lys Leu65 70 75 80Ile Ser Gln Ala Val His Ala Ala His Ala Glu Ile Asn Glu Ala Gly 85 90 95Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala Pro Ile Leu Phe Phe 100 105 110Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser Leu Asp Ala Lys Phe 115 120 125Val Ala Ala Trp Thr Leu Lys Ala Ala Ala 130 135 5 783 DNA Artificial Sequence IiThfull construct encoding fusion of the cytoplasmic, transmembrane and part of the luminal domains of the murine Ii protein gene fused to multiple T helper epitopes and amino acid residues 101-215 trimerization region of the Ii protein 5gctagcgccg ccacc atg gat gac caa cgc gac ctc atc tct aac cat gag 51 Met Asp Asp Gln Arg Asp Leu Ile Ser Asn His Glu 1 5 10caa ttg ccc ata ctg ggc aac cgc cct aga gag cca gaa agg tgc agc 99Gln Leu Pro Ile Leu Gly Asn Arg Pro Arg Glu Pro Glu Arg Cys Ser 15 20 25cgt gga gct ctg tac acc ggt gtt tct gtc ctg gtg gct ctg ctc ttg 147Arg Gly Ala Leu Tyr Thr Gly Val Ser Val Leu Val Ala Leu Leu Leu 30 35 40gct ggg cag gcc acc act gct tac ttc ctg tac cag caa cag ggc cgc 195Ala Gly Gln Ala Thr Thr Ala Tyr Phe Leu Tyr Gln Gln Gln Gly Arg 45 50 55 60cta gac aag ctg acc atc acc tcc cag aac ctg caa ctg gag agc ctt 243Leu Asp Lys Leu Thr Ile Thr Ser Gln Asn Leu Gln Leu Glu Ser Leu 65 70 75cgc atg aag ctt atc agc cag gct gtg cac gcc gct cac gcc gaa atc 291Arg Met Lys Leu Ile Ser Gln Ala Val His Ala Ala His Ala Glu Ile 80 85 90aac gaa gct gga aga acc cct cca gct tat cgc cct cca aac gct cct 339Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala Pro 95 100 105atc ctg ttc ttt ctg ctg acc aga atc ctg aca atc ccc cag tcc ctg 387Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser Leu 110 115 120gac gcc aag ttc gtg gct gcc tgg acc ctg aag gct gcc gct atg tcc 435Asp Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Met Ser125 130 135 140atg gat aac atg ctc ctt ggg cct gtg aag aac gtt acc aag tac ggc 483Met Asp Asn Met Leu Leu Gly Pro Val Lys Asn Val Thr Lys Tyr Gly 145 150 155aac atg acc cag gac cat gtg atg cat ctg ctc acg agg tct gga ccc 531Asn Met Thr Gln Asp His Val Met His Leu Leu Thr Arg Ser Gly Pro 160 165 170ctg gag tac ccg cag ctg aag ggg acc ttc cca gag aat ctg aag cat 579Leu Glu Tyr Pro Gln Leu Lys Gly Thr Phe Pro Glu Asn Leu Lys His 175 180 185ctt aag aac tcc atg gat ggc gtg aac tgg aag atc ttc gag agc tgg 627Leu Lys Asn Ser Met Asp Gly Val Asn Trp Lys Ile Phe Glu Ser Trp 190 195 200atg aag cag tgg ctc ttg ttt gag atg agc aag aac tcc ctg gag gag 675Met Lys Gln Trp Leu Leu Phe Glu Met Ser Lys Asn Ser Leu Glu Glu205 210 215 220aag aag ccc acc gag gct cca cct aaa gag cca ctg gac atg gaa gac 723Lys Lys Pro Thr Glu Ala Pro Pro Lys Glu Pro Leu Asp Met Glu Asp 225 230 235cta tct tct ggc ctg gga gtg acc agg cag gaa ctg ggt caa gtc acc 771Leu Ser Ser Gly Leu Gly Val Thr Arg Gln Glu Leu Gly Gln Val Thr 240 245 250ctg tgaggtacc 783Leu 6 253 PRT Artificial Sequence IiThfull 6Met Asp Asp Gln Arg Asp Leu Ile Ser Asn His Glu Gln Leu Pro Ile 1 5 10 15Leu Gly Asn Arg Pro Arg Glu Pro Glu Arg Cys Ser Arg Gly Ala Leu 20 25 30Tyr Thr Gly Val Ser Val Leu Val Ala Leu Leu Leu Ala Gly Gln Ala 35 40 45Thr Thr Ala Tyr Phe Leu Tyr Gln Gln Gln Gly Arg Leu Asp Lys Leu 50 55 60Thr Ile Thr Ser Gln Asn Leu Gln Leu Glu Ser Leu Arg Met Lys Leu65 70 75 80Ile Ser Gln Ala Val His Ala Ala His Ala Glu Ile Asn Glu Ala Gly 85 90 95Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala Pro Ile Leu Phe Phe 100 105 110Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser Leu Asp Ala Lys Phe 115 120 125Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Met Ser Met Asp Asn Met 130 135 140Leu Leu Gly Pro Val Lys Asn Val Thr Lys Tyr Gly Asn Met Thr Gln145 150 155 160Asp His Val Met His Leu Leu Thr Arg Ser Gly Pro Leu Glu Tyr Pro 165 170 175Gln Leu Lys Gly Thr Phe Pro Glu Asn Leu Lys His Leu Lys Asn Ser 180 185 190Met Asp Gly Val Asn Trp Lys Ile Phe Glu Ser Trp Met Lys Gln Trp 195 200 205Leu Leu Phe Glu Met Ser Lys Asn Ser Leu Glu Glu Lys Lys Pro Thr 210 215 220Glu Ala Pro Pro Lys Glu Pro Leu Asp Met Glu Asp Leu Ser Ser Gly225 230 235 240Leu Gly Val Thr Arg Gln Glu Leu Gly Gln Val Thr Leu 245 250 7 378 DNA Artificial Sequence KappaLAMP-Th construct encoding fusion of murine immunoglobulin kappa signal sequence fused to multiple T helper epitopes and the cytoplasmic and transmembrane domains of human lysosomal membrane glycoprotein-1 (LAMP-1) 7gctagcgccg ccacc atg gga atg cag gtg cag atc cag agc ctg ttt ctg 51 Met Gly Met Gln Val Gln Ile Gln Ser Leu Phe Leu 1 5 10ctc ctc ctg tgg gtg ccc ggg tcc aga gga atc agc cag gct gtg cac 99Leu Leu Leu Trp Val Pro Gly Ser Arg Gly Ile Ser Gln Ala Val His 15 20 25gcc gct cac gcc gaa atc aac gaa gct gga aga acc cct cca gct tat 147Ala Ala His Ala Glu Ile Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr 30 35 40cgc cct cca aac gct cct atc ctg ttc ttt ctg ctg acc aga atc ctg 195Arg Pro Pro Asn Ala Pro Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu 45 50 55 60aca atc ccc cag tcc ctg gac gcc aag ttc gtg gct gcc tgg acc ctg 243Thr Ile Pro Gln Ser Leu Asp Ala Lys Phe Val Ala Ala Trp Thr Leu 65 70 75aag gct gcc gct aac aac atg ttg atc ccc att gct gtg ggc ggt gcc 291Lys Ala Ala Ala Asn Asn Met Leu Ile Pro Ile Ala Val Gly Gly Ala 80 85 90ctg gca ggg ctg gtc ctc atc gtc ctc att gcc tac ctc att ggc agg 339Leu Ala Gly Leu Val Leu Ile Val Leu Ile Ala Tyr Leu Ile Gly Arg 95 100 105aag agg agt cac gcc ggc tat cag acc atc tagggtacc 378Lys Arg Ser His Ala Gly Tyr Gln Thr Ile 110 115 8 118 PRT Artificial Sequence KappaLAMP-Th 8Met Gly Met Gln Val Gln Ile Gln Ser Leu Phe Leu Leu Leu Leu Trp 1 5 10 15Val Pro Gly Ser Arg Gly Ile Ser Gln Ala Val His Ala Ala His Ala 20 25 30Glu Ile Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn 35 40 45Ala Pro Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln 50 55 60Ser Leu Asp Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala65 70 75 80Asn Asn Met Leu Ile Pro Ile Ala Val Gly Gly Ala Leu Ala Gly Leu 85 90 95Val Leu Ile Val Leu Ile Ala Tyr Leu Ile Gly Arg Lys Arg Ser His 100 105 110Ala Gly Tyr Gln Thr Ile 115 9 381 DNA Artificial Sequence H2M-Th construct encoding fusion of signal sequence of H2-M fused to multiple MHC class II epitopes and the cytoplasmic and transmembrane domains of H2-M 9gctagcgccg ccacc atg gct gca ctc tgg ctg ctg ctg ctg gtc ctc agt 51 Met Ala Ala Leu Trp Leu Leu Leu Leu Val Leu Ser 1 5 10ctg cac tgt atg ggg atc agc cag gct gtg cac gcc gct cac gcc gaa 99Leu His Cys Met Gly Ile Ser Gln Ala Val His Ala Ala His Ala Glu 15 20 25atc aac gaa gct gga aga acc cct cca gct tat cgc cct cca aac gct 147Ile Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala 30 35 40cct atc ctg ttc ttt ctg ctg acc aga atc ctg aca atc ccc cag tcc 195Pro Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser 45 50 55 60ctg gac gcc aag ttc gtg gct gcc tgg acc ctg aag gct gcc gct aag 243Leu Asp Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Lys 65 70 75gtc tct gtg tct gca gcc acc ctg ggc ctg ggc ttc atc atc ttc tgt 291Val Ser Val Ser Ala Ala Thr Leu Gly Leu Gly Phe Ile Ile Phe Cys 80 85 90gtt ggc ttc ttc aga tgg cgc aag tct cat tcc tcc agc tac act cct 339Val Gly Phe Phe Arg Trp Arg Lys Ser His Ser Ser Ser Tyr Thr Pro 95 100 105ctc cct gga tcc acc tac cca gaa gga cgg cat tagggtacc 381Leu Pro Gly Ser Thr Tyr Pro Glu Gly Arg His 110 115 10 119 PRT Artificial Sequence H2M-Th 10Met Ala Ala Leu Trp Leu Leu Leu Leu Val Leu Ser Leu His Cys Met 1 5 10 15Gly Ile Ser Gln Ala Val His Ala Ala His Ala Glu Ile Asn Glu Ala 20 25 30Gly Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala Pro Ile Leu Phe 35 40 45Phe Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser Leu Asp Ala Lys 50 55 60Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Lys Val Ser Val Ser65 70 75 80Ala Ala Thr Leu Gly Leu Gly Phe Ile Ile Phe Cys Val Gly Phe Phe 85 90 95Arg Trp Arg Lys Ser His Ser Ser Ser Tyr Thr Pro Leu Pro Gly Ser 100 105 110Thr Tyr Pro Glu Gly Arg His 115 11 432 DNA Artificial Sequence H2O-Th construct encoding fusion of signal sequence of H2-DO fused to multiple MHC class II epitopes and the cytoplasmic and transmembrane domains of H2-DO 11gctagcgccg ccacc atg ggc gct ggg agg gcc ccc tgg gtg gtg gct ctg 51 Met Gly Ala Gly Arg Ala Pro Trp Val Val Ala Leu 1 5 10ttg gtg aac ctc atg agg ctg gat tcc atc agc cag gct gtg cac gcc 99Leu Val Asn Leu Met Arg Leu Asp Ser Ile Ser Gln Ala Val His Ala 15 20 25gct cac gcc gaa atc aac gaa gct gga aga acc cct cca gct tat cgc 147Ala His Ala Glu Ile Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr Arg 30 35 40cct cca aac gct cct atc ctg ttc ttt ctg ctg acc aga atc ctg aca 195Pro Pro Asn Ala Pro Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu Thr 45 50 55 60atc ccc cag tcc ctg gac gcc aag ttc gtg gct gcc tgg acc ctg aag 243Ile Pro Gln Ser Leu Asp Ala Lys Phe Val Ala Ala Trp Thr Leu Lys 65 70 75gct gcc gct ata ctg agt gga gct gca gtg ttc ctg ctt ggg ctg att 291Ala Ala Ala Ile Leu Ser Gly Ala Ala Val Phe Leu Leu Gly Leu Ile 80 85 90gtc ttc ctg gtg ggg gtt gtt atc cat ctc aag gct cag aaa gca tct 339Val Phe Leu Val Gly Val Val Ile His Leu Lys Ala Gln Lys Ala Ser 95 100 105gtg gag act cag cct ggc aat gag agt agg tcc cgg atg atg gag cgg 387Val Glu Thr Gln Pro Gly Asn Glu Ser Arg Ser Arg Met Met Glu Arg 110 115 120cta acc aag ttc aag gct gga ccg gga cat gtc aca tgaggtacc 432Leu Thr Lys Phe Lys Ala Gly Pro Gly His Val Thr125 130 135 12 136 PRT Artificial Sequence H2O-Th 12Met Gly Ala Gly Arg Ala Pro Trp Val Val Ala Leu Leu Val Asn Leu 1 5 10 15Met Arg Leu Asp Ser Ile Ser Gln Ala Val His Ala Ala His Ala Glu 20 25 30Ile Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala 35 40 45Pro Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser 50 55 60Leu Asp Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Ile65 70 75 80Leu Ser Gly Ala Ala Val Phe Leu Leu Gly Leu Ile Val Phe Leu Val 85 90 95Gly Val Val Ile His Leu Lys Ala Gln Lys Ala Ser Val Glu Thr Gln 100 105 110Pro Gly Asn Glu Ser Arg Ser Arg Met Met Glu Arg Leu Thr Lys Phe 115 120 125Lys Ala Gly Pro Gly His Val Thr 130 135 13 816 DNA Artificial Sequence PADRE-Influenza matrix construct encoding fusion of pan DR epitope sequence to amino-terminus of influenza matrix protein gene 13gctagcgccg ccacc atg gcc aag ttc gtg gct gcc tgg acc ctg aag gct 51 Met Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala 1 5 10gcc gct atg agt ctt cta acc gag gtc gaa acg tac gtt ctc tct atc 99Ala Ala Met Ser Leu Leu Thr Glu Val Glu Thr Tyr Val Leu Ser Ile 15 20 25atc cca tca ggc ccc ctc aaa gcc gag atc gcg cag aga ctt gag gat 147Ile Pro Ser Gly Pro Leu Lys Ala Glu Ile Ala Gln Arg Leu Glu Asp 30 35 40gtt ttt gca ggg aag aac aca gat ctt gag gct ctc atg gaa tgg cta 195Val Phe Ala Gly Lys Asn Thr Asp Leu Glu Ala Leu Met Glu Trp Leu 45 50 55 60aag aca aga cca atc ctg tca cct ctg act aag gga att tta ggg ttt 243Lys Thr Arg Pro Ile Leu Ser Pro Leu Thr Lys Gly Ile Leu Gly Phe 65 70 75gtg ttc acg ctc acc gtg ccc agt gag cga gga ctg cag cgt aga cga 291Val Phe Thr Leu Thr Val Pro Ser Glu Arg Gly Leu Gln Arg Arg Arg 80 85 90ttt gtc caa aat gcc cta aat ggg aat gga gac cca aac aac atg gac 339Phe Val Gln Asn Ala Leu Asn Gly Asn Gly Asp Pro Asn Asn Met Asp 95 100 105agg gca gtt aaa cta tac aag aag ctg aag agg gaa atg aca ttc cat 387Arg Ala Val Lys Leu Tyr Lys Lys Leu Lys Arg Glu Met Thr Phe His 110 115 120gga gca aag gaa gtt gca ctc agt tac tca act ggt gcg ctt gcc agt 435Gly Ala Lys Glu Val Ala Leu Ser Tyr Ser Thr Gly Ala Leu Ala Ser125 130 135 140tgc atg ggt ctc ata tac aac cgg atg gga aca gtg acc aca gaa gtg 483Cys Met Gly Leu Ile Tyr Asn Arg Met Gly Thr Val Thr Thr Glu Val 145 150 155gct ctt ggc cta gta tgt gcc act tgt gag cag att gct gat gcc caa 531Ala Leu Gly Leu Val Cys Ala Thr Cys Glu Gln Ile Ala Asp Ala Gln 160 165 170cat cgg tcc cac agg cag atg gcg act acc acc aac cca cta atc agg 579His Arg Ser His Arg Gln Met Ala Thr Thr Thr Asn Pro Leu Ile Arg 175 180 185cat gag aac aga atg gta cta gcc agc act acg gct aag gcc atg gag 627His Glu Asn Arg Met Val Leu Ala Ser Thr Thr Ala Lys Ala Met Glu 190 195 200caa atg gct gga tca agt gag cag gca gca gag gcc atg gaa gtc gca 675Gln Met Ala Gly Ser Ser Glu Gln Ala Ala Glu Ala Met Glu Val Ala205 210 215 220agt cag gct aga caa atg gtg cag gca atg agg aca att ggg act cac 723Ser Gln Ala Arg Gln Met Val Gln Ala Met Arg Thr Ile Gly Thr His 225 230 235cct agc tcc agt gca ggt cta aaa gat gat ctt att gaa aat ttg cag 771Pro Ser Ser Ser Ala Gly Leu Lys Asp Asp Leu Ile Glu Asn Leu Gln 240 245 250gct tac cag aaa cgg atg ggg gtg cag atg cag cga ttc aag 813Ala Tyr Gln Lys Arg Met Gly Val Gln Met Gln Arg Phe Lys 255 260 265tga 816 14 266 PRT Artificial Sequence PADRE-Influenza matrix 14Met Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Met Ser 1 5 10 15Leu Leu Thr Glu Val Glu Thr Tyr Val Leu Ser Ile Ile Pro Ser Gly 20 25 30Pro Leu Lys Ala Glu Ile Ala Gln Arg Leu Glu Asp Val Phe Ala Gly 35 40 45Lys Asn Thr Asp Leu Glu Ala Leu Met Glu Trp Leu Lys Thr Arg Pro 50 55 60Ile Leu Ser Pro Leu Thr Lys Gly Ile Leu Gly Phe Val Phe Thr Leu65 70 75 80Thr Val Pro Ser Glu Arg Gly Leu Gln Arg Arg Arg Phe Val Gln Asn 85 90 95Ala Leu Asn Gly Asn Gly Asp Pro Asn Asn Met Asp Arg Ala Val Lys 100 105 110Leu Tyr Lys Lys Leu Lys Arg Glu Met Thr Phe His Gly Ala Lys Glu 115 120 125Val Ala Leu Ser Tyr Ser Thr Gly Ala Leu Ala Ser Cys Met Gly Leu 130 135 140Ile Tyr Asn Arg Met Gly Thr Val Thr Thr Glu Val Ala Leu Gly Leu145 150 155 160Val Cys Ala Thr Cys Glu Gln Ile Ala Asp Ala Gln His Arg Ser His 165 170 175Arg Gln Met Ala Thr