Patent Grant
12065664
The Sequence Listing in ASCII text file format of 3,874 bytes in size, created on Dec. 21, 2020, with the file name “2020-12-21 SequenceListing-PEER9A,” filed in the U.S. Patent and Trademark Office on even date herewith, is hereby incorporated herein by reference.
The invention relates to targeted lipid particles for delivery of nucleic acid molecules to Leukocytes (such as primary T lymphocytes or B lymphocytes) and uses thereof.
RNA interference (RNAi) can be activated by introducing synthetic short double-stranded RNA fragments, termed small interfering (si)RNAs, into cells to silence genes bearing complementary sequences. RNAi can serve a tool for evaluating the role of specific genes in cellular and disease processes and for therapeutic applications, by specific silencing of disease-relevant genes in a wide variety of diseases such as cancer, inflammation, neurodegenerative diseases and genetic disorders. However, the efficient, specific and safe delivery of RNAi payloads remains a major challenge facing the application of RNAi therapeutics to most diseases.
Studies have shown significant improvements in methodologies for the recognition and delivery of siRNAs to specific disease-relevant cell types. However, most of these delivery approaches have not been optimized to facilitate the intracellular trafficking of siRNAs into the cytoplasm where they provide the targeting component of the RNA-induced silencing complex (RISC) allowing it to direct the degradation of specific mRNAs.
The use of microfluidic mixing device has greatly increased the efficacy of producing Lipid-based nanoparticles (LNPs) LNPs containing mixtures of lipids, including fusogenic and ionizable amino lipids, to enhance both the encapsulation of siRNAs and endosomal escape once delivered to the target cells. Recent studies have shown the efficacy of utilizing this technology to effectively deliver siRNA to hepatocytes. Compared to most cell types, hepatocytes have been shown to be permissive to in vivo siRNA delivery, including the delivery of naked siRNAs using hydrodynamic injection.
Hematopoietic cells, such as leukocytes in general, and primary T lymphocytes and B-cells, in particular, are notoriously hard to transfect with small interfering RNAs (siRNAs). Modulating immune cells function, such as T cells and B-cells, by down regulating specific genes using RNA interference (RNAi) holds tremendous potential in advancing targeted therapies in many immune related disorders including cancer, inflammation, autoimmunity and viral infections.
CD4+T lymphocytes play essential roles in the immune system through their interaction with antigen presenting cells (APCs) and the secretion of cytokines that regulate and balance the inflammatory response. Although several strategies have been used to knockdown gene expression in T cells in vitro and in vivo, efficient and specific delivery of siRNAs to T cells in therapeutically relevant doses remains a major hurdle to the adoption of this technology for clinical applications.
MCL is an aggressive B-cell malignancy characterized by a t(11:14) chromosomal translocation that juxtaposes the proto-oncogene encoding cyclin D1 (cycD1) to the immunoglobulin heavy chain gene promoter. This leads to constitutive over-expression of cycD1, a protein that is not expressed in healthy B-lymphocytes. Current MCL therapy mainly relies on conventional chemotherapy, anti-CD20 cytotoxic monoclonal antibodies, autologous stem cell transplantation, and more recently, small molecule inhibitors of critical molecular pathways, such as the BTK inhibitor, ibrutinib. Unfortunately, relapse and progressive resistance to treatment lead to short median survival. MCL has one of the worst prognoses among lymphomas. It was previously shown that cycD1 downregulation in MCL cell lines using RNAi inhibits proliferation and causes cell cycle arrest and apoptosis. Yet, the clinical application of this approach is hindered by the lack of appropriate systems that could deliver RNAi payloads to MCL cells in an efficient and safe manner. RNAi therapeutics for B-cell malignancies is especially challenging, since these cells are dispersed and are intrinsically resistant to transfection with nucleic acids. CD38 is expressed on the surface of immature hematopoietic cells, including immature B cells. Its expression is tightly regulated during B cell ontogeny—it is expressed on bone marrow precursors, but not mature B cells. CD38 is expressed on most MCLs.
Several in vivo studies have suggested that LNP-based approaches may be effective for targeting leukocytes. For example, Novobrantseva et al. demonstrated gene knockdown in murine peritoneal macrophages in vivo, and while He et. al showed robust gene silencing in human T cells in vitro, and a moderate level of generalized (i.e. not specific to any lymphocyte population) silencing in spleen and bone marrow hematopoietic tissues.
Nevertheless, there is a need in the art for suitable and efficient, specifically targeted delivery platforms for potent gene silencing using siRNA technology in leukocytes, in particular specific subsets of leukocytes, including primary lymphocytes, such as B-cells and T-cells, and their use in new diagnostic and therapeutic approaches to dampen leukocytes related conditions, such as, inflammation and the harmful immune responses that occur during autoimmunity, lymphotropic viral infections (such as HIV), and/or to treat cancers, such as, blood cancers, including lymphomas, such as MCL.
According to some embodiments, there are provided targeted lipid-based particles, compositions comprising the same and uses thereof for the efficient, targeted delivery of nucleic acids (such as inhibitory RNA molecules) to leukocytes, such as primary lymphocytes (including B-cells and T-cells).
According to some embodiments, there are provided targeted lipid-based particles, which include a plurality of lipids and a PEG-maleimide moiety/derivative, conjugated to a targeting moiety; and optionally nucleic acid encapsulated within. The targeted lipid-based particles are in particular efficient in specific delivery of nucleic acid molecules, to specific subsets of leukocytes, such as, primary lymphocytes, including T cells (such as, CD4+ T Cells) and B-cells. In some embodiments, the disclosed targeted particles can be utilized in various diagnostic and therapeutic applications of leukocyte-related conditions, such as, cancer, viral infections and autoimmunity.
According to some embodiments, the present invention is based in part on an advantageous composition of lipid-based particles, which enables a specific, targeted delivery of nucleic acid molecules (such as siRNA), to leukocytes (such as lymphocytes), which is a challenging and non-trivial task, since such cells are dispersed and are intrinsically resistant to transfection with nucleic acid molecules. Advantageously, in order to increase the efficacy of nucleic acid molecules (such as siRNA) delivery, the targeted tLNPs are formulated with several lipids designed to improve the stability and efficacy of siRNA delivery, as well as additional moieties, such as PEG and/or maleimide. The targeted LNPs are surface functionalized with targeting moieties (such as, antibodies, peptides or ligands) that specifically recognize cell surface antigens whose expression is restricted to or enriched on specific cell type, and which allow delivery to specific subtypes of leukocytes. In some embodiments, the targeting moiety is an antibody. For example, in some exemplary embodiments, the targeted particles are conjugated to a specific anti-CD4 monoclonal antibody (mAb), which allows specific delivery of the siRNAs encapsulated within the particles only to CD4+T lymphocytes, and not other subtypes of leukocytes. For example, in some exemplary embodiments, the targeted particles are conjugated to a specific anti-CD38 monoclonal antibody (mAb), which allows specific delivery of the siRNAs encapsulated within the particles only to B-cell lymphocytes malignancies (such as MCL), and not other subtypes of leukocytes.
According to some embodiments, the particles disclosed herein are advantageous as they are uniformly sized, while exhibiting a small, nanoscale mean diameter (average diameter of about 58 nm) and extremely high encapsulation rate (close to 100%) of siRNA as the nucleic acid. Further, the preparation method of the particles, which utilize a microfluidic mixer system is advantageous as it allows a temporally efficient process, which avoids the use of extrusion of lipid particles through appropriately sized filters.
According to some embodiments, the particles disclosed herein and methods of use thereof are advantageous since knockdown of lymphatic cells, such as B cells and T-cells has not been previously demonstrated with such lipid-based targeted particles. Likewise, it has not been previously demonstrated that MCL cells can be targeted with lipid-based particles, in vivo, and further, that specific target gene can be knocked-down in these cells and that can in vivo selectively kill these cells.
According to some embodiments, the particles disclosed herein are particularly advantageous for use in hematological tissues. The blood supply in the hematological tissues, where MCL cells mostly reside, including spleen and bone marrow, is made up of sinusoids that allow small nanoparticles tissue access. Selective targeting of lymphoma cells by antibody-targeted delivery is clinically beneficial since it can reduce the total amount of drug required for therapeutic benefit and reduce toxicity to bystander cells.
According to some embodiments, the present invention is further based on the surprising finding that the internalization of the targeted particles and not endosome escape is a fundamental event that takes place as early as one hour after systemic administration, that determine tLNPs efficacy. Thus, contrast to the belief that an obstacle for effective gene silencing by siRNA delivery systems resides in siRNA endosome escape, the findings provided herein demonstrate that the internalization of the siRNA is a bottleneck of leukocytes targeted siRNA delivery.
According to some embodiments, as further exemplified herein, the targeted particles disclosed herein can be advantageously administered systemically (for example, by intravenous administration) to result in efficient binding and uptake into the targeted leukocytes (such as, for example, CD4+T lymphocytes, MCL cells), in several relevant anatomical sites, including, for example, the spleen, inguinal lymph nodes, blood and the bone marrow.
According to some embodiments, the particles disclosed herein comprise a robust and scalable ionizable lipid-based particles system. According to some embodiments, the particles disclosed herein incorporate a plurality of lipids, including fusogenic ionizable lipids (such as, DLin-MC3-DMA, DLinDMA, DLin-KC2-DMA), PEG and maleimide derivatives/moieties, and are further coated/conjugated to targeting antibodies (such as monoclonal antibodies) aimed at specific antigens of the desired leukocyte to be targeted (such as, for example, a T cell surface CD4 receptor, CD8 receptor, CD3 receptor, CD25, CD47, CD147, CD117, CD38 (for B-cells), integrin 7 (for B-cells), and the like) Each possibility is a separate embodiment.
According to some embodiments, the disclosed targeted particles allows the specific targeted delivery of nucleic acid molecules, such as inhibitory RNA molecules to a target leukocyte, to exert a downstream effect on the specific leukocyte sub-type. In some exemplary embodiments, the inhibitory RNA molecules can be used to induce killing of the target cell and/or modulate the fate of the cells, depending on the target gene to be targeted by the inhibitory nucleic acid molecules.
According to some exemplary embodiments, the lipid-based particles may be decorated with a monoclonal antibody against CD38, which is expressed on Human diseased B cells. By targeting such cells with the targeted lipid particles and by selective inhibition of a cell cycle regulator, such as, Cyclin D1, expressed on several types of the hematological malignancies (such as mantle cell lymphoma, and multiple myeloma), death of the specific cell population (and hence the malignancy) is induced.
According to some embodiments, the targeting moiety may include any type of molecule capable of specifically recognize and interact/bind with cell surface antigens whose expression is restricted to or enriched on specific cell. In some embodiments, the targeting moiety may be selected from, but not limited to: antibodies, peptides, ligands, ligand-mimic, agonists and/or antagonists. In some embodiments, the targeting moiety may be any type of antibody, or a fragment thereof. In some embodiments, the targeting antibody is a monoclonal antibody.
According to some embodiments, there is provided a targeted particle for delivery of a nucleic acid to leukocyte cell, the particle comprising a lipid mixture comprising cationic lipid, membrane stabilizing lipid and PEG-maleimide conjugated to a targeting moiety. In some embodiments, the particles encapsulate nucleic acid molecule.
According some embodiments, there is provided a targeted particle for delivery of a nucleic acid to leukocyte cell, the particle comprising: a) a lipid mixture comprising cationic lipid, membrane stabilizing lipid and PEG-maleimide conjugated to a targeting moiety; and b) nucleic acid molecules encapsulated within the particle.
