Leishmania antigens for use in the therapy and diagnosis of leishmaniasis

Information

  • Patent Grant
  • 6607731
  • Patent Number
    6,607,731
  • Date Filed
    Friday, May 5, 2000
    24 years ago
  • Date Issued
    Tuesday, August 19, 2003
    20 years ago
Abstract
Compositions and methods for preventing, treating and detecting leishmaniasis and stimulating immune responses in patients are disclosed. The compounds provided include polypeptides that contain at least an immunogenic portion of one or more Leishmania antigens, or a variant thereof. Vaccines and pharmaceutical compositions comprising such polypeptides, or polynucleotides encoding such polypeptides, are also provided and may be used, for example, for the prevention and therapy of leishmaniasis, as well as for the detection of Leishmania infection.
Description




TECHNICAL FIELD




The present invention relates generally to compositions and methods for preventing, treating and detecting leishmaniasis, and for stimulating immune responses in patients. The invention is more particularly related to polypeptides comprising an immunogenic portion of a Leishmania antigen or a variant thereof, and to vaccines and pharmaceutical compositions comprising one or more such polypeptides. The vaccines and pharmaceutical compositions may be used, for example, for the prevention and therapy of leishmaniasis, as well as for the detection of Leishmania infection.




BACKGROUND OF THE INVENTION




Leishmania organisms are intracellular protozoan parasites of macrophages that cause a wide range of clinical diseases in humans and domestic animals, primarily dogs. In some infections, the parasite may lie dormant for many years. In other cases, the host may develop one of a variety of forms of leishmaniasis. For example, the disease may be asymptomatic or may be manifested as subclinical visceral leishmaniasis, which is characterized by mild symptoms of malaise, diarrhea and intermittent hepatomegaly. Patients with subclinical or asymptomatic disease usually have low antibody titers, making the disease difficult to detect with standard techniques. Alternatively, leishmaniasis may be manifested as a cutaneous disease, which is a severe medical problem but is generally self-limiting, or as a highly destructive mucosal disease, which is not self-limiting. Finally, and most seriously, the disease may be manifested as an acute visceral infection involving the spleen, liver and lymph nodes, which, untreated, is generally a fatal disease. Symptoms of acute visceral leishmaniasis include hepatosplenomegaly, fever, leukopenia, anemia and hypergammaglobulinemia.




Leishmaniasis is a serious problem in much of the world, including Brazil, China, East Africa, India and areas of the Middle East. The disease is also endemic in the Mediterranean region, including southern France, Italy, Greece, Spain, Portugal and North Africa. The number of cases of leishmaniasis has increased dramatically in the last 20 years, and millions of cases of this disease now exist worldwide. About 2 million new cases are diagnosed each year, 25% of which are visceral leishmaniasis. There are, however, no vaccines or effective treatments currently available.




Accurate diagnosis of leishmaniasis is frequently difficult to achieve. There are 20 species of Leishmania that infect humans, including


L. donovani, L. chagasi, L. infantum, L. major, L. amazonensis, L. braziliensis, L. panamensis, L. mexicana, L. tropica


, and


L. guyanensis


, and there are no distinctive signs or symptoms that unambiguously indicate the presence of Leishmania infection. Parasite detection methods have been used, but such methods are neither sensitive nor clinically practical. Current skin tests typically use whole or lysed parasites. Such tests are generally insensitive, irreproducible and prone to cross-reaction with a variety of other diseases. In addition, the preparations employed in such tests are often unstable. Thus, there is a need for improved methods for the detection of Leishmania infection.




Current experimental vaccines consisting of whole organisms have not proven effective in humans. Accordingly, there remains a need in the art for vaccines to prevent leishmaniasis in humans and dogs, and for improved therapeutic compositions for the treatment of leishmaniasis.




SUMMARY OF THE INVENTION




Briefly stated, the present invention provides compositions and methods for preventing, treating and detecting leishmaniasis, as well as for stimulating immune responses in patients. In one aspect, polypeptides are provided which comprise at least an immunogenic portion of a Leishmania antigen, or a variant of such an antigen that differs only in conservative substitutions and/or modifications. In specific embodiments of the invention, the Leishmania antigen comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 2, 4, 20, 22, 24, 26, 36-38, 41, 50-53, 82 and 104. DNA sequences encoding the above polypeptides, recombinant expression vectors comprising these DNA sequences and host cells transformed or transfected with such expression vectors are also provided.




In further aspects, the present invention provides fusion proteins comprising Leishmania antigens, together with polynucleotides encoding such fusion proteins. In certain specific embodiments, such fusion proteins comprise an amino acid sequence selected from the group consisting of SEQ ID NOs: 95, 96, and 97 and encoded by a polynucleotide sequence selected from the group consisting of SEQ ID NOs: 94, 98, 99, 100, and 101.




In related aspects, the present invention provides pharmaceutical compositions which comprise one or more of the polypeptides and/or fusion proteins described herein, or a polynucleotide encoding such polypeptides and fusion proteins, and a physiologically acceptable carrier. Vaccines which comprise one or more such polypeptides, fusion proteins or polynucleotides, together with an immunostimulant are also provided. In specific embodiments of these aspects, the Leishmania antigen has an amino acid sequence selected from the group consisting of SEQ ID NO: 2, 4, 20, 22, 24, 26, 36-38, 41, 50-53, 82, 104, 106, 108, 110 and 112.




In still further related embodiments, the pharmaceutical compositions and vaccines comprise at least two different polypeptides, each polypeptide comprising an immunogenic portion of a Leishmania antigen having an amino acid sequence selected from the group consisting of sequences recited in SEQ ID NO: 2, 4, 6, 8, 10, 20, 22, 24, 26, 36-38, 41, 50-53, 82, 104, 106, 108, 110 and 112, and variants thereof that differ only in conservative substitutions and/or modifications. In other embodiments, the inventive pharmaceutical compositions comprise one or more of the inventive polypeptides in combination with a known Leishmania antigen.




In yet other related embodiments, the pharmaceutical compositions and vaccines comprise soluble Leishmania antigens.




In another aspect, the present invention provides methods for inducing protective immunity against leishmaniasis in a patient, comprising administering to a patient a pharmaceutical composition or vaccine as described above.




In further aspects, methods and diagnostic kits are provided for detecting Leishmania infection in a patient. The methods comprise: (a) contacting dermal cells of a patient with a pharmaceutical composition as described above; and (b) detecting an immune response on the patient's skin, therefrom detecting Leishmania infection in the patient. The diagnostic kits comprise: (a) a pharmaceutical composition as described above; and (b) an apparatus sufficient to contact the pharmaceutical composition with the dermal cells of a patient.




In further aspects, the present invention provides methods for stimulating a cellular and/or humoral immune response in a patient, comprising administering to a patient a pharmaceutical composition or vaccine as described above.




In a related aspect, methods are provided for treating a patient afflicted with a disease responsive to IL-12 stimulation, comprising administering to a patient a pharmaceutical composition or vaccine as described above.




These and other aspects of the present invention will become apparent upon reference to the following detailed description and attached drawings. All references disclosed herein are hereby incorporated by reference in their entirety as if each was incorporated individually.











BRIEF DESCRIPTION OF THE DRAWINGS





FIG. 1

shows the stimulation of proliferation of T-cells obtained from


L. donovani


-immunized BALB/c mice (represented by stimulation index) by


L. donovani


-infected macrophages after incubation for 24, 48 and 72 hours.





FIG. 2

illustrates representative HPLC profiles of peptides isolated from MHC class II molecules of P388D1 macrophages. Panel A shows peptides isolated from uninfected macrophages and panel B shows peptides isolated from


L. donovani


infected macrophages. The arrows in panel B indicate peptide peaks present only in the infected macrophage preparation.





FIG. 3

illustrates the expression and purification of the Leishmania antigen Ldp23 as a recombinant fusion protein. Panel A shows a Coomassie blue-stained SDS-PAGE gel of lysed


E. coli


without (lane 1) and with (lane 2) IPTG induction of Ldp23 expression. Arrow indicates the recombinant fusion protein. Panel B shows the fusion protein following excision from a preparative SDS-PAGE gel, electroelution, dialysis against PBS and analytical SDS-PAGE.





FIG. 4

presents a Northern blot analysis of total RNA prepared from


L. donovani, L. major, L. amazonensis


and


L. pifanoi


with a


32


P labeled Ldp23 gene. 1, 2 and 3 refer to RNA obtained from promastigotes at the logarithmic growth phase, promastigotes at the stationary growth phase and amastigote forms, respectively.





FIG. 5

shows a Western blot analysis of


L. donovani


promastigote antigens incubated with pre-immune rabbit serum (lane A) or with anti-Ldp23 rabbit antiserum (lane B).





FIG. 6

illustrates the surface expression of Ldp23 on live


L. donovani


promastigotes. The dotted line shows the indirect immunofluorescence performed using pre-immune mouse serum and the solid line shows the result obtained with mouse anti-GST-Ldp23 antiserum. Fluorescence intensity was analyzed by FACScan.





FIG. 7

shows the stimulation of Leishmania-specific T-cell proliferation by Ldp23. The results are presented as relative cell number as a function of fluorescence intensity. T-cells (10


5


/well) were purified from lymph nodes of BALB/c mice immunized in the foot pad with


L. donovani


promastigotes in CFA and were cultured with various concentrations of the purified recombinant Ldp23 in the presence of 2×10


5


Mitomycin C-treated normal BALB/c spleen mononuclear cells. Proliferation of T-cells was measured at 27 hours of culture. Values are expressed as cpm and represent the mean of [


3


H]TdR incorporation of triplicate cultures.





FIG. 8

illustrates Ldp23-induced cytokine production by lymph node cells of BALB/c mice. Cultures were incubated with varying amounts of Ldp23 or Leishmania lysate, presented as μg/mL, and were assayed by ELISA for the production of interferon-γ (panel A) or interleukin-4 (panel B), both of which are shown as ng/mL.





FIG. 9

shows the PCR amplification of cytokine mRNAs isolated from mucosal leishmaniasis (Panel A) and cutaneous leishmaniasis (panel B) patient PBMC before and after stimulation with representative polypeptides of the present invention. Lanes O and -indicate the level of PCR products at the initiation of culture and after 72 hours of culture, respectively, in the absence of added polypeptide; lanes Lb, 83a and 83b indicate the level of PCR products following culturing of PBMC with


L. braziliensis


lysate, and the Leishmania antigens Lbhsp83a and Lbhsp83b, respectively.





FIG. 10

presents a comparison of the levels of interferon-γ (panel A) and TNF-α (panel B) in the supernatants of 72 hour PBMC cultures from Leishmania-infected and control individuals in response to stimulation with parasite lysate or the indicated polypeptides.





FIG. 11

illustrates the levels of IL-10 p40 (in pg/mL) in the supernatant of PBMC cultures from


L. braziliensis


-infected individuals and uninfected controls 72 hours following stimulation with parasite promastigote lysate (Lb), Lbhsp83a or Lbhsp83b.





FIG. 12

presents the reactivities of sera from


L. braziliensis


infected-patients with representative polypeptides of the present invention in a standard ELISA. Values are expressed as absorbance at 405 nm.





FIGS. 13A and 13B

illustrate the level of secreted IL-4 and IFN-γ (in pg/mL) stimulated in mouse lymph node cultures by the addition of representative polypeptides of the present invention.





FIG. 14

shows the level of IFN-γ (in pg/mL) secreted by Leishmania-infected and uninfected human PBMC stimulated by the Leishmania antigen M15, as compared to the levels stimulated by


L. major


lysate and L-Rack, an antigen that does not appear to be recognized by Leishmania-infected humans.





FIG. 15

shows the level of IFN-γ (in pg/mL) secreted by infected and uninfected human PBMC stimulated by soluble Leishmania antigens (S antigens), as compared to the levels stimulated by


L. major


lysate and L-Rack.





FIG. 16

illustrates the proliferation of murine lymph node cultures stimulated by the addition of representative polypeptides of the present invention. Values are expressed as cpm.





FIG. 17

shows the proliferation of human PBMC, prepared from Leishmania-immune and uninfected individuals, stimulated by M15 as compared to the proliferation stimulated by


L. major


lysate and L-Rack. Values are expressed as cpm.





FIG. 18

illustrates the proliferation of human PBMC, prepared from Leishmania-infected and uninfected individuals, stimulated by soluble Leishmania antigens as compared to the proliferation stimulated by culture medium,


L. major


lysate and L-Rack. Values are expressed as cpm.





FIG. 19

presents a comparison of a Lbhsp83 sequence (SEQ ID NO:6) with homologous sequences from


L. amazonensis


(Lahsp83) (SEQ ID NO:16),


T. cruzi


(Tchsp83) (SEQ ID NO:17) and humans (Huhsp89) (SEQ ID NO:18).





FIG. 20

illustrates the reactivity of rabbit sera raised against soluble Leishmania antigens with Leishmania promastigote lysate (lane 1) and soluble Leishmania antigens (lane 2).





FIG. 21

shows the cDNA and predicted amino acid sequence for the Leishmania antigen Lmsp1a.





FIG. 22

shows a Southern blot of genomic DNA from


L. major


digested with a panel of restriction enzymes (lanes 1 to 7) and six other Leishmania species digested with PstI (lanes 8 to 13) probed with the full-length cDNA insert of Lmsp1a.





FIG. 23

shows a Southern blot of genomic DNA from


L. major


digested with a panel of restriction enzymes, six other Leishmania species digested with PstI and the infectious pathogens


T. cruzi


and


T. brucei


, probed with the full-length cDNA insert of the Leishmania antigen MAPS-1A.





FIG. 24

illustrates the proliferation of PBMC isolated from uninfected-individuals, patients with active mucosal leishmaniasis and patients post kala-azar infection, stimulated by MAPS-1A.





FIG. 25

illustrates the proliferation of murine lymph node cultures stimulated by MAPS-1A.





FIG. 26

illustrates the reactivity of MAPS-1A with sera from human leishmaniasis patients.





FIG. 27

illustrates the reactivity of MAPS-1A with sera from mice immunized against and/or infected with leishmaniasis.





FIG. 28

illustrates the effectiveness of immunization with either soluble Leishmania antigens or a mixture of Ldp23, LbeIF4A and M15 plus adjuvant in conferring protection against infection (as measured by footpad swelling) in a murine leishmaniasis model system, as compared to the administration of adjuvant alone.





FIG. 29

illustrates the effectiveness of immunization with MAPS-1A plus adjuvant in conferring protection against infection (as measured by footpad swelling) in a murine leishmaniasis model system, as compared to the administration of adjuvant alone.





FIGS. 30A and B

illustrate the proliferation of murine lymph node cultures stimulated with either LcgSP8, LcgSP10 or LcgSP3.





FIG. 31

illustrates the effectiveness of immunization with soluble Leishmania antigens, MAPS-1A and M15 plus adjuvant, IL-12, in conferring protection against infection (as measured by footpad swelling) in a murine leishmaniasis model system, as compared to the administration of adjuvant IL-12 alone.





FIG. 32

illustrates the effectiveness of immunization with M15 DNA and MAPS-1A DNA in conferring protection against infection (as measured by footpad swelling) in a murine leishmaniasis model system, as compared to control DNA and saline.





FIG. 33

illustrates the effectiveness of immunization with Leishmania fusion proteins plus IL-12 as adjuvant, in conferring protection against infection in a murine leishmaniasis model system.





FIG. 34

illustrates the effectiveness of immunization with Leishmania fusion proteins plus the adjuvant MPL-SE, in conferring protection against infection in a murine leishmaniasis model system.











DETAILED DESCRIPTION OF THE INVENTION




As noted above, the present invention is generally directed to compositions and methods for preventing, treating and detecting leishmaniasis, as well as for stimulating immune responses in patients. The compositions of the subject invention include polypeptides that comprise at least an immunogenic portion of a Leishmania antigen, or a variant of such an antigen. In one preferred embodiment, compositions of the present invention include multiple polypeptides selected so as to provide enhanced protection against a variety of Leishmania species.




Polypeptides within the scope of the present invention include, but are not limited to, polypeptides comprising immunogenic portions of Leishmania antigens comprising the sequences recited in SEQ ID NO:2 (referred to herein as M15), SEQ ID NO:4 (referred to herein as Ldp23), SEQ ID NO:6 (referred to herein as Lbhsp83), SEQ ID NO:8 (referred to herein as Lt-210), SEQ ID NO:10 (referred to herein as LbeIF4A), SEQ ID NO: 20 (referred to herein as Lmsp1a), SEQ ID NO: 22 (referred to herein as Lmsp9a), SEQ ID NOs: 24 and 26 (referred to herein as MAPS-1A), and SEQ ID NO: 36-42, 49-53 and 55. As used herein, the term “polypeptide” encompasses amino acid chains of any length, including full length proteins (i.e., antigens), wherein the amino acid residues are linked by covalent bonds. Thus, a polypeptide comprising an immunogenic portion of one of the above antigens may consist entirely of the immunogenic portion, or may contain additional sequences. The additional sequences may be derived from the native Leishmania antigen or may be heterologous, and such sequences may (but need not) be immunogenic. An antigen “having” a particular sequence is an antigen that contains, within its full length sequence, the recited sequence. The native antigen may, or may not, contain additional amino acid sequence.




An immunogenic portion of a Leishmania antigen is a portion that is capable of eliciting an immune response (i.e., cellular and/or humoral) in a presently or previously Leishmania-infected patient (such as a human or a dog) and/or in cultures of lymph node cells or peripheral blood mononuclear cells (PBMC) isolated from presently or previously Leishmania-infected individuals. The cells in which a response is elicited may comprise a mixture of cell types or may contain isolated component cells (including, but not limited to, T-cells, NK cells, macrophages, monocytes and/or B cells). In particular, immunogenic portions are capable of inducing T-cell proliferation and/or a dominantly Th1-type cytokine response (e.g., IL-2, IFN-γ, and/or TNF-α production by T-cells and/or NK cells; and/or IL-12 production by monocytes, macrophages and/or B cells). Immunogenic portions of the antigens described herein may generally be identified using techniques known to those of ordinary skill in the art, including the representative methods provided herein.




The compositions and methods of the present invention also encompass variants of the above polypeptides. A polypeptide “variant,” as used herein, is a polypeptide that differs from a native protein in one or more substitutions, deletions, additions and/or insertions, such that the immunogenicity of the polypeptide is not substantially diminished. In other words, the ability of a variant to react with antigen-specific antisera may be enhanced or unchanged, relative to the native protein, or may be diminished by less than 50%, and preferably less than 20%, relative to the native protein. Such variants may generally be identified by modifying one of the above polypeptide sequences and evaluating the reactivity of the modified polypeptide with antigen-specific antibodies or antisera as described herein. Preferred variants include those in which one or more portions, such as an N-terminal leader sequence or transmembrane domain, have been removed. Other preferred variants include variants in which a small portion (e.g., 1-30 amino acids, preferably 5-15 amino acids) has been removed from the N- and/or C-terminal of the mature protein.




Polypeptide variants encompassed by the present invention include those exhibiting at least about 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% or more identity (determined as described above) to the polypeptides disclosed herein.




Preferably, a variant contains conservative substitutions. A “conservative substitution” is one in which an amino acid is substituted for another amino acid that has similar properties, such that one skilled in the art of peptide chemistry would expect the secondary structure and hydropathic nature of the polypeptide to be substantially unchanged. Amino acid substitutions may generally be made on the basis of similarity in polarity, charge, solubility, hydrophobicity, hydrophilicity and/or the amphipathic nature of the residues. For example, negatively charged amino acids include aspartic acid and glutamic acid; positively charged amino acids include lysine and arginine; and amino acids with uncharged polar head groups having similar hydrophilicity values include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; and serine, threonine, phenylalanine and tyrosine. Other groups of amino acids that may represent conservative changes include: (1) ala, pro, gly, glu, asp, gln, asn, ser, thr; (2) cys, ser, tyr, thr; (3) val, ile, leu, met, ala, phe; (4) lys, arg, his; and (5) phe, tyr, trp, his. A variant may also, or alternatively, contain nonconservative changes. In a preferred embodiment, variant polypeptides differ from a native sequence by substitution, deletion or addition of five amino acids or fewer. Variants may also (or alternatively) be modified by, for example, the deletion or addition of amino acids that have minimal influence on the immunogenicity, secondary structure and hydropathic nature of the polypeptide.




Polynucleotides may comprise a native sequence (i.e., an endogenous sequence that encodes a protein or a portion thereof) or may comprise a variant, or a biological or antigenic functional equivalent of such a sequence. Polynucleotide variants may contain one or more substitutions, additions, deletions and/or insertions, as further described below, preferably such that the immunogenicity of the encoded polypeptide is not diminished, relative to a native tumor protein. The effect on the immunogenicity of the encoded polypeptide may generally be assessed as described herein. The term “variants” also encompasses homologous genes of xenogenic origin.




When comparing polynucleotide or polypeptide sequences, two sequences are said to be “identical” if the sequence of nucleotides or amino acids in the two sequences is the same when aligned for maximum correspondence, as described below. Comparisons between two sequences are typically performed by comparing the sequences over a comparison window to identify and compare local regions of sequence similarity. A “comparison window” as used herein, refers to a segment of at least about 20 contiguous positions, usually 30 to about 75, 40 to about 50, in which a sequence may be compared to a reference sequence of the same number of contiguous positions after the two sequences are optimally aligned.




Optimal alignment of sequences for comparison may be conducted using the Megalign program in the Lasergene suite of bioinformatics software (DNASTAR, Inc., Madison, Wis.), using default parameters. This program embodies several alignment schemes described in the following references: Dayhoff, M. O. (1978) A model of evolutionary change in proteins—Matrices for detecting distant relationships. In Dayhoff, M. O. (ed.) Atlas of Protein Sequence and Structure, National Biomedical Research Foundation, Washington D.C. Vol. 5, Suppl. 3, pp. 345-358; Hein J. (1990) Unified Approach to Alignment and Phylogenes pp. 626-645


Methods in Enzymology


vol. 183, Academic Press, Inc., San Diego, Calif.; Higgins, D. G. and Sharp, P. M. (1989)


CABIOS


5:151-153; Myers, E. W. and Muller W. (1988)


CABIOS


4:11-17; Robinson, E. D. (1971)


Comb. Theor


11:105; Santou, N. Nes, M. (1987)


Mol. Biol. Evol


. 4:406-425; Sneath, P. H. A. and Sokal, R. R. (1973)


Numerical Taxonomy—the Principles and Practice of Numerical Taxonomy


, Freeman Press, San Francisco, Calif.; Wilbur, W. J. and Lipman, D. J. (1983)


Proc. Natl. Acad., Sci. USA


80:726-730.




Alternatively, optimal alignment of sequences for comparison may be conducted by the local identity algorithm of Smith and Waterman (1981)


Add. APL. Math


2:482, by the identity alignment algorithm of Needleman and Wunsch (1970)


J. Mol. Biol


. 48:443, by the search for similarity methods of Pearson and Lipman (1988)


Proc. Natl. Acad. Sci. USA


85: 2444, by computerized implementations of these algorithms (GAP, BESTFIT, BLAST, FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group (GCG), 575 Science Dr., Madison, Wis.), or by inspection.




One preferred example of algorithms that are suitable for determining percent sequence identity and sequence similarity are the BLAST and BLAST 2.0 algorithms, which are described in Altschul et al. (1977)


Nucl. Acids Res


. 25:3389-3402 and Altschul et al. (1990)


J. Mol. Biol


. 215:403-410, respectively. BLAST and BLAST 2.0 can be used, for example with the parameters described herein, to determine percent sequence identity for the polynucleotides and polypeptides of the invention. Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information. In one illustrative example, cumulative scores can be calculated using, for nucleotide sequences, the parameters M (reward score for a pair of matching residues; always >0) and N (penalty score for mismatching residues; always <0). For amino acid sequences, a scoring matrix can be used to calculate the cumulative score. Extension of the word hits in each direction are halted when: the cumulative alignment score falls off by the quantity X from its maximum achieved value; the cumulative score goes to zero or below, due to the accumulation of one or more negative-scoring residue alignments; or the end of either sequence is reached. The BLAST algorithm parameters W, T and X determine the sensitivity and speed of the alignment. The BLASTN program (for nucleotide sequences) uses as defaults a wordlength (W) of 11, and expectation (E) of 10, and the BLOSUM62 scoring matrix (see Henikoff and Henikoff (1989)


Proc. Natl. Acad. Sci. USA


89:10915) alignments, (B) of 50, expectation (E) of 10, M=5, N=−4 and a comparison of both strands.




Preferably, the “percentage of sequence identity” is determined by comparing two optimally aligned sequences over a window of comparison of at least 20 positions, wherein the portion of the polynucleotide or polypeptide sequence in the comparison window may comprise additions or deletions (i.e., gaps) of 20 percent or less, usually 5 to 15 percent, or 10 to 12 percent, as compared to the reference sequences (which does not comprise additions or deletions) for optimal alignment of the two sequences. The percentage is calculated by determining the number of positions at which the identical nucleic acid bases or amino acid residue occurs in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the reference sequence (i.e., the window size) and multiplying the results by 100 to yield the percentage of sequence identity.




Therefore, the present invention encompasses polynucleotide and polypeptide sequences having substantial identity to the sequences disclosed herein, for example those comprising at least 50% sequence identity, preferably at least 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher, sequence identity compared to a polynucleotide or polypeptide sequence of this invention using the methods described herein, (e.g., BLAST analysis using standard parameters, as described below). One skilled in this art will recognize that these values can be appropriately adjusted to determine corresponding identity of proteins encoded by two nucleotide sequences by taking into account codon degeneracy, amino acid similarity, reading frame positioning and the like.




In additional embodiments, the present invention provides isolated polynucleotides and polypeptides comprising various lengths of contiguous stretches of sequence identical to or complementary to one or more of the sequences disclosed herein. For example, polynucleotides are provided by this invention that comprise at least about 15, 20, 30, 40, 50, 75, 100, 150, 200, 300, 400, 500 or 1000 or more contiguous nucleotides of one or more of the sequences disclosed herein as well as all intermediate lengths there between. It will be readily understood that “intermediate lengths”, in this context, means any length between the quoted values, such as 16, 17, 18, 19, etc.; 21, 22, 23, etc.; 30, 31, 32, etc.; 50, 51, 52, 53, etc.; 100, 101, 102, 103, etc.; 150, 151, 152, 153, etc.; including all integers through 200-500; 500-1,000, and the like.




The polynucleotides of the present invention, or fragments thereof, regardless of the length of the coding sequence itself, may be combined with other DNA sequences, such as promoters, polyadenylation signals, additional restriction enzyme sites, multiple cloning sites, other coding segments, and the like, such that their overall length may vary considerably. It is therefore contemplated that a nucleic acid fragment of almost any length may be employed, with the total length preferably being limited by the ease of preparation and use in the intended recombinant DNA protocol. For example, illustrative DNA segments with total lengths of about 10,000, about 5000, about 3000, about 2,000, about 1,000, about 500, about 200, about 100, about 50 base pairs in length, and the like, (including all intermediate lengths) are contemplated to be useful in many implementations of this invention.




In other embodiments, the present invention is directed to polynucleotides that are capable of hybridizing under moderately stringent conditions to a polynucleotide sequence provided herein, or a fragment thereof, or a complementary sequence thereof. Hybridization techniques are well known in the art of molecular biology. For purposes of illustration, suitable moderately stringent conditions for testing the hybridization of a polynucleotide of this invention with other polynucleotides include prewashing in a solution of 5×SSC, 0.5% SDS, 1.0 mM EDTA (pH 8.0); hybridizing at 50° C.-65° C., 5×SSC, overnight; followed by washing twice at 65° C. for 20 minutes with each of 2×, 0.5× and 0.2×SSC containing 0.1% SDS.




Moreover, it will be appreciated by those of ordinary skill in the art that, as a result of the degeneracy of the genetic code, there are many nucleotide sequences that encode a polypeptide as described herein. Some of these polynucleotides bear minimal homology to the nucleotide sequence of any native gene. Nonetheless, polynucleotides that vary due to differences in codon usage are specifically contemplated by the present invention. Further, alleles of the genes comprising the polynucleotide sequences provided herein are within the scope of the present invention. Alleles are endogenous genes that are altered as a result of one or more mutations, such as deletions, additions and/or substitutions of nucleotides. The resulting mRNA and protein may, but need not, have an altered structure or function. Alleles may be identified using standard techniques (such as hybridization, amplification and/or database sequence comparison).




“Polypeptides” as described herein also include combination polypeptides, also referred to as fusion proteins. A “combination polypeptide” is a polypeptide comprising at least one of the above immunogenic portions and one or more additional immunogenic Leishmania sequences, which are joined via a peptide linkage into a single amino acid chain. The sequences may be joined directly (i.e., with no intervening amino acids) or may be joined by way of a linker sequence (e.g., Gly-Cys-Gly) that does not significantly diminish the immunogenic properties of the component polypeptides.




Fusion proteins may generally be prepared using standard techniques, including chemical conjugation. Preferably, a fusion protein is expressed as a recombinant protein, allowing the production of increased levels, relative to a non-fused protein, in an expression system. Briefly, DNA sequences encoding the polypeptide components may be assembled separately, and ligated into an appropriate expression vector. The 3′ end of the DNA sequence encoding one polypeptide component is ligated, with or without a peptide linker, to the 5′ end of a DNA sequence encoding the second polypeptide component so that the reading frames of the sequences are in frame. This permits translation into a single fusion protein that retains the biological activity of both component polypeptides.




A peptide linker sequence may be employed to separate the first and the second polypeptide components by a distance sufficient to ensure that each polypeptide folds into its secondary and tertiary structures. Such a peptide linker sequence is incorporated into the fusion protein using standard techniques well known in the art. Suitable peptide linker sequences may be chosen based on the following factors: (1) their ability to adopt a flexible extended conformation; (2) their inability to adopt a secondary structure that could interact with functional epitopes on the first and second polypeptides; and (3) the lack of hydrophobic or charged residues that might react with the polypeptide functional epitopes. Preferred peptide linker sequences contain Gly, Asn and Ser residues. Other near neutral amino acids, such as Thr and Ala may also be used in the linker sequence. Amino acid sequences which may be usefully employed as linkers include those disclosed in Maratea et al.,


Gene


40:39-46, 1985; Murphy et al.,


Proc. Natl. Acad. Sci. USA


83:8258-8262, 1986; U.S. Pat. No. 4,935,233 and U.S. Pat. No. 4,751,180. The linker sequence may generally be from 1 to about 50 amino acids in length. Linker sequences are not required when the first and second polypeptides have non-essential N-terminal amino acid regions that can be used to separate the functional domains and prevent steric interference.




The ligated DNA sequences are operably linked to suitable transcriptional or translational regulatory elements. The regulatory elements responsible for expression of DNA are located only 5′ to the DNA sequence encoding the first polypeptides. Similarly, stop codons required to end translation and transcription termination signals are only present 3′ to the DNA sequence encoding the second polypeptide. The preparation of fusion proteins of Leishmania antigens is described below in Example 19.




In general, Leishmania antigens having immunogenic properties, and DNA sequences encoding such antigens, may be prepared using any of a variety of procedures from one or more Leishmania species including, but not limited to,


L. donovani, L. chagasi, L. infantum, L. major, L. amazonensis, L. braziliensis, L. panamensis, L. mexicana, L. tropica


, and


L. guyanensis


. Such species are available, for example, from the American Type Culture Collection (ATCC), Rockville, Md. For example, peptides isolated from MHC class II molecules of macrophages infected with a Leishmania species may be used to rescue the corresponding Leishmania donor antigens. MHC class II molecules are expressed mainly by cells of the immune system, including macrophages. These molecules present peptides, which are usually 13-17 amino acids long, derived from foreign antigens that are degraded in cellular vesicles. The bound peptide antigens are then recognized by CD4 T-cells. Accordingly, foreign peptides isolated from MHC class II molecules of, for example, Leishmania-infected murine macrophages may be used to identify immunogenic Leishmania proteins.




Briefly, peptides derived from Leishmania antigens may be isolated by comparing the reverse phase HPLC profile of peptides extracted from infected macrophages with the profile of peptides extracted from uninfected cells. Peptides giving rise to distinct HPLC peaks unique to infected macrophages may then be sequenced using, for example, Edman chemistry as described in Edman and Berg,


Eur J. Biochem


, 80:116-132 (1967). A DNA fragment corresponding to a portion of a Leishmania gene encoding the peptide may then be amplified from a Leishmania cDNA library using an oligonucleotide sense primer derived from the peptide sequence and an oligo dT antisense primer. The resulting DNA fragment may then be used as a probe to screen a Leishmania library for a full length cDNA or genomic clone that encodes the Leishmania antigen. Such screens may generally be performed using techniques well known to those of ordinary skill in the art, such as those described in Sambrook et al.,


Molecular Cloning: A Laboratory Manual


, Cold Spring Harbor Laboratories, Cold Spring Harbor, N.Y. (1989).




This approach may be used to identify a 23 kD


Leishmania donovani


antigen (referred to herein as Ldp23). The sequence of a polynucleotide encoding Ldp23 is provided in SEQ ID NO:3 and the amino acid sequence of Ldp23 is provided in SEQ ID NO:4. Using the methods described herein, Ldp23 has been shown to induce a Th1 immune response in T-cells prepared from Leishmania-infected mice.




Alternatively, a Leishmania cDNA or genomic expression library may be screened with serum from a Leishmania-infected individual, using techniques well known to those of ordinary skill in the art. Polynucleotides encoding reactive antigens may then be used to express the recombinant antigen for purification. The immunogenic properties of the purified Leishmania antigens may then be evaluated using, for example the representative methods described herein.




For example, sera from Leishmania-infected mice may be used to screen a cDNA library prepared from Leishmania amastigotes. Reactive clones may then be expressed and recombinant proteins assayed for the ability to stimulate T-cells or NK cells derived from Leishmania-immune individuals (i.e., individuals having evidence of infection, as documented by positive serological reactivity with Leishmania-specific antibodies and/or a Leishmania-specific DTH response, without clinical symptoms of leishmaniasis). This procedure may be used to obtain a recombinant polynucleotide encoding the Leishmania antigen designated M15. The sequence of such a polynucleotide is provided in SEQ ID NO:1, and the amino acid sequence of the encoded protein is provided in SEQ ID NO:2.




A similar approach may be used to isolate a genomic polynucleotide encoding an immunogenic


Leishmania braziliensis


antigen, referred to herein as Lbhsp83. More specifically, a genomic clone encoding Lbhsp83 may be isolated by screening a


L. braziliensis


expression library with sera from a Leishmania-infected individual. The DNA encoding Lbhsp83 is homologous to the gene encoding the eukaryotic 83 kD) heat shock protein. The sequence of a polynucleotide encoding nearly all of Lbhsp83 is presented in SEQ ID NO:5, and the encoded amino acid sequence is provided in SEQ ID NO:6. Using the methods described below, Lbhsp83 has been found to stimulate proliferation, and a mixed Th1 and Th2 cytokine profile, in PBMC isolated from


L. braziliensis


-infected patients. Accordingly, Lbhsp83 is an immunogenic Leishmania antigen. Regions of Lbhsp83 that are not conserved with the mammalian gene have been found to be particularly potent for T-cell stimulation and antibody binding. Such regions may be identified, for example, by visual inspection of the sequence comparison provided in FIG.


19


.




This approach may also be used to isolate a polynucleotide encoding a 210 kD immunogenic


L. tropica


antigen, referred to herein as Lt-210. The preparation and characterization of Lt-210, and immunogenic portions thereof (such as Lt-1 and immunogenic repeat and non-repeat sequences), is described in detail in U.S. patent application Ser. No. 08/511,872, filed Aug. 4, 1995. The sequence of a polynucleotide encoding Lt-1 is provided in SEQ ID NO:7 and the encoded amino acid sequence is presented in SEQ ID NO:8.




The above approach may further be used to isolate a polynucleotide encoding a


L. braziliensis


antigen referred to herein as LbeIF4A. Briefly, such a clone may be isolated by screening a


L. braziliensis


expression library with sera obtained from a patient afflicted with mucosal leishmaniasis, and analyzing the reactive antigens for the ability to stimulate proliferative responses and preferential Th1 cytokine production in PBMC isolated from Leishmania-infected patients, as described below. The preparation and characterization of LbeIF4A is described in detail in U.S. patent application Ser. Nos. 08/454,036 and 08/488,386, which are continuations-in-part of U.S. patent application Ser. No. 08/232,534, filed Apr. 22, 1994. The sequence of a polynucleotide encoding LbeIF4A is provided in SEQ ID NO:9 and the encoded amino acid sequence is presented in SEQ ID NO:10. Homologs of LbeIF4A, such as that found in


L. major


, may also be isolated using this approach, and are within the scope of the present invention.




Compositions of the present invention may also, or alternatively, contain soluble Leishmania antigens. As used herein, “soluble Leishmania antigens” refers to a mixture of at least 8 different Leishmania antigens that may be isolated from the supernatant of Leishmania promastigotes of any species grown for 8-12 hours in protein-free medium. Briefly, the organisms are grown to late log phase in complex medium with serum until they reach a density of 2-3×10


7


viable organisms per mL of medium. The organisms are thoroughly washed to remove medium components and resuspended at 2-3×10


7


viable organisms per mL of defined serum-free medium consisting of equal parts RPMI 1640 and medium 199, both from Gibco BRL, Gaithersburg, Md. After 8-12 hours, the supernatant containing soluble Leishmania antigens is removed, concentrated 10 fold and dialyzed against phosphate-buffered saline for 24 hours. The presence of at least eight different antigens within the mixture of Leishmania antigens may be confirmed using SDS-PAGE (i.e., through the observation of at least 8 different bands). The immunogenic properties of the soluble Leishmania antigens may be confirmed by evaluating the ability of the preparation to elicit an immune response in cultures of lymph node cells and/or peripheral blood mononuclear cells (PBMC) isolated from presently or previously Leishmania-infected individuals. Such an evaluation may be performed as described below.




Individual antigens present within the mixture of soluble Leishmania antigens may be isolated by immunizing mice or rabbits with Leishmania culture supernatant, containing soluble antigens, and employing the resultant sera to screen a Leishmania cDNA expression library as described in detail below. This procedure may be used to isolate recombinant polynucleotides encoding the


L. major


antigens referred to herein as Lmsp1a, Lmsp9a and MAPS-1A. DNA sequences encoding Lmsp1a, Lmsp9a and MAPS-1A are provided in SEQ ID NO: 19, 21 and 23, respectively, with the corresponding predicted amino acid sequences being presented in SEQ ID NO: 20, 22 and 24, respectively. Similarly, sera from mice or rabbits immunized with


L. major


culture supernatant may be used to screen an


L. major


genomic DNA library. As detailed below, this procedure may be used to isolate polynucleotides encoding the


L. major


antigens referred to herein as LmgSP1, LmgSP3, LmgSP5, LmgSP8, LmgSP9, LmgSP13, LmgSP19, and polynucleotides encoding the


L. chagasi


antigens LcgSP1, LcgSP3, LcgSP4, LcgSP8, and LcgSP10. The DNA sequences encoding these antigens are provided in SEQ ID NO:29-35 and 44-48, respectively, with the corresponding amino acid sequences being provided in SEQ ID NO: 36-42 and 49-53. The


L. major


antigens referred to herein as 1G6-34, 1E6-44, 4A5-63, 1B11-39, 2A10-37, 4G2-83, 4H6-41 and 8G3-100 may be isolated by means of CD4+ T cell expression cloning as described below. DNA sequences encoding these antigens are provided in SEQ ID NO: 72-79, respectively, with the corresponding predicted amino acid sequences being provided in SEQ ID NO: 80-87. The immunogenic properties of the isolated Leishmania antigens may be evaluated using, for example, the representative methods described herein.




Regardless of the method of preparation, the antigens described herein are immunogenic. In other words, the antigens (and immunogenic portions thereof) are capable of eliciting an immune response in cultures of lymph node cells and/or peripheral blood mononuclear cells (PBMC) isolated from presently or previously Leishmania-infected individuals. More specifically, the antigens, and immunogenic portions thereof, have the ability to induce T-cell proliferation and/or to elicit a dominantly Th1-type cytokine response (e.g., IL-2, IFN-γ, and/or TNF-α production by T-cells and/or NK cells; and/or IL-12 production by monocytes, macrophages and/or B cells) in cells isolated from presently or previously Leishmania-infected individuals. A Leishmania-infected individual may be afflicted with a form of leishmaniasis (such as subclinical, cutaneous, mucosal or active visceral) or may be asymptomatic. Such individuals may be identified using methods known to those of ordinary skill in the art. Individuals with leishmaniasis may be identified based on clinical findings associated with at least one of the following: isolation of parasite from lesions, a positive skin test with Leishmania lysate or a positive serological test. Asymptomatic individuals are infected individuals who have no signs or symptoms of the disease. Such individuals can be identified based on a positive serological test and/or skin test with Leishmania lysate.




The term “PBMC,” which refers to a preparation of nucleated cells consisting primarily of lymphocytes and monocytes that are present in peripheral blood, encompasses both mixtures of cells and preparations of one or more purified cell types. PBMC may be isolated by methods known to those in the art. For example, PBMC may be isolated by density centrifugation through, for example, Ficol™ (Winthrop Laboratories, New York). Lymph node cultures may generally be prepared by immunizing BALB/c mice (e.g., in the rear foot pad) with Leishmania promastigotes emulsified in complete Freünd's adjuvant. The draining lymph nodes may be excised following immunization and T-cells may be purified in an anti-mouse Ig column to remove the B cells, followed by a passage through a Sephadex G10 column to remove the macrophages. Similarly, lymph node cells may be isolated from a human following biopsy or surgical removal of a lymph node.




The ability of a polypeptide (e.g., a Leishmania antigen or a portion or other variant thereof) to induce a response in PBMC or lymph node cell cultures may be evaluated by contacting the cells with the polypeptide and measuring a suitable response. In general, the amount of polypeptide that is sufficient for the evaluation of about 2×10


5


cells ranges from about 10 ng to about 100 μg, and preferably is about 1-10 μg. The incubation of polypeptide with cells is typically performed at 37° C. for about 1-3 days. Following incubation with polypeptide, the cells are assayed for an appropriate response. If the response is a proliferative response, any of a variety of techniques well known to those of ordinary skill in the art may be employed. For example, the cells may be exposed to a pulse of radioactive thymidine and the incorporation of label into cellular DNA measured. In general, a polypeptide that results in at least a three fold increase in proliferation above background (i.e., the proliferation observed for cells cultured without polypeptide) is considered to be able to induce proliferation.




Alternatively, the response to be measured may be the secretion of one or more cytokines (such as interferon-γ (IFN-γ), interleukin-4 (IL-4), interleukin-12 (p70 and/or p40), interleukin-2 (IL-2) and/or tumor necrosis factor-α (TNF-α)) or the change in the level of mRNA encoding one or more specific cytokines. In particular, the secretion of interferon-γ, interleukin-2, tumor necrosis factor-α and/or interleukin-12 is indicative of a Th1 response, which is responsible for the protective effect against Leishmania. Assays for any of the above cytokines may generally be performed using methods known to those of ordinary skill in the art, such as an enzyme-linked immunosorbent assay (ELISA). Suitable antibodies for use in such assays may be obtained from a variety of sources such as Chemicon, Temucula, Calif. and PharMingen, San Diego, Calif., and may generally be used according to the manufacturer's instructions. The level of mRNA encoding one or more specific cytokines may be evaluated by, for example, amplification by polymerase chain reaction (PCR). In general, a polypeptide that is able to induce, in a preparation of about 1-3×10


5


cells, the production of 30 pg/mL of IL-12, IL-4, IFN-γ, TNF-α or IL-12p40, or 10 pg/mL of IL-12p70, is considered able to stimulate production of a cytokine.




Immunogenic portions of the antigens described herein may be prepared and identified using well known techniques, such as those summarized in Paul, Fundamental Immunology, 3rd ed., 243-247 (Raven Press, 1993) and references cited therein. Such techniques include screening polypeptides derived from the native antigen for immunogenic properties using, for example, the representative techniques described herein. An immunogenic portion of a polypeptide is a portion that, within such representative assays, generates an immune response (e.g., proliferation and/or cytokine production) that is substantially similar to that generated by the full length antigen. In other words, an immunogenic portion of an antigen may generate at least about 25%, and preferably at least about 50%, of the response generated by the full length antigen in the model assays described herein.




Portions and other variants of immunogenic Leishmania antigens may be generated by synthetic or recombinant means. Synthetic polypeptides having fewer than about 100 amino acids, and generally fewer than about 50 amino acids, may be generated using techniques well known to those of ordinary skill in the art. For example, such polypeptides may be synthesized using any of the commercially available solid-phase techniques, such as the Merrifield solid-phase synthesis method, where amino acids are sequentially added to a growing amino acid chain. See Merrifield,


J. Am. Chem. Soc


. 85:2149-2146, 1963. Equipment for automated synthesis of polypeptides is commercially available from suppliers such as Perkin Elmer/Applied BioSystemsDivision, Foster City, Calif., and may be operated according to the manufacturer's instructions.




Recombinant polypeptides containing portions and/or variants of a native antigen may be readily prepared from a DNA sequence encoding the antigen. For example, supernatants from suitable host/vector systems which secrete recombinant protein into culture media may be first concentrated using a commercially available filter. Following concentration, the concentrate may be applied to a suitable purification matrix such as an affinity matrix or an ion exchange resin. Finally, one or more reverse phase HPLC steps can be employed to further purify a recombinant protein.




In general, any of a variety of expression vectors known to those of ordinary skill in the art may be employed to express recombinant polypeptides of this invention. Expression may be achieved in any appropriate host cell that has been transformed or transfected with an expression vector containing a polynucleotide that encodes a recombinant polypeptide. Suitable host cells include prokaryotes, yeast and higher eukaryotic cells. Preferably, the host cells employed are


E. coli


, yeast or a mammalian cell line such as COS or CHO. The DNA sequences expressed in this manner may encode naturally occurring antigens, portions of naturally occurring antigens, or other variants thereof. For example, variants of a native antigen may generally be prepared using standard mutagenesis techniques, such as oligonucleotide-directed site-specific mutagenesis, and sections of the DNA sequence may be removed to permit preparation of truncated polypeptides.




In another aspect, the present invention provides epitope repeat sequences, or antigenic epitopes, of a Leishmania antigen, together with polypeptides comprising at least two such contiguous antigenic epitopes. As used herein an “epitope” is a portion of an antigen that reacts with sera from Leishmania-infected individuals (i.e. an epitope is specifically bound by one or more antibodies present in such sera). As discussed above, epitopes of the antigens described in the present application may be generally identified using techniques well known to those of skill in the art.




In one embodiment, antigenic epitopes of the present invention comprise an amino acid sequence provided in SEQ ID NO:43, 56, 57 or 58. As discussed in more detail below, antigenic epitopes provided herein may be employed in the diagnosis and treatment of Leishmania infection, either alone or in combination with other Leishmania antigens or antigenic epitopes. Antigenic epitopes and polypeptides comprising such epitopes may be prepared by synthetic means, as described generally above and in detail in Example 15.




In certain aspects of the present invention, described in detail below, the polypeptides, antigenic epitopes and/or soluble Leishmania antigens may be incorporated into pharmaceutical compositions or vaccines. For clarity, the term “polypeptide” will be used when describing specific embodiments of the inventive therapeutic compositions and diagnostic methods. However, it will be clear to one of skill in the art that the antigenic epitopes of the present invention may also be employed in such compositions and methods.




Pharmaceutical compositions comprise one or more polypeptides, each of which may contain one or more of the above sequences (or variants thereof), and a physiologically acceptable carrier. Vaccines, also referred to as immunogenic compositions, comprise one or more of the above polypeptides and an immunostimulant, such as an adjuvant (e.g., LbeIF4A, interleukin-12 or other cytokines) or a liposome (into which the polypeptide is incorporated). In certain embodiments, the inventive vaccines include an adjuvant capable of eliciting a predominantly Th-1 type response. Preferred adjuvants for use in eliciting a predominantly Th1-type response include, for example, a combination of monophosphoryl lipid A, preferably 3-de-O-acylated monophosphoryl lipid A (3D-MPL), together with an aluminum salt. MPL adjuvants are available from Ribi ImmunoChem Research Inc. (Hamilton, Mont.; see U.S. Pat. Nos. 4,436,727; 4,877,611; 4,866,034 and 4,912,094). CpG-containing oligonucleotides (in which the CpG dinucleotide is unmethylated) also induce a predominantly Th1 response. Such oligonucleotides are well known and are described, for example, in WO 96/02555 and WP 99/33488. Immunostimulatory DNA sequences are also described, for example, by Sato et al.,


Science


273:352, 1996. Another preferred adjuvant is a saponin, preferably QS21 (Aquila, United States), which may be used alone or in combination with other adjuvants. For example, an enhanced system involves the combination of a monophosphoryl lipid A and saponin derivative, such as the combination of QS21 and 3D-MPL as described in WO 94/00153, or a less reactogenic composition where the QS21 is quenched with cholesterol, as described in WO 96/33739. Other preferred formulations comprise an oil-in-water emulsion and tocopherol. A particularly potent adjuvant formulation involving QS21, 3D-MPL and tocopherol in an oil-in-water emulsion is described in WO 95/17210.




Vaccines may additionally contain a delivery vehicle, such as a biodegradable microsphere (disclosed, for example, in U.S. Pat. Nos. 4,897,268 and 5,075,109). Pharmaceutical compositions and vaccines within the scope of the present invention may also contain other Leishmania antigens, either incorporated into a combination polypeptide or present within one or more separate polypeptides.




Alternatively, a pharmaceutical composition or vaccine may contain an immunostimulant such as, an adjuvant (e.g., LbeIF4A, interleukin-12 or other cytokines) or DNA coding for such enhancers, and DNA encoding one or more of the polypeptides as described above, such that the polypeptide is generated in situ. In such pharmaceutical compositions and vaccines, the DNA may be present within any of a variety of delivery systems known to those of ordinary skill in the art, including nucleic acid expression systems, bacteria and viral expression systems. Appropriate nucleic acid expression systems contain the necessary DNA sequences for expression in the patient (such as a suitable promoter and terminating signal). Bacterial delivery systems involve the administration of a bacterium (such as Bacillus-Calmette-Guerrin) that expresses an immunogenic portion of the polypeptide on its cell surface. In a preferred embodiment, the DNA may be introduced using a viral expression system (e.g., vaccinia or other pox virus, retrovirus, or adenovirus), which may involve the use of a non-pathogenic (defective), replication competent virus. Techniques for incorporating DNA into such expression systems are well known to those of ordinary skill in the art. The DNA may also be “naked,” as described, for example, in Ulmer et al.,


Science


259:1745-1749 (1993) and reviewed by Cohen,


Science


259:1691-1692 (1993). The uptake of naked DNA may be increased by coating the DNA onto biodegradable beads, which are efficiently transported into the cells.




While any suitable carrier known to those of ordinary skill in the art may be employed in the pharmaceutical compositions of this invention, the type of carrier will vary depending on the mode of administration. For parenteral administration, such as subcutaneous injection, the carrier preferably comprises water, saline, alcohol, a fat, a wax or a buffer. For oral administration, any of the above carriers or a solid carrier, such as mannitol, lactose, starch, magnesium stearate, sodium saccharine, talcum, cellulose, glucose, sucrose, and magnesium carbonate, may be employed. Biodegradable microspheres (e.g., polylactic galactide) may also be employed as carriers for the pharmaceutical compositions of this invention. Suitable biodegradable microspheres are disclosed, for example, in U.S. Pat. Nos. 4,897,268 and 5,075,109.