Thr Thr Asn Pro Leu Ile Arg His Glu Asn Arg 180 185 190Met Val Leu Ala Ser Thr Thr Ala Lys Ala Met Glu Gln Met Ala Gly 195 200 205Ser Ser Glu Gln Ala Ala Glu Ala Met Glu Val Ala Ser Gln Ala Arg 210 215 220Gln Met Val Gln Ala Met Arg Thr Ile Gly Thr His Pro Ser Ser Ser225 230 235 240Ala Gly Leu Lys Asp Asp Leu Ile Glu Asn Leu Gln Ala Tyr Gln Lys 245 250 255Arg Met Gly Val Gln Met Gln Arg Phe Lys 260 265 15 801 DNA Artificial Sequence PADRE-HBV-s construct encoding fusion of pan DR epitope sequence to amino-terminus of hepatitis B virus surface antigen gene 15gctagcgccg ccacc atg gcc aag ttc gtg gct gcc tgg acc ctg aag gct 51 Met Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala 1 5 10gcc gct ctc gag att ggg gga ccc tgc ctg aac gcc gag aac atc aca 99Ala Ala Leu Glu Ile Gly Gly Pro Cys Leu Asn Ala Glu Asn Ile Thr 15 20 25tca gga ttc cta gga ccc ctt ctc gtg tta cag gcg ggg ttt ttc ttg 147Ser Gly Phe Leu Gly Pro Leu Leu Val Leu Gln Ala Gly Phe Phe Leu 30 35 40ttg aca aga atc ctc aca ata ccg cag agt cta gac tcg tgg tgg act 195Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser Leu Asp Ser Trp Trp Thr 45 50 55 60tct ctc aat ttt cta ggg gga act acc gtg tgt ctt ggc caa aat tcg 243Ser Leu Asn Phe Leu Gly Gly Thr Thr Val Cys Leu Gly Gln Asn Ser 65 70 75cag tcc cca acc tcc aat cac tca cca acc tct tgt cct cca act tgt 291Gln Ser Pro Thr Ser Asn His Ser Pro Thr Ser Cys Pro Pro Thr Cys 80 85 90cct ggt tat cgc tgg atg tgt ctg cgg cgt ttt atc atc ttc ctc ttc 339Pro Gly Tyr Arg Trp Met Cys Leu Arg Arg Phe Ile Ile Phe Leu Phe 95 100 105atc ctg ctg cta tgc ctc atc ttc ttg ttg gtt ctt ctg gac tat caa 387Ile Leu Leu Leu Cys Leu Ile Phe Leu Leu Val Leu Leu Asp Tyr Gln 110 115 120ggt atg ttg ccc gtt tgt cct cta att cca gga tcc tca aca acc agc 435Gly Met Leu Pro Val Cys Pro Leu Ile Pro Gly Ser Ser Thr Thr Ser125 130 135 140acg gga cca tgc cgg acc tgc atg act act gct caa gga acc tct atg 483Thr Gly Pro Cys Arg Thr Cys Met Thr Thr Ala Gln Gly Thr Ser Met 145 150 155tat ccc tcc tgt tgc tgt acc aaa cct tcg gac gga aat tgc acc tgt 531Tyr Pro Ser Cys Cys Cys Thr Lys Pro Ser Asp Gly Asn Cys Thr Cys 160 165 170att ccc atc cca tca tcc tgg gct ttc gga aaa ttc cta tgg gag tgg 579Ile Pro Ile Pro Ser Ser Trp Ala Phe Gly Lys Phe Leu Trp Glu Trp 175 180 185gcc tca gcc cgt ttc tcc tgg ctc agt tta cta gtg cca ttt gtt cag 627Ala Ser Ala Arg Phe Ser Trp Leu Ser Leu Leu Val Pro Phe Val Gln 190 195 200tgg ttc gta ggg ctt tcc ccc act gtt tgg ctt tca gtt ata tgg atg 675Trp Phe Val Gly Leu Ser Pro Thr Val Trp Leu Ser Val Ile Trp Met205 210 215 220atg tgg tat tgg ggg cca agt ctg tac agc atc ttg agt ccc ttt tta 723Met Trp Tyr Trp Gly Pro Ser Leu Tyr Ser Ile Leu Ser Pro Phe Leu 225 230 235ccg ctg tta cca att ttc ttt tgt ctt tgg gta tac att taaaccctaa 772Pro Leu Leu Pro Ile Phe Phe Cys Leu Trp Val Tyr Ile 240 245caaaacaaag agatggggtt actctctaa 801 16 249 PRT Artificial Sequence PADRE-HBV-s 16Met Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Leu Glu 1 5 10 15Ile Gly Gly Pro Cys Leu Asn Ala Glu Asn Ile Thr Ser Gly Phe Leu 20 25 30Gly Pro Leu Leu Val Leu Gln Ala Gly Phe Phe Leu Leu Thr Arg Ile 35 40 45Leu Thr Ile Pro Gln Ser Leu Asp Ser Trp Trp Thr Ser Leu Asn Phe 50 55 60Leu Gly Gly Thr Thr Val Cys Leu Gly Gln Asn Ser Gln Ser Pro Thr65 70 75 80Ser Asn His Ser Pro Thr Ser Cys Pro Pro Thr Cys Pro Gly Tyr Arg 85 90 95Trp Met Cys Leu Arg Arg Phe Ile Ile Phe Leu Phe Ile Leu Leu Leu 100 105 110Cys Leu Ile Phe Leu Leu Val Leu Leu Asp Tyr Gln Gly Met Leu Pro 115 120 125Val Cys Pro Leu Ile Pro Gly Ser Ser Thr Thr Ser Thr Gly Pro Cys 130 135 140Arg Thr Cys Met Thr Thr Ala Gln Gly Thr Ser Met Tyr Pro Ser Cys145 150 155 160Cys Cys Thr Lys Pro Ser Asp Gly Asn Cys Thr Cys Ile Pro Ile Pro 165 170 175Ser Ser Trp Ala Phe Gly Lys Phe Leu Trp Glu Trp Ala Ser Ala Arg 180 185 190Phe Ser Trp Leu Ser Leu Leu Val Pro Phe Val Gln Trp Phe Val Gly 195 200 205Leu Ser Pro Thr Val Trp Leu Ser Val Ile Trp Met Met Trp Tyr Trp 210 215 220Gly Pro Ser Leu Tyr Ser Ile Leu Ser Pro Phe Leu Pro Leu Leu Pro225 230 235 240Ile Phe Phe Cys Leu Trp Val Tyr Ile 245 17 516 DNA Artificial Sequence Ig-alphaTh construct encoding fusion of the signal sequence of Ig-alpha protein fused to multiple MHC class II epitopes and the transmembrane and cytoplasmic domains of the Ig-alpha protein 17gctagcgccg ccacc atg cca ggg ggt cta gaa gcc ctc aga gcc ctg cct 51 Met Pro Gly Gly Leu Glu Ala Leu Arg Ala Leu Pro 1 5 10ctc ctc ctc ttc ttg tca tac gcc tgt ttg ggt ccc gga tgc cag gcc 99Leu Leu Leu Phe Leu Ser Tyr Ala Cys Leu Gly Pro Gly Cys Gln Ala 15 20 25atc agc cag gct gtg cac gcc gct cac gcc gaa atc aac gaa gct gga 147Ile Ser Gln Ala Val His Ala Ala His Ala Glu Ile Asn Glu Ala Gly 30 35 40aga acc cct cca gct tat cgc cct cca aac gct cct atc ctg ttc ttt 195Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala Pro Ile Leu Phe Phe 45 50 55 60ctg ctg acc aga atc ctg aca atc ccc cag tcc ctg gac gcc aag ttc 243Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser Leu Asp Ala Lys Phe 65 70 75gtg gct gcc tgg acc ctg aag gct gcc gct ggg atc atc ttg ctg ttc 291Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Gly Ile Ile Leu Leu Phe 80 85 90tgt gca gtg gtg cca ggg acg ctg ctg cta ttc agg aaa cgg tgg caa 339Cys Ala Val Val Pro Gly Thr Leu Leu Leu Phe Arg Lys Arg Trp Gln 95 100 105aat gag aag ttt ggg gtg gac atg cca gat gac tat gaa gat gaa aat 387Asn Glu Lys Phe Gly Val Asp Met Pro Asp Asp Tyr Glu Asp Glu Asn 110 115 120ctc tat gag ggc ctg aac ctt gat gac tgt tct atg tat gag gac atc 435Leu Tyr Glu Gly Leu Asn Leu Asp Asp Cys Ser Met Tyr Glu Asp Ile125 130 135 140tcc agg gga ctc cag ggc acc tac cag gat gtg ggc aac ctc cac att 483Ser Arg Gly Leu Gln Gly Thr Tyr Gln Asp Val Gly Asn Leu His Ile 145 150 155gga gat gcc cag ctg gaa aag cca tgaggtacc 516Gly Asp Ala Gln Leu Glu Lys Pro 160 18 164 PRT Artificial Sequence Ig-alphaTh 18Met Pro Gly Gly Leu Glu Ala Leu Arg Ala Leu Pro Leu Leu Leu Phe 1 5 10 15Leu Ser Tyr Ala Cys Leu Gly Pro Gly Cys Gln Ala Ile Ser Gln Ala 20 25 30Val His Ala Ala His Ala Glu Ile Asn Glu Ala Gly Arg Thr Pro Pro 35 40 45Ala Tyr Arg Pro Pro Asn Ala Pro Ile Leu Phe Phe Leu Leu Thr Arg 50 55 60Ile Leu Thr Ile Pro Gln Ser Leu Asp Ala Lys Phe Val Ala Ala Trp65 70 75 80Thr Leu Lys Ala Ala Ala Gly Ile Ile Leu Leu Phe Cys Ala Val Val 85 90 95Pro Gly Thr Leu Leu Leu Phe Arg Lys Arg Trp Gln Asn Glu Lys Phe 100 105 110Gly Val Asp Met Pro Asp Asp Tyr Glu Asp Glu Asn Leu Tyr Glu Gly 115 120 125Leu Asn Leu Asp Asp Cys Ser Met Tyr Glu Asp Ile Ser Arg Gly Leu 130 135 140Gln Gly Thr Tyr Gln Asp Val Gly Asn Leu His Ile Gly Asp Ala Gln145 150 155 160Leu Glu Lys Pro 19 480 DNA Artificial Sequence Ig-betaTh construct encoding fusion of the signal sequence of Ig-beta protein fused to multiple MHC class II epitopes and the transmembrane and cytoplasmic domains of the Ig-beta protein 19gctagcgccg ccacc atg gcc aca ctg gtg ctg tct tcc atg ccc tgc cac 51 Met Ala Thr Leu Val Leu Ser Ser Met Pro Cys His 1 5 10tgg ctg ttg ttc ctg ctg ctg ctc ttc tca ggt gag ccg atc agc cag 99Trp Leu Leu Phe Leu Leu Leu Leu Phe Ser Gly Glu Pro Ile Ser Gln 15 20 25gct gtg cac gcc gct cac gcc gaa atc aac gaa gct gga aga acc cct 147Ala Val His Ala Ala His Ala Glu Ile Asn Glu Ala Gly Arg Thr Pro 30 35 40cca gct tat cgc cct cca aac gct cct atc ctg ttc ttt ctg ctg acc 195Pro Ala Tyr Arg Pro Pro Asn Ala Pro Ile Leu Phe Phe Leu Leu Thr 45 50 55 60aga atc ctg aca atc ccc cag tcc ctg gac gcc aag ttc gtg gct gcc 243Arg Ile Leu Thr Ile Pro Gln Ser Leu Asp Ala Lys Phe Val Ala Ala 65 70 75tgg acc ctg aag gct gcc gct att atc ttg atc cag acc ctc ctc atc 291Trp Thr Leu Lys Ala Ala Ala Ile Ile Leu Ile Gln Thr Leu Leu Ile 80 85 90atc ctc ttc atc att gtg ccc atc ttc ctg cta ctt gac aag gat gac 339Ile Leu Phe Ile Ile Val Pro Ile Phe Leu Leu Leu Asp Lys Asp Asp 95 100 105ggc aag gct ggg atg gag gaa gat cac acc tat gag ggc ttg aac att 387Gly Lys Ala Gly Met Glu Glu Asp His Thr Tyr Glu Gly Leu Asn Ile 110 115 120gac cag aca gcc acc tat gaa gac ata gtg act ctt cgg aca ggg gag 435Asp Gln Thr Ala Thr Tyr Glu Asp Ile Val Thr Leu Arg Thr Gly Glu125 130 135 140gta aag tgg tcg gta gga gag cat cca ggc cag gaa tgaggtacc 480Val Lys Trp Ser Val Gly Glu His Pro Gly Gln Glu 145 150 20 152 PRT Artificial Sequence Ig-betaTh 20Met Ala Thr Leu Val Leu Ser Ser Met Pro Cys His Trp Leu Leu Phe 1 5 10 15Leu Leu Leu Leu Phe Ser Gly Glu Pro Ile Ser Gln Ala Val His Ala 20 25 30Ala His Ala Glu Ile Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr Arg 35 40 45Pro Pro Asn Ala Pro Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu Thr 50 55 60Ile Pro Gln Ser Leu Asp Ala Lys Phe Val Ala Ala Trp Thr Leu Lys65 70 75 80Ala Ala Ala Ile Ile Leu Ile Gln Thr Leu Leu Ile Ile Leu Phe Ile 85 90 95Ile Val Pro Ile Phe Leu Leu Leu Asp Lys Asp Asp Gly Lys Ala Gly 100 105 110Met Glu Glu Asp His Thr Tyr Glu Gly Leu Asn Ile Asp Gln Thr Ala 115 120 125Thr Tyr Glu Asp Ile Val Thr Leu Arg Thr Gly Glu Val Lys Trp Ser 130 135 140Val Gly Glu His Pro Gly Gln Glu145 150 21 264 DNA Artificial Sequence SigTh construct encoding fusion of the signal sequence of kappa immunoglobulin fused to multiple MHC class II epitopes 21gctagcgccg ccacc atg gga atg cag gtg cag atc cag agc ctg ttt ctg 51 Met Gly Met Gln Val Gln Ile Gln Ser Leu Phe Leu 1 5 10ctc ctc ctg tgg gtg ccc ggg tcc cga gga atc agc cag gct gtg cac 99Leu Leu Leu Trp Val Pro Gly Ser Arg Gly Ile Ser Gln Ala Val His 15 20 25gcc gct cac gcc gaa atc aac gaa gct gga aga acc cct cca gct tat 147Ala Ala His Ala Glu Ile Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr 30 35 40cgc cct cca aac gct cct atc ctg ttc ttt ctg ctg acc aga atc ctg 195Arg Pro Pro Asn Ala Pro Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu 45 50 55 60aca atc ccc cag tcc ctg gac gcc aag ttc gtg gct gcc tgg acc ctg 243Thr Ile Pro Gln Ser Leu Asp Ala Lys Phe Val Ala Ala Trp Thr Leu 65 70 75aag gct gcc gct tgaggtacc 264Lys Ala Ala Ala 80 22 80 PRT Artificial Sequence SigTh 22Met Gly Met Gln Val Gln Ile Gln Ser Leu Phe Leu Leu Leu Leu Trp 1 5 10 15Val Pro Gly Ser Arg Gly Ile Ser Gln Ala Val His Ala Ala His Ala 20 25 30Glu Ile Asn Glu Ala Gly Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn 35 40 45Ala Pro Ile Leu Phe Phe Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln 50 55 60Ser Leu Asp Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala65 70 75 80 23 723 DNA Homo sapiens CDS (8)...(706) human HLA-DR invariant chain (Ii) protein 23ttcccag atg cac agg agg aga agc agg agc tgt cgg gaa gat cag aag 49 Met His Arg Arg Arg Ser Arg Ser Cys Arg Glu Asp Gln Lys 1 5 10cca gtc atg gat gac cag cgc gac ctt atc tcc aac aat gag caa ctg 97Pro Val Met Asp Asp Gln Arg Asp Leu Ile Ser Asn Asn Glu Gln Leu 15 20 25 30ccc atg ctg ggc cgg cgc cct ggg gcc ccg gag agc aag tgc agc cgc 145Pro Met Leu Gly Arg Arg Pro Gly Ala Pro Glu Ser Lys Cys Ser Arg 35 40 45gga gcc ctg tac aca ggc ttt tcc atc ctg gtg act ctg ctc ctc gct 193Gly Ala Leu Tyr Thr Gly Phe Ser Ile Leu Val Thr Leu Leu Leu Ala 50 55 60ggc cag gcc acc acc gcc tac ttc ctg tac cag cag cag ggc cgg ctg 241Gly Gln Ala Thr Thr Ala Tyr Phe Leu Tyr Gln Gln Gln Gly Arg Leu 65 70 75gac aaa ctg aca gtc acc tcc cag aac ctg cag ctg gag aac ctg cgc 289Asp Lys Leu Thr Val Thr Ser Gln Asn Leu Gln Leu Glu Asn Leu Arg 80 85 90atg aag ctt ccc aag cct ccc aag cct gtg agc aag atg cgc atg gcc 337Met Lys Leu Pro Lys Pro Pro Lys Pro Val Ser Lys Met Arg Met Ala 95 100 105 110acc ccg ctg ctg atg cag gcg ctg ccc atg gga gcc ctg ccc cag ggg 385Thr Pro Leu Leu Met Gln Ala Leu Pro Met Gly Ala Leu Pro Gln Gly 115 120 125ccc atg cag aat gcc acc aag tat ggc aac atg aca gag gac cat gtg 433Pro Met Gln Asn Ala Thr Lys Tyr Gly Asn Met Thr Glu Asp His Val 130 135 140atg cac ctg ctc cag aat gct gac ccc ctg aag gtg tac ccg cca ctg 481Met His Leu Leu Gln Asn Ala Asp Pro Leu Lys Val Tyr Pro Pro Leu 145 150 155aag ggg agc ttc ccg gag aac ctg aga cac ctt aag aac acc atg gag 529Lys Gly Ser Phe Pro Glu Asn Leu Arg His Leu Lys Asn Thr Met Glu 160 165 170acc ata gac tgg aag gtc ttt gag agc tgg atg cac cat tgg ctc ctg 577Thr Ile Asp Trp Lys Val Phe Glu Ser Trp Met His His Trp Leu Leu175 180 185 190ttt gaa atg agc agg cac tcc ttg gag caa aag ccc act gac gct cca 625Phe Glu Met Ser Arg His Ser Leu Glu Gln Lys Pro Thr Asp Ala Pro 195 200 205ccg aaa gag tca ctg gaa ctg gag gac ccg tct tct ggg ctg ggt gtg 673Pro Lys Glu Ser Leu Glu Leu Glu Asp Pro Ser Ser Gly Leu Gly Val 210 215 220acc aag cag gat ctg ggc cca gtc ccc atg tgagagcagc agaggcggtc 723Thr Lys Gln Asp Leu Gly Pro Val Pro Met 225 230 24 232 PRT Homo sapiens human HLA-DR invariant chain (Ii) protein 24Met His Arg Arg Arg Ser Arg Ser Cys Arg Glu Asp Gln Lys Pro Val 1 5 10 15Met Asp Asp Gln Arg Asp Leu Ile Ser Asn Asn Glu Gln Leu Pro Met 20 25 30Leu Gly Arg Arg Pro Gly Ala Pro Glu Ser Lys Cys Ser Arg Gly Ala 35 40 45Leu Tyr Thr Gly Phe Ser Ile Leu Val Thr Leu Leu Leu Ala Gly Gln 50 55 60Ala Thr Thr Ala Tyr Phe Leu Tyr Gln Gln Gln Gly Arg Leu Asp Lys65 70 75 80Leu Thr Val Thr Ser Gln Asn Leu Gln Leu Glu Asn Leu Arg Met Lys 85 90 95Leu Pro Lys Pro Pro Lys Pro Val Ser Lys Met Arg Met Ala Thr Pro 100 105 110Leu Leu Met Gln Ala Leu Pro Met Gly Ala Leu Pro Gln Gly Pro Met 115 120 125Gln Asn Ala Thr Lys Tyr Gly Asn Met Thr Glu Asp His Val Met His 130 135 140Leu Leu Gln Asn Ala Asp Pro Leu Lys Val Tyr Pro Pro Leu Lys Gly145 150 155 160Ser Phe Pro Glu Asn Leu Arg His Leu Lys Asn Thr Met Glu Thr Ile 165 170 175Asp Trp Lys Val Phe Glu Ser Trp Met His His Trp Leu Leu Phe Glu 180 185 190Met Ser Arg His Ser Leu Glu Gln Lys Pro Thr Asp Ala Pro Pro Lys 195 200 205Glu Ser Leu Glu Leu Glu Asp Pro Ser Ser Gly Leu Gly Val Thr Lys 210 215 220Gln Asp Leu Gly Pro Val Pro Met225 230 25 1298 DNA Homo sapiens CDS (11)...