In some embodiments, the particle is for targeted delivery of a nucleic acid to primary lymphocytes. In some embodiments, the lymphocytes are selected from B-cells and T-cells. In some embodiments, the lymphocytes are B-cells. In some embodiments, the lymphocytes are T-cells.
In some embodiments, the targeting moiety is configured to specially target a leukocyte. In some embodiments, the targeting moiety is configured to specifically recognize an antigen expressed by said leukocyte. In some embodiments, the targeting moiety is selected from an antibody, a peptide and/or a ligand. In some embodiments, the targeting moiety comprises an antibody or a fragment thereof. In some embodiments, the antibody is anti-CD-38 antibody. In some embodiments, the targeting antibody is selected from anti-CD-antibody, anti CD8 antibody and anti-CD3 antibody. Each possibility is a separate embodiment. In some embodiments, the targeting antibody is anti-CD4 antibody. In some embodiments, the targeting antibody is anti-CD8 antibody. In some embodiments, the targeting antibody is anti-CD3 antibody.
In some embodiments, the nucleic acid comprises an interfering RNA, selected from, siRNA, miRNA, shRNA, and antisense RNA, modified forms thereof or combinations thereof.
In some embodiments, the cationic lipid may be selected from: DLinDMA, DLin-MC3-DMA, DLin-KC2-DMA, N,N-dimethyl-N′,N′-di[(9Z, 12Z)-octadeca-9,12-dien-1-yl]ethane-1,2-diamine, Di-oleyl-succinyl-serinyl-tobramycin, Di-oleyl-adipyl-tobramycin, Di-oleyl-suberyl-tobramycin, Di-oleyl-sebacyl-tobramycin, Di-oleyl-dithioglycolyl-tobramycin, monocationic lipid N-[1-(2,3-Dioleoyloxy)]-N,N,N-trimethylammonium propane (DOTAP), BCAT O-(2R-1,2-di-O-(1′Z, 9′Z-octadecadienyl)-glycerol)-3-N-(bis-2-aminoethyl)-carbamate, BGSC (Bis-guanidinium-spermidine-cholesterol), BGTC (Bis-guanidinium-tren-cholesterol), CDAN (N′-cholesteryl oxycarbony 1-3,7-diazanonane-1,9-diamine), CHDTAEA (Cholesteryl hemidithiodiglycolyl tris(amino(ethyl)amine), DCAT (0-(1,2-di-O-(9′Z-octadecanyl)-glycerol)-3-N-(bis-2-aminoethyl)-carbamate), DC-Chol (3β[N—(N′, N′-dimethylaminoethane)-carbamoyl] cholesterol), DLKD (O,O′-Dilauryl N-lysylaspartate), DMKD (O,O′-Dimyristyl N-lysylaspartate), DOG (Diolcylglycerol, DOGS (Dioctadecylamidoglycylspermine), DOGSDSO (1,2-Dioleoyl-sn-glycero-3-succinyl-2-hydroxyethyl disulfide ornithine), DOPC (1,2-Dioleoyl-sn-glycero-3-phosphocholine), DOPE (1,2-Dioleoyl-sn-glycerol-3-phosphoethanolamine, DOSN (Dioleyl succinyl ethylthioneomycin), DOSP (Dioleyl succinyl paromomycin), DOST (Dioleyl succinyl tobramycin), 1,2-Uiolcoyl-3-trimethyl ammoniopropane, DOTMA (N′[1-(2,3-Dioleyloxy)propyl]-N,N,N-trimethylammonium chloride), DPPES (Di-palmitoyl phosphatidyl ethanolamidosperminc), DDAB and DODAP, or any combination thereof. Each possibility is a separate embodiment.
In some embodiments, the cationic lipid is selected from ionizable lipids, such as, for example, DLinDMA, DLin-MC3-DMA, DLin-KC2-DMA, Di-oleyl-succinyl-serinyl-tobramycin, Di-oleyl-adipyl-tobramycin, Di-oleyl-suberyl-tobramycin, Di-oleyl-sebacyl-tobramycin, N,N-dimethyl-N′,N′-di[(9Z, 12Z)-octadeca-9,12-dien-1-yl] ethane-1,2-diamine and Di-oleyl-dithioglycolyl-tobramycin, or any combination thereof. Each possibility is a separate embodiment.
In some embodiments, the membrane-stabilizing lipid is selected from the group consisting of cholesterol, phospholipids (such as, phosphatidylcholine (PC)), cephalins, sphingolipids and glycoglycerolipids
In some embodiments, the lipids may further include phosphatidylamine selected from: 1,2-dilauroyl-L-phosphatidyl-ethanolamine (DLPE), 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE) 1,2-Diphytanoyl-sn-glycero-3-phosphoethanolamine (DPhPE) 1,3-Dipalmitoyl-sn-glycero-2-phosphoethanolamine (1,3-DPPE) 1-Palmitoyl-3-oleoyl-sn-glycero-2-phosphoethanolamine (1,3-POPE), Biotin-Phosphatidylethanolamine, 1,2-Dimyristoyl-sn-glycero-3-phosphoethanolamine (DMPE), 1,2-Distearoyl-sn-glycero-3-phosphoethanolamine (DSPE), and Dipalmitoylphosphatidylethanolamine (DPPE).
In some embodiments, the particle further include one or more PEG derivatives. In some embodiments, the additional PEG derivative is selected from: DMG-PEG, PEG-cDMA, 3-N-(-methoxy poly(ethylene glycol)2000)carbamoyl-1,2-dimyristyloxy-propylamine; PEG-cDSA, 3-N-(-methoxy poly(ethylene glycol)2000)carbamoyl-1,2-distearyloxy-propylamine, PEG-Amine, DSPE-PEG, or combinations thereof.
In some embodiments, the maleimide moiety is conjugated to a PEG derivative.
In some embodiments, the lipid mixture comprises DLin-MC3-DMA, cholesterol, DSPC, PEG-DMG and DSPE-PEG-maleimide. In some embodiments, the lipid mixture comprises DLinDMA, cholesterol, DSPC, PEG-DMG and DSPE-PEG-maleimide. In some embodiments, the lipid mixture comprises DLinKC2DMA, cholesterol, DSPC, PEG-DMG and DSPE-PEG-maleimide.
In some embodiments, the percentage of encapsulation of the nucleic acid is over 90%.
In some embodiments, there is provided a composition comprising a plurality of the targeted particles. In some embodiments, there is provided a composition comprising a plurality of the targeted particles encapsulating nucleic acid molecule(s). In some embodiments, there is provided a pharmaceutical composition comprising the plurality of particles in a dosage form suitable for administration via a route selected from oral and parenteral. In some embodiments, the administration is systemic.
According to some embodiments, there is provided a method for treating a leukocyte associated disease, comprising the step of administering to a subject in need thereof a pharmaceutical composition comprising the targeted particles and suitable nucleic acid molecules encapsulated therein. In some embodiments, the leukocyte associated disease is cancer. In some embodiments, the leukocyte associated disease is blood cancer. In some embodiments, the blood cancer is selected from lymphoma, leukemia and multiple myeloma. In some embodiments, the cancer is lymphoma. In some embodiments, the lymphoma is selected from B-cell lymphoma and T-cell lymphoma. In some embodiments, the B-cell lymphoma is selected from Hodgkin's lymphoma and non-Hodgkin's lymphoma. In some embodiments, the B-cell lymphma is selected from Burkitt lymphoma, chronic lymphocytic leukemia/small lymphocytic lymphoma (CLL/SLL), diffuse large B-cell lymphoma, follicular lymphoma, marginal-zone B-cell lymphoma, Nodal marginal zone B cell lymphoma (NMZL), Splenic marginal zone lymphoma (SMZL), Intravascular large B-cell lymphoma, Primary effusion lymphoma, Lymphomatoid granulomatosis, Primary central nervous system lymphoma, ALK-positive large B-cell lymphoma, Plasmablastic lymphoma and mantle cell lymphoma (MCL). In some embodiments, the lymphoma is Mantle cell lymphoma (MCL).
In some embodiments, the T-cell lymphoma is selected from: Peripheral T-cell lymphoma, Anaplastic large cell lymphoma, Angioimmunoblastic Lymphoma, Cutaneous T-cell lymphoma, Adult T-cell Leukemia/Lymphoma (ATLL), Blastic NK-cell Lymphoma, Enteropathy-type T-cell lymphoma, Hematosplenic gamma-delta T-cell Lymphoma, Lymphoblastic Lymphoma, Nasal NK/T-cell Lymphomas and Treatment-related T-cell lymphomas. In some embodiments, for treating the leukocyte associated disease, the siRNA encapsulated within the particles is siRNA against a cell cycle regulator. In some embodiments, the cell cycle regulator may be selected from: Polo-like Kinase 1 (PLK), Cyclin D1, CHK1, Notch pathway genes, PDGFRA, EGFRvIII, PD-L1, RelB, STAT1, STAT3, MCL1, CKAP5, RRM1, SF3A1 and CDK11B, and the like, or combinations thereof. In some embodiments, the cell cycle regulator is Cyclin D1 (CycD1).
According to some embodiments, there is provided use of a pharmaceutical composition for treating a leukocyte-associated disease, the composition comprising: a) targeted particles for delivery of a nucleic acid to a leukocyte, the particle comprising a lipid mixture comprising cationic lipid, membrane stabilizing lipid and PEG-maleimide conjugated to a targeting moiety; and b) nucleic acid encapsulated within the particle. In some embodiments, the pharmaceutical compositions comprises a plurality of particles.
According to some embodiments, there is provided use of a pharmaceutical composition for treating a leukocyte-associated disease, the composition comprising targeted particle for delivery of a nucleic acid to a leukocyte, the particle comprising: a) a lipid mixture comprising cationic lipid, membrane stabilizing lipid and PEG-maleimide conjugated to a targeting moiety; and b) nucleic acid encapsulated within the particle.
In some embodiments, the leukocyte-associated disease is cancer. In some embodiments, the cancer is lymphoma. In some embodiments, the lymphoma is Mantle cell lymphoma (MCL).
In some embodiments, the nucleic acid is siRNA. In some embodiments, the siRNA is directed against a cell cycle regulator. In some embodiments, the cell cycle regulator is Cyclin D1.
In addition to the exemplary aspects and embodiments described above, further aspects and embodiments will become apparent by reference to the figures and by study of the following detailed description.
Exemplary embodiments are illustrated in referenced figures. Dimensions of components and features shown in the figures are generally chosen for convenience and clarity of presentation and are not necessarily shown to scale. The figures are listed below.
P<10-4; One-way ANOVA test with Bonferroni correction);
To facilitate an understanding of the present invention, a number of terms and phrases are defined below. It is to be understood that these terms and phrases are for the purpose of description and not of limitation, such that the terminology or phraseology of the present specification is to be interpreted by the skilled artisan in light of the teachings and guidance presented herein, in combination with the knowledge of one of ordinary skill in the art.
As referred to herein, the terms “nucleic acid”, “nucleic acid molecules” “oligonucleotide”, “polynucleotide”, and “nucleotide” may interchangeably be used herein.
