Methods and compositions for inhibition of membrane fusion-associated events, including HIV transmission

1. INTRODUCTION

The present invention relates, first, to DP178 (SEQ ID NO:1), a peptide corresponding to amino acids 638 to 673 of the HIV-1_LAItransmembrane protein (TM) gp41, and portions or analogs of DP178 (SEQ ID NO:1), which exhibit anti-membrane fusion capability, antiviral activity, such as the ability to inhibit HIV transmission to uninfected CD-4+ cells, or an ability to modulate intracellular processes involving coiled-coil peptide structures. Further, the invention relates to the use of DP178 (SEQ ID NO:1) and DP178 portions and/or analogs as antifusogenic or antiviral compounds or as inhibitors of intracellular events involving coiled-coil peptide structures. The present invention also relates to peptides analogous to DP107 (SEQ ID NO:25), a peptide corresponding to amino acids 558 to 595 of the HIV-1_LAItransmembrane protein -(TM) gp41, having amino acid sequences present in other viruses, such as enveloped viruses, and/or other organisms, and further relates to the uses of such peptides. These peptides exhibit anti-membrane fusion capability, antiviral activity, or the ability to modulate intracellular processes involving coiled-coil peptide structures. The present invention additionally relates to methods for identifying compounds that disrupt the interaction between DP178 and DP107, and/or between DP107-like and DP178-like peptides. Further, the invention relates to the use of the peptides of the invention as diagnostic agents. For example, a DP178 peptide may be used as an HIV subtype-specific diagnostic. The invention is demonstrated, first, by way of an Example wherein DP178 (SEQ ID:1), and a peptide whose sequence is homologous to DP178 are each shown to be potent, non-cytotoxic inhibitors of HIV-1 transfer to uninfected CD-4⁺ cells. The invention is further demonstrated by Examples wherein peptides having structural and/or amino acid motif similarity to DP107 and DP178 are identified in a variety of viral and nonviral organisms, and in examples wherein a number of such identified peptides derived from several different viral systems are demonstrated to exhibit antiviral activity.

2. BACKGROUND OF THE INVENTION
2.1 Membrane Fusion Events

Membrane fusion is a ubiquitous cell biological process (for a review, see White, J. M., 1992, Science 258:917-924). Fusion events which mediate cellular housekeeping functions, such as endocytosis, constitutive secretion, and recycling of membrane components, occur continuously in all eukaryotic cells.

Additional fusion events occur in specialized cells. Intracellularly, for example, fusion events are involved in such processes as occur in regulated exocytosis of hormones, enzymes and neurotransmitters. Intercellularly, such fusion events feature prominently in, for example, sperm-egg fusion and myoblast fusion.

Fusion events are also associated with disease states. For example, fusion events are involved in the formation of giant cells during inflammatory reactions, the entry of all enveloped viruses into cells, and, in the case of human immunodeficiency virus (HIV), for example, are responsible for the virally induced cell-cell fusion which leads to cell death.

2.2. The Human Immunodeficiency Virus

The human immunodeficiency virus (HIV) has been implicated as the primary cause of the slowly degenerative immune system disease termed acquired immune deficiency syndrome (AIDS) (Barre-Sinoussi, F. et al., 1983, Science 220:868-870; Gallo, R. et al., 1984, Science 224:500-503). There are at least two distinct types of HIV: HIV-1 (Barre-Sinoussi, F. et al., 1983, Science 220:868-870; Gallo R. et al., 1984, Science 224:500-503) and HIV-2 (Clavel, F. et al., 1986, Science 233:343-346; Guyader, M. et al., 1987, Nature 326:662-669). Further, a large amount of genetic heterogeneity exists within populations of each of these types. Infection of human CD-4⁺ T-lymphocytes with an HIV virus leads to depletion of the cell type and eventually to opportunistic infections, neurological dysfunctions, neoplastic growth, and ultimately death.

HIV is a member of the lentivirus family of retroviruses (Teich, N. et al., 1984, RNA Tumor Viruses, Weiss, R. et al., eds., CSH-Press, pp. 949-956). Retroviruses are small enveloped viruses that contain a diploid, single-stranded RNA genome, and replicate via a DNA intermediate produced by a virally-encoded reverse transcriptase, an RNA-dependent DNA polymerase (Varmus, H., 1988, Science 240:1427-1439). Other retroviruses include, for example, oncogenic viruses such as human T-cell leukemia viruses (HTLV-I,-II,-III), and feline leukemia virus.

The HIV viral particle consists of a viral core, composed of capsid proteins, that contains the viral RNA genome and those enzymes required for early replicative events. Myristylated Gag protein forms an outer viral shell around the viral core, which is, in turn, surrounded by a lipid membrane enveloped derived from the infected cell membrane. The HIV enveloped surface glycoproteins are synthesized as a single 160 Kd precursor protein which is cleaved by a cellular protease during viral budding into two glycoproteins, gp41 and gp120. gp41 is a transmembrane protein and gp120 is an extracellular protein which remains non-covalently associated with gp4l, possibly in a trimeric or multimeric form (Hammarskjold, M. and Rekosh, D., 1989, Biochem. Biophys. Acta 989:269-280).

HIV is targeted to CD-4⁺ cells because the CD-4 cell surface protein acts as the cellular receptor for the HIV-1 virus (Dalgleish, A. et al., 1984, Nature 25 312:763-767; Klatzmann et al., 1984, Nature 312:767-768; Maddon et al., 1986, Cell 47:333-348). Viral entry into cells is dependent upon gp120 binding the cellular CD-4⁺ receptor molecules (McDougal, J. S. et al., 1986, Science 231:382-385; Maddon, P. J. et al., 1986, Cell 47:333-348) and thus explains HIV's tropism for CD-4⁺ cells, while gp41 anchors the enveloped glycoprotein complex in the viral membrane.

2.3. HIV Treatment

HIV infection is pandemic and HIV associated diseases represent a major world health problem. Although considerable effort is being put into the successful design of effective therapeutics, currently no curative anti-retroviral drugs against AIDS exist. In attempts to develop such drugs, several stages of the HIV life cycle have been considered as targets for therapeutic intervention (Mitsuya, H. et al., 1991, FASEB J. 5:2369-2381). For example, virally encoded reverse transcriptase has been one focus of drug development. A number of reverse-transcriptase-targeted drugs, including 2′,3′-dideoxynucleoside analogs such as AZT, ddI, ddC, and d4T have been developed which have been shown to been active against HIV (Mitsuya, H. et al., 1991, Science 249:1533-1544). While beneficial, these nucleoside analogs are not curative, probably due to the rapid appearance of drug resistant HIV mutants (Lander, B. et al., 1989, Science 243:1731-1734). In addition, the drugs often exhibit toxic side effects such as bone marrow suppression, vomiting, and liver function abnormalities.

Attempts are also being made to develop drugs which can inhibit viral entry into the cell, the earliest stage of HIV infection. Here, the focus has thus far been on CD4, the cell surface receptor for HIV. Recombinant soluble CD4, for example, has been shown to inhibit infection of CD-4⁺ T-cells by some HIV-1 strains (Smith, D. H. et al., 1987, Science 238:1704-1707). Certain primary HIV-1 isolates, however, are relatively less sensitive to inhibition by recombinant CD-4 (Daar, E. et al., 1990, Proc. Natl. Acad. Sci. USA 87:6574-6579). In addition, recombinant soluble CD-4 clinical trials have produced inconclusive results (Schooley, R. et al., 1990, Ann. Int. Med. 112:247-253; Kahn, J. O. et al., 1990, Ann. Int. Med. 112:254-261; Yarchoan, R. et al., 1989, Proc. Vth Int. Conf. on AIDS, p. 564, MCP 137).

The late stages of HIV replication, which involve crucial virus-specific secondary processing of certain viral proteins, have also been suggested as possible anti-HIV drug targets. Late stage processing is dependent on the activity of a viral protease, and drugs are being developed which inhibit this protease (Erickson, J., 1990, Science 249:527-533). The clinical outcome of these candidate drugs is still in question.

Attention is also being given to the development of vaccines for the treatment of HIV infection. The HIV-1 enveloped proteins (gp160, gp120, gp41) have been shown to be the major antigens for anti-HIV antibodies present in AIDS patients (Barin, et al., 1985, Science 228:1094-1096). Thus far, therefore, these proteins seem to be the most promising candidates to act as antigens for anti-HIV vaccine development. To this end, several groups have begun to use various portions of gp160, gp120, and/or gp41 as immunogenic targets for the host immune system. See for example, Ivanoff, L. et al., U.S. Pat. No. 5,141,867; Saith, G. et al., WO 92/22,654; Shafferman, A., WO 91/09,872; Formoso, C. et al., WO 90/07,119. Clinical results concerning these candidate vaccines, however, still remain far in the future.

Thus, although a great deal of effort is being directed to the design and testing of anti-retroviral drugs, a truly effective, non-toxic treatment is still needed.

3. SUMMARY OF THE INVENTION

The present invention relates, first, to DP178 (SEQ ID:1), a 36-amino acid synthetic peptide corresponding to amino acids 638 to 673 of the transmembrane protein (TM) gp41 from the HIV-1 isolate LAI (HIV-1_LAI), which exhibits potent anti-HIV-1 activity. As evidenced by the Example presented below, Section 6, the DP178 (SEQ ID:1) antiviral activity is so high that, on a weight basis, no other known anti-HIV agent is effective at concentrations as low as those at which DP178 (SEQ ID:1) exhibits its inhibitory effects.

The invention further relates to those portions and analogs of DP178 which also show such antiviral activity, and/or show anti-membrane fusion capability, or an ability to modulate intracellular processes involving coiled-coil peptide structures. The term “DP178 analog” refers to a peptide which contains an amino acid sequence corresponding to the DP178 peptide sequence present within the gp41 protein of HIV-L1_LAI, but found in viruses and/or organisms other than HIV-1_LAI. Such DP178 analog peptides may, therefore, correspond to DP178-like amino acid sequences present in other viruses, such as, for example, enveloped viruses, such as retroviruses other than HIV-1_LAI, as well as non-enveloped viruses. Further, such analogous DP178 peptides may also correspond to DP178-like amino acid sequences present in nonviral organisms.

The invention further relates to peptides DP107 (SEQ ID NO:25) analogs. DP107 is a peptide corresponding to amino acids 558-595 of the HIV-1_LAItransmembrane protein (TM) gp41. The term “DP107 analog” as used herein refers to a peptide which contains an amino acid sequence corresponding to the DP107 peptide sequence present within the gp41 protein of HIV-1_LAI, but found in viruses and organisms other than HIV-1_LAI. Such DP107 analog peptides may, therefore, correspond to DP107-like amino acid sequences present in other viruses, such as, for example, enveloped viruses, such as retroviruses other than HIV-1_LAI, as well as non-enveloped viruses. Further, such DP107 analog peptides may also correspond to DP107-like amino acid sequences present in nonviral organisms.

Further, the peptides of the invention include DP107 analog and DP178 analog peptides having amino acid sequences recognized or identified by the 107x178x4, ALLMOTI5 and/or PLZIP search motifs described herein.

The peptides of the invention may, for example, exhibit antifusogenic activity, antiviral activity, and/or may have the ability to modulate intracellular processes which involve coiled-coil peptide structures. With respect to the antiviral activity of the peptides of the invention, such an antiviral activity includes, but is not limited to the inhibition of HIV transmission to uninfected CD-4⁺ cells. Additionally, the antifusogenic capability, antiviral activity or intracellular modulatory activity of the peptides of the invention merely requires the presence of the peptides of the invention, and, specifically, does not require the stimulation of a host immune response directed against such peptides.

The peptides of the invention may be used, for example, as inhibitors of membrane fusion-asociated events, such as, for example, the inhibition of human and non-human retroviral, especially HIV, transmission to uninfected cells. It is further contemplated that the peptides of the invention may be used as modulators of intracellular events involving coiled-coil peptide structures.

The peptides of the invention may, alternatively, be used to identify compounds which may themselves exhibit antifusogenic, antiviral, or intracellular modulatory activity. Additional uses include, for example, the use of the peptides of the invention as organism or viral type and/or subtype-specific diagnostic tools.