Any of a variety of adjuvants may be employed in the vaccines of this invention to nonspecifically enhance the immune response. Most adjuvants contain a substance designed to protect the antigen from rapid catabolism, such as aluminum hydroxide or mineral oil, and a nonspecific stimulator of immune responses, such as lipid A,


Bordella pertussis


or


Mycobacterium tuberculosis


. Suitable adjuvants are commercially available as, for example, Freund's Incomplete Adjuvant and Complete Adjuvant (Difco Laboratories, Detroit, Mich.), Merck Adjuvant 65 (Merck and Company, Inc., Rahway, N.J.), alum, biodegradable microspheres, monophosphoryl lipid A and quil A. Preferred adjuvants include LbeIF4A, IL-12 and other cytokines such as IFN-γ or granulocyte-macrophage colony stimulating factor (GM-CSF). By virtue of its ability to induce an exclusive Th1 immune response, the use of LbeIF4A, and variants thereof, as an adjuvant in the vaccines of the present invention is particularly preferred.




In one preferred embodiment, compositions of the present invention include multiple polypeptides selected so as to provide enhanced protection against a variety of Leishmania species. Such polypeptides may be selected based on the species of origin of the native antigen or based on a high degree of conservation of amino acid sequence among different species of Leishmania. A combination of individual polypeptides may be particularly effective as a prophylactic and/or therapeutic vaccine because (1) stimulation of proliferation and/or cytokine production by a combination of individual polypeptides may be additive, (2) stimulation of proliferation and/or cytokine production by a combination of individual polypeptides may be synergistic, (3) a combination of individual polypeptides may stimulate cytokine profiles in such a way as to be complementary to each other and/or (4) individual polypeptides may be complementary to one another when certain of them are expressed more abundantly on the individual species or strain of Leishmania responsible for infection. A preferred combination contains polypeptides that comprise immunogenic portions of M15, Ldp23, Lbhsp83, Lt-1 and LbeIF4A. Alternatively, or in addition, the combination may include one or more polypeptides comprising immunogenic portions of other Leishmania antigens disclosed herein, and/or soluble Leishmania antigens.




In another preferred embodiment, compositions of the present invention include single polypeptides selected so as to provide enhanced protection against a variety of Leishmania species. A single individual polypeptide may be particularly effective as a prophylactic and/or therapeutic vaccine for those reasons stated above for combinations of individual polypeptides.




In another embodiment, compositions of the present invention include individual polypeptides and combinations of the above described polypeptides employed with a variety of adjuvants, such as IL-12 (protein or DNA) to confer a protective response against a variety of Leishmania species.




In yet another embodiment, compositions of the present invention include DNA constructs of the various Leishmania species employed alone or in combination with variety of adjuvants, such as IL-12 (protein or DNA) to confer a protective response against a variety of Leishmania species.




The above pharmaceutical compositions and vaccines may be used, for example, to induce protective immunity against Leishmania in a patient, such as a human or a dog, to prevent leishmaniasis. Appropriate doses and methods of administration for this purposes are described in detail below.




The pharmaceutical compositions and vaccines described herein may also be used to stimulate an immune response, which may be cellular and/or humoral, in a patient. For Leishmania-infected patients, the immune responses that may be generated include a preferential Th1 immune response (i.e., a response characterized by the production of the cytokines interleukin-1, interleukin-2, interleukin-12 and/or interferon-γ, as well as tumor necrosis factor-α). For uninfected patients, the immune response may be the production of interleukin-12 and/or interleukin-2, or the stimulation of gamma delta T-cells. In either category of patient, the response stimulated may include IL-12 production. Such responses may also be elicited in biological samples of PBMC or components thereof derived from Leishmania-infected or uninfected individuals. As noted above, assays for any of the above cytokines may generally be performed using methods known to those of ordinary skill in the art, such as an enzyme-linked immunosorbent assay (ELISA).




Suitable pharmaceutical compositions and vaccines for use in this aspect of the present invention are those that contain at least one polypeptide comprising an immunogenic portion of a Leishmania antigen disclosed herein (or a variant thereof). Preferably, the polypeptides employed in the pharmaceutical compositions and vaccines are complementary, as described above. Soluble Leishmania antigens, with or without additional polypeptides, may also be employed.




The pharmaceutical compositions and vaccines described herein may also be used to treat a patient afflicted with a disease responsive to IL-12 stimulation. The patient may be any warm-blooded animal, such as a human or a dog. Such diseases include infections (which may be, for example, bacterial, viral or protozoan) or diseases such as cancer. In one embodiment, the disease is leishmaniasis, and the patient may display clinical symptoms or may be asymptomatic. In general, the responsiveness of a particular disease to IL-12 stimulation may be determined by evaluating the effect of treatment with a pharmaceutical composition or vaccine of the present invention on clinical correlates of immunity. For example, if treatment results in a heightened Th1 response or the conversion of a Th2 to a Th1 profile, with accompanying clinical improvement in the treated patient, the disease is responsive to IL-12 stimulation. Polypeptide administration may be as described below, or may extend for a longer period of time, depending on the indication. Preferably, the polypeptides employed in the pharmaceutical compositions and vaccines are complementary, as described above. A particularly preferred combination contains polypeptides that comprise immunogenic portions of M15, Ldp23, Lbhsp83, Lt-1 and LbeIF4A, Lmsp1a, Lmsp9a, and MAPS-1A. Soluble Leishmania antigens, with or without additional polypeptides, may also be employed.




Routes and frequency of administration, as well as dosage, for the above aspects of the present invention will vary from individual to individual and may parallel those currently being used in immunization against other infections, including protozoan, viral and bacterial infections. In general, the pharmaceutical compositions and vaccines may be administered by injection (e.g., intracutaneous, intramuscular, intravenous or subcutaneous), intranasally (e.g., by aspiration) or orally. Between 1 and 12 doses may be administered over a 1 year period. For therapeutic vaccination (i.e., treatment of an infected individual), 12 doses are preferably administered, at one month intervals. For prophylactic use, 3 doses are preferably administered, at 3 month intervals. In either case, booster vaccinations may be given periodically thereafter. Alternate protocols may be appropriate for individual patients. A suitable dose is an amount of polypeptide or DNA that, when administered as described above, is capable of raising an immune response in an immunized patient sufficient to protect the patient from leishmaniasis for at least 1-2 years. In general, the amount of polypeptide present in a dose (or produced in situ by the DNA in a dose) ranges from about 100 ng to about 1 mg per kg of host, typically from about 10 μg to about 100 μg. Suitable dose sizes will vary with the size of the patient, but will typically range from about 0.1 mL to about 5 mL.




In another aspect, this invention provides methods for using one or more of the polypeptides described above to diagnose Leishmania infection in a patient using a skin test. As used herein, a “skin test” is any assay performed directly on a patient in which a delayed-type hypersensitivity (DTH) reaction (such as induration and accompanying redness) is measured following intradermal injection of one or more polypeptides as described above. Such injection may be achieved using any suitable device sufficient to contact the polypeptide or polypeptides with dermal cells of the patient, such as a tuberculin syringe or 1 mL syringe. Preferably, the reaction is measured at least 48 hours after injection, more preferably 72 hours after injection.




The DTH reaction is a cell-mediated immune response, which is greater in patients that have been exposed previously to a test antigen (i.e., an immunogenic portion of a polypeptide employed, or a variant thereof). The response may measured visually, using a ruler. In general, induration that is greater than about 0.5 cm in diameter, preferably greater than about 1.0 cm in diameter, is a positive response, indicative of Leishmania infection, which may or may not be manifested as an active disease.




The polypeptides of this invention are preferably formulated, for use in a skin test, as pharmaceutical compositions containing at least one polypeptide and a physiologically acceptable carrier, as described above. Such compositions typically contain one or more of the above polypeptides in an amount ranging from about 1 μg to 100 μg, preferably from about 10 μg to 50 μg in a volume of 0.1 mL. Preferably, the carrier employed in such pharmaceutical compositions is a saline solution with appropriate preservatives, such as phenol and/or Tween 80™.




The inventive polypeptides may also be employed in combination with one or more known Leishmania antigens in the diagnosis of leishmaniasis, using, for example, the skin test described above. Preferably, individual polypeptides are chosen in such a way as to be complementary to each other. Examples of known Leishmania antigens which may be usefully employed in conjunction with the inventive polypeptides include K39 (Burns et al.,


Proc. Natl. Acad. Sci. USA


, 1993 90:775-779).




The following Examples are offered by way of illustration and not by way of limitation.




EXAMPLES




Example 1




Preparation of M15




This Example illustrates the preparation of a Leishmania antigen M15, having the sequence provided in SEQ ID NO:2.




An


L. major


(Friedlan strain) amastigote cDNA expression library prepared in the λZAP II vector (Stratagene, La Jolla, Calif.) was screened according to manufacturer's instructions using sera obtained from


L. major


infected BALB/c mice (8 weeks post inoculation). Approximately 40,000 plaques were screened and four clones expressing reactive antigens were purified to homogeneity by two subsequent rounds of low density screening. Bluescript phagemid inserts were excised from positive clones for further analysis. An EcoRI/SstII restriction fragment from the 5′ end of one partial cDNA insert isolated during first round screening (pLmal-1) was subsequently used as a probe to rescreen for clones containing full length cDNA inserts. The probe was labeled to high specific activity (□10


9


cpm/μg) with [├→-


32


P]dCTP using the random primer method and was used to screen □10,000 plaques of the


L. major


expression library described above. Positive clones were compared by restriction enzyme digestion and the clone with the largest insert (pfl1-1) was chosen for subsequent analysis.




DNA sequence analyses were performed on an Applied Biosystems automated sequencer using Taq polymerase and dye coupled ddNTP terminators or dye-labeled sequencing primers. The complete sequence of the 2685 bp insert was determined using a combination of primer-directed sequencing and by sequencing a series of overlapping Exonuclease III deletion subclones generated using the Erase-a-base system (Promega, Madison, Wis.). The sequence of this insert is provided in SEQ ID NO: 1, and the deduced amino acid sequence is provided in SEQ ID NO:2.




The complete insert of clone pfl-1 was excised by digestion with BamHI/KpnI and was subcloned in frame into BamHI/KpnI digested pQE31 (QUIAGEN) to generate the construct pM151A.


E. coli


containing this construct inducibly expressed high levels of the


L. major


antigen encoded by pfl1-1 (designated as M15) with the addition of a 6-histidine tag at the amino terminus. Large volume cultures (500 ml) of


E. coli


host cells containing the pM151A construct were induced to express recombinant protein by the addition of 2 mM IPTG at mid-log phase of growth. Growth was continued for 4 to 5 hours and bacteria were then pelleted and washed once with cold PBS. Bacteria were resuspended in 20 ml of lysis buffer (50 mM Na


2


HPO


4


, pH 8.0, 300 mM NaCl, 10 mM β-mercaptoethanol) containing 20 mg of lysozyme and were lysed by a 1 hour incubation at 4° C. followed by brief sonication. Insoluble material was removed by centrifugation at 10,000×g for 10 minutes and although the recombinant protein was found to be evenly distributed between the soluble and insoluble fractions the insoluble material was discarded at this point. Recombinant protein containing the amino terminal histidine tag was affinity purified using Ni-NTA resin (QIAGEN) according to the manufacturer's recommendations. Briefly, 8 ml of Ni-NTA resin resuspended in lysis buffer was added to the soluble lysate fraction and binding was conducted with constant mixing for 1 hour at 4° C. The mixture was then loaded into a gravity flow column and the non-binding material was allowed to flow through. The Ni-NTA matrix was washed 3 times with 25 ml of wash buffer (50 mM Na


2


HPO


4


, pH 6.0, 300 mM NaCl, 10 mM β-mercaptoethanol) and bound material was eluted in 25 ml of elution buffer (50 mM Na


2


HPO


4


, pH 5.0, 300 mM NaCl, 10 mM β-mercaptoethanol). The eluted material was then dialyzed against 3 changes of PBS, sterile filtered and stored at −20° C. The purified recombinant protein was shown by SDS-PAGE analysis to be free of any significant amount of


E. coli


protein. A small number of bands of lower molecular weight were assumed to be proteolytic products of the


L. major


antigen based on their reactivity by western blot analysis. A high titre polyclonal antisera against M15 was generated in rabbits by repeated subcutaneous injection of recombinant protein. Western blot analysis of lysates from


L. major


promastigotes and amastigotes using this antisera indicated that the protein is constitutively expressed throughout the parasite lifecycle.




Example 2




Preparation of Ldp23




This Example illustrates the preparation of a Leishmania antigen Ldp23, having the sequence provided in SEQ ID NO:4.




A. Purification of MHC Class II-associated Peptides From P388D1 Macrophages Infected With


L. donovani






To ascertain that in vitro infection of macrophages would load their MHC class II molecules with parasite peptides, initial experiments were carried out to test the ability of


L. donovani


-infected macrophage cell line P388D1 to present parasite antigens to


L. donovani


specific T-cells. This macrophage cell line was chosen because it has the same H-2 haplotype as the BALB/c mouse, which is a strain of mouse moderately susceptible to


L. donovani


infection and selected to conduct the in vivo experiments. Using a proportion of 3-5 parasites per cell and an initial incubation at room temperature for 4-6 hours follows by 37° C. for 24-48 hours, close to 90% of the macrophages were infected. The level of MHC class II molecule expression, as determined by FACS analysis, indicated that infection did not cause an effect on the levels of MHC class II expression when compared to non-infected control cells.




To test the ability of the


L. donovani


-infected P388D1 cells to present parasite antigens, macrophages were infected as indicated above and incubated at 26° C. for 6 hours, and then as 37° C. for either 24, 48 or 72 hours. At each of these time points the non-adherent cells and free parasites were washed out and the adherent cells were mechanically dislodged, washed and fixed with paraformaldehyde. These cells were then used as antigen presenting cells (APCs) for purified lymph node T-cells from BALB/c mice immunized with


L. donovani


promastigotes. To generate these anti-


L. donovani


specific T-cells, BALB/c mice (H-2


d


) of both sexes (The Jackson Laboratory, Bar Harbor, Me.) were immunized at 8 to 14 weeks of age in the rear foot pad with 5-10×10


6




L. donovani


promastigotes emulsified in complete Freünd's adjuvant (CFA) (Difco Laboratories, Madison, Mich.) as described in Rodrigues et al.,


Parasite Immunol


. 14:49 (1992). The draining lymph nodes were excised 8 days after the immunization and T-cells were purified in an anti-mouse Ig column to remove the B cells, as described in Bunn-Moreno and Campos-Neto,


J. Immunol


. 127:427 (1981), followed by a passage through a Sephadex G10 column to remove the macrophages.




Stimulation index was calculated by dividing the cpm obtained for the cells cultured in the presence of infected P388D1 macrophages by the cpm obtained for the cells cultured in the presence of non-infected macrophages, but subjected to the same conditions as the infected macrophages. The results shown

FIG. 1

indicate that


L. donovani


-infected P388D1 macrophage process parasite antigens and that optimal presentation occurs after 48 hours of infection. No stimulation of the T-cells by the non-infected macrophages was observed.




To isolate the MHC class II associated


L. donovani


peptides, P388D1 macrophages were infected with


L. donovani


promastigotes for an initial incubation of 6 hours at room temperature. The cultures were then transferred to 37° C. for the remainder of the 48 hour incubation period. At a ratio of 3-5 parasites per macrophage nearly 90% of the macrophages were infected after 24 hours of incubation at 37° C.




The MHC class II molecules were then affinity-purified. Approximately 1.5×10


10




L. donovani


-infected or an equal number of non-infected P388D1 macrophages were used for each purification. The cells were harvested, washed with PBS and incubated for 30 minutes in cold lysis buffer (PBS, 1% Nonidet P40, 25 mM iodoacetamide, 0.04% sodium azide, 1 mM aprotinin and 1 mM PMSF). The insoluble material was removed by centrifugation at 40,000g for 1 hour and the supernatant was recycled overnight at 4° C. over a 5ml anti-MHC class II molecules (H-2


d


) Sepharose column (Protein G Sepharose column to which the monoclonal antibody MK-D6 has been bound). Culture supernatants of MK-D6 hybridoma cells (American Type Culture Collection, Rockville, Md.) were employed as the source for anti-MHC class II (H-2


d


) monoclonal antibody. The column was washed with 50 ml of lysis buffer and then with 50 ml of PBS containing 0.5% octyl glucopyranoside detergent. Bound molecules were eluted from the column with 1M acetic acid in 0.2% NaCl. The MHC/peptide molecules were separated from the IgG (MK-D6 monoclonal antibody) using a Centricon 100 filter unit (Amicon Division, W.R. Grace & Co., Beverly, Mass.). The peptides were then dissociated from the class II molecules by the addition of acetic acid to 2.5M, followed by separation using a Centricon 10 filter unit. The resulting peptide preparation, present in the low molecular weight sample, was then dried using a speed vac concentrator (Savant Instrument Inc., Farmingdale, N.Y.).




The peptides were redissolved in 200 μl of 0.05% TFA and separated by reverse-phase high performance liquid chromatography (RP-HPLC) using a 2.1 mm×25 cm Vydac C-18 column at a flow rate of 0.15 ml/min employing a 1 to 30% acetonitrile gradient (60 min) followed by a 30 to 60% gradient (30 min) and then a 60 to 80% gradient (90-110 min). Non-infected P388D1 cells were similarly processed to serve as background control for endogenous MHC class II associated peptides.

FIG. 2

shows a representative experiment; four distinct peaks which are present only in the material isolated from infected macrophages (panel B), and not in the material isolated from uninfected macrophages (panel A) are indicated.




Out of three independent peptide extractions, twenty five distinct HPLC peptide peaks were isolated from


L. donovani


-infected macrophages and were subjected to protein sequence analysis using automated Edman degradation on an Applied Biosystems 477 gas-phase protein sequencer. Protein sequence and amino acid analysis were performed by the W.M. Keck Foundation, Biotechnology Resource Laboratory, Yale University, New Haven, Conn. In practically all determinations, no assignment could be made for the first position. Also, in most cases the definition of the amino acid residues of the 10-15 positions was based on the quantitative dominance of one residue over others. Using this approach, the sequences obtained for several peptides showed the presence of 3-6 different residues in many of the 10-15 sequence cycles analyzed for each determination, reflecting a mixture of peptides. In addition, sequences could not be obtained for some peaks because the peptides were blocked. Notwithstanding, three peptides sequences were determined. Amino-acid sequences were searched for identity with proteins in the GenBank database using the GENPETP, PIR and SWISSPROT programs. The sequence data base analysis revealed that one of the peptides was highly homologous to glyceraldehyde-3-phosphate dehydrogenase of various species. Another peptide had homology with elongation factor of several species, including Leishmania. The third sequence was not clearly related to any known proteins, and is shown below:




XQXPQ(L/K)VFDEXX (SEQ ID NO: 11).




B. Cloning and Sequencing of the Ldp23 Gene




In order to retrieve the


L. donovani


protein that was processed into a peptide associated with the MHC class II molecules of infected macrophages, the peptide sequence of uncertain origin was chosen to guide the strategy for cloning the corresponding parasite gene. A DNA fragment was initially amplified from


L. donovani


promastigote cDNA by PCR. The sense primer was a peptide derived oligonucleotide (5′>


GGAATTCC


CCInCAGCTInGTInTTCGAC<3′) (SEQ ID NO:12) containing an EcoRI restriction endonuclease site (underlined). The bases were selected following the preferential codon usage of


L. donovani


, as described in Langford et al.,


Exp. Parasitol


. 74:360 (1992). Inosine was used for the residues of positions 4, 6 and 7 because of the low codon usage assurance for the corresponding amino acids. In addition, the carboxyl-terminal L-glutamic acid was not included for the design of the primer. The antisense primer was a poly-thymidine oligonucleotide (oligo dT, downstream primer) containing a XhoI restriction endonuclease site.




The gene fragment was amplified from a


L. donovani


promastigote cDNA preparation using the following reaction conditions: one cycle of 3 min at 94° C. immediately followed by 35 cycles of 1 min at 94° C., 1 min at 45° C. and 1 min at 72° C. The


L. donovani


cDNA was prepared from 5×10


7


washed promastigote forms harvested at the log growth phase (3 days culture). The cDNA was obtained using an Invitrogen cDNA cycle™ kit (Invitrogen Co., San Diego, Calif.). Oligonucleotide primers were synthesized by the DNA Synthesis Laboratory, Department of Pathology, Yale University School of Medicine.




The PCR products were analyzed by gel electrophoresis. Only one band of approximately 300 bp was obtained. This fragment was cloned and its sequence confirmed the sequence of the peptide-based primer including the glutamic acid codon, deliberately not included in the primer sequence.




The PCR amplified gene fragment was ligated into the pCR™ vector using the TA cloning system (Invitrogen Co., San Diego, Calif.). Transformants were selected in LB medium containing 100 μg/ml ampicillin and the plasmid DNA was isolated using the Wizard™ Minipreps DNA purification kit (Promega Co., Madison, Wis.). Insert DNA was released with the restriction enzymes EcoRI and XhoI (New England Biolabs, Beverly, Mass.), purified from an agarose gel electrophoresis and labeled with


32


P using a random priming method (Megaprime Labeling Kit, Amersham Life Science, Buckinghamshire, England).




This DNA fragment was used as probe to screen a


L. donovani


promastigote cDNA library as described in Skeiky et al.,


Infect. Immun


. 62:1643 (1994). An approximately 650 bp cDNA (Ldp23) was excised from the phagemid by in vivo excision using the Stratagene protocol. DNA sequencing was performed using the Sequenase version 2 system (DNA sequencing kit) in the presence or absence of 7-deaza-GTP (United States Biochemical, Cleveland, Ohio). The sequence is provided as SEQ ID NO:3, and shows complete homology with the original 300 bp PCR fragment. A 525 bp open reading frame containing an ATG codon that follows the last 4 bases of the spliced leader sequence and 3 stop codons adjacent to the poly A tail was identified. This frame also codes the carboxyl terminal sequence (KVFDE) (SEQ ID NO:13) of the purified MHC class II associated peptide. The sequence analysis of the deduced protein sequence revealed one potential glycosylation site (Asn-Cys-Ser) at positions 68-70.




Sequence analysis was performed using the University of Wisconsin Genetics Computer Group Programs and the GenBank and EMBL data bases of protein and DNA sequences. The search for homology of the Ldp23 gene with known sequences revealed no significant homology.




C. Bacterial Expression and Purification of Recombinant Protein




The recombinant


L. donovani


peptide donor protein was produced in


E. coli


transformed with the pGEX 2T expression vector in which the Ldp23 gene was subcloned in frame. PCR was used to subclone the cloned gene in frame into the expression vector pGEX 2T. Primers containing the appropriate restriction site enzymes, initiation and termination codons were: 5′>


GGATCC


ATGGTCAAGTCCCACTACATCTGC<3′ (SEQ ID NO: 14) for the upstream primer and 5′>


GAATTC


AGACCGGATAGAAATAAGCCAATGAAA<3′ (SEQ ID NO: 15) for the downstream primer (restriction sites of BamHI and EcoRI are underlined respectively). PCR conditions were as indicated above for the amplification of the original peptide related DNA fragment. The template used was pBluescript plasmid containing the cloned gene from the cDNA library.




Overexpression of the recombinant fusion protein was accomplished by growing the transformed


E. coli


(DH5α) and inducing the tac promoter with 1 mM isopropyl-β-thiogalactopyranoside (IPTG) (Stratagene, La Jolla, Calif.). Cells were collected, centrifuged, and analyzed for the presence of the fusion protein by SDS-PAGE. A glutathione-S-transferase fusion protein of 43-44 kD was produced, indicating a leishmanial protein of approximately 18 kD, as glutathione-S-transferase (GST) has a MW of 26 kD. However, the fusion protein was very insoluble and therefore could not be purified by affinity chromatography using a glutathione column. The use of low concentrations of detergents like SDS, sarcosyl, deoxycolate, and octyl-glucopyranoside during the extraction steps was efficient to solubilize the protein but unfortunately prevented its binding to the glutathione column. Other maneuvers, such as the growth of the


E. coli


and incubation and induction of the tac promoter with IPTG at 33° C., did not improve the protein solubility. However, the purification was achieved by preparative SDS-PAGE. The band was visualized with 0.1 M KCl, cut and electroeluted from the gel followed by extensive dialysis against PBS and concentration on Centricon 10 filters.




Approximately 500 μg of purified protein was obtained. The purified protein is shown in FIG.


3


. In panel A,


E. coli


(DH5α) transformed with the expression vector pGEX 2T containing the Ldp23 gene was grown in LB medium and the tac promoter was induced with IPTG for 3 hours. The cells were pelleted, resuspended in loading buffer and submitted to SDS-PAGE (10%) under reducing condition. The gel was stained with Coomassie blue. Lane 1 shows the uninduced


E. coli


and land 2 shows the induced


E. coli


. The arrow indicates the recombinant protein. Panel B shows the protein prepared as in panel A and submitted to a preparative SDS-PAGE. The band corresponding to the overexpressed recombinant fusion protein was identified by KCl, cut out, electroeluted from the gel strip, dialyzed against PBS and submitted to analytical SDS-PAGE (12%). Numbers on the left side indicate the molecular weights of the markers. Attempts to further purify the leishmanial protein by cleaving it out from the fusion protein GST with thrombin were unsuccessful.




D. Expression of Ldp23




To ascertain that the Ldp23 peptide is expressed in Leishmania organisms, a Northern blot analysis was performed using RNA prepared from different promastigote growth phases (logarithmic and stationary) and from the amastigote form of these parasites.




The RNA was prepared from 2×10


7


parasite cells using the Micro RNA isolation kit (Stratagene, La Jolla, Calif.) according to the company's recommended instructions. RNA was prepared from


L. donovani


promastigotes (logarithmic growth phase); from


L. major


promastigotes (logarithmic and stationary growth phases); from


L. amazonensis


, both promastigotes (logarithmic and stationary growth phases) and amastigotes purified from CBA/J infected mice; and from


L. pifanoi


, both promastigotes (logarithmic and stationary growth phases) and amastigotes (from axenic culture medium).


L. donovani


(1S strain),


L. amazonensis


(MHOM/BR/77/LTB0016),


L. major


(MHOM/IR/79/LRC-L251) and


L. pifanoi


(MHOM/VE/60/Ltrod) promastigotes were grown and maintained at 26° C. in Schneider's medium containing 20% FCS and 50 μg/ml gentamicin. The amastigote forms of


L. amazonensis


were obtained by differential centrifugation of a “pus-like” foot pad lesion of a CBA/J mouse infected for 6 months with this parasite.


L. pifanoi


amastigotes were obtained from axenic culture as previously reported by Pan et al.,


J. Euk. Microbiol


. 40:213 (1993).




The hybridization was carried out at 45° C. in the presence of 50% formamide, 5×Denhardt's solution, 0.1% SDS, 100 μg/ml single stranded salmon sperm DNA and 5×SSPE using 0.45 μm Nytran membrane filters (Schleicher & Schuell, Keene, NH). The probe was the


32


P labeled Ldp23 gene.





FIG. 4

shows that one single RNA band of 680 bp was observed for all growth phases and forms of all tested Leishmania. Within

FIG. 4

, the numbers 1, 2 and 3 refer to RNA obtained from promastigotes at the logarithmic growth phase, promastigotes at the stationary growth phase and amastigote forms, respectively, and the numbers on the left side indicate the molecular weights of the markers in base pairs. This result is consistent with the corresponding gene size (525 bp) and with the molecular weight of the expressed protein and points to the ubiquitous distribution and expression of this gene within the genus Leishmania.




E. Induction of Anti-


L. donovani


Antibody Response in Mice and Rabbits by Purified Recombinant Protein




In order to evaluate the immunogenicity of the recombinant leishmanial protein, and to investigate its expression in the parasites, mice and rabbits were immunized with the GST-fusion protein in CFA. BALB/c mice were immunized in the rear foot pad with 5-10 μg of protein emulsified in CFA. Protein concentration was determined using the Bio-Rad Protein Assay reagent (Bio-Rad Laboratories, Richmond, Calif.). The mice were boosted 7 days later with 5-10 μg of protein emulsified in incomplete Freünd's adjuvant (IFA) inoculated into the peritoneal cavity. The mice were bled 7 days after the second immunization. New Zealand white rabbits (Millbrook Farm, Amherst, Mass.) were immunized according to the following protocol: one intramuscular (IM) injection of 25-30 μg of purified recombinant protein emulsified in CFA into each thigh on day one; one IM injection of 25-30 μg of purified protein emulsified in IFA into each shoulder on day 7; on day 15, 25-30 μg of the purified protein in PBS was injected into the subcutaneous tissue. The rabbit was bled 7 days after the last immunization.




Sera were prepared and the anti-Leishmania antibody response was measured by Western blot analysis and by FACScan. In both cases


L. donovani


promastigotes were used as antigen. Approximately 2×10


6




L. donovani


promastigotes were grown in Schneider's medium for 3 days (log phase), were washed with PBS, lysed with SDS-PAGE loading buffer and submitted to electrophoresis under reducing conditions using a 15% polyacrylamide gel. The proteins were transferred onto 0.45μ Immobilon-P transfer membrane (Millipore Co., Bedford, Mass.) using a wet-type electroblotter (Mini Trans-Blot Electrophoretic Transfer Cell, Bio Rad Life Science Division, Richmond, Calif.) for 2 hours at 50 V. The membranes were blocked overnight at room temperature with PBS containing 3% normal goat serum (NGS), 0.2% Tween-20 and 0.05% sodium azide, followed by 3 washes with PBS. The blots were then incubated for 3-4 hours at 4° C. with a 1/200 dilution of pre-immune rabbit serum (lane A,

FIG. 5

) or with the same dilution of anti-fusion protein rabbit antiserum (lane B, FIG.


5


). The sera was previously absorbed 2× with non-viable desiccated


Mycobacterium tuberculosis


H-37 RA (Difco Laboratories, Detroit, Mich.) and were diluted in PBS containing 1% NGS and 5% powdered non-fat bovine milk (Carnation, Nestl{dot over (e)} Food Company, Glendale, Calif.). The membranes were then washed with PBS, incubated for 1 hour at room temperature with goat anti-rabbit IgG antibody conjugated with alkaline phosphatase (Promega, Madison, Wis.), washed once with PBS and 2× with veronal buffer pH 9.4. The reaction was visualized using the substrate mixture 5-bromo-4-chloro-3-indoyl-phosphate and nitroblue tetrazoli um (Kirkegaard & Perry Laboratories Inc., Gaithersburg, Md.) according to the manufacturer's instructions.





FIG. 5

shows that the rabbit anti-recombinant protein antiserum detects a single protein of 23 kDa (Ldp23) in the Leishmania crude extract antigen preparation. No bands were observed when an anti-GST antiserum was used (not shown). Moreover, the FACScan analysis (

FIG. 6

) shows that the antibody induced by the recombinant Ldp23 reacts with intact live


L. donovani


promastigotes, thus pointing to a cell surface expression of this molecule on these organisms. The dotted line in

FIG. 6

shows the indirect immunofluorescence performed using pre-immune mouse serum and the solid line in

FIG. 6

shows the result obtained with mouse anti-GST-Ldp23 antiserum. Both sera were diluted at 1/100. Parasites were washed with staining buffer and incubated with FITC conjugated goat anti-mouse immunoglobulin antibody. Fluorescence intensity was analyzed by FACScan.




F. Recognition of Recombinant Ldp23 by Leishmania-specific Lymph Node T-cells




To test the responsiveness of T-cells to the Ldp23 protein, two sets of experiments were performed. In the first experiment, lymph node T-cells (10


5


/well) from BALB/c mice immunized with


L. donovani


promastigotes (as described above) were stimulated to proliferate with 2×10


5


Mitomycin C-treated normal mononuclear spleen cells (APC) and pulsed with the purified recombinant fusion protein. Proliferation of T-cells was measured at 72 hours of culture. Values are expressed in

FIG. 7

as cpm and represent the mean of [


3


H]TdR incorporation of triplicate cultures. Background cpm of cells (T cells+APC) cultured in the presence of medium alone was 1291.

FIG. 7

shows that Leishmania specific T-cells proliferate well and in a dose response manner to recombinant Ldp23. No response was observed when purified GST was added instead of the recombinant fusion protein nor when lymph node T-cells from mice immunized with CFA alone were stimulated to proliferate in the presence of the Leishmanial fusion protein (not shown).




The recognition of the recombinant Ldp23 protein by Leishmania-specific T-cells was also tested using two murine models of leishmaniasis, the


L. major


highly susceptible BALB/c mice and the


L. amazonensis


susceptible CBA/J mice as described in Champsi and McMahon-Pratt,


Infect. Immun


. 56:3272 (1988). These models were selected to investigate the cytokine pattern induced by Ldp23. In the mouse model of leishmaniasis, resistance is associated with Th1 cytokines while susceptibility is linked to Th2 responses.




Lymph node cells were obtained 3 weeks after the initiation of infection of BALB/c mice with


L. major


and the ability of these cells to recognize the recombinant Ldp23 was measured by proliferation and by the production of the cytokines IFN-γ and IL-4. 2×10


6


cells obtained from the draining popliteal lymph node of infected mice were cultured for 72 hours in the presence of recombinant Ldp23 or Leishmania lysate. The levels of IFN-γ and IL-4 in culture supernatants were measured by ELISA as previously described (Chatelain et al.,


J. Immunol


. 148:1172 (1992), Curry et al.,


J. Immunol. Meth


. 104:137 (1987), and Mossman and Fong,


J. Immunol. Meth


. 116:151 (1989)) using specific anti IFN-γ and IL-4 monoclonal antibodies (PharMingen, San Diego, Calif.).




Ldp23 did stimulate these cells to proliferate (not shown) and induced a typical Th1 type of cytokine response as indicated by the production of high levels of IFN-γ (panel A of

FIG. 8

) and no IL-4 (panel B of FIG.


8


). Stimulation of these cells with a Leishmania crude lysate yielded a mixed Th cytokine profile. Exactly the same pattern of cytokine production was obtained from the CBA/J mice infected with


L. amazonensis


(not shown). These results clearly indicate that Ldp23 is a powerful and selective activator of the Th1 cytokines by mouse cells.




Example 3




Preparation of Hsp83




This Example illustrates the preparation of a Leishmania antigen Hsp83, having the sequence provided in SEQ ID NO:6.




A genomic expression library was constructed with sheared DNA from


L. braziliensis


(MHOM/BR/75/M2903) in bacteriophage λZAP II (Stratagene, La Jolla, Calif.). The expression library was screened with


Escherichia coli


preadsorbed serum from an


L. braziliensis


-infected individual with ML. Immunoreactive plaques were purified, and the pBSK(−) phagemid was excised by protocols suggested by the manufacturer. Nested deletions were performed with exonuclease III to generate overlapping deletions for single-stranded template preparations and sequencing. Single-stranded templates were isolated following infection with VCSM13 helper phage as recommended by the manufacturer (Stratagene, La Jolla, Calif.) and sequenced by the dideoxy chain terminator method or by the Taq dye terminator system using the Applied Biosystems automated sequencer model 373A.




Recombinant antigens produced by these clones were purified from 500 ml of isopropyl-β-D-thiogalactopyranoside (IPTG)-induced cultures as described in Skeiky et al.,


J. Exp. Med


. 176:201-211 (1992). These antigens were then assayed for the ability to stimulate PBMC from Leishmania-infected individuals to proliferate and secrete cytokine. Peripheral blood was obtained from individuals living in an area (Corte de Pedra, Bahia, Brazil) where


L. braziliensis


is endemic and where epidemiological, clinical, and immunological studies have been performed for over a decade, and PBMC were isolated from whole blood by density centrifugation through Ficoll (Winthrop Laboratories, New York, N.Y.). For in vitro proliferation assays, 2×10


5


to 4×10


5


cells per well were cultured in complete medium (RPMI 1640 supplemented with gentamicin, 2-mercaptoethanol, L-glutamine, and 10% screened pooled A+ human serum; Trimar, Hollywood, Calif.) in 96-well flat-bottom plates with or without 10 μg of the indicated antigens per ml or 5 μg of phytohemagglutinin per ml (Sigma Immunochemicals, St. Louis, Mo.) for 5 days. The cells were then pulsed with 1 μCi of [


3


H]thymidine for the final 18 h of culture. For determination of cytokine production 0.5 to 1 ml of PBMC was cultured at 1×10


6


to 2×10


6


cells per ml with or without the Leishmania antigens for 48 and 72 h.




The supernatants and cells were harvested and analyzed for secreted cytokine or cytokine mRNAs. Aliquots of the supernatants were assayed for gamma interferon (IFN-γ), tumor necrosis factor alpha (TNF-α), interleukin-4 (IL-4), and IL-10 as described in Skeiky et al.,


J. Exp. Med


. 181:1527-1537 (1995). For cytokine mRNA PCR analysis, total RNA was isolated from PBMC and cDNA was synthesized by using poly(dT) (Pharmacia, Piscataway, N.J.) and avian mycloblastosis virus reverse transcriptase. Following normalization to β-actin, diluted cDNA was amplified by PCR using Taq polymerase (Perkin-Elmer Cetus, Foster City, Calif.) with 0.2 μM concentrations of the respective 5′ and 3′ external primers in a reaction volume of 50 μl. The nucleotide sequences of the primary pairs and the PCR conditions used were as described in Skeiky et al.,


J. Exp. Med


. 181:1527-1537 (1995). We verified that our PCR conditions were within the semiquantitative range by initially performing serial dilutions of the cDNAs and varying the number of cycles used for PCR. Plasmids containing the human sequences for IL-2, IFN-γ, IL-4, IL-10, and β-actin were digested, and the DNA inserts were purified after separation on 1% agarose gels. Radiolabeled


32


P probes were prepared by the random priming method. PCR products were analyzed by electrophoresis on 1.5% agarose gels, transferred to nylon membranes, and probed with the appropriate


32


P-labeled DNA insert.




A recombinant clone was identified in the above assays which, following sequence comparison of its predicted amino acid sequence with sequences of other proteins, was identified as a


Leishmania braziliensis


homolog of the eukaryotic 83 kD heat shock protein (Lbhsp83). The sequence of the clone is provided in SEQ ID NO:5 and the deduced protein sequence is provided in SEQ ID NO:6. On the basis of the homology, this clone, designated Lbhsp83a, appears to lack the first 47 residues of the full length 703 amino acid residues. Lbhsp83 has an overall homology of 94% (91% identity and 3% conservative substitution), 91% (84% identity and 7% conservative substitution) and 77% (61% identity and 16% conservative substitution) with


L. amazonensis


hsp83


, T. cruzi


hsp83 and human hsp89, respectively. A second clone (designated Lbhsp83b), which contained the 43 kD C-terminal portion of hsp83 (residues 331 to 703) was also isolated.

FIG. 19

presents a comparison of the Lbhsp83 sequence with


L. amazonensis


hsp83(Lahsp83),


T. cruzi


hsp83 (Tchsp83) and human hsp89 (Huhsp89).




The results of proliferation assays using Lbhsp83a are shown in Table 1. Cells from all mucosal leishmaniasis (ML) patients proliferated strongly in response to Lbhsp83a, with stimulation indices (SIs) ranging from 19 to 558 (as compared to 20 to 1,634 for parasite lysate). Proliferation of PBMC from cutaneous leishmaniasis (CL) patients was variable and except for levels in two patients (IV and VII), levels were significantly lower than those of ML patients. By comparison, the proliferative responses of individuals with self-healing CL to Lbhsp83a were similar to those of individuals with ML. However, the responses of all six self-healing individuals to Lbhsp83 were consistently higher than those to Lbhsp83b. This suggests that PBMC from self-healing CL patients preferentially recognize one or more T-cell epitopes located within the amino portion of Lbhsp83.












TABLE 1













In vitro


Proliferation of PMBC from


L. braziliensis


-infected Individuals






in Response to Lbhsp83













Mean [


3


H]thymidine







incorporation [10


3


cpm (SD)], SI with:














Group and









Patient




Lysate




Lbhsp83a




Lbhsp83b









ML









I




41.3, (1.3), 294




32.5, (6.6), 221




46.7, (1.4), 318






II




44.2, (0.5), 104




20, (3.7), 47




36.7, (0.76), 86






III




27.4, (1.5), 150




8.1, (1.7), 44




9.9, (0.32), 54






IV




52.7, (3.3), 138




54.1, (6.2), 142




32.0, (1.3), 84






V




140.6, (7.6), 308




151.8, (57), 333




150.4, (7.9), 331






VI




15.8, (1.8), 20




21.3, (4.4), 28




14.4, (1.3), 19






VII




300.1, (9.4), 1634




102.1, (7.6), 558




41.7, (4.9), 228






CL






I




0.26, (0.0), 1.5




0.57, (0.3), 3.3




0.43, (0.17), 3.3






II




55.63, (8.6), 218




0.42, (0.0), 1.6




0.8, (0.14), 3.2






III




0.39, (0.5), 4.0




3.4, (0.5), 9




2.6, (0.9), 6.6






IV




19.14, (1.3), 87




7.17, (0.6), 32




5.9, (0.9), 27






V




0.32, (0.2), 3.0




1.47, (0.5), 14




0.3, (0.1), 3.0






VI




0.77, (0.1), 4.7




1.44, (0.2), 9




1.3, (0.6), 8.0






VII




4.01, (1.0), 2.0




60.3, (8.5), 15




66.7, (3.9), 16.6






Self-healing






CL






I




19.7, (4.4), 94




61.3, (4.6), 293




5.0, (2.0), 24






II




0.6, (0.1), 6.5




7.0, (2.0), 79




1.2, (0.8), 13






III




59.6, (7.1), 519




49.4, (3.1), 429




21.4, (3.7), 186






IV




0.2, (0.1), 1.6




13.1, (1.7), 108




0.6, (0.1), 5






V




27.1, (2.0), 225




6.3, (2.6), 52




3.0, (1.5), 25






VI




130.3, (14), 340




28.2, (2.9), 74




7.7, (3.8), 20






Control






(uninfected)






I




0.19, (0.0), 1.4




0.18, (0.0), 1.3




0.40, (0.16), 2.8






II




0.31, (0.1), 1.7




0.19, (0.0), 1.0




0.27, (0.0), 1.5






III




0.44, (0.2), 4.1




0.48, (0.1), 5.0




0.51, (0.2), 5.2






IV




0.4, (0.1), 3.2




0.52, (0.2), 5.1




0.50, (0.1), 5.0














A more detailed analysis of cytokine patterns of PBMC from ML patients was performed by reverse transcriptase PCR. Cytokine mRNAs were evaluated in cells prior to culturing (

FIG. 9

, lanes O) or following culturing in the absence (lanes −) or presence of the indicated antigen for 48 and 72 h.

FIG. 4A

shows the results for five of the six ML patients whose PBMC were analyzed. In about half of the ML patients, noncultured (resting) PBMC had detectable levels of mRNA for IFN-γ, IL-2, and IL-4 but not IL-10. CL patient PBMC, however, had IL-10 mRNA in the resting state in addition to mRNAs for the other cytokines tested (FIG.


4


B). Following in vitro culture without antigen, the levels of mRNA for IFN-γ, IL-2, and IL-4 in resting cells from ML patients decreased to background levels while IL-10 mRNA levels increased. In contrast, PBMC of most CL patients had stable or increased IL-10 mRNA, while the mRNAs for IL-2, IFN-γ, and IL-4 were reduced to barely detectable levels in the absence of antigen stimulation.




In PBMC of three ML patients, stimulation with lysate resulted in increased expression of mRNA for IFN-γ, IL-2, and IL-4 but not IL-10. By comparison, both Lbhsp83 polypeptides elicited the production of mRNA for IFN-γ and IL-2 from all ML patient PBMC tested. In contrast, profiles of mRNA for IL-10 and IL-4 differed for the two hsp83 polypeptides. Lbhsp83a stimulated the production of IL-10 but not IL-4 mRNA (patients I, II, III, and IV), while Lbhsp83b stimulated the production of IL-4 but not IL-10 mRNA in all six patients.




All CL patients tested responded to both Lbhsp83 polypeptides as well as to the parasite lysate by upregulating the synthesis of mRNAs for IL-2 and IFN-γ, and in two of four patients (I and IV), the level of IL-4 mRNA also increased, indicating stimulation of both Th1 and Th2 cytokines. Interestingly and as in the case of ML patient uncultured PBMC which did not have detectable levels of IL-10 mRNA, Lbhsp83a and not Lbhsp83b stimulated PBMC from one CL patient (IV) to synthesize IL-10 mRNA. However, in the other three patients (I, II, and III) with resting levels of IL-10 mRNA, both rLbhsp83 polypeptides as well as the parasite lysate downregulated the expression of IL-10 mRNA.




PBMC supernatants were also assayed for the presence of secreted IFN-γ, TNF-α, IL-4, and IL-10. Cells from all ML and self-healing CL patients (seven and six patients, respectively) and from four of seven CL patients were analyzed for secreted IFN-γ following stimulation with both rLbhsp83 polypeptides, parasite lysate and Lbhsp70, an


L. braziliensis


protein homologous to the eukaryotic 70 kD heat shock protein (FIG.


10


A). In general, rLbhsp83a stimulated patient PBMC to secrete higher levels of IFN-γ than did rLbhsp83b (0.2 to 36 and 0.13 to 28 ng/ml, respectively). The presence of secreted IFN-γ correlated well with the corresponding mRNA detected by PCR.




PBMC from four of five ML patients (I, II, V, and VII) had supernatant TNF-β levels (0.8 to 2.2 ng/ml) higher than those detected in cultures of PBMC from uninfected controls following stimulation with parasite lysate (FIG.


10


B). Similarly, the same PBMC were stimulated by rLbhsp83 to produce levels of TNF-α in supernatant ranging from 0.61 to 2.9 ng/ml. Compared with those of uninfected controls, PBMC from three (I, V, and VI), five (I, II, IV, V, and VI), and two (II and V) of six individuals analyzed produced higher levels of TNF-α in response to parasite lysate, rLbhsp83a, and rLbhsp83b, respectively. The levels of TNF-α produced by PBMC from CL patients in response to parasite lysate were comparable to those produced by uninfected controls. However, rLbhsp83 stimulated TNF-α production in the PBMC of two of these patients. rLbhsp83a stimulated higher levels of TNF-α production than did rLbhsp83b. In the absence of antigen stimulation, only PBMC from MLpatients (five of six) produced detectable levels of supernatant TNF-α (60 to 190 pg/ml).




In agreement with the IL-10 mRNA, IL-10 was detected by ELISA in the antigen-stimulated PMBC culture supernatants from ML and CL patients. The levels (49 to 190 pg) were significantly higher (up to 10-fold) following stimulation with rLbhsp83a compared with those after parallel stimulation of the same cells with rLbhsp83b (FIG.


11


). Parasite lysate also stimulated PMBC from some of the patients to produce IL-10. Although rLbhsp83 stimulated PMBC from uninfected individuals to produce IL-10, with one exception, the levels were lower than those observed with patient PMBC. IL-4 was not detected in any of the supernatants analyzed. Therefore, the level of any secreted IL-4 is below the detection limit of the ELISA employed (50 pg/ml). Taken together, the results demonstrate that a predominant Th1-type cytokine profile is associated with PMBC from


L. braziliensis


-infected individuals following stimulation with rLbhsp83 polypeptides.




To determine the correlation between the observed T-cell responses and antibody production to Lbhsp83, we compared the antibody (immunoglobulin G) reactivities to Lbhsp83 in sera from the three patient groups (FIG.


12


). The ELISA reactivities of ML patient sera with rLbhsp83a were comparable to those observed with parasite lysate, and in general, there was a direct correlation between ML patient anti-Lbhsp83 antibody titer and T-cell proliferation. Of 23 serum samples from ML patients analyzed, 22 were positive (˜96%) with absorbance values of 0.20 to >3.0. Eleven of the ML patient serum samples had optical density values that were >1. In general, CL patients had significantly lower anti-Lbhsp83 antibody titers






(


=
0.74

;






standard





error





of





the






mean




[

S





E





M

]


=
0.1


)










compared to those of ML patients. Therefore, ML and CL patient anti-rhsp83 antibody titers correlated with their respective T-cell proliferative responses. Anti-rLbhsp83 antibody titers were significantly higher in patients with ML






(


=
1.5

;


S





E





M

=
0.2


)










than in self-healing CL patients







(


=
0.35

;


S





E





M

=
0.056


)

,










although their T-cell proliferative responses were similar. In fact, anti-Lbhsp83 antibody titers in serum from self-healing CL patients were comparable to those from uninfected controls








(


=
0.24

;


S





E





M

=
0.028


)

.















By using 2 standard deviations greater than the mean absorbance value of uninfected control (0.484) as a criterion for positive reactivity to Lbhsp83, eight of nine of the self-healing patient serum samples tested were negative.




Example 4




Preparation of Clones Encoding Lt-210




This Example illustrates the preparation of clones encoding portions of the Leishmania antigen Lt-210, and which has the sequence provided in SEQ ID NO:8.




An expression library was constructed from


L. tropica


(MHOM/SA/91/WR1063C) genomic DNA. The DNA was isolated by solubilizing


L. tropica


promastigotes in 10 mM Tris-HCl, pH 8.3, 50 mM EDTA, 1% SDS and treating with 100 μg/ml RNaseA and 100μg/ml proteinase K. The sample was then sequentially extracted with an equal volume of phenol, phenol:chloroform (1:1), and Chloroform. DNA was precipitated by adding 0.1 volume of 3M sodium acetate (pH 5.2) and 2.5 volume 95% ethanol. The precipitate was resuspended in 10 μM Tris, 1 mM EDTA. DNA was sheared by passage through a 30-gauge needle to a size range of 2-6 kilobase, and was repaired by incubation with DNA poll in the presence of 100 μM each dATP, dCTP, dGTP, and dTTP. EcoRI adapters were ligated to the DNA fragments. After removal of unligated adapters by passage over a G-25 Sephadex™ column, the fragments were inserted in EcoRI cut Lambda ZapII (Stratagene, La Jolla, Calif.).




Approximately 43,000 pfu were plated and screened with sera isolated from viscerotropic leishmaniasis (VTL) patients. Sera from VTL patients were received from Drs. M. Grogl and A. Magill. The VTL patient group included eight individuals from whom parasites were isolated and cultured, seven of which had confirmed infection with


L. tropica


. Four other patients were culture negative, but were still considered to be infected based on either PCR analysis or a positive monoclonal antibody smear (Dr. Max Grogl, personal communication). Serum samples from the 11 infected patients were pooled and anti-


E. coli


reactivity removed by affinity chromatography (Sambrook et al., supra, p. 12.27-12.28). Lambda phage expressing reactive proteins were detected after antibody binding by protein A-horseradish peroxidase and ABTS substrate.




Three clones, Lt-1, Lt-2, and Lt-3, containing a portion of the Lt-210 gene were identified and purified. The clones ranged in size from 1.4 to 3.3 kb and encoded polypeptides of 75 kD, 70 kD, and 120 kD, respectively. These three clones contain partial sequences of the Lt-210 gene. Lt-1 and Lt-2 are overlapping clones and were chosen for further study.




The DNA sequences of Lt-1 and Lt-2 were determined. Exonuclease III digestion was used to create overlapping deletions of the clones (Heinikoff,


Gene


28:351-359, 1984). Single strand template was prepared and the sequence determined with Applied Biosystems Automated Sequencer model 373A or by Sanger dideoxy sequencing. The sequence on both strands of the coding portion of Lt-1 clone was determined. The partial sequence of one strand of Lt-2 clone was determined.