(1261) human lysosomal membrane glycoprotein-1 (LAMP-1) 25ccgcctcggc atg gcg ccc cgc agc gcc cgg cga ccc ctg ctg ctg cta 49 Met Ala Pro Arg Ser Ala Arg Arg Pro Leu Leu Leu Leu 1 5 10ctg cct gtt gct gct gct cgg cct cat gca ttg tcg tca gca gcc atg 97Leu Pro Val Ala Ala Ala Arg Pro His Ala Leu Ser Ser Ala Ala Met 15 20 25ttt atg gtg aaa aat ggc aac ggg acc gcg tgc ata atg gcc aac ttc 145Phe Met Val Lys Asn Gly Asn Gly Thr Ala Cys Ile Met Ala Asn Phe 30 35 40 45tct gct gcc ttc tca gtg aac tac gac acc aag agt ggc ccc aag aac 193Ser Ala Ala Phe Ser Val Asn Tyr Asp Thr Lys Ser Gly Pro Lys Asn 50 55 60atg acc ttt gac ctg cca tca gat gcc aca gtg gtg ctc aac cgc agc 241Met Thr Phe Asp Leu Pro Ser Asp Ala Thr Val Val Leu Asn Arg Ser 65 70 75tcc tgt gga aaa gag aac act tct gac ccc agt ctc gtg att gct ttt 289Ser Cys Gly Lys Glu Asn Thr Ser Asp Pro Ser Leu Val Ile Ala Phe 80 85 90gga aga gga cat aca ctc act ctc aat ttc acg aga aat gca aca cgt 337Gly Arg Gly His Thr Leu Thr Leu Asn Phe Thr Arg Asn Ala Thr Arg 95 100 105tac agc gtt cag ctc atg agt ttt gtt tat aac ttg tca gac aca cac 385Tyr Ser Val Gln Leu Met Ser Phe Val Tyr Asn Leu Ser Asp Thr His110 115 120 125ctt ttc ccc aat gcg agc tcc aaa gaa atc aag act gtg gaa tct ata 433Leu Phe Pro Asn Ala Ser Ser Lys Glu Ile Lys Thr Val Glu Ser Ile 130 135 140act gac atc agg gca gat ata gat aaa aaa tac aga tgt gtt agt ggc 481Thr Asp Ile Arg Ala Asp Ile Asp Lys Lys Tyr Arg Cys Val Ser Gly 145 150 155acc cag gtc cac atg aac aac gtg acc gta acg ctc cat gat gcc acc 529Thr Gln Val His Met Asn Asn Val Thr Val Thr Leu His Asp Ala Thr 160 165 170atc cag gcg tac ctt tcc aac agc agc ttc agc agg gga gag aca cgc 577Ile Gln Ala Tyr Leu Ser Asn Ser Ser Phe Ser Arg Gly Glu Thr Arg 175 180 185tgt gaa caa gac agg cct tcc cca acc aca gcg ccc cct gcg cca ccc 625Cys Glu Gln Asp Arg Pro Ser Pro Thr Thr Ala Pro Pro Ala Pro Pro190 195 200 205agc ccc tcg ccc tca ccc gtg ccc aag agc ccc tct gtg gac aag tac 673Ser Pro Ser Pro Ser Pro Val Pro Lys Ser Pro Ser Val Asp Lys Tyr 210 215 220aac gtg agc ggc acc aac ggg acc tgc ctg ctg gcc agc atg ggg ctg 721Asn Val Ser Gly Thr Asn Gly Thr Cys Leu Leu Ala Ser Met Gly Leu 225 230 235cag ctg aac ctc acc tat gag agg aag gac aac acg acg gtg aca agg 769Gln Leu Asn Leu Thr Tyr Glu Arg Lys Asp Asn Thr Thr Val Thr Arg 240 245 250ctt ctc aac atc aac ccc aac aag acc tcg gcc agc ggg agc tgc ggc 817Leu Leu Asn Ile Asn Pro Asn Lys Thr Ser Ala Ser Gly Ser Cys Gly 255 260 265gcc cac ctg gtg act ctg gag ctg cac agc gag ggc acc acc gtc ctg 865Ala His Leu Val Thr Leu Glu Leu His Ser Glu Gly Thr Thr Val Leu270 275 280 285ctc ttc cag ttc ggg atg aat gca agt tct agc cgg ttt ttc cta caa 913Leu Phe Gln Phe Gly Met Asn Ala Ser Ser Ser Arg Phe Phe Leu Gln 290 295 300gga atc cag ttg aat aca att ctt cct gac gcc aga gac cct gcc ttt 961Gly Ile Gln Leu Asn Thr Ile Leu Pro Asp Ala Arg Asp Pro Ala Phe 305 310 315aaa gct gcc aac ggc tcc ctg cga gcg ctg cag gcc aca gtc ggc aat 1009Lys Ala Ala Asn Gly Ser Leu Arg Ala Leu Gln Ala Thr Val Gly Asn 320 325 330tcc tac aag tgc aac gcg gag gag cac gtc cgt gtc acg aag gcg ttt 1057Ser Tyr Lys Cys Asn Ala Glu Glu His Val Arg Val Thr Lys Ala Phe 335 340 345tca gtc aat ata ttc aaa gtg tgg gtc cag gct ttc aag gtg gaa ggt 1105Ser Val Asn Ile Phe Lys Val Trp Val Gln Ala Phe Lys Val Glu Gly350 355 360 365ggc cag ttt ggc tct gtg gag gag tgt ctg ctg gac gag aac agc acg 1153Gly Gln Phe Gly Ser Val Glu Glu Cys Leu Leu Asp Glu Asn Ser Thr 370 375 380ctg atc ccc atc gct gtg ggt ggt gcc ctg gcg ggg ctg gtc ctc atc 1201Leu Ile Pro Ile Ala Val Gly Gly Ala Leu Ala Gly Leu Val Leu Ile 385 390 395gtc ctc atc gcc tac ctc gtc ggc agg aag agg agt cac gca ggc tac 1249Val Leu Ile Ala Tyr Leu Val Gly Arg Lys Arg Ser His Ala Gly Tyr 400 405 410cag act atc tagcctggtg cacgcaggca cagcagctgc aggggcctct 1298Gln Thr Ile 415 26 416 PRT Homo sapiens human lysosomal membrane glycoprotein-1 (LAMP-1) 26Met Ala Pro Arg Ser Ala Arg Arg Pro Leu Leu Leu Leu Leu Pro Val 1 5 10 15Ala Ala Ala Arg Pro His Ala Leu Ser Ser Ala Ala Met Phe Met Val 20 25 30Lys Asn Gly Asn Gly Thr Ala Cys Ile Met Ala Asn Phe Ser Ala Ala 35 40 45Phe Ser Val Asn Tyr Asp Thr Lys Ser Gly Pro Lys Asn Met Thr Phe 50 55 60Asp Leu Pro Ser Asp Ala Thr Val Val Leu Asn Arg Ser Ser Cys Gly65 70 75 80Lys Glu Asn Thr Ser Asp Pro Ser Leu Val Ile Ala Phe Gly Arg Gly 85 90 95His Thr Leu Thr Leu Asn Phe Thr Arg Asn Ala Thr Arg Tyr Ser Val 100 105 110Gln Leu Met Ser Phe Val Tyr Asn Leu Ser Asp Thr His Leu Phe Pro 115 120 125Asn Ala Ser Ser Lys Glu Ile Lys Thr Val Glu Ser Ile Thr Asp Ile 130 135 140Arg Ala Asp Ile Asp Lys Lys Tyr Arg Cys Val Ser Gly Thr Gln Val145 150 155 160His Met Asn Asn Val Thr Val Thr Leu His Asp Ala Thr Ile Gln Ala 165 170 175Tyr Leu Ser Asn Ser Ser Phe Ser Arg Gly Glu Thr Arg Cys Glu Gln 180 185 190Asp Arg Pro Ser Pro Thr Thr Ala Pro Pro Ala Pro Pro Ser Pro Ser 195 200 205Pro Ser Pro Val Pro Lys Ser Pro Ser Val Asp Lys Tyr Asn Val Ser 210 215 220Gly Thr Asn Gly Thr Cys Leu Leu Ala Ser Met Gly Leu Gln Leu Asn225 230 235 240Leu Thr Tyr Glu Arg Lys Asp Asn Thr Thr Val Thr Arg Leu Leu Asn 245 250 255Ile Asn Pro Asn Lys Thr Ser Ala Ser Gly Ser Cys Gly Ala His Leu 260 265 270Val Thr Leu Glu Leu His Ser Glu Gly Thr Thr Val Leu Leu Phe Gln 275 280 285Phe Gly Met Asn Ala Ser Ser Ser Arg Phe Phe Leu Gln Gly Ile Gln 290 295 300Leu Asn Thr Ile Leu Pro Asp Ala Arg Asp Pro Ala Phe Lys Ala Ala305 310 315 320Asn Gly Ser Leu Arg Ala Leu Gln Ala Thr Val Gly Asn Ser Tyr Lys 325 330 335Cys Asn Ala Glu Glu His Val Arg Val Thr Lys Ala Phe Ser Val Asn 340 345 350Ile Phe Lys Val Trp Val Gln Ala Phe Lys Val Glu Gly Gly Gln Phe 355 360 365Gly Ser Val Glu Glu Cys Leu Leu Asp Glu Asn Ser Thr Leu Ile Pro 370 375 380Ile Ala Val Gly Gly Ala Leu Ala Gly Leu Val Leu Ile Val Leu Ile385 390 395 400Ala Tyr Leu Val Gly Arg Lys Arg Ser His Ala Gly Tyr Gln Thr Ile 405 410 415 27 792 DNA Homo sapiens CDS (1)...(792) human HLA-DMB 27atg atc aca ttc ctg ccg ctg ctg ctg ggg ctc agc ctg ggc tgc aca 48Met Ile Thr Phe Leu Pro Leu Leu Leu Gly Leu Ser Leu Gly Cys Thr 1 5 10 15gga gca ggt ggc ttc gtg gcc cat gtg gaa agc acc tgt ctg ttg gat 96Gly Ala Gly Gly Phe Val Ala His Val Glu Ser Thr Cys Leu Leu Asp 20 25 30gat gct ggg act cca aag gat ttc aca tac tgc atc tcc ttc aac aag 144Asp Ala Gly Thr Pro Lys Asp Phe Thr Tyr Cys Ile Ser Phe Asn Lys 35 40 45gat ctg ctg acc tgc tgg gat cca gag gag aat aag atg gcc cct tgc 192Asp Leu Leu Thr Cys Trp Asp Pro Glu Glu Asn Lys Met Ala Pro Cys 50 55 60gaa ttt ggg gtg ctg aat agc ttg gcg aat gtc ctc tca cag cac ctc 240Glu Phe Gly Val Leu Asn Ser Leu Ala Asn Val Leu Ser Gln His Leu 65 70 75 80aac caa aaa gac acc ctg atg cag cgc ttg cgc aat ggg ctt cag aat 288Asn Gln Lys Asp Thr Leu Met Gln Arg Leu Arg Asn Gly Leu Gln Asn 85 90 95tgt gcc aca cac acc cag ccc ttc tgg gga tca ctg acc aac agg aca 336Cys Ala Thr His Thr Gln Pro Phe Trp Gly Ser Leu Thr Asn Arg Thr 100 105 110cgg cca cca tct gtg caa gta gcc aaa acc act cct ttt aac acg agg 384Arg Pro Pro Ser Val Gln Val Ala Lys Thr Thr Pro Phe Asn Thr Arg 115 120 125gag cct gtg atg ctg gcc tgc tat gtg tgg ggc ttc tat cca gca gaa 432Glu Pro Val Met Leu Ala Cys Tyr Val Trp Gly Phe Tyr Pro Ala Glu 130 135 140gtg act atc acg tgg agg aag aac ggg aag ctt gtc atg cct cac agc 480Val Thr Ile Thr Trp Arg Lys Asn Gly Lys Leu Val Met Pro His Ser145 150 155 160agt gcg cac aag act gcc cag ccc aat gga gac tgg aca tac cag acc 528Ser Ala His Lys Thr Ala Gln Pro Asn Gly Asp Trp Thr Tyr Gln Thr 165 170 175ctc tcc cat tta gcc tta acc ccc tct tac ggg gac act tac acc tgt 576Leu Ser His Leu Ala Leu Thr Pro Ser Tyr Gly Asp Thr Tyr Thr Cys 180 185 190gtg gta gag cac att ggg gct cct gag ccc atc ctt cgg gac tgg aca 624Val Val Glu His Ile Gly Ala Pro Glu Pro Ile Leu Arg Asp Trp Thr 195 200 205cct ggg ctg tcc ccc atg cag acc ctg aag gtt tct gtg tct gca gtg 672Pro Gly Leu Ser Pro Met Gln Thr Leu Lys Val Ser Val Ser Ala Val 210 215 220act ctg ggc ctg ggc ctc atc atc ttc tct ctt ggt gtg atc agc tgg 720Thr Leu Gly Leu Gly Leu Ile Ile Phe Ser Leu Gly Val Ile Ser Trp225 230 235 240cgg aga gct ggc cac tct agt tac act cct ctt cct ggg tcc aat tat 768Arg Arg Ala Gly His Ser Ser Tyr Thr Pro Leu Pro Gly Ser Asn Tyr 245 250 255tca gaa gga tgg cac att tcc tag 792Ser Glu Gly Trp His Ile Ser 260 28 263 PRT Homo sapiens human HLA-DMB 28Met Ile Thr Phe Leu Pro Leu Leu Leu Gly Leu Ser Leu Gly Cys Thr 1 5 10 15Gly Ala Gly Gly Phe Val Ala His Val Glu Ser Thr Cys Leu Leu Asp 20 25 30Asp Ala Gly Thr Pro Lys Asp Phe Thr Tyr Cys Ile Ser Phe Asn Lys 35 40 45Asp Leu Leu Thr Cys Trp Asp Pro Glu Glu Asn Lys Met Ala Pro Cys 50 55 60Glu Phe Gly Val Leu Asn Ser Leu Ala Asn Val Leu Ser Gln His Leu65 70 75 80Asn Gln Lys Asp Thr Leu Met Gln Arg Leu Arg Asn Gly Leu Gln Asn 85 90 95Cys Ala Thr His Thr Gln Pro Phe Trp Gly Ser Leu Thr Asn Arg Thr 100 105 110Arg Pro Pro Ser Val Gln Val Ala Lys Thr Thr Pro Phe Asn Thr Arg 115 120 125Glu Pro Val Met Leu Ala Cys Tyr Val Trp Gly Phe Tyr Pro Ala Glu 130 135 140Val Thr Ile Thr Trp Arg Lys Asn Gly Lys Leu Val Met Pro His Ser145 150 155 160Ser Ala His Lys Thr Ala Gln Pro Asn Gly Asp Trp Thr Tyr Gln Thr 165 170 175Leu Ser His Leu Ala Leu Thr Pro Ser Tyr Gly Asp Thr Tyr Thr Cys 180 185 190Val Val Glu His Ile Gly Ala Pro Glu Pro Ile Leu Arg Asp Trp Thr 195 200 205Pro Gly Leu Ser Pro Met Gln Thr Leu Lys Val Ser Val Ser Ala Val 210 215 220Thr Leu Gly Leu Gly Leu Ile Ile Phe Ser Leu Gly Val Ile Ser Trp225 230 235 240Arg Arg Ala Gly His Ser Ser Tyr Thr Pro Leu Pro Gly Ser Asn Tyr 245 250 255Ser Glu Gly Trp His Ile Ser 260 29 822 DNA Homo sapiens CDS (1)...(822) human HLA-DO beta 29atg ggt tct ggg tgg gtc ccc tgg gtg gtg gct ctg cta gtg aat ctg 48Met Gly Ser Gly Trp Val Pro Trp Val Val Ala Leu Leu Val Asn Leu 1 5 10 15acc caa ctg gat tcc tcc atg act caa ggc aca gac tct cca gaa gat 96Thr Gln Leu Asp Ser Ser Met Thr Gln Gly Thr Asp Ser Pro Glu Asp 20 25 30ttt gtg att cag gca aag gct gac tgt tac ttc acc aac ggg aca gaa 144Phe Val Ile Gln Ala Lys Ala Asp Cys Tyr Phe Thr Asn Gly Thr Glu 35 40 45aag gtg cag ttt gtg gtc aga ttc atc ttt aac ttg gag gag tat gta 192Lys Val Gln Phe Val Val Arg Phe Ile Phe Asn Leu Glu Glu Tyr Val 50 55 60cgt ttc gac agt gat gtg ggg atg ttt gtg gca ttg acc aag ctg ggg 240Arg Phe Asp Ser Asp Val Gly Met Phe Val Ala Leu Thr Lys Leu Gly 65 70 75 80cag cca gat gct gag cag tgg aac agc cgg ctg gat ctc ttg gag agg 288Gln Pro Asp Ala Glu Gln Trp Asn Ser Arg Leu Asp Leu Leu Glu Arg 85 90 95agc aga cag gcc gtg gat ggg gtc tgt aga cac aac tac agg ctg ggc 336Ser Arg Gln Ala Val Asp Gly Val Cys Arg His Asn Tyr Arg Leu Gly 100 105 110gca ccc ttc act gtg ggg aga aaa gtg caa cca gag gtg aca gtg tac 384Ala Pro Phe Thr Val Gly Arg Lys Val Gln Pro Glu Val Thr Val Tyr 115 120 125cca gag agg acc cca ctc ctg cac cag cat aat ctg ctg cac tgc tct 432Pro Glu Arg Thr Pro Leu Leu His Gln His Asn Leu Leu His Cys Ser 130 135 140gtg aca ggc ttc tat cca ggg gat atc aag atc aag tgg ttc ctg aat 480Val Thr Gly Phe Tyr Pro Gly Asp Ile Lys Ile Lys Trp Phe Leu Asn145 150 155 160ggg cag gag gag aga gct ggg gtc atg tcc act ggc cct atc agg aat 528Gly Gln Glu Glu Arg Ala Gly Val Met Ser Thr Gly Pro Ile Arg Asn 165 170 175gga gac tgg acc ttt cag act gtg gtg atg cta gaa atg act cct gaa 576Gly Asp Trp Thr Phe Gln Thr Val Val Met Leu Glu Met Thr Pro Glu 180 185 190ctt gga cat gtc tac acc tgc ctt gtc gat cac tcc agc ctg ctg agc 624Leu Gly His Val Tyr Thr Cys Leu Val Asp His Ser Ser Leu Leu Ser 195 200 205cct gtt tct gtg gag tgg aga gct cag tct gaa tat tct tgg aga aag 672Pro Val Ser Val Glu Trp Arg Ala Gln Ser Glu Tyr Ser Trp Arg Lys 210 215 220atg ctg agt ggc att gca gcc ttc cta ctt ggg cta atc ttc ctt ctg 720Met Leu Ser Gly Ile Ala Ala Phe Leu Leu Gly Leu Ile Phe Leu Leu225 230 235 240gtg gga atc gtc atc cag cta agg gct cag aaa gga tat gtg agg acg 768Val Gly Ile Val Ile Gln Leu Arg Ala Gln Lys Gly Tyr Val Arg Thr 245 250 255cag atg tct ggt aat gag gtc tca aga gct gtt ctg ctc cct cag tca 816Gln Met Ser Gly Asn Glu Val Ser Arg Ala Val Leu Leu Pro Gln Ser 260 265 270tgc taa 822Cys 30 273 PRT Homo sapiens human HLA-DO beta 30Met Gly Ser Gly Trp Val Pro Trp Val Val Ala Leu Leu Val Asn Leu 1 5 10 15Thr Gln Leu Asp Ser Ser Met Thr Gln Gly Thr Asp Ser Pro Glu Asp 20 25 30Phe Val Ile Gln Ala Lys Ala Asp Cys Tyr Phe Thr Asn Gly Thr Glu 35 40 45Lys Val Gln Phe Val Val Arg Phe Ile Phe Asn Leu Glu Glu Tyr Val 50 55 60Arg Phe Asp Ser Asp Val Gly Met Phe Val Ala Leu Thr Lys Leu Gly65 70 75 80Gln Pro Asp Ala Glu Gln Trp Asn Ser Arg Leu Asp Leu Leu Glu Arg 85 90 95Ser Arg Gln Ala Val Asp Gly Val Cys Arg His Asn Tyr Arg Leu Gly 100 105 110Ala Pro Phe Thr Val Gly Arg Lys Val Gln Pro Glu Val Thr Val Tyr 115 120 125Pro Glu Arg Thr Pro Leu Leu His Gln His Asn Leu Leu His Cys Ser 130 135 140Val Thr Gly Phe Tyr Pro Gly Asp Ile Lys Ile Lys Trp Phe Leu Asn145 150 155 160Gly Gln Glu Glu Arg Ala Gly Val Met Ser Thr Gly Pro Ile Arg Asn 165 170 175Gly Asp Trp Thr Phe Gln Thr Val Val Met Leu Glu Met Thr Pro Glu 180 185 190Leu Gly His Val Tyr Thr Cys Leu Val Asp His Ser Ser Leu Leu Ser 195 200 205Pro Val Ser Val Glu Trp Arg Ala Gln Ser Glu Tyr Ser Trp Arg Lys 210 215 220Met Leu Ser Gly Ile Ala Ala Phe Leu Leu Gly Leu Ile Phe Leu Leu225 230 235 240Val Gly Ile Val Ile Gln Leu Arg Ala Gln Lys Gly Tyr Val Arg Thr 245 250 255Gln Met Ser Gly Asn Glu Val Ser Arg Ala Val Leu Leu Pro Gln Ser 260 265 270Cys 31 700 DNA Homo sapiens CDS (1)...