The terms “antifusogenic” and “anti-membrane fusion”, as used herein, refer to an agent's ability to inhibit or reduce the level of membrane fusion events between two or more moieties relative to the level of membrane fusion which occurs between said moieties in the absence of the peptide. The moieties may be, for example, cell membranes or viral structures, such as viral envelopes or pili. The term “antiviral”, as used herein, refers to the compound's ability to inhibit viral infection of cells, via, for example, cell-cell fusion or free virus infection. Such infection may involve membrane fusion, as occurs in the case of enveloped viruses, or some other fusion event involving a viral structure and a cellular structure (e.g., such as the fusion of a viral pilus and bacterial membrane during bacterial conjugation).

It is also contemplated that the peptides of the invention may exhibit the ability to modulate intracellular events involving coiled-coil peptide structures. “Modulate”, as used herein, refers to a stimulatory or inhibitory effect on the intracellular process of interest relative to the level or activity of such a process in the absence of a peptide of the invention.

Embodiments of the invention are demonstrated below wherein an extremely low concentration of DP178 (SEQ ID:1), and very low concentrations of a DP178 homolog (SEQ ID:3) are shown to be potent inhibitors of HIV-1 mediated CD-4⁺ cell-cell fusion (i.e., syncytial formation) and infection of CD-4⁺ cells by cell-free virus. Further, it is shown that DP178 (SEQ ID:1) is not toxic to cells, even at concentrations 3 logs higher than the inhibitory DP-178 (SEQ ID:1) concentration.

The present invention is based, in part, on the surprising discovery that the DP107 and DP178 domains of the HIV gp41 protein non-covalently complex with each other, and that their interaction is required for the normal infectivity of the virus. This discovery is described in the Example presented, below, in Section 8. The invention, therefore, further relates to methods for identifying antifusogenic, including antiviral, compounds that disrupt the interaction between DP107 and DP178, and/or between DP107-like and DP178-like peptides.

Additional embodiments of the invention (specifically, the Examples presents in Sections 9-16 and 19-25, below) are demonstrated, below, wherein peptides, from a variety of viral and nonviral sources, having structural and/or amino acid motif similarity to DP107 and DP178 are identified, and search motifs for their identification are described.

Further, Examples (in Sections 17, 18, 25-29) are presented wherein a number of the peptides of the invention are demonstrated exhibit substantial antiviral activity or activity predictive of antiviral activity.

3.1. Definitions

Peptides are defined herein as organic compounds comprising two or more amino acids covalently joined by peptide bonds. Peptides may be referred to with respect to the number of constituent amino acids, i.e., a dipeptide contains two amino acid residues, a tripeptide contains three, etc. Peptides containing ten or fewer amino acids may be referred to as oligopeptides, while those with more than ten amino acid residues are polypeptides. Such peptides may also include any of the modifications and additional amino and carboxy groups as are described herein.

Peptide sequences defined herein are represented by one-letter symbols for amino acid residues as follows:

A (alanine)
R (arginine)
N (asparagine)
D (aspartic acid)
C (cysteine)
Q (glutamine)
E (glutamic acid)
G (glycine)
H (histidine)
I (isoleucine)
L (leucine)
K (lysine)
M (methionine)
F (phenylalanine)
P (proline)
S (serine)
T (threonine)
W (tryptophan)
Y (tyrosine)
V (valine)

4. BRIEF DESCRIPTION OF THE FIGURES

FIG. 1. Amino acid sequence of DP178 (SEQ ID:1) derived from HIV_LAI; DP178 homologs derived from HIV-1_SF2(DP-185; SEQ ID:3), HIV-1_RF(SEQ ID:4), and HIV-1_MN(SEQ ID:5); DP178 homologs derived from amino acid sequences of two prototypic HIV-2 isolates, namely, HIV-2_rod(SEQ ID:6) and HIV-2_NIHZ(SEQ ID:7); control peptides: DP-180 (SEQ ID:2), a peptide incorporating the amino acid residues of DP178 in a scrambled sequence; DP-118 (SEQ ID:10) unrelated to DP178, which inhibits HIV-1 cell free virus infection; DP-125 (SEQ ID:8), unrelated to DP178, also inhibits HIV-1 cell free virus infection; DP-116 (SEQ ID:9), unrelated to DP178, is negative for inhibition of HIV-1 infection when tested using a cell-free virus infection assay. Throughout the figures, the one letter amino acid code is used.

FIG. 2. Inhibition of HIV-1 cell-free virus infection by synthetic peptides. IC₅₀refers to the concentration of peptide that inhibits RT production 20 from infected cells by 50% compared to the untreated control. Control: the level of RT produced by untreated cell cultures infected with the same level of virus as treated cultures.

FIG. 3. Inhibition of HIV-1 and HIV-2 cell-free virus infection by the synthetic peptide DP178 (SEQ ID:1). IC₅₀: concentration of peptide that inhibits RT production by 50% compared to the untreated control. Control: Level of RT produced by untreated cell cultures infected with the same level of virus as treated cultures.

FIGS. 4A-4B. Fusion Inhibition Assays. FIG. 4A: DP178 (SEQ ID:1) inhibition of HIV-1 prototypic isolate-mediated syncytial formation; data represents the number of virus-induced syncytial per cell. FIG. 4B: DP-180 (SEQ ID:2) represents a scrambled control peptide; DP-185 (SEQ ID:3) represents a DP178 homolog derived from HIV-1_SF2isolate; Control, refers to the number of syncytial produced in the absence of peptide.

FIG. 5. Fusion inhibition assay: HIV-1 vs. HIV-2. Data represents the number of virus-induced syncytial per well. ND: not done.

FIG. 6. Cytotoxicity study of DP178 (SEQ ID:1) and DP-116 (SEQ ID:9) on CEM cells. Cell proliferation data is shown.

FIG. 7. Schematic representation of HIV-gp41 and maltose binding protein (MBP)-gp41 fusion proteins. DP107 and DP178 are synthetic peptides based on the two putative helices of gp41. The letter P in the DP107 boxes denotes an Ile to Pro mutation at amino acid number 578. Amino acid residues are numbered according to Meyers et al., “Human Retroviruses and AIDS”, 1991, Theoret. Biol. and Biophys. Group, Los Alamos Natl. Lab., Los Alamos, N. Mex. The proteins are more fully described, below, in Section 8.1.1.

FIG. 8. A point mutation alters the conformation and anti-HIV activity of M41.

FIG. 9. Abrogation of DP178 anti-HIV activity. Cell fusion assays were carried out in the presence of 10 nM DP178 and various concentrations of M41Δ1178 or M41PΔ178.

FIG. 10. Binding of DP178 to leucine zipper of gp41 analyzed by FAb-D ELISA.

FIG. 11A-B. Models for a structural transition in the HIV-1 TM protein. Two models are proposed which indicate a structural transition from a native oligomer to a fusogenic state following a trigger event (possibly gp120 binding to CD4). Common features of both models include (1) the native state is held together by noncovalent protein-protein interactions to form the heterodimer of gp120/41 and other interactions, principally though gp41 interactive sites, to form homo-oligomers on the virus surface of the gp120/41 complexes; (2) shielding of the hydrophobic fusogenic peptide at the N-terminus (F) in the native state; and (3) the leucine zipper domain (DP107) exists as a homo-oligomer coiled coil only in the fusogenic state. The major differences in the two models include the structural state (native or fusogenic) in which the DP107 and DP178 domains are complexed to each other. In the first model (FIG. 11A) this interaction occurs in the native state and in the second (FIG. 11B), it occurs during the fusogenic state. When triggered, the fusion complex in the model depicted in (A) is generated through formation of coiled-coil interactions in homologous DP107 domains resulting in an extended α-helix. This conformational change positions the fusion peptide for interaction with the cell membrane. In the second model (FIG. 11B), the fusogenic complex is stabilized by the association of the DP178 domain with the DP107 coiled-coil.

FIG. 12. Motif design using heptad repeat positioning of amino acids of known coiled-coils.

FIG. 13. Motif design using proposed heptad repeat positioning of amino acids of DP107 and DP178.

FIG. 14. Hybrid motif design crossing GCN4 and DP107.

FIG. 15. Hybrid motif design crossing GCN4 and DP178.

FIG. 16. Hybrid motif design 107x178x4, crossing DP107 and DP178. This motif was found to be the most consistent at identifying relevant DP107-like and DP178-like peptide regions.

FIG. 17. Hybrid motif design crossing GCN4, DP107, and DP178.

FIG. 18. Hybrid motif design ALLMOTI5 crossing GCN4, DP107, DP178, c-Fos c-Jun, c-Myc, and Flu Loop 36.

FIG. 19. PLZIP motifs designed to identify N-terminal proline-leucine zipper motifs.

FIG. 20. Search results for HIV-1 (BRU isolate) enveloped protein gp41. Sequence search motif designations: Spades ( custom character ): 107x178x4; Hearts (♥) ALLMOTI5; Clubs (): PLZIP; Diamonds (): transmembrane region (the putative transmembrane domains were identified using a PC/Gene program designed to search for such peptide regions). Asterisk (*): Lupas method. The amino acid sequences identified by each motif are bracketed by the respective characters. Representative sequences chosen based on 107x178x4 searches are underlined and in bold. DP107 and DP178 sequences are marked, and additionally double-underlined and italicized.

FIG. 21. Search results for human respiratory syncytial virus (RSV) strain A2 fusion glycoprotein F1. Sequence search motif designations are as in FIG. 20.

FIG. 22. Search results for simian immunodeficiency virus (SIV) enveloped protein gp41 (AGM3 isolate). Sequence search motif designations are as in FIG. 20.

FIG. 23. Search results for canine distemper virus (strain Onderstepoort) fusion glycoprotein 1. Sequence search motif designations are as in FIG. 20.

FIG. 24. Search results for newcastle disease virus (strain Australia-Victoria/32) fusion glycoprotein F1. Sequence search motif designations are as in FIG. 20.

FIG. 25. Search results for human parainfluenza 3 virus (strain NIH 47885) fusion fglycoprotein F1. Sequence search motif designations are as in FIG. 20.

FIG. 26. Search results for influenza A virus (strain A/AICHI/2/68) hemagglutinin precursor HA2. Sequence search designations are as in FIG. 20.

FIGS. 27A-D. Respiratory Syncytial Virus (RSV) peptide antiviral and circular dichroism data. FIGS. 27A-B: Peptides derived from the F2 DP178/DP107-like region. Antiviral and CD data. FIGS. 27C-D: Peptides derived from the F1 DP107-like region. Peptide and CD data.

Antiviral activity (AV) is represented by the following qualitative symbols:

“−”, negative antiviral activity;

“+/−”, antiviral activity at greater than 100 μg/ml;

“+”, antiviral activity at between 50-100 μg/ml;

“++”, antiviral activity at between 20-50 μg/ml;

“+++”, antiviral activity at between 1-20 μg/ml;

“++++”, antiviral activity at <1 μg/ml.

CD data, referring to the level of helicity is represented by the following qualitative symbol:

“−”, no helicity;

“+”, 25-50% helicity;

“++”, 50-75% helicity;

“+++”, 75-100% helicity.

IC₅₀refers to the concentration of peptide necessary to produce only 50% of the number of syncytial relative to infected control cultures containing no peptide. IC₅₀values were obtained using purified peptides only.

FIGS. 28A-B. Respiratory Syncytial Virus (RSV) DP178-like region (F1) peptide antiviral and CD data. Antiviral symbols, CD symbols, and IC50 are as in FIGS. 27A-D. IC₅₀values were obtained using purified peptides only.

FIGS. 29A-B. Peptides derived from the HPIV3 F1 DP107-like region. Peptide antiviral and CD data. Antiviral symbols, CD symbols, and IC₅₀are as in FIGS. 27A-D. Purified peptides were used to obtain IC₅₀values, except where the values are marked by an asterisk (*), in which cases, the IC₅₀values were obtained using a crude peptide preparation.

FIGS. 30A-B. Peptides derived from the HPIV3 F1 DP178-like region. Peptide antiviral and CD data. Antiviral symbols, CD symbols, and IC₅₀are as in FIGS. 27A-D. Purified peptides were used to obtain IC₅₀values, except where the values are marked by an asterisk (*), in which cases, the IC₅₀values were obtained using a crude peptide preparation.