SEQ ID NO:7 presents the DNA sequence of Lt-1, and SEQ ID NO:8 provides the predicted amino acid sequence of the open reading frame. The DNA sequence of the coding portion of the Lt-1 clone includes a repeated nucleotide sequence at the 5′ portion of the clone containing eight copies of a 99 bp repeat, three copies of a 60 bp repeat unit, which is part of the larger 99 bp repeat, and 800 bp of non-repeat sequence. The deduced amino acid sequence of the 99 bp repeat contains limited degeneracies. The mass of the predicted recombinant protein is 67,060 Daltons. A database search of PIR with the predicted amino acid sequence of the open reading frame yielded no significant homology to previously submitted sequences. Predicted secondary structure of the repeat portion of the clone is entirely α-helical.




Sequence analysis of Lt-2 revealed that the 3′ portion of the clone consisted of a mixture of 60 and 99 bp repeats that were identical, excepting occasional degeneracies, to the 60 and 99 bp repeats observed in Lt-1. Collectively, the sequencing data suggest that Lt-1 and Lt-2 are different portions of the same gene, Lt-2 being upstream of Lt-1, with possibly a small overlap.




Hybridization analysis confirmed that rLt-2 and rLt-1 contain overlapping sequences. Genomic DNAs of various Leishmania species were restricted with a variety of enzymes, separated by agarose gel electrophoresis, and blotted on Nytran membrane filter (Schleicher & Schuell, Keene, NH). Inserts from rLt-1 and rLt-2 were labeled with


32


P CTP by reverse transcriptase from random oligonucleotide primers and used as probes after separation from unincorporated nucleotides on a Sephadex G-50 column. Hybridizations using the rLt-1 or the rLt-2 probe are performed in 0.2M NaH


2


PO


4


/3.6 M NaCl at 65° C., whereas hybridization using the rLt-1r probe is performed in 0.2 M NaH


2


PO


4


/3.6 M NaCl/0.2 M EDTA at 60° C. overnight. Filters are washed in 0.075 M NaCl/0.0075 M sodium citrate pH 7.0 (0.15 M NaCl/0.0150 M sodium citrate for the Lt-1r probe), plus 0.5% SDS at the same temperature as hybridization.




Genomic DNA from a number of Leishmania species including


L. tropica


were analyzed by Southern blots as described above using the Lt-1, Lt-2, and Lt-1r inserts separately as probes. Collectively, various digests of


L. tropica


DNA indicate that this gene has a low copy number. A similar, overlapping pattern was observed using either the Lt-1 or Lt-2 insert as a probe, consistent with the premise that these two clones contain sequences near or overlapping one another. In addition, sequences hybridizing with these clones are present in other Leishmania species.






L. tropica


isolates have limited heterogeneity. Southern analyses of digested genomic DNA from four


L. tropica


parasite strains isolated from VTL patients and three


L. tropica


parasite strains isolated from CL cases (two human, one canine) were performed. The Lt-1r insert described below was labeled and used as a probe. The seven different


L. tropica


isolates yielded similar intensities and restriction patterns, with only a single restriction fragment length polymorphism among the isolates. These data, along with Southern analyses with additional enzymes, indicate limited heterogeneity in this region among the


L. tropica


isolates.




The recombinant proteins of Lt-1 and Lt-2 were expressed and purified. The nested deletion set of Lt-1 formed for sequencing included a clone referred to as Lt-1r, which contains one and one-third repeats. This polypeptide was also expressed and purified. In vivo excision of the pBluescript SK





phagemid from Lambda Zap II was performed according to the manufacturer's protocol. Phagemid virus particles were used to infect


E. coli


XL-1 Blue. Production of protein was induced by the addition of IPTG. Protein was recovered by first lysing pellets of induced bacteria in buffer (LB, 50 mM Tris-HCl, pH 8.0, 100 mM NaCl, 10 mM EDTA) using a combination of lysozyme (750 μg/mL) and sonication. rLt-1, rLt-2, and rLt-1r, were recovered from the inclusion bodies after solubilization in 8M urea (rLt-1 and rLt-2) or 4M urea (rLt-1r). Proteins rLt-1 and rLt-2 were enriched and separated by precipitation with 25%-40% ammonium sulfate and rLt-1r was enriched by precipitation with 10%-25% ammonium sulfate. The proteins were further purified by preparative gel electrophoresis in 10% SDS-PAGE. Recombinant proteins were eluted from the gels and dialyzed in phosphate-buffered saline (PBS). Concentration was measured by the Pierce (Rockford, Ill.) BCA assay, and purity assessed by Coomassie blue staining after SDS-PAGE.




Example 5




Preparation of LbeIF4A




This example illustrates the molecular cloning of a DNA sequence encoding the


L. braziliensis


ribosomal antigen LbeIF4A.




A genomic expression library was constructed with sheared DNA from


L. braziliensis


(MHOM/BR/75/M2903) in bacteriophage λZAPII (Stratagene, La Jolla, Calif.). The expression library was screened with


E. coli


-preadsorbed patient sera from an


L. braziliensis


-infected individual with mucosal leishmaniasis. Plaques containing immunoreactive recombinant antigens were purified, and the pBSK(−) phagemid excised using the manufacturer's protocols. Nested deletions were performed with Exonuclease III to generate overlapping deletions for single stranded template preparations and sequencing. Single stranded templates were isolated following infection with VCSM13 helper phage as recommended by the manufacturer (Stratagene, La Jolla, Calif.) and sequenced by the dideoxy chain terminator method or by the Taq dye terminator system using the Applied Biosystems Automated Sequencer Model 373A.




The immunoreactive recombinant antigens were then analyzed in patient T-cell assays for their ability to stimulate a proliferative and cytokine production, as described in Examples 7 and 8 below.




A recombinant clone was identified in the above assays which, following sequence comparison of its predicted amino acid sequence with sequences of other proteins, was identified as a


Leishmania braziliensis


homolog of the eukaryotic initiation factor 4A (eIF4A). The isolated clone (pLeIF.1) lacked the first 48 amino acid residues (144 nucleotides) of the full length protein sequence. The pLeIF.1 insert was subsequently used to isolate the full length genomic sequence.




SEQ ID NO:9 shows the entire nucleotide sequence of the full-length LbeIF4A polypeptide. The open reading frame (nucleotides 115 to 1323) encodes a 403 amino acid protein with a predicted molecular weight of 45.3 kD. A comparison of the predicted protein sequence of LbeIF4A with the homologous proteins from tobacco (TeIF4A), mouse (MeIF4A), and yeast (YeIF4A) shows extensive sequence homology, with the first 20-30 amino acids being the most variable. The lengths (403, 413, 407, and 395 amino acids), molecular weights (45.3, 46.8, 46.4, and 44.7 kDa), and isoelectric points (5.9, 5.4, 5.5, and 4.9) of LbeIF4A, TeIF4A, MeIF4A and YeIF4A, respectively, are similar. LbeIF4A shows an overall homology of 75.5% (57% identity, 18.5% conservative substitution) with TeIF4A, 68.6% (50% identity, 18.6% conservative substitution) with MeIF4A and 67.2% (47.6% identity, 19.6% conservative substitution) with YeIF4A.




Example 6




Preparation of Soluble Leishmania Antigens




This Example illustrates the preparation of soluble Leishmania antigens from an


L. major


culture supernatant.


L. major


promastigotes were grown to late log phase in complex medium with serum until they reached a density of 2-3×10


7


viable organisms per mL of medium. The organisms were thoroughly washed to remove medium components and resuspended at 2-3×10


7


viable organisms per mL of defined serum-free medium consisting of equal parts RPMI 1640 and medium 199, both from Gibco BRL, Gaithersburg, Md. After 8-12 hours, the supernatant was removed, concentrated 10 fold and dialyzed against phosphate-buffered saline for 24 hours. Protein concentration was then determined and the presence of at least eight different antigens confirmed by SDS-PAGE. This mixture is referred to herein as “soluble Leishmania antigens.”




Example 7




Comparison of Interleukin-4 and Interferon-γ Production Stimulated by Leishmania Antigens




This Example illustrates the immunogenic properties of the antigens prepared according to Examples 1, 2, 5 and 6, as determined by their ability to stimulate IL-4 and IFN-γ in lymph node cultures from infected mice and in human PBMC preparations. Lymph node cultures for use in these studies were prepared from


L. major


-infected BALB/c mice 10 days after infection, as described in Example 2. PBMC were prepared using peripheral blood obtained from individuals with cured


L. donovani


infections who were immunologically responsive to Leishmania. Diagnosis of the patients was made by clinical findings associated with at least one of the following: isolation of parasite from lesions, a positive skin test with Leishmania lysate or a positive serological test. Uninfected individuals were identified based on a lack of clinical signs or symptoms, a lack of history of exposure or travel to endemic areas, and the absence of a serological or cellular response to Leishmania antigens. Peripheral blood was collected and PBMC isolated by density centrifugation through Ficoll™ (Winthrop Laboratories, New York).




Culture supernatants were assayed for the levels of secreted IL-4 and IFN-γ. IFN-γ was quantitated by a double sandwich ELISA using mouse anti-human IFN-γ mAb (Chemicon, Temucula, Calif.) and polyclonal rabbit anti-human IFN-γ serum. Human rIFN-γ (Genentech Inc., San Francisco, Calif.) was used to generate a standard curve. IL-4 was quantitated in supernatants by a double sandwich ELISA using a mouse anti-human IL-4 mAb (M1) and a polyclonal rabbit anti-human IL-4 sera (P3). Human IL-4 (Immunex Corp., Seattle, Wash.) was used to generate a standard curve ranging from 50 μg/ml to 1 ng/ml.





FIGS. 13A and 13B

, illustrate the mean level of secreted IL-4 and IFN-γ, respectively, 72 hours after addition of 10 μg/mL of each of the following antigens to a lymph node culture prepared as described above: soluble Leishmania antigen (i.e., an extract prepared from ruptured promastigotes which contains membrane and internal antigens (SLA)), Ldp23, LbeIF4A (LeIF), Lbhsp83, M15 and LmeIF (the


L. major


homolog of LbeIF4A). The levels of secreted IL-4 and IFN-γ in medium alone (i.e., unstimulated) are also shown. While SLA elicits a predominantly Th2 response from lymph node cells of Leishmania-infected mice, Ldp23, LbeIF4A, Lbhsp83 and M15 elicited relatively little IL-4 and large amounts of IFN-γ, consistent with a Th1 response profile.





FIG. 14

shows the level of secreted IFN-γ in culture filtrate from infected and uninfected human PBMC preparations 72 hours after addition of 10 μg/mL


L. major


lysate, M15 or L-Rack, an immunodominant leishmanial antigen in murine leishmaniasis. Similarly,

FIG. 15

illustrates the level of secreted IFN-γ in culture filtrate from infected and uninfected human PBMC preparations 72 hours after addition of 10 μg/mL


L. major


lysate, soluble Leishmania antigens (prepared as described in Example 6) or L-Rack. These results indicate that M15 and soluble Leishmania antigens, but not L-Rack, are potent stimulators of IFN-γ production in patient PBMC, but not in PBMC obtained from uninfected individuals. Thus, M15 and soluble Leishmania antigens elicit a dominant Th1 cytokine profile in both mice and humans infected with Leishmania.




Example 8




Comparison of Proliferation Stimulated by Leishmania Antigens




This Example illustrates the immunogenic properties of the antigens prepared according to Examples 1, 2, 5 and 6, as determined by their ability to stimulate proliferation in lymph node cultures from infected mice and in human PBMC preparations.




For in vitro proliferation assays, 2-4×10


5


cells/well were cultured in complete medium (RPMI 1640 supplemented with gentamycin, 2-ME, L-glutamine, and 10% screened pooled A+ human serum; Trimar, Hollywood, Calif.) in 96-well flat bottom plates with or without 10 μg/ml of the indicated antigens or 5 μg/ml PHA (Sigma Immunochemicals, St. Louis, Mo.) for five days. The cells were then pulsed with 1 μCi of [


3


H] thymidine for the final 18 hours of culture.





FIG. 16

illustrates the proliferation observed after addition of 10 μg/mL or 20 μg/mL of each of the following antigens to a lymph node culture prepared as described in Example 7: SLA, Ldp23, LbeIF4A, Lbhsp83, and M15. The level of proliferation without the addition of antigen is also shown. Data are represented as mean cpm. These results demonstrate that a variety of leishmanial antigens are capable of stimulatory lymph node cell proliferation from Leishmania-infected mice.





FIGS. 17 and 18

illustrate the proliferation observed in human PBMC preparations from Leishmania-immune and uninfected individuals following the addition of 10 μg/mL M15 and soluble Leishmania antigens, respectively. These values are compared to the proliferation observed following the addition of culture medium,


L. major


lysate or L-Rack. The results show that M15 and soluble Leishmania antigens stimulate proliferation in Leishmania-immune PBMC, but not in PBMC obtained from uninfected individuals, demonstrating that M15 and soluble antigens (but not L-Rack) are recognized by PBMC from individuals immune to Leishmania due to a previous infection.




Example 9




Preparation of Lmsp1A and Lmsp9A




This Example illustrates the preparation of two soluble Leishmania antigens, Lmsp1a and Lmsp9a.




A. Purification of Lmsp1a and Lmsp9a From a Mixture of Soluble


L. major


Antigens




A high titer rabbit sera was raised against


L. major


soluble antigens, prepared as described above in Example 6. Specifically, a New Zealand white rabbit was immunized subcutaneously at multiple sites with 180 μg of


L. major


soluble antigens in a suspension containing 100 μg muramyl dipeptide and 50% incomplete Freund's adjuvant. Six weeks later the rabbit was given a subcutaneous boost of 100 μg of the same soluble antigen preparation in incomplete Freund's adjuvant. This was followed by two intravenous boosts spaced two weeks apart, each with 100 μg of the soluble antigen preparation. Sera was collected from the rabbit 11 days after the final boost.




Anti


E. coli


antibody reactivities were removed from the rabbit sera by pre-adsorbing on nitrocellulose filters containing lysed


E. coli


. Adsorbed sera were evaluated by Western blot analysis using 10 μg Leishmania promastigote lysate (lane 1) and 1 μg soluble


L. major


antigen mixture (lane 2). As shown in

FIG. 20

, the rabbit sera was found to be reactive with seven dominant antigens of the soluble


L. major


antigen mixture with molecular weights ranging from 18 to >200 kDa. A four times longer exposure of the same blot revealed three additional immunoreactive species with molecular weights less than 18 kDa. The same sera reacted with approximately 10 antigens of the promastigote lysate, but with a pattern significantly different from that observed with the soluble


L. major


antigens (FIG.


20


). This is suggestive of potential post-translational modification of the same antigen before (intracellular localization) and after secretion/shedding. Such modifications may include cleavage of a leader sequence and/or the addition of carbohydrate molecules to the secreted/shed antigens.




The rabbit sera described above was subsequently used to screen an


L. major


cDNA expression library prepared from


L. major


promastigote RNA using the unidirectional Lambda ZAP (uni-ZAP) kit (Stratagene) according to the manufacturer's protocol. A total of 70,000 pfu of the amplified cDNA library was screened with the rabbit sera at a 1:250 dilution. Nineteen positive clones were confirmed in the tertiary screening. The phagemid were excised and DNA from each of the 19 clones was sequenced using a Perkin Elmer/Applied Biosystems Division automated sequencer Model 373A. All 19 clones were found to represent two distinct sequences, referred to as Lmsp1a and Lmsp9a. The determined cDNA sequences for Lmsp1a and Lmsp9a are provided in SEQ ID NO: 19 and 21, respectively, with the corresponding amino acid sequences being provided in SEQ ID NO: 20 and 22, respectively.




B. Characterization of Lmsp1a and Lmsp9a





FIG. 21

shows the full-length cDNA (SEQ ID NO: 19) and predicted amino acid sequence (SEQ ID NO: 20) for the antigen Lmsp1a. The EcoRI/XhoI insert is 1019 bp long and contains the following features: a) the last 17 nt of the spliced leader sequence characteristic of all trypanosoma nuclearly encoded mRNA; b) 39 nt of 5′ untranslated sequence; c) an open reading frame of 453 nt long coding for a 151 deduced amino acid sequence with a predicted molecular mass of 16.641 kDa; and d) 471 nt of 3′ untranslated sequence terminating with a poly A tail. The predicted amino acid sequence contains three potential phosphorylation sites at amino acid residues 3, 85 and 102. In addition, Lmsp1a contains an RGD sequence at residue 104, a sequence that may play a role in parasite invasion of the macrophage. RGD sequences have been shown to mediate the binding of various adhesion proteins to their cell surface receptors. There is no obvious leader sequence (secretory signal) at the amino terminal portion suggesting that the protein might be shed or excreted. Lmsp1a appears to be one of the most abundant antigens found in the culture supernatant of live promastigote, since 17 of the 19 clones contain sequences of variable lengths identical to Lmsp1a.




Comparison of the amino acid sequence of Lmps1a with known sequences using the DNA STAR system (Version 87) revealed that Lmsp1a shares between 65% to 70% homology with the eukaryotic nucleoside diphosphate kinase protein, also referred to in the mouse and human as a tumor metastasis inhibitor gene.




Southern blot analysis of genomic DNA from


L. major


(Friedlander strain) digested with a panel of restriction enzymes (lanes 1 to 7) and six other Leishmania species of different geographic locations digested with PstI (lanes 8 to 13) using the full-length cDNA insert of Lmps1a, demonstrated that Lmsp1a is present in all the species characterized with a high degree of conservation (FIG.


22


). This suggests evolutionary significance for the maintenance of Lmsp1a and the existence of homologous species among all the Leishmania species.




The remaining two cDNA clones isolated from the soluble


L. major


antigen mixture represent identical sequences (referred to as Lmsp9a; SEQ ID NO: 21), suggesting that the two copies resulted from amplification of the primary library. Sequencing of the Lmsp9a cDNA revealed that the clone does not contain the full length 5′ sequence since it is lacking both the spliced leader and 5′ untranslated sequences. The 3′ end of the cDNA contains a poly A stretch, as would be expected for a Leishmania mRNA. Of the predicted translated sequence (SEQ ID NO: 22), 34 of the 201 amino acids (17%) represent cysteine residues. Comparison of the predicted protein sequence with those of known proteins as described above, revealed some homology with other cysteine rich proteins such as the major surface trophozoite antigen of


Giardia lamblia


and furin proteases.




Example 10




Preparation and Characterization of MAPS-1A




This Example illustrates the preparation and characterization of the Leishmania antigen MAPS-1A (SEQ ID NO: 24).




A pool of sera was obtained from 5 BALB/c mice that had been given a primary immunization and two boosts with crude


L. major


promastigote culture supernatant as described below in Example 12. These mice were subsequently shown to be protected when challenged with a dose of live


L. major


promastigotes generally found to be lethal. The mouse sera thus obtained were used to screen an


L. major


amastigote cDNA expression library prepared as described in Example 1. Several seroreactive clones were isolated and sequenced using a Perkin Elmer/Applied Biosystems Division automated sequencer Model 373A (Foster City, Calif.).




One of these clones, referred to herein as MAPS-1A, was found to be full-length. Comparison of the cDNA and deduced amino acid sequences for MAPS-1A (SEQ ID Nos: 23 and 24, respectively) with known sequences in the gene bank using the DNA STAR system revealed no significant homologies to known Leishmania sequences, although some sequence similarity was found to a group of proteins, known as thiol-specific antioxidants, found in other organisms.




Recombinant MAPS-1A protein having an amino-terminal HIS-Tag was prepared using a high level


E. coli


expression system and recombinant protein was purified by affinity chromatography as described in Example 1. Southern blot analysis of genomic DNA from


L. major


digested with a panel of restriction enzymes, seven other Leishmania species digested with PstI, and two other infectious-disease pathogens (


T. cruzi


and


T. brucei


), using the full length insert of MAPS-1A, demonstrated that MAPS-1A is present in all eight Leishmania species tested (FIG.


23


). Northern blot analysis of


L. major


promastigote and amastigote RNAs indicated that MAPS-1A is constitutively expressed.




Using oligonucleotide primers (SEQ ID NOs:27 and 28) based on the MAPS-1A cDNA sequence provided in SEQ ID NO: 23, the corresponding gene was isolated from


L. tropica


by means of PCR (using 30 cycles of the following temperature step sequence: 94° C., 1 minute; 50° C., 1 minute; 72° C., 1 minute) The determined cDNA sequence for the


L. tropica


MAPS-1A protein is provided in SEQ ID NO: 25, with the corresponding amino acid sequence being provided in SEQ ID NO: 26.




The ability of recombinant MAPS-1A to stimulate cell proliferation was investigated as follows. PBMC from 3


L. braziliensis


-infected patients having active mucosal leishmaniasis, from 4 patients post kala-azar infection (previously infected with


L. chagasi


and/or


L. donovani


) and from 3 uninfected-individuals were prepared as described above in Example 7. The ability of MAPS-1A to stimulate proliferation of these PBMC was determined as described in Example 8 above. As shown in

FIG. 24

, significant levels of MAPS-1A specific PBMC proliferation were seen in 2 of the 7 Leishmania patients.




The ability of MAPS-1A to stimulate proliferation in mice lymph node cultures was determined as described in Example 8.

FIG. 25

shows the amount of proliferation stimulated by MAPS-1A (at 25 μg/ml, 5 μg/ml and 1 μg/ml) as compared to hat stimulated by the positive control ConA and by crude


L. major


promastigote supernatant proteins, 20 days post-infection with


L. major


. Cells isolated 20 days post-infection were highly responsive to MAPS-1A, whereas cells isolated 10 days post-infection were unresponsive.




Example 11




Immunoreactivity of Soluble Leishmania Antigens With Sera From Leishmania-infected Patients




The reactivity of MAPS-1A with sera from uninfected individuals, from human leishmaniasis patients with cutaneous infection, from human patients with acute visceral leishmaniasis, and from


L. major


-infected BALB/c mice was determined as follows.




Assays were performed in 96-well plates coated with 200 ng antigen diluted to 50 μL in carbonate coating buffer, pH 9.6. The wells were coated overnight at 4° C. (or 2 hours at 37° C.). The plate contents were then removed and the wells were blocked for 2 hours with 200 μL of PBS/1% BSA. After the blocking step, the wells were washed five times with PBS/0.1% Tween 20™. 50 μL sera, diluted 1:100 in PBS/0.1% Tween 20™/0.1% BSA, was then added to each well and incubated for 30 minutes at room temperature. The plates were then washed again five times with PBS/0.1% Tween 20™.




The enyzme conjugate (horseradish peroxidase—Protein A, Zymed, San Francisco, Calif.) was then diluted 1:10,000 in PBS/0.1% Tween 20™/0.1% BSA, and 50 μL of the diluted conjugate was added to each well and incubated for 30 minutes at room temperature. Following incubation, the wells were washed five times with PBS/0.1% Tween 20™. 100 μL of tetramethylbenzidine peroxidase (TMB) substrate (Kirkegaard and Perry Laboratories, Gaithersburg, Md.) was added, undiluted, and incubated for about 15 minutes. The reaction was stopped with the addition of 100 μL of 1 N H


2


SO


4


to each well, and the plates were read at 450 nm.




As shown in

FIG. 26

, approximately 50% of the samples from human leishmaniasis patients showed reactivities with recombinant MAPS-1A substantially above background.

FIG. 27

shows the reactivity of MAPS-1A with increasing dilutions of sera from BALB/c mice previously administered either (i) saline solution; (ii) the adjuvant


B. pertussis


; (iii) soluble Leishmania antigens plus


B. pertussis


; (iv) live


L. major


promastigotes; or (v) soluble Leishmania antigens plus


B. pertussis


followed by live


L. major


promastigotes (as described below in Example 12). Considerably higher absorbances were seen with sera from mice infected with live


L. major


promastigotes and with mice infected with live


L. major


promastigotes following immunization with soluble Leishmania antigens plus


B. pertussis


, than with sera from the other three groups of mice, indicating that anti-MAPS-1A antibody titers increase following Leishmania infection.




Example 12




Use of Leishmania Antigens for Vaccination Against Leishmania Infection




This example illustrates the effectiveness of Leishmania antigens in conferring protection against disease in the experimental murine leishmaniasis model system. For a discussion of the murine leishmaniasis model system see, for example, Reiner et al.


Annu. Rev. Immunol


., 13:151-77, 1995.




The effectiveness of (i) crude soluble Leishmania antigens, (ii) MAPS-1A, and (iii) a mixture of Ldp23, LbeIF4A and M15, as vaccines against Leishmania infection was determined as follows. BALB/c mice (5 per group) were immunized intra-peritoneally three times at biweekly intervals with either (i) 30 μg crude soluble Leishmania antigens, (ii) 20 μg MAPS-1A or (iii) a mixture containing 10 μg each of LeIF, Ldp23 and M15, together with 100 μg of the adjuvant


C. parvum


. Two control groups were immunized with either saline or


C. parvum


alone. Two weeks after the last immunization, the mice were challenged with 2×10


5


late-log phase promastigotes of


L. major


. Infection was monitored weekly by measurement of footpad swelling. The amount of footpad swelling seen in mice immunized with either crude soluble Leishmania antigens, a mixture of Ldp23, LbeIF4A and M15 (FIG.


28


), or MAPS-1A (

FIG. 29

) was significantly less than that seen in mice immunized with


C. parvum


alone. These results demonstrate that the Leishmania antigens of the present invention are effective in conferring protection against Leishmania infection.




Example 13




Isolation of DNA Encoding for Soluble Antigens From an


L. major


Genomic DNA Library




This example illustrates the isolation of seven soluble Leishmania antigen genes from an


L. major


genomic DNA library.




An


L. major


genomic DNA expression library was prepared from


L. major


promastigotes using the unidirectional Lambda ZAP (uni-ZAP) kit (Stratagene) according to the manufacturer's protocol. This library was screened with a high titer rabbit sera raised against


L. major


soluble antigens, as described above in Example 9. Seven positive clones were identified. The phagemid were excised and DNA from each of the seven clones was sequenced using a Perkin Elmer/Applied Biosystems Division automated sequencer Model 373A. The DNA sequences for these antigens, referred to as LmgSP1, LmgSP3, LmgSP5, LmgSP8, LmgSP9, LmgSP13, LmgSP19, are provided in SEQ ID NO:29-35, respectively, with the corresponding amino acid sequences being provided in SEQ ID NO: 36-42, respectively. LmgSP13 was found to contain a 39 amino acid repeat sequence shown in SEQ ID NO:43.




Subsequent studies resulted in the isolation of a full-length sequence for LmgSP9. The full-length DNA sequence is provided in SEQ ID NO: 54, with the corresponding predicted amino acid sequence being provided in SEQ ID NO: 55. The amino acid sequence was found to contain six14 amino acid repeat units (SEQ ID NO: 56), with each unit being further divided into two 7 amino acid units, provided in SEQ ID NO: 57 and 58.




Comparison of the DNA and amino acid sequences for the isolated antigens as described above, revealed no significant homologies to LmgSP1, LmgSP3, and LmgSP13. LmgSP5 was found to be related to the known Promastigote surface antigen-2 (PSA2) family. LmgSP8 was found to bear some homology to a sequence previously identified in


E. coli


(2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase). LmgSP9 and LmgSP19 were found to be homologous to a


L. major


hydrophilic surface protein referred to as Gene B (Flinn, H. M. et al.


Mol. Biochem. Parasit


. 65:259-270, 1994), and to ubiquitin, respectively. To the best of the inventors' knowledge, none of these antigens have been previously shown to elicit T or B cell responses.




In further studies, a 220 bp DNA fragment was amplified from LmgSP5 and used to screen a


L. major


genomic library in Lambda ZAP. Seventeen positive clones were purified after secondary screening. To select for a clone that had a likelihood of having the 5′ sequence of the LmgSP5 insert, a labeled oligonucleotide from the 5′ region was used to screen the DNA from the secondary positive clones. DNA from three clones hybridized to the 5′ oligonucleotide, with one clone hybridizing stronger than the other two. This clone (cDNA sequence provided in SEQ ID NO: 103) was found to contain an insert of 2421 bp which contained the entire open reading frame for the novel PSA-2 gene. This ORF was amplified and cloned in the expression vector pET-17b for expression of recombinant protein in


E. coli


. The cDNA sequence of the ORF is provided in SEQ ID NO: 102, with the corresponding amino acid sequence being provided in SEQ ID NO: 104.




The reactivity of recombinant LmgSP9 with sera from patients with visceral leishmaniasis, (from both Sudan and Brazil) and from normal donors was evaluated by ELISA as described above. The absorbance values were compared with those obtained using the known Leishmania antigen K39 described above, with


L. chagasi


lysate being employed as a positive control. Representative results of these assays are provided below in Table 2, wherein all the patients from Brazil and those from the Sudan designated as “VL” were inflicted with visceral leishmaniasis. The results demonstrated that LmgSP9 specifically detects antibody in most individuals with visceral leishmaniasis, regardless of geographical location. In several cases, the absorbance values of the antibody reactivity to LmgSP9 were comparable to that observed with K39. In addition, LmgSP9 detected several cases of leishmaniasis that were not detected using K39. These results indicate that LmgSP9 can be used to complement the reactivity of K39.












TABLE 2











REACTIVITY OF LMGSP9 WITH






SERA FROM LEISHMANIA PATIENTS
















Patient No.






L. chagasi


lysate




K39




LmgSP9




















Sudanese samples:










B19




1.067




0.306




0.554







B25




1.884




3.435




0.974







B43




1.19




3.225




0.86







B47




2.405




2.892




0.375







B50




0.834




0.748




0.432







B58




0.921




0.235




0.92







B63




1.291




0.303




0.764







B70




0.317




0.089




3.056







VL4




1.384




3.035




2.965







VL11




0.382




0.144




0.142







VL12




0.277




0.068




0.098







VL13




0.284




0.12




0.194







Brazilian samples:







105




3.508




3.53




0.374







106




2.979




3.373




2.292







107




2.535




3.444




0.46







109




1.661




3.415




3.319







111




3.595




3.537




0.781







112




2.052




3.469




0.63







113




3.352




3.429




0.963







114




2.316




3.437




1.058







115




2.073




3.502




1.186







116




3.331




3.461




0.96







Normal Donors:







129




0.157




0.104




0.08







130




0.195




0.076




0.095







131




0.254




0.134




0.086







132




0.102




0.035




0.043















In order to obtain a higher specificity for the detection of antibodies in sera from visceral leishmaniasis patients, a homologue of LmgSP9 was isolated from


L. chagasi


, one of the causative agents of visceral leishmaniasis. A total of 80,000 pfu of an amplified


L. chagasi


genomic library were screened with the entire coding region of LmgSP9 (amplified from


L. major


genomic DNA). Seven hybridizing clones were purified to homogeneity. The determined DNA sequences for two of these clones, referred to as Lc Gene A and LcGene B, are provided in SEQ ID NO: 59 and 60, respectively, with the corresponding predicted amino acid sequences being provided in SEQ ID NO: 61 and 62, respectively. The open reading frame for Lc Gene A was found to show some homology to Gene A/C, previously isolated from


L. major


(McKlean et al.,


Mol. Bio. Parasitol


., 85:221-231, 1997). The open reading frame for Lc Gene B showed some homology to Gene B of


L. major


, discussed above, and was found to contain eleven repeats of a 14 amino acid repeat unit (SEQ ID NO: 63), with each repeat being further divided into two 7 amino acid units, provided in SEQ ID NO: 64 and 65.




The diagnostic potentials of Lc Gene A and Lc Gene B were evaluated by ELISA as described above using sera from visceral leishmaniasis patients from Sudan and Brazil, and from uninfected controls. Absorbance values were compared to those obtained using LmgSP9. Much higher absorbance values were obtained with Lc Gene A and Lc Gene B than with LmgSP9, with Lc Gene B appearing to be more effective that Lc Gene A in detecting antibodies in certain cases. These results indicate that Lc Gene B is highly effective in the diagnosis of visceral leishmaniasis.




In order to assess the diagnostic potential of the repeats found within Lc Gene B, a series of 6 peptides were synthesized (SEQ ID NO: 66-71; referred to as Pep 1-6), differing in an R or H residue. An ELISA was carried out using the full-length LcGene B protein and the six peptides. The absorbance values obtained with Pep 3 were higher than those obtained with the other 5 peptides, however they were not as high as those obtained with the full length protein.




Example 14




Isolation and Characterization of DNA Encoding for Soluble Antigens From an


L. chagasi


Genomic DNA Library




This example illustrates the preparation of five soluble Leishmania antigen genes from an


L. chagasi


genomic DNA library.




An


L. chagasi


genomic DNA expression library was prepared from


L. chagasi


promastigotes using the unidirectional Lambda ZAP (uni-ZAP) kit (Stratagene) according to the manufacturer's protocol. This library was screened with a high titer rabbit sera raised against


L. major


soluble antigens, as described above in Example 9. Five positive clones were identified. The phagemid were excised and DNA from each of the Five clones was sequenced using a Perkin Elmer/Applied Biosystems Division automated sequencer Model 373A. The DNA sequences for these antigens, referred to as LcgSP1, LcgSP3, LcgSP4, LcgSP8, and LcgSP10 are provided in SEQ ID NO:44-48, respectively, with the corresponding amino acid sequences being provided in SEQ ID NO:49-53, respectively.




Comparison of these sequences with known sequences in the gene bank as described above, revealed no known homologies to LcgSP3, LcgSP4, LcgSP8 and LcgSP10. LcgSP1 was found to be homologous to the known antigen HSP70.





FIGS. 30A and B

illustrate the proliferative response of murine lymph nodes to recombinant LcgSP8, LcgSP10 and LcgSP3. Lymph nodes were taken BALB/c mice 17 days after infection with


L. major


. Infection occurred by footpad injection of 2×10


6


parasites/footpad. The cells were stimulated with recombinant antigen and proliferation was measured at 72 hours using


3


H-thymidine.

FIG. 30A

shows the CPM, a direct measurement of mitotic activity in response to the antigens, and

FIG. 30B

shows the stimulation index, which measures the proliferative response relative to the negative control.




Example 15




Isolation of DNA Encoding for


L. major


Antigens by CD4+ T Cell Expression Cloning




This example illustrates the isolation of T cell antigens of


L. major


using a direct T cell screening approach.




Leishmania-specific CD4+ T cell lines were derived from the PBMC of an individual who tested positive in a leishmania skin test but had no clinical history of disease. These T cell lines were used to screen a


L. major


amastigote cDNA expression library prepared as described in Example 1. Immunoreactive clones were isolated and sequenced as described above. The determined cDNA sequences for the 8 isolated clones referred to as 1G6-34, 1E6-44, 4A5-63, 1B11-39, 2A10-37, 4G2-83, 4H6-41, 8G3-100 are provided in SEQ ID NO: 72-79, respectively, with the corresponding predicted amino acid sequences being provided in SEQ ID NO: 80-87, respectively. The cDNA sequences provided for 1E6-44, 2A10-37, 4G2-83, 4H6-41 and 8G3-100 are believe to represent partial clones. All of these clones were shown to stimulate T cell proliferation.




Comparison of these sequences with those in the gene bank as described above revealed no known homologies to the antigen 4A5-63. 1G6-34 was found to have some homology to histone H2B previously identified in


L. enrietti


. Antigens 1E6-44, 1B11-39 and 8G3-100 showed some homology to sequences previously identified in other eukaryotes, in particular


Saccharomyces cerevisae


. 2A10-37 and 4H6-41 were found to be homologous to the two previously identified proteins alpha tubulin from


L. donovani


and beta tubulin from


L. major


, respectively, and 4G2-83 was found to be homologous to elongation initiation factor 2 previously identified in


T. cruzi.






Subsequent full-length cloning studies, using standard techniques, led to the isolation of an extended cDNA sequence for 1E6-44, provided in SEQ ID NO: 105. The corresponding amino acid sequence is provided in SEQ ID NO: 106. An extended cDNA sequence for 2A10-37 is provided in SEQ ID NO: 107. This sequence was found to contain a complete open reading frame which encodes the amino acid sequence of SEQ ID NO: 108. An extended cDNA sequence for 4G2-83 is provided in SEQ ID NO: 109. This sequence contains a complete open reading frame which encodes the amino acid sequence of SEQ ID NO: 110. An extended cDNA sequence for 8G3-100 is provided in SEQ ID NO: 111, with the corresponding amino acid sequence being provided in SEQ ID NO: 112.




All eight of the antigens described above (1G6-34, 1E6-44, 4A5-63, 1B11-39, 2A10-37, 4G2-83, 4H6-41, 8G3-100) were expressed in


E. coli


as recombinant fusion proteins containing N-terminal histidine tags and were purified to homogeneity using nickel affinity chromatography. All 8 purified recombinant proteins elicited strong proliferative responses from the CD4+ T cell lines employed in the library screening. T cell reactivity to 1G6-34, 4H6-41 and 8G3-100 was also observed in T cells generated against both Leishmania promastigote culture filtrate and amastigote culture filtrate, indicating that these antigens are expressed in both the promastigote and amastigote life stages at levels that are sufficient to evoke strong cellular immunes response.




The ability of the 8 antigens to stimulate proliferation and IFN-γ production in PBMC from patients with active cutaneous leishmaniasis (CL) and from normal donors was examined as described above. In addition to the 8 antigens, leishmanial promastigote lysate (LPr) and purified protein derivative from


M. tuberculosis


(PPD) were also tested. The number of patients and/or donors responding to each antigen is shown in Table 3 below. All CL patients responded to at least one of the 8 antigens. Most notably, the antigens 1G6-34 and 4H6-41 elicited cell proliferation in 6/7 and 7/7 CL patients, respectively, and IFN-γ production in 6/7 and 5/7 CL patients, respectively. In addition 1G6-34 was not recognized by PBMC from uninfected control donors.












TABLE 3











CELL PROLIFERATION AND IFN-γ PRODUCTION






IN PBMC FROM PATIENTS WITH CUTANEOUS






LEISHMANIASIS














CL Patients




Normal donors
















IFN-γ




Cell




IFN-γ




Cell






Antigen




production




Proliferation




production




Proliferation









LPr




7/7




6/7




3/8




5/8






1G6-34




6/7




5/7




0/8




0/8






1E6-44




0/7




4/7




5/8




2/8






4A5-63




1/7




1/7




0/8




0/8






1B11-39




5/7




3/7




1/8




0/8






2A10-37




1/7




3/7




1/8




0/8






4H6-41




7/7




5/7




3/8




1/8






8G3-100




0/7




2/7




5/8




2/8






PPD




7/7




7/7




7/8




7/8














Example 16




Synthesis of Polypeptides




Polypeptides may be synthesized on a Perkin Elmer/Applied Biosystems Division 430A peptide synthesizer using FMOC chemistry with HPTU (O-Benzotriazole-N,N,N′,N′-tetramethyluronium hexafluorophosphate) activation. A Gly-Cys-Gly sequence may be attached to the amino terminus of the peptide to provide a method of conjugation, binding to an immobilized surface, or labeling of the peptide. Cleavage of the peptides from the solid support may be carried out using the following cleavage mixture: trifluoroacetic acid:ethanedithiol:thioanisole:water:phenol (40:1:2:2:3). After cleaving for 2 hours, the peptides may be precipitated in cold methyl-t-butyl-ether. The peptide pellets may then be dissolved in water containing 0.1% trifluoroacetic acid (TFA) and lyophilized prior to purification by C18 reverse phase HPLC. A gradient of 0%-60% acetonitrile (containing 0.1% TFA) in water (containing 0.1% TFA) may be used to elute the peptides. Following lyophilization of the pure fractions, the peptides may be characterized using electrospray or other types of mass spectrometry and by amino acid analysis.




Example 17




Use of Leishmania Antigens Plus Adjuvant for Vaccination Against Leishmania Infection




This example illustrates the effectiveness of recombinant Leishmania antigens, M15 and MAPS, plus an adjuvant, IL-12, in conferring protection against disease in the experimental murine leishmaniasis model system. For discussion of the murine leishmaniasis model system see, for example, Reiner et al.,


Annu. Rev. Immunol


., 13:151-77, 1995. The effectiveness of M15 and MAPS in combination with IL-12, as vaccine against Leishmania infection was determined as follows: BALB/c mice (5 per group) were immunized subcutaneously in the left footpad, twice (3 weeks apart) with the 10 μg of the individual antigens mixed with 1 μg of IL-12. As controls, three separate groups of mice were immunized with soluble leishmania lysate antigens (SLA) plus IL-12, with IL-12 alone or with PBS. Three weeks after the last immunization the mice were infected in the right footpad with 2×10


5


promastigote forms of


L. major


(stationary phase). Footpad swelling was then measured weekly. Results are expressed in FIG.


31


and clearly indicate that the mice immunized with either M15 or MAPS and IL-12 were greatly protected against the infection; whereas mice immunized with IL-12 alone did not show protection from infection. The protection induced by these antigens was as efficient or better than that induced by SLA+IL-12, a regimen known to induce good protection against leishmaniasis in this animal model (Afonso, L. C. C., T. M. Scharton, L. Q. Vieira, M. Wysocka, G. Trinchieri, and P. Scott. 1994. The adjuvant effect of interleukin-12 in a vaccine against


Leishmania major. Science


263:235-237). The same pattern of protection described above, was obtained i.e., M15, MAPS, and SLA, induced protection against


L. major


infection when


C. parvum


instead of IL-12 was used as adjuvant (Example 12). These results demonstrate that both M15 and MAPS recombinant antigens induce excellent protection against


L. major


infection in the BALB/c model of human leishmaniasis. In addition, both antigens induced protection when tested in two different adjuvant formulations, (e.g., IL-12 and


C. parvim


.) This finding is of high significance because it demonstrates that immunity to leishmaniasis can be induced by the specific antigens delivered in adjuvants that are suitable for human use.




Example 18




Use of Leishmania DNA for Vaccination Against Leishmania Infection




This example illustrates the effectiveness of Leishmania DNA in conferring protection against disease in the experimental murine leishmaniasis model system. For discussion of the murine leishmaniasis model system see, for example, Reiner et al.,


Annu. Rev. Immunol


., 13:151-77, 1995. The protection properties of the recombinant antigens was tested by immunizing mice with naked DNA containing the corresponding M15 and MAPS genes. The DNA construct used was the pcDNA3.1 vector (Invitrogen) containing a CMV promotor. BALB/c mice (5 per group) were injected in the left footpad three times (3 weeks apart) with 100 μg of the indicated naked DNA preparations. Mice were bled before and after the immunizations to monitor the development of specific immune response. The antibody response was evaluated by ELISA. Specific anti-M15 and anti-MAPS IgG2a antibodies were detected after the second immunization in the sera of the mice immunized with the respective naked DNA. The presence of specific antibodies indicates that the DNA immunization resulted in the production of specific protein antigen. Three weeks after the last immunization, the mice were then challenged in the right footpad with 2×10


5


promastigote forms of


L. major


(stationary phase). Footpad swelling was then measured weekly thereafter. Results are expressed in FIG.


32


and clearly indicated that, again, mice immunized with naked DNA containing either the M15 or MAPS genes were greatly protected against the infection with


L. major


. These results demonstrate that both M15 and MAPS genes induce excellent protection against


L. major


infection in the BALB/c model of human leishmaniasis.




Example 19




Preparation and Characterization of Leishmania Fusion Proteins




Fusion proteins comprising the Leishmania antigens MAPS-1A (SEQ ID NO: 24), M15 (SEQ ID NO: 2), Lbhsp83 (SEQ ID NO: 6) and LbeIF4A (SEQ ID NO: 10) were prepared as follows.




A fusion construct of MAPS-1A and M15 was prepared by first PCR amplifying the full-length coding sequence of MAPS-1A using the primers of SEQ ID NO: 88 and 89. The resulting products were digested with NdeI and BamHI follows by sub-cloning into the pET17b expression vector, also digested with NdeI and BamHI. The ligated products were transformed into


E. coli


and transformants containing the correct insert were identified by restriction digest and verified by DNA sequencing. The MAPS-1A-pET plasmid was digested with BamHI and EcoRI. The latter cuts within the poly-linker sequence of the pET vector which is located downstream of the BamHI site.




The primers of SEQ ID NO: 90 and 91 were employed to PCR amplify the full-length coding sequence of M15 and the resulting product was digested with BamHI and EcoRI followed by sub-cloning into the predigested MAPS1A-pET plasmid above. The ligated products were then transformed into


E. coli


and transformants with the correct insert were identified by restriction digest and verified by DNA sequencing. The MAPS1A-M15 pET construct was transformed into the bacterial host (BL21; pLysE). Expression of the protein resulted in a single recombinant molecule with a predicted molecular weight of 85.7 kDa. The recombinant MAPS1A-M15 fusion protein also contained 33 amino acid residues of run-through vector as a result of the removal of the stop codon of M15 and was subsequently digested with EcoRI. The DNA sequence of the MAPS1A-M15 construct is provided in SEQ ID NO: 101.




The primers of SEQ ID NO: 92 and 93 were used to PCR amplify the first 226 amino acid residues of LbeIF4A. The resulting PCR product was digested with EcoRI and sub-cloned into the MAPS1A-M15-pET plasmid. The ligated products were then transformed into


E. coli


and transformants with the correct insert and orientation were identified by restriction digest and verified by DNA sequencing. The expressed recombinant protein was purified by affinity chromatography over a Ni column. The DNA and amino acid sequences of the fusion protein MAPS1A-M15-LbeIF4A are provided in SEQ ID NO: 94 and 95, respectively.




Additional fusion proteins were prepared using the methodology described above. The amino acid sequences for the fusion proteins MAPS1A-M15-Lbhsp83 and MAPS1A-M15-Lbhsp83-LeIF4A are provided in SEQ ID NO: 96 and 97, respectively. The DNA sequence that encodes the amino acid sequence of SEQ ID NO: 97 is provided in SEQ ID NO: 98. The DNA sequences of MAPS1A-M15-Lbhsp83 and MAPS1A-M15-Lbhsp83-LeIF4A vectors employed in DNA vaccines are provided in SEQ ID NO: 99 and 100, respectively.




Example 20




Use of Leishmania Fusion Proteins Plus Adjuvant for Vaccination Against Leishmania Infection




The ability of the Leishmania fusion proteins MAPS1A-M15 (referred to as the diFusion) and MAPS1A-M15-LbeIF4A (referred to as the triFusion), plus adjuvant, to confer protection against disease in the experimental murine leishmaniasis model system was examined as follows.




The diFusion and triFusion were prepared as described above. In a first series of experiments, groups of BALB/c mice were immunized with either the individual recombinant antigens, (MAPS1A, M15 or LbeIF4A), the diFusion or the triFusion, with IL-12 as an adjuvant, as described above in Example 17. Control mice were immunized with IL-12 alone or saline. Before challenge, some mice (three per group) were sacrificed and the immune responses to the fusion proteins and to the individual antigens were investigated. Both T cell (cytokine production by spleen cells) and B cell responses (antibody response) were evaluated. The results indicated that immunization of mice with the fusion proteins did not interfere with the immunogenicity of the individual antigens. More specifically, Th1 responses (namely induction of IFN-γ production and specific IgG2a production) were observed to both MAPS1A and M15, when mice were immunized with both the diFusion and triFusion recombinant proteins. In addition, immunization with the triFusion resulted in good immune response to LeIF.




To evaluate the protection conferred by these fusion proteins, the immunized and control mice were infected in the right footpad with 2×10


3


amastigote forms of


L. major


and footpad swelling was measured weekly thereafter. The results, shown in

FIG. 33

, clearly indicated that both fusion proteins induced protection comparable to MAPS1A and M15.




A second series of experiments was performed in which MPL-SE (Ribi ImmunoChem Research Inc. (Hamilton, Mont.) was employed as the adjuvant. BALB/c mice were immunized three times (three weeks interval) with 2 μg of the individual antigens (MAPS1A, M15 or LbeIF4A), diFusion or triFusion proteins plus MPL-SE, and tested for immunogenicity of the antigens and for protection as described above. As with the experiments performed with IL-12 as adjuvant, the mice immunized with the individual antigens as well as with the fusion proteins showed both specific T and B cell responses to the immunizing antigens. Moreover, no antigen competition between the individual antigens was observed when the fusion proteins were used as immunogens.




As with the protection studies in which IL-12 was used as adjuvant, protection was achieved with the individual antigens MAS1A and M15, as well as with the two fusion proteins (FIG.


34


). Slightly better protection was observed in the group of mice immunized with the triFusion than in mice immunized with the diFusion.




From the foregoing, it will be appreciated that, although specific embodiments of the invention have been described herein for the purpose of illustration, various modifications may be made without deviating from the spirit and scope of the invention.