The terms are directed to polymers of deoxyribonucleotides (DNA), ribonucleotides (RNA), and modified forms thereof in the form of a separate fragment or as a component of a larger construct, linear or branched, single stranded, double stranded, triple stranded, or hybrids thereof. The term also encompasses RNA/DNA hybrids. The polynucleotides may include sense and antisense oligonucleotide or polynucleotide sequences of DNA or RNA. The DNA or RNA molecules may be, for example, but not limited to: complementary DNA (cDNA), genomic DNA, synthesized DNA, recombinant DNA, or a hybrid thereof or an RNA molecule such as, for example, mRNA, shRNA, siRNA, miRNA, Antisense RNA, and the like. Each possibility is a separate embodiment. The terms further include oligonucleotides composed of naturally occurring bases, sugars, and covalent internucleoside linkages, as well as oligonucleotides having non-naturally occurring portions, which function similarly to respective naturally occurring portions.
The terms “polypeptide,” “peptide” and “protein” are used interchangeably herein to refer to a polymer of amino acid residues. The terms apply to amino acid polymers in which one or more amino acid residue is an artificial chemical analogue of a corresponding naturally occurring amino acid, as well as to naturally occurring amino acid polymers.
The term “antigen” as used herein refers to a molecule or a portion of a molecule capable of being specifically bound by an antibody. An antigen may have one or more epitopes. In some embodiments, the antigen is a protein specifically expressed by a specific cell. In some embodiments, the antigen is a membranous protein. In some embodiments, the antigen is expressed on the exterior membrane of a cell. In some embodiments, the antigen is a cell surface protein. In some embodiments, the antigen is a cell surface receptor.
The term “antibody” is used in the broadest sense and includes monoclonal antibodies (mAb), including full length or intact monoclonal antibodies, polyclonal antibodies, multivalent antibodies, multi-specific antibodies (e.g., bi-specific antibodies), and antibody fragments long enough to exhibit the desired binding/recognizing activity. An “Antibody fragments” comprise a portion of an intact antibody, generally including an antigen binding site of the intact antibody and thus retaining the ability to bind an antigen.
The term “targeting moiety” is directed to any type of molecule capable of specifically recognizing and interact/bind with cell surface antigens whose expression is restricted to or enriched on specific cell. In some embodiments, the targeting moiety is selected from, but not limited to: antibodies, peptides, ligands, ligand-mimic, agonists and/or antagonists. In some embodiments, the targeting moiety may be any type of antibody, or a fragment thereof. In some embodiments, the targeting antibody is a monoclonal antibody.
The term “construct”, as used herein, refers to an artificially assembled or isolated nucleic acid molecule which may include one or more nucleic acid sequences, wherein the nucleic acid sequences may include coding sequences (that is, sequence which encodes an end product), regulatory sequences, non-coding sequences, or any combination thereof. The term construct includes, for example, vector but should not be seen as being limited thereto.
“Expression vector” refers to constructs that have the ability to incorporate and express heterologous nucleic acid fragments (such as, for example, DNA), in a foreign cell. In other words, an expression vector comprises nucleic acid sequences/fragments (such as DNA, mRNA, tRNA, rRNA), capable of being transcribed. Many prokaryotic and eukaryotic expression vectors are known and/or commercially available. Selection of appropriate expression vectors is within the knowledge of those having skill in the art. In some exemplary embodiments, the expression vector may encode for a double stranded RNA molecule in the target site.
The term “expression”, as used herein, refers to the production of a desired end-product molecule in a target cell. The end-product molecule may include, for example an RNA molecule; a peptide or a protein; and the like; or combinations thereof.
As used herein, the terms “introducing” and “transfection” may interchangeably be used and refer to the transfer of molecules, such as, for example, nucleic acids, polynucleotide molecules, vectors, and the like into a target cell(s), and more specifically into the interior of a membrane-enclosed space of a target cell(s). The molecules can be “introduced” into the target cell(s) by any means known to those of skill in the art, for example as taught by Sambrook et al. Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, New York (2001), the contents of which are incorporated by reference herein. Means of “introducing” molecules into a cell include, for example, but are not limited to: heat shock, calcium phosphate transfection, PEI transfection, electroporation, lipofection, transfection reagent(s), viral-mediated transfer, and the like, or combinations thereof. The transfection of the cell may be performed on any type of cell, of any origin, such as, for example, human cells, animal cells, plant cells, virus cell, and the like. The cells may be selected from isolated cells, tissue cultured cells, cell lines, cells present within an organism body, and the like.
As referred to herein, the term “target site” refers to the location in which the nucleic acid is directed to and/or the site in which the nucleic acid is to exert its biological effect. In some exemplary embodiments, the target site is a cell that may be selected from, but not limited to: a culture cell (primary cell or cell-line derived cell), and a cell within an organism body; a tissue, an organ, a microorganism (such as, for example, virus, bacteria, parasite), and the like. The organism may be any organism, such as, but not limited to: a mammal, such as human or an animal, an animal which is not a mammal (such as, for example, avian, Fish, and the like), and the like. In some exemplary embodiments, the target site is a subcellular location or cellular organelle (such as, for example, nucleus, cytoplasm, and the like). In some embodiments, the target site is a leukocyte, or a subset thereof. In some embodiments, the target site is a specific T-cell. In some embodiments, the target site is a specific B-cell. In some embodiments, the target site is a lymphoma.
The term “treating” and “treatment” as used herein refers to abrogating, inhibiting, slowing or reversing the progression of a disease or condition, ameliorating clinical symptoms of a disease or condition or preventing the appearance of clinical symptoms of a disease or condition. The term “preventing” is defined herein as barring a subject from acquiring a disorder or disease or condition.
The term “treatment of cancer” is directed to include one or more of the following: a decrease in the rate of growth of the cancer (i.e. the cancer still grows but at a slower rate); cessation of growth of the cancerous growth, i.e., stasis of the tumor growth, and, the tumor diminishes or is reduced in size. The term also includes reduction in the number of metastases, reduction in the number of new metastases formed, slowing of the progression of cancer from one stage to the other and a decrease in the angiogenesis induced by the cancer. In most preferred cases, the tumor is totally eliminated. Additionally included in this term is lengthening of the survival period of the subject undergoing treatment, lengthening the time of diseases progression, tumor regression, and the like. In some embodiments, the cancer is a blood cancer.
The term “Leukocytes” is directed to white blood cells (WBCs), produced and derived from a multipotent, hematopoietic stem cell in the bone marrow. The white blood cells have nuclei, and types of white blood cells can be classified in into five main types, including, neutrophils, eosinophils, basophils, lymphocytes, and monocytes, based on functional or physical characteristics. The main types may be classified into subtypes. For example, lymphocytes include B cells, T cells, and NK cells. B-cells, for example, release antibodies and assist activation of T cells. T cells, for example, can be classified to several subtypes, including: T-helper cells (CD4+Th) which activate and regulate T and B cells; cytotoxic T cells (CD8+) that can target and kill virus-infected cells and tumor cells; Gamma-delta T cells (γδ T cells) which can bridge between innate and adaptive immune responses and be involved in phagocytosis; and Regulatory (suppressor) T cells which modulate the immune system, maintain tolerance to self-antigens, and abrogate autoimmune conditions.
As used herein, the term “LNP” is directed to lipid-based nanoparticles. The lipid based particles may be targeted, when conjugated/attached/associated with a targeting moiety, such as, an antibody. In some embodiments, the particles are nano-particles. In some embodiments, the term “tLNP” is directed to the lipids based particles which are attached/coated/conjugated/linked to a targeting moiety. In some embodiments, the LNP encapsulates a nucleic acid.
The terms “maleimide” and “maleimide moiety” may interchangeably be used and are directed to a chemical compound having the formula H2C2(CO)2NH. In some embodiments, the maleimide may be bound/conjugated/linked to another derivative, such as, PEG derivative. In some embodiments, a maleimide moiety may include two maleimide groups connected by the nitrogen atoms (Bismaleimides). In some embodiments, stable carbon-sulfur bond can be formed between the maleimide (the double bond thereof) and thiol group(s).
The term “plurality” as used herein is directed to include more than one component.
As used herein, the term “about” refers to +/−10%.
According to some embodiments of the present invention, there is provided a targeted lipid particle for delivery of a nucleic acid to a leukocyte, which comprises a lipid phase (membrane/mixture) comprising a plurality of lipids (including cationic lipid(s), membrane stabilizing lipid(s) and optionally additional lipids, such as, but limited to, ionized lipids and/or phosphatidylethanolamine(s)), one or more PEG-Amine derivatives and maleimide, conjugated to a targeting moiety. In some embodiments, the particles further include (encapsulate) a nucleic acid. In some embodiments, the maleimide is conjugated to a lipid, via PEG derivative. In some embodiments, the disclosed particles are used as an efficient delivery system (both in-vitro and in-vivo) to deliver the nucleic acid molecule to a target leukocyte, such as, a lymphocyte including B-cells and T-cells primary lymphocytes. The target site may be an in-vivo or in-vitro target site.
According to some embodiments, there is provided a cationic particle for delivery of a nucleic acid, comprising: a lipid membrane/mixture comprising a cationic lipid, a membrane stabilizing lipid and maleimide conjugated to a targeting moiety; and a nucleic acid encapsulated/carried within the particles. In some embodiments, the targeting moiety is at least partially coating the external surface of the particles. In some embodiments, the targeting moiety is configured to recognize, target and/or bind a specific antigen or epitope of the target leukocyte, thereby allowing targeting of the particle to the target cell.
According to additional embodiments, the present invention provides a composition comprising a plurality of particles, the particles comprising a lipid phase/membrane/mixture comprising a plurality of lipids comprising at least a cationic lipid, a membrane stabilizing lipid and at maleimide derivative, the maleimide derivative is conjugated to a targeting moiety (such as a targeting antibody); and further encapsulate/carry a nucleic acid within the particles. In some embodiments, the particles further include one or more PEG-derivatives.
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According to some exemplary embodiments, the plurality of lipids of the lipid particles may be of natural or synthetic source and may be selected from, but not limited to: cationic lipids, phosphatidylethanolamines, ionized lipids, membrane stabilizing lipids, phospholipids, and the like, or combinations thereof. Each possibility is a separate embodiment.
In some embodiments, the cationic lipid may be selected from ionizable lipid or permanently charged amine cationic lipids.
In some embodiments, the cationic lipids may be synthetic cationic lipids.
In some embodiments, the cationic lipids may be selected from: DLinDMA, DLin-MC3-DMA, DLin-KC2-DMA, Di-oleyl-succinyl-serinyl-tobramycin, Di-oleyl-adipyl-tobramycin, Di-oleyl-suberyl-tobramycin, Di-oleyl-sebacyl-tobramycin, N,N-dimethyl-N′,N′-di[(9Z, 12Z)-octadeca-9,12-dien-1-yl] ethane-1,2-diamine, Di-oleyl-dithioglycolyl-tobramycin, monocationic lipid N-[1-(2,3-Dioleoyloxy)]-N,N,N-trimethylammonium propane (DOTAP), BCAT O-(2R-1,2-di-O-(1′Z, 9′Z-octadecadienyl)-glycerol)-3-N-(bis-2-aminoethyl)-carbamate, BGSC (Bis-guanidinium-spermidine-cholesterol), BGTC (Bis-guanidinium-tren-cholesterol), CDAN (N′-cholesteryl oxycarbony 1-3,7-diazanonane-1,9-diamine), CHDTAEA (Cholesteryl hemidithiodiglycolyl tris(amino(ethyl)amine), DCAT (O-(1,2-di-O-(9′Z-octadecanyl)-glycerol)-3-N-(bis-2-aminoethyl)-carbamate), DC-Chol (3β[N—(N′, N′-dimethylaminoethane)-carbamoyl] cholesterol), DLKD (0,0′-Dilauryl N-lysylaspartate), DMKD (0,0′-Dimyristyl N-lysylaspartate), DOG (Diolcylglycerol, DOGS (Dioctadecylamidoglycylspermine), DOGSDSO (1,2-Dioleoyl-sn-glycero-3-succinyl-2-hydroxyethyl disulfide ornithine), DOPC (1,2-Dioleoyl-sn-glycero-3-phosphocholine), DOPE (1,2-Dioleoyl-sn-glycerol-3-phosphoethanolamine, DOSN (Dioleyl succinyl ethylthioneomycin), DOSP (Dioleyl succinyl paromomycin), DOST (Dioleyl succinyl tobramycin), 1,2-Uiolcoyl-3-trimethyl ammoniopropane, DOTMA (N′[1-(2,3-Dioleyloxy)propyl]-N,N,N-trimethylammonium chloride), DPPES (Di-palmitoyl phosphatidyl ethanolamidosperminc), DDAB and DODAP, or any combination thereof. Each possibility is a separate embodiment.