FIG. 31. Motif search results for simian immunodeficiency virus (SIV) isolate MM251, enveloped polyprotein gp41. Sequence search designations are as in FIG. 20.

FIG. 32. Motif search results for Epstein-Barr Virus (Strain B95-8), glycoprotein gp110 precursor (designated gp115). BALF4. Sequence search designations are as in FIG. 20.

FIG. 33. Motif search results for Epstein-Barr Virus (Strain B95-8), BZLF1 trans-activator protein (designated EB1 or Zebra). Sequence search designations are as in FIG. 20. Additionally, “@” refers to a well known DNA binding domain and “+” refers to a well known dimerization domain, as defined by Flemington and Speck (Flemington, E. and Speck, S. H., 1990, Proc. Natl. Acad. Sci. USA 87:9459-9463).

FIG. 34. Motif search results for measles virus (strain Edmonston), fusion glycoprotein F1. Sequence search designations are as in FIG. 20.

FIG. 35. Motif search results for Hepatitis B Virus (Subtype AYW), major surface antigen precursor S. Sequence search designations are as in FIG. 20.

FIG. 36. Motif search results for simian Mason-Pfizer monkey virus, enveloped (TM) protein gp20. Sequence search designations are as in FIG. 20.

FIG. 37. Motif search results for Pseudomonas aerginosa, fimbrial protein (Pilin). Sequence search designations are as in FIG. 20.

FIG. 38. Motif search results for Neisseria gonorrhoeae fimbrial protein (Pilin). Sequence search designations are as in FIG. 20.

FIG. 39. Motif search results for Hemophilus influenzae fimbrial protein. Sequence search designations are as in FIG. 20.

FIG. 40. Motif search results for Staphylococcus aureus, toxic shock syndrome toxin-1. Sequence search designations are as in FIG. 20.

FIG. 41. Motif search results for Staphylococcus aureus enterotoxin Type E. Sequence search designations are as in FIG. 20.

FIG. 42. Motif search results for Staphylococcus aureus enterotoxin A. Sequence search designations are as in FIG. 20.

FIG. 43. Motif search results for Escherichia coli, heat labile enterotoxin A. Sequence search designations are as in FIG. 20.

FIG. 44. Motif search results for human c-fos proto-oncoprotein. Sequence search designations are as in FIG. 20.

FIG. 45. Motif search results for human lupus KU autoantigen protein P70. Sequence search designations are as in FIG. 20.

FIG. 46. Motif search results for human zinc finger protein 10. Sequence search designations are as in FIG. 20.

FIG. 47. Measles virus (MeV) fusion protein DP178-like region antiviral and CD data. Antiviral symbols, CD symbols, and IC₅₀are as in FIGS. 27A-D. IC₅₀values were obtained using purified peptides.

FIG. 48. Simian immunodeficiency virus (SIV) TM (fusion) protein DP178-like region antiviral data. Antiviral symbols are as in FIGS. 27A-D “NT”, not tested.

FIGS. 49A-C. DP178-derived peptide antiviral data. The peptides listed herein were derived from the region surrounding the HIV-1 BRU isolate DP178 region (e.g., gp41 amino acid residues 615-717).

In instances where peptides contained DP178 point mutations, the mutated amino acid residues are shown with a shaded background. In instances in which the test peptide has had an amino and/or carboxy-terminal group added or removed (apart from the standard amido- and acetyl-blocking groups found on such peptides), such modifications are indicated. FIG. 49A: The column to the immediate right of the name of the test peptide indicates the size of the test peptide and points out whether the peptide is derived from a one amino acid peptide “walk” across the DP178 region. The next column to the right indicates whether the test peptide contains a point mutation, while the column to its right indicates whether certain amino acid residues have been added to or removed from the DP178-derived amino acid sequence. FIG. 49B: The column to the immediate right of the test peptide name indicates whether the peptide represents a DP178 truncation, the next column to the right points out whether the peptide contains a point mutation, and the column to its right indicates whether the peptide contains amino acids which have been added to or removed from the DP178 sequence itself. FIG. 49C: The column to the immediate right of the test peptide name indicates whether the test peptide contains a point mutation, while the column to its right indicates whether amino acid residues have been added to or removed from the DP178 sequence itself. IC₅₀is as defined in FIGS. 27A-D, and IC₅₀values were obtained using purified peptides except where marked with an asterisk (*), in which case the IC₅₀was obtained using a crude peptide preparation.

FIG. 50. DP107 and DP107 gp41 region truncated peptide antiviral data. IC₅₀as defined in FIGS. 27A-D, and IC₅₀values were obtained using purified peptides except where marked with an asterisk (*), in which case the IC₅₀was obtained using a crude peptide preparation.

FIGS. 51A-B. Epstein-Barr virus Strain B95-8 BZLF1 DP178/DP107 analog region peptide walks and electrophoretic mobility shift assay results. The peptides (T-423 to T-446, FIG. 51A; T-447 to T-461, FIG. 51B) represent one amino acid residue “walks” through the EBV Zebra protein region from amino acid residue 173 to 246.

The amino acid residue within this region which corresponds to the first amino acid residue of each peptide is listed to the left of each peptide, while the amino acid residue within this region which corresponds to the last amino acid residue of each peptide is listed to the right of each peptide. The length of each test peptide is listed at the far right of each line, under the heading “Res”.

“ACT” refers to a test peptide's ability to inhibit Zebra binding to its response element. “+” refers to a visible, but incomplete, abrogation of the response element/Zebra homodimer complex; “+++” refers to a complete abrogation of the complex; and “−” represents a lack of complex disruption.

FIGS. 52A-B. Hepatitis B virus subtype AYW major surface antigen precursor S protein DP178/DP107 analog region and peptide walks. 52A depicts Domain I (S protein amino acid residues 174-220), which contains a potential DP178/DP107 analog region. In addition, peptides are listed which represent one amino acid peptide “walks” through domain I. 52B depicts Domain II (S protein amino acid residues 233-291), which contains a second potential DP178/DP107 analog region. In addition, peptides are listed which represent one amino acid peptide “walks” through domain II.

5. DETAILED DESCRIPTION OF THE INVENTION

Described herein are peptides which may exhibit antifusogenic activity, antiviral capability, and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. The peptides described include, first, DP178 (SEQ ID NO:1), a gp41-derived 36 amino acid peptide and fragments and analogs of DP178.

In addition, the peptides of the invention described herein include peptides which are DP107 analogs. DP107 (SEQ ID NO:25) is a 38 amino acid peptide corresponding to residues 558 to 595 of the HIV-1_LAItransmembrane (TM) gp41 protein. Such DP107 analogs may exhibit antifusogenic capability, antiviral activity or an ability to modulate intracellular processes involving coiled-coil structures.

Further, peptides of the invention include DP107 and DP178 are described herein having amino acid sequences recognized by the 107x178x4, ALLMOTI5, and PLZIP search motifs. Such motifs are also discussed.

Also described here are antifusogenic, antiviral, intracellular modulatory, and diagnostic uses of the peptides of the invention. Further, procedures are described for the use of the peptides of the invention for the identification of compounds exhibiting antifusogenic, antiviral or intracellular modulatory activity.

While not limited to any theory of operation, the following model is proposed to explain the potent anti-HIV activity of DP178, based, in part, on the experiments described in the Examples, infra. In the HIV protein, gp41, DP178 corresponds to a putative α-helix region located in the C-terminal end of the gp41 ectodomain, and appears to associate with a distal site on gp41 whose interactive structure is influenced by the leucine zipper motif, a coiled-coil structure, referred to as DP107. The association of these two domains may reflect a molecular linkage or “molecular clasp” intimately involved in the fusion process. It is of interest that mutations in the C-terminal α-helix motif of gp41 (i.e., the D178 domain) tend to enhance the fusion ability of gp41, whereas mutations in the leucine zipper region (i.e., the DP107 domain) decrease or abolish the fusion ability of the viral protein. It may be that the leucine zipper motif is involved in membrane fusion while the C-terminal α-helix motif serves as a molecular safety to regulate the availability of the leucine zipper during virus-induced membrane fusion.

On the basis of the foregoing, two models are proposed of gp41-mediated membrane fusion which are schematically shown in FIGS. 11A-B. The reason for proposing two models is that the temporal nature of the interaction between the regions defined by DP107 and DP178 cannot, as yet, be pinpointed. Each model envisions two conformations for gp41—one in a “native” state as it might be found on a resting virion. The other in a “fusogenic” state to reflect conformational changes triggered following binding of gp120 to CD4 and just prior to fusion with the target cell membrane. The strong binding affinity between gp120 and CD4 may actually represent the trigger for the fusion process obviating the need for a pH change such as occurs for viruses that fuse within intracellular vesicles. The two major features of both models are: (1) the leucine zipper sequences (DP107) in each chain of oligomeric enveloped are held apart in the native state and are only allowed access to one another in the fusogenic state so as to form the extremely stable coiled-coils, and (2) association of the DP178 and DP107 sites as they exist in gp41 occur either in the native or fusogenic state. FIG. 11A depicts DP178/DP107 interaction in the native state as a molecular clasp. On the other hand, if one assumes that the most stable form of the enveloped occurs in the fusogenic state, the model in FIG. 11B can be considered.

When synthesized as peptides, both DP107 and DP178 are potent inhibitors of HIV infection and fusion, probably by virtue of their ability to form complexes with viral gp41 and interfere with its fusogenic process; e.g., during the structural transition of the viral protein from the native structure to the fusogenic state, the DP178 and DP107 peptides may gain access to their respective binding sites on the viral gp41, and exert a disruptive influence. DP107 peptides which demonstrate anti-HIV activity are described in Applicants' co-pending application Ser. No. 08/264,531, filed Jun. 23, 1994, which is incorporated by reference herein in its entirety.

As shown in the Examples, infra, a truncated recombinant gp41 protein corresponding to the ectodomain of gp41 containing both DP107 and DP178 domains (excluding the fusion peptide, transmembrane region and cytoplasmic domain of gp41) did not inhibit HIV-1 induced fusion. However, when a single mutation was introduced to disrupt the coiled-coil structure of the DP107 domain—a mutation which results in a total loss of biological activity of DP107 peptides—the inactive recombinant protein was transformed to an active inhibitor of HIV-1 induced fusion. This transformation may result from liberation of the potent DP178 domain from a molecular clasp with the leucine zipper, DP107 domain.

For clarity of discussion, the invention will be described primarily for DP178 peptide inhibitors of HIV. However, the principles may be analogously applied to other viruses, both enveloped and nonenveloped, and to other non-viral organisms.

5.1. DP178 and DP178-like Peptides

The DP178 peptide (SEQ ID:1) of the invention corresponds to amino acid residues 638 to 673 of the transmembrane protein gp41 from the HIV-1_LAIisolate, and has the 36 amino acid sequence (reading from amino to carboxy terminus):

NH₂-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-COOH (SEQ ID:1)

In addition to the full-length DP178 (SEQ ID:1) 36-mer, the peptides of the invention may include truncations of the DP178 (SEQ ID:1) peptide which exhibit antifusogenic activity, antiviral activity and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. Truncations of DP178 (SEQ ID:1) peptides may comprise peptides of between 3 and 36 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 36-mer polypeptide), as shown in Tables I and IA, below. Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH₂) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.

TABLE I

DP178 (SEQ ID: 1) CARBOXY TRUNCATIONS

X-YTS-Z

X-YTSL-Z

X-YTSLI-Z

X-YTSLIH-Z

X-YTSLIHS-Z

X-YTSLIHSL-Z

X-YTSLIHSLI-Z

X-YTSLIHSLIE-Z

X-YTSLIHSLIEE-Z

X-YTSLIHSLIEES-Z

X-YTSLIHSLIEESQ-Z

X-YTSLIHSLIEESQN-Z

X-YTSLIHSLIEESQNQ-Z

X-YTSLIHSLIEESQNQQ-Z

X-YTSLIHSLIEESQNQQE-Z

X-YTSLIHSLIEESQNQQEK-Z

X-YTSLIHSLIEESQNQQEKN-Z

X-YTSLIHSLIEESQNQQEKNE-Z

X-YTSLIHSLIEESQNQQEKNEQ-Z

X-YTSLIHSLIEESQNQQEKNEQE-Z

X-YTSLIHSLIEESQNQQEKNEQEL-Z

X-YTSLIHSLIEESQNQQEKNEQELL-Z

X-YTSLIHSLIEESQNQQEKNEQELLE-Z

X-YTSLIHSLIEESQNQQEKNEQELLEL-Z

X-YTSLIHSLIEESQNQQEKNEQELLELD-Z

X-YTSLIHSLIEESQNQQEKNEQELLELDK-Z

X-YTSLIHSLIEESQNQQEKNEQELLELDKW-Z

X-YTSLIHSLIEESQNQQEKNEQELLELDKWA-Z

X-YTSLIHSLIEESQNQQEKNEQELLELDKWAS-Z

X-YTSLIHSLIEESQNQQEKNEQELLELDKWASL-Z

X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLW-Z

X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWN-Z

X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z

The one letter amino acid code is used.

Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE IA

DP178 (SEQ ID: 1) AMINO TRUNCATIONS

X-NWF-Z

X-WNWF-Z

X-LWNWF-Z

X-SLWNWF-Z

X-ASLWNWF-Z

X-WASLWNWF-Z

X-KWASLWNWF-Z

X-DKWASLWNWF-Z

X-LDKWASLWNWF-Z

X-ELDKWASLWNWF-Z

X-LELDKWASLWNWF-Z

X-LLELDKWASLWNWF-Z

X-ELLELDKWASLWNWF-Z

X-QELLELDKWASLWNWF-Z

X-EQELLELDKWASLWNWF-Z

X-NEQELLELDKWASLWNWF-Z

X-KNEQELLELDKWASLWNWF-Z

X-EKNEQELLELDKWASLWNWF-Z

X-QEKNEQELLELDKWASLWNWF-Z

X-QQEKNEQELLELDKWASLWNWF-Z

X-NQQEKNEQELLELDKWASLWNWF-Z

X-QNQQEKNEQELLELDKWASLWNWF-Z

X-SQNQQEKNEQELLELDKWASLWNWF-Z

X-ESQNQQEKNEQELLELDKWASLWNWF-Z

X-EESQNQQEKNEQELLELDKWASLWNWF-Z

X-IEESQNQQEKNEQELLELDKWASLWNWF-Z

X-LIEESQNQQEKNEQELLELDKWASLWNWF-Z

X-SLIEESQNQQEKNEQELLELDKWASLWNWF-Z

X-HSLIEESQNQQEKNEQELLELDKWASLWNWF-Z

X-IHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z

X-LIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z

X-SLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z

X-TSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z

X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z

The one letter amino acid code is used.

Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

The peptides of the invention also include DP178-like peptides. “DP178-like”, as used herein, refers, first, to DP178 and DP178 truncations which contain one or more amino acid substitutions, insertions and/or deletions. Second, “DP-178-like” refers to peptide sequences identified or recognized by the ALLMOTI5, 107x178x4 and PLZIP search motifs described herein, having structural and/or amino acid motif similarity to DP178. The DP178-like peptides of the invention may exhibit antifusogenic or antiviral activity, or may exhibit the ability to modulate intracellular processes involving coiled-coil peptides. Further, such DP178-like peptides may possess additional advantageous features, such as, for example, increased bioavailability, and/or stability, or reduced host immune recognition.

HIV-1 and HIV-2 enveloped proteins are structurally distinct, but there exists a striking amino acid conservation within the DP178-corresponding regions of HIV-1 and HIV-2. The amino acid conservation is of a periodic nature, suggesting some conservation of structure and/or function. Therefore, one possible class of amino acid substitutions would include those amino acid changes which are predicted to stabilize the structure of the DP178 peptides of the invention. Utilizing the DP178 and DP178 analog sequences described herein, the skilled artisan can readily compile DP178 consensus sequences and ascertain from these, conserved amino acid residues which would represent preferred amino acid substitutions.

The amino acid substitutions may be of a conserved or non-conserved nature. Conserved amino acid substitutions consist of replacing one or more amino acids of the DP178 (SEQ ID:1) peptide sequence with amino acids of similar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to aspartic acid (D) amino acid substitution. Non-conserved substitutions consist of replacing one or more amino acids of the DP178 (SEQ ID:1) peptide sequence with amino acids possessing dissimilar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to valine (V) substitution.

Amino acid insertions may consist of single amino acid residues or stretches of residues. The insertions may be made at the carboxy or amino terminal end of the DP178 or DP178 truncated peptides, as well as at a position internal to the peptide. Such insertions will generally range from 2 to 15 amino acids in length. It is contemplated that insertions made at either the carboxy or amino terminus of the peptide of interest may be of a broader size range, with about 2 to about 50 amino acids being preferred. One or more such insertions may be introduced into DP178 (SEQ.ID:1) or DP178 truncations, as long as such insertions result in peptides which may still be recognized by the 107x178x4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.

Preferred amino or carboxy terminal insertions are peptides ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP178 gp41 amino acid sequence, respectively. Thus, a preferred amino terminal or carboxy terminal amino acid insertion would contain gp41 amino acid sequences found immediately amino to or carboxy to the DP178 region of the gp41 protein.

Deletions of DP178 (SEQ ID:1) or DP178 truncations are also within the scope of the invention. Such deletions consist of the removal of one or more amino acids from the DP178 or DP178-like peptide sequence, with the lower limit length of the resulting peptide sequence being 4 to 6 amino acids. Such deletions may involve a single contiguous or greater than one discrete portion of the peptide sequences. One or more such deletions may be introduced into DP178 (SEQ.ID:1) or DP178 truncations, as long as such deletions result in peptides which may still be recognized by the 107x178x4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.

DP178 analogs are further described, below, in Section 5.3.

5.2. DP107 and DP107-like Peptides

Further, the peptides of the invention include peptides having amino acid sequences corresponding to DP107 analogs. DP107 is a 38 amino acid peptide which exhibits potent antiviral activity, and corresponds to residues 558 to 595 of HIV-L1_LAItransmembrane (TM) gp41 protein, as shown here:

NH₂-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-COOH (SEQ ID:25)

In addition to the full-length DP107 (SEQ ID:25) 38-mer, the peptides of the invention may include truncations of the DP107 (SEQ ID:25) peptide which exhibit antifusogenic activity, antiviral activity and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. Truncations of DP107 (SEQ ID:25) peptides may comprise peptides of between 3 and 38 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 38-mer polypeptide), as shown in Tables II and IIA, below. Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH₂) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.

TABLE II

DP107 CARBOXY TRUNCATIONS

X-NNL-Z

X-NNLL-Z

X-NNLLR-Z

X-NNLLRA-Z

X-NNLLRAI-Z

X-NNLLRAIE-Z

X-NNLLRAIEA-Z

X-NNLLRAIEAQ-Z

X-NNLLRAIEAQQ-Z

X-NNLLRAIEAQQH-Z

X-NNLLRAIEAQQHL-Z

X-NNLLRAIEAQQHLL-Z

X-NNLLRAIEAQQHLLQ-Z

X-NNLLRAIEAQQHLLQL-Z

X-NNLLRAIEAQQHLLQLT-Z

X-NNLLRAIEAQQHLLQLTV-Z

X-NNLLRAIEAQQHLLQLTVW-Z

X-NNLLRAIEAQQHLLQLTVWQ-Z

X-NNLLRAIEAQQHLLQLTVWQI-Z

X-NNLLRAIEAQQHLLQLTVWQIK-Z

X-NNLLRAIEAQQHLLQLTVWQIKQ-Z

X-NNLLRAIEAQQHLLQLTVWQIKQL-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQ-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQA-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQAR-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARI-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARIL-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILA-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAV-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVE-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVER-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERY-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYL-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLK-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKD-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

The one letter amino acid code is used.

TABLE IIA

DP178 (SEQ ID:25) AMINO TRUNCATIONS

X-KDQ-Z

X-LKDQ-Z

X-YLKDQ-Z

X-RYLKDQ-Z

X-ERYLKDQ-Z

X-VERYLKDQ-Z

X-AVERYLKDQ-Z

X-LAVERYLKDQ-Z

X-ILAVERYLKDQ-Z

X-RILAVERYLKDQ-Z

X-ARILAVERYLKDQ-Z

X-QARILAVERYLKDQ-Z

X-LQARILAVERYLKDQ-Z

X-QLQARILAVERYLKDQ-Z

X-KQLQARILAVERYLKDQ-Z

X-IKQLQARILAVERYLKDQ-Z

X-QIKQLQARILAVERYLKDQ-Z

X-WQIKQLQARILAVERYLKDQ-Z

X-VWQIKQLQARILAVERYLKDQ-Z

X-TVWQIKQLQARILAVERYLKDQ-Z

X-LTVWQIKQLQARILAVERYLKDQ-Z

X-QLTVWQIKQLQARILAVERYLKDQ-Z

X-LQLTVWQIKQLQARILAVERYLKDQ-Z

X-LLQLTVWQIKQLQARILAVERYLKDQ-Z

X-HLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-QHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-QQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-AQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-EAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-IEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-AIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-RAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-LRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-LLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-NLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z

The one letter amino acid code is used.

Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl group; a macromolecula carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

The peptides of the invention also include DP107-like peptides. “DP107-like”, as used herein, refers, first, to DP107 and DP107 truncations which contain one or more amino acid substitutions, insertions and/or deletions. Second, “DP-107-like” refers to peptide sequences identified or recognized by the ALLMOTI5, 107x178x4 and PLZIP search motifs described herein, having structural and/or amino acid motif similarity to DP107. The DP107-like peptides of the invention may exhibit antifusogenic or antiviral activity, or may exhibit the ability to modulate intracellular processes involving coiled-coil peptides. Further, such DP107-like peptides may possess additional advantageous features, such as, for example, increased bioavailability, and/or stability, or reduced host immune recognition.

HIV-1 and HIV-2 enveloped proteins are structurally distinct, but there exists a striking amino acid conservation within the DP107-corresponding regions of HIV-1 and HIV-2. The amino acid conservation is of a periodic nature, suggesting some conservation of structure and/or function. Therefore, one possible class of amino acid substitutions would include those amino acid changes which are predicted to stabilize the structure of the DP107 peptides of the invention. Utilizing the DP107 and DP107 analog sequences described herein, the skilled artisan can readily compile DP107 consensus sequences and ascertain from these, conserved amino acid residues which would represent preferred amino acid substitutions.

The amino acid substitutions may be of a conserved or non-conserved nature. Conserved amino acid substitutions consist of replacing one or more amino acids of the DP107 (SEQ ID:25) peptide sequence with amino acids of similar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to aspartic acid (D) amino acid substitution. Non-conserved substitutions consist of replacing one or more amino acids of the DP107 (SEQ ID:25) peptide sequence with amino acids possessing dissimilar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to valine (V) substitution.

Amino acid insertions may consist of single amino acid residues or stretches of residues. The insertions may be made at the carboxy or amino terminal end of the DP107 or DP107 truncated peptides, as well as at a position internal to the peptide. Such insertions will generally range from 2 to 15 amino acids in length. It is contemplated that insertions made at either the carboxy or amino terminus of the peptide of interest may be of a broader size range, with about 2 to about 50 amino acids being preferred. One or more such insertions may be introduced into DP107 (SEQ.ID:25) or DP107 truncations, as long as such insertions result in peptides which may still be recognized by the 107x178x4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.

Preferred amino or carboxy terminal insertions are peptides ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP107 gp41 amino acid sequence, respectively. Thus, a preferred amino terminal or carboxy terminal amino acid insertion would contain gp41 amino acid sequences found immediately amino to or carboxy to the DP107 region of the gp41 protein.

Deletions of DP107 (SEQ ID:25) or DP178 truncations are also within the scope of the invention. Such deletions consist of the removal of one or more amino acids from the DP107 or DP107-like peptide sequence, with the lower limit length of the resulting peptide sequence being 4 to 6 amino acids. Such deletions may involve a single contiguous or greater than one discrete portion of the peptide sequences One or more such deletions may be introduced into DP107 (SEQ.ID:25) or DP107 truncations, as long as such deletions result in peptides which may still be recognized by the 107x178x4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.

DP107 and DP107 truncations are more fully described in Applicants' co-pending U.S. patent application Ser. No. 08/374,666, filed Jan. 27, 1995, and which is incorporated herein by reference in its entirety. DP107 analogs are further described, below, in Section 5.3.