112




1


3134


DNA


Leishmania major




misc_feature




(1)...(3134)




n = A,T,C or G





1
caagtgtcga aggacagtgt tcnccgtgtg agatcgccgg ctgtgcgtgt gaaggcggtg 60
ccatcggana aacaacaccg gtgganccgc aggaaaccat ctttctccgc aggtctcttt 120
ttgttgtcga ttgagagtgc nccaaaccct gctggtgccc ttctcacata tcatgttttt 180
cgttgtgcgc tcgctttgcc tttcctctcc tttccctctc ttccgtggtg ccgtgtatac 240
ttctggcacc cgctacgtca cttcgctggt ttgaacagaa ccactgtgaa cacccacggg 300
cgatcgcaca catacacatc cctcactcac acacacagct acatctatcc tacataaagc 360
tgaaaaaaaa gtctacgaac aattttgttt ttacagtgcg ttgccgcaca tttctccgta 420
atggacgcaa ctgagctgaa gaacaagggg aacgaagagt tctccgccgg ccgctatgtg 480
gaggcggtga actacttctc aaaggcgatc cagttggatg agcagaacag tgtcctctac 540
agcaaccgct ccgcctgttt tgcagccatg cagaaataca aggacgcgct ggacgacgcc 600
gacaagtgca tctcgatcaa gccgaattgg gccaagggct acgtgcgccg aggagcagct 660
ctccatggca tgcgccgcta cgacgatgcc attgccgcgt atgaaaaggg gctcaaggtg 720
gacccttcca acagcggctg cgcgcagggc gtgaaggacg tgcaggtagc caaggcccgc 780
gaagcacgtg accccatcgc tcgcgtcttc accccggagg cgttccgcaa gatccaagag 840
aatcccaagc tgtctctact tatgctgcag ccggactacg tgaagatggt agacaccgtc 900
atccgcgacc cttcgcaggg ccggctgtac atggaagacc agcgctttgc cctgacgctc 960
atgtacctga gcggaatgaa gattcccaac gatggtgatg gcgaggagga ggaacgtccg 1020
tctgcgaagg cggcagagac agcgaagcca aaagaggaga agcctctcac cgacaacgag 1080
aaggaggccc tggcgctcaa ggaggagggc aacaagctgt acctctcgaa gaagtttgag 1140
gaggcgctga ccaagtacca agaggcgcag gtgaaagacc ccaacaacac tttatacatt 1200
ctgaacgtgt cggccgtgta cttcgagcag ggtgactacg acaagtgcat cgccgagtgc 1260
gagcacggta tcgagcacgg tcgcgagaac cactgcgact acacaatcat tgcgaagctc 1320
atgacccgga acgccttgtg cctccagagg cagaggaagt acgaggctgc tatcgacctt 1380
tacaagcgcg cccttgtcga gtggcgtaac cctgacaccc tcaagaagct gacggagtgc 1440
gagaaggagc accaaaaggc ggtggaggaa gcctacatcg atcctgagat cgcgaagcag 1500
aagaaagacg aaggtaacca gtacttcaag gaggataagt tccccgaggc cgtggcagcg 1560
tacacggagg ccatcaagcg caaccctgcc gagcacacct cctacagcaa tcgcgcggcc 1620
gcgtacatca agcttggagc cttcaacgac gccctcaagg acgcggagaa gtgcattgag 1680
ctgaagcccg actttgttaa gggctacgcg cgcaagggtc atgcttactt ttggaccaag 1740
cagtacaacc gcgcgctgca ggcgtacgat gagggcctca aggtggaccc gagcaatgcg 1800
gactgcaagg atgggcggta tcgcacaatc atgaagattc aggagatggc atctggccaa 1860
tccgcggatg gcgacgaggc ggcgcgccgg gccatggacg atcctgaaat cgcggcaatc 1920
atgcaagata gctacatgca actagtgttg aaggagatgc agaacgatcc cacgcgcatt 1980
caggagtaca tgaaggactc cgggatctca tcgaagatca acaagctgat ttcagctggc 2040
atcattcgtt ttggtcagta gacttctacg ctgcctcatc ttttccgtgt ctttgcgtcg 2100
gcgggtatcg taaagcacaa taaagcagcg attcacatgc acgagtaaag tgctgcgcct 2160
ctcaaacacg acgtcgaggc tgtggtgcag atgcgcgtcc tgcatgaagg tagtgaagag 2220
gaaagtaagg gatgttgttt gtgggccttc gtggctgcgc acacacctct tatctccttc 2280
gcttggtacc ttctcccttt ttcgtcttca cccccctttc tcttctcacg ctctccctgg 2340
cgcggtggtg caacgatttc gttttattta cgtctgtgta gctcctctat tcaacggtgc 2400
gatgacgcta acgaagctgg cctgtattcg gctaaggcga aggcaaaaga ctaggagggg 2460
ggggggaagg agacggcgtg accatcactg cgaagaaaca agccgaagaa aaggccccga 2520
acgcctgcat ttccgcgcgc cctcgcccgc cttccttcct tccttcgctc tctctctctc 2580
tctctctcgc tatcttctca acggagacat gaaaggcgtt tgttaggaaa agaggggggg 2640
gggaagagtg ggacgacgcg ctgcgtcttt tgggcactgg tcacgtgcgt caccctcttt 2700
ttttatctct attggcactg tcttgtttct tttccctttc ctatcatacg cgtctcgcaa 2760
acgactccgc gctgagcagc catgtgctgc ggcgtggagg aagtacacag acatcacgga 2820
tgcatatgtg cgcgtccgtg tacgcgcttg tatggggctt ctaacagcgc ctgtgtgtgt 2880
ttgtgtgtgt gtgtgtgtgt gtgtctgtgt atttcgagcg tctgtatgct attctattaa 2940
gcaccgaaga agagacacac acgacagcga aggagatggt gtcggctttt cggctaatca 3000
ctcccttcca tagcttctct gaaggaggct ctcttccaga ggaatagact gcagatgggg 3060
tccacgttta tctgaggagt caacggaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3120
aaaaaaaact cgag 3134




2


546


PRT


Leishmania major



2
Met Asp Ala Thr Glu Leu Lys Asn Lys Gly Asn Glu Glu Phe Ser Ala
1 5 10 15
Gly Arg Tyr Val Glu Ala Val Asn Tyr Phe Ser Lys Ala Ile Gln Leu
20 25 30
Asp Glu Gln Asn Ser Val Leu Tyr Ser Asn Arg Ser Ala Cys Phe Ala
35 40 45
Ala Met Gln Lys Tyr Lys Asp Ala Leu Asp Asp Ala Asp Lys Cys Ile
50 55 60
Ser Ile Lys Pro Asn Trp Ala Lys Gly Tyr Val Arg Arg Gly Ala Ala
65 70 75 80
Leu His Gly Met Arg Arg Tyr Asp Asp Ala Ile Ala Ala Tyr Glu Lys
85 90 95
Gly Leu Lys Val Asp Pro Ser Asn Ser Gly Cys Ala Gln Gly Val Lys
100 105 110
Asp Val Gln Val Ala Lys Ala Arg Glu Ala Arg Asp Pro Ile Ala Arg
115 120 125
Val Phe Thr Pro Glu Ala Phe Arg Lys Ile Gln Glu Asn Pro Lys Leu
130 135 140
Ser Leu Leu Met Leu Gln Pro Asp Tyr Val Lys Met Val Asp Thr Val
145 150 155 160
Ile Arg Asp Pro Ser Gln Gly Arg Leu Tyr Met Glu Asp Gln Arg Phe
165 170 175
Ala Leu Thr Leu Met Tyr Leu Ser Gly Met Lys Ile Pro Asn Asp Gly
180 185 190
Asp Gly Glu Glu Glu Glu Arg Pro Ser Ala Lys Ala Ala Glu Thr Ala
195 200 205
Lys Pro Lys Glu Glu Lys Pro Leu Thr Asp Asn Glu Lys Glu Ala Leu
210 215 220
Ala Leu Lys Glu Glu Gly Asn Lys Leu Tyr Leu Ser Lys Lys Phe Glu
225 230 235 240
Glu Ala Leu Thr Lys Tyr Gln Glu Ala Gln Val Lys Asp Pro Asn Asn
245 250 255
Thr Leu Tyr Ile Leu Asn Val Ser Ala Val Tyr Phe Glu Gln Gly Asp
260 265 270
Tyr Asp Lys Cys Ile Ala Glu Cys Glu His Gly Ile Glu His Gly Arg
275 280 285
Glu Asn His Cys Asp Tyr Thr Ile Ile Ala Lys Leu Met Thr Arg Asn
290 295 300
Ala Leu Cys Leu Gln Arg Gln Arg Lys Tyr Glu Ala Ala Ile Asp Leu
305 310 315 320
Tyr Lys Arg Ala Leu Val Glu Trp Arg Asn Pro Asp Thr Leu Lys Lys
325 330 335
Leu Thr Glu Cys Glu Lys Glu His Gln Lys Ala Val Glu Glu Ala Tyr
340 345 350
Ile Asp Pro Glu Ile Ala Lys Gln Lys Lys Asp Glu Gly Asn Gln Tyr
355 360 365
Phe Lys Glu Asp Lys Phe Pro Glu Ala Val Ala Ala Tyr Thr Glu Ala
370 375 380
Ile Lys Arg Asn Pro Ala Glu His Thr Ser Tyr Ser Asn Arg Ala Ala
385 390 395 400
Ala Tyr Ile Lys Leu Gly Ala Phe Asn Asp Ala Leu Lys Asp Ala Glu
405 410 415
Lys Cys Ile Glu Leu Lys Pro Asp Phe Val Lys Gly Tyr Ala Arg Lys
420 425 430
Gly His Ala Tyr Phe Trp Thr Lys Gln Tyr Asn Arg Ala Leu Gln Ala
435 440 445
Tyr Asp Glu Gly Leu Lys Val Asp Pro Ser Asn Ala Asp Cys Lys Asp
450 455 460
Gly Arg Tyr Arg Thr Ile Met Lys Ile Gln Glu Met Ala Ser Gly Gln
465 470 475 480
Ser Ala Asp Gly Asp Glu Ala Ala Arg Arg Ala Met Asp Asp Pro Glu
485 490 495
Ile Ala Ala Ile Met Gln Asp Ser Tyr Met Gln Leu Val Leu Lys Glu
500 505 510
Met Gln Asn Asp Pro Thr Arg Ile Gln Glu Tyr Met Lys Asp Ser Gly
515 520 525
Ile Ser Ser Lys Ile Asn Lys Leu Ile Ser Ala Gly Ile Ile Arg Phe
530 535 540
Gly Gln
545




3


676


DNA


Leishmania donovani



3
aattcggcac gaggcattgt gcataatggt caagtcccac tacatctgcg cgggccgcct 60
ggtgcgcatc ctgcgtggcc cccgccagga ccgcgttggt gtgatcgtcg acattgtcga 120
cgcgaaccgc gtgctggtgg agaacccgga ggacgcgaag atgtggcgcc acgtgcagaa 180
cctgaagaac gtggagccgc tgaagtactg cgtgagcgtc agccgcaact gcagcgcgaa 240
ggcgctgaag gatgcgctgg cctcgtcgaa ggcgctggag aagtacgcga agacgcgcac 300
tgctgcgcgc gtggaggcga agaaggcgtg cgccgcgtcg acggacttcg agcgctacca 360
gctgcgcgtt gcgcgccgtt ctcgcgcgca ctgggcgcgc aaggtgttcg acgagaagga 420
cgcgaagacg cccgtgtcgt ggcacaaggt tgcgctgaag aagatgcaga agaaggccgc 480
aaagatggac tcgaccgagg gcgctaagag gcgcatgcag aaggcgatcg ctgcccgcaa 540
ggcgaaaaag taaggccata ccctcacttc gcttgtttcg tgatttttcg tgggagtcgg 600
tggccctacc agcggtcttt cattggctta tttctatccg gtctgaaaga ggtacaaaaa 660
aaaaaaaaaa aaaaaa 676




4


175


PRT


Leishmania donovani



4
Met Val Lys Ser His Tyr Ile Cys Ala Gly Arg Leu Val Arg Ile Leu
1 5 10 15
Arg Gly Pro Arg Gln Asp Arg Val Gly Val Ile Val Asp Ile Val Asp
20 25 30
Ala Asn Arg Val Leu Val Glu Asn Pro Glu Asp Ala Lys Met Trp Arg
35 40 45
His Val Gln Asn Leu Lys Asn Val Glu Pro Leu Lys Tyr Cys Val Ser
50 55 60
Val Ser Arg Asn Cys Ser Ala Lys Ala Leu Lys Asp Ala Leu Ala Ser
65 70 75 80
Ser Lys Ala Leu Glu Lys Tyr Ala Lys Thr Arg Thr Ala Ala Arg Val
85 90 95
Glu Ala Lys Lys Ala Cys Ala Ala Ser Thr Asp Phe Glu Arg Tyr Gln
100 105 110
Leu Arg Val Ala Arg Arg Ser Arg Ala His Trp Ala Arg Lys Val Phe
115 120 125
Asp Glu Lys Asp Ala Lys Thr Pro Val Ser Trp His Lys Val Ala Leu
130 135 140
Lys Lys Met Gln Lys Lys Ala Ala Lys Met Asp Ser Thr Glu Gly Ala
145 150 155 160
Lys Arg Arg Met Gln Lys Ala Ile Ala Ala Arg Lys Ala Lys Lys
165 170 175




5


2040


DNA


Leishmania braziliensis



5
cgcggtggcg gccgctctag aactagtgga tcccccgggc tgcaggaatt cggcacgaga 60
gagcctgacg gacccggcgg tgctgggcga ggagactcac ctgcgcgtcc gcgtggtgcc 120
ggacaaggcg aacaagacgc tgacggtgga ggataacggc atcggcatga ccaaggcgga 180
cctcgtgaac aatctgggca cgatcgcgcg ctccggcacg aaggctttca tggaggcact 240
ggaggccggc ggcgacatga gcatgatcgg ccagttcggt gtcggcttct actccgcgta 300
ccttgtggcg gaccgcgtga cggtggtgtc gaagaacaac tcggacgagg cgtactggga 360
atcgtctgcg gggggcacgt tcaccatcac gagcgtgcag gagtcggaca tgaagcgcgg 420
cacgagtaca acgctgcacc taaaggagga ccagcaggag tacctggagg agcgccgggt 480
gaaggagctg atcaagaagc actccgagtt catcggctac gacatcgagc tgatggtgga 540
gaagacggcg gagaaggagg tgacggacga ggacgaggag gaggacgagt cgaagaagaa 600
gtcctgcggg gacgagggcg agccgaaggt ggaggaggtg acggagggcg gcgaggacaa 660
gaagaagaag acgaagaagg tgaaggaggt gaagaagacg tacgaggtca agaacaagca 720
caagccgctc tggacgcgcg acacgaagga cgtgacgaag gaggagtacg cggccttcta 780
caaggccatc tccaacgact gggaggacac ggcggcgacg aagcacttct cggtggaggg 840
ccagctggag ttccgcgcga tcgcgttcgt gccgaagcgc gcgccgttcg acatgttcga 900
gccgaacaag aagcgcaaca acatcaagct gtacgtgcgc cgcgtgttca tcatggacaa 960
ctgcgaggac ctgtgcccgg actggctcgg cttcgtgaag ggcgtcgtgg acagcgagga 1020
cctgccgctg aacatctcgc gcgagaacct gcagcagaac aagatcctga aggtgatccg 1080
caagaacatc gtgaagaagt gcctggagct gttcgaagag atagcggaga acaaggagga 1140
ctacaagcag ttctacgagc agttcggcaa gaacatcaag ctgggcatcc acgaggacac 1200
ggcgaaccgc aagaagctga tggagttgct gcgcttctac agcaccgagt cgggggagga 1260
gatgacgaca ctgaaggact acgtgacgcg catgaagccg gagcagaagt cgatctacta 1320
catcactggc gacagcaaga agaagctgga gtcgtcgccg ttcatcgaga aggcgagacg 1380
ctgcgggctc gaggtgctgt tcatgacgga gccgatcgac gagtacgtga tgcagcaggt 1440
gaaggacttc gaggacaaga agttcgcgtg cctgacgaag gaaggcgtgc acttcgagga 1500
gtccgaggag gagaagaagc agcgcgagga gaagaaggcg gcgtgcgaga agctgtgcaa 1560
gacgatgaag gaggtgctgg gcgacaaggt ggagaaggtg accgtgtcgg agcgcctgtt 1620
gacgtcgccg tgcatcctgg tgacgtcgga gtttgggtgg tcggcgcaca tggaacagat 1680
catgcgcaac caggcgctgc gcgactccag catggcgcag tacatggtgt ccaagaagac 1740
gatggaggtg aaccccgacc accccatcat caaggagctg cgccgccgcg tggaggcgga 1800
cgagaacgac aaggccgtga aggacctcgt cttcctgctc ttcgacacgt cgctgctcac 1860
gtccggcttc cagctggatg accccaccgg ctacgccgag cgcatcaacc gcatgatcaa 1920
gctcggcctg tcgctcgacg aggaggagga ggaggtcgcc gaggcgccgc cggccgaggc 1980
agcccccgcg gaggtcaccg ccggcacctc cagcatggag caggtggact gagccggtaa 2040




6


656


PRT


Leshmania brailiensis



6
Ser Leu Thr Asp Pro Ala Val Leu Gly Glu Glu Thr His Leu Arg Val
1 5 10 15
Arg Val Val Pro Asp Lys Ala Asn Lys Thr Leu Thr Val Glu Asp Asn
20 25 30
Gly Ile Gly Met Thr Lys Ala Asp Leu Val Asn Asn Leu Gly Thr Ile
35 40 45
Ala Arg Ser Gly Thr Lys Ala Phe Met Glu Ala Leu Glu Ala Gly Gly
50 55 60
Asp Met Ser Met Ile Gly Gln Phe Gly Val Gly Phe Tyr Ser Ala Tyr
65 70 75 80
Leu Val Ala Asp Arg Val Thr Val Val Ser Lys Asn Asn Ser Asp Glu
85 90 95
Ala Tyr Trp Glu Ser Ser Ala Gly Gly Thr Phe Thr Ile Thr Ser Val
100 105 110
Gln Glu Ser Asp Met Lys Arg Gly Thr Ser Thr Thr Leu His Leu Lys
115 120 125
Glu Asp Gln Gln Glu Tyr Leu Glu Glu Arg Arg Val Lys Glu Leu Ile
130 135 140
Lys Lys His Ser Glu Phe Ile Gly Tyr Asp Ile Glu Leu Met Val Glu
145 150 155 160
Lys Thr Ala Glu Lys Glu Val Thr Asp Glu Asp Glu Glu Glu Asp Glu
165 170 175
Ser Lys Lys Lys Ser Cys Gly Asp Glu Gly Glu Pro Lys Val Glu Glu
180 185 190
Val Thr Glu Gly Gly Glu Asp Lys Lys Lys Lys Thr Lys Lys Val Lys
195 200 205
Glu Val Lys Lys Thr Tyr Glu Val Lys Asn Lys His Lys Pro Leu Trp
210 215 220
Thr Arg Asp Thr Lys Asp Val Thr Lys Glu Glu Tyr Ala Ala Phe Tyr
225 230 235 240
Lys Ala Ile Ser Asn Asp Trp Glu Asp Thr Ala Ala Thr Lys His Phe
245 250 255
Ser Val Glu Gly Gln Leu Glu Phe Arg Ala Ile Ala Phe Val Pro Lys
260 265 270
Arg Ala Pro Phe Asp Met Phe Glu Pro Asn Lys Lys Arg Asn Asn Ile
275 280 285
Lys Leu Tyr Val Arg Arg Val Phe Ile Met Asp Asn Cys Glu Asp Leu
290 295 300
Cys Pro Asp Trp Leu Gly Phe Val Lys Gly Val Val Asp Ser Glu Asp
305 310 315 320
Leu Pro Leu Asn Ile Ser Arg Glu Asn Leu Gln Gln Asn Lys Ile Leu
325 330 335
Lys Val Ile Arg Lys Asn Ile Val Lys Lys Cys Leu Glu Leu Phe Glu
340 345 350
Glu Ile Ala Glu Asn Lys Glu Asp Tyr Lys Gln Phe Tyr Glu Gln Phe
355 360 365
Gly Lys Asn Ile Lys Leu Gly Ile His Glu Asp Thr Ala Asn Arg Lys
370 375 380
Lys Leu Met Glu Leu Leu Arg Phe Tyr Ser Thr Glu Ser Gly Glu Glu
385 390 395 400
Met Thr Thr Leu Lys Asp Tyr Val Thr Arg Met Lys Pro Glu Gln Lys
405 410 415
Ser Ile Tyr Tyr Ile Thr Gly Asp Ser Lys Lys Lys Leu Glu Ser Ser
420 425 430
Pro Phe Ile Glu Lys Ala Arg Arg Cys Gly Leu Glu Val Leu Phe Met
435 440 445
Thr Glu Pro Ile Asp Glu Tyr Val Met Gln Gln Val Lys Asp Phe Glu
450 455 460
Asp Lys Lys Phe Ala Cys Leu Thr Lys Glu Gly Val His Phe Glu Glu
465 470 475 480
Ser Glu Glu Glu Lys Lys Gln Arg Glu Glu Lys Lys Ala Ala Cys Glu
485 490 495
Lys Leu Cys Lys Thr Met Lys Glu Val Leu Gly Asp Lys Val Glu Lys
500 505 510
Val Thr Val Ser Glu Arg Leu Leu Thr Ser Pro Cys Ile Leu Val Thr
515 520 525
Ser Glu Phe Gly Trp Ser Ala His Met Glu Gln Ile Met Arg Asn Gln
530 535 540
Ala Leu Arg Asp Ser Ser Met Ala Gln Tyr Met Val Ser Lys Lys Thr
545 550 555 560
Met Glu Val Asn Pro Asp His Pro Ile Ile Lys Glu Leu Arg Arg Arg
565 570 575
Val Glu Ala Asp Glu Asn Asp Lys Ala Val Lys Asp Leu Val Phe Leu
580 585 590
Leu Phe Asp Thr Ser Leu Leu Thr Ser Gly Phe Gln Leu Asp Asp Pro
595 600 605
Thr Gly Tyr Ala Glu Arg Ile Asn Arg Met Ile Lys Leu Gly Leu Ser
610 615 620
Leu Asp Glu Glu Glu Glu Glu Val Ala Glu Ala Pro Pro Ala Glu Ala
625 630 635 640
Ala Pro Ala Glu Val Thr Ala Gly Thr Ser Ser Met Glu Gln Val Asp
645 650 655




7


1771


DNA


Leishmania tropica



7
caggcccgcg tccaggccct cgaggaggca gcgcgtctcc gcgcggagct ggaggcggcc 60
gaggaggcgg cccgcctgga tgtcatgcat gcggccgagc aggcccgtgt ccaggccctc 120
gaggaggcag cgcgtctccg cgcggagctg gaggaggccg aggaggcggc ccgcctggat 180
gtcatgcatg cggccgagca ggcccgcgtc caggccctcg aggaggcagc gcgtctccgc 240
gcggagctgg aggctgccga ggaggcggcg cgcctggagg ccatgcacga ggccgagcag 300
gcccgctccc aggccctcga ggaggcagcg cgtctccgcg cggagctgga ggaagccgag 360
gaggcggccc gcctggatgt catgcatgcg gccgagcagg cccgcgtcca ggccctcgag 420
gaggcagcgc gtctccgcgc ggagctggag gaggccgagg aggcggcccg cctggaggcc 480
atgcacgagg ccgagcaggc ccgctcccag gccctcgagg aggcagcgcg tctccgcgcg 540
gagctggagg cggccgagga ggcggcccgc ctggatgtca tgcacgaggc cgagcaggcc 600
cgtgtccagg ccctcgagga ggcggcgcgc ctggatgtca tgcacgaggc cgagcaggcc 660
cgcgtccagg ccctcgagga ggcagcgcgt ctccgcgcgg agctggaggc ggccgaggag 720
gcggcccgcc tggatgtcat gcacgaggcc gagcaggccc gcgtccaggc cctcgaggag 780
gcagcgcgtc tccgcgcgga gctggaggcg gccgaggagg cggcccgcct ggatgtcatg 840
cacgagggcg agcaggcccg tgtccaggcc ctcgaggagg cggcccgcct ggaggccatg 900
cacgaggccg agcaggcccg ctcccaggcc ctcgaggagg cagcgcgtct ctgcgcggag 960
ctggaggctg aggaggagga aaaagatgag cggccggcga cgtcgagcta cagcgaggag 1020
tgcaaagggc gactgctatc gagggcgcgg ccggatccgc ggaggccgct gccgcggccg 1080
ttcattggga tgtcactgtt ggaggatgtg gagaagagta ttctcattgt ggacgggctc 1140
tacagggatg ggccggcgta ccagacgggc atccgcctcg gggatgtcct cttgcgtatc 1200
gcgggggttt acgtggattc aatagcgaag gcgaggcagg tggtcgatgc gcgttgccgc 1260
tgcggctgcg tcgttcccgt gacgctggcg acgaagatga accagcagta cagcgtggct 1320
ctgtatatca tgacggtgga tccgcagcac aacgacaagc cctttttttt tgatgtgcac 1380
atccaccacc gcatcgagag ctcgcacatg gggaagaagg cgcagtggat ggaagttctt 1440
gagagcccat ccgtatcttc ggctgccacc acccctctcg tgccgctctt gcgtgagccg 1500
acgccgcgta ggggctcaga gctgcagtca agtgctcgtt ccgccttcgt tgccacgtct 1560
tacttctcga gcgcgcgcag gtcggtcagc tcagaaagtg agcgaccgcg cgggtcctct 1620
agcgtggcta tggcggagga ggcgatcgcg ctggcgccgc aagggtatac cccacccaac 1680
caagtgcgcg gccgtagttg acgtctctgt gtgagtgtgt gtcgctccgt ctccttcctt 1740
tttcgtcatg tgttttattc atttcttttt c 1771




8


566


PRT


Leishmania tropica



8
Gln Ala Arg Val Gln Ala Leu Glu Glu Ala Ala Arg Leu Arg Ala Glu
1 5 10 15
Leu Glu Ala Ala Glu Glu Ala Ala Arg Leu Asp Val Met His Ala Ala
20 25 30
Glu Gln Ala Arg Val Gln Ala Leu Glu Glu Ala Ala Arg Leu Arg Ala
35 40 45
Glu Leu Glu Glu Ala Glu Glu Ala Ala Arg Leu Asp Val Met His Ala
50 55 60
Ala Glu Gln Ala Arg Val Gln Ala Leu Glu Glu Ala Ala Arg Leu Arg
65 70 75 80
Ala Glu Leu Glu Ala Ala Glu Glu Ala Ala Arg Leu Glu Ala Met His
85 90 95
Glu Ala Glu Gln Ala Arg Ser Gln Ala Leu Glu Glu Ala Ala Arg Leu
100 105 110
Arg Ala Glu Leu Glu Glu Ala Glu Glu Ala Ala Arg Leu Asp Val Met
115 120 125
His Ala Ala Glu Gln Ala Arg Val Gln Ala Leu Glu Glu Ala Ala Arg
130 135 140
Leu Arg Ala Glu Leu Glu Glu Ala Glu Glu Ala Ala Arg Leu Glu Ala
145 150 155 160
Met His Glu Ala Glu Gln Ala Arg Ser Gln Ala Leu Glu Glu Ala Ala
165 170 175
Arg Leu Arg Ala Glu Leu Glu Ala Ala Glu Glu Ala Ala Arg Leu Asp
180 185 190
Val Met His Glu Ala Glu Gln Ala Arg Val Gln Ala Leu Glu Glu Ala
195 200 205
Ala Arg Leu Asp Val Met His Glu Ala Glu Gln Ala Arg Val Gln Ala
210 215 220
Leu Glu Glu Ala Ala Arg Leu Arg Ala Glu Leu Glu Ala Ala Glu Glu
225 230 235 240
Ala Ala Arg Leu Asp Val Met His Glu Ala Glu Gln Ala Arg Val Gln
245 250 255
Ala Leu Glu Glu Ala Ala Arg Leu Arg Ala Glu Leu Glu Ala Ala Glu
260 265 270
Glu Ala Ala Arg Leu Asp Val Met His Glu Gly Glu Gln Ala Arg Val
275 280 285
Gln Ala Leu Glu Glu Ala Ala Arg Leu Glu Ala Met His Glu Ala Glu
290 295 300
Gln Ala Arg Ser Gln Ala Leu Glu Glu Ala Ala Arg Leu Cys Ala Glu
305 310 315 320
Leu Glu Ala Glu Glu Glu Glu Lys Asp Glu Arg Pro Ala Thr Ser Ser
325 330 335
Tyr Ser Glu Glu Cys Lys Gly Arg Leu Leu Ser Arg Ala Arg Pro Asp
340 345 350
Pro Arg Arg Pro Leu Pro Arg Pro Phe Ile Gly Met Ser Leu Leu Glu
355 360 365
Asp Val Glu Lys Ser Ile Leu Ile Val Asp Gly Leu Tyr Arg Asp Gly
370 375 380
Pro Ala Tyr Gln Thr Gly Ile Arg Leu Gly Asp Val Leu Leu Arg Ile
385 390 395 400
Ala Gly Val Tyr Val Asp Ser Ile Ala Lys Ala Arg Gln Val Val Asp
405 410 415
Ala Arg Cys Arg Cys Gly Cys Val Val Pro Val Thr Leu Ala Thr Lys
420 425 430
Met Asn Gln Gln Tyr Ser Val Ala Leu Tyr Ile Met Thr Val Asp Pro
435 440 445
Gln His Asn Asp Lys Pro Phe Phe Phe Asp Val His Ile His His Arg
450 455 460
Ile Glu Ser Ser His Met Gly Lys Lys Ala Gln Trp Met Glu Val Leu
465 470 475 480
Glu Ser Pro Ser Val Ser Ser Ala Ala Thr Thr Pro Leu Val Pro Leu
485 490 495
Leu Arg Glu Pro Thr Pro Arg Arg Gly Ser Glu Leu Gln Ser Ser Ala
500 505 510
Arg Ser Ala Phe Val Ala Thr Ser Tyr Phe Ser Ser Ala Arg Arg Ser
515 520 525
Val Ser Ser Glu Ser Glu Arg Pro Arg Gly Ser Ser Ser Val Ala Met
530 535 540
Ala Glu Glu Ala Ile Ala Leu Ala Pro Gln Gly Tyr Thr Pro Pro Asn
545 550 555 560
Gln Val Arg Gly Arg Ser
565




9


1618


DNA


Leishmania braziliensis



9
ccactctctc ggtcgtctgt ctcccacgcg cgcacgcagt tgatttccgc cttcttaaac 60
gctctctttt tttttatttt tcacctgacc aaccgcacca cgtcggcctc catcatgtcg 120
cagcaagacc gagttgcccc acaggaccag gactcgttcc tcgacgacca gcccggcgtc 180
cgcccgatcc cgtccttcga tgacatgccg ttgcaccaga accttctgcg cggcatctac 240
tcgtacggct tcgagaaacc gtccagcatc cagcagcgcg ccatcgcccc cttcacgcgc 300
ggcggcgaca tcatcgcgca ggcgcagtcc ggtaccggca agacgggcgc cttctccatc 360
ggcctgctgc agcgcctgga cttccgccac aacctgatcc agggcctcgt gctctccccg 420
acccgcgagc tggccctgca gacggcggag gtgatcagcc gcatcggcga gttcctgtcg 480
aacagcgcga agttctgtga gacctttgtg ggtggcacgc gcgtgcagga tgacctgcgc 540
aagctgcagg ctggcgtcgt cgtcgccgtg gggacgccgg gccgcgtgtc cgacgtgatc 600
aagcgcggcg cgctgcgcac cgagtccctg cgcgtgctgg tgctcgacga ggctgatgag 660
atgctgtctc agggcttcgc ggatcagatt tacgagatct tccgcttcct gccgaaggac 720
atccaggtcg cgctcttctc cgccacgatg ccggaggagg tgctggagct gacaaagaag 780
ttcatgcgcg accccgtacg cattctcgtg aagcgcgaga gcctgacgct ggagggcatc 840
aagcagttct tcatcgccgt cgaggaggag cacaagctgg acacgctgat ggacctgtac 900
gagaccgtgt ccatcgcgca gtccgtcatc ttcgccaaca cccgccgcaa ggtggactgg 960
atcgccgaga agctgaatca gagcaaccac accgtcagca gcatgcacgc cgagatgccc 1020
aagagcgacc gcgagcgcgt catgaacacc ttccgcagcg gcagctcccg cgtgctcgta 1080
acgaccgacc tcgtggcccg cggcatcgac gtgcaccacg tgaacatcgt catcaacttc 1140
gacctgccga cgaacaagga gaactacctg caccgcattg gccgcggcgg ccgctacggc 1200
gtaaagggtg ttgccatcaa cttcgtgacg gagaaagacg tggagctgct gcacgagatc 1260
gaggggcact accacacgca gatcgatgag ctcccggtgg actttgccgc ctacctcggc 1320
gagtgagcgg gcccctgccc cccttccctg cccccctctc gcgacgagag aacgcacatc 1380
gtaacacagc cacgcgaacg atagtaaggg cgtgcggcgg cgttcccctc ctcctgccag 1440
cggcccccct ccgcagcgct tctcttttga gaggggggca gggggaggcg ctgcgcctgg 1500
ctggatgtgt gcttgagctt gcattccgtc aagcaagtgc tttgttttaa ttatgcgcgc 1560
cgttttgttg ctcgtccctt tcgttggtgt tttttcggcc gaaacggcgt ttaaagca 1618




10


403


PRT


Leishmania braziliensis



10
Met Ser Gln Gln Asp Arg Val Ala Pro Gln Asp Gln Asp Ser Phe Leu
1 5 10 15
Asp Asp Gln Pro Gly Val Arg Pro Ile Pro Ser Phe Asp Asp Met Pro
20 25 30
Leu His Gln Asn Leu Leu Arg Gly Ile Tyr Ser Tyr Gly Phe Glu Lys
35 40 45
Pro Ser Ser Ile Gln Gln Arg Ala Ile Ala Pro Phe Thr Arg Gly Gly
50 55 60
Asp Ile Ile Ala Gln Ala Gln Ser Gly Thr Gly Lys Thr Gly Ala Phe
65 70 75 80
Ser Ile Gly Leu Leu Gln Arg Leu Asp Phe Arg His Asn Leu Ile Gln
85 90 95
Gly Leu Val Leu Ser Pro Thr Arg Glu Leu Ala Leu Gln Thr Ala Glu
100 105 110
Val Ile Ser Arg Ile Gly Glu Phe Leu Ser Asn Ser Ala Lys Phe Cys
115 120 125
Glu Thr Phe Val Gly Gly Thr Arg Val Gln Asp Asp Leu Arg Lys Leu
130 135 140
Gln Ala Gly Val Val Val Ala Val Gly Thr Pro Gly Arg Val Ser Asp
145 150 155 160
Val Ile Lys Arg Gly Ala Leu Arg Thr Glu Ser Leu Arg Val Leu Val
165 170 175
Leu Asp Glu Ala Asp Glu Met Leu Ser Gln Gly Phe Ala Asp Gln Ile
180 185 190
Tyr Glu Ile Phe Arg Phe Leu Pro Lys Asp Ile Gln Val Ala Leu Phe
195 200 205
Ser Ala Thr Met Pro Glu Glu Val Leu Glu Leu Thr Lys Lys Phe Met
210 215 220
Arg Asp Pro Val Arg Ile Leu Val Lys Arg Glu Ser Leu Thr Leu Glu
225 230 235 240
Gly Ile Lys Gln Phe Phe Ile Ala Val Glu Glu Glu His Lys Leu Asp
245 250 255
Thr Leu Met Asp Leu Tyr Glu Thr Val Ser Ile Ala Gln Ser Val Ile
260 265 270
Phe Ala Asn Thr Arg Arg Lys Val Asp Trp Ile Ala Glu Lys Leu Asn
275 280 285
Gln Ser Asn His Thr Val Ser Ser Met His Ala Glu Met Pro Lys Ser
290 295 300
Asp Arg Glu Arg Val Met Asn Thr Phe Arg Ser Gly Ser Ser Arg Val
305 310 315 320
Leu Val Thr Thr Asp Leu Val Ala Arg Gly Ile Asp Val His His Val
325 330 335
Asn Ile Val Ile Asn Phe Asp Leu Pro Thr Asn Lys Glu Asn Tyr Leu
340 345 350
His Arg Ile Gly Arg Gly Gly Arg Tyr Gly Val Lys Gly Val Ala Ile
355 360 365
Asn Phe Val Thr Glu Lys Asp Val Glu Leu Leu His Glu Ile Glu Gly
370 375 380
His Tyr His Thr Gln Ile Asp Glu Leu Pro Val Asp Phe Ala Ala Tyr
385 390 395 400
Leu Gly Glu




11


12


PRT


Leishmania donovani




VARIANT




(1)...(5)




Xaa = any amino acid





11
Xaa Gln Xaa Pro Gln Xaa Val Phe Asp Glu Xaa Xaa
1 5 10




12


26


DNA


Artificial Sequence




Sense PCR pri mer





12
ggaattcccc ncagctngtn ttcgac 26




13


5


PRT


Leishmania donovani



13
Lys Val Phe Asp Glu
1 5




14


30


DNA


Artificial Sequence




PCR primer





14
ggatccatgg tcaagtccca ctacatctgc 30




15


33


DNA


Artificial Sequence




PCR primer





15
gaattcagac cggatagaaa taagccaatg aaa 33




16


701


PRT


Leishmania amozonensis



16
Met Thr Glu Thr Phe Ala Phe Gln Ala Glu Ile Asn Gln Leu Met Ser
1 5 10 15
Leu Ile Ile Asn Thr Phe Tyr Ser Asn Lys Glu Ile Phe Leu Arg Asp
20 25 30
Val Ile Ser Asn Ala Ser Asp Ala Cys Asp Lys Ile Arg Tyr Gln Ser
35 40 45
Leu Thr Asp Pro Ala Val Leu Gly Asp Ala Thr Arg Leu Cys Val Arg
50 55 60
Val Val Pro Asp Lys Glu Asn Lys Thr Leu Thr Val Glu Asp Asn Gly
65 70 75 80
Ile Gly Met Thr Lys Ala Asp Leu Val Asn Asn Leu Gly Thr Ile Ala
85 90 95
Arg Ser Gly Thr Lys Ala Phe Met Glu Ala Leu Glu Ala Gly Ala Asp
100 105 110
Met Ser Met Ile Gly Gln Phe Gly Val Gly Phe Tyr Ser Ala Tyr Leu
115 120 125
Val Ala Asp Arg Val Thr Val Thr Ser Lys Asn Asn Ser Asp Glu Val
130 135 140
Tyr Val Trp Glu Ser Ser Ala Gly Gly Thr Phe Thr Ile Thr Ser Ala
145 150 155 160
Pro Glu Ser Asp Met Lys Leu Pro Ala Arg Ile Thr Leu His Leu Lys
165 170 175
Glu Asp Gln Leu Glu Tyr Leu Glu Ala Arg Arg Leu Lys Glu Leu Ile
180 185 190
Lys Lys His Ser Glu Phe Ile Gly Tyr Asp Ile Glu Leu Met Val Glu
195 200 205
Lys Thr Thr Glu Lys Glu Val Thr Asp Glu Asp Glu Glu Glu Ala Lys
210 215 220
Lys Ala Asp Glu Asp Gly Glu Glu Pro Lys Val Glu Glu Val Thr Glu
225 230 235 240
Gly Glu Glu Asp Lys Lys Lys Lys Thr Lys Lys Val Lys Glu Val Thr
245 250 255
Lys Glu Tyr Glu Val Gln Asn Lys His Lys Pro Leu Trp Thr Arg Asp
260 265 270
Pro Lys Asp Val Thr Lys Glu Glu Tyr Ala Ala Phe Tyr Lys Ala Ile
275 280 285
Ser Asn Asp Trp Glu Asp Pro Pro Ala Thr Lys His Phe Ser Val Glu
290 295 300
Gly Gln Leu Glu Phe Arg Ala Ile Met Phe Val Pro Lys Arg Ala Pro
305 310 315 320
Phe Asp Met Leu Glu Pro Asn Lys Lys Arg Asn Asn Ile Lys Leu Tyr
325 330 335
Val Arg Arg Val Phe Ile Met Asp Asn Cys Glu Asp Leu Cys Pro Asp
340 345 350
Trp Leu Gly Phe Val Lys Gly Val Val Asp Ser Glu Asp Leu Pro Leu
355 360 365
Asn Ile Ser Arg Glu Asn Leu Gln Gln Asn Lys Ile Leu Lys Val Ile
370 375 380
Arg Lys Asn Ile Val Lys Lys Cys Leu Glu Met Phe Glu Glu Val Ala
385 390 395 400
Glu Asn Lys Glu Asp Tyr Lys Gln Phe Tyr Glu Gln Phe Gly Lys Asn
405 410 415
Ile Lys Leu Gly Ile His Glu Asp Thr Ala Asn Arg Lys Lys Leu Met
420 425 430
Glu Leu Leu Arg Phe Tyr Ser Thr Glu Ser Gly Glu Val Met Thr Thr
435 440 445
Leu Lys Asp Tyr Val Thr Arg Met Lys Ala Glu Gln Asn Ser Ile Tyr
450 455 460
Tyr Ile Thr Gly Asp Ser Lys Lys Lys Leu Glu Ser Ser Pro Phe Ile
465 470 475 480
Glu Gln Ala Lys Arg Arg Gly Phe Glu Val Leu Phe Met Thr Glu Pro
485 490 495
Tyr Asp Glu Tyr Val Met Gln Gln Val Lys Asp Phe Glu Asp Lys Lys
500 505 510
Phe Ala Cys Leu Thr Lys Glu Gly Val His Phe Glu Glu Ser Glu Glu
515 520 525
Glu Lys Lys Gln Arg Glu Glu Glu Lys Ala Thr Cys Glu Lys Leu Cys
530 535 540
Lys Thr Met Lys Glu Val Leu Gly Asp Lys Val Glu Lys Val Thr Val
545 550 555 560
Ser Glu Arg Leu Ser Thr Ser Pro Cys Ile Leu Val Thr Ser Glu Phe
565 570 575
Gly Trp Ser Ala His Met Glu Gln Met Met Arg Asn Gln Ala Leu Arg
580 585 590
Asp Ser Ser Met Ala Gln Tyr Met Met Ser Lys Lys Thr Met Glu Leu
595 600 605
Asn Pro Lys His Pro Ile Ile Lys Glu Leu Arg Arg Arg Val Glu Ala
610 615 620
Asp Glu Asn Asp Lys Ala Val Lys Asp Leu Val Phe Leu Leu Phe Asp
625 630 635 640
Thr Ser Leu Leu Thr Ser Gly Phe Gln Leu Glu Asp Pro Thr Tyr Ala
645 650 655
Glu Arg Ile Asn Arg Met Ile Lys Leu Gly Leu Ser Leu Asp Glu Glu
660 665 670
Glu Glu Glu Glu Ala Val Glu Ala Ala Val Ala Glu Thr Ala Pro Ala
675 680 685
Glu Val Thr Ala Gly Thr Ser Ser Met Glu Leu Val Asp
690 695 700




17


704


PRT


T. Cruzi



17
Met Thr Glu Thr Phe Ala Phe Gln Ala Glu Ile Asn Gln Leu Met Ser
1 5 10 15
Leu Ile Ile Asn Thr Phe Tyr Ser Asn Lys Glu Ile Phe Leu Arg Glu
20 25 30
Leu Ile Ser Asn Ala Ser Asp Ala Cys Asp Lys Ile Arg Tyr Gln Ser
35 40 45
Leu Thr Asn Gln Ala Val Leu Gly Asp Glu Ser His Leu Arg Ile Arg
50 55 60
Val Val Pro Asp Lys Ala Asn Lys Thr Leu Thr Val Glu Asp Thr Gly
65 70 75 80
Ile Gly Met Thr Lys Ala Glu Leu Val Asn Asn Leu Gly Thr Ile Ala
85 90 95
Arg Ser Gly Thr Lys Ala Phe Met Glu Ala Leu Glu Ala Gly Gly Asp
100 105 110
Met Ser Met Ile Gly Gln Phe Gly Val Gly Phe Tyr Ser Ala Tyr Leu
115 120 125
Val Ala Asp Arg Val Thr Val Val Ser Lys Asn Asn Asp Asp Glu Ala
130 135 140
Tyr Thr Trp Glu Ser Ser Ala Gly Gly Thr Phe Thr Val Thr Pro Thr
145 150 155 160
Pro Asp Cys Asp Leu Lys Arg Gly Thr Arg Ile Val Leu His Leu Lys
165 170 175
Glu Asp Gln Gln Glu Tyr Leu Glu Glu Arg Arg Leu Lys Asp Leu Ile
180 185 190
Lys Lys His Ser Glu Phe Ile Gly Tyr Asp Ile Glu Leu Met Val Glu
195 200 205
Lys Ala Thr Glu Lys Glu Val Thr Asp Glu Asp Glu Asp Glu Ala Ala
210 215 220
Ala Thr Lys Asn Glu Glu Gly Glu Glu Pro Lys Val Glu Glu Val Lys
225 230 235 240
Asp Asp Ala Glu Glu Gly Glu Lys Lys Lys Lys Thr Lys Lys Val Lys
245 250 255
Glu Val Thr Gln Glu Phe Val Val Gln Asn Lys His Lys Pro Leu Trp
260 265 270
Thr Arg Asp Pro Lys Asp Val Thr Lys Glu Glu Tyr Ala Ala Phe Tyr
275 280 285
Lys Ala Ile Ser Asn Asp Trp Glu Glu Pro Leu Ser Thr Lys His Phe
290 295 300
Ser Val Glu Gly Gln Leu Glu Phe Arg Ala Ile Leu Phe Val Pro Lys
305 310 315 320
Arg Ala Pro Phe Asp Met Phe Glu Pro Ser Lys Lys Arg Asn Asn Ile
325 330 335
Lys Leu Tyr Val Arg Arg Val Phe Ile Met Asp Asn Cys Glu Asp Leu
340 345 350
Cys Pro Glu Trp Leu Ala Phe Val Arg Gly Val Val Asp Ser Glu Asp
355 360 365
Leu Pro Leu Asn Ile Ser Arg Glu Asn Leu Gln Gln Asn Lys Ile Leu
370 375 380
Lys Val Ile Arg Lys Asn Ile Val Lys Lys Ala Leu Glu Leu Phe Glu
385 390 395 400
Glu Ile Ala Glu Asn Lys Glu Asp Tyr Lys Lys Phe Tyr Glu Gln Phe
405 410 415
Gly Lys Asn Val Lys Leu Gly Ile His Glu Asp Ser Ala Asn Arg Lys
420 425 430
Lys Leu Met Glu Leu Leu Arg Phe His Ser Ser Glu Ser Gly Glu Asp
435 440 445
Met Thr Thr Leu Lys Asp Tyr Val Thr Arg Met Lys Glu Gly Gln Lys
450 455 460
Cys Ile Tyr Tyr Val Thr Gly Asp Ser Lys Lys Lys Leu Glu Thr Ser
465 470 475 480
Pro Phe Ile Glu Gln Ala Arg Arg Arg Gly Phe Glu Val Leu Phe Met
485 490 495
Thr Glu Pro Ile Asp Glu Tyr Val Met Gln Gln Val Lys Asp Phe Glu
500 505 510
Asp Lys Lys Phe Ala Cys Leu Thr Lys Glu Gly Val His Phe Glu Glu
515 520 525
Thr Glu Glu Glu Lys Lys Gln Arg Glu Glu Glu Lys Thr Ala Tyr Glu
530 535 540
Arg Leu Cys Lys Ala Met Lys Asp Val Leu Gly Asp Lys Val Glu Lys
545 550 555 560
Val Val Val Ser Glu Arg Leu Ala Thr Ser Pro Cys Ile Leu Val Thr
565 570 575
Ser Glu Phe Gly Trp Ser Ala His Met Glu Gln Ile Met Arg Asn Gln
580 585 590
Ala Leu Arg Asp Ser Ser Met Ser Ala Tyr Met Met Ser Lys Lys Thr
595 600 605
Met Glu Ile Asn Pro Ala His Pro Ile Val Lys Glu Leu Lys Arg Arg
610 615 620
Val Glu Ala Asp Glu Asn Asp Lys Ala Val Lys Asp Leu Val Tyr Leu
625 630 635 640
Leu Phe Asp Thr Ala Leu Leu Thr Ser Gly Phe Thr Leu Asp Asp Pro
645 650 655
Thr Ser Tyr Ala Glu Arg Ile His Arg Met Ile Lys Leu Gly Leu Ser
660 665 670
Leu Asp Asp Glu Asp Asn Gly Asn Glu Glu Ala Glu Pro Ala Ala Ala
675 680 685
Val Pro Ala Glu Pro Val Ala Gly Thr Ser Ser Met Glu Gln Val Asp
690 695 700




18


732


PRT


Homo sapien



18
Met Pro Glu Glu Thr Gln Thr Gln Asp Gln Pro Met Glu Glu Glu Glu
1 5 10 15
Val Glu Thr Phe Ala Phe Gln Ala Glu Ile Ala Gln Leu Met Ser Leu
20 25 30
Ile Ile Asn Thr Phe Tyr Ser Asn Lys Glu Ile Phe Leu Arg Glu Leu
35 40 45
Ile Ser Asn Ser Ser Asp Ala Leu Asp Lys Ile Arg Tyr Glu Ser Leu
50 55 60
Thr Asp Pro Ser Lys Leu Asp Ser Gly Lys Glu Leu His Ile Asn Leu
65 70 75 80
Ile Pro Asn Lys Gln Asp Arg Ala Leu Thr Ile Val Asp Thr Gly Ile
85 90 95
Gly Met Thr Lys Ala Asp Leu Ile Asn Asn Leu Gly Thr Ile Ala Lys
100 105 110
Ser Gly Thr Lys Ala Phe Met Glu Ala Leu Gln Ala Gly Ala Asp Ile
115 120 125
Ser Met Ile Gly Gln Phe Gly Val Gly Phe Tyr Ser Ala Tyr Leu Val
130 135 140
Ala Glu Lys Val Thr Val Ile Thr Lys His Asn Asp Asp Glu Gln Tyr
145 150 155 160
Ala Trp Glu Ser Ser Ala Gly Gly Ser Phe Thr Val Arg Thr Asp Thr
165 170 175
Gly Glu Pro Met Gly Arg Gly Thr Lys Val Ile Leu His Leu Lys Glu
180 185 190
Asp Gln Thr Glu Tyr Leu Glu Glu Arg Arg Ile Lys Glu Ile Val Lys
195 200 205
Lys His Ser Gln Phe Ile Gly Tyr Pro Ile Thr Leu Phe Val Glu Lys
210 215 220
Glu Arg Asp Lys Glu Val Ser Asp Asp Glu Ala Glu Glu Lys Glu Asp
225 230 235 240
Lys Glu Glu Glu Lys Glu Lys Glu Glu Lys Glu Ser Glu Asp Lys Pro
245 250 255
Glu Ile Glu Asp Val Gly Ser Asp Glu Glu Asp Glu Lys Lys Asp Gly
260 265 270
Asp Lys Lys Lys Lys Lys Lys Ile Lys Glu Lys Tyr Ile Asp Lys Glu
275 280 285
Glu Leu Asn Lys Thr Lys Pro Ile Trp Thr Arg Asn Pro Asp Asp Ile
290 295 300
Thr Asn Glu Glu Tyr Gly Glu Phe Tyr Lys Ser Leu Thr Asn Asp Trp
305 310 315 320
Glu Asp His Leu Ala Val Lys His Phe Ser Val Glu Gly Gln Leu Glu
325 330 335
Phe Arg Ala Leu Leu Phe Val Pro Arg Arg Ala Pro Phe Asp Leu Phe
340 345 350
Glu Asn Arg Lys Lys Lys Asn Asn Ile Lys Leu Tyr Val Arg Arg Val
355 360 365
Phe Ile Met Asp Asn Cys Glu Glu Leu Ile Pro Glu Tyr Leu Asn Phe
370 375 380
Ile Arg Gly Val Val Asp Ser Glu Asp Leu Pro Leu Asn Ile Ser Arg
385 390 395 400
Glu Met Leu Gln Gln Ser Lys Ile Leu Lys Val Ile Arg Lys Asn Leu
405 410 415
Val Lys Lys Cys Leu Glu Leu Phe Thr Glu Leu Ala Glu Asp Lys Glu
420 425 430
Asn Tyr Lys Lys Phe Tyr Glu Gln Phe Ser Lys Asn Ile Lys Leu Gly
435 440 445
Ile His Glu Asp Ser Gln Asn Arg Lys Lys Leu Ser Glu Leu Leu Arg
450 455 460
Tyr Tyr Thr Ser Ala Ser Gly Asp Glu Met Val Ser Leu Lys Asp Tyr
465 470 475 480
Cys Thr Arg Met Lys Glu Asn Gln Lys His Ile Tyr Tyr Ile Thr Gly
485 490 495
Glu Thr Lys Asp Gln Val Ala Asn Ser Ala Phe Val Glu Arg Leu Arg
500 505 510
Lys His Gly Leu Glu Val Ile Tyr Met Ile Glu Pro Ile Asp Glu Tyr
515 520 525
Cys Val Gln Gln Leu Lys Glu Phe Glu Gly Lys Thr Leu Val Ser Val
530 535 540
Thr Lys Glu Gly Leu Glu Leu Pro Glu Asp Glu Glu Glu Lys Lys Lys
545 550 555 560
Gln Glu Glu Lys Lys Thr Lys Phe Glu Asn Leu Cys Lys Ile Met Lys
565 570 575
Asp Ile Leu Glu Lys Lys Val Glu Lys Val Val Val Ser Asn Arg Leu
580 585 590
Val Thr Ser Pro Cys Cys Leu Val Thr Ser Thr Tyr Gly Trp Thr Ala
595 600 605
Asn Met Glu Arg Ile Met Lys Ala Gln Ala Leu Arg Asp Asn Ser Thr
610 615 620
Met Gly Tyr Met Ala Ala Lys Lys His Leu Glu Ile Asn Pro Asp His
625 630 635 640
Ser Ile Ile Glu Thr Leu Arg Gln Lys Ala Glu Ala Asp Lys Asn Asp
645 650 655
Lys Ser Val Lys Asp Leu Val Ile Leu Leu Tyr Glu Thr Ala Leu Leu
660 665 670
Ser Ser Gly Phe Ser Leu Glu Asp Pro Gln Thr His Ala Asn Arg Ile
675 680 685
Tyr Arg Met Ile Lys Leu Gly Leu Gly Ile Asp Glu Asp Asp Pro Thr
690 695 700
Ala Asp Asp Thr Ser Ala Ala Val Thr Glu Glu Met Pro Pro Leu Glu
705 710 715 720
Gly Asp Asp Asp Thr Ser Arg Met Glu Glu Val Asp
725 730