In some exemplary embodiments, the cationic lipid may be selected from: DLinDMA, DLin-MC3-DMA, DLin-KC2-DMA, Di-oleyl-succinyl-serinyl-tobramycin, Di-oleyl-adipyl-tobramycin, Di-oleyl-suberyl-tobramycin, N,N-dimethyl-N′,N′-di[(9Z, 12Z)-octadeca-9,12-dien-1-yl] ethane-1,2-diamine, Di-oleyl-sebacyl-tobramycin and Di-oleyl-dithioglycolyl-tobramycin. Each possibility is a separate embodiment.
In some exemplary embodiments, the cationic lipid may be selected from:monocationic lipid N-[1-(2,3-Dioleoyloxy)]-N,N,N-trimethylammonium propane (DOTAP), BCAT O-(2R-1,2-di-O-(1′Z, 9′Z-octadecadienyl)-glycerol)-3-N-(bis-2-aminoethyl)-carbamate, BGSC (Bis-guanidinium-spermidine-cholesterol), BGTC (Bis-guanidinium-tren-cholesterol), CDAN (N′-cholesteryl oxycarbony 1-3,7-diazanonane-1,9-diamine), CHDTAEA (Cholesteryl hemidithiodiglycolyl tris(amino(ethyl)amine), DCAT (O-(1,2-di-O-(9′Z-octadecanyl)-glycerol)-3-N-(bis-2-aminoethyl)-carbamate), DC-Chol (3β[N—(N′, N′-dimethylaminoethane)-carbamoyl] cholesterol), DLKD (O,O′-Dilauryl N-lysylaspartate), DMKD (O,O′-Dimyristyl N-lysylaspartate), DOG (Diolcylglycerol, DOGS (Dioctadecylamidoglycylspermine), DOGSDSO (1,2-Dioleoyl-sn-glycero-3-succinyl-2-hydroxyethyl disulfide ornithine), DOPC (1,2-Dioleoyl-sn-glycero-3-phosphocholine), DOPE (1,2-Dioleoyl-sn-glycerol-3-phosphoethanolamine, DOSN (Dioleyl succinyl ethylthioneomycin), DOSP (Dioleyl succinyl paromomycin), DOST (Dioleyl succinyl tobramycin), 1,2-Uiolcoyl-3-trimethyl ammoniopropane, DOTMA (N′[1-(2,3-Dioleyloxy)propyl]-N,N,N-trimethylammonium chloride), DPPES (Di-palmitoyl phosphatidyl ethanolamidosperminc), DDAB and DODAP. Each possibility is a separate embodiment.
In some exemplary embodiments, the cationic lipid may be selected from: DLinDMA (1,2-dilinoleyloxy-3-dimethylaminopropane), DLin-MC3-DMA (heptatriaconta-6,9,28,31-tetraen-19-yl 4-(dimethylamino)butanoate), and DLin-KC2-DMA (2,2-dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane). Each possibility is a separate embodiment.
In some exemplary embodiments, the cationic lipid has a pKa in the range of about 6.5-7. In some embodiments, the cationic lipid is selected from, but not limited to: DLinDMA, (with lipid pKa of 6.8), DLin-MC3-DMA (with lipid pKa of 6.44) and DLin-KC2-DMA (with lipid pKa of 6.7), or combinations thereof. Each possibility is a separate embodiment.
In some embodiments, the membrane stabilizing lipids may be selected from, but not limited to: cholesterol, phospholipids (such as, for example, phosphatidylcholine (PC, such as, DSPC (1,2-distearoyl-sn-glycero-3-phosphocholine), DMPC, DPPC, DHPC and DLPC), phosphatidylethanolamine, phosphatidylinositol, phosphatidylserine, phosphatidylglycerol, diphosphatidylglycerols), cephalins, sphingolipids (sphingomyelins and glycosphingolipids), glycoglycerolipids, and combinations thereof. Each possibility is a separate embodiment.
In some embodiments, the Phosphatidylethanolamines may be selected from, but not limited to: 1,2-dilauroyl-L-phosphatidyl-ethanolamine (DLPE), 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE), 1,2-Diphytanoyl-sn-glycero-3-phosphoethanolamine (DPhPE) 1,3-Dipalmitoyl-sn-glycero-2-phosphoethanolamine (1,3-DPPE), 1-Palmitoyl-3-oleoyl-sn-glycero-2-phosphoethanolamine (1,3-POPE), Biotin-Phosphatidylethanolamine, 1,2-Dimyristoyl-sn-glycero-3-phosphoethanolamine (DMPE), Dipalmitoylphosphatidylethanolamine (DPPE), 1,2-Distearoyl-sn-glycero-3-phosphoethanolamine (DSPE) or combinations thereof. In some embodiments, the Phosphatidylethanolamines may be conjugated to a PEG-Amine derivative. Each possibility is a separate embodiment.
According to some embodiments, the particles (lipid phase thereof), may further include one or more PEG derivatives. In some embodiments, the PEG derivatives may be conjugated to one or more additional molecules, such as, a lipid. In some embodiments, the PEG derivative is selected from, but not limited to: PEG-DMG, cDMA 3-N-(-methoxy poly(ethylene glycol)2000)carbamoyl-1,2-dimyristyloxy-propylamine; PEG-cDSA, 3-N-(-methoxy poly(ethylene glycol)2000)carbamoyl-1,2-distearyloxy-propylamine, DSPE-PEG, PEG-maleimide, DSPE-PEG-maleimide, or combinations thereof. Each possibility is a separate embodiment.
In some embodiments, the maleimide derivative/moiety may be conjugated, attached or linked to a PEG-derivative, which may be by itself conjugated, linked and/or attached to a lipid.
According to some embodiments, the ratio between the various lipids in the particle may vary. In some embodiments, the ratio is a molar ratio. In some embodiments, the ratio is a weight ratio. In some embodiments, each of the lipid groups may be at molar ratio/a weight ratio of about 1%-99%.
According to some embodiments, the weight ratio between the nucleic acid and the lipid mixture may be adjusted so as to achieve maximal biological effect by the nucleic acid on the target site. In some embodiments, the ratio between the nucleic acid and the lipid phase may be 1:1. For example, the weight ratio between the nucleic acid and the lipid phase may be 1:2. For example, the weight ratio between the nucleic acid and the lipid phase may be 1:5. For example, the weight ratio between the nucleic acid and the lipid phase may be 1:10. For example, the weight ratio between the nucleic acid and the lipids phase may be 1:16. For example, the weight ratio between the nucleic acid and the lipid phase may be 1:20. In some embodiments, the weight ratio between the nucleic acid and the lipid phase is about 1:1 to 1:30 (w:w).
In some embodiments, the particles are nanoparticles. In some embodiments, the particles (including the nucleic acid encapsulated within) and the targeting moiety on the surface particles have a particle size (diameter) in the range of about 10 to about 500 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 10 to about 350 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 50 to about 250 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 10 to about 200 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 20 to about 200 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 50 to about 200 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 70 to about 140 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 75 to about 200 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 90 to about 200 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 100 to about 200 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 120 to about 200 nm. In some embodiments, the particles have a particle size (diameter) in the range of about 150 to about 200. In some embodiments, the particles have a particle size (diameter) in the range of about 50 to about 150 nm. In some embodiments, the particles have a particle size (diameter) in the range of over about 10 nm. In some embodiments, the particles have a particle size (diameter) of over about 20 nm. In some embodiments, the particles have a particle size (diameter) of over about 30 nm. In some embodiments, the particles have a particle size (diameter) of over about 40 nm. In some embodiments, the particles have a particle size (diameter) of over about 50 nm. In some embodiments, the particles have a particle size (diameter) of over about 60 nm. In some embodiments, the particles have a particle size (diameter) of over about 70 nm. In some embodiments, the particles have a particle size (diameter) of over about 80 nm. In some embodiments, the particles have a particle size (diameter) of over about 90 nm. In some embodiments, the particles have a particle size (diameter) of over about 100 nm. In some embodiments, the particles have a particle size (diameter) of over about 200 nm. In some embodiments, the particles have a particle size (diameter) of not more than about 500 nm. In some embodiments, the particles (including the nucleic acid encapsulated within) have a particle size (diameter) in the range of about 5 to about 200 nm. In some embodiments, the particles (including the nucleic acid encapsulated within) have a particle size (diameter) in the range of about 70 to about 140 nm. In some embodiments, the particles (including the nucleic acid encapsulated within) have a particle size (diameter) in the range of about 50 to about 60 nm. In some embodiments, the particles (including the nucleic acid encapsulated within) have a particle size (diameter) in the range of about 55 to about 58 nm. In some embodiments, the size is a hydro dynamic diameter.
According to exemplary embodiments, the particles may be comprised of a cationic lipid (such as, for example, DLinDMA, DLinMC3-DMA or DlinKC2-DMA), cholesterol, 1,2-Distearoyl-sn-glycero-3-phosphocholine (DSPC), PEG derivative (such as DMG-PEG) and PEG-maleimide conjugated to a lipid (such as DSPE-PEG-maleimide); at various mol:mol ratios, and further conjugated to a targeting moiety, wherein the targeting moiety is conjugated, linked, attached to the maleimide moiety. For example, the lipid phase may be comprised of: DLinMC3/DSPC/cholesterol/DMG-PEG/DSPE-PEG-Maleimide (mol/mol 50:10:38:1.5:0.5). For example, the lipid phase may be comprised of: DLinMC3-DMA/Chol/DSPC/DMG-PEG/DSPE-PEG-maleimide (mol/mol 50:38:10:1.95:0.05). For example, the lipid phase may be comprised of: DLinKC2-DMA/Chol/DSPC/DMG-PEG/DSPE-PEG-maleimide (mol/mol 50:38:10:1.95:0.05). For example, the lipid phase may be comprised of: DLinKC2-DMA/Chol/DSPC/DMG-PEG/DSPE-PEG-maleimide (mol/mol 45:30:23:1.5:0.5).
According to some embodiments, the lipid phase may comprise about 30-60% (mol:mol) cationic lipids. For example, the cationic lipid(s) may comprise about 40-50% (mol:mol) of the lipid phase.