5.3. DP107 and DP178 Aanalogs

Peptides corresponding to analogs of the DP178, DP178 truncations, DP107 and DP107 truncation sequences of the invention, described, above, in Sections 5.1 and 5.2 may be found in other viruses, including, for example, non-HIV-1_LAIenveloped viruses, non-enveloped viruses and other non-viral organisms.

The term “analog”, as used herein, refers to a peptide which is recognized or identified via the 107x178x4, ALLMOTI5 and/or PLZIP search strategies discussed below. Further, such peptides may exhibit antifusogenic capability, antiviral activity, or the ability to modulate intracellular processes involving coiled-coil structures.

Such DP178 and DP107 analogs may, for example, correspond to peptide sequences present in TM proteins of enveloped viruses and may, additionally correspond to peptide sequences present in non enveloped and non-viral organisms. Such peptides may exhibit antifusogenic activity, antiviral activity, most particularly antiviral activity which is specific to the virus in which their native sequences are found, or may exhibit an ability to modulate intracellular processes involving coiled-coil peptide structures.

DP178 analogs are peptides whose amino acid sequences are comprised of the amino acid sequences of peptide regions of, for example, other (i.e., other than HIV-1_LAI) viruses that correspond to the gp41 peptide region from which DP178 (SEQ ID:1) was derived. Such viruses may include, but are not limited to, other HIV-1 isolates and HIV-2 isolates. DP178 analogs derived from the corresponding gp41 peptide region of other (i.e., non HIV-1_LAI) HIV-1 isolates may include, for example, peptide sequences as shown below.

NH₂-YTNTIYTLLEESQNQQEKNEQELLELDKWASLWNWF-COOH (DP-185; SEQ ID:3);
NH₂-YTGIIYNLLEESQNQQEKNEQELLELDKWANLWNWF-COOH (SEQ ID:4);
NH₂-YTSLIYSLLEKSQIQQEKNEQELLELDKWASLWNWF-COOH (SEQ ID:5).

SEQ ID:3 (DP-185), SEQ ID:4, and SEQ ID:5 are derived from HIV-1_SF2, HIV-1_RF, and HIV-1_MNisolates, respectively. Underlined amino acid residues refer to those residues that differ from the corresponding position in the DP178 (SEQ ID:1) peptide. One such DP178 analog, DP-185 (SEQ ID:3), is described in the Example presented in Section 6, below, where it is demonstrated that DP-185 (SEQ ID:3) exhibits antiviral activity. The DP178 analogs of the invention may also include truncations, as described above. Further, the analogs of the invention modifications such those described for DP178 analogs in Section 5.1., above. It is preferred that the DP178 analogs of the invention represent peptides whose amino acid sequences correspond to the DP178 region of the gp41protein, it is also contemplated that the peptides of the invention may, additionally, include amino sequences, ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP178 amino acid sequence.

Striking similarities, as shown in FIG. 1, exist within the regions of HIV-1 and HIV-2 isolates which correspond to the DP178 sequence. A DP178 analog derived from the HIV-2_NIHZisolate has the 36 amino acid sequence (reading from amino to carboxy terminus):

NH₂-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-COOH (SEQ ID:7)

Table III and Table IV show some possible truncations of the HIV-2_NIHZDP178 analog, which may comprise peptides of between 3 and 36 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 36-mer polypeptide). Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH₂) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.

TABLE III

HIV-2_NIHZDP178 analog carboxy truncations.

X-LEA-Z

X-LEAN-Z

X-LEANI-Z

X-LEANIS-Z

X-LEANISQ-Z

X-LEANISQS-Z

X-LEANISQSL-Z

X-LEANISQSLE-Z

X-LEANISQSLEQ-Z

X-LEANISQSLEQA-Z

X-LEANISQSLEQAQ-Z

X-LEANISQSLEQAQI-Z

X-LEANISQSLEQAQIQ-Z

X-LEANISQSLEQAQIQQ-Z

X-LEANISQSLEQAQIQQE-Z

X-LEANISQSLEQAQIQQEK-Z

X-LEANISQSLEQAQIQQEKN-Z

X-LEANISQSLEQAQIQQEKNM-Z

X-LEANISQSLEQAQIQQEKNMY-Z

X-LEANISQSLEQAQIQQEKNMYE-Z

X-LEANISQSLEQAQIQQEKNMYEL-Z

X-LEANISQSLEQAQIQQEKNMYELQ-Z

X-LEANISQSLEQAQIQQEKNMYELQK-Z

X-LEANISQSLEQAQIQQEKNMYELQKL-Z

X-LEANISQSLEQAQIQQEKNMYELQKLN-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNS-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNSW-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNSWD-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNSWDV-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVF-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFT-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTN-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNW-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

The one letter amino acid code is used.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE IV

HIV-2_NIHZDP178 analog amino truncations.

X-NWL-Z

X-TNWL-Z

X-FTNWL-Z

X-VFTNWL-Z

X-DVFTNWL-Z

X-WDVFTNWL-Z

X-SWDVFTNWL-Z

X-NSWDVFTNWL-Z

X-LNSWDVFTNWL-Z

X-KLNSWDVFTNWL-Z

X-QKLNSWDVFTNWL-Z

X-LQKLNSWDVFTNWL-Z

X-ELQKLNSWDVFTNWL-Z

X-YELQKLNSWDVFTNWL-Z

X-MYELQKLNSWDVFTNWL-Z

X-NMYELQKLNSWDVFTNWL-Z

X-KNMYELQKLNSWDVFTNWL-Z

X-EKNMYELQKLNSWDVFTNWL-Z

X-QEKNMYELQKLNSWDVFTNWL-Z

X-QQEKNMYELQKLNSWDVFTNWL-Z

X-IQQEKNMYELQKLNSWDVFTNWL-Z

X-QIQQEKNMYELQKLNSWDVFTNWL-Z

X-AQIQQEKNMYELQKLNSWDVFTNWL-Z

X-QAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-EQAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-LEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-SLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-QSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-SQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-ISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-NISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-ANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-EANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z

The one letter amino acid code is used.

DP178 and DP107 analogs are recognized or identified, for example, by utilizing one or more of the 107x178x4, ALLMOTI5 or PLZIP computer-assisted search strategies described and demonstrated, below, in the Examples presented in Sections 9 through 16 and 19 through 25. The search strategy identifies additional peptide regions which are predicted to have structural and/or amino acid sequence features similar to those of DP107 and/or DP178.

The search strategies are described fully, below, in the Example presented in Section 9. While this search strategy is based, in part, on a primary amino acid motif deduced from DP107 and DP178, it is not based solely on searching for primary amino acid sequence homologies, as such protein sequence homologies exist within, but not between major groups of viruses. For example, primary amino acid sequence homology is high within the TM protein of different strains of HIV-1 or within the TM protein of different isolates of simian immunodeficiency virus (SIV). Primary amino acid sequence homology between HIV-1 and SIV, however, is low enough so as not to be useful. It is not possible, therefore, to find peptide regions similar to DP107 or DP178 within other viruses, or within non-viral organisms, whether structurally, or otherwise, based on primary sequence homology, alone.

Further, while it would be potentially useful to identify primary sequence arrangements of amino acids based on, for example, the physical chemical characteristics of different classes of amino acids rather than based on the specific amino acids themselves, such search strategies have, until now, proven inadequate. For example, a computer algorithm designed by Lupas et al. to identify coiled-coil propensities of regions within proteins (Lupas, A., et al., 1991 Science 252:1162-1164) is inadequate for identifying protein regions analogous to DP107 or DP178.

Specifically, analysis of HIV-1 gp160 (containing both gp120 and gp41) using the Lupas algorithm does not identify the coiled-coil region within DP107. It does, however, identify a region within DP178 beginning eight amino acids N-terminal to the start of DP178 and ending eight amino acids from the C-terminus. The DP107 peptide has been shown experimentally to form a stable coiled coil. A search based on the Lupas search algorithm, therefore, would not have identified the DP107 coiled-coil region. Conversely, the Lupas algorithm identified the DP178 region as a potential coiled-coil motif. However, the peptide derived from the DP178 region failed to form a coiled coil in solution.

A possible explanation for the inability of the Lupas search algorithm to accurately identify coiled-coil sequences within the HIV-1 TM, is that the Lupas algorithm is based on the structure of coiled coils from proteins that are not structurally or functionally similar to the TM proteins of viruses, antiviral peptides (e.g. DP107 and DP178) of which are an object of this invention.

The computer search strategy of the invention, as demonstrated in the Examples presented below, in Sections 9 through 16 and 19 through 25, successfully identifies regions of proteins similar to DP107 or DP178. This search strategy was designed to be used with a commercially-available sequence database package, preferably PC/Gene.

A series of search motifs, the 107x178x4, ALLMOTI5 and PLZIP motifs, were designed and engineered to range in stringency from strict to broad, as discussed in this Section and in Section 9, with 107x178x4 being preferred. The sequences identified via such search motifs, such as those listed in Tables V-XIV, below, potentially exhibit antifusogenic, such as antiviral, activity, may additionally be useful in the identification of antifusogenic, such as antiviral, compounds, and are intended to be within the scope of the invention.

Coiled-coiled sequences are thought to consist of heptad amino acid repeats. For ease of description, the amino acid positions within the heptad repeats are sometimes referred to as A through G, with the first position being A, the second B, etc. The motifs used to identify DP107-like and DP178-like sequences herein are designed to specifically search for and identify such heptad repeats. In the descriptions of each of the motifs described, below, amino acids enclosed by brackets , i.e., [ ], designate the only amino acid residues that are acceptable at the given position, while amino acids enclosed by braces, i.e., { }, designate the only amino acids which are unacceptable at the given heptad position. When a set of bracketed or braced amino acids is followed by a number in parentheses i.e., ( ), it refers to the number of subsequent amino acid positions for which the designated set of amino acids hold, e.g, a (2) means “for the next two heptad amino acid positions”.

The ALLMOTI5 is written as follows:

{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-
{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-
{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-
{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-
{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-

Translating this motif, it would read: “at the first (A) position of the heptad, any amino acid residue except C, D, G, H, or P is acceptable, at the next two (B, C) amino acid positions, any amino acid residue except C, F, or P is acceptable, at the fourth heptad position (D), any amino acid residue except C, D, G, H, or P is acceptable, at the next three (E, F, G) amino acid positions, any amino acid residue except C, F, or P is acceptable. This motif is designed to search for five consecutive heptad repeats (thus the repeat of the first line five times), meaning that it searches for 35-mer sized peptides. It may also be designed to search for 28-mers, by only repeating the initial motif four times. With respect to the ALLMOTI5 motif, a 35-mer search is preferred. Those viral (non-bacteriophage) sequences identified via such an ALLMOTI5 motif are listed in Table V, below, at the end of this Section. The viral sequences listed in Table V potentially exhibit antiviral activity, may be useful in the the identification of antiviral compounds, and are intended to be within the scope of the invention. In those instances wherein a single gene exhibits greater than one sequence recognized by the ALLMOTI5 search motif, the amino a acid residue numbers of these sequences are listed under “Area 2”, Area 3”, etc. This convention is used for each of the Tables listed, below, at the end of this Section.

The 107x178x4 motif is written as follows:

[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)-
[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)-
[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)-
[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)-

Translating this motif, it would read: “at the first (A) position of the heptad, only amino acid residue E, F, I, K, L, N, Q, S, T, V, W, or Y is acceptable, at the next two (B,C) amino acid positions, any amino acid residue except C, F, M or P is acceptable, at the fourth position (D), only amino acid residue E, F, I, K, L, N, Q, S, T, V, W, or Y is acceptable, at the next three (E, F, G) amino acid positions, any amino acid residue except C, F, M or P is acceptable. This motif is designed to search for four consecutive heptad repeats (thus the repeat of the first line four times), meaning that it searches for 28-mer sized peptides. It may also be designed to search for 35-mers, by repeating the initial motif five times. With respect to the 107x178x4 motif, a 28-mer search is preferred.

Those viral (non-bacteriophage) sequences identified via such a 107x178x4 motif are listed in Table VI, below, at the end of this Section, with those viral (non-bacteriophage) sequences listed in Table VII, below at the end of this Section, being preferred.