(681) human MB-1 Ig-alpha 31atg cct ggg ggt cca gga gtc ctc caa gct ctg cct gcc acc atc ttc 48Met Pro Gly Gly Pro Gly Val Leu Gln Ala Leu Pro Ala Thr Ile Phe 1 5 10 15ctc ctc ttc ctg ctg tct gct gtc tac ctg ggc cct ggg tgc cag gcc 96Leu Leu Phe Leu Leu Ser Ala Val Tyr Leu Gly Pro Gly Cys Gln Ala 20 25 30ctg tgg atg cac aag gtc cca gca tca ttg atg gtg agc ctg ggg gaa 144Leu Trp Met His Lys Val Pro Ala Ser Leu Met Val Ser Leu Gly Glu 35 40 45gac gcc cac ttc caa tgc ccg cac aat agc agc aac aac gcc aac gtc 192Asp Ala His Phe Gln Cys Pro His Asn Ser Ser Asn Asn Ala Asn Val 50 55 60acc tgg tgg cgc gtc ctc cat ggc aac tac acg tgg ccc cct gag ttc 240Thr Trp Trp Arg Val Leu His Gly Asn Tyr Thr Trp Pro Pro Glu Phe 65 70 75 80ttg ggc ccg ggc gag gac ccc aat ggt acg ctg atc atc cag aat gtg 288Leu Gly Pro Gly Glu Asp Pro Asn Gly Thr Leu Ile Ile Gln Asn Val 85 90 95aac aag agc cat ggg ggc ata tac gtg tgc cgg gtc cag gag ggc aac 336Asn Lys Ser His Gly Gly Ile Tyr Val Cys Arg Val Gln Glu Gly Asn 100 105 110gag tca tac cag cag tcc tgc ggc acc tac ctc cgc gtg cgc cag ccg 384Glu Ser Tyr Gln Gln Ser Cys Gly Thr Tyr Leu Arg Val Arg Gln Pro 115 120 125ccc ccc agg ccc ttc ctg gac atg ggg gag ggc acc aag aac cga atc 432Pro Pro Arg Pro Phe Leu Asp Met Gly Glu Gly Thr Lys Asn Arg Ile 130 135 140atc aca gcc gag ggg atc atc ctc ctg ttc tgc gcg gtg gtg cct ggg 480Ile Thr Ala Glu Gly Ile Ile Leu Leu Phe Cys Ala Val Val Pro Gly145 150 155 160acg ctg ctg ctg ttc agg aaa cga tgg cag aac gag aag ctc ggg ttg 528Thr Leu Leu Leu Phe Arg Lys Arg Trp Gln Asn Glu Lys Leu Gly Leu 165 170 175gat gcc ggg gat gaa tat gaa gat gaa aac ctt tat gaa ggc ctg aac 576Asp Ala Gly Asp Glu Tyr Glu Asp Glu Asn Leu Tyr Glu Gly Leu Asn 180 185 190ctg gac gac tgc tcc atg tat gag gac atc tcc cgg ggc ctc cag ggc 624Leu Asp Asp Cys Ser Met Tyr Glu Asp Ile Ser Arg Gly Leu Gln Gly 195 200 205acc tac cag gat gtg ggc agc ctc aac ata gga gat gtc cag ctg gag 672Thr Tyr Gln Asp Val Gly Ser Leu Asn Ile Gly Asp Val Gln Leu Glu 210 215 220aag ccg tgacacccct actcctgcca gg 700Lys Pro225 32 226 PRT Homo sapiens human MB-1 Ig-alpha 32Met Pro Gly Gly Pro Gly Val Leu Gln Ala Leu Pro Ala Thr Ile Phe 1 5 10 15Leu Leu Phe Leu Leu Ser Ala Val Tyr Leu Gly Pro Gly Cys Gln Ala 20 25 30Leu Trp Met His Lys Val Pro Ala Ser Leu Met Val Ser Leu Gly Glu 35 40 45Asp Ala His Phe Gln Cys Pro His Asn Ser Ser Asn Asn Ala Asn Val 50 55 60Thr Trp Trp Arg Val Leu His Gly Asn Tyr Thr Trp Pro Pro Glu Phe65 70 75 80Leu Gly Pro Gly Glu Asp Pro Asn Gly Thr Leu Ile Ile Gln Asn Val 85 90 95Asn Lys Ser His Gly Gly Ile Tyr Val Cys Arg Val Gln Glu Gly Asn 100 105 110Glu Ser Tyr Gln Gln Ser Cys Gly Thr Tyr Leu Arg Val Arg Gln Pro 115 120 125Pro Pro Arg Pro Phe Leu Asp Met Gly Glu Gly Thr Lys Asn Arg Ile 130 135 140Ile Thr Ala Glu Gly Ile Ile Leu Leu Phe Cys Ala Val Val Pro Gly145 150 155 160Thr Leu Leu Leu Phe Arg Lys Arg Trp Gln Asn Glu Lys Leu Gly Leu 165 170 175Asp Ala Gly Asp Glu Tyr Glu Asp Glu Asn Leu Tyr Glu Gly Leu Asn 180 185 190Leu Asp Asp Cys Ser Met Tyr Glu Asp Ile Ser Arg Gly Leu Gln Gly 195 200 205Thr Tyr Gln Asp Val Gly Ser Leu Asn Ile Gly Asp Val Gln Leu Glu 210 215 220Lys Pro225 33 723 DNA Homo sapiens CDS (17)...(706) human Ig-beta protein 33gaattccgcg gtgacc atg gcc agg ctg gcg ttg tct cct gtg ccc agc cac 52 Met Ala Arg Leu Ala Leu Ser Pro Val Pro Ser His 1 5 10tgg atg gtg gcg ttg ctg ctg ctg ctc tca gct gag cca gta cca gca 100Trp Met Val Ala Leu Leu Leu Leu Leu Ser Ala Glu Pro Val Pro Ala 15 20 25gcc aga tcg gag gac cgg tac cgg aat ccc aaa ggt agt gct tgt tcg 148Ala Arg Ser Glu Asp Arg Tyr Arg Asn Pro Lys Gly Ser Ala Cys Ser 30 35 40cgg atc tgg cag agc cca cgt ttc ata gcc agg aaa cgg cgc ttc acg 196Arg Ile Trp Gln Ser Pro Arg Phe Ile Ala Arg Lys Arg Arg Phe Thr 45 50 55 60gtg aaa atg cac tgc tac atg aac agc gcc tcc ggc aat gtg agc tgg 244Val Lys Met His Cys Tyr Met Asn Ser Ala Ser Gly Asn Val Ser Trp 65 70 75ctc tgg aag cag gag atg gac gag aat ccc cag cag ctg aag ctg gaa 292Leu Trp Lys Gln Glu Met Asp Glu Asn Pro Gln Gln Leu Lys Leu Glu 80 85 90aag ggc cgc atg gaa gag tcc cag aac gaa tct ctc gcc acc ctc acc 340Lys Gly Arg Met Glu Glu Ser Gln Asn Glu Ser Leu Ala Thr Leu Thr 95 100 105atc caa ggc atc cgg ttt gag gac aat ggc atc tac ttc tgc cag cag 388Ile Gln Gly Ile Arg Phe Glu Asp Asn Gly Ile Tyr Phe Cys Gln Gln 110 115 120aag tgc aac aac acc tcg gag gtc tac cag ggc tgc ggc aca gag ctg 436Lys Cys Asn Asn Thr Ser Glu Val Tyr Gln Gly Cys Gly Thr Glu Leu125 130 135 140cga gtc atg gga ttc agc acc ttg gca cag ctg aag cag agg aac acg 484Arg Val Met Gly Phe Ser Thr Leu Ala Gln Leu Lys Gln Arg Asn Thr 145 150 155ctg aag gat ggt atc atc atg atc cag acg ctg ctg atc atc ctc ttc 532Leu Lys Asp Gly Ile Ile Met Ile Gln Thr Leu Leu Ile Ile Leu Phe 160 165 170atc atc gtg cct atc ttc ctg ctg ctg gac aag gat gac agc aag gct 580Ile Ile Val Pro Ile Phe Leu Leu Leu Asp Lys Asp Asp Ser Lys Ala 175 180 185ggc atg gag gaa gat cac acc tac gag ggc ctg gac att gac cag aca 628Gly Met Glu Glu Asp His Thr Tyr Glu Gly Leu Asp Ile Asp Gln Thr 190 195 200gcc acc tat gag gac ata gtg acg ctg cgg aca ggg gaa gtg aag tgg 676Ala Thr Tyr Glu Asp Ile Val Thr Leu Arg Thr Gly Glu Val Lys Trp205 210 215 220tct gta ggt gag cac cca ggc cag gag tgagagccag gtcgccccat 723Ser Val Gly Glu His Pro Gly Gln Glu 225 34 229 PRT Homo sapiens human Ig-beta protein 34Met Ala Arg Leu Ala Leu Ser Pro Val Pro Ser His Trp Met Val Ala 1 5 10 15Leu Leu Leu Leu Leu Ser Ala Glu Pro Val Pro Ala Ala Arg Ser Glu 20 25 30Asp Arg Tyr Arg Asn Pro Lys Gly Ser Ala Cys Ser Arg Ile Trp Gln 35 40 45Ser Pro Arg Phe Ile Ala Arg Lys Arg Arg Phe Thr Val Lys Met His 50 55 60Cys Tyr Met Asn Ser Ala Ser Gly Asn Val Ser Trp Leu Trp Lys Gln65 70 75 80Glu Met Asp Glu Asn Pro Gln Gln Leu Lys Leu Glu Lys Gly Arg Met 85 90 95Glu Glu Ser Gln Asn Glu Ser Leu Ala Thr Leu Thr Ile Gln Gly Ile 100 105 110Arg Phe Glu Asp Asn Gly Ile Tyr Phe Cys Gln Gln Lys Cys Asn Asn 115 120 125Thr Ser Glu Val Tyr Gln Gly Cys Gly Thr Glu Leu Arg Val Met Gly 130 135 140Phe Ser Thr Leu Ala Gln Leu Lys Gln Arg Asn Thr Leu Lys Asp Gly145 150 155 160Ile Ile Met Ile Gln Thr Leu Leu Ile Ile Leu Phe Ile Ile Val Pro 165 170 175Ile Phe Leu Leu Leu Asp Lys Asp Asp Ser Lys Ala Gly Met Glu Glu 180 185 190Asp His Thr Tyr Glu Gly Leu Asp Ile Asp Gln Thr Ala Thr Tyr Glu 195 200 205Asp Ile Val Thr Leu Arg Thr Gly Glu Val Lys Trp Ser Val Gly Glu 210 215 220His Pro Gly Gln Glu225 35 5053 DNA Artificial Sequence vector pEP2 35gacggatcgg gagatctccc gatcccctat ggtcgactct cagtacaatc tgctctgatg 60ccgcatagtt aagccagtat ctgctccctg cttgtgtgtt ggaggtcgct gagtagtgcg 120cgagcaaaat ttaagctaca acaaggcaag gcttgaccga caattgcatg aagaatctgc 180ttagggttag gcgttttgcg ctgcttcgcg atgtacgggc cagatatacg cgttgacatt 240gattattgac tagttattaa tagtaatcaa ttacggggtc attagttcat agcccatata 300tggagttccg cgttacataa cttacggtaa atggcccgcc tggctgaccg cccaacgacc 360cccgcccatt gacgtcaata atgacgtatg ttcccatagt aacgccaata gggactttcc 420attgacgtca atgggtggac tatttacggt aaactgccca cttggcagta catcaagtgt 480atcatatgcc aagtacgccc cctattgacg tcaatgacgg taaatggccc gcctggcatt 540atgcccagta catgacctta tgggactttc ctacttggca gtacatctac gtattagtca 600tcgctattac catggtgatg cggttttggc agtacatcaa tgggcgtgga tagcggtttg 660actcacgggg atttccaagt ctccacccca ttgacgtcaa tgggagtttg ttttggcacc 720aaaatcaacg ggactttcca aaatgtcgta acaactccgc cccattgacg caaatgggcg 780gtaggcgtgt acggtgggag gtctatataa gcagagctct ctggctaact agagaaccca 840ctgcttactg gcttatcgaa attaatacga ctcactatag ggagacccaa gctggctaga 900gtaagtaccg cctatagagt ctataggccc acccccttgg cttcttatgc atgctatact 960gtttttggct tggggtctat acacccccgc ttcctcatgt tataggtgat ggtatagctt 1020agcctatagg tgtgggttat tgaccattat tgaccactcc cctattggtg acgatacttt 1080ccattactaa tccataacat ggctctttgc cacaactctc tttattggct atatgccaat 1140acactgtcct tcagagactg acacggactc tgtattttta caggatgggg tctcatttat 1200tatttacaaa ttcacatata caacaccacc gtccccagtg cccgcagttt ttattaaaca 1260taacgtggga tctccacgcg aatctcgggt acgtgttccg gacatgggct cttctccggt 1320agcggcggag cttctacatc cgagccctgc tcccatgcct ccagcgactc atggtcgctc 1380ggcagctcct tgctcctaac agtggaggcc agacttaggc acagcacgat gcccaccacc 1440accagtgtgc cgcacaaggc cgtggcggta gggtatgtgt ctgaaaatga gctcggggag 1500cgggcttgca ccgctgacgc atttggaaga cttaaggcag cggcagaaga agatgcaggc 1560agctgagttg ttgtgttctg ataagagtca gaggtaactc ccgttgcggt gctgttaacg 1620gtggagggca gtgtagtctg agcagtactc gttgctgccg cgcgcgccac cagacataat 1680agctgacaga ctaacagact gttcctttcc atgggtcttt tctgcaggct agccggcctg 1740aattcggata tccaagcttg atgaataaaa gatcagagct ctagtgatct gtgtgttggt 1800tttttgtgtg ctcgagcccc agctggttct ttccgcctca gaagccatag agcccaccgc 1860atccccagca tgcctgctat tgtcttccca atcctccccc ttgctgtcct gccccacccc 1920accccccaga atagaatgac acctactcag acaatgcgat gcaatttcct cattttatta 1980ggaaaggaca gtgggagtgg caccttccag ggtcaaggaa ggcacggggg aggggcaaac 2040aacagatggc tggcaactag aaggcacagt cgaggctgat cagcgagctc tagcggtacc 2100ggcattagtc tatggccgac tctagatttt ctccttgcgg ccgccctaga tgcatgctcg 2160atcgacctgc agttggacct gggagtggac acctgtggag agaaaggcaa agtggatgtc 2220attgtcactc aagtgtatgg ccagatctca agcctgccac acctcaagct agcttgacaa 2280caaaaagatt gtcttttctg accagatgga cgcggccacc ctcaaaggca tcaccgcggg 2340ccaggtgaat atcaaatcct cctcgttttt ggaaactgac aatcttagcg cagaagtcat 2400gcccgctttt gagagggagt actcacccca acagctggcc ctcgcagaca gcgaattaat 2460tccagcacac tggcggccgt tactagtgga tccgagctcg caagctagct tgggtctccc 2520tatagtgagt cgtattaatt tcgataagcc agtaagcagt gggttctcta gttagccaga 2580gagctctgct tatatagacc tcccaccgta cacgcctacc gcccatttgc gtcaatgggg 2640cggagttgtt acgacatttt ggaaagtccc gttgattttg gtgccaaaac aaactcccat 2700tgacgtcaat ggggtggaga cttggaaatc cccgtgagtc aaaccgctat ccacgcccat 2760tgatgtactg ccaaaaccgc atcaccatgg taatagcgat gactaatacg tagatgtact 2820gccaagtagg aaagtcccat aaggtcatgt actgggcata atgccaggcg ggccatttac 2880cgtcattgac gtcaataggg ggcgtacttg gcatatgata cacttgatgt actgccaagt 2940gggcagttta ccgtaaatag tccacccatt gacgtcaatg gaaagtccct attggcgtta 3000ctatgggaac atacgtcatt attgacgtca atgggcgggg gtcgttgggc ggtcagccag 3060gcgggccatt taccgtaagt tatgtaacgc ggaactccat atatgggcta tgaactaatg 3120accccgtaat tgattactat taataactag tcaataatca atgtcctgca ttaatgaatc 3180ggccaacgcg cggggagagg cggtttgcgt attgggcgct cttccgcttc ctcgctcact 3240gactcgctgc gctcggtcgt tcggctgcgg cgagcggtat cagctcactc aaaggcggta 3300atacggttat ccacagaatc aggggataac gcaggaaaga acatgtgagc aaaaggccag 3360caaaaggcca ggaaccgtaa aaaggccgcg ttgctggcgt ttttccatag gctccgcccc 3420cctgacgagc atcacaaaaa tcgacgctca agtcagaggt ggcgaaaccc gacaggacta 3480taaagatacc aggcgtttcc ccctggaagc tccctcgtgc gctctcctgt tccgaccctg 3540ccgcttaccg gatacctgtc cgcctttctc ccttcgggaa gcgtggcgct ttctcaatgc 3600tcacgctgta ggtatctcag ttcggtgtag gtcgttcgct ccaagctggg ctgtgtgcac 3660gaaccccccg ttcagcccga ccgctgcgcc ttatccggta actatcgtct tgagtccaac 3720ccggtaagac acgacttatc gccactggca gcagccactg gtaacaggat tagcagagcg 3780aggtatgtag gcggtgctac agagttcttg aagtggtggc ctaactacgg ctacactaga 3840aggacagtat ttggtatctg cgctctgctg aagccagtta ccttcggaaa aagagttggt 3900agctcttgat ccggcaaaca aaccaccgct ggtagcggtg gtttttttgt ttgcaagcag 3960cagattacgc gcagaaaaaa aggatctcaa gaagatcctt tgatcttttc tacggggtct 4020gacgctcagt ggaacgaaaa ctcacgttaa gggattttgg tcatgaacaa taaaactgtc 4080tgcttacata aacagtaata caaggggtgt tatgagccat attcaacggg aaacgtcttg 4140ctcgaggccg cgattaaatt ccaacatgga tgctgattta tatgggtata aatgggctcg 4200cgataatgtc gggcaatcag gtgcgacaat ctatcgattg tatgggaagc ccgatgcgcc 4260agagttgttt ctgaaacatg gcaaaggtag cgttgccaat gatgttacag atgagatggt 4320cagactaaac tggctgacgg aatttatgcc tcttccgacc atcaagcatt ttatccgtac 4380tcctgatgat gcatggttac tcaccactgc gatccccggg aaaacagcat tccaggtatt 4440agaagaatat cctgattcag gtgaaaatat tgttgatgcg ctggcagtgt tcctgcgccg 4500gttgcattcg attcctgttt gtaattgtcc ttttaacagc gatcgcgtat ttcgtctcgc 4560tcaggcgcaa tcacgaatga ataacggttt ggttgatgcg agtgattttg atgacgagcg 4620taatggctgg cctgttgaac aagtctggaa agaaatgcat aaacttttgc cattctcacc 4680ggattcagtc gtcactcatg gtgatttctc acttgataac cttatttttg acgaggggaa 4740attaataggt tgtattgatg ttggacgagt cggaatcgca gaccgatacc aggatcttgc 4800catcctatgg aactgcctcg gtgagttttc tccttcatta cagaaacggc tttttcaaaa 4860atatggtatt gataatcctg atatgaataa attgcagttt catttgatgc tcgatgagtt 4920tttctaatca gaattggtta attggttgta acactggcag agcatcatga gcggatacat 4980atttgaatgt atttagaaaa ataaacaaat aggggttccg cgcacatttc cccgaaaagt 5040gccacctgac gtc 5053 36 411 DNA Artificial Sequence vector pMIN.0 36gctagcgccg ccacc atg gga atg cag gtg cag atc cag agc ctg ttt ctg 51 Met Gly Met Gln Val Gln Ile Gln Ser Leu Phe Leu 1 5 10ctc ctc ctg tgg gtg ccc ggg tcc aga gga cac acc ctg tgg aag gcc 99Leu Leu Leu Trp Val Pro Gly Ser Arg Gly His Thr Leu Trp Lys Ala 15 20 25gga atc ctg tat aag gcc aag ttc gtg gct gcc tgg acc ctg aag gct 147Gly Ile Leu Tyr Lys Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala 30 35 40gcc gct ttc ctg cct agc gat ttc ttt cct agc gtg aag ctg acc cca 195Ala Ala Phe Leu Pro Ser Asp Phe Phe Pro Ser Val Lys Leu Thr Pro 45 50 55 60ctg tgc gtg acc ctg tat atg gat gac gtg gtg ctg gga gcc agc atc 243Leu Cys Val Thr Leu Tyr Met Asp Asp Val Val Leu Gly Ala Ser Ile 65 70 75atc aac ttc gag aag ctg gga ctg tcc aga tac gtg gct agg ctg atc 291Ile Asn Phe Glu Lys Leu Gly Leu Ser Arg Tyr Val Ala Arg Leu Ile 80 85 90ctg aag gag cct gtg cac ggc gtg tcc acc ctg cca gag acc acc gtg 339Leu Lys Glu Pro Val His Gly Val Ser Thr Leu Pro