According to some embodiments, the lipid phase may comprise about 20-70% (mol:mol) membrane stabilizing lipids. For example, the membrane stabilizing lipids may comprise about 40-60% of the lipid phase. In some embodiments, more than one type of membrane stabilizing lipid may be used in the lipid phase. For example, the membrane stabilizing lipid may include cholesterol (being about 30-50% (mol:mol) of the lipid phase), and a phospholipid (such as, for example, DSPC), that may be about 5-15% (mol:mol) of the lipid phase.
According to some embodiments, the lipid phase may comprise about 0.01-3% (mol:mol) of PEG-maleimide (optionally conjugated to a lipid). For example, the PEG-maleimide may comprise about 0.05-0.6% of the lipid mixture.
According to some embodiments, an additional PEG-derivative (conjugated to a lipid) may comprise about 0.5-10% of the lipid phase composition. For example, the additional PEG derivative may comprise about 1.5-3% of the lipid phase.
According to some embodiments, there is provided a method for the preparation of targeted particle(s) for delivery of a nucleic acid to leukocytes, the method comprising one or more of the steps of:
According to some exemplary embodiments, there is provided a method for the preparation of targeted particle(s) for delivery of a nucleic acid to leukocytes, the method comprising one or more of the steps of:
In some embodiments, the lipids are suspended in an acidic aqueous buffer, such as, ethanol. In some embodiments, the nucleic acid is in an acetate buffer solution.
In some embodiments, the nucleic acid may be mixed with the lipid mixture in a microfluidizer mixer to form particles encapsulating/carrying the nucleic acid.
In some embodiments, the targeting moiety may be manipulated prior to interacting with the lipid particles, for example, by reduction. In some exemplary embodiments, when the targeting moiety is an antibody, it reduced by a reducing agent, such as, DTT. In some embodiments, the targeting antibody is incubated with the particles after it has been reduced. In some embodiments, the thiolized targeting antibody is incubated with the particles to form a conjugate with the maleimide moiety.
According to some embodiments, the method for the preparation of the targeted particles may include various modifications to finely adjust the components of the composition, as well as the ratio between the components, so as to obtain the most effective composition. The modifications may include, for example, such parameters as, but not limited to: the specific lipids used for the formation of the lipid composition, the ratio between the lipids of the lipid compositions, the identity of the nucleic acid to be encapsulated, the ratio between the nucleic acid and the lipid composition, the specific targeting moiety used, the pH at which reactions are performed, the temperatures at which reactions are performed, the conditions at which the reactions are formed, the time length of various steps, and the like, or any combination thereof.
According to some embodiments, the method for the preparation of the particles of the present invention may beneficially result in uniformly distributed particle size.
According to some embodiments, the particles formed by the methods of the present invention may be lyophilized or dehydrated at various stages of formation.
According to some embodiments, the targeted particles of the present disclosure can be used in the treatment of various leukocytes-associated pathological conditions.
According to some embodiments, the particles may be administered as is. In some embodiments, the particles may be administered in a solution. In some embodiments, the particles may be formulated to a suitable pharmaceutical composition to be administered by any desired route of administration. Exemplary routes of administration include such routes as, but not limited to: topical, oral or parenteral. Depending on the intended mode of administration, the compositions used may be in the form of solid, semi-solid or liquid dosage forms, such, as for example, tablets, suppositories, pills, capsules, powders, liquids, suspensions, or the like, preferably in unit dosage forms suitable for single administration of precise dosages. The pharmaceutical compositions may include the cationic particles, a pharmaceutical acceptable excipient, and, optionally, may include other medicinal agents, pharmaceutical agents, carriers, adjuvants, and the like. It is preferred that the pharmaceutically acceptable carrier be one which is inert to the nucleic acid encapsulated within the particles and which has no detrimental side effects or toxicity under the conditions of use. In some embodiments, the administration is localized. In some embodiments, the administration is systemic.
In some embodiments, injectable formulations for parenteral administration can be prepared as liquid solutions or suspensions, solid forms suitable for solution or suspension in liquid prior to injection, or as emulsions. Suitable excipients are, for example, water, saline, dextrose, glycerol, ethanol or the like. In addition, if desired, the pharmaceutical compositions to be administered may also contain minor amounts of non-toxic auxiliary substances such as wetting or emulsifying agents, pH buffering agents and the like, such as for example, sodium acetate, sorbitan monolaurate, triethanolamine oleate, and the like. Aqueous injection suspensions may also contain substances that increase the viscosity of the suspension, including, for example, sodium carboxymethylcellulose, sorbitol, and/or dextran. Optionally, the suspension may also contain stabilizers. The parenteral formulations can be present in unit dose or multiple dose sealed containers, such as ampules and vials, and can be stored in a freeze-dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, such as, for example, water, for injections immediately prior to use. In some embodiments, parenteral administration includes intravenous administration.
In other embodiments, for oral administration, a pharmaceutically acceptable, non-toxic composition may be formed by the incorporation of any of the normally employed excipients, such as, for example, mannitol, lactose, starch, magnesium stearate, sodium saccharine, talcum, cellulose, sodium crosscarmellose, glucose, gelatin, sucrose, magnesium carbonate, and the like. Such compositions include solutions, suspensions, tablets, dispersible tablets, pills, capsules, powders, sustained release formulations and the like. Formulations suitable for oral administration can consist of liquid solutions such as effective amounts of the compound(s) dissolved in diluents such as water, saline, or orange juice; sachets, lozenges, and troches, each containing a predetermined amount of the active ingredient as solids or granules; powders, suspensions in an appropriate liquid; and suitable emulsions. Liquid formulations may include diluents such as water and alcohols, (such as, for example ethanol, benzyl alcohol, and the polyethylene alcohols), either with or without the addition of a pharmaceutically acceptable surfactant, suspending agents, or emulsifying agents.
In determining the dosages of the particles to be administered, the dosage and frequency of administration may be selected in relation to the pharmacological properties of the specific nucleic acids encapsulated within the particles.
In some embodiments, there is provided a composition, which include a plurality of particles, wherein the various particles may encapsulate a similar or different nucleic acid molecule (such as a similar or different type of molecule, a similar or different sequence of the nucleic acid, and the like, or combinations thereof).
In some exemplary embodiments, particles comprising a nucleic acid, such as, for example, siRNA, miRNA, shRNA, anti-sense RNA, and the like, may be used in the treatment of various leukocyte-associated conditions, depending on the identity of the nucleic acid, the specific target leukocyte, and the like. In some embodiments, the nucleic acid encapsulated within the particles may be a nucleic acid capable of inducing silencing of a target gene. In some embodiments, the target gene may be any gene, the expression of which is related to the condition to be treated. In some embodiments, the target gene may be a gene selected from, but not limited to: growth factors (such as EGFR, PDGFR), genes related to angiogenesis pathways (such as VEGF, Integrins), genes involved in intracellular signaling pathways and cell cycle regulation (such as PI3K/AKT/mTOR, Ras/Raf/MAPK, PDK1, CHK1, PLK1, Cyclins, STAT1, STAT3, MCL1, CKAP5, RRM1, SF3A1 and CDK11B). In some embodiments, a combination of nucleic acids, each having one or more targets may be encapsulated within the particles. Each possibility is a separate embodiment.
According to some embodiments, exemplary leukocyte-associated conditions that may be treated by the targeted particles may be selected from, but not limited to: various types of cancer, various infections (such as, for example, viral infection, bacterial infection, fungal infection, and the like), autoimmune diseases, neurodegenerative diseases, inflammations, and the like.
In some exemplary embodiments, the targeted particles comprising a nucleic acid (such as, siRNA or miRNA, shRNA, anti-sense RNA, modified mRNA, guided RNA, or the like), may be used for the treatment of cancer.
In some embodiments, cancer is a disorder in which a population of cells has become, in varying degrees, unresponsive to the control mechanisms that normally govern proliferation and differentiation. In some embodiments, the cancer is a blood cancer. Non-limiting examples of blood cancers are lymphoma, leukemia and multiple myeloma. Lymphomas may be divided into two categories: Hodgkin lymphoma and non-Hodgkin lymphoma. Most non-Hodgkin lymphomas are B-cell lymphomas, that grow quickly (high-grade) or slowly (low-grade). There are about 14 types of B-cell non-Hodgkin lymphomas, including, but not limited to: Burkitt lymphoma, chronic lymphocytic leukemia/small lymphocytic lymphoma (CLL/SLL), diffuse large B-cell lymphoma, follicular lymphoma, marginal-zone B-cell lymphoma, Nodal marginal zone B cell lymphoma (NMZL), Splenic marginal zone lymphoma (SMZL), Intravascular large B-cell lymphoma, Primary effusion lymphoma, Lymphomatoid granulomatosis, Primary central nervous system lymphoma, ALK-positive large B-cell lymphoma, Plasmablastic lymphoma and mantle cell lymphoma (MCL). Each possibility is a separate embodiment. T-cell lymphomas include such cancers as, but not limited to: Peripheral T-cell lymphoma, Anaplastic large cell lymphoma, Angioimmunoblastic Lymphoma, Cutaneous T-cell lymphoma, Adult T-cell Leukemia/Lymphoma (ATLL), Blastic NK-cell Lymphoma, Enteropathy-type T-cell lymphoma, Hematosplenic gamma-delta T-cell Lymphoma, Lymphoblastic Lymphoma, Nasal NK/T-cell Lymphomas, Treatment-related T-cell lymphomas, and the like. Each possibility is a separate embodiment.
In some exemplary embodiments, the nucleic acid that may be used for the treatment of cancer are directed against a target gene, which is involved in the regulation of cell cycle. In some exemplary embodiments, the target gene may be Polo-like Kinase 1 (PLK), Cyclin D1, CHK1, Notch pathway genes, PDGFRA, EGFRvIII, PD-L1, RelB, STAT1, STAT3, MCL1, CKAP5, RRM1, SF3A1 and CDK11B, and the like, or combinations thereof. Each possibility is a separate embodiment.
According to some embodiments the particles disclosed herein are particularly useful to specifically target and silence gene expression in leukocytes cells, such as, B-cells and T-cells. In some embodiments, the particles may be administered systemically.
In some exemplary embodiments, the leukocytes cells are CD4+ T cells. As exemplified herein, the targeted NLPs can effectively silence an exemplary gene, CD45, in CD4+ T cells at much lower doses (mg/Kg body) than any non-targeted system to leukocytes. In some embodiments, this silencing is detected in all the major tissues that harbor T cells (blood, spleen, bone marrow and inguinal lymph nodes). In some embodiments, CD45 silencing was restricted to the CD4+ T cells and was not observed in other lymphocyte subsets. In some embodiments, the decrease in CD45 expression is at the protein and/or mRNA levels.
According to some embodiments, there is a CD4+ T cell subset in which uptake of the tLNPs was less efficient. According to some embodiments, and as exemplified herein two distinct CD4+ T cells populations that differ in their tLNPs uptake ability can be identified. Distinct population of CD4 T cells (CD4low) was permissive for tLNPs internalization followed by siRNA cytoplasmic diffusion, while the remaining of the CD4+ cells harbor tLNPs (CD4high) on their surface without proceeding to internalization.
According to some embodiments, tLNPs internalization and not endosome escape is a central event that define tLNPs efficacy. According to some embodiments, the internalization of the tLNPs take place within a short time (for example, in the range of 30-120 minutes) post systemic administration of the particles.
According to some embodiments, there is provided a method for the treatment of leukocyte-related cancer, comprising the step of administration to a subject in need thereof the targeted particles of the present disclosure or a pharmaceutical compositions comprising the same. In some embodiments, there is provided the use of the particles of the present disclosure or a pharmaceutical composition comprising the same, for the treatment of leukocyte-related cancer. In some embodiments, the particles encapsulate a nucleic acid capable of inducing growth inhibition or killing of the cancer cells, thereby treating the leukocyte-related cancer.