19


1019


DNA


Leishmania major



19
gaattcggca cgaggtttct gtactttatt gcttccagcc tttattcact cttcgatttc 60
ctctaacacc atgtcctccg agcgcacctt tattgccgtc aagccggacg gcgtgcagcg 120
cggcctcgtt ggcgagatca tcgcccgctt cgagcgcaag ggctacaagc tcgtcgcctt 180
gaagatactg cagccgacga cggagcaggc ccagggtcac tataaggacc tttgctccaa 240
gccgtttttc ccggcccttg tgaagtactt ctcctctggc ccgatcgtgt gtatggtgtg 300
ggagggtaag aacgtggtga agagcggccg cgtgctgctc ggcgcgacga acccggccga 360
ctcacagccc ggcacgatcc gtggcgactt tgccgtggat gtgggccgca acgtgtgcca 420
cgggtccgac tctgtggaga gcgcggagcg cgagatcgcc ttttggttca aggcggatga 480
gatcgcgagc tggacgtcgc actccgtgtc ccagatctat gagtaacggt gattgcggac 540
acgctttgag gacgtagctg tacccccaat gaattcttct ctgaaaacca catcataagc 600
ctcttaagag gttatttttc ttgatcgatg cccggtggtg accagcacca ttcctttatc 660
ggattcactc acactcctag cgaatcatgt agtgcggtga gagtgggctc tggaggagac 720
tgttgtgtag ccatggcttc aggagagaaa acaaaataca aggaaaggca atatgtaact 780
atggggttcc cttttttact atgcaaagtt tttataactc ctgatcggca aaaacaacaa 840
caaccgccat acaccaagag caaatgcttt cttctgcgga ctgtgcttct gttttttttt 900
atgaaggagt gactcgcgcg atgaaaagtg tgtgcgtggg agatgtattt cctttttttg 960
ttcatagtgg cgacagctca ctgttgacga tgacaaaaaa aaaaaaaaaa aaactcgag 1019




20


151


PRT


Leishmania major



20
Met Ser Ser Glu Arg Thr Phe Ile Ala Val Lys Pro Asp Gly Val Gln
1 5 10 15
Arg Gly Leu Val Gly Glu Ile Ile Ala Arg Phe Glu Arg Lys Gly Tyr
20 25 30
Lys Leu Val Ala Leu Lys Ile Leu Gln Pro Thr Thr Glu Gln Ala Gln
35 40 45
Gly His Tyr Lys Asp Leu Cys Ser Lys Pro Phe Phe Pro Ala Leu Val
50 55 60
Lys Tyr Phe Ser Ser Gly Pro Ile Val Cys Met Val Trp Glu Gly Lys
65 70 75 80
Asn Val Val Lys Ser Gly Arg Val Leu Leu Gly Ala Thr Asn Pro Ala
85 90 95
Asp Ser Gln Pro Gly Thr Ile Arg Gly Asp Phe Ala Val Asp Val Gly
100 105 110
Arg Asn Val Cys His Gly Ser Asp Ser Val Glu Ser Ala Glu Arg Glu
115 120 125
Ile Ala Phe Trp Phe Lys Ala Asp Glu Ile Ala Ser Trp Thr Ser His
130 135 140
Ser Val Ser Gln Ile Tyr Glu
145 150




21


1523


DNA


Leishmania major



21
gaattcggca cgagtgctgc ccgacatgac atgctcgctg accggacttc agtgcacaga 60
cccgaactgc aagacctgca caacttacgg tcagtgcaca gactgcaacg acggctacgg 120
tctcacctcc tccagcgttt gcgtgcgctg cagtgtagcg ggctgcaaga gctgccccgt 180
cgacgctaac gtctgcaaag tgtgtctcgg cggcagcgag ccgatcaaca atatgtgccc 240
ctgcaccgac cccaactgcg ccagctgccc cagcgacgct ggcacgtgca ctcagtgcgc 300
gaacggctac ggtctcgtgg acggcgcctg tgtgagatgc caggagccca actgcttcag 360
ctgcgacagc gacgcgaata agtgcacaca atgtgcgccg aactactacc tcaccccgct 420
cttgacctgc tccccggtgg cctgcaacat cgagcactgc atgcagtgcg acccacagac 480
gccgtcgcgc tgccaggagt gcgtgtcccc ctacgtggtt gacagctacg acggcctctg 540
caggctctcc gatgcctgct ccgtgcccaa ctgcaagaag tgcgagaccg gtacctccag 600
gctctgcgcc gagtgcgaca ccggctacag tctctccgcc gacgcgacga gctgcagcag 660
tccaaccacg cagccgtgcg aggtggagca ctgcaacaca tgtgtgaacg gcgatagcac 720
ccgctgtgcc tactgcaaca ccggctacta cgtctccgat ggcaagtgca aggccatgca 780
gggctgctac gtgtcgaact gcgcgcagtg catgctgctt gacagcacca agtgctccac 840
gtgcgtgaaa gggtacctgc tcacgtcgtc ctacagttgc gtctcgcaga aagtcatcaa 900
cagtgcggcc gcgccctact ctctgtgggt ggccgccgcc gtgctcctca cctcttttgc 960
catgcaccta gcatagtgcg cagcggcatg cgaacaaccc cactctcatt ctccaacatg 1020
tgcatacaca cacacacaga cagcggggca gcaccccctc cccacacaca cacacgcact 1080
tcccccttgt cttgttcttc tttcctcgtt cgcatttctt tctctcgtgc gctggcgccg 1140
gcctcctgca cgtcgctccc ctccccctaa cctctattct ctctctctct ctctctcgcc 1200
ggcatcattg cttcttaccc ttttctgatc cttgctcgcg tgggcggaca ctgccacagt 1260
cccacagcgc agacacacgt gtttaaacgg cgcaggcatc cctccctatc acttcatttc 1320
tcctaaagcc actcaccaag tcgcacaccg ccctccccca tcggccgccc ttccgggcgc 1380
agctgtgcgg aatgggtgtg tgctcgacct cgttcctggc agctcactcg catgtgtaca 1440
gccactccaa ccacgaaagc tctcttctgc gcacataaaa aaaaaaaaaa aaaaaaaact 1500
cgaggggggg cccggtaccc aaa 1523




22


320


PRT


Leishmania major



22
Val Leu Pro Asp Met Thr Cys Ser Leu Thr Gly Leu Gln Cys Thr Asp
1 5 10 15
Pro Asn Cys Lys Thr Cys Thr Thr Tyr Gly Gln Cys Thr Asp Cys Asn
20 25 30
Asp Gly Tyr Gly Leu Thr Ser Ser Ser Val Cys Val Arg Cys Ser Val
35 40 45
Ala Gly Cys Lys Ser Cys Pro Val Asp Ala Asn Val Cys Lys Val Cys
50 55 60
Leu Gly Gly Ser Glu Pro Ile Asn Asn Met Cys Pro Cys Thr Asp Pro
65 70 75 80
Asn Cys Ala Ser Cys Pro Ser Asp Ala Gly Thr Cys Thr Gln Cys Ala
85 90 95
Asn Gly Tyr Gly Leu Val Asp Gly Ala Cys Val Arg Cys Gln Glu Pro
100 105 110
Asn Cys Phe Ser Cys Asp Ser Asp Ala Asn Lys Cys Thr Gln Cys Ala
115 120 125
Pro Asn Tyr Tyr Leu Thr Pro Leu Leu Thr Cys Ser Pro Val Ala Cys
130 135 140
Asn Ile Glu His Cys Met Gln Cys Asp Pro Gln Thr Pro Ser Arg Cys
145 150 155 160
Gln Glu Cys Val Ser Pro Tyr Val Val Asp Ser Tyr Asp Gly Leu Cys
165 170 175
Arg Leu Ser Asp Ala Cys Ser Val Pro Asn Cys Lys Lys Cys Glu Thr
180 185 190
Gly Thr Ser Arg Leu Cys Ala Glu Cys Asp Thr Gly Tyr Ser Leu Ser
195 200 205
Ala Asp Ala Thr Ser Cys Ser Ser Pro Thr Thr Gln Pro Cys Glu Val
210 215 220
Glu His Cys Asn Thr Cys Val Asn Gly Asp Ser Thr Arg Cys Ala Tyr
225 230 235 240
Cys Asn Thr Gly Tyr Tyr Val Ser Asp Gly Lys Cys Lys Ala Met Gln
245 250 255
Gly Cys Tyr Val Ser Asn Cys Ala Gln Cys Met Leu Leu Asp Ser Thr
260 265 270
Lys Cys Ser Thr Cys Val Lys Gly Tyr Leu Leu Thr Ser Ser Tyr Ser
275 280 285
Cys Val Ser Gln Lys Val Ile Asn Ser Ala Ala Ala Pro Tyr Ser Leu
290 295 300
Trp Val Ala Ala Ala Val Leu Leu Thr Ser Phe Ala Met His Leu Ala
305 310 315 320




23


797


DNA


Leishmania major



23
ctgtacttta ttgccaccag ccagccatgt cctgcggtaa cgccaagatc aactctcccg 60
cgccgtcctt cgaggaggtg gcgctcatgc ccaacggcag cttcaagaag atcagcctct 120
cctcctacaa gggcaagtgg gtcgtgctct tcttctaccc gctcgacttt agcttcgtgt 180
gcccgacaga ggtcatcgcg ttctccgaca gcgtgagtcg cttcaacgag ctcaactgcg 240
aggtcctcgc gtgctcgata gacagcgagt acgcgcacct gcagtggacg ctgcaggacc 300
gcaagaaggg cggcctcggg accatggcga tcccaatgct agccgacaag accaagagca 360
tcgctcgttc ctacggcgtg ctggaggaga gccagggcgt ggcctaccgc ggtctcttca 420
tcatcgaccc ccatggcatg ctgcgtcaga tcaccgtcaa tgacatgccg gtgggccgca 480
gcgtggagga ggttctacgc ctgctggagg cttttcagtt cgtggagaag cacggcgagg 540
tgtgccccgc gaactggaag aagggcgccc ccacgatgaa gccggaaccg aatgcgtctg 600
tcgagggata cttcagcaag cagtaaacct gtgagcgtcg caggagtcag tgtgacctca 660
cccgcctctg ccagtgggtg cgagagggcg tgagggattg tgggaaggct gttggatatg 720
atgcagacag cgatgaatgc aactcccaca cactggccct cctcagccct ctccacacag 780
acacacgcac gcatgtg 797




24


199


PRT


Leishmania major



24
Met Ser Cys Gly Asn Ala Lys Ile Asn Ser Pro Ala Pro Ser Phe Glu
1 5 10 15
Glu Val Ala Leu Met Pro Asn Gly Ser Phe Lys Lys Ile Ser Leu Ser
20 25 30
Ser Tyr Lys Gly Lys Trp Val Val Leu Phe Phe Tyr Pro Leu Asp Phe
35 40 45
Ser Phe Val Cys Pro Thr Glu Val Ile Ala Phe Ser Asp Ser Val Ser
50 55 60
Arg Phe Asn Glu Leu Asn Cys Glu Val Leu Ala Cys Ser Ile Asp Ser
65 70 75 80
Glu Tyr Ala His Leu Gln Trp Thr Leu Gln Asp Arg Lys Lys Gly Gly
85 90 95
Leu Gly Thr Met Ala Ile Pro Met Leu Ala Asp Lys Thr Lys Ser Ile
100 105 110
Ala Arg Ser Tyr Gly Val Leu Glu Glu Ser Gln Gly Val Ala Tyr Arg
115 120 125
Gly Leu Phe Ile Ile Asp Pro His Gly Met Leu Arg Gln Ile Thr Val
130 135 140
Asn Asp Met Pro Val Gly Arg Ser Val Glu Glu Val Leu Arg Leu Leu
145 150 155 160
Glu Ala Phe Gln Phe Val Glu Lys His Gly Glu Val Cys Pro Ala Asn
165 170 175
Trp Lys Lys Gly Ala Pro Thr Met Lys Pro Glu Pro Asn Ala Ser Val
180 185 190
Glu Gly Tyr Phe Ser Lys Gln
195




25


637


DNA


Leishmania tropica



25
ttacatatgc atcaccacca ccaccacatg tcctgcggta acgccaagat caactctccc 60
gcgccgccct tcgaggagat ggcgctcatg cccaacggca gcttcaagaa gatcagcctc 120
tccgcctaca agggcaagtg ggtcgtgctc ttcttctacc cgctcgactt caccttcgtg 180
tgcccgacag agatcatcgc gttctccgac aacgtgagtc gcttcaacga gctcaactgc 240
gaggtcctcg cgtgctcgat ggacagcgag tacgcgcacc tgcagtggac gctgcaggac 300
cgcaagaagg gcggcctcgg ggccatggcg atcccaatgc tggccgacaa gactaagagc 360
atcgctcgtt cctacggcgt gctggaggag agccagggcg tggcctaccg cggtctcttc 420
atcatcgacc cccgtggcat ggtgcgtcag atcaccgtca acgacatgcc ggtgggccgc 480
aacgtggagg aggctctgcg cctgctggag gctttgcagt tcgtggagaa gcacggcgag 540
gtgtgccccg cgaactggaa gaagggcgcc cccacgatga agccggaacc gaaggcgtct 600
gtcgagggat acttcagcaa gcagtaagaa ttccatg 637




26


206


PRT


Leishmania tropica



26
Met His His His His His His Met Ser Cys Gly Asn Ala Lys Ile Asn
1 5 10 15
Ser Pro Ala Pro Pro Phe Glu Glu Met Ala Leu Met Pro Asn Gly Ser
20 25 30
Phe Lys Lys Ile Ser Leu Ser Ala Tyr Lys Gly Lys Trp Val Val Leu
35 40 45
Phe Phe Tyr Pro Leu Asp Phe Thr Phe Val Cys Pro Thr Glu Ile Ile
50 55 60
Ala Phe Ser Asp Asn Val Ser Arg Phe Asn Glu Leu Asn Cys Glu Val
65 70 75 80
Leu Ala Cys Ser Met Asp Ser Glu Tyr Ala His Leu Gln Trp Thr Leu
85 90 95
Gln Asp Arg Lys Lys Gly Gly Leu Gly Ala Met Ala Ile Pro Met Leu
100 105 110
Ala Asp Lys Thr Lys Ser Ile Ala Arg Ser Tyr Gly Val Leu Glu Glu
115 120 125
Ser Gln Gly Val Ala Tyr Arg Gly Leu Phe Ile Ile Asp Pro Arg Gly
130 135 140
Met Val Arg Gln Ile Thr Val Asn Asp Met Pro Val Gly Arg Asn Val
145 150 155 160
Glu Glu Ala Leu Arg Leu Leu Glu Ala Leu Gln Phe Val Glu Lys His
165 170 175
Gly Glu Val Cys Pro Ala Asn Trp Lys Lys Gly Ala Pro Thr Met Lys
180 185 190
Pro Glu Pro Lys Ala Ser Val Glu Gly Tyr Phe Ser Lys Gln
195 200 205




27


51


DNA


Artificial Sequence




PCR primer





27
caattacata tgcatcacca tcaccatcac atgtcctgcg gtaacgccaa g 51




28


31


DNA


Artificial Sequence




PCR primer





28
catggaattc ttactgcttg ctgaagtatc c 31




29


520


DNA


Leishmania major




misc_feature




(1)...(520)




n = A, T, C or G





29
ggcacgagcc cttgcctaca tttgctcgcc gatattcgcg gggagttctt caatttgcgt 60
cgcgtagaac tgctcaatgt cgcgcaacaa gcgcagctcg tcgtggcgca cgaaggtgat 120
ggccagtcca gtgcggccca tgcggccagt gcggccgatg cggtgaatgt actgctcacg 180
cgcgagcggc aaatcgtagc tgaggacgag cgagacgcgc tccacatcaa tgccacgcgc 240
ccacaggtcc gttgtaatga ncacgcggct gtgtccatta cggaatgccg cataatctcg 300
tcgcgctccg cctggggcat gtcgccgtgc atggcggaca cagcgaaatt ctcgcgcgtc 360
atcttcttgg caagctgctc cacctttttg cgggtgttgc anaaaaccac ngcgtgggcg 420
atcgttaagc tgtcgtacaa actccatcaa gaaatcgaat ttgtttttct cttcgtcnac 480
nganacaaan tactgtttaa cgctntccac ggtgatctca 520




30


600


DNA


Leishmania major




misc_feature




(1)...(600)




n = A, T, C or G





30
ggcacaaggt tttcgggtta tcttcacgca tggtggagcg cagatgggtg aagtaaatac 60
gcggaccgaa ctgcttgatc atatcaacca gatcgttgtc agcacgcacg ccgtangaac 120
cggtgcacat ggtaaaaccg tntgccatgc tgtttacggt atcaaccatc cactgcatat 180
cttcaatggt ggaaacaatg cgcggcaggc cgaggatccg gcgcggctca tcatnnagnt 240
natnaaccan tcgcacgtct anttctgcac taaactacaa ntatcggtna catatnataa 300
ggccnatttt cggtccagga ntatgtnctn tcaaaatgcc ncgttannca ctcttaaatg 360
tctcangngn aaantngttc taaagggtgt ccaaaanntn nttaccnttc cccncttact 420
tcaananctc ctcnaattcc cnggcccttn gacnannatt tnctattaaa anatanaann 480
ttcaaattna ttcccnacct nccntnncca aanntancna ataatcannc ccctntcann 540
anntcccanc ttaccctccn ntngnngggn nnnccnattn ccccaanccc ncnctaaata 600




31


600


DNA


Leishmania major




misc_feature




(1)...(600)




n = A, T, C or G





31
ggcacgagcc tcagtggagc tcaatgaaga tattgcagta tcttactctg gatggcactc 60
aggtctccgg cacgctgccg ccccagtgga gcgcgatggc atcggtgcga attcttaacc 120
tgnagggtac tgaggtctct ggtacgctgc cgcctgagtg gatatcnatg ancaggctgc 180
aaactctgaa tctgcggcgc acgaaantat ccggcactct gccgcccgaa tgganttcta 240
tgaacagcct ggagtacttt cacctttatc ttactcaggt ctccggcacg ctgccgcccg 300
agtggagtgg gatgtcnaag gccgcatact tctggctgga atactgcgac ctgtccggca 360
ntctgccgcc cnagtggtcg tcnatgccaa agctgcgcgg tatctcactg ancggcaaca 420
aattcttgcg ngtgtntncc ngactcntgg gattcagaaa ggtggtcctt gttgttgggc 480
atcnaaggan caaaccccaa ngggcccncn aattgcttgg gcntgcttaa gganttgcac 540
naaccaacnc cnccaaaaac cccccccacc ncnaaannac nancccccac ttaanncccn 600




32


600


DNA


Leishmania major




misc_feature




(1)...(600)




n = A,T,C or G





32
ngcacgagaa gcgcaactgg cgcatcgcat ctgtgactat ctgcctgaac aggggcaatn 60
gtttgttggt aacagcctgg tggtacgtct gattgatncg cttncgcaan ttccggcagg 120
ttacccggtg tacancaacc gtggggccan cggtatcnac nggctgcttt cgaccgccgc 180
cggngttcan cgggcaancg gcaaaccgac gctggcgatt gtgggcgatc tctccgcact 240
ttacgatctc aacgcnctgg cgttattgcg tcaggtttct gcgccgctgg tattaattgt 300
ggtgaacaac aacggcnggg caaaattttc tcgctgttgc caacgccccc aaagcnagcg 360
tgaagcgttt ctatctgatg ccgcaaaacg tccattttga aacacgccgc cncccatgtt 420
tcganctgaa aatatcatcg tccgcaaaac tggcangaaa cttngaaaac cgcattttgc 480
cgacnccctg gcncacgccc aacccaccca ccggttgatt gaaaatggtg ggttaacgaa 540
nccnnatggg tgccccaaan cncnnccanc caaatttctg ggcccaggtt aaancccttt 600




33


600


DNA


Leishmania major




misc_feature




(1)...(600)




n = A,T,C or G





33
acgatgacca tgccccgaag gaggatggcc atgcgccgaa gaacgatgac catgccccga 60
aggaggatgg ccatgcgccg aagaacgatg accatgcccc gaaggaggat ggccatgcgc 120
cgaagaacga cggggatgtg cagaanaaga gcgaagatgg agacaacgtg ggagagggag 180
gcaagggcaa tgaggatggt aacgatgatc agccgaagga gcacgctgcc ggcaactagt 240
gggctgcgtc cgggcttgtg tgcganccgt gctctgcacc ccgccgctcg tgcatcctcg 300
catgtggact gcgtgtgtct ctcccgcttt gtctctctcc cccacacagt ggctgatgcc 360
tgcacggggt tgctgtggct gcacctcctg accactgcca gctttcttgg cttgcctccc 420
ctctgcgcct ccgctcgtgc cgctcgtgcc gaattcgata tcaagcttat cgataccgtc 480
nacctcgaag gggggcccgg ttacccattc gccctatant gagtcntatt acaattcctg 540
gcgtcgtttt acacgtcgtg actgggaaaa accctggcgt tccccactta tcgccttgca 600




34


516


DNA


Leishmania major



34
agctgcagca gcgcctagac accgccacgc agcagcgcgc cgagctggag gcacgggtgg 60
cacggctggc cgcggaccgc gacgaggcgc gccagcagct ggccgcgaac gccgaggagc 120
tgcagcagcg cctagacacc gccacgcagc agcgcgccga gctggaggca cgggtggcac 180
ggctggccgc ggacggcgac gaggcccgcc agcagctggc cgcgaacgcc gaggagctgc 240
agcagcgcct agacaccgcc acgcagcagc gcgccgagct ggaggcacag gtggcacggc 300
tggccgcgaa cgccgaggag ctgcagcagc gcctagacac cgccacgcag cagcgcgccg 360
agctggaggc acgggtggca cggctggccg cggaccgcga cgaggcgcgc cagcagctgg 420
ccgcgaacgc cgaggagctg cagcagcgcc tagacaccgc cacgcagcag cgcgccgagc 480
tggargcaca ggtggcacgg ctggccgcga amgccg 516




35


822


DNA


Leishmania major




misc_feature




(1)...(822)




n = A,T,C or G





35
ggcacganag atcttcgtga agacgctgac cggcaanacg atcgcgctgg aggtggagcc 60
gagcgacacg atcgagaacg tgaaggccaa gatccaggac aaggagggca tcccgccgga 120
ccagcagcgc ctgatcttcg ccggcaagca gctggaggan ggccgcacgc tctcggacta 180
caacatccag aaggagtcca cgctgcacct ggtgctgcgc ctgcgcggcg gcatgcanat 240
cttcgtgaaa acgctnaccg gcaanacaat cgcgctggaa gtggagccga acgaccnatc 300
gaaaacgtga aggccnanat ccangacaag gaaggcntcc cgccgganca gcacgcctga 360
tcttccnccg gcaaccactt gangaagggc ncacgctctc ngactacnac atccanaaag 420
gattccnccc tgcaccttgt tgcttgcncc ttgctcgggg ggcatgccna atcttccttn 480
aaaacctcaa ccggcaanaa caatcccccn cngaagttgg aacccaacca ncccattcna 540
aaactttaaa ggccnnnatt ccngaacaan gaagggcttc ccccccggac cnncaancnc 600
cctgattntt cccccggnnn ncantttgga angaagggcc ccnccctccn ccgaattncn 660
acntcccnaa anggattccc cccctnccct tgntttttgc gccnnnnnnc ggcnncntnc 720
cnaaattccg nccnaaggnc cccantanan cnactttccc nttccccccc nnnnttttgc 780
ntaaantttt tncccccnna aanntcccnt ttncnanttn an 822




36


146


PRT


Leishmania major




VARIANT




(1)...(146)




Xaa = Any Amino Acid





36
Gly Thr Ser Pro Cys Leu His Leu Leu Ala Asp Ile Arg Gly Glu Phe
1 5 10 15
Phe Asn Leu Arg Arg Val Glu Leu Leu Asn Val Ala Gln Gln Ala Gln
20 25 30
Leu Val Val Ala His Glu Gly Asp Gly Gln Ser Ser Ala Ala His Ala
35 40 45
Ala Ser Ala Ala Asp Ala Val Asn Val Leu Leu Thr Arg Glu Arg Gln
50 55 60
Ile Val Ala Glu Asp Glu Arg Asp Ala Leu His Ile Asn Ala Thr Arg
65 70 75 80
Pro Gln Val Arg Cys Asn Xaa His Ala Ala Val Ser Ile Thr Glu Cys
85 90 95
Arg Ile Ile Ser Ser Arg Ser Ala Trp Gly Met Ser Pro Cys Met Ala
100 105 110
Asp Thr Ala Lys Phe Ser Arg Val Ile Phe Leu Ala Ser Cys Ser Thr
115 120 125
Phe Leu Arg Val Leu Xaa Lys Thr Thr Ala Trp Ala Ile Val Lys Leu
130 135 140
Ser Tyr
145




37


77


PRT


Leishmania major




VARIANT




(1)...(77)




Xaa = Any Amino Acid





37
Ala Gln Gly Phe Arg Val Ile Phe Thr His Gly Gly Ala Gln Met Gly
1 5 10 15
Glu Val Asn Thr Arg Thr Glu Leu Leu Asp His Ile Asn Gln Ile Val
20 25 30
Val Ser Thr His Ala Val Xaa Thr Gly Ala His Gly Lys Thr Val Cys
35 40 45
His Ala Val Tyr Gly Ile Asn His Pro Leu His Ile Phe Asn Gly Gly
50 55 60
Asn Asn Ala Arg Gln Ala Glu Asp Pro Ala Arg Leu Ile
65 70 75




38


68


PRT


Leishmania major




VARIANT




(1)...(68)




Xaa = Any Amino Acid





38
His Glu Pro Gln Trp Ser Ser Met Lys Ile Leu Gln Tyr Leu Thr Leu
1 5 10 15
Asp Gly Thr Gln Val Ser Gly Thr Leu Pro Pro Gln Trp Ser Ala Met
20 25 30
Ala Ser Val Arg Ile Leu Asn Leu Xaa Gly Thr Glu Val Ser Gly Thr
35 40 45
Leu Pro Pro Glu Trp Ile Ser Met Xaa Arg Leu Gln Thr Leu Asn Leu
50 55 60
Arg Arg Thr Lys
65




39


65


PRT


Leishmania major




VARIANT




(1)...(65)




Xaa = Any Amino Acid





39
Ala Arg Glu Ala Gln Leu Ala His Arg Ile Cys Asp Tyr Leu Pro Glu
1 5 10 15
Gln Gly Gln Xaa Phe Val Gly Asn Ser Leu Val Val Arg Leu Ile Asp
20 25 30
Xaa Leu Xaa Gln Xaa Pro Ala Gly Tyr Pro Val Tyr Xaa Asn Arg Gly
35 40 45
Ala Xaa Gly Ile Xaa Xaa Leu Leu Ser Thr Ala Ala Gly Val Xaa Arg
50 55 60
Ala
65




40


78


PRT


Leishmania major




VARIANT




(1)...(78)




Xaa = Any Amino Acid





40
Asp Asp His Ala Pro Lys Glu Asp Gly His Ala Pro Lys Asn Asp Asp
1 5 10 15
His Ala Pro Lys Glu Asp Gly His Ala Pro Lys Asn Asp Asp His Ala
20 25 30
Pro Lys Glu Asp Gly His Ala Pro Lys Asn Asp Gly Asp Val Gln Xaa
35 40 45
Lys Ser Glu Asp Gly Asp Asn Val Gly Glu Gly Gly Lys Gly Asn Glu
50 55 60
Asp Gly Asn Asp Asp Gln Pro Lys Glu His Ala Ala Gly Asn
65 70 75




41


169


PRT


Leishmania major



41
Leu Gln Gln Arg Leu Asp Thr Ala Thr Gln Gln Arg Ala Glu Leu Glu
1 5 10 15
Ala Arg Val Ala Arg Leu Ala Ala Asp Arg Asp Glu Ala Arg Gln Gln
20 25 30
Leu Ala Ala Asn Ala Glu Glu Leu Gln Gln Arg Leu Asp Thr Ala Thr
35 40 45
Gln Gln Arg Ala Glu Leu Glu Ala Arg Val Ala Arg Leu Ala Ala Asp
50 55 60
Gly Asp Glu Ala Arg Gln Gln Leu Ala Ala Asn Ala Glu Glu Leu Gln
65 70 75 80
Gln Arg Leu Asp Thr Ala Thr Gln Gln Arg Ala Glu Leu Glu Ala Gln
85 90 95
Val Ala Arg Leu Ala Ala Asn Ala Glu Glu Leu Gln Gln Arg Leu Asp
100 105 110
Thr Ala Thr Gln Gln Arg Ala Glu Leu Glu Ala Arg Val Ala Arg Leu
115 120 125
Ala Ala Asp Arg Asp Glu Ala Arg Gln Gln Leu Ala Ala Asn Ala Glu
130 135 140
Glu Leu Gln Gln Arg Leu Asp Thr Ala Thr Gln Gln Arg Ala Glu Leu
145 150 155 160
Glu Ala Gln Val Ala Arg Leu Ala Ala
165




42


98


PRT


Leishmania major




VARIANT




(1)...(98)




Xaa = Any Amino Acid





42
Ala Arg Xaa Ile Phe Val Lys Thr Leu Thr Gly Xaa Thr Ile Ala Leu
1 5 10 15
Glu Val Glu Pro Ser Asp Thr Ile Glu Asn Val Lys Ala Lys Ile Gln
20 25 30
Asp Lys Glu Gly Ile Pro Pro Asp Gln Gln Arg Leu Ile Phe Ala Gly
35 40 45
Lys Gln Leu Glu Xaa Gly Arg Thr Leu Ser Asp Tyr Asn Ile Gln Lys
50 55 60
Glu Ser Thr Leu His Leu Val Leu Arg Leu Arg Gly Gly Met Xaa Ile
65 70 75 80
Phe Val Lys Thr Leu Thr Gly Xaa Thr Ile Ala Leu Glu Val Glu Pro
85 90 95
Asn Asp




43


39


PRT


Leishmania major



43
Leu Gln Gln Arg Leu Asp Thr Ala Thr Gln Gln Arg Ala Glu Leu Glu
1 5 10 15
Ala Arg Val Ala Arg Leu Ala Ala Asp Arg Asp Glu Ala Arg Gln Gln
20 25 30
Leu Ala Ala Asn Ala Glu Glu
35




44


600


DNA


Leishmania chagasi




misc_feature




(1)...(600)




n = A,T,C or G





44
cggccgcctc agcgaggagg agatcgagcg catggtgcgc gaggctgccg agttcgagga 60
tgaggaccgc aaggtgcgcg aacgtgtcga agcgaagaac tcgctagaga gcatcgcgta 120
ctcgcttcgc aaccagatca acgacaagga caagcttggt gacaagctcg ccgcggacga 180
caagaaggcg atcgaggagg ctgtgaagga tgccctcgac tttgtccacg agaaccccaa 240
tgcagaccgt gaggagttcg aggctgctcg cacgaagctg cagagtgtga cgaaccccat 300
cattcaaaag gtgtaccagg gcgccgccgg ctctggtgca gaagaggcgg acgcgatgga 360
tgacttgtta gtcggccgcg tgaaaagaaa aacagggaaa gcgggaacat nccacaanaa 420
ccnaagaaga aagggggtng cgacaccgct cgaacaccga cggcncacat ncntcatggg 480
catgctcagc tttcctctcc ccaacaaacc agaaggtttt ctccaaacnc cgtctcngcn 540
cccaaaatac ggaaangtta ancgaaaaan ccccttccac caattgnngt tcttttgttt 600




45


1748


DNA


Leishmania chagasi



45
ctagtggatc ccccgggctg caggaattca cggaatacgt acctcctccc ccttcttggt 60
agaagaacaa caacaacgtt caagacgacg ccgcgccttc ttgtaccgca tttgcttctg 120
agcacgttca atccgtgcct tgcaaacatg gaggcgtaca agaagctgga aacgatcttt 180
acgaaggtct accgcctgga ccacttcctc ggtctgggca actgggacat gaacacaaac 240
atgcccccca agggcgagga atcacgcggt gaggcgatgg cgatgctctc ggagctccgc 300
tttggcttca tcacggcacc ggaggtgaaa agcctgattg agagtgccac caagggcagc 360
gaggagctga atgcggtgca gcgcgctaac ttgcgggaga tgaggcgtgc gtggaagagc 420
gccaccgcct tgccggctga gtttgtgggc cgcaagatgc gcctcacgac acacgcgcac 480
agcgtgtggc gcgacagccg caaagcaaat gacttcgcca agttcctacc ggtgctcagg 540
gacctggtgg cgctcgcccg tgaggagggc tcatacctcg ccgccggcac ctccctctcc 600
ccgtatgagg cgctcatgaa cgagtacgag ccaggaatca cgacacaaaa gctggatgag 660
gtgtacgcaa atgtaaagtc gtggctgccg cagctgctaa aggacattgt gcagaagcag 720
tccggcgagt cggtgattgc gttctcgcat aagttcccgc aggacaagca ggaagcactg 780
tgcaaggaat tcatgaagat ctggcacttc gacaccgatg ccggtcgcct cgacgtcagc 840
ccccaccctt tcacgggaat gacgaaggag gactgccgac tcacaacaaa ctacatcgaa 900
gacacgtttg ttcagagctt gtatggcgtc atccacgaga gtgggcatgg caagtacgag 960
cagaactgtg gcccacgcga gcacatcacg cagccggtgt gcaacgcccg ctctcttggc 1020
ctgcatgaga gccagagcct ctttgcggag tttcagatcg gccacgcgac gcccttcatc 1080
gactacctca caactcgcct tcctgagttc ttcgaggcgc agccagcgtt ctcgcaggac 1140
aacatgcgca agtcgctgca gcaggtgaag ccgggctaca ttcgcgtcga tgccgatgag 1200
gtgtgctacc ctctgcacgt gatcctgcgc tacgagatcg agcgcgactt gatggagggc 1260
aaaatggagg tggaagacgt gccgcgcgcg tggaacgcaa agatgcagga gtacttgggt 1320
ctctcaacgg agggccgtga cgacgttggg tgcctgcagg acgtgcattg gtccatggtg 1380
cgctcggcta ctctccgacg tactcgctcg gcgccatgta tgcggcgcag atcatggcga 1440
gcatccgaaa ggagctggga gacgacaagg tggatgagtg cctgcgcacc ggtgagctcg 1500
gccccctcct ggaaaagcag caggagaaga tctgggatca tgggtgcctg tacgagacgg 1560
acgacctcat gacgcgtgcg acgggcgaga cgctgaaccc cgagtacctg cgccgccacc 1620
tggaggcgcg ctacataaac gcctgagtcg cgagcggttg acacacgcgc tcgctagcac 1680
atgacgcgtc tttattattc tttgttgtgc attcggaatt ccgcggaatt cgatatcaag 1740
cttatcga 1748




46


560


DNA


Leishmania chagasi




misc_feature




(1)...(560)




n = A,T,C or G





46
cggaaggagg atggccatac acagaaaaat gacggcgatg gccctaagga ggacggccgt 60
acacagaaaa acgacgacgg tggccctaag gaggacggcc atacacagaa aaatgacggc 120
gatggcccta aggaggacgg ccgtacacag aaaaataacg gcgatggccc tnaggaggac 180
ggccatacac agaaaaatga cggcgatgcc cctnaggagg acggccgtac acanaaaaat 240
gacggcnatg gccctnagga ggacggccgt acacagaaaa atgacngcca tggcccttag 300
gangacgccg tacacagaaa aatgacgcna tggccctnag ggaggacggc catacccana 360
aaaattgacg gcnatngccc ttaggangac ggccgtnccc anaaanantg acngcggtng 420
cccttaagga agatgaaaat ctgccaccaa aacnattggg aatgcncagg aaaanaacna 480
anatngaccc cacgtggggg atgganctta cngcnattaa nattgttacc attatcnacc 540
naaggacnng ttgccgncaa 560




47


600


DNA


Leishmania chagasi




misc_feature




(1)...(600)




n = A,T,C or G





47
cgtccgagaa acccgtacat gtatgctgct ggtagaaggc gcagagctgg tccctctgat 60
gcacaagcat gaggtcgtac attgcctggt tcgtcatttt ccagagcaca acgagcagcg 120
tcatcataca gcatccaata gccgccagag tgaatgcgat gcgcacacca agtcgaaagt 180
ggtcgaccag taggggaatg tgaccctggc tggcgtgcaa catgatcgcc acgccagcgg 240
tgggccacac cacaacagag gcgacgaaag agaacatgaa cttgctcacg aagctnacaa 300
taagggcgtc gctngtgatg ctaagaacca cgccnaggta gacggcgaag ancaaactaa 360
acacaagcgt gacgatcccg aaaagaagga tctctgcgga attttcgtga gataganaat 420
gcccgtactg gaaaaanaag ccggcaggcg cgcgataacg ctgcaacttg ccgctcctcg 480
cgggcgcgtt ttcgctcctt ctccgacttg atggcgcngt cngncttgac aaaacggtta 540
agctcctcat gccccagccg attcccagct cacggtccac ttccggccat gcccacggac 600




48


1053


DNA


Leishmania chagasi




misc_feature




(1)...(1053)




n = A,T,C or G





48
gggaaaaaag tggagctcca ccgcggtggc ggccgctcta gaactagtgg atcccccggg 60
ctgcaggaat tccgcggaat tccgcggaat tccgcggaat tccgtccgac gcggcacccg 120
cacaggggtc gacagtgacg caacctcctc caccactgcg gcctacgacg gcgccggctc 180
cgcgccagtg atggttgacg ccaatgtgag ccaccctccg tacgcggggc atgaccaagt 240
gtacatgcac gtcggcaagc ccatcgtggg caacaccctc gacggataca acgggtgcgt 300
gttcgcctac gggcanacgg gcagcggcaa aaccttcacg atgctcggnt acgcgccgag 360
cacgancgac atccgcgctc gcaaagggtc cgtcccctgc ggggccagca gcatggagaa 420
cagcactcct cttgacagcg ctgtggagcc gtttgagagc gatgacggcg acgacgtggt 480
ggacaagacg gggctggatc cgaacgagct gcaaggcatc atcccgcgcg cgtgcacgga 540
cctgttcgat ggtctccgtg cgaagcgcgc caaggactcc gacttcacgt accgcgtgga 600
ggtgtcttac tacgagatct acaacgagaa ggtgttcgat ctcatccggc cgcagcgcaa 660
cacggacctg aggatacgta actcgcccaa ctccggtcca tttatcgaag gcctgacgtg 720
gaagatggtg tccaaggagg aagacgtcgc ccgcgtgatt cgcaagggca tgcaggagcg 780
ccacacggct gcgaccaagt tcaacgaccg cagcagccgc agccacgcca tcctcacctt 840
caacattgtg cagctgtcga tggacgactc cgacaacgcg ttccagatgc gcagcaagct 900
gaacctggtg gaccttgctg ggtcggagcg cactggtgcg gccggagccg agggcaatga 960
gttccacgac ggtgtgaaga tcaaccactc gctgacggtg ctggggcgcg tgatcgaccg 1020
tctggcggac ctctcgcaga acaagggagg ggg 1053




49


136


PRT


Leishmania chagasi



49
Gly Arg Leu Ser Glu Glu Glu Ile Glu Arg Met Val Arg Glu Ala Ala
1 5 10 15
Glu Phe Glu Asp Glu Asp Arg Lys Val Arg Glu Arg Val Glu Ala Lys
20 25 30
Asn Ser Leu Glu Ser Ile Ala Tyr Ser Leu Arg Asn Gln Ile Asn Asp
35 40 45
Lys Asp Lys Leu Gly Asp Lys Leu Ala Ala Asp Asp Lys Lys Ala Ile
50 55 60
Glu Glu Ala Val Lys Asp Ala Leu Asp Phe Val His Glu Asn Pro Asn
65 70 75 80
Ala Asp Arg Glu Glu Phe Glu Ala Ala Arg Thr Lys Leu Gln Ser Val
85 90 95
Thr Asn Pro Ile Ile Gln Lys Val Tyr Gln Gly Ala Ala Gly Ser Gly
100 105 110
Ala Glu Glu Ala Asp Ala Met Asp Asp Leu Leu Val Gly Arg Val Lys
115 120 125
Arg Lys Thr Gly Lys Ala Gly Thr
130 135




50


510


PRT


Leishmania chagasi



50
Tyr Leu Leu Pro Leu Leu Gly Arg Arg Thr Thr Thr Thr Phe Lys Thr
1 5 10 15
Thr Pro Arg Leu Leu Val Pro His Leu Leu Leu Ser Thr Phe Asn Pro
20 25 30
Cys Leu Ala Asn Met Glu Ala Tyr Lys Lys Leu Glu Thr Ile Phe Thr
35 40 45
Lys Val Tyr Arg Leu Asp His Phe Leu Gly Leu Gly Asn Trp Asp Met
50 55 60
Asn Thr Asn Met Pro Pro Lys Gly Glu Glu Ser Arg Gly Glu Ala Met
65 70 75 80
Ala Met Leu Ser Glu Leu Arg Phe Gly Phe Ile Thr Ala Pro Glu Val
85 90 95
Lys Ser Leu Ile Glu Ser Ala Thr Lys Gly Ser Glu Glu Leu Asn Ala
100 105 110
Val Gln Arg Ala Asn Leu Arg Glu Met Arg Arg Ala Trp Lys Ser Ala
115 120 125
Thr Ala Leu Pro Ala Glu Phe Val Gly Arg Lys Met Arg Leu Thr Thr
130 135 140
His Ala His Ser Val Trp Arg Asp Ser Arg Lys Ala Asn Asp Phe Ala
145 150 155 160
Lys Phe Leu Pro Val Leu Arg Asp Leu Val Ala Leu Ala Arg Glu Glu
165 170 175
Gly Ser Tyr Leu Ala Ala Gly Thr Ser Leu Ser Pro Tyr Glu Ala Leu
180 185 190
Met Asn Glu Tyr Glu Pro Gly Ile Thr Thr Gln Lys Leu Asp Glu Val
195 200 205
Tyr Ala Asn Val Lys Ser Trp Leu Pro Gln Leu Leu Lys Asp Ile Val
210 215 220
Gln Lys Gln Ser Gly Glu Ser Val Ile Ala Phe Ser His Lys Phe Pro
225 230 235 240
Gln Asp Lys Gln Glu Ala Leu Cys Lys Glu Phe Met Lys Ile Trp His
245 250 255
Phe Asp Thr Asp Ala Gly Arg Leu Asp Val Ser Pro His Pro Phe Thr
260 265 270
Gly Met Thr Lys Glu Asp Cys Arg Leu Thr Thr Asn Tyr Ile Glu Asp
275 280 285
Thr Phe Val Gln Ser Leu Tyr Gly Val Ile His Glu Ser Gly His Gly
290 295 300
Lys Tyr Glu Gln Asn Cys Gly Pro Arg Glu His Ile Thr Gln Pro Val
305 310 315 320
Cys Asn Ala Arg Ser Leu Gly Leu His Glu Ser Gln Ser Leu Phe Ala
325 330 335
Glu Phe Gln Ile Gly His Ala Thr Pro Phe Ile Asp Tyr Leu Thr Thr
340 345 350
Arg Leu Pro Glu Phe Phe Glu Ala Gln Pro Ala Phe Ser Gln Asp Asn
355 360 365
Met Arg Lys Ser Leu Gln Gln Val Lys Pro Gly Tyr Ile Arg Val Asp
370 375 380
Ala Asp Glu Val Cys Tyr Pro Leu His Val Ile Leu Arg Tyr Glu Ile
385 390 395 400
Glu Arg Asp Leu Met Glu Gly Lys Met Glu Val Glu Asp Val Pro Arg
405 410 415
Ala Trp Asn Ala Lys Met Gln Glu Tyr Leu Gly Leu Ser Thr Glu Gly
420 425 430
Arg Asp Asp Val Gly Cys Leu Gln Asp Val His Trp Ser Met Val Arg
435 440 445
Ser Ala Thr Leu Arg Arg Thr Arg Ser Ala Pro Cys Met Arg Arg Arg
450 455 460
Ser Trp Arg Ala Ser Glu Arg Ser Trp Glu Thr Thr Arg Trp Met Ser
465 470 475 480
Ala Cys Ala Pro Val Ser Ser Ala Pro Ser Trp Lys Ser Ser Arg Arg
485 490 495
Arg Ser Gly Ile Met Gly Ala Cys Thr Arg Arg Thr Thr Ser
500 505 510




51


107


PRT


Leishmania chagasi




VARIANT




(1)...(107)




Xaa = Any Amino Acid





51
Gly Arg Arg Met Ala Ile His Arg Lys Met Thr Ala Met Ala Leu Arg
1 5 10 15
Arg Thr Ala Val His Arg Lys Thr Thr Thr Val Ala Leu Arg Arg Thr
20 25 30
Ala Ile His Arg Lys Met Thr Ala Met Ala Leu Arg Arg Thr Ala Val
35 40 45
His Arg Lys Ile Thr Ala Met Ala Leu Arg Arg Thr Ala Ile His Arg
50 55 60
Lys Met Thr Ala Met Pro Leu Arg Arg Thr Ala Val His Xaa Lys Met
65 70 75 80
Thr Ala Met Ala Leu Arg Arg Thr Ala Val His Arg Lys Met Thr Ala
85 90 95
Met Ala Leu Arg Xaa Thr Pro Tyr Thr Glu Lys
100 105




52


63


PRT


Leishmania chagasi



52
Val Arg Glu Thr Arg Thr Cys Met Leu Leu Val Glu Gly Ala Glu Leu
1 5 10 15
Val Pro Leu Met His Lys His Glu Val Val His Cys Leu Val Arg His
20 25 30
Phe Pro Glu His Asn Glu Gln Arg His His Thr Ala Ser Asn Ser Arg
35 40 45
Gln Ser Glu Cys Asp Ala His Thr Lys Ser Lys Val Val Asp Gln
50 55 60




53


324


PRT


Leishmania chagasi




VARIANT




(1)...(324)




Xaa = Any Amino Acid





53
Phe Arg Gly Ile Pro Arg Asn Ser Val Arg Arg Gly Thr Arg Thr Gly
1 5 10 15
Val Asp Ser Asp Ala Thr Ser Ser Thr Thr Ala Ala Tyr Asp Gly Ala
20 25 30
Gly Ser Ala Pro Val Met Val Asp Ala Asn Val Ser His Pro Pro Tyr
35 40 45
Ala Gly His Asp Gln Val Tyr Met His Val Gly Lys Pro Ile Val Gly
50 55 60
Asn Thr Leu Asp Gly Tyr Asn Gly Cys Val Phe Ala Tyr Gly Xaa Thr
65 70 75 80
Gly Ser Gly Lys Thr Phe Thr Met Leu Gly Tyr Ala Pro Ser Thr Xaa
85 90 95
Asp Ile Arg Ala Arg Lys Gly Ser Val Pro Cys Gly Ala Ser Ser Met
100 105 110
Glu Asn Ser Thr Pro Leu Asp Ser Ala Val Glu Pro Phe Glu Ser Asp
115 120 125
Asp Gly Asp Asp Val Val Asp Lys Thr Gly Leu Asp Pro Asn Glu Leu
130 135 140
Gln Gly Ile Ile Pro Arg Ala Cys Thr Asp Leu Phe Asp Gly Leu Arg
145 150 155 160
Ala Lys Arg Ala Lys Asp Ser Asp Phe Thr Tyr Arg Val Glu Val Ser
165 170 175
Tyr Tyr Glu Ile Tyr Asn Glu Lys Val Phe Asp Leu Ile Arg Pro Gln
180 185 190
Arg Asn Thr Asp Leu Arg Ile Arg Asn Ser Pro Asn Ser Gly Pro Phe
195 200 205
Ile Glu Gly Leu Thr Trp Lys Met Val Ser Lys Glu Glu Asp Val Ala
210 215 220
Arg Val Ile Arg Lys Gly Met Gln Glu Arg His Thr Ala Ala Thr Lys
225 230 235 240
Phe Asn Asp Arg Ser Ser Arg Ser His Ala Ile Leu Thr Phe Asn Ile
245 250 255
Val Gln Leu Ser Met Asp Asp Ser Asp Asn Ala Phe Gln Met Arg Ser
260 265 270
Lys Leu Asn Leu Val Asp Leu Ala Gly Ser Glu Arg Thr Gly Ala Ala
275 280 285
Gly Ala Glu Gly Asn Glu Phe His Asp Gly Val Lys Ile Asn His Ser
290 295 300
Leu Thr Val Leu Gly Arg Val Ile Asp Arg Leu Ala Asp Leu Ser Gln
305 310 315 320
Asn Lys Gly Gly




54


1585


DNA


Leishmania major




misc_feature




(1)...(1585)




n = A,T,C or G





54
aaagctggag ctccaccgcg gtggcggccg ctctagaact agtggatccc ccgggctgca 60
ggaattcggc acgagtgctg cccgacatga catgctcgct gaccggactt cagtgcacag 120
acccgaactg caagacctgc acaacttacg gtcagtgcac agactgcaac gacggctacg 180
gtctcacctc ctccagcgtt tgcgtgcgct gcagtgtagc gggctgcaag agctgccccg 240
tcgacgctaa cgtctgcaaa gtgtgtctcg gcggcagcga gccgatcaac aatatgtgcc 300
cctgcaccga ccccaactgc gccagctgcc ccagcgacgc tggcacgtgc actcagtgcg 360
cgaacggcta cggtctcgtg gacggcgcct gtgtgagatg ccaggagccc aactgcttca 420
gctgcgacag cgacgcgaat aagtgcacac aatgtgcgcc gaactactac ctcaccccgc 480
tcttgacctg ctccccggtg gcctgcaaca tcgagcactg catgcagtgc gacccacaga 540
cgccgtcgcg ctgccaggag tgcgtgtccc cctacgtggt tgacagctac gacggcctct 600
gcaggctctc cgatgcctgc tccgtgccca actgcaagaa gtgcgagacc ggtacctcca 660
ggctctgcgc cgagtgcgac accggctaca gtctctccgc cgacgcgacg agctgcagca 720
gtccaaccac gcagccgtgc gaggtggagc actgcaacac atgtgtgaac ggcgatagca 780
cccgctgtgc ctactgcaac accggctact acgtctccga tggcaagtgc aaggccatgc 840
agggctgcta cgtgtcgaac tgcgcgcagt gcatgctgct tgacagcacc aagtgctcca 900
cgtgcgtgaa agggtacctg ctcacgtcgt cctacagttg cgtctcgcag aaagtcatca 960
acagtgcggc cgcgccctac tctctgtggg tggccgccgc cgtgctcctc acctcttttg 1020
ccatgcacct agcatagtgc gcagcggcat gcgaacaacc ccactctcat tctccaacat 1080
gtgcatacac acacacacag acagcggggc agcaccccct ccccacacac acacacgcac 1140
ttcccccttg tcttgttctt ctttcctcgn ttcgcatttc tttctctcgt gcgctggcgc 1200
cggcctcctg cacgtcgctc ccctccccct aacctctatt ctctctctct ctctctctcg 1260
ccggcatcat tgcttcttac ccttttctga tccttgctcg cgtgggcgga cactgccaca 1320
gtcccacagc gcagacacac gtgtttaaac ggcgcaggca tccctcccta tcacttcatt 1380
tctcctaaag ccactcacca agtcgcacac cgccctcccc catcggccgc ccttccgggc 1440
gcagctgtgc ggaatgggtg tgtgctcgac ctcgttcctg gcagctcact cgcatgtgta 1500
cagccactcc aaccacgaaa gctctcttct gcgcacataa aaaaaaaaaa aaaaaaaaaa 1560
ctcgaggggg ggcccggtac ccaaa 1585