Glu Thr Thr Val 95 100 105gtg agg agg acc gtg tac tat gga gtg cct gtg tgg aag tgg ctg agc 387Val Arg Arg Thr Val Tyr Tyr Gly Val Pro Val Trp Lys Trp Leu Ser 110 115 120ctg ctg gtg ccc ttt gtg ggt acc 411Leu Leu Val Pro Phe Val Gly Thr125 130 37 132 PRT Artificial Sequence vector pMIN.0 37Met Gly Met Gln Val Gln Ile Gln Ser Leu Phe Leu Leu Leu Leu Trp 1 5 10 15Val Pro Gly Ser Arg Gly His Thr Leu Trp Lys Ala Gly Ile Leu Tyr 20 25 30Lys Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Phe Leu 35 40 45Pro Ser Asp Phe Phe Pro Ser Val Lys Leu Thr Pro Leu Cys Val Thr 50 55 60Leu Tyr Met Asp Asp Val Val Leu Gly Ala Ser Ile Ile Asn Phe Glu65 70 75 80Lys Leu Gly Leu Ser Arg Tyr Val Ala Arg Leu Ile Leu Lys Glu Pro 85 90 95Val His Gly Val Ser Thr Leu Pro Glu Thr Thr Val Val Arg Arg Thr 100 105 110Val Tyr Tyr Gly Val Pro Val Trp Lys Trp Leu Ser Leu Leu Val Pro 115 120 125Phe Val Gly Thr 130 38 390 DNA Artificial Sequence vector pMIN.1 38gctagcgccg ccacc atg gga atg cag gtg cag atc cag agc ctg ttt ctg 51 Met Gly Met Gln Val Gln Ile Gln Ser Leu Phe Leu 1 5 10ctc ctc ctg tgg gtg ccc ggg tcc aga gga cac acc ctg tgg aag gcc 99Leu Leu Leu Trp Val Pro Gly Ser Arg Gly His Thr Leu Trp Lys Ala 15 20 25gga atc ctg tat aag gcc aag ttc gtg gct gcc tgg acc ctg aag gct 147Gly Ile Leu Tyr Lys Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala 30 35 40gcc gct ttc ctg cct agc gat ttc ttt cct agc gtg aag ctg acc cca 195Ala Ala Phe Leu Pro Ser Asp Phe Phe Pro Ser Val Lys Leu Thr Pro 45 50 55 60ctg tgc gtg acc ctg tat atg gat gac gtg gtg ctg gga gtg gga ctg 243Leu Cys Val Thr Leu Tyr Met Asp Asp Val Val Leu Gly Val Gly Leu 65 70 75tcc agg tac gtg gct agg ctg atc ctg aag gag cct gtg cac ggc gtg 291Ser Arg Tyr Val Ala Arg Leu Ile Leu Lys Glu Pro Val His Gly Val 80 85 90tcc acc ctg cca gag acc acc gtg gtg agg agg acc gtg tac tat gga 339Ser Thr Leu Pro Glu Thr Thr Val Val Arg Arg Thr Val Tyr Tyr Gly 95 100 105gtg cct gtg tgg aag tgg ctg agc ctg ctg gtg ccc ttt gtg 381Val Pro Val Trp Lys Trp Leu Ser Leu Leu Val Pro Phe Val 110 115 120tgaggtacc 390 39 122 PRT Artificial Sequence vector pMIN.1 39Met Gly Met Gln Val Gln Ile Gln Ser Leu Phe Leu Leu Leu Leu Trp 1 5 10 15Val Pro Gly Ser Arg Gly His Thr Leu Trp Lys Ala Gly Ile Leu Tyr 20 25 30Lys Ala Lys Phe Val Ala Ala Trp Thr Leu Lys Ala Ala Ala Phe Leu 35 40 45Pro Ser Asp Phe Phe Pro Ser Val Lys Leu Thr Pro Leu Cys Val Thr 50 55 60Leu Tyr Met Asp Asp Val Val Leu Gly Val Gly Leu Ser Arg Tyr Val65 70 75 80Ala Arg Leu Ile Leu Lys Glu Pro Val His Gly Val Ser Thr Leu Pro 85 90 95Glu Thr Thr Val Val Arg Arg Thr Val Tyr Tyr Gly Val Pro Val Trp 100 105 110Lys Trp Leu Ser Leu Leu Val Pro Phe Val 115 120 40 36 DNA Artificial Sequence primer oligonucleotide murIi-F 40gctagcgccg ccaccatgga tgaccaacgc gacctc 36 41 27 DNA Artificial Sequence primer oligonucleotide murIi-R 41ggtacctcac agggtgactt gacccag 27 42 42 DNA Artificial Sequence primer oligonucleotide IiPADRE-R 42cagggtccag gcagccacga acttggccac aggtttggca ga 42 43 43 DNA Artificial Sequence primer oligonucleotide IiPADRE-F 43ggctgcctgg accctgaagg ctgccgctat gtccatggat aac 43 44 70 DNA Artificial Sequence oligo 1 44cttcgcatga agcttatcag ccaggctgtg cacgccgctc acgccgaaat caacgaagct 60ggaagaaccc 70 45 70 DNA Artificial Sequence oligo 2 45ttctggtcag cagaaagaac aggataggag cgtttggagg gcgataagct ggaggggttc 60ttccagcttc 70 46 71 DNA Artificial Sequence oligo 3 46ttctgctgac cagaatcctg acaatccccc agtccctgga cgccaagttc gtggctgcct 60ggaccctgaa g 71 47 34 DNA Artificial Sequence Help-epR primer 47ggtacctcaa gcggcagcct tcagggtcca ggca 34 48 17 PRT Artificial Sequence residues 323-339 of ovalbumin (Ova323-339) 48Ile Ser Gln Ala Val His Ala Ala His Ala Glu Ile Asn Glu Ala Gly 1 5 10 15Arg 49 13 PRT Artificial Sequence residues 128-141 of HBV core antigen (HBVcore 128) 49Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala Pro Ile Leu 1 5 10 50 15 PRT Artificial Sequence residues 182-196 of HBV env (HBVenv182) 50Phe Phe Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser Leu Asp 1 5 10 15 51 19 DNA Artificial Sequence Th-Pad-R primer 51agcggcagcc ttcagggtc 19 52 43 DNA Artificial Sequence IiPADRE-F primer 52ggctgcctgg accctgaagg ctgccgctat gtccatggat aac 43 53 20 DNA Artificial Sequence primer Th-ova-F 53atcagccagg ctgtgcacgc 20 54 27 DNA Artificial Sequence primer 1F oligonucleotide KappaSig-F 54gctagcgccg ccaccatggg aatgcag 27 55 27 DNA Artificial Sequence primer 1R oligonucleotide Kappa-Th-R 55cacagcctgg ctgattcctc tggaccc 27 56 33 DNA Artificial Sequence primer 2F oligonucleotide PAD/LAMP-F 56ctgaaggctg ccgctaacaa catgttgatc ccc 33 57 24 DNA Artificial Sequence primer 2R oligonucleotide LAMP-CYTOR 57ggtaccctag atggtctgat agcc 24 58 33 DNA Artificial Sequence primer 1F oligonucleotide H2-Mb-1F 58gccgctagcg ccgccaccat ggctgcactc tgg 33 59 30 DNA Artificial Sequence primer 1R oligonucleotide H2-Mb-1R 59cacagcctgg ctgatcccca tacagtgcag 30 60 30 DNA Artificial Sequence primer 2F oligonucleotide H2-Mb-2F 60ctgaaggctg ccgctaaggt ctctgtgtct 30 61 24 DNA Artificial Sequence primer 2R oligonucleotide H2-Mb-2R 61gcgggtaccc taatgccgtc cttc 24 62 33 DNA Artificial Sequence primer 1F oligonucleotide H2-Ob-1F 62gcggctagcg ccgccaccat gggcgctggg agg 33 63 30 DNA Artificial Sequence primer 1R oligonucleotide H2-Ob-1R 63tgcacagcct ggctgatgga atccagcctc 30 64 30 DNA Artificial Sequence primer 2F oligonucleotide H2-Ob-2F 64ctgaaggctg ccgctatact gagtggagct 30 65 26 DNA Artificial Sequence primer 2R oligonucleotide H2-Ob-2R 65gccggtacct catgtgacat gtcccg 26 66 80 DNA Artificial Sequence PADRE-Influenza matrix 5′ primer 66gctagcgccg ccaccatggc caagttcgtg gctgcctgga ccctgaaggc tgccgctatg 60agtcttctaa ccgaggtcga 80 67 30 DNA Artificial Sequence PADRE-Influenza matrix 3′ primer 67tcacttgaat cgctgcatct gcacccccat 30 68 58 DNA Artificial Sequence PADRE-HBV-s one oligonucleotide 68gctagcgccg ccaccatggc caagttcgtg gctgcctgga ccctgaaggc tgccgctc 58 69 58 DNA Artificial Sequence PADRE-HBV-s second oligonucleotide 69ctcgagagcg gcagccttca gggtccaggc agccacgaac ttggccatgg tggcggcg 58 70 33 DNA Artificial Sequence primer 1F oligonucleotide Ig alpha-1F 70gcggctagcg ccgccaccat gccagggggt cta 33 71 30 DNA Artificial Sequence primer 1R oligonucleotide Ig alpha-1R 71gcacagcctg gctgatggcc tggcatccgg 30 72 30 DNA Artificial Sequence primer 2F oligonucleotide Ig alpha-2F 72ctgaaggctg ccgctgggat catcttgctg 30 73 27 DNA Artificial Sequence primer 2R oligonucleotide Ig alpha-2R 73gcgggtacct catggctttt ccagctg 27 74 33 DNA Artificial Sequence primer 1F oligonucleotide B29-1F 74gcggctagcg ccgccaccat ggccacactg gtg 33 75 30 DNA Artificial Sequence primer 1R oligonucleotide B29-1R 75cacagcctgg ctgatcggct cacctgagaa 30 76 30 DNA Artificial Sequence primer 2F oligonucleotide B29-2F (30mer) 76ctgaaggctg ccgctattat cttgatccag 30 77 27 DNA Artificial Sequence primer 2R oligonucleotide B29-2R (27mer) 77gccggtacct cattcctggc ctggatg 27 78 21 DNA Artificial Sequence pUC4K amplification primer 78tctgatgtta cattgcacaa g 21 79 33 DNA Artificial Sequence pUC4K amplification primer 79gcgcactcat gatgctctgc cagtgttaca acc 33 80 30 DNA Artificial Sequence CMV DNA amplification primer 80gcgtctagag taagtaccgc ctatagactc 30 81 30 DNA Artificial Sequence CMV DNA amplification primer 81ccggctagcc tgcagaaaag acccatggaa 30 82 49 DNA Artificial Sequence polylinker oligo 82ggccgcaagg aaaaaatcta gagtcggcca tagactaatg ccggtaccg 49 83 50 DNA Artificial Sequence polylinker oligo 83ctagcggtac cggcattagt ctatggcccg actctagatt ttttccttgc 50 84 72 DNA Artificial Sequence oligo annealed to produce fragment with polylinker, polyadenylation signal and EcoRI and XhoI cohesive ends 84aattcggata tccaagcttg atgaataaaa gatcagagct ctagtgatct gtgtgttggt 60ttttttgtgt gc 72 85 72 DNA Artificial Sequence oligo annealed to produce fragment with polylinker, polyadenylation signal and EcoRI and XhoI cohesive ends 85tcgagcacac aaaaaaccaa cacacagatc actagagctc tgatcttttt attcatcaag 60cttggatatc cg 72 86 20 PRT Artificial Sequence consensus mouse Ig Kappa signal sequence 86Met Gln Val Gln Ile Gln Ser Leu Phe Leu Leu Leu Leu Trp Val Pro 1 5 10 15Gly Ser Arg Gly 20 87 60 DNA Artificial Sequence nucleotides encoding consensus mouse Ig Kappa signal sequence 87atgcaggtgc agatccagag cctgtttctg ctcctcctgt gggtgcccgg gtccagagga 60 88 11 PRT Artificial Sequence HBV pol 149-159 (A11 restricted) (peptide 1147.16) 88His Thr Leu Trp Lys Ala Gly Ile Leu Tyr Lys 1 5 10 89 33 DNA Artificial Sequence nucleotides encoding HBV pol 149-159 (A11 restricted) 89cacaccctgt ggaaggccgg aatcctgtat aag 33 90 39 DNA Artificial Sequence nucleotides encoding PADRE-universal MHC class II epitope 90gccaagttcg tggctgcctg gaccctgaag gctgccgct 39 91 10 PRT Artificial Sequence HBV core 18-27 (A2 restricted) (peptide 924.07) 91Phe Leu Pro Ser Asp Phe Phe Pro Ser Val 1 5 10 92 30 DNA Artificial Sequence nucleotides encoding HBV core 18-27 (A2 restricted) 92ttcctgccta gcgatttctt tcctagcgtg 30 93 9 PRT Artificial Sequence HIV env 120-128 (A2 restricted) (peptide 1211.04) 93Lys Leu Thr Pro Leu Cys Val Thr Leu 1 5 94 27 DNA Artificial Sequence nucleotides encoding HIV env 120-128 (A2 restricted) 94aagctgaccc cactgtgcgt gaccctg 27 95 9 PRT Artificial Sequence HBV pol 551-559 (A2 restricted) (peptide 1090.14) 95Tyr Met Asp Asp Val Val Leu Gly Ala 1 5 96 27 DNA Artificial Sequence nucleotides encoding HBV pol 551-559 (A2 restricted) 96tatatggatg acgtggtgct gggagcc 27 97 8 PRT Artificial Sequence mouse ovalbumin 257-264 (Kb restricted) 97Ser Ile Ile Asn Phe Glu Lys Leu 1 5 98 24 DNA Artificial Sequence nucleotides encoding mouse ovalbumin 257-264 (Kb restricted) 98agcatcatca acttcgagaa gctg 24 99 9 PRT Artificial Sequence HBV pol 455-463 (A2 restricted) (peptide 1168.02) 99Gly Leu Ser Arg Tyr Val Ala Arg Leu 1 5 100 27 DNA Artificial Sequence nucleotides encoding HBV pol 455-463 (A2 restricted) 100ggactgttca gatacgtggc taggctg 27 101 9 PRT Artificial Sequence HIV pol 476-484 (A2 restricted) (peptide 941.031) 101Ile Leu Lys Glu Pro Val His Gly Val 1 5 102 27 DNA Artificial Sequence nucleotides encoding HIV pol 476-484 (A2 restricted) 102atcctgaagg agcctgtgca cggcgtg 27 103 11 PRT Artificial Sequence HBV core 141-151 (A11 restricted) (peptide 1083.01) 103Ser Thr Leu Pro Glu Thr Thr Val Val Arg Arg 1 5 10 104 33 DNA Artificial Sequence nucleotides encoding HBV core 141-151 (A11 restricted) 104tccaccctgc cagagaccac cgtggtgagg aga 33 105 10 PRT Artificial Sequence HIV env 49-58 (A11 restricted) (peptide 1069.43) 105Thr Val Tyr Tyr Gly Val Pro Val Trp Lys 1 5 10 106 30 DNA Artificial Sequence nucleotides encoding HIV env 49-58 (A11 restricted) 106accgtgtact atggagtgcc tgtgtggaag 30 107 9 PRT Artificial Sequence HBVadr-ENV (S Ag 335-343) (A2 restricted) (peptide 1013.0102) 107Trp Leu Ser Leu Leu Val Pro Phe Val 1 5 108 27 DNA Artificial Sequence nucleotides encoding HBV env 335-343 (A2 restricted) 108tggctgagcc tgctggtgcc ctttgtg 27 109 12 DNA Artificial Sequence consensus Kozak sequence 109gccgccacca tg 12 110 70 DNA Artificial Sequence Min1 oligo 110gaggagcaga aacaggctct ggatctgcac ctgcattccc atggtggcgg cgctagcaag 60cttcttgcgc 70 111 71 DNA Artificial Sequence Min2 oligo 111cctgtttctg ctcctcctgt gggtgcccgg gtccagagga cacaccctgt ggaaggccgg 60aatcctgtat a 71 112 70 DNA Artificial Sequence Min3 oligo 112tcgctaggca ggaaagcggc agccttcagg gtccaggcag ccacgaactt ggccttatac 60aggattccgg 70 113 71 DNA Artificial Sequence Min4 oligo 113ctttcctgcc tagcgatttc tttcctagcg tgaagctgac cccactgtgc gtgaccctgt 60atatggatga c 71 114 70 DNA Artificial Sequence Min5 oligo 114cgtacctgga cagtcccagc ttctcgaagt tgatgatgct ggctcccagc accacgtcat 60ccatatacag 70 115 71 DNA Artificial Sequence Min6 oligo 115ggactgtcca gatacgtggc taggctgatc ctgaaggagc ctgtgcacgg cgtgtccacc 60ctgccagaga c 71 116 70 DNA Artificial Sequence Min7 oligo 116gctcagccac ttccacacag gcactccata gtacacggtc ctcctcacca cggtggtctc 60tggcagggtg 70 117 51 DNA Artificial Sequence Min8 oligo 117gtggaagtgg ctgagcctgc tggtgccctt tgtgggtacc tgatctagag c 51 118 20 DNA Artificial Sequence flanking primer 5′ 118gcgcaagaag cttgctagcg 20 119 21 DNA Artificial Sequence flanking primer 3′ 119gctctagatc aggtacccca c 21 120 30 DNA Artificial Sequence primer Min-ovaR 120tggacagtcc cactcccagc accacgtcat 30 121 30 DNA Artificial Sequence primer Min-ovaF 121gctgggagtg ggactgtcca ggtacgtggc 30 122 29 DNA Artificial Sequence primer Min-StopR 122ggtacctcac acaaagggca ccagcaggc 29 123 8 PRT Artificial Sequence HBV Env-HIV Pol 476 123Leu Leu Val Pro Phe Val Ile Leu 1 5 124 14 PRT Artificial Sequence HBVcore128 124Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala Pro Ile Leu Phe 1 5 10 125 9 PRT Artificial Sequence HBV Pol 551-V (peptide 1090.77) 125Tyr Met Asp Asp Val Val Leu Gly Val 1 5 126 30 DNA Artificial Sequence first reaction amplification primer for pMin.1-No PADRE 126atcgctaggc aggaacttat acaggattcc 30 127 27 DNA Artificial Sequence first reaction amplification primer for pMin.1-Anchor 127tggacagtcc ggctcccagc accacgt 27 128 18 DNA Artificial Sequence 3′ amplification primer (No PADRE) 128ttcctgccta gcgatttc 18 129 27 DNA Artificial Sequence 3′ amplification primer (Anchor) 129gctgggagcc ggactgtcca ggtacgt 27 130 42 DNA Artificial Sequence PCR amplification primer for Ig signal sequence deletion from pMin.1 for pMin.1-No Sig 130gctagcgccg ccaccatgca caccctgtgg aaggccggaa tc 42 131 39 DNA Artificial Sequence pMin.1-Switch 5′ fragment amplification primer 131gggcaccagc aggctcagcc acactcccag caccacgtc 39 132 40 DNA Artificial Sequence