According to some embodiments and as exemplified herein, Mantle Cell Lymphoma (MCL) is used herein as a prototypic blood cancer for demonstrating the targeting and therapeutic abilities of the particles disclosed herein. MCL is an aggressive B-cell lymphoma that overexpresses cyclin D1 with relatively poor prognosis. Thus, down-regulation of cyclin D1 using RNA interference (RNAi) can be used as a therapeutic approach to this malignancy. According to some embodiments, and as exemplified herein, targeted lipid-based nanoparticles (LNPs) coated with anti-CD38 monoclonal antibodies are specifically targeted to and taken up by human MCL cells in the bone marrow of xenografted mice. According to some embodiments, when carrying siRNAs against cyclin D1, CD38-targeted LNPs induce gene silencing in MCL cells to result in prolonged survival of tumor-bearing mice with no observed adverse effects.
According to some embodiments, there is provided a method of treating MCL, by administering an effective amount of the targeted particles of the present invention (or a pharmaceutical composition comprising the same), whereby the targeted lipid based particles are coated (conjugated) to an anti-CD38 antibody (such as a monoclonal antibody). In some embodiments, the particles encapsulate/carry a nucleic acid molecule capable of killing or inhibit growth of the MCL cells. In some embodiments, the nucleic acid molecule encapsulated within the particles is an siRNA. In some embodiments, the siRNA is directed against a cell cycle regulator. In some embodiments, the siRNA is directed against cyclin D1.
According to some embodiments, there is provided a use of the targeted particles of the present invention for treating MCL, the particles (or a pharmaceutical composition comprising the same) are coated/conjugated to an anti-CD38 antibody, such as, an anti-CD38 monoclonal antibody. In some embodiments, the targeted particles carry/encapsulate an siRNA molecule directed against a cell cycle regulator, such as, Cyclin D1.
According to some embodiments, and as exemplified herein, CD38 is a suitable target for antibody-mediated delivery of therapeutic siRNAs to MCL. LNPs-siRNA coated with an anti-CD38 monoclonal antibody (αCD38 mAb) exhibit specific MCL binding in vitro (in MCL cell lines and MCL primary lymphomas) and in vivo (in mice xenografted with a human MCL cell line). CD38-targeted LNPs (αCD38-LNPs) entrapping siRNA against cycD1 (siCycD1) are specifically taken up by MCL xenografts. αCD38-LNPs-siCycD1 induced gene silencing and suppressed tumor cell growth in vitro, and prolonged the survival of MCL-bearing mice.
According to some embodiments, αCD38-LNPs-siRNA can be used for treating MCL and other CD38-expressing hematological malignancies. According to some embodiments, there is provided a method of treating CD38-expressing hematological malignancies, the method comprising administering the αCD38-LNPs-siRNAs or pharmaceutical compositions comprising the same to a subject in need thereof.
According to some embodiments, αCD38-LNPs-siRNA that encapsulate siRNAs against cycD1 can prolong the survival subjects afflicted with MCL.
According to some embodiments, to achieve specificity for targeting MCL cells, the LNPs can be coated with an anti-CD38 mAb (such as, clone THB-7). In some embodiments, such mAb recognizes the surface protein CD38, which is found on immature leukocyte precursors, but overexpressed in MCL tumor cells and other B-cell hematological malignancies, such as in CLL (where it correlates with poor prognosis) and multiple myeloma. According to some embodiments, the THB-7 αCD38 mAbs can be used as a MCL-targeting moiety without displaying significant anti-tumor activity by themselves. In some embodiments, an anti-CD38 antibody which displays an anti-tumor effect by itself, may be used as a targeting moiety for the particles, in which case, a synergistic effect on the targeted cells may be observed. In some embodiments, an anti-CD38 antibody can mediate active delivery of siRNAs into the cytoplasm of targeted cells.
In some embodiments, αCD38-LNPs-siRNA may be internalized and induce gene silencing in various CD38-implicated diseases.
In some embodiments the αCD38-antibody is a THB-7 monoclonal antibody.
According to some embodiments, systemic administration of targeted lipid-based nanoparticles coated with antibodies targeting the CD38 cell marker can specifically target (bind) MCL cells and induce an inhibitory effect within the cells, by the inhibitory siRNA encapsulated within the particles. In some embodiments, the particles can provide protection in vivo and in-vitro) to the nucleic acid molecules encapsulated therein.
According to some embodiments, the disclosed targeted particles exhibit a safety profile, as repeated systemic administration did not affect body weight.
According to some embodiments, the targeted particles disclosed herein are particularly useful for MCL cells, other lymphomas and most hematopoietic cells, which are dispersed throughout the body and are not easily transfected by conventional lipid-based transfection reagents. The targeted particles disclosed are scalable, safe, efficient and allow high selectivity to subsets of leukocyte cells, in-vivo.
According to some embodiments, matching of the appropriate targeting moiety to the surface receptor expressed on the target cells can be performed to determine the targeting specificity of the particles. For example, it is possible to use different antibodies as targeting moieties for MCL cells and other B cell malignancies (including those that do not express the CD38 protein). In some embodiments, when matching the appropriate targeting moiety to the target cell, consideration may be taken as some receptors might cluster on the cell surface and induce an outside-in signaling event that could lead to proliferation, rather to inhibition of cellular growth.
According to some embodiments, the particles disclosed herein may be used as a diagnostic platform or a research tool for using in vivo gene knockdown to study leukocyte (such as, B cells and T-cells) biology.
In some embodiments, when treating a related condition, administration of the targeted particles carrying a nucleic acid may be performed in combination with one or more additional treatments. For example, when treating cancer, such combination therapy may be used to increase tumor susceptibility to chemotherapy and irradiation.
In some embodiments, for treating cancer, silencing nucleic acids (such as, siRNA, miRNA, shRNA, and the like) that target genes such as, but not limited to: Cyclins, MGMT, Cx43, HeR1/EGF-R46, VEGF44, BCL-2, STAT1, STAT3, MCL1, CKAP5, RRM1, SF3A1, CDK11B Toll-like receptors, and the like, may be used and may further provide synergistic responses.
In some embodiments, when treating a condition, repeated administration of the targeted particles may be performed, wherein the dosages administered and the composition of the nucleic acid encapsulated therein may be identical, similar or different. In some embodiments, the administration may be prolong (such as over the course of 1-120 hours).
The term comprising includes the term consisting of.
While a number of exemplary aspects and embodiments have been discussed above, those of skill in the art will recognize certain modifications, permutations, additions and sub-combinations thereof. It is therefore intended that the following appended claims and claims hereafter introduced be interpreted to include all such modifications, permutations, additions and sub-combinations as are within their true spirit and scope.
The following examples are presented in order to more fully illustrate some embodiments of the invention. They should, in no way be construed, however, as limiting the broad scope of the invention. One skilled in the art can readily devise many variations and modifications of the principles disclosed herein without departing from the scope of the invention.
Materials and Methods:
Materials
Lipids: All lipids used for LNPs production (Cholesterol, DSPC and DSPE PEG-Mal) were purchased from Avanti Polar lipids (USA). Dlin-MC3-DMA was synthesized according to Cohen et. al.
Monoclonal antibodies: FITC anti-mouse CD8 (clone 5H10-1), PerCP anti-mouse CD3 (clone 145-2C11), PE anti-mouse CD19 (clone 6D5) and PE anti-mouse CD4 (clone GK1.5) were purchased from BioLegend. Anti-mouse CD4 (clone YTS.177) and Rat IgG2a isotype (clone 2A3) were purchased from bioxcell. monoclonal antibodies THB-7 (mouse IgG1 anti-hCD38) and MOPC-21 (mouse IgG1 isotype ctrl) were purchased from BioXcell (USA).
Secondary antibody Alexa Flour® 647 AffinityPure F(ab′)2 fragment Donkey anti-rat IgG (H+L) (minimal cross-reaction to Mouse) was purchased from Jackson ImmunoResearch Laboratories.
siRNA molecules were designed and screened by Alnylam Pharmaceuticals (USA).
Chemically modified siRNAs sequences:
2′-OMe modified nucleotides are in lower case, and phosphorothioate linkages are represented by “s”.
Cells: Granta-519 and Jeko-1 cells were purchased from DSMZ (Germany) and TK-1, Mino and Rec-1 cells were purchased from the American Type Culture Collection (ATCC) and cultured as recommended.
Preparation of Lipid-Based Nanoparticles (LNPs) Entrapping siRNAs
LNPs were prepared by using microfluidic micro mixture (Precision NanoSystems, Vancouver, BC, Canada) as described by Cohen et. al. One volume of lipid mixtures (Dlin-MC3-DMA, DSPC, Chol, DMG-PEG and DSPE-PEG Mal at 50:10:38:1.5:0.5 mole ratio or Dlin-MC3-DMA, Chol, DSPC, DMG-PEG, DSPE-PEG-Mal at 50:38:10:1.95:0.05 molar ratio, 9.64 nM total lipid concentration) in ethanol and three volumes of siRNA (1:16 w/w siRNA to lipid) containing acetate buffer solutions were mixed by using dual syringe pump (Model 5200, kD Scientific, Holliston, MA) to drive the solutions through the micro mixer at a combined flow rate of 2 mL/minute (0.5 mL/min for ethanol and 1.5 mL/min for aqueous buffer). For labeled LNPs, 10% of Alexa-647 labeled siRNA were incorporated. For Cy5 labeled particles, 10% Cy5 labeled non-targeted siRNA was used. The resultant mixture was dialyzed against PBS (pH 7.4) for 16 h to remove ethanol.
Conjugation of Targeting Antibodies with LNPs (tLNPS)
CD4 IgG (clone YTS 177) or Isotype mAbs (clone X63) were reduced with 1 mM DTT for 30 min at room temperature. THB-7, isotype mAbs (MOPC-21) were reduced with DTT (1 mM and 5 mM, respectively) for 30 minutes shaking in 37° C. DTT was removed by using 7K cut off Zeba spin desalting columns (Thermo, USA) according to manufacturer protocol.
The thiolized mAbs were incubated with the Maleimide functionalized LNPs for 1-2 h in gentle shaking at room temperature and optionally overnight at 4° C.
Removal of unconjugated mAbs was performed by loading the LNPs on gel filtration chromatography columns containing sepharose CL-4B or CL-6B beads (Sigma-Aldrich, USA) with phosphate buffer saline (PBS) as a mobile phase. The beads-column was washed with 0.1M NaOH and readjusted with PBS prior to sample loading. The mAbs-LNPs-siRNA were reconcentrated via 10 k or 100 k Amicon Ultra-4 tubes (Millipore, USA) and optionally filtered through a 0.2 m membrane (Sartorius, Germany).
Size, ζ-Potential and Ultrastructure Analysis of αCD38-LNPs-siRNA
LNPs size distribution and (potential were determined by dynamic light scattering using a Malvern nano ZS ζ-sizer (Malvern instruments, UK). For size measurements, LNPs were diluted 1:20 in PBS. All utilized samples showed a polydispersity index (PDI) lower than 0.2. For ζ potential measurements, LNPs were diluted 1:200 in DDW. Size and shape of LNPs were analyzed by transmission electron microscopy (TEM). LNPs in PBS were placed on a formvar/carbon coated copper grid, air-dried and stained with 2% aqueous uranyl acetate. The analysis was performed with a Philips Tecnai F20 field emission TEM operated at 200 kV (USA). In some cases, as indicated, size and zeta potential measurements were performed in water.