55


320


PRT


Leishmania major



55
Val Leu Pro Asp Met Thr Cys Ser Leu Thr Gly Leu Gln Cys Thr Asp
1 5 10 15
Pro Asn Cys Lys Thr Cys Thr Thr Tyr Gly Gln Cys Thr Asp Cys Asn
20 25 30
Asp Gly Tyr Gly Leu Thr Ser Ser Ser Val Cys Val Arg Cys Ser Val
35 40 45
Ala Gly Cys Lys Ser Cys Pro Val Asp Ala Asn Val Cys Lys Val Cys
50 55 60
Leu Gly Gly Ser Glu Pro Ile Asn Asn Met Cys Pro Cys Thr Asp Pro
65 70 75 80
Asn Cys Ala Ser Cys Pro Ser Asp Ala Gly Thr Cys Thr Gln Cys Ala
85 90 95
Asn Gly Tyr Gly Leu Val Asp Gly Ala Cys Val Arg Cys Gln Glu Pro
100 105 110
Asn Cys Phe Ser Cys Asp Ser Asp Ala Asn Lys Cys Thr Gln Cys Ala
115 120 125
Pro Asn Tyr Tyr Leu Thr Pro Leu Leu Thr Cys Ser Pro Val Ala Cys
130 135 140
Asn Ile Glu His Cys Met Gln Cys Asp Pro Gln Thr Pro Ser Arg Cys
145 150 155 160
Gln Glu Cys Val Ser Pro Tyr Val Val Asp Ser Tyr Asp Gly Leu Cys
165 170 175
Arg Leu Ser Asp Ala Cys Ser Val Pro Asn Cys Lys Lys Cys Glu Thr
180 185 190
Gly Thr Ser Arg Leu Cys Ala Glu Cys Asp Thr Gly Tyr Ser Leu Ser
195 200 205
Ala Asp Ala Thr Ser Cys Ser Ser Pro Thr Thr Gln Pro Cys Glu Val
210 215 220
Glu His Cys Asn Thr Cys Val Asn Gly Asp Ser Thr Arg Cys Ala Tyr
225 230 235 240
Cys Asn Thr Gly Tyr Tyr Val Ser Asp Gly Lys Cys Lys Ala Met Gln
245 250 255
Gly Cys Tyr Val Ser Asn Cys Ala Gln Cys Met Leu Leu Asp Ser Thr
260 265 270
Lys Cys Ser Thr Cys Val Lys Gly Tyr Leu Leu Thr Ser Ser Tyr Ser
275 280 285
Cys Val Ser Gln Lys Val Ile Asn Ser Ala Ala Ala Pro Tyr Ser Leu
290 295 300
Trp Val Ala Ala Ala Val Leu Leu Thr Ser Phe Ala Met His Leu Ala
305 310 315 320




56


14


PRT


Leishmania major



56
Pro Lys Glu Asp Gly His Ala Pro Lys Asn Asp Asp His Ala
1 5 10




57


7


PRT


Leishmania major



57
Pro Lys Glu Asp Gly His Ala
1 5




58


7


PRT


Leishmania major



58
Pro Lys Asn Asp Asp His Ala
1 5




59


264


DNA


Leishmania chagasi



59
atgcaccatc atcaccatca catgggaagc tcctgcacga aggactccgc aaaggagccc 60
cagaagcgtg ctgataacat cgatacgacc actcgaagcg atgagaagga cggcatccat 120
gtccaggaga gcgccggtcc tgtgcaggag aacttcgggg atgcgcagga gaagaacgaa 180
gatggacaca acgtggggga tggagctaac gacaatgagg atggtaacga tgatcagccg 240
aaggagcagg ttgccggcaa ctag 264




60


744


DNA


Leishmania chagasi



60
atgggagcct actgcacgaa ggactccgca aaggagcccc agaagcgtgc tgataacatc 60
cataaaacca ctgaggccaa tcacagaggc gccgccggtg tgcccccgaa gcacgccggc 120
ggtgcgatga acgactctgc cccgaaggag gatggccata cacagaaaaa tgacggcgat 180
ggccctaagg aggacggccg tacacagaaa aacgacgacg gtggccctaa ggaggacggc 240
catacacaga aaaatgacgg cgatggccct aaggaggacg gccgtacaca gaaaaataac 300
ggcgatggcc ctaaggagga cggccataca cagaaaaatg acggcgatgc ccctaaggag 360
gacggccgta cacagaaaaa tgacggcgat ggccctaagg aggacggccg tacacagaaa 420
aatgacggcg atggccctaa ggaggacggc cgtacacaga aaaatgacgg cgatggccct 480
aaggaggacg gccgtacaca gaaaaatgac ggcgatggcc ctaaggagga cggccataca 540
cagaaaaatg acggcgatgg ccctaaggag gacggccgta cacagaaaaa tgacggcggt 600
ggccctaagg aggatgagaa tctgcagcaa aacgatggga atgcgcagga gaagaacgaa 660
gatggacaca acgtggggga tggagctaac ggcaatgagg atggtaacga tgatcagccg 720
aaggagcagg ttgccggcaa ctag 744




61


80


PRT


Leishmania chagasi



61
Met Gly Ser Ser Cys Thr Lys Asp Ser Ala Lys Glu Pro Gln Lys Arg
1 5 10 15
Ala Asp Asn Ile Asp Thr Thr Thr Arg Ser Asp Glu Lys Asp Gly Ile
20 25 30
His Val Gln Glu Ser Ala Gly Pro Val Gln Glu Asn Phe Gly Asp Ala
35 40 45
Gln Glu Lys Asn Glu Asp Gly His Asn Val Gly Asp Gly Ala Asn Asp
50 55 60
Asn Glu Asp Gly Asn Asp Asp Gln Pro Lys Glu Gln Val Ala Gly Asn
65 70 75 80




62


247


PRT


Leishmania chagasi



62
Met Gly Ala Tyr Cys Thr Lys Asp Ser Ala Lys Glu Pro Gln Lys Arg
1 5 10 15
Ala Asp Asn Ile His Lys Thr Thr Glu Ala Asn His Arg Gly Ala Ala
20 25 30
Gly Val Pro Pro Lys His Ala Gly Gly Ala Met Asn Asp Ser Ala Pro
35 40 45
Lys Glu Asp Gly His Thr Gln Lys Asn Asp Gly Asp Gly Pro Lys Glu
50 55 60
Asp Gly Arg Thr Gln Lys Asn Asp Asp Gly Gly Pro Lys Glu Asp Gly
65 70 75 80
His Thr Gln Lys Asn Asp Gly Asp Gly Pro Lys Glu Asp Gly Arg Thr
85 90 95
Gln Lys Asn Asn Gly Asp Gly Pro Lys Glu Asp Gly His Thr Gln Lys
100 105 110
Asn Asp Gly Asp Ala Pro Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp
115 120 125
Gly Asp Gly Pro Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp Gly Asp
130 135 140
Gly Pro Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp Gly Asp Gly Pro
145 150 155 160
Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp Gly Asp Gly Pro Lys Glu
165 170 175
Asp Gly His Thr Gln Lys Asn Asp Gly Asp Gly Pro Lys Glu Asp Gly
180 185 190
Arg Thr Gln Lys Asn Asp Gly Gly Gly Pro Lys Glu Asp Glu Asn Leu
195 200 205
Gln Gln Asn Asp Gly Asn Ala Gln Glu Lys Asn Glu Asp Gly His Asn
210 215 220
Val Gly Asp Gly Ala Asn Gly Asn Glu Asp Gly Asn Asp Asp Gln Pro
225 230 235 240
Lys Glu Gln Val Ala Gly Asn
245




63


14


PRT


Leishmania chagasi




VARIANT




(6)...(6)




Xaa = His or Arg





63
Pro Lys Glu Asp Gly Xaa Thr Gln Lys Asn Asp Xaa Xaa Gly
1 5 10




64


7


PRT


Leishmania chagasi




VARIANT




(6)...(6)




Xaa = His or Arg





64
Pro Lys Glu Asp Gly Xaa Thr
1 5




65


7


PRT


Leishmania chagasi




VARIANT




(5)...(5)




Xaa = Gly or Asp





65
Gln Lys Asn Asp Xaa Xaa Gly
1 5




66


17


PRT


Artificial Sequence




Synthetic peptide to asses diagnostic potential
of repeat in Lc Gene B






66
Gly Cys Gly Pro Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp Gly Asp
1 5 10 15
Gly




67


31


PRT


Artificial Sequence




Synthetic peptide to asses diagnostic potential
of repeat in Lc Gene B






67
Gly Cys Gly Pro Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp Gly Asp
1 5 10 15
Gly Pro Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp Gly Asp Gly
20 25 30




68


45


PRT


Artificial Sequence




Synthetic peptide to asses diagnostic potential
of repeat in Lc Gene B






68
Gly Cys Gly Pro Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp Gly Asp
1 5 10 15
Gly Pro Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp Gly Asp Gly Pro
20 25 30
Lys Glu Asp Gly Arg Thr Gln Lys Asn Asp Gly Asp Gly
35 40 45




69


17


PRT


Artificial Sequence




Synthetic peptide to asses diagnostic potential
of repeat in Lc Gene B






69
Gly Cys Gly Pro Lys Glu Asp Gly His Thr Gln Lys Asn Asp Gly Asp
1 5 10 15
Gly




70


31


PRT


Artificial Sequence




Synthetic peptide to asses diagnostic potential
of repeat in Lc Gene B






70
Gly Cys Gly Pro Lys Glu Asp Gly His Thr Gln Lys Asn Asp Gly Asp
1 5 10 15
Gly Pro Lys Glu Asp Gly His Thr Gln Lys Asn Asp Gly Asp Gly
20 25 30




71


45


PRT


Gly Cys Gly Pro Lys Glu Asp Gly His Thr Gln




Synthetic peptide to asses diagnostic potential
of repeat in Lc Gene B






71
Gly Cys Gly Pro Lys Glu Asp Gly His Thr Gln Lys Asn Asp Gly Asp
1 5 10 15
Gly Pro Lys Glu Asp Gly His Thr Gln Lys Asn Asp Gly Asp Gly Pro
20 25 30
Lys Glu Asp Gly His Thr Gln Lys Asn Asp Gly Asp Gly
35 40 45




72


664


DNA


Leishmania major




misc_feature




(1)...(664)




n = A,T,C or G





72
gctgcaggaa ttcggcacga gattgcttcc cagcccacct tcgctatcca gccactctcg 60
ctcttctaca tctcccaccc cctcacaccg ccatggcttc ttcccgcaag gcttccaacc 120
cgcacaagtc gcaccgcaag ccgaagcgct cgtggaacgt gtacgtgggc cgctcgctga 180
aggcgatcaa cgcccagatg tcgatgtcgc accgcacgat gaagatcgtg aactcgtacg 240
tgaacgacgt gatggagcgc atctgcactg aggccgcgtc gattgttcgc gcgaacaaga 300
agcgcacgtt gggtgcgcgc gaggtgcaga cggcggtgcg cattgtgctg ccggcggagc 360
tcgcgaagca tgccatggct gagggcacga aggccgtgtc gagcgcgtcc cgctaaagcg 420
gcttgccgga tgccgtgtga gtaggagggt ggcttgccgc aaacgctgac ctcggcgatt 480
gcggcgtggc gctccccttc tcctccttgt ccggcggtgt gtgtcatgca tttgcgtgac 540
tcctccctct tatagatgca agcttttttt ttctcttgac gttttatttt ctcctccccc 600
tcccttaacg tgaagtgtat atganagcgt actggacatg ananaaaaaa aaaanaaact 660
cgag 664




73


1432


DNA


Leishmania major




misc_feature




(1)...(1432)




n = A,T,C or G





73
gatgaagaag aggaggacac caccatcaac aactccgacg tggtggtgcg ctacaagaag 60
gccgcaacgt ggtgcaatga aacgttgcgc gtgcttatcg atgccacaaa acctggcgcc 120
aaggtgtgcg acctgtgccg cctcggtgat gacaccatca ccgccnaggt caagacaatg 180
ttcaaaggca cggaaaaagg catcgctttc ccgacctgca tctcggtcaa caactgcgta 240
tgccacaaca gccctggcgt gtcggacgag acgacgcagc aagagatcgc gatgggtgac 300
gtcgtgcact acgacctggg catccacgtg gacggctact gcgccgtcgt cgcgcacacc 360
attcaggtga cagaggacaa tgagcttggc aaggacgaga aggcggcgcg cgtcattaca 420
gcggcgtaca acatcctgaa cacggcgctg cgccagatgc gtcccggtac gaccatctac 480
caggtgacag acgtagttga gaaggctgcg gagcactaca aggtgactcc ggtagacggc 540
gtcctctcgc atatgatgaa gcgctacatc atagacngat accgctgtat cccgcagcgc 600
agggtcgcgg agcacatggt gcacgactac gatctcgaga aagcgcaggt gtggacgcta 660
gacattgtca tgacctccgg caagggcaag ctgaaggagc gcgatgcgcg gccgtgcgtg 720
ttcaaggtgg ctctggactc caactactct gtgaaaatgg aaagcgcgaa ggaggttcag 780
aaggaaatcg actccnagta tgccaccttc ccctttgcca tccgcaacct ggaggccaag 840
aaggcccgcc tcggtctcaa cgagatggcg aagcacggtg ctgtcatccc gtaccctatt 900
ctcttcgaaa aggaaggcga ggtcgtcgcc catttcaaga ttacggtgct catcagcaac 960
aagaagattg agccgattac cggcctgaag ccgcagaagg ccccggcgct cgagccatac 1020
acggacgaga tgctgcttgc gacgaacaag ctcttcgctg tcgctagaga agaaggcggc 1080
gaagtagacg gccgtggcat ccgtgacgct gtactgcgag ctttcgtagg cgtacgcctc 1140
ttgtgaggcg tacacgtgtg ctgtttgcgg acgaggaggc acccattctg ttccccttct 1200
tcgctaatct tcgcgtttcc tctgacgctg gcttctytgc cggagtgtgg tgaggcgcgt 1260
gggggagaaa cggcccacty gcatgcctgt gcatacgcga gcacggtagg gagcgcggtg 1320
tgtgtgtgtg tgggggggcg tgttacgagt acaaaagagg ctcgatcttt gcgatctttt 1380
ctttctgtaa acaggaacat aagtaaccaa aaaaaaaaaa aaaaaactcg ag 1432




74


873


DNA


Leishmania major




misc_feature




(1)...(873)




n = A,T,C or G





74
ctttattgtc atcactgtaa agcactgttt tttctttcac tttttcttga gtgttttctt 60
ctattcacca tgagcattat caaggaggac gacgccgtgg gctgctacat gacggtgacc 120
ctcgtggacg acaccaaggt ggagggtacc atcttcacct acaattccaa ggagggcatc 180
atagtactcc tgtccctccg cgacgatcag acgaacatga agctaatccg cactccgtac 240
atcaaagact tcagcctttc acacgctgag gagggagcgc acctgccccc ggcactggac 300
tccttcaacg agcttccgtc catgcacgcc ggccgcgaca agtccatctt caagcacgcc 360
agcacgcagc tcaagaacgc cgaggcgaac cgcgaaaagc acttcaactc tgtcacgacc 420
gacacaccga ttgccacact tgatgcgtac ctcaagctcc tgcggctata ccccttaatt 480
gagtggaaca gcgacgaggg tgtcatccag gtctcggaca ccgtcattgt cgtaggagac 540
cccgactggc ggacgcccaa ggcaatgctg gtggacggcg cccctgagaa ggacagaccg 600
cttgtagatc gcctgcaggt tgcgctcggm aacggcaaga agtgattcag tgtgtagcgg 660
acagaacatc gtgtgcttgt gtgtctgttt gangtttgtt tgttttctct ttgtggtact 720
gcgtacgacg gcgccttctc ccggtggtgg gtgagtccat aagcagttga gttctyggtt 780
gtagnaavgc ctyacygccg accatatggg agagggcgaa caaatntttg atagaagttg 840
aaaatcccaa agtyaaaaga aaaaaaaaan aaa 873




75


1238


DNA


Leishmania major




misc_feature




(1)...(1238)




n = A,T,C or G





75
tttctgtact ttattgaaca tcagtagaac acgttcttcc cgcaaagatg gccaagaagc 60
acctcaagcg cttgtatgcg cccaaggact ggatgctgag caagctgacc ggcgtgttcg 120
cgccgcgtcc gcgtccgggt ccgcacaagc tgcgcgagtg cctgccgctn ctggtgatca 180
tccgcaaccg gctgaagtac gcgctgaacg cgcgcgaggg tgagatgatc ctgcgccagg 240
gtctggtgca cgtggacaac cacccgcgcc gcgacggcaa gtatcccgcc ggtttcatgg 300
acgtggtcga gatcccgaag acgggcgacc gcttccgcct gatgtacgac gtcaagggcc 360
gcttcgcgtt ggtgaacctg tccgaggcgg aggcgcagat caagctgatg aaggttgtga 420
acctgtacac ggccaccggc cgcgtgccgg tcgctgtgac gcacgacggc caccgcatcc 480
gctacccgga cccgcacacc tccattggtg acaccatcgt gtacaacgtc aaggagaaga 540
agtgcgtgga cctgatcaag aaccgccagg gcaaggccgt gatcgtgacc ggtggcgcca 600
accgcggccg catcggcgag atcgtgaagg tggagtgcca ccccggtgcg ttcaacattg 660
cgcacctgaa ggacgcgtcc ggcgccgagt tcgccacccg cgccgcgaac atcttcgtga 720
tcggcaagga cctgaacaac ctgcaggtaa cggtgccgaa gcagcagggc ctgcgcatga 780
acgtgatcca ggagcgcgag gagcgcctga tcgcggcgga ggcccgcaag aacgcgccgg 840
ctcgtggtgc ccgcagggcc cgcaagtgag gaggcgatta cacgcatgcg tgtttgtggc 900
tctgaagcga cttggcgggt cggctgtgag ggtttgagag gaggtgtgtg atgcgtgtga 960
agtccttctc cgttctcagc tctctctgtg ctgtagctgt gcctttcccc agatcgcttt 1020
accgcatttg catacatctg tgtagtcgca tgtgcgtgtt tctgtctctc ggtgggtctc 1080
cctctccctc cctttctgcc tctctctttg agtgggtgtg catgcgtcgc gcgcgacggg 1140
ctccgcttna gtgattctct cgtgttttan ggctgtttty tttctyagtt nagcgtttty 1200
gttcatgatt tcctcagacc caaaaaaaaa aaaaaaaa 1238




76


712


DNA


Leishmania major




misc_feature




(1)...(712)




n = A,T,C or G





76
ctgacggagt tccagacgaa ccttgtgccg tacccgcgca tccacttcgt gctgacaagc 60
tacgctccgg tggtgtctgc cgagaaggcg taccacgagc agctntccgt cgcggacatc 120
acgaactcgg tntttgagcc tgctggcatg ctnacaaagt gcgatcctcg ccacggcaag 180
tacatgtcgt gctgcctcat gtaccgcggt gatgtcgtgc cgaaggatgt caacgccgcg 240
attgcgacga tcaagacgaa gcgcacaatt cagttcgtgg actggtgccc gaccggcttc 300
aagtgcggca tcaactacca gccgccgacc gttgtgcccg gcggtgacct cgcgaaggtg 360
cagcgcgccg tgtgcatgat tgccaactcg accgcgatcg ctgaggtgtt tgcccgcatc 420
gaccacaagt tcgacctgat gtacagcaag cgcgcgtttg tgcactggta cgtgggtgag 480
ggcatggagg agggcgagtt ctccgaggcg cgcgaggatc tcgctgcgct ggagaaggac 540
tacgaggagg ttggcgccga gtccgccgac gacatgggcg aggaggacgt cgaggagtac 600
taaggtagac tcgtgccgcg cgctgatgat gtaggtgcac gcgtgcgtgt gctgcagcgg 660
agccgccgcc accgcgactg tgtgtgtgtg cgcgcgtgac gaccggctcg ag 712




77


1086


DNA


Leishmania major




misc_feature




(1)...(1086)




n = A,T,C or G





77
caagaagtgg atcaagcagg agacgaacgc cgatggcgag cgcgtgcgcc gcgcgttctg 60
ccagttctgc ctagacccca tctaccagat cttcgacgct gtgatgaacg agaagaagga 120
caaggtggac aagatgctca agtcgctgca cgtgacgctn acggctgagg agcgcgagca 180
ggtgccgaan aagcttctga agacggtgat gatgaanttc ctgccggctg ctgagacgct 240
gctacagatg atcgtggcgc acctgccgtc gcccaagaag gcgcaggcgt accgtgcgga 300
gatgctgtac tctggcgagg cgtcgccgga ggacaagtac ttcatgggta tcaagaactg 360
cgaccccgct gcgccgctca tgctgtacat cagcaagatg gtgccgacgg ccgaccgcgg 420
ccgcttcttc gcctttggcc gcatcttctc cggtaaggtg cgcagcggcc agaaggtgcg 480
catcatgggt aacaactacg tctacggcaa gaagcaggac ctgtacgagg acaagcctgt 540
gcagcgctcc gtgctgatga tgggccgcta ccaggaggcc gtggaggaca tgccgtgcgg 600
taacgtggtg ggccttgtgg gcgtggacaa gtacatcgtg aagtccgcga cgatcacgga 660
cgatggcgag agcccgcacc cgctgcgcga catgaagtac tctgtgtcgc ccgtcgtgcg 720
tgtggccgtg gaggcgaaga acccgtccga cctgccgaag cttgtggagg gcctgaagcg 780
ccttgccaag tccgacccgc tggtggtgtg cagcattgag gagtctggcg agcacattgt 840
tgccggcgct ggcgagcttc accttgagat ttgcctgaag gatctccagg aggacttcat 900
gaacggcgcg ccgctnaaga tctccgagcc ggtggtgtcg ttccgcgaga cggtgacgga 960
tgtgtcgtcg cagcagtgcc tgtcgaagtc tgcgaacaag cacaaccgtc tcttctgccg 1020
cggtgcgccg ctnacagagg anctggcgct ggcgatngan gaaggcaccg ctggtcccga 1080
ngcgga 1086




78


447


DNA


Leishmania major




misc_feature




(1)...(447)




n = A,T,C or G





78
cgcatcaacg tctacttcga tnagtcgacg ggaggccgct acgtgccgcg cgccgtgctg 60
atggacctcg agcccggcac tatggactcc gttcgcgccg gcccgtacgg ccagctgttc 120
cgcccggaca acttcatctt tggtcagtcc ggcgctggca acaactgggc caagggccac 180
tacactgagg gcgcggagct gatcgactcc gtgcttgatg tgtgccgcaa ggaggcggag 240
agctgcgact gcctgcaggg cttccagctg tctcactccc tcggcggcgg cacgggctcc 300
ggcatgggca cgctgctcat ttccaanctg cgcgangagt acccggaccg gatcatgatg 360
accttctccg tcatcccgtc cccccgcgtg tcggataccg ttgtggancc gtacaacacg 420
accctctctg tgcaccagct cgtggaa 447




79


375


DNA


Leishmania major




misc_feature




(1)...(375)




n = A,T,C or G





79
gtaacccgct ggtgtacgca tatgtagaca cagacgggca gcacgagacg acgttcctcg 60
cgatccctgt ggtgcttggc atgaatggaa tcgagaagcg cctgccgatt ggtccgctgc 120
actcgacgga ggaaacgctg ctgaaggcgg cactgccggt gatcaagaag aatatcgtga 180
agggcagcga gttcgcgcgc tcacacctgt agcacctcag cttttttttt ttgcgttaaa 240
cgggcgtggg aagcacctcg atacttcgct tcgcgctgac ggacccgcac gacatcgttc 300
gtcatccccc tccccctctt cggccctata cgcatgaagg agtggaatta tgcaacagca 360
tgttnatatc aagtg 375




80


107


PRT


Leishmania major



80
Met Ala Ser Ser Arg Lys Ala Ser Asn Pro His Lys Ser His Arg Lys
1 5 10 15
Pro Lys Arg Ser Trp Asn Val Tyr Val Gly Arg Ser Leu Lys Ala Ile
20 25 30
Asn Ala Gln Met Ser Met Ser His Arg Thr Met Lys Ile Val Asn Ser
35 40 45
Tyr Val Asn Asp Val Met Glu Arg Ile Cys Thr Glu Ala Ala Ser Ile
50 55 60
Val Arg Ala Asn Lys Lys Arg Thr Leu Gly Ala Arg Glu Val Gln Thr
65 70 75 80
Ala Val Arg Ile Val Leu Pro Ala Glu Leu Ala Lys His Ala Met Ala
85 90 95
Glu Gly Thr Lys Ala Val Ser Ser Ala Ser Arg
100 105




81


381


PRT


Leishmania major




VARIANT




(1)...(381)




Xaa = Any Amino Acid





81
Asp Glu Glu Glu Glu Asp Thr Thr Ile Asn Asn Ser Asp Val Val Val
1 5 10 15
Arg Tyr Lys Lys Ala Ala Thr Trp Cys Asn Glu Thr Leu Arg Val Leu
20 25 30
Ile Asp Ala Thr Lys Pro Gly Ala Lys Val Cys Asp Leu Cys Arg Leu
35 40 45
Gly Asp Asp Thr Ile Thr Ala Xaa Val Lys Thr Met Phe Lys Gly Thr
50 55 60
Glu Lys Gly Ile Ala Phe Pro Thr Cys Ile Ser Val Asn Asn Cys Val
65 70 75 80
Cys His Asn Ser Pro Gly Val Ser Asp Glu Thr Thr Gln Gln Glu Ile
85 90 95
Ala Met Gly Asp Val Val His Tyr Asp Leu Gly Ile His Val Asp Gly
100 105 110
Tyr Cys Ala Val Val Ala His Thr Ile Gln Val Thr Glu Asp Asn Glu
115 120 125
Leu Gly Lys Asp Glu Lys Ala Ala Arg Val Ile Thr Ala Ala Tyr Asn
130 135 140
Ile Leu Asn Thr Ala Leu Arg Gln Met Arg Pro Gly Thr Thr Ile Tyr
145 150 155 160
Gln Val Thr Asp Val Val Glu Lys Ala Ala Glu His Tyr Lys Val Thr
165 170 175
Pro Val Asp Gly Val Leu Ser His Met Met Lys Arg Tyr Ile Ile Asp
180 185 190
Xaa Tyr Arg Cys Ile Pro Gln Arg Arg Val Ala Glu His Met Val His
195 200 205
Asp Tyr Asp Leu Glu Lys Ala Gln Val Trp Thr Leu Asp Ile Val Met
210 215 220
Thr Ser Gly Lys Gly Lys Leu Lys Glu Arg Asp Ala Arg Pro Cys Val
225 230 235 240
Phe Lys Val Ala Leu Asp Ser Asn Tyr Ser Val Lys Met Glu Ser Ala
245 250 255
Lys Glu Val Gln Lys Glu Ile Asp Ser Xaa Tyr Ala Thr Phe Pro Phe
260 265 270
Ala Ile Arg Asn Leu Glu Ala Lys Lys Ala Arg Leu Gly Leu Asn Glu
275 280 285
Met Ala Lys His Gly Ala Val Ile Pro Tyr Pro Ile Leu Phe Glu Lys
290 295 300
Glu Gly Glu Val Val Ala His Phe Lys Ile Thr Val Leu Ile Ser Asn
305 310 315 320
Lys Lys Ile Glu Pro Ile Thr Gly Leu Lys Pro Gln Lys Ala Pro Ala
325 330 335
Leu Glu Pro Tyr Thr Asp Glu Met Leu Leu Ala Thr Asn Lys Leu Phe
340 345 350
Ala Val Ala Arg Glu Glu Gly Gly Glu Val Asp Gly Arg Gly Ile Arg
355 360 365
Asp Ala Val Leu Arg Ala Phe Val Gly Val Arg Leu Leu
370 375 380




82


191


PRT


Leishmania major



82
Met Ser Ile Ile Lys Glu Asp Asp Ala Val Gly Cys Tyr Met Thr Val
1 5 10 15
Thr Leu Val Asp Asp Thr Lys Val Glu Gly Thr Ile Phe Thr Tyr Asn
20 25 30
Ser Lys Glu Gly Ile Ile Val Leu Leu Ser Leu Arg Asp Asp Gln Thr
35 40 45
Asn Met Lys Leu Ile Arg Thr Pro Tyr Ile Lys Asp Phe Ser Leu Ser
50 55 60
His Ala Glu Glu Gly Ala His Leu Pro Pro Ala Leu Asp Ser Phe Asn
65 70 75 80
Glu Leu Pro Ser Met His Ala Gly Arg Asp Lys Ser Ile Phe Lys His
85 90 95
Ala Ser Thr Gln Leu Lys Asn Ala Glu Ala Asn Arg Glu Lys His Phe
100 105 110
Asn Ser Val Thr Thr Asp Thr Pro Ile Ala Thr Leu Asp Ala Tyr Leu
115 120 125
Lys Leu Leu Arg Leu Tyr Pro Leu Ile Glu Trp Asn Ser Asp Glu Gly
130 135 140
Val Ile Gln Val Ser Asp Thr Val Ile Val Val Gly Asp Pro Asp Trp
145 150 155 160
Arg Thr Pro Lys Ala Met Leu Val Asp Gly Ala Pro Glu Lys Asp Arg
165 170 175
Pro Leu Val Asp Arg Leu Gln Val Ala Leu Gly Asn Gly Lys Lys
180 185 190




83


273


PRT


Leishmania major



83
Met Ala Lys Lys His Leu Lys Arg Leu Tyr Ala Pro Lys Asp Trp Met
1 5 10 15
Leu Ser Lys Leu Thr Gly Val Phe Ala Pro Arg Pro Arg Pro Gly Pro
20 25 30
His Lys Leu Arg Glu Cys Leu Pro Leu Leu Val Ile Ile Arg Asn Arg
35 40 45
Leu Lys Tyr Ala Leu Asn Ala Arg Glu Gly Glu Met Ile Leu Arg Gln
50 55 60
Gly Leu Val His Val Asp Asn His Pro Arg Arg Asp Gly Lys Tyr Pro
65 70 75 80
Ala Gly Phe Met Asp Val Val Glu Ile Pro Lys Thr Gly Asp Arg Phe
85 90 95
Arg Leu Met Tyr Asp Val Lys Gly Arg Phe Ala Leu Val Asn Leu Ser
100 105 110
Glu Ala Glu Ala Gln Ile Lys Leu Met Lys Val Val Asn Leu Tyr Thr
115 120 125
Ala Thr Gly Arg Val Pro Val Ala Val Thr His Asp Gly His Arg Ile
130 135 140
Arg Tyr Pro Asp Pro His Thr Ser Ile Gly Asp Thr Ile Val Tyr Asn
145 150 155 160
Val Lys Glu Lys Lys Cys Val Asp Leu Ile Lys Asn Arg Gln Gly Lys
165 170 175
Ala Val Ile Val Thr Gly Gly Ala Asn Arg Gly Arg Ile Gly Glu Ile
180 185 190
Val Lys Val Glu Cys His Pro Gly Ala Phe Asn Ile Ala His Leu Lys
195 200 205
Asp Ala Ser Gly Ala Glu Phe Ala Thr Arg Ala Ala Asn Ile Phe Val
210 215 220
Ile Gly Lys Asp Leu Asn Asn Leu Gln Val Thr Val Pro Lys Gln Gln
225 230 235 240
Gly Leu Arg Met Asn Val Ile Gln Glu Arg Glu Glu Arg Leu Ile Ala
245 250 255
Ala Glu Ala Arg Lys Asn Ala Pro Ala Arg Gly Ala Arg Arg Ala Arg
260 265 270
Lys




84


200


PRT


Leishmania major



84
Leu Thr Glu Phe Gln Thr Asn Leu Val Pro Tyr Pro Arg Ile His Phe
1 5 10 15
Val Leu Thr Ser Tyr Ala Pro Val Val Ser Ala Glu Lys Ala Tyr His
20 25 30
Glu Gln Leu Ser Val Ala Asp Ile Thr Asn Ser Val Phe Glu Pro Ala
35 40 45
Gly Met Leu Thr Lys Cys Asp Pro Arg His Gly Lys Tyr Met Ser Cys
50 55 60
Cys Leu Met Tyr Arg Gly Asp Val Val Pro Lys Asp Val Asn Ala Ala
65 70 75 80
Ile Ala Thr Ile Lys Thr Lys Arg Thr Ile Gln Phe Val Asp Trp Cys
85 90 95
Pro Thr Gly Phe Lys Cys Gly Ile Asn Tyr Gln Pro Pro Thr Val Val
100 105 110
Pro Gly Gly Asp Leu Ala Lys Val Gln Arg Ala Val Cys Met Ile Ala
115 120 125
Asn Ser Thr Ala Ile Ala Glu Val Phe Ala Arg Ile Asp His Lys Phe
130 135 140
Asp Leu Met Tyr Ser Lys Arg Ala Phe Val His Trp Tyr Val Gly Glu
145 150 155 160
Gly Met Glu Glu Gly Glu Phe Ser Glu Ala Arg Glu Asp Leu Ala Ala
165 170 175
Leu Glu Lys Asp Tyr Glu Glu Val Gly Ala Glu Ser Ala Asp Asp Met
180 185 190
Gly Glu Glu Asp Val Glu Glu Tyr
195 200




85


361


PRT


Leishmania major




VARIANT




(1)...(361)




Xaa = Any Amino Acid





85
Lys Lys Trp Ile Lys Gln Glu Thr Asn Ala Asp Gly Glu Arg Val Arg
1 5 10 15
Arg Ala Phe Cys Gln Phe Cys Leu Asp Pro Ile Tyr Gln Ile Phe Asp
20 25 30
Ala Val Met Asn Glu Lys Lys Asp Lys Val Asp Lys Met Leu Lys Ser
35 40 45
Leu His Val Thr Leu Thr Ala Glu Glu Arg Glu Gln Val Pro Xaa Lys
50 55 60
Leu Leu Lys Thr Val Met Met Xaa Phe Leu Pro Ala Ala Glu Thr Leu
65 70 75 80
Leu Gln Met Ile Val Ala His Leu Pro Ser Pro Lys Lys Ala Gln Ala
85 90 95
Tyr Arg Ala Glu Met Leu Tyr Ser Gly Glu Ala Ser Pro Glu Asp Lys
100 105 110
Tyr Phe Met Gly Ile Lys Asn Cys Asp Pro Ala Ala Pro Leu Met Leu
115 120 125
Tyr Ile Ser Lys Met Val Pro Thr Ala Asp Arg Gly Arg Phe Phe Ala
130 135 140
Phe Gly Arg Ile Phe Ser Gly Lys Val Arg Ser Gly Gln Lys Val Arg
145 150 155 160
Ile Met Gly Asn Asn Tyr Val Tyr Gly Lys Lys Gln Asp Leu Tyr Glu
165 170 175
Asp Lys Pro Val Gln Arg Ser Val Leu Met Met Gly Arg Tyr Gln Glu
180 185 190
Ala Val Glu Asp Met Pro Cys Gly Asn Val Val Gly Leu Val Gly Val
195 200 205
Asp Lys Tyr Ile Val Lys Ser Ala Thr Ile Thr Asp Asp Gly Glu Ser
210 215 220
Pro His Pro Leu Arg Asp Met Lys Tyr Ser Val Ser Pro Val Val Arg
225 230 235 240
Val Ala Val Glu Ala Lys Asn Pro Ser Asp Leu Pro Lys Leu Val Glu
245 250 255
Gly Leu Lys Arg Leu Ala Lys Ser Asp Pro Leu Val Val Cys Ser Ile
260 265 270
Glu Glu Ser Gly Glu His Ile Val Ala Gly Ala Gly Glu Leu His Leu
275 280 285
Glu Ile Cys Leu Lys Asp Leu Gln Glu Asp Phe Met Asn Gly Ala Pro
290 295 300
Leu Lys Ile Ser Glu Pro Val Val Ser Phe Arg Glu Thr Val Thr Asp
305 310 315 320
Val Ser Ser Gln Gln Cys Leu Ser Lys Ser Ala Asn Lys His Asn Arg
325 330 335
Leu Phe Cys Arg Gly Ala Pro Leu Thr Glu Xaa Leu Ala Leu Ala Xaa
340 345 350
Xaa Glu Gly Thr Ala Gly Pro Xaa Ala
355 360




86


149


PRT


Leishmania major




VARIANT




(1)...(149)




Xaa = Any Amino Acid





86
Arg Ile Asn Val Tyr Phe Asp Xaa Ser Thr Gly Gly Arg Tyr Val Pro
1 5 10 15
Arg Ala Val Leu Met Asp Leu Glu Pro Gly Thr Met Asp Ser Val Arg
20 25 30
Ala Gly Pro Tyr Gly Gln Leu Phe Arg Pro Asp Asn Phe Ile Phe Gly
35 40 45
Gln Ser Gly Ala Gly Asn Asn Trp Ala Lys Gly His Tyr Thr Glu Gly
50 55 60
Ala Glu Leu Ile Asp Ser Val Leu Asp Val Cys Arg Lys Glu Ala Glu
65 70 75 80
Ser Cys Asp Cys Leu Gln Gly Phe Gln Leu Ser His Ser Leu Gly Gly
85 90 95
Gly Thr Gly Ser Gly Met Gly Thr Leu Leu Ile Ser Xaa Leu Arg Xaa
100 105 110
Glu Tyr Pro Asp Arg Ile Met Met Thr Phe Ser Val Ile Pro Ser Pro
115 120 125
Arg Val Ser Asp Thr Val Val Xaa Pro Tyr Asn Thr Thr Leu Ser Val
130 135 140
His Gln Leu Val Glu
145




87


69


PRT


Leishmania major



87
Asn Pro Leu Val Tyr Ala Tyr Val Asp Thr Asp Gly Gln His Glu Thr
1 5 10 15
Thr Phe Leu Ala Ile Pro Val Val Leu Gly Met Asn Gly Ile Glu Lys
20 25 30
Arg Leu Pro Ile Gly Pro Leu His Ser Thr Glu Glu Thr Leu Leu Lys
35 40 45
Ala Ala Leu Pro Val Ile Lys Lys Asn Ile Val Lys Gly Ser Glu Phe
50 55 60
Ala Arg Ser His Leu
65




88


54


DNA


Artificial Sequence




PCR primer





88
agtattcata tgcaccacca ccaccaccac atgtcctgcg gtaacgccaa gatc 54




89


33


DNA


Artificial Sequence




PCR primer





89
ctcacaggat ccctgcttgc tgaagtatcc ttc 33




90


36


DNA


Artificial Sequence




PCR primer





90
catttcggat ccatggacgc aactgagctg aagaac 36




91


33


DNA


Artificial Sequence




PCR primer





91
cgtagagaat tcctgaccaa aacgaatgat gcc 33




92


33


DNA


Artificial Sequence




PCR primer





92
caccacgaat tcatggcgca gaatgataag atc 33




93


34


DNA


Artificial Sequence




PCR primer





93
actgacctcg aggaattctt agtcgcgcat gaac 34




94


3012


DNA


Artificial Sequence




DNA sequence encoding fusion (poly-protein)
constructs comprising multiple Leishmania antigens






94
catatgcacc accaccacca ccacatgtcc tgcggtaacg ccaagatcaa ctctcccgcg 60
ccgtccttcg aggaggtggc gctcatgccc aacggcagct tcaagaagat cagcctctcc 120
tcctacaagg gcaagtgggt cgtgctcttc ttctacccgc tcgacttcac cttcgtgtgc 180
ccgacagagg tcatcgcgtt ctccgacagc gtgagtcgct tcaacgagct caactgcgag 240
gtcctcgcgt gctcgataga cagcgagtac gcgcacctgc agtggacgct gcaggaccgc 300
aagaagggcg gcctcgggac catggcgatc ccaatgctag ccgacaagac caagagcatc 360
gctcgttcct acggcgtgct ggaggagagc cagggcgtgg cctaccgcgg tctcttcatc 420
atcgaccccc atggcatgct gcgtcagatc accgtcaatg acatgccggt gggccgcagc 480
gtggaggagg ttctacgcct gctggaggct tttcagttcg tggagaagca cggcgaggtg 540
tgccccgcga actggaagaa gggcgccccc acgatgaagc cggaaccgaa tgcgtctgtc 600
gagggatact tcagcaagca gggatccatg gacgcaactg agctgaagaa caaggggaac 660
gaagagttct ccgccggccg ctatgtggag gcggtgaact acttctcaaa ggcgatccag 720
ttggatgagc agaacagtgt cctctacagc aaccgctccg cctgttttgc agccatgcag 780
aaatacaagg acgcgctgga cgacgccgac aagtgcatct cgatcaagcc gaattgggcc 840
aagggctacg tgcgccgagg agcagctctc catggcatgc gccgctacga cgatgccatt 900
gccgcgtatg aaaaggggct caaggtggac ccttccaaca gcggctgcgc gcagggcgtg 960
aaggacgtgc aggtagccaa ggcccgcgaa gcacgtgacc ccatcgctcg cgtcttcacc 1020
ccggaggcgt tccgcaagat ccaagagaat cccaagctgt ctctacttat gctgcagccg 1080
gactacgtga agatggtaga caccgtcatc cgcgaccctt cgcagggccg gctgtacatg 1140
gaagaccagc gctttgccct gacgctcatg tacctgagcg gaatgaagat tcccaacgat 1200
ggtgatggcg aggaggagga acgtccgtct gcgaaggcgg cagagacagc gaagccaaaa 1260
gaggagaagc ctctcaccga caacgagaag gaggccctgg cgctcaagga ggagggcaac 1320
aagctgtacc tctcgaagaa gtttgaggag gcgctgacca agtaccaaga ggcgcaggtg 1380
aaagacccca acaacacttt atacattctg aacgtgtcgg ccgtgtactt cgagcagggt 1440
gactacgaca agtgcatcgc cgagtgcgag cacggtatcg agcacggtcg cgagaaccac 1500
tgcgactaca caatcattgc gaagctcatg acccggaacg ccttgtgcct ccagaggcag 1560
aggaagtacg aggctgctat cgacctttac aagcgcgccc ttgtcgagtg gcgtaaccct 1620
gacaccctca agaagctgac ggagtgcgag aaggagcacc aaaaggcggt ggaggaagcc 1680
tacatcgatc ctgagatcgc gaagcagaag aaagacgaag gtaaccagta cttcaaggag 1740
gataagttcc ccgaggccgt ggcagcgtac acggaggcca tcaagcgcaa ccctgccgag 1800
cacacctcct acagcaatcg cgcggccgcg tacatcaagc ttggagcctt caacgacgcc 1860
ctcaaggacg cggagaagtg cattgagctg aagcccgact ttgttaaggg ctacgcgcgc 1920
aagggtcatg cttacttttg gaccaagcag tacaaccgcg cgctgcaggc gtacaatgag 1980
ggcctcaagg tggacccgag caatgcggac tgcaaggatg ggcggtatcg cacaatcatg 2040
aagattcagg agatggcatc tggccaatcc gcggatggcg acgaggcggc gcgccgggcc 2100
atggacgatc ctgaaatcgc ggcaatcatg caagatagct acatgcaact agtgttgaag 2160
gagatgcaga acgatcccac gcgcattcag gagtacatga aggactccgg gatctcatcg 2220
aagatcaaca agctgatttc agctggcatc attcgttttg gtcaggaatt catggcgcag 2280
aatgataaga tcgcccccca ggaccaggac tccttcctcg atgaccagcc cggcgttcgc 2340
ccgatcccgt ccttcgacga catgccgctg caccagaacc tgctgcgtgg catctactcg 2400
tacgggttcg agaagccgtc cagcatccag cagcgcgcga tagccccctt cacgcgcggc 2460
ggcgacatca tcgcgcaggc ccagtccggt accggcaaga cgggtgcctt ctccatcggt 2520
ctgctgcagc gcctggactt ccgccacaac ctgatccagg gcctcgtgct ctcccccact 2580
cgcgagctgg ccctgcagac ggcggaggtg atcagccgca tcggtgagtt cctgtcgaac 2640
agctccaagt tctgcgagac ctttgtcggc ggcacgcgcg tgcaggatga cctgcgcaag 2700
ctgcaggccg gcgtcatcgt tgccgtgggc acgccgggcc gcgtgtccga cgtgatcaag 2760
cgtggcgcgc tgcgcacaga gtcgctgcgc gtgctggtgc tcgacgaggc tgatgagatg 2820
ctgtctcagg gcttcgcgga ccagatttac gagatcttcc gcttcctgcc gaaggacatc 2880
caggtcgcgc tcttctccgc cacgatgccg gaggaggtac tggagctgac gaagaagttc 2940
atgcgcgact aagaattcct cgagcagatc cggctgctaa caaagcccga aaggaagctg 3000
aatggctgct gc 3012




95


982


PRT


Artificial Sequence




Fusion (poly-protein) constructs comprising
multiple Leishmania antigens






95
Met His His His His His His Met Ser Cys Gly Asn Ala Lys Ile Asn
5 10 15
Ser Pro Ala Pro Ser Phe Glu Glu Val Ala Leu Met Pro Asn Gly Ser
20 25 30
Phe Lys Lys Ile Ser Leu Ser Ser Tyr Lys Gly Lys Trp Val Val Leu
35 40 45
Phe Phe Tyr Pro Leu Asp Phe Thr Phe Val Cys Pro Thr Glu Val Ile
50 55 60
Ala Phe Ser Asp Ser Val Ser Arg Phe Asn Glu Leu Asn Cys Glu Val
65 70 75 80
Leu Ala Cys Ser Ile Asp Ser Glu Tyr Ala His Leu Gln Trp Thr Leu
85 90 95
Gln Asp Arg Lys Lys Gly Gly Leu Gly Thr Met Ala Ile Pro Met Leu
100 105 110
Ala Asp Lys Thr Lys Ser Ile Ala Arg Ser Tyr Gly Val Leu Glu Glu
115 120 125
Ser Gln Gly Val Ala Tyr Arg Gly Leu Phe Ile Ile Asp Pro His Gly
130 135 140
Met Leu Arg Gln Ile Thr Val Asn Asp Met Pro Val Gly Arg Ser Val
145 150 155 160
Glu Glu Val Leu Arg Leu Leu Glu Ala Phe Gln Phe Val Glu Lys His
165 170 175
Gly Glu Val Cys Pro Ala Asn Trp Lys Lys Gly Ala Pro Thr Met Lys
180 185 190
Pro Glu Pro Asn Ala Ser Val Glu Gly Tyr Phe Ser Lys Gln Gly Ser
195 200 205
Met Asp Ala Thr Glu Leu Lys Asn Lys Gly Asn Glu Glu Phe Ser Ala
210 215 220
Gly Arg Tyr Val Glu Ala Val Asn Tyr Phe Ser Lys Ala Ile Gln Leu
225 230 235 240
Asp Glu Gln Asn Ser Val Leu Tyr Ser Asn Arg Ser Ala Cys Phe Ala
245 250 255
Ala Met Gln Lys Tyr Lys Asp Ala Leu Asp Asp Ala Asp Lys Cys Ile
260 265 270
Ser Ile Lys Pro Asn Trp Ala Lys Gly Tyr Val Arg Arg Gly Ala Ala
275 280 285
Leu His Gly Met Arg Arg Tyr Asp Asp Ala Ile Ala Ala Tyr Glu Lys
290 295 300
Gly Leu Lys Val Asp Pro Ser Asn Ser Gly Cys Ala Gln Gly Val Lys
305 310 315 320
Asp Val Gln Val Ala Lys Ala Arg Glu Ala Arg Asp Pro Ile Ala Arg
325 330 335
Val Phe Thr Pro Glu Ala Phe Arg Lys Ile Gln Glu Asn Pro Lys Leu
340 345 350
Ser Leu Leu Met Leu Gln Pro Asp Tyr Val Lys Met Val Asp Thr Val
355 360 365
Ile Arg Asp Pro Ser Gln Gly Arg Leu Tyr Met Glu Asp Gln Arg Phe
370 375 380
Ala Leu Thr Leu Met Tyr Leu Ser Gly Met Lys Ile Pro Asn Asp Gly
385 390 395 400
Asp Gly Glu Glu Glu Glu Arg Pro Ser Ala Lys Ala Ala Glu Thr Ala
405 410 415
Lys Pro Lys Glu Glu Lys Pro Leu Thr Asp Asn Glu Lys Glu Ala Leu
420 425 430
Ala Leu Lys Glu Glu Gly Asn Lys Leu Tyr Leu Ser Lys Lys Phe Glu
435 440 445
Glu Ala Leu Thr Lys Tyr Gln Glu Ala Gln Val Lys Asp Pro Asn Asn
450 455 460
Thr Leu Tyr Ile Leu Asn Val Ser Ala Val Tyr Phe Glu Gln Gly Asp
465 470 475 480
Tyr Asp Lys Cys Ile Ala Glu Cys Glu His Gly Ile Glu His Gly Arg
485 490 495
Glu Asn His Cys Asp Tyr Thr Ile Ile Ala Lys Leu Met Thr Arg Asn
500 505 510
Ala Leu Cys Leu Gln Arg Gln Arg Lys Tyr Glu Ala Ala Ile Asp Leu
515 520 525
Tyr Lys Arg Ala Leu Val Glu Trp Arg Asn Pro Asp Thr Leu Lys Lys
530 535 540
Leu Thr Glu Cys Glu Lys Glu His Gln Lys Ala Val Glu Glu Ala Tyr
545 550 555 560
Ile Asp Pro Glu Ile Ala Lys Gln Lys Lys Asp Glu Gly Asn Gln Tyr
565 570 575
Phe Lys Glu Asp Lys Phe Pro Glu Ala Val Ala Ala Tyr Thr Glu Ala
580 585 590
Ile Lys Arg Asn Pro Ala Glu His Thr Ser Tyr Ser Asn Arg Ala Ala
595 600 605
Ala Tyr Ile Lys Leu Gly Ala Phe Asn Asp Ala Leu Lys Asp Ala Glu
610 615 620
Lys Cys Ile Glu Leu Lys Pro Asp Phe Val Lys Gly Tyr Ala Arg Lys
625 630 635 640
Gly His Ala Tyr Phe Trp Thr Lys Gln Tyr Asn Arg Ala Leu Gln Ala
645 650 655
Tyr Asn Glu Gly Leu Lys Val Asp Pro Ser Asn Ala Asp Cys Lys Asp
660 665 670
Gly Arg Tyr Arg Thr Ile Met Lys Ile Gln Glu Met Ala Ser Gly Gln
675 680 685
Ser Ala Asp Gly Asp Glu Ala Ala Arg Arg Ala Met Asp Asp Pro Glu
690 695 700
Ile Ala Ala Ile Met Gln Asp Ser Tyr Met Gln Leu Val Leu Lys Glu
705 710 715 720
Met Gln Asn Asp Pro Thr Arg Ile Gln Glu Tyr Met Lys Asp Ser Gly
725 730 735
Ile Ser Ser Lys Ile Asn Lys Leu Ile Ser Ala Gly Ile Ile Arg Phe
740 745 750
Gly Gln Glu Phe Met Ala Gln Asn Asp Lys Ile Ala Pro Gln Asp Gln
755 760 765
Asp Ser Phe Leu Asp Asp Gln Pro Gly Val Arg Pro Ile Pro Ser Phe
770 775 780
Asp Asp Met Pro Leu His Gln Asn Leu Leu Arg Gly Ile Tyr Ser Tyr
785 790 795 800
Gly Phe Glu Lys Pro Ser Ser Ile Gln Gln Arg Ala Ile Ala Pro Phe
805 810 815
Thr Arg Gly Gly Asp Ile Ile Ala Gln Ala Gln Ser Gly Thr Gly Lys
820 825 830
Thr Gly Ala Phe Ser Ile Gly Leu Leu Gln Arg Leu Asp Phe Arg His
835 840 845
Asn Leu Ile Gln Gly Leu Val Leu Ser Pro Thr Arg Glu Leu Ala Leu
850 855 860
Gln Thr Ala Glu Val Ile Ser Arg Ile Gly Glu Phe Leu Ser Asn Ser
865 870 875 880
Ser Lys Phe Cys Glu Thr Phe Val Gly Gly Thr Arg Val Gln Asp Asp
885 890 895
Leu Arg Lys Leu Gln Ala Gly Val Ile Val Ala Val Gly Thr Pro Gly
900 905 910
Arg Val Ser Asp Val Ile Lys Arg Gly Ala Leu Arg Thr Glu Ser Leu
915 920 925
Arg Val Leu Val Leu Asp Glu Ala Asp Glu Met Leu Ser Gln Gly Phe
930 935 940
Ala Asp Gln Ile Tyr Glu Ile Phe Arg Phe Leu Pro Lys Asp Ile Gln
945 950 955 960
Val Ala Leu Phe Ser Ala Thr Met Pro Glu Glu Val Leu Glu Leu Thr
965 970 975
Lys Lys Phe Met Arg Asp
980