The 107x178x4 search motif was also utilized to identify non-viral procaryotic protein sequences, as listed in Table VIII, below, at the end of this Section. Further, this search motif was used to reveal a number of human proteins. The results of this human protein 107x178x4 search is listed in Table IX, below, at the end of this Section. The sequences listed in Tables VIII and IX, therefore, reveal peptides which may be useful as antifusogenic compounds or in the identification of antifusogenic compounds, and are intended to be within the scope of the invention.

The PLZIP series of motifs are as listed in FIG. 19. These motifs are designed to identify leucine zipper coiled-coil like heptads wherein at least one proline residue is present at some predefined distance N-terminal to the repeat. These PLZIP motifs find regions of proteins with similarities to HIV-1 DP178 generally located just N-terminal to the transmembrane anchor. These motifs may be translated according to the same convention described above. Each line depicted in FIG. 19 represents a single, complete search motif. “X” in these motifs refers to any amino acid residue. In instances wherein a motif contains two numbers within parentheses, this refers to a variable number of amino acid residues. For example, X (1, 12) is translated to “the next one to twelve amino acid residues, inclusive, may be any amino acid”.

Tables X through XIV, below, at the end of this Section, list sequences identified via searches conducted with such PLZIP motifs. Specifically, Table X lists viral sequences identified via PCTLZIP, PLCTLZIP and P2CTLZIP search motifs, Table XI lists viral sequences identified via P3CTLZIP, P4CTLZIP, P5CTLZIP and P6CTLZIP search motifs, Table XII lsts viral sequences identified via P7CTLZIP, P8CTLZIP and P9CTLZIP search motifs, Table XIII lists viral sequences identified via P12LZIPC searches and Table XIV lists viral sequences identified via P23TLZIPC search motifs The viral sequences listed in these tables represent peptides which potentially exhibit antiviral activity, may be useful in the identification of antiviral compounds, and are intended to be within the scope of the invention.

The Examples presented in Sections 17, 18, 26 and 27 below, demonstrate that viral sequences identified via the motif searches described herein identify substantial antiviral characteristics. Specifically, the Example presented in Section 17 describes peptides with anti-respiratory syncytial virus activity, the Example presented in Section 18 describes peptides with anti-parainfluenza virus activity, the Example presented in Section 26 describes peptides with anti-measles virus activity and the Example presented in Section 27 describes peptides with anti-simian immunodeficiency virus activity.

The DP107 and DP178 analogs may, further, contain any of the additional groups described for DP178, above, in Section 5.1. For example, these peptides may include any of the additional amino-terminal groups as described above for “X” groups, and may also include any of the carboxy-terminal groups as described, above, for “Z” groups.

Additionally, truncations of the identified DP107 and DP178 peptides are among the peptides of the invention. Further, such DP107 and DP178 analogs and DP107/DP178 analog truncations may exhibit one or more amino acid substitutions, insertion, and/or deletions. The DP178 analog amino acid substitutions, insertions and deletions, are as described, above, for DP178-like peptides in Section 5.1. The DP-107 analog amino acid substitutions, insertions and deletions are also as described, above, for DP107-like peptides in Section 5.2.

Tables XV through XXII, below, present representative examples of such DP107/DP178 truncations. Specifically, Table XV presents Respiratory Syncytial Virus F1 region DP107 analog carboxy truncations, Table XVI presents Respiratory Syncytial Virus F1 region DP107 analog amino truncations, Table XVII presents Respiratory Syncytial Virus F1 region DP178 analog carboxy truncations, Table XVIII presents Respiratory Syncytial Virus F1region DP178 analog amino truncations, Table XIX presents Human Parainfluenza Virus 3 F1 region DP178 analog carboxy truncations, Table XX presents Human Parainfluenza Virus 3 F1 region DP178 analog amino truncations, Table XXI presents Human Parainfluenza Virus 3 F1 region DP107 analog carboxy truncations and Table XXII presents Human Parainfluenza Virus 3 F1region DP107 analog amino truncations. Further, Table XXIII, below, presents DP107/DP178 analogs and analog truncations which exhibit substantial antiviral activity. These antiviral peptides are grouped according to the specific virus which they inhibit, including respiratory syncytial virus, human parainfluenza virus 3, simian immunodeficiency virus and measles virus.

TABLE V

ALLMOTI5 SEARCH RESULTS SUMMARY FOR ALL VIRAL (NON-BACTERIOPHAGE) PROTEINS

PCGENE
ALLMOTI5
All Viruses (no bacteriophages)

FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8

P170K_TRVPS
POTENTIAL 170 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PSG)
113-153

P194K_TRVSY
POTENTIAL 194 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN SYM
144-178
214-248
391-446
644-678
1045-
1135-
1335-
1618-

1079
1176
1376
1656

P55KD_HSV6U
55 8 KD PROTEIN
HERPES SIMPLEX VIRUS
228-262

(TYPE 6/STRAIN UGANDA-1102)

PAANT_HDVAM
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
3-48
100-144

PAANT_HDVD3
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE D380)
7-48
100-144

PAANT_HDVTT
DELTA ANTIGEN (ALPHA ANTIGEN)
HEPATITIS DELTA VIRUS (ISOLATE ITALIAN)
3-48
100-144

PAANT_HDVL1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE LEBANON-1)
3-48

PAANT_HDVM1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
3-48
100-144

(ISOLATE JAPANESE M-1)

PAANT_HDVM2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
3-48
100-144

(ISOLATE JAPANESE M-2)

PAANT_HDVNA
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE NAURU)
3-48
100-144

PAANT_HDVS1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
1-49
100-144

(ISOLATE JAPANESE S-1)

PAANT_HDVS2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
1-49
100-144

(ISOLATE JAPANESE S-2)

PAANT_HDVWO
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
3-48
100-144

(ISOLATE WOODCHUCK)

PAT3H_FOWPM
ANTITHROMBIN-III HOMOLOG
FOWLPOX VIRUS (ISOLATE HP-438)
71-110

PAT11_VACCV
94 KD A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
14-57
420-564
570-625

PAT11_VARV
81 KD A-TYPE INCLUSION PROTEIN
VARIOLA VIRUS
425-525
531-565
571-628

PAT12_HSV11
ALPHA TRANS-INDUCING FACTOR
HERPES SIMPLEX VIRUS (TYPE 1)
304-345

PAT12_HSV1F
ALPHA TRANS-INDUCING FACTOR
HERPES SIMPLEX VIRUS (TYPE 1)
102-139
304-345

PAT12_HSVEB
ALPHA TRANS-INDUCING FACTOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
101-147
268-331

PAT12_VACCC
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
79-124
219-263

PAT12_VACCV
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS
79-124

PAT12_VZVD
ALPHA TRANS-INDUCING FACTOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
298-361
395-429

PAT13_VACCV
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS
51-95

PATIN_HSV23
ALPHA TRANS-INDUCING PROTEIN (VMW65)
HERPES SIMPLEX VIRUS (TYPE 2)
178-219
324-381

PATIN_HSV2H
ALPHA TRANS-INDUCING PROTEIN (VMW65)
HERPES SIMPLEX VIRUS (TYPE 2)
177-222
324-381

PATIN_HSVBP
ALPHA TRANS-INDUCING PROTEIN
BOVINE HERPESVIRUS TYPE 1
195-256

PATIN_HSVEB
ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 1
241-289

PATIN_VZVD
ALPHA TRANS-INDUCING PROTEIN (
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
206-252

PATI_COWPX
A-TYPE INCLUSION PROTEIN
COWPOX VIRUS
14-57
426-526
532-566
572-629
803-989
1106-

1150

PBDL2_EBV
PROTEIN BDLF2
EPSTEIN-BARR VIRUS (STRAIN B95-8)
90-131

PBRL1_EBV
TRANSCRIPTION ACTIVATOR BRLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
150-187

PCOA1_POVBA
COAT PROTEIN VP1
POLYOMAVIRUS BK
107-141

PCOA1_POVBK
COAT PROTEIN VP1
POLYOMAVIRUS BK
107-141

PCOA1_POVHA
COAT PROTEIN VP1
HAMSTER POLYOMAVIRUS
159-195

PCOA1_SV40
COAT PROTEIN VP1
SIMIAN VIRUS 40
109-143

PCOA2_BFDV
COAT PROTEIN VP2
BUDGERIGAR FLEDGLING DISEASE VIRUS
141-213

PCOA2_POVBA
COAT PROTEIN VP2
POLYOMAVIRUS BK (STRAIN AS)
14-64
317-351

PCOA2_POVBK
COAT PROTEIN VP2
POLYOMAVIRUS BK
14-64
317-351

PCOA2_POVBO
COAT PROTEIN VP2
BOVINE POLYOMAVIRUS
35-76
153-216

PCOA2_POVHA
COAT PROTEIN VP2
HAMSTER POLYOMAVIRUS
7-48
174-208

PCOA2_POVIC
COAT PROTEIN VP2
POLYOMAVIRUS JC
14-64
233-267

PCOA2_POVLY
COAT PROTEIN VP2
LYMPHOTROPIC POLYOMAVIRUS
14-78
156-206

PCOA2_POVM3
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS (STRAIN 3)
5-72
137-185

PCOA2_POVMA
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
5-72
137-185

PCOA2_POVMC
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
5-72
137-185

PCOA2_POVMK
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
15-56
177-211

PCOA2_SV40
COAT PROTEIN VP2
SIMIAN VIRUS 40
14-62
228-262
318-352

PCOAT_ABMVW
COAT PROTEIN
ABUTILON MOSAIC VIRUS
180-214

(ISOLATE WEST INDIA

PCOAT_ACLSV
COAT PROTEIN
APPLE CHLOROTIC LEAF SPOT VIRUS
154-188

PCOAT_AEDEV
COAT PROTEIN VP1
AEDES DENSONUCLEOSIS VIRUS
243-284

PCOAT_AMCV
COAT PROTEIN
ARTICHOKE MOTTLED CRINKLE VIRUS
36-70
100-134

PCOAT_BLRV
COAT PROTEIN
BEAN LEAFROLL VIRUS
89-123

PCOAT_BMV
COAT PROTEIN
BROME MOSAIC VIRUS
36-73

PCOAT_BYDV1
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
163-197

PCOAT_BYDVM
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
163-197

PCOAT_BYDVP
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
164-198

PCOAT_BYDVR
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
164-198

PCOAT_CAMVC
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
56-90
186-223

PCOAT_CAMVD
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
53-91
187-224

PCOAT_CAMVE
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
56-90
186-223

PCOAT_CAMVN
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
56-90
185-222

PCOAT_CAMVS
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
53-91
187-224

PCOAT_CARMV
COAT PROTEIN
CARNATION MOTTLE VIRUS
13-51

PCOAT_CCMV
COAT PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
141-178

PCOAT_CERV
PROBABLE COAT PROTEIN
CARNATION ETCHED RING VIRUS
192-226

PCOAT_CHVP1
MAJOR CAPSID PROTEIN
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
393-435