pMin.1-Switch second overlapping fragment amplification primer 132agcctgctgg tgccctttgt gatcctgaag gagcctgtgc 40 133 41 DNA Artificial Sequence pMin.1-Switch second overlapping fragment amplification primer 133agccacgtac ctggacagtc ccttccacac aggcactcca t 41 134 32 DNA Artificial Sequence pMin.1-Switch 3′ third fragment amplification primer 134tgtccaggta cgtggctagg ctgtgaggta cc 32 135 42 DNA Artificial Sequence PCR amplification primer Min.0-No Sig-5′ for deletion of signal sequence from pMin.0 for pMin.2-GFP 135gctagcgccg ccaccatgca caccctgtgg aaggccggaa tc 42 136 10 PRT Artificial Sequence HBV Env 335-HBV Pol 551 136Val Leu Gly Val Trp Leu Ser Leu Leu Val 1 5 10 137 15 PRT Artificial Sequence HBV POL 661 (peptide 1298.06) 137Lys Gln Ala Phe Thr Phe Ser Pro Thr Tyr Lys Ala Phe Leu Cys 1 5 10 15 138 15 PRT Artificial Sequence HBV POL 412 (peptide F107.03) 138Leu Gln Ser Leu Thr Asn Leu Leu Ser Ser Asn Leu Ser Trp Leu 1 5 10 15 139 15 PRT Artificial Sequence HBV ENV 180 (peptide 1280.06) 139Ala Gly Phe Phe Leu Leu Thr Arg Ile Leu Thr Ile Pro Gln Ser 1 5 10 15 140 15 PRT Artificial Sequence HBV POL 774 (peptide 1280.09) 140Gly Thr Ser Phe Val Tyr Val Pro Ser Ala Leu Asn Pro Ala Asp 1 5 10 15 141 20 PRT Artificial Sequence HBV NUC 120 (peptide CF-08) 141Val Ser Phe Gly Val Trp Ile Arg Thr Pro Pro Ala Tyr Arg Pro Pro 1 5 10 15Asn Ala Pro Ile 20 142 15 PRT Artificial Sequence HBV NUC 123 (peptide 27.0280) 142Gly Val Trp Ile Arg Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala 1 5 10 15 143 15 PRT Artificial Sequence HBV NUC 121 (peptide 1186.25) 143Ser Phe Gly Val Trp Ile Arg Thr Pro Pro Ala Tyr Arg Pro Pro 1 5 10 15 144 15 PRT Artificial Sequence HBV POL 145 (peptide 27.0281) 144Arg His Tyr Leu His Thr Leu Trp Lys Ala Gly Ile Leu Tyr Lys 1 5 10 15 145 15 PRT Artificial Sequence HBV POL 523 (peptide F107.04) 145Pro Phe Leu Leu Ala Gln Phe Thr Ser Ala Ile Cys Ser Val Val 1 5 10 15 146 15 PRT Artificial Sequence HBV ENV 339 (peptide 1186.15) 146Leu Val Pro Phe Val Gln Trp Phe Val Gly Leu Ser Pro Thr Val 1 5 10 15 147 15 PRT Artificial Sequence HBV POL 501 (peptide 1280.15) 147Leu His Leu Tyr Ser His Pro Ile Ile Leu Gly Phe Arg Lys Ile 1 5 10 15 148 15 PRT Artificial Sequence HBV POL 615 (peptide 1298.04) 148Lys Gln Cys Phe Arg Lys Leu Pro Val Asn Arg Pro Ile Asp Trp 1 5 10 15 149 15 PRT Artificial Sequence HBV POL 764 (peptide 1298.07) 149Ala Ala Asn Trp Ile Leu Arg Gly Thr Ser Phe Val Tyr Val Pro 1 5 10 15 150 20 PRT Artificial Sequence HBV CORE 50 (peptide 857.02) 150Pro His His Thr Ala Leu Arg Gln Ala Ile Leu Cys Trp Gly Glu Leu 1 5 10 15Met Thr Leu Ala 20 151 15 PRT Artificial Sequence HBV POL 683 (peptide 35.0100) 151Leu Cys Gln Val Phe Ala Asp Ala Thr Pro Thr Gly Trp Gly Leu 1 5 10 15 152 15 PRT Artificial Sequence HBV POL 387 (peptide 35.0096) 152Glu Ser Arg Leu Val Val Asp Phe Ser Gln Phe Ser Arg Gly Asn 1 5 10 15 153 15 PRT Artificial Sequence HBV POL 96 (peptide 35.0093) 153Val Gly Pro Leu Thr Val Asn Glu Lys Arg Arg Leu Lys Leu Ile 1 5 10 15 154 15 PRT Artificial Sequence HBV POL 422 (peptide 1186.18) 154Asn Leu Ser Trp Leu Ser Leu Asp Val Ser Ala Ala Phe Tyr His 1 5 10 15 155 9 PRT Artificial Sequence HBV ENV ayw 183 (peptide 777.03) 155Phe Leu Leu Thr Arg Ile Leu Thr Ile 1 5 156 9 PRT Artificial Sequence HBV ayw pol 642 (peptide 927.15) 156Ala Leu Met Pro Leu Tyr Ala Cys Ile 1 5 157 9 PRT Artificial Sequence HBV pol 562 (peptide 927.11) 157Phe Leu Leu Ser Leu Gly Ile His Leu 1 5 158 9 PRT Artificial Sequence HBV POL 531 (peptide 1090.11) 158Ser Ala Ile Cys Ser Val Val Arg Arg 1 5 159 10 PRT Artificial Sequence HBV pol 665 (peptide 1090.10) 159Gln Ala Phe Thr Phe Ser Pro Thr Tyr Lys 1 5 10 160 9 PRT Artificial Sequence HBV pol 47 (peptide 1069.16) 160Asn Val Ser Ile Pro Trp Thr His Lys 1 5 161 10 PRT Artificial Sequence HBV pol 388 (peptide 1069.20) 161Leu Val Val Asp Phe Ser Gln Phe Ser Arg 1 5 10 162 9 PRT Artificial Sequence HBV adr POL 629 (peptide 1142.05) (peptide 1.0166) 162Lys Val Gly Asn Phe Thr Gly Leu Tyr 1 5 163 10 PRT Artificial Sequence HBV pol 150 (peptide 1069.15) 163Thr Leu Trp Lys Ala Gly Ile Leu Tyr Lys 1 5 10 164 9 PRT Artificial Sequence HBV ENV 313 (peptide 1145.04) 164Ile Pro Ile Pro Ser Ser Trp Ala Phe 1 5 165 9 PRT Artificial Sequence HBV core 19-27 (peptide 988.05) 165Leu Pro Ser Asp Phe Phe Pro Ser Val 1 5 166 10 PRT Artificial Sequence HBV POL 354 (peptide 1147.04) 166Thr Pro Ala Arg Val Thr Gly Gly Val Phe 1 5 10 167 10 PRT Artificial Sequence HBV env 338-347 (peptide 1069.06) 167Leu Leu Val Pro Phe Val Gln Trp Phe Val 1 5 10 168 10 PRT Artificial Sequence HBV POL 513 (peptide 1147.13) 168Phe Leu Leu Ala Gln Phe Thr Ser Ala Ile 1 5 10 169 11 PRT Artificial Sequence HBV ENV 259 (peptide 1147.14) 169Val Leu Leu Asp Tyr Gln Gly Met Leu Pro Val 1 5 10 170 9 PRT Artificial Sequence HBV ENV 339 (peptide 1132.01) 170Leu Val Pro Phe Val Gln Trp Phe Val 1 5 171 9 PRT Artificial Sequence HBV pol 504-512 (peptide1069.05) 171Leu Leu Ala Gln Phe Thr Ser Ala Ile 1 5 172 9 PRT Artificial Sequence HBV pol 411 (peptide 927.42) 172Asn Leu Ser Trp Leu Ser Leu Asp Val 1 5 173 9 PRT Artificial Sequence HBV pol 992 (peptide 927.41) 173Leu Leu Ser Ser Asn Leu Ser Trp Leu 1 5 174 9 PRT Artificial Sequence HBV pol 489 (peptide 927.46) 174Lys Leu His Leu Tyr Ser His Pro Ile 1 5 175 9 PRT Artificial Sequence HBV pol 503 (peptide 1069.071) 175Phe Leu Leu Ala Gln Phe Thr Ser Ala 1 5 176 9 PRT Artificial Sequence HBV ENV 62 (peptide 1142.07) 176Gly Leu Leu Gly Trp Ser Pro Gln Ala 1 5 177 9 PRT Artificial Sequence HBV ayw pol 1076 (peptide 927.47) 177His Leu Tyr Ser His Pro Ile Ile Leu 1 5 178 9 PRT Artificial Sequence HBV env 377-385 (peptide 1069.13) 178Pro Leu Leu Pro Ile Phe Phe Cys Leu 1 5 179 9 PRT Artificial Sequence HBV adr-ENV 177 (peptide 1013.1402) 179Val Leu Gln Ala Gly Phe Phe Leu Leu 1 5 180 11 PRT Artificial Sequence HBV pol 376 (peptide 26.0539) 180Arg Leu Val Val Asp Phe Ser Gln Phe Ser Arg 1 5 10 181 11 PRT Artificial Sequence HBV X nuc fus 299 (peptide 26.0535) 181Gly Val Trp Ile Arg Thr Pro Pro Ala Tyr Arg 1 5 10 182 9 PRT Artificial Sequence HBV X 64 (peptide 26.0153) 182Ser Ser Ala Gly Pro Cys Ala Leu Arg 1 5 183 9 PRT Artificial Sequence HBV adr “X” 1548 (peptide 1.0993) 183Lys Val Phe Val Leu Gly Gly Cys Arg 1 5 184 9 PRT Artificial Sequence HBV X 69 (peptide 26.0149) 184Cys Ala Leu Arg Phe Thr Ser Ala Arg 1 5 185 8 PRT Artificial Sequence HBV x nuc fus 296 (peptide 26.0023) 185Val Ser Phe Gly Val Trp Ile Arg 1 5 186 11 PRT Artificial Sequence HBV x nuc fus 318 (peptide 26.0545) 186Thr Leu Pro Glu Thr Thr Val Val Arg Arg Arg 1 5 10 187 9 PRT Artificial Sequence HBV POL 524 (peptide 20.0131) 187Ser Val Val Arg Arg Ala Phe Pro His 1 5 188 9 PRT Artificial Sequence HBV adr “X” 1550 (peptide 1.0219) 188Phe Val Leu Gly Gly Cys Arg His Lys 1 5 189 8 PRT Artificial Sequence HBV pol 656 (peptide 26.0008) 189Phe Thr Phe Ser Pro Thr Tyr Lys 1 5 190 9 PRT Artificial Sequence HBV POL 655 (peptide 20.0130) 190Ala Phe Thr Glu Ser Pro Thr Tyr Lys 1 5 191 10 PRT Artificial Sequence HBV POL 530 (peptide 1147.05) 191Phe Pro His Cys Leu Ala Phe Ser Tyr Met 1 5 10 192 9 PRT Artificial Sequence HBV POL 640 (peptide 1147.08) 192Tyr Pro Ala Leu Met Pro Leu Tyr Ala 1 5 193 9 PRT Artificial Sequence HBV X 58 (peptide 1147.06) 193Leu Pro Val Cys Ala Phe Ser Ser Ala 1 5 194 9 PRT Artificial Sequence HBV POL 429 (peptide 1147.02) 194His Pro Ala Ala Met Pro His Leu Leu 1 5 195 11 PRT Artificial Sequence HBV pol 640 (peptide 26.0570) 195Tyr Pro Ala Leu Met Pro Leu Tyr Ala Cys Ile 1 5 10 196 8 PRT Artificial Sequence HBV POL 640 (peptide 19.0014) 196Tyr Pro Ala Leu Met Pro Leu Tyr 1 5 197 9 PRT Artificial Sequence HBV POL 541 (peptide 1145.08) 197Phe Pro His Cys Leu Ala Phe Ser Tyr 1 5 198 9 PRT Artificial Sequence HBV NUC 131 (peptide 1090.02) 198Ala Tyr Arg Pro Pro Asn Ala Pro Ile 1 5 199 10 PRT Artificial Sequence HBV adr CORE 419 (peptide 1.0519) 199Asp Leu Leu Asp Thr Ala Ser Ala Leu Tyr 1 5 10 200 10 PRT Artificial Sequence HBV NUC 117 (peptide 13.0129) 200Glu Tyr Leu Val Ser Phe Gly Val Trp Ile 1 5 10 201 10 PRT Artificial Sequence HBV POL 631 (peptide 20.0254) 201Phe Ala Ala Pro Phe Thr Gln Cys Gly Tyr 1 5 10 202 9 PRT Artificial Sequence HBV ALL 1224 (peptide 2.0060) 202Gly Tyr Pro Ala Leu Met Pro Leu Tyr 1 5 203 10 PRT Artificial Sequence HBV pol 149 (peptide 1069.04) 203His Thr Leu Trp Lys Ala Gly Ile Leu Tyr 1 5 10 204 10 PRT Artificial Sequence HBV env 249-258 (peptide 1069.08) 204Ile Leu Leu Leu Cys Leu Ile Phe Leu Leu 1 5 10 205 9 PRT Artificial Sequence HBV POL 745 (peptide 1069.23) 205Lys Tyr Thr Ser Phe Pro Trp Leu Leu 1 5 206 9 PRT Artificial Sequence HBV core 59 (peptide 1069.01) 206Leu Leu Asp Thr Ala Ser Ala Leu Tyr 1 5 207 10 PRT Artificial Sequence HBV ALL 1000 (peptide 2.0239) 207Leu Ser Leu Asp Val Ser Ala Ala Phe Tyr 1 5 10 208 10 PRT Artificial Sequence HBV POL 492 (peptide 2.0181) 208Leu Tyr Ser His Pro Ile Ile Leu Gly Phe 1 5 10 209 10 PRT Artificial Sequence HBV 360 (peptide 1039.01) 209Met Met Trp Tyr Trp Gly Pro Ser Leu Tyr 1 5 10 210 9 PRT Artificial Sequence HBV adr 1521 (peptide 2.0126) 210Met Ser Thr Thr Asp Leu Glu Ala Tyr 1 5 211 10 PRT Artificial Sequence HBV pol 124 (peptide 1069.03) 211Pro Leu Asp Lys Gly Ile Lys Pro Tyr Tyr 1 5 10 212 9 PRT Artificial Sequence HBV pol 808 (peptide 1090.09) 212Pro Thr Thr Gly Arg Thr Ser Leu Tyr 1 5 213 9 PRT Artificial Sequence HBV POL 51 (peptide 20.0138) 213Pro Trp Thr His Lys Val Gly Asn Phe 1 5 214 9 PRT Artificial Sequence HBV ENV 236 (peptide 20.0135) 214Arg Trp Met Cys Leu Arg Arg Phe Ile 1 5 215 10 PRT Artificial Sequence HBV ENV 236 (peptide 20.0269) 215Arg Trp Met Cys Leu Arg Arg Phe Ile Ile 1 5 10 216 9 PRT Artificial Sequence HBV POL 167 (peptide 20.0139) 216Ser Phe Cys Gly Ser Pro Tyr Ser Trp 1 5 217 9 PRT Artificial Sequence HBV pol 427 (peptide 1069.02) 217Ser Leu Asp Val Ser Ala Ala Phe Tyr 1 5 218 9 PRT Artificial Sequence HBV ENV 334 (peptide 20.0136) 218Ser Trp Leu Ser Leu Leu Val Pro Phe 1 5 219 10 PRT Artificial Sequence HBV POL 392 (peptide 20.0271) 219Ser Trp Pro Lys Phe Ala Val Pro Asn Leu 1 5 10 220 9 PRT Artificial Sequence HBV ENV 197 (peptide 20.0137) 220Ser Trp Trp Thr Ser Leu Asn Phe Leu 1 5 221 10 PRT Artificial Sequence HBV POL 4 (peptide 2.0173) 221Ser Tyr Gln His Phe Arg Lys Leu Leu Leu 1 5 10 222 9 PRT Artificial Sequence HBV NUC 102 (peptide 13.0073) 222Trp Phe His Ile Ser Cys Leu Thr Phe 1 5 223 10 PRT Artificial Sequence HBV adr CORE 416 (peptide 1.0774) 223Trp Leu Trp Gly Met Asp Ile Asp Pro Tyr 1 5 10 224 11 PRT Artificial Sequence HBV env 359 (peptide 1039.06) 224Trp Met Met Trp Tyr Trp Gly Pro Ser Leu Tyr 1 5 10 225 10 PRT Artificial Sequence HBv 18-27 I10 var. (peptide 924.14) 225Phe Leu Pro Ser Asp Phe Phe Pro Ser Ile 1 5 10 226 10 PRT Artificial Sequence HBc 18-27 analog (peptide 941.01) 226Phe Leu Pro Ser Asp Tyr Phe Pro Ser Val 1 5 10 227 11 PRT Artificial Sequence HBV core 141-151 analog (peptide 1083.02) 227Ser Thr Leu Pro Glu Thr Tyr Val Val Arg Arg 1 5 10 228 9 PRT Artificial Sequence HBV ENV 313 analog (peptide 1145.05) 228Phe Pro Ile Pro Ser Ser Trp Ala Phe 1 5 229 9 PRT Artificial Sequence HBV POL 541 analog (peptide 1145.11) 229Phe Pro His Cys Leu Ala Phe Ser Leu 1 5 230 9 PRT Artificial Sequence HBV POL 541 analog (peptide 1145.24) 230Phe Pro His Cys Leu Ala Phe Ala Leu 1 5 231 9 PRT Artificial Sequence HBV ENV 313 analog (peptide 1145.06) 231Ile Pro Ile Thr Ser Ser Trp Ala Phe 1 5 232 9 PRT Artificial Sequence HBV ENV 313 analog (peptide 1145.23) 232Ile Pro Ile Pro Met Ser Trp Ala Phe 1 5 233 9 PRT Artificial Sequence HBV ENV 313 analog (peptide 1145.07) 233Ile Pro Ile Leu Ser Ser Trp Ala Phe 1 5 234 9 PRT Artificial Sequence HBV POL 541 analog (peptide 1145.09) 234Phe Pro Val Cys Leu Ala Phe Ser Tyr 1 5 235 9 PRT Artificial Sequence HBV POL 541 analog (peptide 1145.10) 235Phe Pro His Cys Leu Ala Phe Ala Tyr 1 5 236 26 PRT Artificial Sequence HCV NS3 1242-1267 236Ala Ala Tyr Ala Ala Gln Gly Tyr Lys Val Leu Val Leu Asn Pro Ser 1 5 10 15Val Ala Ala Thr Leu Gly Phe Gly Ala Tyr 20 25 237 20 PRT Artificial Sequence HCV NS3 1242 (peptide P98.03) 237Ala Ala Tyr Ala Ala Gln Gly Tyr Lys Val Leu Val Leu Asn Pro Ser 1 5 10 15Val Ala Ala Thr 20 238 20 PRT Artificial Sequence HCV NS3 1248 (peptide P98.04) 238Gly Tyr Lys Val Leu Val Leu Asn Pro Ser Val Ala Ala Thr Leu Gly 1 5 10 15Phe Gly Ala Tyr 20 239 14 PRT Artificial Sequence HCV NS3 1248 (peptide P98.05) 239Gly Tyr Lys Val Leu Val Leu Asn Pro Ser Val Ala Ala Thr 1 5 10 240 15 PRT Artificial Sequence HCV NS3 1253 (peptide 1283.21) 240Gly Tyr Lys Val Leu Val Leu Asn Pro Ser Val Ala Ala Thr Leu 1 5 10 15 241 15 PRT Artificial Sequence HCV NS3 1251 (peptide 1283.20) 241Ala Gln Gly Tyr Lys Val Leu Val Leu Asn Pro Ser Val Ala Ala 1 5 10 15 242 22 PRT Artificial Sequence HCV NS4 1914-1935 242Gly Glu Gly Ala Val Gln Trp Met Asn Arg Leu Ile Ala Phe Ala Ser 1 5 10 15Arg Gly Asn His Val Ser 20 243 21 PRT Artificial Sequence HCV NS4 1914 (peptide F134.08) 243Gly Glu Gly Ala Val Gln Trp Met Asn Arg Leu Ile Ala Phe Ala Ser 1 5 10 15Arg Gly Asn His Val 20 244 15 PRT Artificial Sequence HCV NS4 1921 (peptide 1283.44) 244Met Asn Arg Leu Ile Ala Phe Ala Ser Arg Gly Asn His Val Ser 1 5 10 15 245 15 PRT Artificial Sequence HCV NS3 1025 (peptide 1283.16) 245Ser Lys Gly Trp Arg Leu Leu Ala Pro Ile Thr Ala Tyr Ala Gln 1 5 10 15 246 15 PRT Artificial Sequence HCV NS5 2641 (peptide 1283.55) 246Gly Ser