96


1641


PRT


Artificial Sequence




Fusion (poly-protein) constructs comprising
multiple Leishmania antigens






96
Met His His His His His His Met Ser Cys Gly Asn Ala Lys Ile Asn
5 10 15
Ser Pro Ala Pro Ser Phe Glu Glu Val Ala Leu Met Pro Asn Gly Ser
20 25 30
Phe Lys Lys Ile Ser Leu Ser Ser Tyr Lys Gly Lys Trp Val Val Leu
35 40 45
Phe Phe Tyr Pro Leu Asp Phe Thr Phe Val Cys Pro Thr Glu Val Ile
50 55 60
Ala Phe Ser Asp Ser Val Ser Arg Phe Asn Glu Leu Asn Cys Glu Val
65 70 75 80
Leu Ala Cys Ser Ile Asp Ser Glu Tyr Ala His Leu Gln Trp Thr Leu
85 90 95
Gln Asp Arg Lys Lys Gly Gly Leu Gly Thr Met Ala Ile Pro Met Leu
100 105 110
Ala Asp Lys Thr Lys Ser Ile Ala Arg Ser Tyr Gly Val Leu Glu Glu
115 120 125
Ser Gln Gly Val Ala Tyr Arg Gly Leu Phe Ile Ile Asp Pro His Gly
130 135 140
Met Leu Arg Gln Ile Thr Val Asn Asp Met Pro Val Gly Arg Ser Val
145 150 155 160
Glu Glu Val Leu Arg Leu Leu Glu Ala Phe Gln Phe Val Glu Lys His
165 170 175
Gly Glu Val Cys Pro Ala Asn Trp Lys Lys Gly Ala Pro Thr Met Lys
180 185 190
Pro Glu Pro Asn Ala Ser Val Glu Gly Tyr Phe Ser Lys Gln Gly Ser
195 200 205
Met Asp Ala Thr Glu Leu Lys Asn Lys Gly Asn Glu Glu Phe Ser Ala
210 215 220
Gly Arg Tyr Val Glu Ala Val Asn Tyr Phe Ser Lys Ala Ile Gln Leu
225 230 235 240
Asp Glu Gln Asn Ser Val Leu Tyr Ser Asn Arg Ser Ala Cys Phe Ala
245 250 255
Ala Met Gln Lys Tyr Lys Asp Ala Leu Asp Asp Ala Asp Lys Cys Ile
260 265 270
Ser Ile Lys Pro Asn Trp Ala Lys Gly Tyr Val Arg Arg Gly Ala Ala
275 280 285
Leu His Gly Met Arg Arg Tyr Asp Asp Ala Ile Ala Ala Tyr Glu Lys
290 295 300
Gly Leu Lys Val Asp Pro Ser Asn Ser Gly Cys Ala Gln Gly Val Lys
305 310 315 320
Asp Val Gln Val Ala Lys Ala Arg Glu Ala Arg Asp Pro Ile Ala Arg
325 330 335
Val Phe Thr Pro Glu Ala Phe Arg Lys Ile Gln Glu Asn Pro Lys Leu
340 345 350
Ser Leu Leu Met Leu Gln Pro Asp Tyr Val Lys Met Val Asp Thr Val
355 360 365
Ile Arg Asp Pro Ser Gln Gly Arg Leu Tyr Met Glu Asp Gln Arg Phe
370 375 380
Ala Leu Thr Leu Met Tyr Leu Ser Gly Met Lys Ile Pro Asn Asp Gly
385 390 395 400
Asp Gly Glu Glu Glu Glu Arg Pro Ser Ala Lys Ala Ala Glu Thr Ala
405 410 415
Lys Pro Lys Glu Glu Lys Pro Leu Thr Asp Asn Glu Lys Glu Ala Leu
420 425 430
Ala Leu Lys Glu Glu Gly Asn Lys Leu Tyr Leu Ser Lys Lys Phe Glu
435 440 445
Glu Ala Leu Thr Lys Tyr Gln Glu Ala Gln Val Lys Asp Pro Asn Asn
450 455 460
Thr Leu Tyr Ile Leu Asn Val Ser Ala Val Tyr Phe Glu Gln Gly Asp
465 470 475 480
Tyr Asp Lys Cys Ile Ala Glu Cys Glu His Gly Ile Glu His Gly Arg
485 490 495
Glu Asn His Cys Asp Tyr Thr Ile Ile Ala Lys Leu Met Thr Arg Asn
500 505 510
Ala Leu Cys Leu Gln Arg Gln Arg Lys Tyr Glu Ala Ala Ile Asp Leu
515 520 525
Tyr Lys Arg Ala Leu Val Glu Trp Arg Asn Pro Asp Thr Leu Lys Lys
530 535 540
Leu Thr Glu Cys Glu Lys Glu His Gln Lys Ala Val Glu Glu Ala Tyr
545 550 555 560
Ile Asp Pro Glu Ile Ala Lys Gln Lys Lys Asp Glu Gly Asn Gln Tyr
565 570 575
Phe Lys Glu Asp Lys Phe Pro Glu Ala Val Ala Ala Tyr Thr Glu Ala
580 585 590
Ile Lys Arg Asn Pro Ala Glu His Thr Ser Tyr Ser Asn Arg Ala Ala
595 600 605
Ala Tyr Ile Lys Leu Gly Ala Phe Asn Asp Ala Leu Lys Asp Ala Glu
610 615 620
Lys Cys Ile Glu Leu Lys Pro Asp Phe Val Lys Gly Tyr Ala Arg Lys
625 630 635 640
Gly His Ala Tyr Phe Trp Thr Lys Gln Tyr Asn Arg Ala Leu Gln Ala
645 650 655
Tyr Asn Glu Gly Leu Lys Val Asp Pro Ser Asn Ala Asp Cys Lys Asp
660 665 670
Gly Arg Tyr Arg Thr Ile Met Lys Ile Gln Glu Met Ala Ser Gly Gln
675 680 685
Ser Ala Asp Gly Asp Glu Ala Ala Arg Arg Ala Met Asp Asp Pro Glu
690 695 700
Ile Ala Ala Ile Met Gln Asp Ser Tyr Met Gln Leu Val Leu Lys Glu
705 710 715 720
Met Gln Asn Asp Pro Thr Arg Ile Gln Glu Tyr Met Lys Asp Ser Gly
725 730 735
Ile Ser Ser Lys Ile Asn Lys Leu Ile Ser Ala Gly Ile Ile Arg Phe
740 745 750
Gly Gln Glu Phe Ser Leu Thr Asp Pro Ala Val Leu Gly Glu Glu Thr
755 760 765
His Leu Arg Val Arg Val Val Pro Asp Lys Ala Asn Lys Thr Leu Thr
770 775 780
Val Glu Asp Asn Gly Ile Gly Met Thr Lys Ala Asp Leu Val Asn Asn
785 790 795 800
Leu Gly Thr Ile Ala Arg Ser Gly Thr Lys Ala Phe Met Glu Ala Leu
805 810 815
Glu Ala Gly Gly Asp Met Ser Met Ile Gly Gln Phe Gly Val Gly Phe
820 825 830
Tyr Ser Ala Tyr Leu Val Ala Asp Arg Val Thr Val Val Ser Lys Asn
835 840 845
Asn Ser Asp Glu Ala Tyr Val Trp Glu Ser Ser Ala Gly Gly Thr Phe
850 855 860
Thr Ile Thr Ser Val Pro Glu Ser Asp Met Lys Arg Gly Thr Arg Ile
865 870 875 880
Thr Leu His Leu Lys Glu Asp Gln Gln Glu Tyr Leu Glu Glu Arg Arg
885 890 895
Val Lys Glu Leu Ile Lys Lys His Ser Glu Phe Ile Gly Tyr Asp Ile
900 905 910
Glu Leu Met Val Glu Lys Thr Ala Glu Lys Glu Val Thr Asp Glu Asp
915 920 925
Glu Glu Glu Asp Glu Ser Lys Lys Lys Ser Cys Gly Asp Glu Gly Glu
930 935 940
Pro Lys Val Glu Glu Val Thr Glu Gly Gly Glu Asp Lys Lys Lys Lys
945 950 955 960
Thr Lys Lys Val Lys Glu Val Thr Lys Thr Tyr Glu Val Gln Asn Lys
965 970 975
His Lys Pro Leu Trp Thr Arg Asp Pro Lys Asp Val Thr Lys Glu Glu
980 985 990
Tyr Ala Ala Phe Tyr Lys Ala Ile Ser Asn Asp Trp Glu Asp Pro Ala
995 1000 1005
Ala Thr Lys His Phe Ser Val Glu Gly Gln Leu Glu Phe Arg Ala Ile
1010 1015 1020
Ala Phe Val Pro Lys Arg Ala Pro Phe Asp Met Phe Glu Pro Asn Lys
1025 1030 1035 1040
Lys Arg Asn Asn Ile Lys Leu Tyr Val Arg Arg Val Phe Ile Met Asp
1045 1050 1055
Asn Cys Glu Asp Leu Cys Pro Asp Trp Leu Gly Phe Val Lys Gly Val
1060 1065 1070
Val Asp Ser Glu Asp Leu Pro Leu Asn Ile Ser Arg Glu Asn Leu Gln
1075 1080 1085
Gln Asn Lys Ile Leu Lys Val Ile Arg Lys Asn Ile Val Lys Lys Cys
1090 1095 1100
Leu Glu Leu Phe Glu Glu Ile Ala Glu Asn Lys Glu Asp Tyr Lys Gln
1105 1110 1115 1120
Phe Tyr Glu Gln Phe Gly Lys Asn Ile Lys Leu Gly Ile His Glu Asp
1125 1130 1135
Thr Ala Asn Arg Lys Lys Leu Met Glu Leu Leu Arg Phe Tyr Ser Thr
1140 1145 1150
Glu Ser Gly Glu Glu Met Thr Thr Leu Lys Asp Tyr Val Thr Arg Met
1155 1160 1165
Lys Pro Glu Gln Lys Ser Ile Tyr Tyr Ile Thr Gly Asp Ser Lys Lys
1170 1175 1180
Lys Leu Glu Ser Ser Pro Phe Ile Glu Lys Ala Arg Arg Cys Gly Leu
1185 1190 1195 1200
Glu Val Leu Phe Met Thr Glu Pro Ile Asp Glu Tyr Val Met Gln Gln
1205 1210 1215
Val Lys Asp Phe Glu Asp Lys Lys Phe Ala Cys Leu Thr Lys Glu Gly
1220 1225 1230
Val His Phe Glu Glu Ser Glu Glu Glu Lys Lys Gln Arg Glu Glu Lys
1235 1240 1245
Lys Ala Ala Cys Glu Lys Leu Cys Lys Thr Met Lys Glu Val Leu Gly
1250 1255 1260
Asp Lys Val Glu Lys Val Thr Val Ser Glu Arg Leu Ser Thr Ser Pro
1265 1270 1275 1280
Cys Ile Leu Val Thr Ser Glu Phe Gly Trp Ser Ala His Met Glu Gln
1285 1290 1295
Ile Met Arg Asn Gln Ala Leu Arg Asp Ser Ser Met Ala Gln Tyr Met
1300 1305 1310
Val Ser Lys Lys Thr Met Glu Val Asn Pro Asp His Pro Ile Ile Lys
1315 1320 1325
Glu Leu Arg Arg Arg Val Glu Ala Asp Glu Asn Asp Lys Ala Val Lys
1330 1335 1340
Asp Leu Val Phe Leu Leu Phe Asp Thr Ser Leu Leu Thr Ser Gly Phe
1345 1350 1355 1360
Gln Leu Asp Asp Pro Thr Gly Tyr Ala Glu Arg Ile Asn Arg Met Ile
1365 1370 1375
Lys Leu Gly Leu Ser Leu Asp Glu Glu Glu Glu Glu Val Ala Glu Ala
1380 1385 1390
Pro Pro Ala Glu Ala Ala Pro Ala Glu Val Thr Ala Gly Thr Ser Ser
1395 1400 1405
Met Glu Gln Val Asp Asp Ile Met Ala Gln Asn Asp Lys Ile Ala Pro
1410 1415 1420
Gln Asp Gln Asp Ser Phe Leu Asp Asp Gln Pro Gly Val Arg Pro Ile
1425 1430 1435 1440
Pro Ser Phe Asp Asp Met Pro Leu His Gln Asn Leu Leu Arg Gly Ile
1445 1450 1455
Tyr Ser Tyr Gly Phe Glu Lys Pro Ser Ser Ile Gln Gln Arg Ala Ile
1460 1465 1470
Ala Pro Phe Thr Arg Gly Gly Asp Ile Ile Ala Gln Ala Gln Ser Gly
1475 1480 1485
Thr Gly Lys Thr Gly Ala Phe Ser Ile Gly Leu Leu Gln Arg Leu Asp
1490 1495 1500
Phe Arg His Asn Leu Ile Gln Gly Leu Val Leu Ser Pro Thr Arg Glu
1505 1510 1515 1520
Leu Ala Leu Gln Thr Ala Glu Val Ile Ser Arg Ile Gly Glu Phe Leu
1525 1530 1535
Ser Asn Ser Ser Lys Phe Cys Glu Thr Phe Val Gly Gly Thr Arg Val
1540 1545 1550
Gln Asp Asp Leu Arg Lys Leu Gln Ala Gly Val Ile Val Ala Val Gly
1555 1560 1565
Thr Pro Gly Arg Val Ser Asp Val Ile Lys Arg Gly Ala Leu Arg Thr
1570 1575 1580
Glu Ser Leu Arg Val Leu Val Leu Asp Glu Ala Asp Glu Met Leu Ser
1585 1590 1595 1600
Gln Gly Phe Ala Asp Gln Ile Tyr Glu Ile Phe Arg Phe Leu Pro Lys
1605 1610 1615
Asp Ile Gln Val Ala Leu Phe Ser Ala Thr Met Pro Glu Glu Val Leu
1620 1625 1630
Glu Leu Thr Lys Lys Phe Met Arg Asp
1635 1640




97


1427


PRT


Artificial Sequence




Fusion (poly-protein) constructs comprising
multiple Leishmania antigens






97
Met His His His His His His Met Ser Cys Gly Asn Ala Lys Ile Asn
5 10 15
Ser Pro Ala Pro Ser Phe Glu Glu Val Ala Leu Met Pro Asn Gly Ser
20 25 30
Phe Lys Lys Ile Ser Leu Ser Ser Tyr Lys Gly Lys Trp Val Val Leu
35 40 45
Phe Phe Tyr Pro Leu Asp Phe Thr Phe Val Cys Pro Thr Glu Val Ile
50 55 60
Ala Phe Ser Asp Ser Val Ser Arg Phe Asn Glu Leu Asn Cys Glu Val
65 70 75 80
Leu Ala Cys Ser Ile Asp Ser Glu Tyr Ala His Leu Gln Trp Thr Leu
85 90 95
Gln Asp Arg Lys Lys Gly Gly Leu Gly Thr Met Ala Ile Pro Met Leu
100 105 110
Ala Asp Lys Thr Lys Ser Ile Ala Arg Ser Tyr Gly Val Leu Glu Glu
115 120 125
Ser Gln Gly Val Ala Tyr Arg Gly Leu Phe Ile Ile Asp Pro His Gly
130 135 140
Met Leu Arg Gln Ile Thr Val Asn Asp Met Pro Val Gly Arg Ser Val
145 150 155 160
Glu Glu Val Leu Arg Leu Leu Glu Ala Phe Gln Phe Val Glu Lys His
165 170 175
Gly Glu Val Cys Pro Ala Asn Trp Lys Lys Gly Ala Pro Thr Met Lys
180 185 190
Pro Glu Pro Asn Ala Ser Val Glu Gly Tyr Phe Ser Lys Gln Gly Ser
195 200 205
Met Asp Ala Thr Glu Leu Lys Asn Lys Gly Asn Glu Glu Phe Ser Ala
210 215 220
Gly Arg Tyr Val Glu Ala Val Asn Tyr Phe Ser Lys Ala Ile Gln Leu
225 230 235 240
Asp Glu Gln Asn Ser Val Leu Tyr Ser Asn Arg Ser Ala Cys Phe Ala
245 250 255
Ala Met Gln Lys Tyr Lys Asp Ala Leu Asp Asp Ala Asp Lys Cys Ile
260 265 270
Ser Ile Lys Pro Asn Trp Ala Lys Gly Tyr Val Arg Arg Gly Ala Ala
275 280 285
Leu His Gly Met Arg Arg Tyr Asp Asp Ala Ile Ala Ala Tyr Glu Lys
290 295 300
Gly Leu Lys Val Asp Pro Ser Asn Ser Gly Cys Ala Gln Gly Val Lys
305 310 315 320
Asp Val Gln Val Ala Lys Ala Arg Glu Ala Arg Asp Pro Ile Ala Arg
325 330 335
Val Phe Thr Pro Glu Ala Phe Arg Lys Ile Gln Glu Asn Pro Lys Leu
340 345 350
Ser Leu Leu Met Leu Gln Pro Asp Tyr Val Lys Met Val Asp Thr Val
355 360 365
Ile Arg Asp Pro Ser Gln Gly Arg Leu Tyr Met Glu Asp Gln Arg Phe
370 375 380
Ala Leu Thr Leu Met Tyr Leu Ser Gly Met Lys Ile Pro Asn Asp Gly
385 390 395 400
Asp Gly Glu Glu Glu Glu Arg Pro Ser Ala Lys Ala Ala Glu Thr Ala
405 410 415
Lys Pro Lys Glu Glu Lys Pro Leu Thr Asp Asn Glu Lys Glu Ala Leu
420 425 430
Ala Leu Lys Glu Glu Gly Asn Lys Leu Tyr Leu Ser Lys Lys Phe Glu
435 440 445
Glu Ala Leu Thr Lys Tyr Gln Glu Ala Gln Val Lys Asp Pro Asn Asn
450 455 460
Thr Leu Tyr Ile Leu Asn Val Ser Ala Val Tyr Phe Glu Gln Gly Asp
465 470 475 480
Tyr Asp Lys Cys Ile Ala Glu Cys Glu His Gly Ile Glu His Gly Arg
485 490 495
Glu Asn His Cys Asp Tyr Thr Ile Ile Ala Lys Leu Met Thr Arg Asn
500 505 510
Ala Leu Cys Leu Gln Arg Gln Arg Lys Tyr Glu Ala Ala Ile Asp Leu
515 520 525
Tyr Lys Arg Ala Leu Val Glu Trp Arg Asn Pro Asp Thr Leu Lys Lys
530 535 540
Leu Thr Glu Cys Glu Lys Glu His Gln Lys Ala Val Glu Glu Ala Tyr
545 550 555 560
Ile Asp Pro Glu Ile Ala Lys Gln Lys Lys Asp Glu Gly Asn Gln Tyr
565 570 575
Phe Lys Glu Asp Lys Phe Pro Glu Ala Val Ala Ala Tyr Thr Glu Ala
580 585 590
Ile Lys Arg Asn Pro Ala Glu His Thr Ser Tyr Ser Asn Arg Ala Ala
595 600 605
Ala Tyr Ile Lys Leu Gly Ala Phe Asn Asp Ala Leu Lys Asp Ala Glu
610 615 620
Lys Cys Ile Glu Leu Lys Pro Asp Phe Val Lys Gly Tyr Ala Arg Lys
625 630 635 640
Gly His Ala Tyr Phe Trp Thr Lys Gln Tyr Asn Arg Ala Leu Gln Ala
645 650 655
Tyr Asn Glu Gly Leu Lys Val Asp Pro Ser Asn Ala Asp Cys Lys Asp
660 665 670
Gly Arg Tyr Arg Thr Ile Met Lys Ile Gln Glu Met Ala Ser Gly Gln
675 680 685
Ser Ala Asp Gly Asp Glu Ala Ala Arg Arg Ala Met Asp Asp Pro Glu
690 695 700
Ile Ala Ala Ile Met Gln Asp Ser Tyr Met Gln Leu Val Leu Lys Glu
705 710 715 720
Met Gln Asn Asp Pro Thr Arg Ile Gln Glu Tyr Met Lys Asp Ser Gly
725 730 735
Ile Ser Ser Lys Ile Asn Lys Leu Ile Ser Ala Gly Ile Ile Arg Phe
740 745 750
Gly Gln Glu Phe Ser Leu Thr Asp Pro Ala Val Leu Gly Glu Glu Thr
755 760 765
His Leu Arg Val Arg Val Val Pro Asp Lys Ala Asn Lys Thr Leu Thr
770 775 780
Val Glu Asp Asn Gly Ile Gly Met Thr Lys Ala Asp Leu Val Asn Asn
785 790 795 800
Leu Gly Thr Ile Ala Arg Ser Gly Thr Lys Ala Phe Met Glu Ala Leu
805 810 815
Glu Ala Gly Gly Asp Met Ser Met Ile Gly Gln Phe Gly Val Gly Phe
820 825 830
Tyr Ser Ala Tyr Leu Val Ala Asp Arg Val Thr Val Val Ser Lys Asn
835 840 845
Asn Ser Asp Glu Ala Tyr Val Trp Glu Ser Ser Ala Gly Gly Thr Phe
850 855 860
Thr Ile Thr Ser Val Pro Glu Ser Asp Met Lys Arg Gly Thr Arg Ile
865 870 875 880
Thr Leu His Leu Lys Glu Asp Gln Gln Glu Tyr Leu Glu Glu Arg Arg
885 890 895
Val Lys Glu Leu Ile Lys Lys His Ser Glu Phe Ile Gly Tyr Asp Ile
900 905 910
Glu Leu Met Val Glu Lys Thr Ala Glu Lys Glu Val Thr Asp Glu Asp
915 920 925
Glu Glu Glu Asp Glu Ser Lys Lys Lys Ser Cys Gly Asp Glu Gly Glu
930 935 940
Pro Lys Val Glu Glu Val Thr Glu Gly Gly Glu Asp Lys Lys Lys Lys
945 950 955 960
Thr Lys Lys Val Lys Glu Val Thr Lys Thr Tyr Glu Val Gln Asn Lys
965 970 975
His Lys Pro Leu Trp Thr Arg Asp Pro Lys Asp Val Thr Lys Glu Glu
980 985 990
Tyr Ala Ala Phe Tyr Lys Ala Ile Ser Asn Asp Trp Glu Asp Pro Ala
995 1000 1005
Ala Thr Lys His Phe Ser Val Glu Gly Gln Leu Glu Phe Arg Ala Ile
1010 1015 1020
Ala Phe Val Pro Lys Arg Ala Pro Phe Asp Met Phe Glu Pro Asn Lys
1025 1030 1035 1040
Lys Arg Asn Asn Ile Lys Leu Tyr Val Arg Arg Val Phe Ile Met Asp
1045 1050 1055
Asn Cys Glu Asp Leu Cys Pro Asp Trp Leu Gly Phe Val Lys Gly Val
1060 1065 1070
Val Asp Ser Glu Asp Leu Pro Leu Asn Ile Ser Arg Glu Asn Leu Gln
1075 1080 1085
Gln Asn Lys Ile Leu Lys Val Ile Arg Lys Asn Ile Val Lys Lys Cys
1090 1095 1100
Leu Glu Leu Phe Glu Glu Ile Ala Glu Asn Lys Glu Asp Tyr Lys Gln
1105 1110 1115 1120
Phe Tyr Glu Gln Phe Gly Lys Asn Ile Lys Leu Gly Ile His Glu Asp
1125 1130 1135
Thr Ala Asn Arg Lys Lys Leu Met Glu Leu Leu Arg Phe Tyr Ser Thr
1140 1145 1150
Glu Ser Gly Glu Glu Met Thr Thr Leu Lys Asp Tyr Val Thr Arg Met
1155 1160 1165
Lys Pro Glu Gln Lys Ser Ile Tyr Tyr Ile Thr Gly Asp Ser Lys Lys
1170 1175 1180
Lys Leu Glu Ser Ser Pro Phe Ile Glu Lys Ala Arg Arg Cys Gly Leu
1185 1190 1195 1200
Glu Val Leu Phe Met Thr Glu Pro Ile Asp Glu Tyr Val Met Gln Gln
1205 1210 1215
Val Lys Asp Phe Glu Asp Lys Lys Phe Ala Cys Leu Thr Lys Glu Gly
1220 1225 1230
Val His Phe Glu Glu Ser Glu Glu Glu Lys Lys Gln Arg Glu Glu Lys
1235 1240 1245
Lys Ala Ala Cys Glu Lys Leu Cys Lys Thr Met Lys Glu Val Leu Gly
1250 1255 1260
Asp Lys Val Glu Lys Val Thr Val Ser Glu Arg Leu Ser Thr Ser Pro
1265 1270 1275 1280
Cys Ile Leu Val Thr Ser Glu Phe Gly Trp Ser Ala His Met Glu Gln
1285 1290 1295
Ile Met Arg Asn Gln Ala Leu Arg Asp Ser Ser Met Ala Gln Tyr Met
1300 1305 1310
Val Ser Lys Lys Thr Met Glu Val Asn Pro Asp His Pro Ile Ile Lys
1315 1320 1325
Glu Leu Arg Arg Arg Val Glu Ala Asp Glu Asn Asp Lys Ala Val Lys
1330 1335 1340
Asp Leu Val Phe Leu Leu Phe Asp Thr Ser Leu Leu Thr Ser Gly Phe
1345 1350 1355 1360
Gln Leu Asp Asp Pro Thr Gly Tyr Ala Glu Arg Ile Asn Arg Met Ile
1365 1370 1375
Lys Leu Gly Leu Ser Leu Asp Glu Glu Glu Glu Glu Val Ala Glu Ala
1380 1385 1390
Pro Pro Ala Glu Ala Ala Pro Ala Glu Val Thr Ala Gly Thr Ser Ser
1395 1400 1405
Met Glu Gln Val Asp Asp Ile His His Thr Gly Gly Arg Ser Ser Arg
1410 1415 1420
Ser Gly Cys
1425




98


4929


DNA


Artificial Sequence




DNA sequence encoding fusion (poly-protein)
constructs comprising multiple Leishmania antigens






98
catatgcacc accaccacca ccacatgtcc tgcggtaacg ccaagatcaa ctctcccgcg 60
ccgtccttcg aggaggtggc gctcatgccc aacggcagct tcaagaagat cagcctctcc 120
tcctacaagg gcaagtgggt cgtgctcttc ttctacccgc tcgacttcac cttcgtgtgc 180
ccgacagagg tcatcgcgtt ctccgacagc gtgagtcgct tcaacgagct caactgcgag 240
gtcctcgcgt gctcgataga cagcgagtac gcgcacctgc agtggacgct gcaggaccgc 300
aagaagggcg gcctcgggac catggcgatc ccaatgctag ccgacaagac caagagcatc 360
gctcgttcct acggcgtgct ggaggagagc cagggcgtgg cctaccgcgg tctcttcatc 420
atcgaccccc atggcatgct gcgtcagatc accgtcaatg acatgccggt gggccgcagc 480
gtggaggagg ttctacgcct gctggaggct tttcagttcg tggagaagca cggcgaggtg 540
tgccccgcga actggaagaa gggcgccccc acgatgaagc cggaaccgaa tgcgtctgtc 600
gagggatact tcagcaagca gggatccatg gacgcaactg agctgaagaa caaggggaac 660
gaagagttct ccgccggccg ctatgtggag gcggtgaact acttctcaaa ggcgatccag 720
ttggatgagc agaacagtgt cctctacagc aaccgctccg cctgttttgc agccatgcag 780
aaatacaagg acgcgctgga cgacgccgac aagtgcatct cgatcaagcc gaattgggcc 840
aagggctacg tgcgccgagg agcagctctc catggcatgc gccgctacga cgatgccatt 900
gccgcgtatg aaaaggggct caaggtggac ccttccaaca gcggctgcgc gcagggcgtg 960
aaggacgtgc aggtagccaa ggcccgcgaa gcacgtgacc ccatcgctcg cgtcttcacc 1020
ccggaggcgt tccgcaagat ccaagagaat cccaagctgt ctctacttat gctgcagccg 1080
gactacgtga agatggtaga caccgtcatc cgcgaccctt cgcagggccg gctgtacatg 1140
gaagaccagc gctttgccct gacgctcatg tacctgagcg gaatgaagat tcccaacgat 1200
ggtgatggcg aggaggagga acgtccgtct gcgaaggcgg cagagacagc gaagccaaaa 1260
gaggagaagc ctctcaccga caacgagaag gaggccctgg cgctcaagga ggagggcaac 1320
aagctgtacc tctcgaagaa gtttgaggag gcgctgacca agtaccaaga ggcgcaggtg 1380
aaagacccca acaacacttt atacattctg aacgtgtcgg ccgtgtactt cgagcagggt 1440
gactacgaca agtgcatcgc cgagtgcgag cacggtatcg agcacggtcg cgagaaccac 1500
tgcgactaca caatcattgc gaagctcatg acccggaacg ccttgtgcct ccagaggcag 1560
aggaagtacg aggctgctat cgacctttac aagcgcgccc ttgtcgagtg gcgtaaccct 1620
gacaccctca agaagctgac ggagtgcgag aaggagcacc aaaaggcggt ggaggaagcc 1680
tacatcgatc ctgagatcgc gaagcagaag aaagacgaag gtaaccagta cttcaaggag 1740
gataagttcc ccgaggccgt ggcagcgtac acggaggcca tcaagcgcaa ccctgccgag 1800
cacacctcct acagcaatcg cgcggccgcg tacatcaagc ttggagcctt caacgacgcc 1860
ctcaaggacg cggagaagtg cattgagctg aagcccgact ttgttaaggg ctacgcgcgc 1920
aagggtcatg cttacttttg gaccaagcag tacaaccgcg cgctgcaggc gtacaatgag 1980
ggcctcaagg tggacccgag caatgcggac tgcaaggatg ggcggtatcg cacaatcatg 2040
aagattcagg agatggcatc tggccaatcc gcggatggcg acgaggcggc gcgccgggcc 2100
atggacgatc ctgaaatcgc ggcaatcatg caagatagct acatgcaact agtgttgaag 2160
gagatgcaga acgatcccac gcgcattcag gagtacatga aggactccgg gatctcatcg 2220
aagatcaaca agctgatttc agctggcatc attcgttttg gtcaggaatt cagcctgacg 2280
gacccggcgg tgctgggcga ggagactcac ctgcgcgtcc gcgtggtgcc ggacaaggcg 2340
aacaagacgc tgacggtgga ggataacggc atcggcatga ccaaggcgga cctcgtgaac 2400
aatctgggca cgatcgcgcg ctccggcacg aaggcgttca tggaggcact ggaggccggc 2460
ggcgacatga gcatgatcgg ccagttcggt gtcggcttct actccgcgta ccttgtggcg 2520
gaccgcgtga cggtggtgtc gaagaacaac tcggacgagg cgtacgtatg ggagtcgtcc 2580
gcgggcggca cgttcaccat cacgagcgtg ccggagtcgg acatgaagcg cggcacgcgc 2640
atcacgctgc acctaaagga ggaccagcag gagtacctgg aggagcgccg ggtgaaggag 2700
ctgatcaaga agcactccga gttcatcggc tacgacatcg agctgatggt ggagaagacg 2760
gcggagaagg aggtgacgga cgaggacgag gaggaggacg agtcgaagaa gaagtcctgc 2820
ggggacgagg gcgagccgaa ggtggaggag gtgacggagg gcggcgagga caagaagaag 2880
aagacgaaga aggtgaagga ggtgacgaag acgtacgagg tccagaacaa gcacaagccg 2940
ctctggacgc gcgacccgaa ggacgtgacg aaggaggagt acgcggcctt ctacaaggcc 3000
atctccaacg actgggagga cccggcggcg acgaagcact tctcggtgga gggccagctg 3060
gagttccgcg cgatcgcgtt cgtgccgaag cgcgcgccgt tcgacatgtt cgagccgaac 3120
aagaagcgca acaacatcaa gctgtacgtg cgccgcgtgt tcatcatgga caactgcgag 3180
gacctgtgcc cggactggct cggcttcgtg aagggcgtcg tggacagcga ggacctgccg 3240
ctgaacatct cgcgcgagaa cctgcagcag aacaagatcc tgaaggtgat ccgcaagaac 3300
atcgtgaaga agtgcctgga gctgttcgaa gagatagcgg agaacaagga ggactacaag 3360
cagttctacg agcagttcgg caagaacatc aagctgggca tccacgagga cacggcgaac 3420
cgcaagaagc tgatggagtt gctgcgcttc tacagcaccg agtcggggga ggagatgacg 3480
acactgaagg actacgtgac gcgcatgaag ccggagcaga agtcgatcta ctacatcact 3540
ggcgacagca agaagaagct ggagtcgtcg ccgttcatcg agaaggcgag acgctgcggg 3600
ctcgaggtgc tgttcatgac ggagccgatc gacgagtacg tgatgcagca ggtgaaggac 3660
ttcgaggaca agaagttcgc gtgcctgacg aaggaaggcg tgcacttcga ggagtccgag 3720
gaggagaaga agcagcgcga ggagaagaag gcggcgtgcg agaagctgtg caagacgatg 3780
aaggaggtgc tgggcgacaa ggtggagaag gtgaccgtgt cggagcgcct gtcgacgtcg 3840
ccgtgcatcc tggtgacgtc ggagtttggg tggtcggcgc acatggaaca gatcatgcgc 3900
aaccaggcgc tgcgcgactc cagcatggcg cagtacatgg tgtccaagaa gacgatggag 3960
gtgaaccccg accaccccat catcaaggag ctgcgccgcc gcgtggaggc ggacgagaac 4020
gacaaggccg tgaaggacct cgtcttcctg ctcttcgaca cgtcgctgct cacgtccggc 4080
ttccagctgg atgaccccac cggctacgcc gagcgcatca accgcatgat caagctcggc 4140
ctgtcgctcg acgaggagga ggaggaggtc gccgaggcgc cgccggccga ggcagccccc 4200
gcggaggtca ccgccggcac ctccagcatg gagcaggtgg acgatatcat ggcgcagaat 4260
gataagatcg ccccccagga ccaggactcc ttcctcgatg accagcccgg cgttcgcccg 4320
atcccgtcct tcgacgacat gccgctgcac cagaacctgc tgcgtggcat ctactcgtac 4380
gggttcgaga agccgtccag catccagcag cgcgcgatag cccccttcac gcgcggcggc 4440
gacatcatcg cgcaggccca gtccggtacc ggcaagacgg gtgccttctc catcggtctg 4500
ctgcagcgcc tggacttccg ccacaacctg atccagggcc tcgtgctctc ccccactcgc 4560
gagctggccc tgcagacggc ggaggtgatc agccgcatcg gtgagttcct gtcgaacagc 4620
tccaagttct gcgagacctt tgtcggcggc acgcgcgtgc aggatgacct gcgcaagctg 4680
caggccggcg tcatcgttgc cgtgggcacg ccgggccgcg tgtccgacgt gatcaagcgt 4740
ggcgcgctgc gcacagagtc gctgcgcgtg ctggtgctcg acgaggctga tgagatgctg 4800
tctcagggct tcgcggacca gatttacgag atcttccgct tcctgccgaa ggacatccag 4860
gtcgcgctct tctccgccac gatgccggag gaggtactgg agctgacgaa gaagttcatg 4920
cgcgactaa 4929




99


4233


DNA


Artificial Sequence




DNA sequence encoding fusion (poly-protein)
constructs comprising multiple Leishmania antigens






99
ccagtgtggt ggatgtcctg cggtaacgcc aagatcaact ctcccgcgcc gtccttcgag 60
gaggtggcgc tcatgcccaa cggcagcttc aagaagatca gcctctcctc ctacaagggc 120
aagtgggtcg tgctcttctt ctacccgctc gacttcacct tcgtgtgccc gacagaggtc 180
atcgcgttct ccgacagcgt gagtcgcttc aacgagctca actgcgaggt cctcgcgtgc 240
tcgatagaca gcgagtacgc gcacctgcag tggacgctgc aggaccgcaa gaagggcggc 300
ctcgggacca tggcgatccc aatgctagcc gacaagacca agagcatcgc tcgttcctac 360
ggcgtgctgg aggagagcca gggcgtggcc taccgcggtc tcttcatcat cgacccccat 420
ggcatgctgc gtcagatcac cgtcaatgac atgccggtgg gccgcagcgt ggaggaggtt 480
ctacgcctgc tggaggcttt tcagttcgtg gagaagcacg gcgaggtgtg ccccgcgaac 540
tggaagaagg gcgcccccac gatgaagccg gaaccgaatg cgtctgtcga gggatacttc 600
agcaagcagg gatccatgga cgcaactgag ctgaagaaca aggggaacga agagttctcc 660
gccggccgct atgtggaggc ggtgaactac ttctcaaagg cgatccagtt ggatgagcag 720
aacagtgtcc tctacagcaa ccgctccgcc tgttttgcag ccatgcagaa atacaaggac 780
gcgctggacg acgccgacaa gtgcatctcg atcaagccga attgggccaa gggctacgtg 840
cgccgaggag cagctctcca tggcatgcgc cgctacgacg atgccattgc cgcgtatgaa 900
aaggggctca aggtggaccc ttccaacagc ggctgcgcgc agggcgtgaa ggacgtgcag 960
gtagccaagg cccgcgaagc acgtgacccc atcgctcgcg tcttcacccc ggaggcgttc 1020
cgcaagatcc aagagaatcc caagctgtct ctacttatgc tgcagccgga ctacgtgaag 1080
atggtagaca ccgtcatccg cgacccttcg cagggccggc tgtacatgga agaccagcgc 1140
tttgccctga cgctcatgta cctgagcgga atgaagattc ccaacgatgg tgatggcgag 1200
gaggaggaac gtccgtctgc gaaggcggca gagacagcga agccaaaaga ggagaagcct 1260
ctcaccgaca acgagaagga ggccctggcg ctcaaggagg agggcaacaa gctgtacctc 1320
tcgaagaagt ttgaggaggc gctgaccaag taccaagagg cgcaggtgaa agaccccaac 1380
aacactttat acattctgaa cgtgtcggcc gtgtacttcg agcagggtga ctacgacaag 1440
tgcatcgccg agtgcgagca cggtatcgag cacggtcgcg agaaccactg cgactacaca 1500
atcattgcga agctcatgac ccggaacgcc ttgtgcctcc agaggcagag gaagtacgag 1560
gctgctatcg acctttacaa gcgcgccctt gtcgagtggc gtaaccctga caccctcaag 1620
aagctgacgg agtgcgagaa ggagcaccaa aaggcggtgg aggaagccta catcgatcct 1680
gagatcgcga agcagaagaa agacgaaggt aaccagtact tcaaggagga taagttcccc 1740
gaggccgtgg cagcgtacac ggaggccatc aagcgcaacc ctgccgagca cacctcctac 1800
agcaatcgcg cggccgcgta catcaagctt ggagccttca acgacgccct caaggacgcg 1860
gagaagtgca ttgagctgaa gcccgacttt gttaagggct acgcgcgcaa gggtcatgct 1920
tacttttgga ccaagcagta caaccgcgcg ctgcaggcgt acaatgaggg cctcaaggtg 1980
gacccgagca atgcggactg caaggatggg cggtatcgca caatcatgaa gattcaggag 2040
atggcatctg gccaatccgc ggatggcgac gaggcggcgc gccgggccat ggacgatcct 2100
gaaatcgcgg caatcatgca agatagctac atgcaactag tgttgaagga gatgcagaac 2160
gatcccacgc gcattcagga gtacatgaag gactccggga tctcatcgaa gatcaacaag 2220
ctgatttcag ctggcatcat tcgttttggt caggaattca gcctgacgga cccggcggtg 2280
ctgggcgagg agactcacct gcgcgtccgc gtggtgccgg acaaggcgaa caagacgctg 2340
acggtggagg ataacggcat cggcatgacc aaggcggacc tcgtgaacaa tctgggcacg 2400
atcgcgcgct ccggcacgaa ggcgttcatg gaggcactgg aggccggcgg cgacatgagc 2460
atgatcggcc agttcggtgt cggcttctac tccgcgtacc ttgtggcgga ccgcgtgacg 2520
gtggtgtcga agaacaactc ggacgaggcg tacgtatggg agtcgtccgc gggcggcacg 2580
ttcaccatca cgagcgtgcc ggagtcggac atgaagcgcg gcacgcgcat cacgctgcac 2640
ctaaaggagg accagcagga gtacctggag gagcgccggg tgaaggagct gatcaagaag 2700
cactccgagt tcatcggcta cgacatcgag ctgatggtgg agaagacggc ggagaaggag 2760
gtgacggacg aggacgagga ggaggacgag tcgaagaaga agtcctgcgg ggacgagggc 2820
gagccgaagg tggaggaggt gacggagggc ggcgaggaca agaagaagaa gacgaagaag 2880
gtgaaggagg tgacgaagac gtacgaggtc cagaacaagc acaagccgct ctggacgcgc 2940
gacccgaagg acgtgacgaa ggaggagtac gcggccttct acaaggccat ctccaacgac 3000
tgggaggacc cggcggcgac gaagcacttc tcggtggagg gccagctgga gttccgcgcg 3060
atcgcgttcg tgccgaagcg cgcgccgttc gacatgttcg agccgaacaa gaagcgcaac 3120
aacatcaagc tgtacgtgcg ccgcgtgttc atcatggaca actgcgagga cctgtgcccg 3180
gactggctcg gcttcgtgaa gggcgtcgtg gacagcgagg acctgccgct gaacatctcg 3240
cgcgagaacc tgcagcagaa caagatcctg aaggtgatcc gcaagaacat cgtgaagaag 3300
tgcctggagc tgttcgaaga gatagcggag aacaaggagg actacaagca gttctacgag 3360
cagttcggca agaacatcaa gctgggcatc cacgaggaca cggcgaaccg caagaagctg 3420
atggagttgc tgcgcttcta cagcaccgag tcgggggagg agatgacgac actgaaggac 3480
tacgtgacgc gcatgaagcc ggagcagaag tcgatctact acatcactgg cgacagcaag 3540
aagaagctgg agtcgtcgcc gttcatcgag aaggcgagac gctgcgggct cgaggtgctg 3600
ttcatgacgg agccgatcga cgagtacgtg atgcagcagg tgaaggactt cgaggacaag 3660
aagttcgcgt gcctgacgaa ggaaggcgtg cacttcgagg agtccgagga ggagaagaag 3720
cagcgcgagg agaagaaggc ggcgtgcgag aagctgtgca agacgatgaa ggaggtgctg 3780
ggcgacaagg tggagaaggt gaccgtgtcg gagcgcctgt cgacgtcgcc gtgcatcctg 3840
gtgacgtcgg agtttgggtg gtcggcgcac atggaacaga tcatgcgcaa ccaggcgctg 3900
cgcgactcca gcatggcgca gtacatggtg tccaagaaga cgatggaggt gaaccccgac 3960
caccccatca tcaaggagct gcgccgccgc gtggaggcgg acgagaacga caaggccgtg 4020
aaggacctcg tcttcctgct cttcgacacg tcgctgctca cgtccggctt ccagctggat 4080
gaccccaccg gctacgccga gcgcatcaac cgcatgatca agctcggcct gtcgctcgac 4140
gaggaggagg aggaggtcgc cgaggcgccg ccggccgagg cagcccccgc ggaggtcacc 4200
gccggcacct ccagcatgga gcaggtggac taa 4233




100


4917


DNA


Artificial Sequence




DNA sequence encoding fusion (poly-protein)
constructs comprising multiple Leishmania antigens






100
ccagtgtggt ggatgtcctg cggtaacgcc aagatcaact ctcccgcgcc gtccttcgag 60
gaggtggcgc tcatgcccaa cggcagcttc aagaagatca gcctctcctc ctacaagggc 120
aagtgggtcg tgctcttctt ctacccgctc gacttcacct tcgtgtgccc gacagaggtc 180
atcgcgttct ccgacagcgt gagtcgcttc aacgagctca actgcgaggt cctcgcgtgc 240
tcgatagaca gcgagtacgc gcacctgcag tggacgctgc aggaccgcaa gaagggcggc 300
ctcgggacca tggcgatccc aatgctagcc gacaagacca agagcatcgc tcgttcctac 360
ggcgtgctgg aggagagcca gggcgtggcc taccgcggtc tcttcatcat cgacccccat 420
ggcatgctgc gtcagatcac cgtcaatgac atgccggtgg gccgcagcgt ggaggaggtt 480
ctacgcctgc tggaggcttt tcagttcgtg gagaagcacg gcgaggtgtg ccccgcgaac 540
tggaagaagg gcgcccccac gatgaagccg gaaccgaatg cgtctgtcga gggatacttc 600
agcaagcagg gatccatgga cgcaactgag ctgaagaaca aggggaacga agagttctcc 660
gccggccgct atgtggaggc ggtgaactac ttctcaaagg cgatccagtt ggatgagcag 720
aacagtgtcc tctacagcaa ccgctccgcc tgttttgcag ccatgcagaa atacaaggac 780
gcgctggacg acgccgacaa gtgcatctcg atcaagccga attgggccaa gggctacgtg 840
cgccgaggag cagctctcca tggcatgcgc cgctacgacg atgccattgc cgcgtatgaa 900
aaggggctca aggtggaccc ttccaacagc ggctgcgcgc agggcgtgaa ggacgtgcag 960
gtagccaagg cccgcgaagc acgtgacccc atcgctcgcg tcttcacccc ggaggcgttc 1020
cgcaagatcc aagagaatcc caagctgtct ctacttatgc tgcagccgga ctacgtgaag 1080
atggtagaca ccgtcatccg cgacccttcg cagggccggc tgtacatgga agaccagcgc 1140
tttgccctga cgctcatgta cctgagcgga atgaagattc ccaacgatgg tgatggcgag 1200
gaggaggaac gtccgtctgc gaaggcggca gagacagcga agccaaaaga ggagaagcct 1260
ctcaccgaca acgagaagga ggccctggcg ctcaaggagg agggcaacaa gctgtacctc 1320
tcgaagaagt ttgaggaggc gctgaccaag taccaagagg cgcaggtgaa agaccccaac 1380
aacactttat acattctgaa cgtgtcggcc gtgtacttcg agcagggtga ctacgacaag 1440
tgcatcgccg agtgcgagca cggtatcgag cacggtcgcg agaaccactg cgactacaca 1500
atcattgcga agctcatgac ccggaacgcc ttgtgcctcc agaggcagag gaagtacgag 1560
gctgctatcg acctttacaa gcgcgccctt gtcgagtggc gtaaccctga caccctcaag 1620
aagctgacgg agtgcgagaa ggagcaccaa aaggcggtgg aggaagccta catcgatcct 1680
gagatcgcga agcagaagaa agacgaaggt aaccagtact tcaaggagga taagttcccc 1740
gaggccgtgg cagcgtacac ggaggccatc aagcgcaacc ctgccgagca cacctcctac 1800
agcaatcgcg cggccgcgta catcaagctt ggagccttca acgacgccct caaggacgcg 1860
gagaagtgca ttgagctgaa gcccgacttt gttaagggct acgcgcgcaa gggtcatgct 1920
tacttttgga ccaagcagta caaccgcgcg ctgcaggcgt acaatgaggg cctcaaggtg 1980
gacccgagca atgcggactg caaggatggg cggtatcgca caatcatgaa gattcaggag 2040
atggcatctg gccaatccgc ggatggcgac gaggcggcgc gccgggccat ggacgatcct 2100
gaaatcgcgg caatcatgca agatagctac atgcaactag tgttgaagga gatgcagaac 2160
gatcccacgc gcattcagga gtacatgaag gactccggga tctcatcgaa gatcaacaag 2220
ctgatttcag ctggcatcat tcgttttggt caggaattca gcctgacgga cccggcggtg 2280
ctgggcgagg agactcacct gcgcgtccgc gtggtgccgg acaaggcgaa caagacgctg 2340
acggtggagg ataacggcat cggcatgacc aaggcggacc tcgtgaacaa tctgggcacg 2400
atcgcgcgct ccggcacgaa ggcgttcatg gaggcactgg aggccggcgg cgacatgagc 2460
atgatcggcc agttcggtgt cggcttctac tccgcgtacc ttgtggcgga ccgcgtgacg 2520
gtggtgtcga agaacaactc ggacgaggcg tacgtatggg agtcgtccgc gggcggcacg 2580
ttcaccatca cgagcgtgcc ggagtcggac atgaagcgcg gcacgcgcat cacgctgcac 2640
ctaaaggagg accagcagga gtacctggag gagcgccggg tgaaggagct gatcaagaag 2700
cactccgagt tcatcggcta cgacatcgag ctgatggtgg agaagacggc ggagaaggag 2760
gtgacggacg aggacgagga ggaggacgag tcgaagaaga agtcctgcgg ggacgagggc 2820
gagccgaagg tggaggaggt gacggagggc ggcgaggaca agaagaagaa gacgaagaag 2880
gtgaaggagg tgacgaagac gtacgaggtc cagaacaagc acaagccgct ctggacgcgc 2940
gacccgaagg acgtgacgaa ggaggagtac gcggccttct acaaggccat ctccaacgac 3000
tgggaggacc cggcggcgac gaagcacttc tcggtggagg gccagctgga gttccgcgcg 3060
atcgcgttcg tgccgaagcg cgcgccgttc gacatgttcg agccgaacaa gaagcgcaac 3120
aacatcaagc tgtacgtgcg ccgcgtgttc atcatggaca actgcgagga cctgtgcccg 3180
gactggctcg gcttcgtgaa gggcgtcgtg gacagcgagg acctgccgct gaacatctcg 3240
cgcgagaacc tgcagcagaa caagatcctg aaggtgatcc gcaagaacat cgtgaagaag 3300
tgcctggagc tgttcgaaga gatagcggag aacaaggagg actacaagca gttctacgag 3360
cagttcggca agaacatcaa gctgggcatc cacgaggaca cggcgaaccg caagaagctg 3420
atggagttgc tgcgcttcta cagcaccgag tcgggggagg agatgacgac actgaaggac 3480
tacgtgacgc gcatgaagcc ggagcagaag tcgatctact acatcactgg cgacagcaag 3540
aagaagctgg agtcgtcgcc gttcatcgag aaggcgagac gctgcgggct cgaggtgctg 3600
ttcatgacgg agccgatcga cgagtacgtg atgcagcagg tgaaggactt cgaggacaag 3660
aagttcgcgt gcctgacgaa ggaaggcgtg cacttcgagg agtccgagga ggagaagaag 3720
cagcgcgagg agaagaaggc ggcgtgcgag aagctgtgca agacgatgaa ggaggtgctg 3780
ggcgacaagg tggagaaggt gaccgtgtcg gagcgcctgt cgacgtcgcc gtgcatcctg 3840
gtgacgtcgg agtttgggtg gtcggcgcac atggaacaga tcatgcgcaa ccaggcgctg 3900
cgcgactcca gcatggcgca gtacatggtg tccaagaaga cgatggaggt gaaccccgac 3960
caccccatca tcaaggagct gcgccgccgc gtggaggcgg acgagaacga caaggccgtg 4020
aaggacctcg tcttcctgct cttcgacacg tcgctgctca cgtccggctt ccagctggat 4080
gaccccaccg gctacgccga gcgcatcaac cgcatgatca agctcggcct gtcgctcgac 4140
gaggaggagg aggaggtcgc cgaggcgccg ccggccgagg cagcccccgc ggaggtcacc 4200
gccggcacct ccagcatgga gcaggtggac gatatcatgg cgcagaatga taagatcgcc 4260
ccccaggacc aggactcctt cctcgatgac cagcccggcg ttcgcccgat cccgtccttc 4320
gacgacatgc cgctgcacca gaacctgctg cgtggcatct actcgtacgg gttcgagaag 4380
ccgtccagca tccagcagcg cgcgatagcc cccttcacgc gcggcggcga catcatcgcg 4440
caggcccagt ccggtaccgg caagacgggt gccttctcca tcggtctgct gcagcgcctg 4500
gacttccgcc acaacctgat ccagggcctc gtgctctccc ccactcgcga gctggccctg 4560
cagacggcgg aggtgatcag ccgcatcggt gagttcctgt cgaacagctc caagttctgc 4620
gagacctttg tcggcggcac gcgcgtgcag gatgacctgc gcaagctgca ggccggcgtc 4680
atcgttgccg tgggcacgcc gggccgcgtg tccgacgtga tcaagcgtgg cgcgctgcgc 4740
acagagtcgc tgcgcgtgct ggtgctcgac gaggctgatg agatgctgtc tcagggcttc 4800
gcggaccaga tttacgagat cttccgcttc ctgccgaagg acatccaggt cgcgctcttc 4860
tccgccacga tgccggagga ggtactggag ctgacgaaga agttcatgcg cgactaa 4917