PCOAT_CLVK
COAT PROTEIN
CASSAVA LATENT VIRUS
197-231

PCOAT_CLVN
COAT PROTEIN
CASSAVA LATENT VIRUS
197-231

PCOAT_CMVFC
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187

PCOAT_CMVI
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187

PCOAT_CMVP6
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187

PCOAT_CMVQ
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187

PCOAT_CMVWL
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187

PCOAT_CMVY
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187

PCOAT_CNV
COAT PROTEIN
CUCUMBER NECROSIS VIRUS
328-365

PCOAT_CSMV
COAT PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
184-218

PCOAT_CTV36
COAT PROTEIN
CITRUS TRISTEZA VIRUS
79-120

PCOAT_CYMV
COAT PROTEIN
CLOVER YELLOW MOSAIC VIRUS
162-204

PCOAT_EPMV
COAT PROTEIN
EGGPLANT MOSAIC VIRUS
40-74

PCOAT_FCVC6
COAT PROTEIN
FELINE CALICIVIRUS
432-466
566-600

PCOAT_FCVF4
COAT PROTEIN
FELINE CALICIVIRUS
502-550
566-600

PCOAT_FCVF9
COAT PROTEIN
FELINE CALICIVIRUS
519-553
569-603

PCOAT_FMVD
PROBABLE COAT PROTEIN
FIGWORT MOSAIC VIRUS
144-199
206-247
449-483

PCOAT_FXMV
COAT PROTEIN
FOXTAIL MOSAIC VIRUS
168-220

PCOAT_IRV1
CAPSID PROTEIN
TIPULA IRIDESCENT VIRUS
90-124

PCOAT_IRV22
CAPSID PROTEIN
SIMULIUM IRIDESCENT VIRUS
90-124

PCOAT_IRV6
CAPSID PROTEIN
CHILO IRIDESCENT VIRUS
51-85

PCOAT_LSV
COAT PROTEIN
LILY SYMPTOMLESS VIRUS
32-70
255-289

PCOAT_MSTV
COAT PROTEIN
MAIZE STRIPE VIRUS
7-76
84-121

PCOAT_MSVK
COAT PROTEIN
MAIZE STREAK VIRUS
187-221

PCOAT_MSVN
COAT PROTEIN
MAIZE STREAK VIRUS
187-221

PCOAT_MSVS
COAT PROTEIN
MAIZE STREAK VIRUS
187-221

PCOAT_ORSV
COAT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
105-139

PCOAT_PAVBO
COAT PROTEIN VP2
BOVINE PARVOVIRUS
380-414
444-480

PCOAT_PAVC7
COAT PROTEIN VP1
CANINE PARVOVIRUS
497-531

PCOAT_PEBV
COAT PROTEIN
PEA EARLY BROWNING VIRUS
73-114

PCOAT_POPMV
COAT PROTEIN
POPLAR MOSAIC VIRUS
36-81

PCOAT_PPMVS
COAT PROTEIN
PEPPER MILD MOTTLE VIRUS
104-138

PCOAT_PVSP
COAT PROTEIN
POTATO VIRUS
38-72
251-292

PCOAT_PYMVV
COAT PROTEIN
POTATO YELLOW MOSAIC VIRUS
190-224

PCOAT_RBDV
COAT PROTEIN
RASPBERRY BUSHY DWARF VIRUS
10-44
140-199

PCOAT_RCNMV
COAT PROTEIN
RED CLOVER NECROTIC MOSAIC VIRUS
272-306

PCOAT_RSV
COAT PROTEIN
RICE STRIPE VIRUS
34-68
83-120
259-309

PCOAT_SLCV
COAT PROTEIN
SQUASH LEAF CURL VIRUS
190-224

PCOAT_SMWLM
COAT PROTEIN
SATELLITE MAIZE WHITE LINE MOSAIC VIRUS
66-100

PCOAT_SOCMV
COAT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
128-166

PCOAT_STNV1
COAT PROTEIN
SATELLITE TOBACCO NECROSIS VIRUS 1
2-50

PCOAT_STNV2
COAT PROTEIN
SATELLITE TOBACCO NECROSIS VIRUS 2
38-72

PCOAT_TAMV
GENOME POLYPROTEIN
TAMARILLO MOSAIC VIRUS
7-55

PCOAT_TAV
COAT PROTEIN
TOMATO ASPERMY VIRUS
14-48

PCOAT_TBSVB
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS
1-37
43-77

PCOAT_TBSVC
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS
44-78
100-134

PCOAT_TCV
COAT PROTEIN
TURNIP CRINKLE VIRUS
12-46

PCOAT_TGMV
COAT PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
186-220

PCOAT_TMGMV
COAT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS
103-137

PCOAT_TMV
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137

PCOAT_TMV06
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137

PCOAT_TMVCO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
76-138

PCOAT_TMVDA
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137

PCOAT_TMVER
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137

PCOAT_TMVHR
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137

PCOAT_TMVO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137

PCOAT_TMVOM
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137

PCOAT_TMVTO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137

PCOAT_TRVCA
COAT PROTEIN
TOBACCO RATTLE VIRUS
71-109

PCOAT_TRVTC
COAT PROTEIN
TOBACCO RATTLE VIRUS
69-103

PCOAT_TYDVA
COAT PROTEIN
TOBACCO YELLOW DWARF VIRUS
2-36

PCOAT_TYMV
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS
41-75

PCOAT_TYMVA
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS
41-75

PCOAT_WCMVO
COAT PROTEIN
WHITE CLOVER MOSAIC VIRUS
163-197

PCORA_HPBGS
CORE ANTIGEN
GROUND SQUIRREL HEPATITIS VIRUS
94-135

PCORA_HPBV9
CORE ANTIGEN
HEPATITIS B VIRUS
111-149

PCORA_WHV1
CORE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 1
62-106

PCORA_WHV8
CORE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
62-106

PD250_ASFB7
PROTEIN D250R
AFRICAN SWINE FEVER VIRUS
198-232

PDNB2_ADE02
EARLY E2A DNA-BINDING PROTEIN
HUMAN ADENOVIRUS TYPE 2
291-336

PDNB2_ADE05
EARLY E2A DNA-BINDING PROTEIN
HUMAN ADENOVIRUS TYPE 5
291-336

PDNB1_EBV
MAJOR DNA-BINDING PROTEIN
EPSTEIN-BARR VIRUS
251-252
718-752
974-
1027-

1009
1068

PDNB1_HCMVA
MAJOR DNA-BINDING PROTEIN
HUMAN CYTOMEGALOVIRUS
338-372
1013-

1070

PDNB1_HSV11
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS
557-595
599-640
769-803
1079-

1140

PDNB1_HSV1F
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS
557-595
599-640
769-803
1079-

1140

PDNB1_HSV1K
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS
557-595
599-640
769-803
1079-

1140

PDNB1_HSVB2
MAJOR DNA-BINDING PROTEIN
BOVINE HERPESVIRUS TYPE 2
552-591
599-633
1048-

1131

PDNB1_HSVE1
MAJOR DNA-BINDING PROTEIN
EQUINE HERPESVIRUS TYPE 1
273-314

PDNB1_HSVEB
MAJOR DNA-BINDING PROTEIN
EQUINE HERPESVIRUS TYPE 1
617-658
1107-

1148

PDNB1_HSVSA
MAJOR DNA-BINDING PROTEIN
HERPESVIRUS SAIMIRI
222-259
330-367
506-557
873-907

PDNB1_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS
584-618
987-

1125

PDNB1_SCMVC
MAJOR DNA-BINDING PROTEIN
SIMIAN CYTOMEGALOVIRUS
525-562

PDNB1_VZVD
MAJOR DNA-BINDING PROTEIN
VARICELLA-ZOSTER VIRUS
613-650
1043-

1077

PDNL1_ASFM2
DNA LIGASE
AFRICAN SWINE FEVER VIRUS
72-106

PDNL1_VACCC
DNA LIGASE
VACCINIA VIRUS
395-436

PDNL1_VACCV
DNA LIGASE
VACCINIA VIRUS
395-436

PDNL1_VARV
DNA LIGASE
VARIOLA VIRUS
395-436

PDPOL_ADE02
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 2
667-743

PDPOL_ADE05
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 5
667-743

PDPOL_ADE07
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 7
733-809

PDPOL_ADE12
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 12
665-741

PDPOL_CBEPV
DNA POLYMERASE
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
23-64
202-240

PDPOL_CHVN2
DNA POLYMERASE
CHLORELLA VIRUS NY-2A
247-284

PDPOL_CHVP1
DNA POLYMERASE
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
247-284

PDPOL_FOWPV
DNA POLYMERASE
FOWLPOX VIRUS
17-51
80-114
371-412

PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
753-787
1033-

1074

PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39

PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (STRAIN CHINA)
5-39

PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39
297-338

(WHITE SHANGHAI DUCK ISOLATE S3

PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS VIRUS
291-325

PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
5-39
224-265
557-595

PDPOL_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE AYW)
201-235

PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADYW)
201-235

PDPOL_HSV11
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
511-559

PDPOL_HSV1A
DNA POLYMERASE
HERPES SIMPLEX VIRUS
511-559

(TYPE 1/STRAIN ANGELOTTI

PDPOL_HSV1K
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
511-559

PDPOL_HSV1S
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16)
511-559

PDPOL_HSV21
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 186)
512-560

PDPOL_HSVEB
DNA POLYMERASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
494-528

PDPOL_HSV11
DNA POLYMERASE
ICTALURID HERPESVIRUS 1
33-67
328-366
401-435
706-749
808-858

(CHANNEL CATFISH VIRUS)

PDPOL_NPVAC
DNA POLYMERASE
AUTOGRAPHA CALIFORNICA NUCLEAR
595-646

POLYHEDROSIS VIRUS

PDPOL_VACCC
DNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
627-683
770-818
828-862

PDPOL_VACCV
DNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
627-683
770-818
828-862

PDPOL_VARV
DNA POLYMERASE
VARIOLA VIRUS
626-682
769-817
827-861

PDPOL_VZVD
DNA POLYMERASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
473-533

PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 1
285-326

PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 59
290-331

PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
290-331

PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
289-330

PDPOL_WHV81
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
290-331

(INFECTIOUS CLONE)

PDPOM_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE AYW)
201-235

PDUT_HSVEB
DEOXYURIDINE 5′-TRIPHOSPHATE
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P
135-169

NUCLEOTIDOHY

PDUT_HSVSA
DEOXYURIDINE 5′-TRIPHOSPHATE
HERPESVIRUS SAIMIRI (STRAIN 11)
179-223

NUCLEOTIDOHY

PE1A_ADE41
EARLY E1A 27 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
107-141

PE1BL_ADE40
E1B PROTEIN, LARGE T-ANTIGEN
HUMAN ADENOVIRUS TYPE 40
102-166

PE1BS_ADE02
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 2
103-137

PE1BS_ADE05
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 5
103-137

PE1BS_ADE12
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 12
96-131

PE1BS_ADE40
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 40
100-134

PE1BS_ADE41
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 41
100-134

PE1BS_ADEM1
E1B PROTEIN, SMALL T-ANTIGEN
MOUSE ADENOVIRUS TYPE 1
199-173

PE314_ADE02
EARLY E3B 14 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
2-39

PE314_ADE03
EARLY E3 15.3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 3
8-49

PE314_ADE05
EARLY E3 14.5 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
2-39

PE314_ADE07
EARLY E3 15.3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
7-48

PE320_ADE35
EARLY E3 20.3 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 35
70-107

PE321_ADE35
EARLY E3 20.6 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 35
125-169

PE411_ADE02
PROBABLE EARLY E4 11 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
10-44

PE411_ADE05
PROBABLE EARLY E4 11 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
10-44

PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN B95-8)
123-157

PEBN4_EBV
EBNA-4 NUCLEAR PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
487-521

PEFT1_VARV
EARLY TRANSCRIPTION FACTOR
VARIOLA VIRUS
23-71
307-341

70 KD SUBUNIT

PENV1_FRSFV
ENV POLYPROTEIN PRECURSOR
FRIEND SPLEEN FOCUS-FORMING VIRUS
341-375

PENV2_FRSFV
ENV POLYPROTEIN PRECURSOR
FRIEND SPLEEN FOCUS-FORMING VIRUS
341-378

PENV_AVIRE
ENV POLYPROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
420-472

PENV_AVISN
ENV POLYPROTEIN
AVIAN SPLEEN NECROSIS VIRUS
426-478

PENV_BAEVM
ENV POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
390-456

PENV_BIV06
ENV POLYPROTEIN PRECURSOR
BOVINE IMMUNODEFICIENCY VIRUS
10-44
88-122
221-255
530-610
635-691

(ISOLATE 106)

PENV_BIV27
ENV POLYPROTEIN PRECURSOR
BOVINE IMMUNODEFICIENCY VIRUS
10-44
88-122
159-193
250-284
559-639
664-724

(ISOLATE 127)

PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379

(AMERICAN ISOLATE FLK)

PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379

(AUSTRALIAN ISOLATE)

PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379

(AMERICAN ISOLATE VDM)

PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379

(BELGIUM ISOLATE LB285)

PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379

BELGIUM ISOLATE LB59)

PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379

(JAPANESE ISOLATE BLV-1)

PENV_CAEVC
ENV POLYPROTEIN PRECURSOR
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
157-196
615-720
751-785
847-895

(STRAIN CORK)

PENV_CAEVG
ENV POLYPROTEIN PRECURSOR
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
154-193
613-718
749-783
845-893

(STRAIN G63)

PENV_EIAV1
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
668-716

(CLONE P3.2-1)