Transmission Electron Microscopy (TEM) Analysis
A drop of aqueous solution containing LNPs (with or without mAbs) were placed on the carbon coated copper grid and dried. The morphology of LNPs was analyzed by Joel 1200 EX (Japan) transmission electron microscopy.
Confocal Microscopy Analysis:
One hour post administration of tLNPs, splenocytes were collected as mentioned above and stained with Hoechst (nucleus) and Calcein (Cytoplasm) labeling followed by anti-CD4-PE for membrane staining. Cells were washed and images were taken by Nikon C2 (Nikon Instruments inc., USA) confocal microscopy.
Dot Blot Analysis
Several concentration of Rat anti-CD4 (clone YTS.177) along with LNPs, tLNPs and IsoLNPs were blotted on nitrocellulose membrane. After blocking in 5% low-fat milk, the membrane was incubated with AffiniPure F(ab′)2 Fragment ANTI-RAT conjugated to Horseradish Peroxidase (Jackson immunoResearch) for 30 min in RT. ECL (Thermo Scientific Pierce) was used as a substrate solution.
Cell Sorting and qPCR
Five days after tLNPs (siCD45) were injected and splenocytes were isolated and stained with anti-CD4 PE and anti-CD45 AF647. As a control, mock treated splenocytes were stained with anti-CD4 PE. CD4+, CD45low population from tLNP treated mice was collected CD4+ cells were collected from mock mice as a control with FACSARIA (BD). mRNA was isolated using EZ-RNA (Biological industries, Israel) and cDNA was prepared using cDNA Synthesis kit (quanta biosciences) mouse PPIB was used as endogenous control. Primers sequence: mPPIB FW: 5′ CCA TCG TGT CAT CAA GGA CTT C 3′ (SEQ ID NO: 6); mPPIB Rev: 5′ GAT GCT CTT TCC TCC TGT GCC 3′ (SEQ ID NO: 7); mCD45 FW: 5′ TCT TAC ACC ATC CAC TCT GGG C 3′ (SEQ ID NO: 8); mCD45 Rev: 5′ GCT TCG TTG TGG TAG CTA TGG TT 3′ ((SEQ ID NO: 9).
Quantitative Real-Time PCR
Total RNA was isolated using EZ-RNA kit (Biological Industries, Israel) and cDNA was generated with qScript™ cDNA Synthesis Kit (Quanta, MD, USA) according to the manufacturers' instructions. qRT-PCR was performed with Fast SYBR® Green Master Mix and the ABI StepOnePlus™ instrument (Life Technologies). Expression of cyclins was normalized to the two “house-keeping” genes eIF3a & eIF3c using the multiple endogenous controls option. This option allows the software to treat all endogenous controls as a single population, and calculates the experiment-appropriate mean to establish a single value against which the target of interest is normalized. The primers used for amplification are listed below (5′ to 3′):
Electroporation
1 nmole of each the siRNA duplexes (siLuc or siCycD1) were electroporated into 10×106 Granta-519 or Jeko-1 cells using the Amaxa 4D-nuclefactor system (CM-119 program, SF solution).
In Vitro Cellular Uptake
Freshly isolated spelnocytes were incubated for 30 min at 4° C. with tLNPs (siCy5) followed by washing with PBS and incubation for 30 min at 37° C. to allow internalization. After, cells were stained with anti-CD4 PE and anti CD8-FITC. Cells were then analyzed by Nikon confocal microscope.
In Vivo tLNPs Biodistribution
Mice were intravenously injected with tLNPs (siCy5) at 1 mg/kg siRNA per body weight of mouse. After one hour mice were sacrificed to collect blood, spleen, lymph nodes and bone marrow cells.
Isolation of Lymphocytes: Blood were collected in heparin coated collection tubes and the leukocytes isolated by density centrifugation using ficoll paque plus (GE healthcare). Single cell suspensions of splenocytes were prepared by mincing of spleens and passing through a 70 μm cell strainer (BD bioscience). RBCs were lysed using ACK lysis buffer and the resulting cells were resuspended in PBS. Inguinal lymph nodes were isolated and minced to make single cell suspension. Cells were washed twice with PBS followed by passing through a 70 um cell strainer. Cells were stained with a secondary Alexa 647 conjugated anti-Rat Fc antibody at 4° C. for 30 min; tLNPs were detected on the surface of the cells by Alexa 647-anti-Rat Fc and/or by Cy5. Cells were then washed with PBS containing 1% FBS and incubated with labeled anti-CD4, CD8, and CD3 antibodies for 30 min at 4° C. Cells were washed and analyzed on a Becton Dickinson FACScalibur flow cytometer with CellQuest software (Becton Dickinson, Franklin Lakes, NJ). Data analysis was performed using FlowJo software (Tree Star, Inc., OR, USA). In addition, cells were imaged on a Nikon confocal microscope.
In Vivo Silencing
8-6 weeks old C57BL6/J mice were obtained from the Animal Breeding Center, Tel Aviv University (Tel Aviv, Israel). All animal protocols were approved by the Tel Aviv Institutional Animal Care and Use Committee. Mice were maintained and treated according National Institutes of Health guidelines. tLNPs or isotype LNPs containing siRNA against CD45 or luciferase were injected intravenously (1 mg/kg siRNA). Mice were euthanized after 5 days and organs were collected for further analysis.
In Vivo Immune Activation
LNPs were injected intravenously into C57BL mice. Lipopolysaccharide (LPS, Sigma) at a concentration of 1 mg/mL (100 μL) was used as a positive control. Blood was collected 2 hr after injection. Serum was separated and stored at −80° C. prior to cytokine analysis. Serum samples were analyzed for cytokine levels according to manufacturer protocol using the Milliplex® MAP kit (Millipore). The quantification was done based on standard curves for each cytokine.
In Vitro Binding Experiments
THB-7 (antiCD38) mAb was labeled with Alexa Fluor(R) 647 protein labeling kit (Invitrogen, USA). Binding of the labeled mAb to MCL cell lines was assessed by flow cytometry (BD FACScalibur, USA, with CellQuest software for data collection and FlowJo software for data analysis). To determine the specific binding of αCD38-LNPs-siRNA, MCL cell lines expressing GFP and murine T-lymphoma TK1 cell line (0.5×106 each) were incubated together on ice with either 1% fetal calf serum PBS or with the buffer including 1 μg of free αCD38 mAb. After 15 minutes, αCD38-LNPs-siRNA with labeled siRNA were added (0.5 g total siRNA) for 30 additional minutes. Cells were collected for flow cytometry analysis after 3 rounds of PBS wash. Cell populations were separately gated based on GFP fluorescence.
In Vitro Internalization Experiments
0.5×106 Granta cells were incubated in 50 μL of 1% serum PBS on 4 degrees with alexa-647 αCD38 or isotype control mAbs for 10 minutes and then incubated for 2 h at 37° C. (5% CO2). Then, cells were washed twice, stained with PE-hCD20 mAbs (Biolegend, 302306) for 30 minutes on ice, washed and subjected to confocal microscopy analysis. For assessing the internalization of αCD38-LNPs-siRNA, 0.5×106 Granta cells were incubated in 50 μL of 1% serum PBS on ice with αCD38-, isotype- or uncoated siRNA-LNPs including labeled siRNA (500 ng of total siRNA). After 10 minutes, cells passed through 3 rounds of PBS wash and were re-incubated in fresh medium for 4 h at 37° C. (5% CO2). Then, cells were washed, stained with PE-hCD20 mAbs for 30 minutes on ice, washed and subjected to confocal microscopy analysis. All pictures were obtained on live cells using the Nikon Eclipse C2 configured with NI-E microscope and processed with NIS-elements software using X40 objective magnification (Nikon, Japan).
In Vitro Gene Silencing
0.3×106 Granta-519 or Jeko-1 cells were placed in tissue culture 24-wells plates with 0.5 mL of full medium. αCD38-LNPs-siCycD1 or αCD38-LNPs-siLuc were added to the wells (2 μg of siRNA for each condition). After 18 h incubation in standard culture conditions, cells were washed 3 times and re-incubated in fresh medium in culture conditions. 48 h following initial exposure to treatments, cells were collected for cycD1 protein quantification, mRNA quantification or cell cycle measuring. cycD1 intracellular staining was performed according to the BD Pharmingen™ Transcription Factor Buffer set instructions using rabbit anti human cycD1 monoclonal antibody (Cell marque, 241R-16) or isotype control (Jackson ImmunoResearch, 011-000-003) at 0.68 μg/mL. Cells were washed and incubated with 2 μg/mL of Alexa647 Donkey anti-rabbit antibody (Jackson ImmunoResearch, 711-605-152) for 30 minutes at 4° C., washed twice and analysed by flow cytometry. The geometric mean of detected Alexa Fluor®-647 fluorescence intensity for at least 5000 cells was used as the compared value for each sample. cycD1 relative expression for each treatment group was derived from the quotient of the value of cycD1 staining divided by the value of isotype ctrl staining.
Cell Cycle Studies
The transfected cells were washed with ice-cold PBS, and fixed with 70% ethanol for 1 h. Then, the cells were washed twice with cold PBS and incubated for 10 min at 37° C. in 250 μL PBS with 10 μg/mL propidium iodide (PI), 2.5 μg/mL DNase-free RNase A (Sigma, USA) and 0.01% Triton-X. PI fluorescence was assessed by flow cytometry. Analyzes by FlowJo™ were performed on t least 9000 cells per samples after gating out debris and cell duplets based on the FL2-Area/FL2-Width channels. Cell cycle distributions were obtained via the application of the Dean-Jett-Fox model on gated cells with RMS scores ranging between 1.5 and 2.5.
Ex Vivo Binding with Human MCL Primary Samples
Peripheral blood samples were obtained from MCL patients treated at the Rabin medical center, (Petah Tikva, Israel) and the Chaim Sheba Medical Center at Tel Hashomer, (Ramat Gan, Israel) in accordance with institutional review board-approved informed consent. Mononuclear cells were extracted from full blood samples using Ficoll-Paque™ PLUS (GE Healthcare, UK). 1×106 of cells from the primary sample were incubated with targeted LNPs and free competing αCD38 mAb as described in the in vitro binding experiments. After 3 rounds of wash, cells were stained with CD19 (Biolegend, 302219) and CD45 (Biolegend, 304008) mAbs for 30 minutes on ice. Membranal staining was used during analysis to separate B-lymphocytes (CD19+/CD45+) from non-B leukocytes populations (CD19-/CD45+) while assessing for siRNA fluorescence.
Human MCL Xenograft Mouse Model
To enable easier identification of the MCL cells in vivo, Granta-519 cells were stably infected with pTurbo-GFP retroviral particles (kindly supplied by Prof. Eran Bacharach). The infected cells were sorted according to their GFP expression, and the highest GFP population (Granta-GFP) was collected and grew.
For modeling MCL in vivo, Female C.B-17/IcrHsd-Prkdcscid mice were purchased from Harlan laboratories (Jerusalem, Israel). The mice were housed and maintained in laminar flow cabinets under specific pathogen-free (SPF) conditions in the animal quarters of Tel Aviv University and in accordance with current regulations and standards of the Israel Ministry of Health. All animal protocols were approved by Tel Aviv University Institutional Animal Care and Use Committee.