101


2735


DNA


Artificial Sequence




DNA sequence encoding fusion (poly-protein)
constructs comprising multiple Leishmania antigens






101
catatgcacc accaccacca ccacatgtcc tgcggtaacg ccaagatcaa ctctcccgcg 60
ccgtccttcg aggaggtggc gctcatgccc aacggcagct tcaagaagat cagcctctcc 120
tcctacaagg gcaagtgggt cgtgctcttc ttctacccgc tcgacttcac cttcgtgtgc 180
ccgacagagg tcatcgcgtt ctccgacagc gtgagtcgct tcaacgagct caactgcgag 240
gtcctcgcgt gctcgataga cagcgagtac gcgcacctgc agtggacgct gcaggaccgc 300
aagaagggcg gcctcgggac catggcgatc ccaatgctag ccgacaagac caagagcatc 360
gctcgttcct acggcgtgct ggaggagagc cagggcgtgg cctaccgcgg tctcttcatc 420
atcgaccccc atggcatgct gcgtcagatc accgtcaatg acatgccggt gggccgcagc 480
gtggaggagg ttctacgcct gctggaggct tttcagttcg tggagaagca cggcgaggtg 540
tgccccgcga actggaagaa gggcgccccc acgatgaagc cggaaccgaa tgcgtctgtc 600
gagggatact tcagcaagca gggatccatg gacgcaactg agctgaagaa caaggggaac 660
gaagagttct ccgccggccg ctatgtggag gcggtgaact acttctcaaa ggcgatccag 720
ttggatgagc agaacagtgt cctctacagc aaccgctccg cctgttttgc agccatgcag 780
aaatacaagg acgcgctgga cgacgccgac aagtgcatct cgatcaagcc gaattgggcc 840
aagggctacg tgcgccgagg agcagctctc catggcatgc gccgctacga cgatgccatt 900
gccgcgtatg aaaaggggct caaggtggac ccttccaaca gcggctgcgc gcagggcgtg 960
aaggacgtgc aggtagccaa ggcccgcgaa gcacgtgacc ccatcgctcg cgtcttcacc 1020
ccggaggcgt tccgcaagat ccaagagaat cccaagctgt ctctacttat gctgcagccg 1080
gactacgtga agatggtaga caccgtcatc cgcgaccctt cgcagggccg gctgtacatg 1140
gaagaccagc gctttgccct gacgctcatg tacctgagcg gaatgaagat tcccaacgat 1200
ggtgatggcg aggaggagga acgtccgtct gcgaaggcgg cagagacagc gaagccaaaa 1260
gaggagaagc ctctcaccga caacgagaag gaggccctgg cgctcaagga ggagggcaac 1320
aagctgtacc tctcgaagaa gtttgaggag gcgctgacca agtaccaaga ggcgcaggtg 1380
aaagacccca acaacacttt atacattctg aacgtgtcgg ccgtgtactt cgagcagggt 1440
gactacgaca agtgcatcgc cgagtgcgag cacggtatcg agcacggtcg cgagaaccac 1500
tgcgactaca caatcattgc gaagctcatg acccggaacg ccttgtgcct ccagaggcag 1560
aggaagtacg aggctgctat cgacctttac aagcgcgccc ttgtcgagtg gcgtaaccct 1620
gacaccctca agaagctgac ggagtgcgag aaggagcacc aaaaggcggt ggaggaagcc 1680
tacatcgatc ctgagatcgc gaagcagaag aaagacgaag gtaaccagta cttcaaggag 1740
gataagttcc ccgaggccgt ggcagcgtac acggaggcca tcaagcgcaa ccctgccgag 1800
cacacctcct acagcaatcg cgcggccgcg tacatcaagc ttggagcctt caacgacgcc 1860
ctcaaggacg cggagaagtg cattgagctg aagcccgact ttgttaaggg ctacgcgcgc 1920
aagggtcatg cttacttttg gaccaagcag tacaaccgcg cgctgcaggc gtacaatgag 1980
ggcctcaagg tggacccgag caatgcggac tgcaaggatg ggcggtatcg cacaatcatg 2040
aagattcagg agatggcatc tggccaatcc gcggatggcg acgaggcggc gcgccgggcc 2100
atggacgatc ctgaaatcgc ggcaatcatg caagatagct acatgcaact agtgttgaag 2160
gagatgcaga acgatcccac gcgcattcag gagtacatga aggactccgg gatctcatcg 2220
aagatcaaca agctgatttc agctggcatc attcgttttg gtcaggaatt ctgcagatat 2280
ccatcacact ggcggccgct cgagcagatc cggctgctaa caaagcccga aaggaagctg 2340
agttggctgc tgccaccgct gagcaataac tagcataacc ccttggggcc tctaaacggg 2400
tcttgagggg ttttttgctg aaaggaggaa ctatatccgg ataattcttg aagacgaaag 2460
ggcctcgtga tacgcctatt tttataggtt aatgtcatga taataatggt ttcttagacg 2520
tcaggtggca cttttcgggg aaatgtgcgc ggaaccccta tttggttatt tttctaaata 2580
cattcaaata tgtatccgct catgagacaa taacccytga taaatgcttc aataatattg 2640
aaaaaaggaa gaatatgaag tatttcaaca tttcccgggt cccccttatt cccttttttt 2700
gccgccattt tgcctttctg tttttggttc accca 2735




102


1713


DNA


Leishmania major



102
atggcgcagt gcgtgcgtcg gctggtgctg gcggcgacgc tcgccgctgc ggtggcgctg 60
ctgctgtgca cgagcagtgc gccggtggcg cgtgctgctg ggacgaacga cttcactgcg 120
gcgcagcgga cgaacacgct ggcggtgctg caggcgtttg ggcgtgcgat ccctgagctt 180
ggggagaagt gggcgggcaa cgacttctgc tcatgggagt ttatcgtgtg taatgttata 240
ggtgtgaacg tacggggaat cagtccgacg tatgccggca cgctgccgga gatacctgtg 300
aacgtcgact acaggcacgt cgtgatcaag cagctcgact tttccgaaat ggggccgggg 360
ctgagcggga cgctgccgga cagctggagc aagctggaag gactgacttc ccttacgttg 420
tcgggcaaca aagtgagcgg tacgctgccc gcctcatggc acttgatgaa gcggttgaca 480
tctttggtaa ttgcagactt tgacagtatc accggcagcc tgccgcctga gtggagctcg 540
atgcctaatt taaacgctgt ggagctgaag cgactaaaac tgagcggtac gttgcctgcg 600
gactggagct ctttgaaatc actgtcgaac gtcgttcttg aggacacgcc gatcacaggc 660
ttgttgcccc cggagtgggc ctcgctggag agaatacagc agctggttct acggaaattg 720
aagctgaccg gccctctccc tcctcagtgg agctcaatga agatattgca gtatcttact 780
ctggatggca ctcaggtctc cggcacgctg ccgccccagt ggagcgcgat ggcatcggtg 840
cgaattctta acctggaggg tactgaggtc tctggtacgc tgccgcctga gtggatatcg 900
atgagcaggc tgcaaactct gaatctgcgg cgcacgaaag tatccggcac tctgccgccc 960
gaatggagtt ctatgagcag cctggagtac tttcaccttt atcttactca ggtctccggc 1020
acgctgccgc ccgagtggag tgggatgtcg aaggccgcat acttctggct ggaatactgc 1080
gacctgtccg gcagtctgcc gcccgagtgg tcgtcgatgc caaagctgcg cggtatctca 1140
ctgagcggca acaagttctg cgggtgtgtg ccggactcgt gggatcagaa ggctggtctt 1200
gttgtgggca tcgaggacaa gcacaagggc agcgactgct tggctgctaa ggactgcaca 1260
acgaccacca caaaaccccc caccacgaca acgaccccca ctaagccgcc tgccacaacc 1320
accactgagg caccggctga acccacgacc accactgagg caccggctga acccacgacc 1380
accactgagg caccggctga acccacgacc accactgagg caccggctga acccacaacc 1440
accactgagg caccggctga acccacgacc actgctaccc caacaaacac gccgactcct 1500
gcaccagaga cggagtgcga ggtggatggg tgtgaggtgt gcgaggggga ctccgctgcg 1560
aggtgcgcga ggtgccgtga ggactacttc ctgacggacg agaggacgtg cctggtgtac 1620
tgcgatggcg gtgttgctgc tgtgtcgagc ggagtggcag cagcagctgt tgtgtgcgtg 1680
gctgtgctgt tcagcgtggg gctggcggcg tga 1713




103


2421


DNA


Leishmania major




misc_feature




(1)...(2421)




n=A,T,C or G





103
tcgaattcgg cacgagggca cgcacaagac gaagagttcc aaacagcaac gagtatacgc 60
cactgtcgaa aaacagacac gcagtagaga gaaggaggag gaggaggagg aggggggaga 120
gcaagaggcg ggtgggggtt ggagggacag cgctgcgtgc cgccgtctga catgtccgtt 180
ttgatgcgtc ttcgcagagt ggagggagga caccactggc gctgttggcg tgtangcaga 240
gcatcgctcg gctcgtgccg aattcggcac gagcggcacg agccctcgct ctgcctggta 300
agctcagcag acaccgacgc ccgagcaatc ccgcccacgg acctgctgcc gccccgctct 360
gctcgtgacc ctggctgcga atggcgcagt gcgtgcgtcg gctggtgctg gcggcgacgc 420
tcgccgctgc ggtggcgctg ctgctgtgca cgagcagtgc gccggtggcg cgtgctgctg 480
ggacgaacga cttcactgcg gcgcagcgga cgaacacgct ggcggtgctg caggcgtttg 540
ggcgtgcgat ccctgagctt ggggagaagt gggcgggcaa cgacttctgc tcatgggagt 600
ttatcgtgtg taatgttata ggtgtgaacg tacggggaat cagtccgacg tatgccggca 660
cgctgccgga gatacctgtg aacgtcgact acaggcacgt cgtgatcaag cagctcgact 720
tttccgaaat ggggccgggg ctgagcggga cgctgccgga cagctggagc aagctggaag 780
gactgacttc ccttacgttg tcgggcaaca aagtgagcgg tacgctgccc gcctcatggc 840
acttgatgaa gcggttgaca tctttggtaa ttgcagactt tgacagtatc accggcagcc 900
tgccgcctga gtggagctcg atgcctaatt taaacgctgt ggagctgaag cgactaaaac 960
tgagcggtac gttgcctgcg gactggagct ctttgaaatc actgtcgaac gtcgttcttg 1020
aggacacgcc gatcacaggc ttgttgcccc cggagtgggc ctcgctggag agaatacagc 1080
agctggttct acggaaattg aagctgaccg gccctctccc tcctcagtgg agctcaatga 1140
agatattgca gtatcttact ctggatggca ctcaggtctc cggcacgctg ccgccccagt 1200
ggagcgcgat ggcatcggtg cgaattctta acctggaggg tactgaggtc tctggtacgc 1260
tgccgcctga gtggatatcg atgagcaggc tgcaaactct gaatctgcgg cgcacgaaag 1320
tatccggcac tctgccgccc gaatggagtt ctatgagcag cctggagtac tttcaccttt 1380
atcttactca ggtctccggc acgctgccgc ccgagtggag tgggatgtcg aaggccgcat 1440
acttctggct ggaatactgc gacctgtccg gcagtctgcc gcccgagtgg tcgtcgatgc 1500
caaagctgcg cggtatctca ctgagcggca acaagttctg cgggtgtgtg ccggactcgt 1560
gggatcagaa ggctggtctt gttgtgggca tcgaggacaa gcacaagggc agcgactgct 1620
tggctgctaa ggactgcaca acgaccacca caaaaccccc caccacgaca acgaccccca 1680
ctaagccgcc tgccacaacc accactgagg caccggctga acccacgacc accactgagg 1740
caccggctga acccacgacc accactgagg caccggctga acccacgacc accactgagg 1800
caccggctga acccacaacc accactgagg caccggctga acccacgacc actgctaccc 1860
caacaaacac gccgactcct gcaccagaga cggagtgcga ggtggatggg tgtgaggtgt 1920
gcgaggggga ctccgctgcg aggtgcgcga ggtgccgtga ggactacttc ctgacggacg 1980
agaggacgtg cctggtgtac tgcgatggcg gtgttgctgc tgtgtcgagc ggagtggcag 2040
cagcagctgt tgtgtgcgtg gctgtgctgt tcagcgtggg gctggcggcg tgaggacgct 2100
gctgctgttg cgcgcaggca gcggcccccg ctgcgtggca cacgactgtc tgcgtgcttg 2160
cgtgcagcgc cgccccctgc gttggcgtgc gcgtgcgtgt ctctgtgagc atggctgcca 2220
gtggtgccct cgctcctgcc tctcggtgcc tctgcctctc tcggcgtgtt gatgctgtgg 2280
gctgtgtgtg gggctctcat gcggcgctgc tgctcccgcg gtgtcgctcn tctgccccga 2340
ctctctctgc tgccctcctc tctcgcatgc gggagaggga ggggtggcac gtgcgcgcgc 2400
gcmgttgcgc ttgcgattgt g 2421




104


570


PRT


Leishmania major



104
Met Ala Gln Cys Val Arg Arg Leu Val Leu Ala Ala Thr Leu Ala Ala
5 10 15
Ala Val Ala Leu Leu Leu Cys Thr Ser Ser Ala Pro Val Ala Arg Ala
20 25 30
Ala Gly Thr Asn Asp Phe Thr Ala Ala Gln Arg Thr Asn Thr Leu Ala
35 40 45
Val Leu Gln Ala Phe Gly Arg Ala Ile Pro Glu Leu Gly Glu Lys Trp
50 55 60
Ala Gly Asn Asp Phe Cys Ser Trp Glu Phe Ile Val Cys Asn Val Ile
65 70 75 80
Gly Val Asn Val Arg Gly Ile Ser Pro Thr Tyr Ala Gly Thr Leu Pro
85 90 95
Glu Ile Pro Val Asn Val Asp Tyr Arg His Val Val Ile Lys Gln Leu
100 105 110
Asp Phe Ser Glu Met Gly Pro Gly Leu Ser Gly Thr Leu Pro Asp Ser
115 120 125
Trp Ser Lys Leu Glu Gly Leu Thr Ser Leu Thr Leu Ser Gly Asn Lys
130 135 140
Val Ser Gly Thr Leu Pro Ala Ser Trp His Leu Met Lys Arg Leu Thr
145 150 155 160
Ser Leu Val Ile Ala Asp Phe Asp Ser Ile Thr Gly Ser Leu Pro Pro
165 170 175
Glu Trp Ser Ser Met Pro Asn Leu Asn Ala Val Glu Leu Lys Arg Leu
180 185 190
Lys Leu Ser Gly Thr Leu Pro Ala Asp Trp Ser Ser Leu Lys Ser Leu
195 200 205
Ser Asn Val Val Leu Glu Asp Thr Pro Ile Thr Gly Leu Leu Pro Pro
210 215 220
Glu Trp Ala Ser Leu Glu Arg Ile Gln Gln Leu Val Leu Arg Lys Leu
225 230 235 240
Lys Leu Thr Gly Pro Leu Pro Pro Gln Trp Ser Ser Met Lys Ile Leu
245 250 255
Gln Tyr Leu Thr Leu Asp Gly Thr Gln Val Ser Gly Thr Leu Pro Pro
260 265 270
Gln Trp Ser Ala Met Ala Ser Val Arg Ile Leu Asn Leu Glu Gly Thr
275 280 285
Glu Val Ser Gly Thr Leu Pro Pro Glu Trp Ile Ser Met Ser Arg Leu
290 295 300
Gln Thr Leu Asn Leu Arg Arg Thr Lys Val Ser Gly Thr Leu Pro Pro
305 310 315 320
Glu Trp Ser Ser Met Ser Ser Leu Glu Tyr Phe His Leu Tyr Leu Thr
325 330 335
Gln Val Ser Gly Thr Leu Pro Pro Glu Trp Ser Gly Met Ser Lys Ala
340 345 350
Ala Tyr Phe Trp Leu Glu Tyr Cys Asp Leu Ser Gly Ser Leu Pro Pro
355 360 365
Glu Trp Ser Ser Met Pro Lys Leu Arg Gly Ile Ser Leu Ser Gly Asn
370 375 380
Lys Phe Cys Gly Cys Val Pro Asp Ser Trp Asp Gln Lys Ala Gly Leu
385 390 395 400
Val Val Gly Ile Glu Asp Lys His Lys Gly Ser Asp Cys Leu Ala Ala
405 410 415
Lys Asp Cys Thr Thr Thr Thr Thr Lys Pro Pro Thr Thr Thr Thr Thr
420 425 430
Pro Thr Lys Pro Pro Ala Thr Thr Thr Thr Glu Ala Pro Ala Glu Pro
435 440 445
Thr Thr Thr Thr Glu Ala Pro Ala Glu Pro Thr Thr Thr Thr Glu Ala
450 455 460
Pro Ala Glu Pro Thr Thr Thr Thr Glu Ala Pro Ala Glu Pro Thr Thr
465 470 475 480
Thr Thr Glu Ala Pro Ala Glu Pro Thr Thr Thr Ala Thr Pro Thr Asn
485 490 495
Thr Pro Thr Pro Ala Pro Glu Thr Glu Cys Glu Val Asp Gly Cys Glu
500 505 510
Val Cys Glu Gly Asp Ser Ala Ala Arg Cys Ala Arg Cys Arg Glu Asp
515 520 525
Tyr Phe Leu Thr Asp Glu Arg Thr Cys Leu Val Tyr Cys Asp Gly Gly
530 535 540
Val Ala Ala Val Ser Ser Gly Val Ala Ala Ala Ala Val Val Cys Val
545 550 555 560
Ala Val Leu Phe Ser Val Gly Leu Ala Ala
565 570




105


1688


DNA


Leishmania major



105
taacgctata taagtatcag tttctgtact ttattgctca tcactgccgt ttgactgccg 60
cgggcattgg cgctaccact ttcctcactc tttatccctt cagcattgtt tcgtacacac 120
gcacgcgcac gtgaaagagc cgcacgccga cagagcagcc gttccggact ctccgataac 180
tgaacgccac ccacccaaaa aaaatgtcaa agaacgctga ccaggaggag tgggaggatt 240
acggcgacga ggaggtgcag gatgaagaag aggaggacac caccatcaac aactccgacg 300
tggtggtgcg ctacaagaag gccgcaacgt ggtgcaatga aacgttgcgc gtgcttatcg 360
atgccacaaa acctggcgcc aaggtgtgcg acctgtgccg cctcggtgat gacaccatca 420
ccgccaaggt caagacaatg ttcaaaggca cggaaaaagg catcgctttc ccgacctgca 480
tctcggtcaa caactgcgta tgccacaaca gccctggcgt gtcggacgag acgacgcagc 540
aagagatcgc gatgggtgac gtcgtgcact acgacctggg catccacgtg gacggctact 600
gcgccgtcgt cgcgcacacc attcaggtga cagaggacaa tgagcttggc aaggacgaga 660
aggcggcgcg cgtcattaca gcggcgtaca acatcctgaa cacggcgctg cgccagatgc 720
gtcccggtac gaccatctac caggtgacag acgtagttga gaaggctgcg gagcactaca 780
aggtgactcc ggtagacggc gtcctctcgc atatgatgaa gcgctacatc atagacggat 840
accgctgtat cccgcagcgc agggtcgcgg agcacatggt gcacgactac gatctcgaga 900
aagcgcaggt gtggacgcta gacattgtca tgacctccgg caagggcaag ctgaaggagc 960
gcgatgcgcg gccgtgcgtg ttcaaggtgg ctctggactc caactactct gtgaaaatgg 1020
aaagcgcgaa ggaggttcag aaggaaatcg actccaagta tgccaccttc ccctttgcca 1080
tccgcaacct ggaggccaag aaggcccgcc tcggtctcaa cgagatggcg aagcacggtg 1140
ctgtcatccc gtaccctatt ctcttcgaaa aggaaggcga ggtcgtcgcc catttcaaga 1200
ttacggtgct catcagcaac aagaagattg agccgattac cggcctgaag ccgcagaagg 1260
ccccggcgct cgagccatac acggacgaga tgctgcttgc gacgaacaag ctctcgctgt 1320
cgctagagaa gaaggcggcg aagtagacgg ccgtggcatc cgtgacgctg tactgcgagc 1380
tttcgtaggc gtacgcctct tgtgaggcgt acacgtgtgc tgtttgcgga cgaggaggca 1440
cccattctgt tccccttctt cgctaatctc cgcgtttcct ctgacgctgg cttctctgcc 1500
ggagtgtggt gaggcgcgtg ggggagaaac ggcccactcg catgcctgtg catacgcgag 1560
cacggtaggg agcgcggtgt gtgtgtgtgt gggggggcgt gttacgagta caaaagaggc 1620
tcgatctctg cgactctttt ctttctgtaa acagggaaca taagtaacca aaaaaaaaaa 1680
aaaaaaaa 1688




106


380


PRT


Leishmania major



106
Met Ser Lys Asn Ala Asp Gln Glu Glu Trp Glu Asp Tyr Gly Asp Glu
1 5 10 15
Glu Val Gln Asp Glu Glu Glu Glu Asp Thr Thr Ile Asn Asn Ser Asp
20 25 30
Val Val Val Arg Tyr Lys Lys Ala Ala Thr Trp Cys Asn Glu Thr Leu
35 40 45
Arg Val Leu Ile Asp Ala Thr Lys Pro Gly Ala Lys Val Cys Asp Leu
50 55 60
Cys Arg Leu Gly Asp Asp Thr Ile Thr Ala Lys Val Lys Thr Met Phe
65 70 75 80
Lys Gly Thr Glu Lys Gly Ile Ala Phe Pro Thr Cys Ile Ser Val Asn
85 90 95
Asn Cys Val Cys His Asn Ser Pro Gly Val Ser Asp Glu Thr Thr Gln
100 105 110
Gln Glu Ile Ala Met Gly Asp Val Val His Tyr Asp Leu Gly Ile His
115 120 125
Val Asp Gly Tyr Cys Ala Val Val Ala His Thr Ile Gln Val Thr Glu
130 135 140
Asp Asn Glu Leu Gly Lys Asp Glu Lys Ala Ala Arg Val Ile Thr Ala
145 150 155 160
Ala Tyr Asn Ile Leu Asn Thr Ala Leu Arg Gln Met Arg Pro Gly Thr
165 170 175
Thr Ile Tyr Gln Val Thr Asp Val Val Glu Lys Ala Ala Glu His Tyr
180 185 190
Lys Val Thr Pro Val Asp Gly Val Leu Ser His Met Met Lys Arg Tyr
195 200 205
Ile Ile Asp Gly Tyr Arg Cys Ile Pro Gln Arg Arg Val Ala Glu His
210 215 220
Met Val His Asp Tyr Asp Leu Glu Lys Ala Gln Val Trp Thr Leu Asp
225 230 235 240
Ile Val Met Thr Ser Gly Lys Gly Lys Leu Lys Glu Arg Asp Ala Arg
245 250 255
Pro Cys Val Phe Lys Val Ala Leu Asp Ser Asn Tyr Ser Val Lys Met
260 265 270
Glu Ser Ala Lys Glu Val Gln Lys Glu Ile Asp Ser Lys Tyr Ala Thr
275 280 285
Phe Pro Phe Ala Ile Arg Asn Leu Glu Ala Lys Lys Ala Arg Leu Gly
290 295 300
Leu Asn Glu Met Ala Lys His Gly Ala Val Ile Pro Tyr Pro Ile Leu
305 310 315 320
Phe Glu Lys Glu Gly Glu Val Val Ala His Phe Lys Ile Thr Val Leu
325 330 335
Ile Ser Asn Lys Lys Ile Glu Pro Ile Thr Gly Leu Lys Pro Gln Lys
340 345 350
Ala Pro Ala Leu Glu Pro Tyr Thr Asp Glu Met Leu Leu Ala Thr Asn
355 360 365
Lys Leu Ser Leu Ser Leu Glu Lys Lys Ala Ala Lys
370 375 380




107


1565


DNA


Leishmania major



107
taacgctata taagtatcag tttctgtact ttattgctct tcgctctcgt tcttcgaaca 60
aacaccttta aaccgccttc caacccctct ttcttctttt tcagccatgc gtgaggctat 120
ctgcatccac atcggccagg ccggctgcca ggtcggtaac gcgtgctggg agctgttctg 180
ccttgagcac ggcatccagc ctgatggctc catgccctct gacaagtgca tcggtgttga 240
ggatgacgcg ttcaacacgt tcttctcgga gaccggtgct ggcaagcacg ttccgcgctg 300
catcttcctg gacctcgagc ctacggtcgt ggatgaggtg cgcaccggca cgtaccgcca 360
gctgttcaac cccgagcagc tggtgtctgg caaggaggat gcggcgaaca actacgctcg 420
tggccactac acgatcggca aggagatcgt cgaccttgcg ctggaccgca ttcgcaagct 480
ggcggacaac tgcactggtc tccagggctt tatggtgttc cacgctgtgg gtggcggcac 540
cggctctggc ctcggtgcgc tgctgctgga gcgcctgtct gtggactacg gcaagaagtc 600
caagctcggc tacaccgtgt acccgagccc gcaggtgtcg actgccgtcg tggagccgta 660
caactgcgtg ctgtcgacgc actcgctgct cgagcacacc gatgttgcga cgatgctcga 720
caatgaggcc atctacgacc tcactcgtcg ttctctcgac attgagcgcc cgtcgtacac 780
gaacgtgaac cgcctgatcg gccaggtggt gtcgtctctg acggcgtcgc tgcgcttcga 840
tggtgcgctg aacgtggacc tgacggagtt ccagacgaac cttgtgccgt acccgcgcat 900
ccacttcgtg ctgacgagct acgctccggt ggtgtctgcc gagaaggcgt accacgagca 960
gctgtccgtc gcggacatca cgaactcggt gtttgagcct gctggcatgc tgacgaagtg 1020
cgatcctcgc cacggcaagt acatgtcgtg ctgcctcatg taccgcggtg atgtcgtgcc 1080
gaaggatgtc aacgccgcga ttgcgacgat caagacgaag cgcacaattc agttcgtgga 1140
ctggtgcccg accggcttca agtgcggcat caactaccag ccgccgaccg ttgtgcccgg 1200
cggtgacctc gcgaaggtgc agcgcgccgt gtgcatgatt gccaactcga ccgcgatcgc 1260
tgaggtgttt gcccgcatcg accacaagtt cgacctgatg tacagcaagc gcgcgtttgt 1320
gcactggtac gtgggtgagg gcatggagga gggcgagttc tccgaggcgc gcgaggatct 1380
cgctgcgctg gagaaggact acgaggaggt tggcgccgag tccgccgacg acatgggcga 1440
ggaggacgtc gaggagtact aaggtagact cgtgccgcgc gctgatgatg taggtgcacg 1500
cgtgcgtgtg ctgcagcgga gccgccgcca ccgcgactgt gtgtgtgtgc gcgcgtgacg 1560
accgg 1565




108


451


PRT


Leishmania major



108
Met Arg Glu Ala Ile Cys Ile His Ile Gly Gln Ala Gly Cys Gln Val
1 5 10 15
Gly Asn Ala Cys Trp Glu Leu Phe Cys Leu Glu His Gly Ile Gln Pro
20 25 30
Asp Gly Ser Met Pro Ser Asp Lys Cys Ile Gly Val Glu Asp Asp Ala
35 40 45
Phe Asn Thr Phe Phe Ser Glu Thr Gly Ala Gly Lys His Val Pro Arg
50 55 60
Cys Ile Phe Leu Asp Leu Glu Pro Thr Val Val Asp Glu Val Arg Thr
65 70 75 80
Gly Thr Tyr Arg Gln Leu Phe Asn Pro Glu Gln Leu Val Ser Gly Lys
85 90 95
Glu Asp Ala Ala Asn Asn Tyr Ala Arg Gly His Tyr Thr Ile Gly Lys
100 105 110
Glu Ile Val Asp Leu Ala Leu Asp Arg Ile Arg Lys Leu Ala Asp Asn
115 120 125
Cys Thr Gly Leu Gln Gly Phe Met Val Phe His Ala Val Gly Gly Gly
130 135 140
Thr Gly Ser Gly Leu Gly Ala Leu Leu Leu Glu Arg Leu Ser Val Asp
145 150 155 160
Tyr Gly Lys Lys Ser Lys Leu Gly Tyr Thr Val Tyr Pro Ser Pro Gln
165 170 175
Val Ser Thr Ala Val Val Glu Pro Tyr Asn Cys Val Leu Ser Thr His
180 185 190
Ser Leu Leu Glu His Thr Asp Val Ala Thr Met Leu Asp Asn Glu Ala
195 200 205
Ile Tyr Asp Leu Thr Arg Arg Ser Leu Asp Ile Glu Arg Pro Ser Tyr
210 215 220
Thr Asn Val Asn Arg Leu Ile Gly Gln Val Val Ser Ser Leu Thr Ala
225 230 235 240
Ser Leu Arg Phe Asp Gly Ala Leu Asn Val Asp Leu Thr Glu Phe Gln
245 250 255
Thr Asn Leu Val Pro Tyr Pro Arg Ile His Phe Val Leu Thr Ser Tyr
260 265 270
Ala Pro Val Val Ser Ala Glu Lys Ala Tyr His Glu Gln Leu Ser Val
275 280 285
Ala Asp Ile Thr Asn Ser Val Phe Glu Pro Ala Gly Met Leu Thr Lys
290 295 300
Cys Asp Pro Arg His Gly Lys Tyr Met Ser Cys Cys Leu Met Tyr Arg
305 310 315 320
Gly Asp Val Val Pro Lys Asp Val Asn Ala Ala Ile Ala Thr Ile Lys
325 330 335
Thr Lys Arg Thr Ile Gln Phe Val Asp Trp Cys Pro Thr Gly Phe Lys
340 345 350
Cys Gly Ile Asn Tyr Gln Pro Pro Thr Val Val Pro Gly Gly Asp Leu
355 360 365
Ala Lys Val Gln Arg Ala Val Cys Met Ile Ala Asn Ser Thr Ala Ile
370 375 380
Ala Glu Val Phe Ala Arg Ile Asp His Lys Phe Asp Leu Met Tyr Ser
385 390 395 400
Lys Arg Ala Phe Val His Trp Tyr Val Gly Glu Gly Met Glu Glu Gly
405 410 415
Glu Phe Ser Glu Ala Arg Glu Asp Leu Ala Ala Leu Glu Lys Asp Tyr
420 425 430
Glu Glu Val Gly Ala Glu Ser Ala Asp Asp Met Gly Glu Glu Asp Val
435 440 445
Glu Glu Tyr
450




109


1908


DNA


Leishmania major




misc_feature




(1)...(1908)




n = A,T,C or G





109
taacgctata taagtatcag tttctgtact ttattgtaag cgcaatcgag tttcaacagc 60
taacaaaatg gtgaacttta ccgtcgatca ggtccgcgag ctgatggact atccggacca 120
gatccggaac atgtccgtga ttgctcacgt cgaccacggc aagtcgacgc tgtccgactc 180
tctcgttggt gctgccggca tcatcaagat ggaggaggct ggcgataagc ggatcatgga 240
tacacgcgcg gatgagatcg cgcgtggtat cacgatcaag tccaccgcca tctccatgca 300
ctaccacgtg ccgaaggaga tgatcggcga tctggatgac gacaagcgcg acttcctgat 360
caacctgatc gactcccccg gacacgtcga cttcagctcc gaggtgactg ccgctcttcg 420
tgtgacggac ggcgcgctgg tcgtggtgga ctgcgtggag ggcgtgtgcg tgcagacgga 480
gacggtgctg cgccaggcgc tgacggagcg catccgccct gttgtgttca tcaacaaggt 540
ggaccgcgcc atccttgagc tccaactgga ccccgaggag gcgtaccagg gcttcgtgaa 600
gacgctgcag aacgtgaacg tggtggttgc cacgtacaat gaccccagca tgggcgacgt 660
gcaggtgtcc cccgagaagg gcactgtggc gatcggctct ggcctgcagg cgtgggcgtt 720
ctcgctgacc cgctttgcga acatgtatgc ggcgaagttc ggcgtggacg agctgaagat 780
gcgcgagcgc ctgtggggcg acaacttctt tgacgcgaag aacaagaagt ggatcaagca 840
ggagacgaac gccgatggcg agcgcgtgcg ccgcgcgttc tgccagttct gcctagaccc 900
catctaccag atcttcgacg ctgtgatgaa cgagaagaag gacaaggtgg acaagatgct 960
caagtcgctg cacgtgacgc tgacggctga ggagcgcgag caggtgccga agaagcttct 1020
gaagacggtg atgatgaagt tcctgccggc tgctgagacg ctgctacaga tgatcgtggc 1080
gcacctgccg tcgcccaaga aggcgcaggc gtaccgtgcg gagatgctgt actctggcga 1140
ggcgtcgccg gaggacaagt acttcatggg tatcaagaac tgcgaccccg ctgcgccgct 1200
catgctgtac atcagcaaga tggtgccgac ggccgaccgc ggccgcttct tcgcctttgg 1260
ccgcatcttc tccggtaagg tgcgcagcgg ccagaaggtg cgcatcatgg gtaacaacta 1320
cgtctacggc aagaagcagg acctgtacga ggacaagcct gtgcagcgct ccgtgctgat 1380
gatgggccgc taccaggagg ccgtggagga catgccgtgc ggtaacgtgg tgggccttgt 1440
gggcgtggac aagtacatcg tgaagtccgc gacgatcacg gacgatggcg agagcccgca 1500
cccgctgcgc gacatgaagt actctgtgtc gcccgtcgtg cgtgtggccg tggaggcgaa 1560
gaacccgtcc gacctgccga agcttgtgga gggcctgaag cgccttgcca agtccgaccc 1620
gctggtggtg tgcagcattg aggagtctgg cgagcacatt gttgccggcg ctggcgagct 1680
tcaccttgag atttgcctga aggatctcca ggaggacttc atgaacggcg cgccgctnaa 1740
gatctccgag ccggtggtgt cgttccgcga gacggtgacg gatgtgtcgt cgcagcagtg 1800
cctgtcgaag tctgcgaaca agcacaaccg tctcttctgc cgcggtgcgc cgctnacaga 1860
gganctggcg ctggcgatng angaaggcac cgctggtccc gangcgga 1908




110


845


PRT


Leishmania major




VARIANT




(1)...(845)




Xaa = Any Amino Acid





110
Met Val Asn Phe Thr Val Asp Gln Val Arg Glu Leu Met Asp Tyr Pro
1 5 10 15
Asp Gln Ile Arg Asn Met Ser Val Ile Ala His Val Asp His Gly Lys
20 25 30
Ser Thr Leu Ser Asp Ser Leu Val Gly Ala Ala Gly Ile Ile Lys Met
35 40 45
Glu Glu Ala Gly Asp Lys Arg Ile Met Asp Thr Arg Ala Asp Glu Ile
50 55 60
Ala Arg Gly Ile Thr Ile Lys Ser Thr Ala Ile Ser Met His Tyr His
65 70 75 80
Val Pro Lys Glu Met Ile Gly Asp Leu Asp Asp Asp Lys Arg Asp Phe
85 90 95
Leu Ile Asn Leu Ile Asp Ser Pro Gly His Val Asp Phe Ser Ser Glu
100 105 110
Val Thr Ala Ala Leu Arg Val Thr Asp Gly Ala Leu Val Val Val Asp
115 120 125
Cys Val Glu Gly Val Cys Val Gln Thr Glu Thr Val Leu Arg Gln Ala
130 135 140
Leu Thr Glu Arg Ile Arg Pro Val Val Phe Ile Asn Lys Val Asp Arg
145 150 155 160
Ala Ile Leu Glu Leu Gln Leu Asp Pro Glu Glu Ala Tyr Gln Gly Phe
165 170 175
Val Lys Thr Leu Gln Asn Val Asn Val Val Val Ala Thr Tyr Asn Asp
180 185 190
Pro Ser Met Gly Asp Val Gln Val Ser Pro Glu Lys Gly Thr Val Ala
195 200 205
Ile Gly Ser Gly Leu Gln Ala Trp Ala Phe Ser Leu Thr Arg Phe Ala
210 215 220
Asn Met Tyr Ala Ala Lys Phe Gly Val Asp Glu Leu Lys Met Arg Glu
225 230 235 240
Arg Leu Trp Gly Asp Asn Phe Phe Asp Ala Lys Asn Lys Lys Trp Ile
245 250 255
Lys Gln Glu Thr Asn Ala Asp Gly Glu Arg Val Arg Arg Ala Phe Cys
260 265 270
Gln Phe Cys Leu Asp Pro Ile Tyr Gln Ile Phe Asp Ala Val Met Asn
275 280 285
Glu Lys Lys Asp Lys Val Asp Lys Met Leu Lys Ser Leu His Val Thr
290 295 300
Leu Thr Ala Glu Glu Arg Glu Gln Val Pro Xaa Lys Leu Leu Lys Thr
305 310 315 320
Val Met Met Xaa Phe Leu Pro Ala Ala Glu Thr Leu Leu Gln Met Ile
325 330 335
Val Ala His Leu Pro Ser Pro Lys Lys Ala Gln Ala Tyr Arg Ala Glu
340 345 350
Met Leu Tyr Ser Gly Glu Ala Ser Pro Glu Asp Lys Tyr Phe Met Gly
355 360 365
Ile Lys Asn Cys Asp Pro Ala Ala Pro Leu Met Leu Tyr Ile Ser Lys
370 375 380
Met Val Pro Thr Ala Asp Arg Gly Arg Phe Phe Ala Phe Gly Arg Ile
385 390 395 400
Phe Ser Gly Lys Val Arg Ser Gly Gln Lys Val Arg Ile Met Gly Asn
405 410 415
Asn Tyr Val Tyr Gly Lys Lys Gln Asp Leu Tyr Glu Asp Lys Pro Val
420 425 430
Gln Arg Ser Val Leu Met Met Gly Arg Tyr Gln Glu Ala Val Glu Asp
435 440 445
Met Pro Cys Gly Asn Val Val Gly Leu Val Gly Val Asp Lys Tyr Ile
450 455 460
Val Lys Ser Ala Thr Ile Thr Asp Asp Gly Glu Ser Pro His Pro Leu
465 470 475 480
Arg Asp Met Lys Tyr Ser Val Ser Pro Val Val Arg Val Ala Val Glu
485 490 495
Ala Lys Asn Pro Ser Asp Leu Pro Lys Leu Val Glu Gly Leu Lys Arg
500 505 510
Leu Ala Lys Ser Asp Pro Leu Val Val Cys Ser Ile Glu Glu Ser Gly
515 520 525
Glu His Ile Val Ala Gly Ala Gly Glu Leu His Leu Glu Ile Cys Leu
530 535 540
Lys Asp Leu Gln Glu Asp Phe Met Asn Gly Ala Pro Leu Lys Ile Ser
545 550 555 560
Glu Pro Val Val Ser Phe Arg Glu Thr Val Thr Asp Val Ser Ser Gln
565 570 575
Gln Cys Leu Ser Lys Ser Ala Asn Lys His Asn Arg Leu Phe Cys Arg
580 585 590
Gly Ala Pro Leu Thr Glu Glu Leu Ala Leu Ala Met Glu Glu Gly Thr
595 600 605
Ala Gly Pro Glu Ala Asp Pro Lys Val Arg Ala Arg Phe Leu Ala Asp
610 615 620
Asn Tyr Glu Trp Asp Val Gln Glu Ala Arg Lys Ile Trp Cys Tyr Gly
625 630 635 640
Pro Asp Asn Arg Gly Pro Asn Val Val Val Asp Val Thr Lys Gly Val
645 650 655
Gln Asn Met Ala Glu Met Lys Asp Ser Phe Val Ala Ala Trp Gln Trp
660 665 670
Ala Thr Arg Glu Gly Val Leu Cys Asp Glu Asn Met Arg Gly Val Arg
675 680 685
Val Asn Val Glu Asp Val Thr Met His Ala Asp Ala Ile His Arg Gly
690 695 700
Gly Val Gln Ile Ile Pro Thr Ala Arg Arg Val Phe Tyr Ala Cys Cys
705 710 715 720
Leu Thr Ala Ser Pro Arg Leu Met Glu Pro Met Phe Val Val Asp Ile
725 730 735
Gln Thr Val Glu His Ala Met Gly Gly Ile Tyr Gly Val Leu Thr Arg
740 745 750
Arg Arg Gly Val Ile Ile Gly Glu Glu Asn Arg Pro Gly Thr Pro Ile
755 760 765
Tyr Asn Val Arg Ala Tyr Leu Pro Val Ala Glu Ser Phe Gly Phe Thr
770 775 780
Ala Asp Leu Arg Ala Gly Thr Gly Gly Gln Ala Phe Pro Gln Cys Val
785 790 795 800
Phe Asp His Trp Gln Glu Tyr Pro Gly Asp Pro Leu Glu Pro Lys Ser
805 810 815
Leu Ala Asn Thr Thr Thr Leu Gly Ile Arg Thr Arg Lys Gly Leu Lys
820 825 830
Pro Asp Ile Pro Gly Leu Asp Gln Phe Met Asp Lys Leu
835 840 845




111


997


DNA


Leishmania major



111
ggatccgccg ccaccatggt gaacgtgtgc gttgttggtg ctgccggcgg cattggccag 60
tcgctgtcgc tgctgttggt gcgccagctg ccgtacggga gcacgttgtc gctgttcgac 120
gttgtgggcg ctgcaggcgt cgcagcagac ctgtcgcatg tggacaacgc cggtgtgcag 180
gtgaagtttg cggagggcaa gatcggccat aagcgcgacc ctgcgctggc agagcttgcg 240
aagggcgtgg atgtgtttgt aatggtggct ggcgttccac gcaagccggg catgacgcgc 300
gacgaccttt tcaaaatcaa cgccggaatc atcctggacc ttgtgctgac gtgcgcgtcg 360
tcgagtccaa aggcggtgtt ctgcattgtg acgaaccctg tgaacagcac ggtcgcgatc 420
gcggcagagg cgctgaagag ccttggcgta tacgaccgaa accggctgct tggcgtgtcg 480
ctgctggacg ggctgcgcgc gacgtgcttc atcaacgagg cgcgcaagcc cttagtcgtg 540
tcgcaggtac cagttgttgg cgggcacagc gacacaacga ttgtgccgtt gttctaccag 600
ctaccggggc cgttgccgga gcaggcgacg ctggacaaga tcgtgaagcg cgtgcaggtc 660
gcaggcacag aagtggtgaa ggcgaaggcc gggcgcgggt ctgcgacgct gtcgatggcg 720
gaggctggcg cgcggttcgc gttgaaggtt gtggagggtc tgaccggcac gggtaacccg 780
ctggtgtacg catatgtaga cacagacggg cagcacgaga cgacgttcct cgcgatccct 840
gtggtgcttg gcatgaatgg aatcgagaag cgcctgccga ttggtccgct gcactcgacg 900
gaggaaacgc tgctgaaggc ggcactgccg gtgatcaaga agaatatcgt gaagggcagc 960
gagttcgcgc gctcacacct gtagcacctc agaattc 997




112


322


PRT


Leishmania major



112
Met Val Asn Val Cys Val Val Gly Ala Ala Gly Gly Ile Gly Gln Ser
1 5 10 15
Leu Ser Leu Leu Leu Val Arg Gln Leu Pro Tyr Gly Ser Thr Leu Ser
20 25 30
Leu Phe Asp Val Val Gly Ala Ala Gly Val Ala Ala Asp Leu Ser His
35 40 45
Val Asp Asn Ala Gly Val Gln Val Lys Phe Ala Glu Gly Lys Ile Gly
50 55 60
His Lys Arg Asp Pro Ala Leu Ala Glu Leu Ala Lys Gly Val Asp Val
65 70 75 80
Phe Val Met Val Ala Gly Val Pro Arg Lys Pro Gly Met Thr Arg Asp
85 90 95
Asp Leu Phe Lys Ile Asn Ala Gly Ile Ile Leu Asp Leu Val Leu Thr
100 105 110
Cys Ala Ser Ser Ser Pro Lys Ala Val Phe Cys Ile Val Thr Asn Pro
115 120 125
Val Asn Ser Thr Val Ala Ile Ala Ala Glu Ala Leu Lys Ser Leu Gly
130 135 140
Val Tyr Asp Arg Asn Arg Leu Leu Gly Val Ser Leu Leu Asp Gly Leu
145 150 155 160
Arg Ala Thr Cys Phe Ile Asn Glu Ala Arg Lys Pro Leu Val Val Ser
165 170 175
Gln Val Pro Val Val Gly Gly His Ser Asp Thr Thr Ile Val Pro Leu
180 185 190
Phe Tyr Gln Leu Pro Gly Pro Leu Pro Glu Gln Ala Thr Leu Asp Lys
195 200 205
Ile Val Lys Arg Val Gln Val Ala Gly Thr Glu Val Val Lys Ala Lys
210 215 220
Ala Gly Arg Gly Ser Ala Thr Leu Ser Met Ala Glu Ala Gly Ala Arg
225 230 235 240
Phe Ala Leu Lys Val Val Glu Gly Leu Thr Gly Thr Gly Asn Pro Leu
245 250 255
Val Tyr Ala Tyr Val Asp Thr Asp Gly Gln His Glu Thr Thr Phe Leu
260 265 270
Ala Ile Pro Val Val Leu Gly Met Asn Gly Ile Glu Lys Arg Leu Pro
275 280 285
Ile Gly Pro Leu His Ser Thr Glu Glu Thr Leu Leu Lys Ala Ala Leu
290 295 300
Pro Val Ile Lys Lys Asn Ile Val Lys Gly Ser Glu Phe Ala Arg Ser
305 310 315 320
His Leu






Claims
  • 1. A fusion protein comprising the amino acid sequence of SEQ ID NO:24.
  • 2. A fusion protein comprising an immunogenic portion of SEQ ID NO:24, wherein said immunogenic portion selectively binds to anti-Leishmania antibodies specific for SEQ ID NO: 24.
REFERENCE TO RELATED APPLICATIONS

This application is a continuation-in-part of U.S. patent application Ser. No. 09/551,974 filed Apr. 14, 2000 now U.S. Pat. No. 6,500,437, which is a continuation-in-part of U.S. patent application Ser. No. 09/183,861, filed Oct. 30, 1998, now U.S. Pat. No. 6,365,165, which is a continuation in part of U.S. patent application Ser. No. 09/022,765, filed Feb. 12, 1998, now U.S. Pat. No. 6,375,955, which is a continuation-in-part of U.S. patent application Ser. No. 08/920,609, filed Aug. 27, 1997, which is a continuation-in-part of U.S. patent application Ser. No. 08/798,841, filed Feb. 12, 1997, which is a continuation-in-part of U.S. patent application Ser. No. 08/533,669, filed Sep. 22, 1995, now U.S. Pat. No. 5,834,592.

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Number Name Date Kind
4870006 Dragon et al. Sep 1989 A
5411865 Reed May 1995 A
5571515 Scott et al. Nov 1996 A
5719263 Reed Feb 1998 A
5834592 Reed et al. Nov 1998 A
5846748 Mandal et al. Dec 1998 A
5876735 Reed Mar 1999 A
5876966 Reed Mar 1999 A
5879687 Reed Mar 1999 A
5910306 Alving et al. Jun 1999 A
5912166 Reed et al. Jun 1999 A
5961970 Lowell et al. Oct 1999 A
5965142 Dillon et al. Oct 1999 A
5980898 Glenn et al. Nov 1999 A
5985284 Lowell Nov 1999 A
6013268 Reed Jan 2000 A
6031077 Klimowski et al. Feb 2000 A
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Number Date Country
WO 9529239 Nov 1995 WO
WO 9639524 Dec 1996 WO
WO 9711180 Mar 1997 WO
WO 9835045 Aug 1998 WO
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Continuation in Parts (6)
Number Date Country
Parent 09/551974 Apr 2000 US
Child 09/565501 US
Parent 09/183861 Oct 1998 US
Child 09/551974 US
Parent 09/022765 Feb 1998 US
Child 09/183861 US
Parent 08/920609 Aug 1997 US
Child 09/022765 US
Parent 08/798841 Feb 1997 US
Child 08/920609 US
Parent 08/533669 Sep 1995 US
Child 08/798841 US