Ser Tyr Gly Phe Gln Tyr Ser Pro Gly Gln Arg Val Glu 1 5 10 15 247 20 PRT Artificial Sequence HCV NS4 1772 (peptide F134.05) 247Asn Phe Ile Ser Gly Ile Gln Tyr Leu Ala Gly Leu Ser Thr Leu Pro 1 5 10 15Gly Asn Pro Ala 20 248 15 PRT Artificial Sequence HCV NS5 2939 (peptide 1283.61) 248Ala Ser Cys Leu Arg Lys Leu Gly Val Pro Pro Leu Arg Val Trp 1 5 10 15 249 15 PRT Artificial Sequence HCV NS3 1393 (peptide 1283.25) 249Gly Arg His Leu Ile Phe Cys His Ser Lys Lys Lys Cys Asp Glu 1 5 10 15 250 15 PRT Artificial Sequence HCV 1466 (peptide 35.0107) 250Thr Val Asp Phe Ser Leu Asp Pro Thr Phe Thr Ile Glu Thr Thr 1 5 10 15 251 15 PRT Artificial Sequence HCV 1437 (peptide 35.0106) 251Val Val Val Val Ala Thr Asp Ala Leu Met Thr Gly Tyr Thr Gly 1 5 10 15 252 9 PRT Artificial Sequence HCV NS1/E2 728 (peptide 1090.18) 252Phe Leu Leu Leu Ala Asp Ala Arg Val 1 5 253 10 PRT Artificial Sequence HCV NS4 1812 (peptide 1073.05) 253Leu Leu Phe Asn Ile Leu Gly Gly Trp Val 1 5 10 254 9 PRT Artificial Sequence HCV NS3 1590 (peptide 1013.02) 254Tyr Leu Val Ala Tyr Gln Ala Thr Val 1 5 255 9 PRT Artificial Sequence HCV Core 132 (peptide 1013.1002) 255Asp Leu Met Gly Tyr Ile Pro Leu Val 1 5 256 10 PRT Artificial Sequence HCV NS5 2611 (peptide 1090.22) 256Arg Leu Ile Val Phe Pro Asp Leu Gly Val 1 5 10 257 9 PRT Artificial Sequence HCV NS4 1666 (peptide 24.0075) 257Val Leu Val Gly Gly Val Leu Ala Ala 1 5 258 9 PRT Artificial Sequence HCV NS4 1920 (peptide 24.0073) 258Trp Met Asn Arg Leu Ile Ala Phe Ala 1 5 259 9 PRT Artificial Sequence HCV NS4 1769 (peptide 1174.08) 259His Met Trp Asn Phe Ile Ser Gly Ile 1 5 260 9 PRT Artificial Sequence HCV NS4 1851 (peptide 1073.06) 260Ile Leu Ala Gly Tyr Gly Ala Gly Val 1 5 261 9 PRT Artificial Sequence HCV NS1/E2 726 (peptide 24.0071) 261Leu Leu Phe Leu Leu Leu Ala Asp Ala 1 5 262 10 PRT Artificial Sequence HCV Core 35 (peptide 1073.07) 262Tyr Leu Leu Pro Arg Arg Gly Pro Arg Leu 1 5 10 263 9 PRT Artificial Sequence HCV NS3 1136 (peptide 1.0119) 263Tyr Leu Val Thr Arg His Ala Asp Val 1 5 264 9 PRT Artificial Sequence HCV Core 51 (peptide 1.0952) 264Lys Thr Ser Glu Arg Ser Gln Pro Arg 1 5 265 10 PRT Artificial Sequence HCV NS4 1863 (peptide 1073.10) 265Gly Val Ala Gly Ala Leu Val Ala Phe Lys 1 5 10 266 9 PRT Artificial Sequence HCV NS3 1391 (peptide 1.0123) 266Leu Ile Phe Cys His Ser Lys Lys Lys 1 5 267 9 PRT Artificial Sequence HCV E1 290 (peptide 1.0955) 267Gln Leu Phe Thr Phe Ser Pro Arg Arg 1 5 268 9 PRT Artificial Sequence HCV Core 43 (peptide 1073.11) 268Arg Leu Gly Val Arg Ala Thr Arg Lys 1 5 269 10 PRT Artificial Sequence HCV NS1/E2 635 (peptide 1073.13) 269Arg Met Tyr Val Gly Gly Val Glu His Arg 1 5 10 270 9 PRT Artificial Sequence HCV NS4 1864 (peptide 24.0090) 270Val Ala Gly Ala Leu Val Ala Phe Lys 1 5 271 9 PRT Artificial Sequence HCV NS5 3036 (peptide F104.01) 271Val Gly Ile Tyr Leu Leu Pro Asn Arg 1 5 272 9 PRT Artificial Sequence HCV Core 168 (peptide 1145.12) 272Leu Pro Gly Cys Ser Phe Ser Ile Phe 1 5 273 8 PRT Artificial Sequence HCV 1378 (peptide 29.0035) 273Ile Pro Phe Tyr Gly Lys Ala Ile 1 5 274 9 PRT Artificial Sequence HCV NS3 1128 (peptide 1069.62) 274Cys Thr Cys Gly Ser Ser Asp Leu Tyr 1 5 275 9 PRT Artificial Sequence HCV NS4 1765 (peptide 24.0092) 275Phe Trp Ala Lys His Met Trp Asn Phe 1 5 276 9 PRT Artificial Sequence HCV NS5 2922 (peptide 13.0019) 276Leu Ser Ala Phe Ser Leu His Ser Tyr 1 5 277 9 PRT Artificial Sequence HCV NS3 1267 (peptide 24.0086) 277Leu Gly Phe Gly Ala Tyr Met Ser Lys 1 5 278 9 PRT Artificial Sequence HCV NS5 2621 (peptide 1174.21) 278Arg Val Cys Glu Lys Met Ala Leu Tyr 1 5 279 9 PRT Artificial Sequence HCV NS1/E2 557 (peptide 1174.16) 279Trp Met Asn Ser Thr Gly Phe Thr Lys 1 5 280 10 PRT Artificial Sequence HCV NS3 1622 (peptide 1073.04) 280Thr Leu His Gly Pro Thr Pro Leu Leu Tyr 1 5 10 281 9 PRT Artificial Sequence HCV NS3 1588 (peptide 16.0012) 281Phe Pro Tyr Leu Val Ala Tyr Gln Ala 1 5 282 9 PRT Artificial Sequence HCV NS1/E2 623 (peptide 15.0047) 282Tyr Pro Cys Thr Val Asn Phe Thr Ile 1 5 283 10 PRT Artificial Sequence HCV NS5 2129 (peptide 24.0093) 283Glu Val Asp Gly Val Arg Leu His Arg Tyr 1 5 10 284 11 PRT Artificial Sequence HCV 126 (peptide 3.0417) 284Leu Thr Cys Gly Phe Ala Asp Leu Met Gly Tyr 1 5 10 285 9 PRT Artificial Sequence HCV E1 700 (peptide 1073.01) 285Asn Ile Val Asp Val Gln Tyr Leu Tyr 1 5 286 10 PRT Artificial Sequence HCV NS5 2921 (peptide 1.0509) 286Gly Leu Ser Ala Phe Ser Leu His Ser Tyr 1 5 10 287 11 PRT Artificial Sequence HCV E1 275 (peptide 1073.17) 287Met Tyr Val Gly Asp Leu Cys Gly Ser Val Phe 1 5 10 288 10 PRT Artificial Sequence HCV NS1/E2 633 (peptide 1073.18) 288Met Tyr Val Gly Gly Val Glu His Arg Leu 1 5 10 289 9 PRT Artificial Sequence HCV NS4 1778 (peptide 13.075) 289Gln Tyr Leu Ala Gly Leu Ser Thr Leu 1 5 290 9 PRT Artificial Sequence HCV Core 168 (peptide 1145.13) 290Phe Pro Gly Cys Ser Phe Ser Ile Phe 1 5 291 9 PRT Artificial Sequence HCV Core 168 (peptide 1145.25) 291Leu Pro Gly Cys Met Phe Ser Ile Phe 1 5 292 9 PRT Artificial Sequence HCV Core 169 (peptide 1292.24) 292Leu Pro Gly Cys Ser Phe Ser Ile Ile 1 5 293 9 PRT Artificial Sequence HCV Core 168 (peptide 1145.14) 293Leu Pro Val Cys Ser Phe Ser Ile Phe 1 5 294 9 PRT Artificial Sequence HCV Core 168 (peptide 1145.15) 294Leu Pro Gly Cys Ser Phe Ser Tyr Phe 1 5 295 26 PRT Artificial Sequence HIV1 GAG 294-319 295Gly Glu Ile Tyr Lys Arg Trp Ile Ile Leu Gly Leu Asn Lys Ile Val 1 5 10 15Arg Met Tyr Ser Pro Thr Ser Ile Leu Asp 20 25 296 22 PRT Artificial Sequence HIV gag 298-319 296Lys Arg Trp Ile Ile Leu Gly Leu Asn Lys Ile Val Arg Met Tyr Ser 1 5 10 15Pro Thr Ser Ile Leu Asp 20 297 15 PRT Artificial Sequence HIV1 GAG 298 (peptide 27.0313) 297Lys Arg Trp Ile Ile Leu Gly Leu Asn Lys Ile Val Arg Met Tyr 1 5 10 15 298 15 PRT Artificial Sequence HIV1 GAG 294 (peptide 27.0311) 298Gly Glu Ile Tyr Lys Arg Trp Ile Ile Leu Gly Leu Asn Lys Ile 1 5 10 15 299 15 PRT Artificial Sequence HIV1 POL 596 (peptide 27.0354) 299Trp Glu Phe Val Asn Thr Pro Pro Leu Val Lys Leu Trp Tyr Gln 1 5 10 15 300 15 PRT Artificial Sequence HIV1 POL 956 (peptide 27.0377) 300Gln Lys Gln Ile Thr Lys Ile Gln Asn Phe Arg Val Tyr Tyr Arg 1 5 10 15 301 16 PRT Artificial Sequence HIV1 POL 711-726 301Glu Lys Val Tyr Leu Ala Trp Val Pro Ala His Lys Gly Ile Gly Gly 1 5 10 15 302 15 PRT Artificial Sequence HIV POL 712 (peptide 1280.03) 302Lys Val Tyr Leu Ala Trp Val Pro Ala His Lys Gly Ile Gly Gly 1 5 10 15 303 15 PRT Artificial Sequence HIV1 POL 711 (peptide 27.0361) 303Glu Lys Val Tyr Leu Ala Trp Val Pro Ala His Lys Gly Ile Gly 1 5 10 15 304 22 PRT Artificial Sequence HIV1 gag 165-186 304Pro Ile Val Gln Asn Ile Gln Gly Gln Met Val His Gln Ala Ile Ser 1 5 10 15Pro Arg Thr Leu Asn Ala 20 305 15 PRT Artificial Sequence HIV1 GAG 171 (peptide 27.0304) 305Gln Gly Gln Met Val His Gln Ala Ile Ser Pro Arg Thr Leu Asn 1 5 10 15 306 15 PRT Artificial Sequence HIV1 ENV 729 (peptide 27.0297) 306Gln His Leu Leu Gln Leu Thr Val Trp Gly Ile Lys Gln Leu Gln 1 5 10 15 307 15 PRT Artificial Sequence HIV1 POL 335 (peptide 27.0344) 307Ser Pro Ala Ile Phe Gln Ser Ser Met Thr Lys Ile Leu Glu Pro 1 5 10 15 308 16 PRT Artificial Sequence HIV1 ENV 566 (peptide F091.15) 308Ile Lys Gln Phe Ile Asn Met Trp Gln Glu Val Gly Lys Ala Met Tyr 1 5 10 15 309 15 PRT Artificial Sequence HIV1 POL 303 (peptide 27.0341) 309Phe Arg Lys Tyr Thr Ala Phe Thr Ile Pro Ser Ile Asn Asn Glu 1 5 10 15 310 15 PRT Artificial Sequence HIV1 POL 758 (peptide 27.0364) 310His Ser Asn Trp Arg Ala Met Ala Ser Asp Phe Asn Leu Pro Pro 1 5 10 15 311 15 PRT Artificial Sequence HIV1 POL 915 (peptide 27.0373) 311Lys Thr Ala Val Gln Met Ala Val Phe Ile His Asn Phe Lys Arg 1 5 10 15 312 22 PRT Artificial Sequence HIV GAG 245 312Asp Arg Val His Pro Val His Ala Gly Pro Ile Ala Pro Gly Gln Met 1 5 10 15Arg Glu Pro Arg Gly Ser 20 313 26 PRT Artificial Sequence HIV gag 195-220 313Ala Phe Ser Pro Glu Val Ile Pro Met Phe Ser Ala Leu Ser Glu Gly 1 5 10 15Ala Thr Pro Gln Asp Leu Asn Thr Met Leu 20 25 314 22 PRT Artificial Sequence HIV gag 195-216 314Ala Phe Ser Pro Glu Val Ile Pro Met Phe Ser Ala Leu Ser Glu Gly 1 5 10 15Ala Thr Pro Gln Asp Leu 20 315 16 PRT Artificial Sequence HIV gag 205 (peptide 200.06) 315Ser Ala Leu Ser Glu Gly Ala Thr Pro Gln Asp Leu Asn Thr Met Leu 1 5 10 15 316 15 PRT Artificial Sequence HIV gag 197 (peptide 27.0307) 316Ser Pro Glu Val Ile Pro Met Phe Ser Ala Leu Ser Glu Gly Ala 1 5 10 15 317 22 PRT Artificial Sequence HIV gag 275 317Leu Gln Glu Gln Ile Gly Trp Met Thr Asn Asn Pro Pro Ile Pro Val 1 5 10 15Gly Glu Ile Tyr Lys Arg 20 318 15 PRT Artificial Sequence HIV gag 276 (peptide 27.0310) 318Gln Glu Gln Ile Gly Trp Met Thr Asn Asn Pro Pro Ile Pro Val 1 5 10 15 319 15 PRT Artificial Sequence HIV VPU 31 (peptide 35.0135) 319Tyr Arg Lys Ile Leu Arg Gln Arg Lys Ile Asp Arg Leu Ile Asp 1 5 10 15 320 15 PRT Artificial Sequence HIV POL 874 (peptide 35.0131) 320Trp Ala Gly Ile Lys Gln Glu Phe Gly Ile Pro Tyr Asn Pro Gln 1 5 10 15 321 15 PRT Artificial Sequence HIV POL 674 (peptide 35.0127) 321Glu Val Asn Ile Val Thr Asp Ser Gln Tyr Ala Leu Gly Ile Ile 1 5 10 15 322 15 PRT Artificial Sequence HIV POL 619 (peptide 35.0125) 322Ala Glu Thr Phe Tyr Val Asp Gly Ala Ala Asn Arg Glu Thr Lys 1 5 10 15 323 15 PRT Artificial Sequence HIV POL 989 (peptide 35.0133) 323Gly Ala Val Val Ile Gln Asp Asn Ser Asp Ile Lys Val Val Pro 1 5 10 15 324 10 PRT Artificial Sequence HIV1 POL 70 (peptide 25.0148) 324Met Ala Ser Asp Phe Asn Leu Pro Pro Val 1 5 10 325 9 PRT Artificial Sequence HIV gag 397 (peptide 1069.32) 325Val Leu Ala Glu Ala Met Ser Gln Val 1 5 326 9 PRT Artificial Sequence HIV1 POL 87 (peptide 25.0062) 326Lys Leu Val Gly Lys Leu Asn Trp Ala 1 5 327 9 PRT Artificial Sequence HIV1 NEF 62 (peptide 25.0039) 327Leu Thr Phe Gly Trp Cys Phe Lys Leu 1 5 328 9 PRT Artificial Sequence HIV1 GAG 34 (peptide 25. 0035) 328Met Thr Asn Asn Pro Pro Ile Pro Val 1 5 329 9 PRT Artificial Sequence HIV1 VPR 72 (peptide 25.0057) 329Arg Ile Leu Gln Gln Leu Leu Phe Ile 1 5 330 9 PRT Artificial Sequence HIV POL 1434 (peptide 1.0944) 330Ala Val Phe Ile His Asn Phe Lys Arg 1 5 331 10 PRT Artificial Sequence HIV POL 1474 (peptide 1.1056) 331Lys Ile Gln Asn Phe Arg Val Tyr Tyr Arg 1 5 10 332 10 PRT Artificial Sequence HIV pol 1432 (peptide 1069.49) 332Gln Met Ala Val Phe Ile His Asn Phe Lys 1 5 10 333 9 PRT Artificial Sequence HIV pol 337 (peptide 966.0102) 333Ala Ile Phe Gln Ser Ser Met Thr Lys 1 5 334 9 PRT Artificial Sequence HIV pol 909 (peptide 1150.14) 334Met Ala Val Phe Ile His Asn Phe Lys 1 5 335 10 PRT Artificial Sequence HIV nef 73-82 (peptide 940.03) 335Gln Val Pro Leu Arg Pro Met Thr Tyr Lys 1 5 10 336 10 PRT Artificial Sequence HIV1 ENV 81 (peptide 25.0175) 336Thr Thr Leu Phe Cys Ala Ser Asp Ala Lys 1 5 10 337 10 PRT Artificial Sequence HIV POL 65 (peptide 25.0209) 337Val Thr Ile Lys Ile Gly Gly Gln Leu Lys 1 5 10 338 9 PRT Artificial Sequence HIV nef 84-92 (peptide 1146.01) 338Phe Pro Val Arg Pro Gln Val Pro Leu 1 5 339 9 PRT Artificial Sequence HIV env 293 (peptide 29.0060) 339Ile Pro Ile His Tyr Cys Ala Pro Ala 1 5 340 9 PRT Artificial Sequence HIV POL 171 (peptide 15.0073) 340Phe Pro Ile Ser Pro Ile Glu Thr Val 1 5 341 9 PRT Artificial Sequence HIV env 285 (peptide 29.0056) 341Cys Pro Lys Val Ser Phe Glu Pro Ile 1 5 342 11 PRT Artificial Sequence HIV pol 883 (peptide 29.0107) 342Ile Pro Tyr Asn Pro Gln Ser Gln Gly Val Val 1 5 10 343 10 PRT Artificial Sequence HIV1 POL 96 (peptide 25.0151) 343Cys Thr Leu Asn Phe Pro Ile Ser Pro Ile 1 5 10 344 10 PRT Artificial Sequence HIV1 NEF 62 (peptide 25.0143) 344Leu Thr Pro Gly Trp Cys Phe Lys Leu Val 1 5 10 345 9 PRT Artificial Sequence HIV1 POL 83 (peptide 25.0043) 345Tyr Thr Ala Phe Thr Ile Pro Ser Ile 1 5 346 9 PRT Artificial Sequence HIV1 VPR 76 (peptide 25.0055) 346Ala Ile Ile Arg Ile Leu Gln Gln Leu 1 5 347 9 PRT Artificial Sequence HIV1 POL 52 (peptide 25.0049) 347Ala Leu Val Glu Ile Cys Thr Glu Met 1 5 348 9 PRT Artificial Sequence HIV1 ENV 61 (peptide 25.0032) 348Leu Leu Gln Leu Thr Val Trp Gly Ile 1 5 349 9 PRT Artificial Sequence HIV1 POL 100 (peptide 25.0050) 349Leu Val Gly Pro Thr Pro Val Asn Ile 1 5 350 9 PRT Artificial Sequence HIV1 POL 65 (peptide 25.0047) 350Lys Ala Ala Cys Trp Trp Ala Gly Ile 1 5 351 10 PRT Artificial Sequence HIV1 POL 96 (peptide 25.0162) 351Lys Met Ile Gly Gly Ile Gly Gly Phe Ile 1 5 10 352 9 PRT Artificial Sequence HIV1 POL 78 (peptide 25.0052) 352Arg Ala Met Ala Ser Asp Phe Asn Leu 1 5 353 10 PRT Artificial Sequence HIV ENV 814 (peptide 1211.09) 353Ser Leu Leu Asn Ala Thr Asp Ile Ala Val 1 5 10 354 9 PRT Artificial Sequence HIV1 POL 96 (peptide 25.0041) 354Thr Leu Asn Phe Pro Ile Ser Pro Ile 1 5 355 9 PRT Artificial Sequence HIV POL 1075 (peptide 1.0046) 355Ile Val Ile Trp Gly Lys Thr Pro Lys 1 5 356 9 PRT Artificial Sequence HIV1 GAG 45 (peptide 25.0064) 356Met Val His Gln Ala Ile Ser Pro Arg 1 5 357 9 PRT Artificial Sequence HIV POL 1227 (peptide 1.0062) 357Tyr Leu Ala Trp Val Pro Ala His Lys 1 5 358 9 PRT Artificial Sequence HIV POL 859 (peptide 1.0942) 358Met Thr Lys Ile Leu Glu Pro Phe Arg 1 5 359 10 PRT Artificial Sequence HIV1 GAG 45 (peptide 25.0184) 359Gln Met Val His Gln Ala Ile Ser Pro Arg 1 5 10 360 10 PRT Artificial Sequence HIV pol 1434 (peptide 1069.48) 360Ala Val Phe Ile His Asn Phe Lys Arg Lys 1 5 10 361 9 PRT Artificial Sequence HIV pol 1358 (peptide 1069.44) 361Lys Leu Ala Gly Arg Trp Pro Val Lys 1 5 362 11 PRT Artificial Sequence HIV pol 1225 (peptide 1069.42) 362Lys Val Tyr Leu Ala Trp Val Pro Ala His Lys 1 5 10 363 9 PRT Artificial Sequence HIV pol 752 (peptide 1.0024) 363Asn Thr Pro Val Phe Ala Ile Lys Lys 1 5 364 9 PRT Artificial Sequence HIV1 ENV 53 (peptide 25.0062) 364Arg Ile Val Glu Leu Leu Gly Arg Arg 1 5 365 9 PRT Artificial Sequence HIV1 POL 65 (peptide 25.0095) 365Thr Ile Lys Ile Gly Gly Gln Leu Lys 1 5 366 9 PRT Artificial Sequence HIV1 ENV 82 (peptide 25.0078) 366Thr Leu Phe Cys Ala Ser Asp Ala Lys 1 5 367 9 PRT Artificial Sequence HIV1 VIF 83 (peptide 25.0104) 367Val Met Ile Val Trp Gln Val Asp Arg 1 5 368 11 PRT Artificial Sequence HIV env 48 (peptide 1069.47) 368Val Thr Val Tyr Tyr Gly Val Pro Val Trp Lys 1 5 10 369 10 PRT Artificial Sequence HIV GAG 507 (peptide 15.0268) 369Tyr Pro Leu Ala Ser Leu Arg Ser Leu Phe 1 5 10 370 9 PRT Artificial Sequence HIV GAG 248 (peptide 1292.13) 370His Pro Val His Ala Gly Pro Ile Ala 1 5 371 8 PRT Artificial Sequence HIV con. REV 71 (peptide 19.0044) 371Val Pro Leu Gln Leu Pro Pro Leu 1 5 372 10 PRT Artificial Sequence HIV POL 1187 (peptide 1.0431) 372Glu Val Asn Ile Val Thr Asp Ser Gln Tyr 1 5 10 373 9 PRT Artificial Sequence HIV GAG 298 (peptide 1.0014) 373Phe Arg Asp Tyr Val Asp Arg Phe Tyr 1 5 374 9 PRT Artificial Sequence HIV1 ENV 69 (peptide 25.0113) 374Ile Trp Gly Cys Ser Gly Lys Leu Ile 1 5 375 9 PRT Artificial Sequence HIV1 VPR 92 (peptide 25.0127) 375Ile Tyr Glu Thr Tyr Gly Asp Thr Trp 1 5 376 9 PRT Artificial Sequence HIV pol 1036 (peptide 1069.60) 376Ile Tyr Gln Glu Pro Phe Lys Asn Leu 1 5 377 9 PRT Artificial Sequence HIV pol 359 (peptide 2.0129) 377Ile Tyr Gln Tyr Met Asp Asp Leu Tyr 1 5 378 9 PRT Artificial Sequence HIV1 VPR 56 (peptide 25.0128) 378Pro Tyr Asn Glu Trp Thr Leu Glu Leu 1 5 379 9 PRT Artificial Sequence HIV1 POL 74 (peptide 25.0123) 379Pro Tyr Asn Thr Pro Val Phe Ala Ile 1 5 380 9 PRT Artificial Sequence HIV env 2778 (peptide 1069.57) 380Arg Tyr Leu Lys Asp Gln Gln Leu Leu 1 5 381 9 PRT Artificial Sequence HIV env 2778 (peptide 1069.58) 381Arg Tyr Leu Arg Asp Gln Gln Leu Leu 1 5 382 9 PRT Artificial Sequence HIV pol 1033 (peptide 1069.59) 382Thr Tyr Gln Ile Tyr Gln Glu Pro Phe 1 5 383 10 PRT Artificial Sequence HIV pol 358 (peptide 1069.27) 383Val Ile Tyr Gln Tyr Met Asp Asp Leu Tyr 1 5 10 384 10 PRT Artificial Sequence HIV POL 265 (peptide 1069.26) 384Val Thr Val Leu Asp Val Gly Asp Ala Tyr 1 5 10 385 9 PRT Artificial Sequence HIV1 ENV 47 (peptide 25.0115) 385Val Trp Lys Glu Ala Thr Thr Thr Leu 1 5 386 10 PRT Artificial Sequence HIV1 ENV 47 (peptide 25.0218) 386Val Trp Lys Glu Ala Thr Thr Thr Leu Phe 1 5 10 387 10 PRT Artificial Sequence HIV1 POL 96 (peptide 25.0219) 387Tyr Met Gln Ala Thr Trp Ile Pro Glu Trp 1 5 10 388 10 PRT Artificial Sequence HIV MN GP160 814(a) (peptide 1211.4) 388Ser Leu Leu Asn Ala Thr Ala Ile Ala Val 1 5 10 389 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.21) 389Ala Ile Phe Gln Arg Ser Met Thr Arg 1 5 390 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.17) 390Ala Ile Phe Gln Ser Ser Met Thr Arg 1 5 391 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.02) 391Gly Ile Phe Gln Ser Ser Met Thr Lys 1 5 392 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.03) 392Ala Ala Phe Gln Ser Ser Met Thr Lys 1 5 393 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.04) 393Ala Ile Ala Gln Ser Ser Met Thr Lys 1 5 394 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.05) 394Ala Ile Phe Ala Ser Ser Met Thr Lys 1 5 395 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.06) 395Ala Ile Phe Gln Ala Ser Met Thr Lys 1 5 396 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.07) 396Ala Ile Phe Gln Ser Ala Met Thr Lys 1 5 397 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.08) 397Ala Ile Phe Gln Ser Ser Ala Thr Lys 1 5 398 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.09) 398Ala Ile Phe Gln Ser Ser Met Ala Lys 1 5 399 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.11) 399Phe Ile Phe Gln Ser Ser Met Thr Lys 1 5 400 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.12) 400Ser Ile Phe Gln Ser Ser Met Thr Lys 1 5 401 9 PRT Artificial Sequence HIV pol 337(a) (peptide F105.16) 401Ala Ile Phe Gln Cys Ser Met Thr Lys 1 5 402 9 PRT Artificial Sequence HIV nef 84-92 analog (peptide 1145.03) 402Phe Pro Val Arg Pro Gln Phe Pro Leu 1 5 403 9 PRT Artificial Sequence HIV nef 84-92(a) (peptide 1181.03) 403Phe Pro Val Arg Pro Gln Val Pro Ile 1 5 404 9 PRT Artificial Sequence HIV GAG 248 (peptide 1292.14) 404His Pro Val His Ala Gly Pro Ile Ile 1 5 405 9 PRT Artificial Sequence HIV POL 179 (peptide 1292.09) 405Phe Pro Ile Ser Pro Ile Glu Thr Ile 1 5 406 9 PRT Artificial Sequence HIV nef 84-92 analog (peptide 1145.02) 406Phe Pro Val Thr Pro Gln Val Pro Leu 1 5 407 9 PRT Artificial Sequence HIV nef 84-92 analog (peptide 1145.22) 407Phe Pro Val Arg Met Gln Val Pro Leu 1 5 408 9 PRT Artificial Sequence HIV nef 84-92(a) (peptide 1181.04) 408Phe Pro Val Arg Pro Gln Val Pro Met 1 5 409 9 PRT Artificial Sequence HIV nef 84-92(a) (peptide 1181.01) 409Phe Pro Val Arg Pro Gln Val Pro Ala 1 5 410 9 PRT Artificial Sequence HIV nef 84-92(a) (peptide 1181.02) 410Phe Pro Val Arg Pro Gln Val Pro Val 1 5 411 9 PRT Artificial Sequence HIV nef 84-92(a) (peptide 1181.05) 411Phe Pro Val Arg Pro Gln Val Pro Phe 1 5 412 9 PRT Artificial Sequence HIV nef 84-92(a) (peptide 1181.06) 412Phe Pro Val Arg Pro Gln Val Pro Trp 1 5 413 16 PRT Artificial Sequence Pf SSP2 61 (peptide F125.04) 413Arg His Asn Trp Val Asn His Ala Val Pro Leu Ala Met Lys Leu Ile 1 5 10 15 414 15 PRT Artificial Sequence Pf SSP2 62 (peptide 1188.34) 414His Asn Trp Val Asn His Ala Val Pro Leu Ala Met Lys Leu Ile 1 5 10 15 415 15 PRT Artificial Sequence Pf EXP1 71 (peptide1188.16) 415Lys Ser Lys Tyr Lys Leu Ala Thr Ser Val Leu Ala Gly Leu Leu 1 5 10 15 416 18 PRT Artificial Sequence Pf LSA1 13 416Leu Val Asn Leu Leu Ile Phe His Ile Asn Gly Lys Ile Ile Lys Asn 1 5 10 15Ser Glu 417 17 PRT Artificial Sequence Pf LSA 13 (peptide F125.02) 417Leu Val Asn Leu Leu Ile Phe His Ile Asn Gly Lys Ile Ile Lys Asn 1 5 10 15Ser 418 15 PRT Artificial Sequence Pf LSA1 16 (peptide 27.0402) 418Leu Leu Ile Phe His Ile Asn Gly Lys Ile Ile Lys Asn Ser Glu 1 5 10 15 419 15 PRT Artificial Sequence Pf SSP2 512 (peptide 1188.32) 419Gly Leu Ala Tyr Lys Phe Val Val Pro Gly Ala Ala Thr Pro Tyr 1 5 10 15 420 15 PRT Artificial Sequence Pf CSP 410 (peptide 27.0392) 420Ser Ser Val Phe Asn Val Val Asn Ser Ser Ile Gly Leu Ile Met 1 5 10 15 421 15 PRT Artificial Sequence Pf SSP2 223 (peptide 27.0417) 421Val Lys Asn Val Ile Gly Pro Phe Met Lys Ala Val Cys Val Glu 1 5 10 15 422 15 PRT Artificial Sequence Pf CSP 2 (peptide 27.0388) 422Met Arg Lys Leu Ala Ile Leu Ser Val Ser Ser Phe Leu Phe Val 1 5 10 15 423 15 PRT Artificial Sequence Pf CSP 53 (peptide 27.0387) 423Met Asn Tyr Tyr Gly Lys Gln Glu Asn Trp Tyr Ser Leu Lys Lys 1 5 10 15 424 15 PRT Artificial Sequence Pf SSP2 494 (peptide 1188.38) 424Lys Tyr Lys Ile Ala Gly Gly Ile Ala Gly Gly Leu Ala Leu Leu 1 5 10 15 425 15 PRT Artificial Sequence Pf EXP1 82 (peptide 1188.13) 425Ala Gly Leu Leu Gly Asn Val Ser Thr Val Leu Leu Gly Gly Val 1 5 10 15 426 15 PRT Artificial Sequence Pf LSA1 94 (peptide 27.0408) 426Gln Thr Asn Phe Lys Ser Leu Leu Arg Asn Leu Gly Val Ser Glu 1 5 10 15 427 15 PRT Artificial Sequence Pf SSP2 165 (peptide 35.0171) 427Pro Asp Ser Ile Gln Asp Ser Leu Lys Glu Ser Arg Lys Leu Asn 1 5 10 15 428 15 PRT Artificial Sequence Pf SSP2 211 (peptide 35.0172) 428Lys Cys Asn Leu Tyr Ala Asp Ser Ala Trp Glu Asn Val Lys Asn 1 5 10 15 429 10 PRT Artificial Sequence Pf SSP2 14 (peptide 1167.21) 429Phe Leu Ile Phe Phe Asp Leu Phe Leu Val 1 5 10 430 9 PRT Artificial Sequence Pf CSP 425 (peptide 1167.08) 430Gly Leu Ile Met Val Leu Ser Phe Leu 1 5 431 9 PRT Artificial Sequence Pf EXP1 80 (peptide 1167.12) 431Val Leu Ala Gly Leu Leu Gly Asn Val 1 5 432 9 PRT Artificial Sequence Pf EXP1 2 (peptide 1167.13) 432Lys Ile Leu Ser Val Phe Phe Leu Ala 1 5 433 9 PRT Artificial Sequence Pf EXP1 83 (peptide 1167.10) 433Gly Leu Leu Gly Asn Val Ser Thr Val 1 5 434 10 PRT Artificial Sequence Pf CSP 7 (peptide 1167.18) 434Ile Leu Ser Val Ser Ser Phe Leu Phe Val 1 5 10 435 10 PRT Artificial Sequence Pf EXP1 91 (peptide 1167.19) 435Val Leu Leu Gly Gly Val Gly Leu Val Leu 1 5 10 436 9 PRT Artificial Sequence Pf SSP2 511 (peptide 1167.36) 436Leu Ala Cys Ala Gly Leu Ala Tyr Lys 1 5 437 9 PRT Artificial Sequence Pf LSA1 94 (peptide 1167.32) 437Gln Thr Asn Phe Lys Ser Leu Leu Arg 1 5 438 10 PRT Artificial Sequence Pf CSP 375 (peptide 1167.43) 438Val Thr Cys Gly Asn Gly Ile Gln Val Arg 1 5 10 439 9 PRT Artificial Sequence Pf EXP1 10 (peptide 1167.24) 439Ala Leu Phe Phe Ile Ile Phe Asn Lys 1 5 440 9 PRT Artificial Sequence Pf LSA 1 105 (peptide 1167.28) 440Gly Val Ser Glu Asn Ile Phe Leu Lys 1 5 441 10 PRT Artificial Sequence Pf LSA1 59 (peptide 1167.47) 441His Val Leu Ser His Asn Ser Tyr Glu Lys 1 5 10 442 10 PRT Artificial Sequence Pf SSP2 510 (peptide 1167.51) 442Leu Leu Ala Cys Ala Gly Leu Ala Tyr Lys 1 5 10 443 10 PRT Artificial Sequence Pf LSA1 11 (peptide 1167.46) 443Phe Ile Leu Val Asn Leu Leu Ile Phe His 1 5 10 444 9 PRT Artificial Sequence Pf SHEBA 77 (peptide 1101.03) 444Met Pro Leu Glu Thr Gln Leu Ala Ile 1 5 445 10 PRT Artificial Sequence Pf SSP2 539 (peptide 1167.61) 445Thr Pro Tyr Ala Gly Glu Pro Ala Pro Phe 1 5 10 446 9 PRT Artificial Sequence Pf SSP2 14 (peptide 1167.14) 446Phe Leu Ile Phe Phe Asp Leu Phe Leu 1 5 447 9 PRT Artificial Sequence Pf SSP2 230 (peptide 1167.16) 447Phe Met Lys Ala Val Cys Val Glu Val 1 5 448 9 PRT Artificial Sequence Pf SSP2 15 (peptide 1167.15) 448Leu Ile Phe Phe Asp Leu Phe Leu Val 1 5 449 9 PRT Artificial Sequence Pf SSP2 51 (peptide 1167.17) 449Leu Leu Met Asp Cys Ser Gly Ser Ile 1 5 450 9 PRT Artificial Sequence Pf EXP1 91 (peptide 1167.09) 450Val Leu Leu Gly Gly Val Gly Leu Val 1 5 451 8 PRT Artificial Sequence Pf SSP2 126 (peptide 19.0051) 451Leu Pro Tyr Gly Arg Thr Asn Leu 1 5 452 10 PRT Artificial Sequence Pf LSA1 1794 (peptide 16.0245) 452Phe Gln Asp Glu Glu Asn Ile Gly Ile Tyr 1 5 10 453 9 PRT Artificial Sequence Pf CSP 15 (peptide 16.0040) 453Phe Val Glu Ala Leu Phe Gln Glu Tyr 1 5 454 9 PRT Artificial Sequence Pf LSA1 9 (peptide 1167.54) 454Phe Tyr Phe Ile Leu Val Asn Leu Leu 1 5 455 9 PRT Artificial Sequence Pf EXP1 73 (peptide 1167.53) 455Lys Tyr Lys Leu Ala Thr Ser Val Leu 1 5 456 9 PRT Artificial Sequence Pf SSP2 8 (peptide 1167.56) 456Lys Tyr Leu Val Ile Val Phe Leu Ile 1 5 457 9 PRT Artificial Sequence Pf LSA1 1663 (peptide 15.0184) 457Leu Pro Ser Glu Asn Glu Arg Gly Tyr 1 5 458 9 PRT Artificial Sequence Pf SSP2 207 (peptide 16.0130) 458Pro Ser Asp Gly Lys Cys Asn Leu Tyr 1 5 459 9 PRT Artificial Sequence Pf LSA1 1664 (peptide 16.0077) 459Pro Ser Glu Asn Glu Arg Gly Tyr Tyr 1 5 460 9 PRT Artificial Sequence Pf SSP2 528 (peptide 1167.57) 460Pro Tyr Ala Gly Glu Pro Ala Pro Phe 1 5 461 9 PRT Artificial Sequence Pf LSA1 1671 (peptide 1167.55) 461Tyr Tyr Ile Pro His Gln Ser Ser Leu 1 5 462 9 PRT Artificial sequence HBV pol 538-546 sub (peptide 1090.77) 462Tyr Met Asp Asp Val Val Leu Gly Val 1 5 463 9 PRT Artificial sequence HIV 1 pol 87(peptide 25.0062) Lys Leu Val Gly Lys Leu Asn Trp Ala 1 5

Claims

1. An expression system which comprises a promoter operably linked to a nucleotide sequence which encodes a peptide comprising a first amino acid sequence which is a major histocompatibility (MHC) targeting sequence fused to a second amino acid sequence encoding one Class I MHC restricted CTL peptide epitope and one universal HTL peptide epitope, wherein the CTL peptide epitope is selected from the group consisting of the HIV peptides set forth as SEQ ID NOs: 101, 105, 324-412, and 463.

2. An expression system which comprises a promoter operably linked to a nucleotide sequence which encodes a peptide comprising a first amino acid sequence which is an MHC targeting sequence fused to a second amino acid sequence encoding one Class I MHC restricted CTL peptide epitope and one universal HTL peptide epitope, wherein the CTL peptide epitope is selected from the group consisting of an analog of an HIV peptide set forth as SEQ ID NOs: 101, 105, 324-412, and 463.

3. A method to induce an immune response in a subject which comprises administering to a mammalian subject an expression system, wherein the expression system comprises a promoter operably linked to a nucleotide sequence which encodes a peptide comprising a first amino acid sequence which is a major histocompatibility (MHC) targeting sequence fused to a second amino acid sequence encoding one Class I MHC restricted CTL peptide epitope and one universal HTL peptide epitope, and wherein the CTL peptide epitope is selected from the group consisting of the HIV peptides set forth as SEQ ID NOs: 101, 105, 324-412, and 463.

4. A method to induce an immune response in a subject which comprises administering to a mammalian subject an expression system, wherein the expression system comprises a promoter operably linked to a nucleotide sequence which encodes a peptide comprising a first amino acid sequence which is a major histocompatibility (MHC) targeting sequence fused to a second amino acid sequence encoding one Class I MHC restricted CTL peptide epitope and one universal HTL peptide epitope, and wherein the CTL peptide epitope is selected from the group consisting of an analog of the HIV peptides set forth as SEQ ID NOs: 101, 105, 324-412, and 463.