2.5×106 Granta-519 or Granta-GFP cells were intravenously injected into 8 weeks old mice. Mice were monitored daily and killed when disease symptoms appeared (15% reduction in body weight or hind leg paralysis). Different tissues and organs (liver, kidney, lungs, spleen, blood, bone marrow, and if existed, solid tumor) were collected with respect to the different experiments, and processed into single cell suspensions. To identify the MCL cells, cell suspensions were analyzed by flow cytometry, using PE mouse anti human CD45 antibody, PE or alexa 647 mouse anti human CD20 (Biolegend, 302318) antibodies and/or GFP expression. Femour bones were fixed, sliced, decalcified and stained with H&E as described before (38).
In Vivo Binding of αCD38 mAb
MCL xenograft mice were intravenously injected with 30 μg of Alexa-647 labeled αCD38 or isotype control mAbs at day of hind-leg paralysis appearance. 2 h later, mice were scarified and liver, kidneys, lungs, spleen and bone marrow were harvested and processed into single cell suspensions. αCD38 fluorescence on cells was assessed by flow cytometry.
In Vivo Binding of Targeted LNPs
At day 24 post tumor injection, either saline, isotype- or αCD38-LNPs-siCycD1 including labeled siRNA (1.25 mg siRNA/kg body) were administered i.v. via the tail vein. After 2 h, mice were sacrificed and cells from the bone marrow extracted. Single cell suspensions were prepared by passing the cells through 70 m cell strainers (BD) and washing with PBS. Cells were stained with Alexa Fluor®-488-hCD20 (Biolegend, 302316) and PE-mCD45 (Biolegend 103106) mAbs for 30 minutes and washed prior to analysis. Human MCL cells (GFP+/hCD20+/mCD45−) and murine cells (GFP−/hCD20−/mCD45+) were gated separately and assessed for siRNA fluorescence. The cells from the mock-treated mouse were used as a baseline for negative fluorescence, while cells in other groups were considered positive to siRNA fluorescence if exhibiting higher values than the 99th percentile's value of mock.
Survival Experiment
The survival experiment was performed in Charles Rivers Laboratories, Tranent, Scotland, in accordance with local ethical requirements. 30 MCL xenograft mice were divided into 3 treatment groups: untreated (mock), αCD38-LNPs-siLuc and αCD38-LNPs-siCycD1. The different treatments (1 mg siRNA/kg body) were injected via retro-orbital route 9 times (days 5, 8, 12, 15, 19, 22, 26, 29, 33). Mice displaying loss of 15% bodyweight or limb paralysis were euthanized.
Statistical Analysis
In experiments with multiple groups, one-way ANOVA with Bonferroni correction was sued. For the comparison of two experimental groups, two-tailed Student's t test was used. Differences between or among groups are labeled as n.s. for not significant, * for p<0.05, ** for p<0.005 and *** for p<0.0005. A value of P<0.05 was considered statistically significant. Analyzes were performed with Prism 6 (Graphpad Software).
To prepare the effective siRNA delivery system for T cells, which include siRNA-encapsulated LNPs a microfluidic mixer system (Nanoassemblr) was used. The particles were prepared as detailed above. The mixing of acidified siRNAs (pH 4) with a mixture of lipids (cholesterol, DSPC, PEG-DMG, Dlin-MC3-DMA and DSPE-PEG-maleimide; illustrated in
Antibody presence on the surface of LNPs was confirmed using a dot plot assay, as shown in
Lipid-nanoparticles (LNPs) encapsulating siRNAs using a microfluidic mixing system as described were constructed (
Data are represented as mean±s.d. out of 12 (size & PDI) or 2 (ζ-potential) measurements for independently produced batches. All individual measurements included 3 technical replicates.
For the siRNA to be delivered to the cell, the targeting moiety should induce internalization of the nucleic acid encapsulated within the particles. To test whether tLNPs can mediate specific targeting of siRNA to CD4+ cells and induce internalization, tLNPs or LNPs coated with an isotype control mAb (isoLNPs) encapsulating Cy5 labeled-siRNA (siCy5) were used to treat a heterogeneous population of primary C57BL/6 splenocytes ex vivo. To measure binding to the target cells, tLNPs (siCy5) or isoLNPs (siCy5) were incubated with heterogeneous population of splenocytes, and analyzed by flow cytometry. As shown in
To test the tLNPs uptake, an additional stage of incubation at 37° C. for 30 min was added following tLNPs binding. Confocal microscopy was used to demonstrate the uptake of tLNPs into the target cells. As shown in
To examine the capability of tLNP delivering siRNAs to silence gene expression in CD4+ T cells in vivo, tLNPs containing siRNAs against CD45 (tLNPs (siCD45)) were prepared. CD45, a cell surface tyrosine phosphatase, was chosen since it is a pan-leukocyte marker and thus can be used for testing specific silencing in different leukocyte subsets. First, it was tested whether tLNPs can target circulating CD4+ T cells. Mice were intravenously injected with tLNPs (siCy5) or isoLNPs (siCy5) as control. One hour post administration, blood was harvested, stained for markers of different leukocytes subsets and analyzed by flow cytometry. The results shown in
After confirming in vivo binding, the ability of tLNPs (siCD45) to knockdown CD45 expression in C57BL/6 mice was tested. To this end, several LNPs were used as controls, including tLNPs that were constructed using siRNA against luciferase (tLNPs(siluc)) and isoLNPs (siCD45) or LNPs (siCD45) (unmodified, non-conjugated LNPs). Five days post administration, blood was harvested and cells were stained for CD45. As shown in
Next, the tLNPs were tested for immune toxicity. To this aim, a panel of cytokines, including, TNF-α, IL-17 and IL-10 were tested, in mice treated with either the tLNPs (siCD45) or LPS, a potent TLR activator, as a positive control. As shown in
One of the challenges associated with leukocyte targeted therapies is that in order to manipulate all leukocytes of a specific subset, such as CD4+ T cells, the delivery agent needs to reach diverse organs within the body, since leukocyte are distributed across multiple tissues, including spleen, lymph nodes and bone marrow. To determine the breadth of siRNA delivery across lymphoid tissues, a systematic examination of the binding of tLNPs to CD4+ T cells in different hematopoietic organs was performed. Mice were injected intravenously with tLNPs (siCy5) or isoLNPs (siCy5). One hour post injection, cells from the spleen, inguinal lymph nodes and bone marrow were isolated and stained with a set of antibodies to detect different leukocytes subsets (anti-CD3, anti-CD4 and anti-CD8). Remarkably, all CD4+ T cells from each of the tissues tested showed specific binding of the tLNPs, while no binding to any of the organs has observed in mice treated with isoLNPs (
As shown in
To examine whether tLNPs amount is a limiting factor, the binding and silencing efficacy of tLNPs at higher tLNPs doses (2 mg/kg siRNA) was tested. As shown in
After establishing tLNPs as a platform strategy to specifically silence genes of interest using siRNAs in circulating and resting CD4+T lymphocytes (using the pan leukocyte surface marker CD45 as a gene model), the mechanism that underlie the differences between the two CD4+ T cell populations that differ in their response to the tLNPs was investigated. One demonstrate CD45 silencing and the other do not alter its CD45 expression levels. Intriguingly, two distinct CD4+ T cell populations were noticed in all tissues tested in binding experiments after 1 h (
Next, it was aimed to confirm that CD4low cells not only internalize the tLNPs, but also that this internalization leads to silencing. This will determine that the bottleneck for gene silencing in CD4 cells using tLNPs system is the internalization step. For this purpose, an experiment in which CD4low and CD4high populations are separated by FACS Sorter (
Revealing that CD4low is the silenced population also contributes to decipher how lymph node CD4+ T cells exhibit high knockdown efficacy while showing the lowest tLNPs uptake. Following uptake of the particles at the single cell level is limited when using siCy5 due to degradation of the florescence dye along with florescence decay due to low endosomal pH. Indeed Cy5 labeling is dramatically decrease among all tissues 4 h post administration (
To test the ability of αCD38-LNPs-siCycD1 to target dispersed MCL cells, an animal model of disseminated MCL in which MCL cells home to the bone marrow (BM), as in the advanced stages of the human disease was established. Granta-519 cells (2.5×106) stably expressing GFP (Granta-GFP) were injected intravenously (i.v.) into 6-8 weeks old female C-mB-17 SCID mice. These mice developed hind-leg paralysis after 24 to 30 days, at which time liver, lungs, spleen, kidney, blood and BM cells were harvested to assess the distribution of MCL cells by flow cytometry. Granta-GFP cells consistently homed to the bone marrow (
Targeting siRNAs selectively to tumors requires the identification of a cell surface receptor that is over-expressed on tumor cells compared to most other tissues, whose binding leads to endocytosis and release of endocytosed siRNAs into the target cell cytoplasm. Consistent with previous reports (Chang et. al.), it was found that CD38 is highly and broadly expressed on four tested MCL lines (
To test whether αCD38-LNPs-siRNA specifically bind to MCL cells, human MCL were co-cultured with CD38− (negative) mouse T lymphoma TK-1 cell lines and the mixtures were with αCD38-LNPs-siRNA (as prepared in Example 2) containing fluorescently labeled siRNAs (
Next it was examined whether αCD38-LNPs loaded with cycD1 siRNA (siCycD1), or as control luciferase siRNA (siLuc), could mediate gene silencing in two MCL cell lines, Granta-519 and Jeko-1 (
CycD1 overexpression is a prominent genetic hallmark and tumorigenic factor in MCL. The relevance of selective cycD1 silencing in MCL has been questioned before due to compensatory elevation of cyclin D2 expression. As shown, it was detected that the down-regulation of cycD1 expression induces a compensatory upregulation of cyclin D2 expression (
The ability of αCD38-LNP-siRNA to deliver siRNAs into Granta-519 xenografts in vivo, was tested. When hind leg paralysis appeared, MCL-bearing mice were mock treated or treated i.v. with LNPs, loaded with fluorescently labeled siRNAs, those were coated with αCD38 or an isotype control antibody. BM was extracted 2 hours later and analyzed by flow cytometry for siRNA uptake into mouse CD45+ cells and the human tumor, stained with anti-human CD20 antibody (
The therapeutic effect of CD38-LNPs-siCycD1 on the survival of MCL-bearing mice was tested. Mice (n=10/group) were treated biweekly with 9 i.v. injections of 1 mg/kg siRNA, starting 5 days after tumor inoculation. Control mice were mock treated or treated with CD38-LNPs-siLuc. No loss in body weight was observed during the first 21 days of the experiment, indicating that the treatments did not induce major adverse effects (
| Number | Name | Date | Kind |
|---|---|---|---|
| 10583084 | Peer | Mar 2020 | B2 |
| 20110038941 | Lee | Feb 2011 | A1 |
| 20130245107 | de Fougerolles | Sep 2013 | A1 |
| 20140134260 | Heyes | May 2014 | A1 |
| Number | Date | Country |
|---|---|---|
| 2009120247 | Oct 2009 | WO |
| 2011154453 | Dec 2011 | WO |
| 2013098813 | Jul 2013 | WO |
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| Number | Date | Country | |
|---|---|---|---|
| 20210108228 A1 | Apr 2021 | US |
| Number | Date | Country | |
|---|---|---|---|
| 62268526 | Dec 2015 | US | |
| 62166146 | May 2015 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 15571535 | US | |
| Child | 17128736 | US |