PENV_EIAV2
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-692

(CLONE P3.2-2)

PENV_EIAV3
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716

(CLONE P3.2-3)

PENV_EIAV5
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
38-76
437-526
560-594
659-693

(CLONE P3.2-5)

PENV_EIAV9
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716

(CLONE 1369)

PENV_EIAVC
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716

(CLONE CL22)

PENV_EIAVW
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716

(STRAIN WSU5)

PENV_EIAVY
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716

(ISOLATE WYOMING)

PENV_FENV1
ENV POLYPROTEIN PRECURSOR
FELINE ENDOGENOUS VIRUS ECE1
503-555
567-604

PENV_FIVPE
ENVELOPE POLYPROTEIN PRECURSOR
FELINE IMMUNODEFICIENCY VIRUS
610-690
715-756

(ISOLATE PETALUMA)

PENV_FIVSD
ENVELOPE POLYPROTEIN PRECURSOR
FELINE IMMUNODEFICIENCY VIRUS
601-688
713-754

(ISOLATE SAN DIEGO)

PENV_FIVT2
ENVELOPE POLYPROTEIN PRECURSOR
FELINE IMMUNODEFICIENCY VIRUS
60-122
609-689
714-755

(ISOLATE TM2)

PENV_FLVC6
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA PROVIRUS (CLONE CFE-6)
497-549
561-595

PENV_FLVGL
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS
478-530
542-576

(STRAIN A/GLASGOW-1)

PENV_FLVLB
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS
498-550
562-596

(STRAIN LAMBDA-B1)

PENV_FLVSA
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS (STRAIN SARMA)
475-527
539-573

PENV_FOAMV
ENV POLYPROTEIN
HUMAN SPUMARETROVIRUS
1-41
154-205
321-355
563-693
866-903

PENV_FSVGA
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS
498-550
562-596

(STRAIN GARDNER-ARNSTEIN)

PENV_FSVGB
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS
478-530
542-576

(STRAIN GA)

PENV_FSVSM
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS
481-524
545-579

(STRAIN SM)

PENV_FSVST
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS
498-532

(STRAIN SNYDER-THEILEN)

PENV_GALV
ENV POLYPROTEIN PRECURSOR
GIBBON APE LEUKEMIA VIRUS
523-575
587-621

PENV_HTL1A
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
321-383

(STRAIN ATK)

PENV_HTL1C
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
316-383

(CARIBBEAN ISOLATE)

PENV_HTL1M
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
321-383

(ISOLATE MT-2)

PENV_HTLV2
ENV POLYPROTEIN PRECURSOR
HUMAN T-CELL LEUKEMIA VIRUS TYPE II
317-377

PENV_HV1A2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
497-593
612-711
766-845

PRECURSOR
(ARV2/SF2 ISOLATE

PENV_HV1B1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-594
610-712
767-843

PRECURSOR
(BH10 ISOLATE)

PENV_HV1B8
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-589
605-707
762-838

PRECURSOR
(BH8 ISOLATE)

PENV_HV1BN
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-365
501-590
609-708
763-831

PRECURSOR (CONT
(BRAIN ISOLATE)

PENV_HV1BR
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
510-599
615-717
772-841

PRECURSOR
(BRU ISOLATE)

PENV_HV1C4
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
342-376
510-606
626-724
779-855

PRECURSOR
(CDC-451 ISOLATE)

PENV_HV1EL
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
255-296
502-591
607-709
768-829

PRECURSOR
(ELI ISOLATE)

PENV_HV1H2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-594
610-712
767-836

PRECURSOR
(HXB2 ISOLATE)

PENV_HV1H3
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-594
610-712
767-843

PRECURSOR
(HXB3 ISOLATE)

PENV_HV1J3
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-377
517-605
622-723
778-843

PRECURSOR
(JH3 ISOLATE)

PENV_HV1JR
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
329-363
497-586
603-704
759-835

PRECURSOR
(JRCSF ISOLATE)

PENV_HV1KB
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
88-122
338-372
511-545
555-599
618-677
681-718
772-848

PRECURSOR
(STRAIN KB-1-GP32)

PENV_HV1MA
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
259-300
507-596
617-714
770-825

PRECURSOR
(MAL ISOLATE)

PENV_HV1MF
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
503-592
622-710
765-841

PRECURSOR
(MFA ISOLATE)

PENV_HV1MN
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
336-370
506-595
617-713
774-841

PRECURSOR
(MN ISOLATE)

PENV_HV1N5
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
326-360

PRECURSOR
(NEW YORK-5 ISOL

PENV_HV1ND
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
249-290
495-584
601-702
757-825

PRECURSOR
(NDK ISOLATE)

PENV_HV1OY
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
336-370
497-593
610-711
766-842

PRECURSOR
(OY1 ISOLATE)

PENV_HV1PV
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-594
610-712
767-843

PRECURSOR
(PV22 ISOLATE)

PENV_HV1RH
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
344-378
507-603
619-721
776-852

PRECURSOR
(RF/HAT ISOLATE)

PENV_HV1S1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
496-585
602-703
758-830

PRECURSOR
(SF162 ISOLATE)

PENV_HV1S3
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
332-366
494-590
607-708
763-837

PRECURSOR
(SF33 ISOLATE)

PENV_HV1SC
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-365
498-584
611-712
767-834

PRECURSOR
(SC ISOLATE)

PENV_HV1W1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-365
498-594
611-712
767-836

PRECURSOR
(WMJ1 ISOLATE)

PENV_HV1W2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
327-361
489-594
602-703
758-827

PRECURSOR
(WMJ2 ISOLATE)

PENV_HV1Z2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
255-296
502-591
610-709
764-831

PRECURSOR
(Z2/CDC-Z34 ISOLAT

PENV_HV1Z3
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
251-292

PRECURSOR
(ZAIRE 3 ISOLATE)

PENV_HV1Z6
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
256-297
504-593
609-711
766-840

PRECURSOR
(ZAIRE 6 ISOLATE)

PENV_HV1Z8
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
266-307
512-601
617-675
682-719
774-831

PRECURSOR
(Z-84 ISOLATE)

PENV_HV1ZH
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
522-594
612-671
675-712
777-839

PRECURSOR
(ZAIRE HZ321 ISOLA

PENV_HV2BE
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
447-481
510-595
617-680

PRECURSOR
(ISOLATE BEN)

PENV_HV2CA
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
512-597
619-709

PRECURSOR
(ISOLATE CAM2)

PENV_HV2D1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
501-586
608-698

PRECURSOR
(ISOLATE D194)

PENV_HV2G1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
439-473
502-587
609-699

PRECURSOR
(ISOLATE GHANA-1)

PENV_HV2NZ
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
488-587
609-699

PRECURSOR
(ISOLATE NIH-Z)

PENV_HV2RO
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
511-596
618-708

PRECURSOR
(ISOLATE ROD)

PENV_HV2S2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
442-476
505-590
612-702

PRECURSOR
(ISOLATE ST/24.1C#

PENV_HV2SB
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
526-588
614-700

PRECURSOR
(ISOLATE SBLISY)

PENV_HV2ST
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
442-476
505-590
612-702

PRECURSOR
(ISOLATE ST)

PENV_IPMAE
ENV POLYPROTEIN PRECURSOR
MOUSE INTRACISTERNAL A-PARTICLE
367-422
465-527

PENV_JSRV
ENV POLYPROTEIN PRECURSOR
SHEEP PULMONARY ADENOMATOSIS VIRUS
403-455
571-605

PENV_MCFF
ENV POLYPROTEIN PRECURSOR
MINK CELL FOCUS-FORMING MURINE
473-525
537-571

LEUKEMIA VIRUS

PENV_MCFF3
ENV POLYPROTEIN PRECURSOR
MINK CELL FOCUS-FORMING MURINE
474-526
538-572

(COAT POLYPROTE
LEUKEMIA VIRUS (ISOLA

PENV_MLVAV
ENV POLYPROTEIN PRECURSOR
AKV MURINE LEUKEMIA VIRUS
503-555
567-601

PENV_MLVCB
ENV POLYPROTEIN PRECURSOR
CAS-BR-E MURINE LEUKEMIA VIRUS
498-550
562-596

PENV_MLVF5
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57)
520-564
576-610

PENV_MLVFF
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS
520-564
576-610

(ISOLATE FB29)

PENV_MLVFP
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS
520-564
576-610

(ISOLATE PVC-211)

PENV_MLVHO
ENV POLYPROTEIN PRECURSOR
HOMULV MURINE LEUKEMIA VIRUS
504-551
563-597

PENV_MLVKI
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA VIRUS
40-92
104-138

PENV_MLVMO
ENV POLYPROTEIN PRECURSOR
MOLONEY MURINE LEUKEMIA VIRUS
502-554
566-600

PENV_MLVRD
ENV POLYPROTEIN PRECURSOR
RADIATION MURINE LEUKEMIA VIRUS
497-549
561-595

PENV_MLVRK
ENV POLYPROTEIN PRECURSOR
RADIATION MURINE LEUKEMIA VIRUS
497-549
561-595

(STRAIN KAPLAN)

PENV_MMTVB
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
477-539
556-612

PENV_MMTVG
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
477-539
556-612

PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
408-474

PENV_MSVFB
ENV POLYPROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
43-95
107-141

PENV_OMVVS
ENV POLYPROTEIN PRECURSOR
OVINE LENTIVIRUS (STRAIN SA-OMVV)
22-64
185-223
664-746
780-816

PENV_RMCFV
ENV POLYPROTEIN PRECURSOR
RAUSCHER MINK CELL FOCUS-INDUCING VIRUS
484-528
540-574

PENV_RSFFV
ENV POLYPROTEIN PRECURSOR
RAUSCHER SPLEEN FOCUS-FORMING VIRUS
342-376

PENV_SFV1
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
1-41
101-140
154-205
321-355
563-651
658-693
866-904

PENV_SFV3L
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/
5-46
158-209
319-357
560-706
863-901

STRAIN LK3)

PENV_SIVA1
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
269-310
551-623
643-693

PRECURSOR
(AGM155 ISOLATE)

PENV_SIVAG
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
556-628
651-699
808-852

PRECURSOR
(AGM3 ISOLATE)

PENV_SIVAI
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
257-291
336-370
535-607
627-684
792-840

PRECURSOR
(ISOLATE AGM/CLONE GR1

PENV_SIVAT
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
264-298
549-621
644-692
796-833

PRECURSOR
(TYO-1 ISOLATE)

PENV_SIVCZ
ENVELOPE POLYPROTEIN GP160
CHIMPANZEE IMMUNODEFICIENCY VIRUS
253-291
330-365
512-584
669-703
803-837

PRECURSOR
(SIV(CPZ))

PENV_SIVGB
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
566-654
677-725

PRECURSOR
(ISOLATE GB1)

PENV_SIVM1
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
114-151
465-506
528-613
635-725
809-864

PRECURSOR
(MM142-83 ISOLATE)

PENV_SIVM2
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
71-109
161-219
245-286

PRECURSOR
(MM251 ISOLATE)

PENV_SIVMK
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
464-505
540-612
638-724

PRECURSOR
(K6W ISOLATE)

PENV_SIVML
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
464-505
540-612
638-724

PRECURSOR
(K78 ISOLATE)

PENV_SIVS4
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
466-509
517-616
638-728
812-853

PRECURSOR
(F236/SMH4 ISOLATE)

PENV_SIVSP
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
470-513
521-620
642-732
811-848

PRECURSOR
(PBJ/BC13 ISOLATE)

PENV_SMRVH
ENV POLYPROTEIN PRECURSOR
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
400-466

PENV_SRV1
ENV POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
409-475

PENV_VILV
ENV POLYPROTEIN PRECURSOR
VISNA LENTIVIRUS (STRAIN 1514)
21-62
184-222
637-740
773-809

PENV_VILV1
ENV POLYPROTEIN PRECURSOR
VISNA LENTIVIRUS
21-62
184-222
643-746
780-816

(STRAIN 1514/CLONE LV1-1KS1)

PENV_VILV2
ENV POLYPROTEIN PRECURSOR
VISNA LENTIVIRUS
21-62
184-222
645-748
782-818

(STRAIN 1514/CLONE LV1-1KS2)

PERBA_AVIER
ERBA ONCOGENE PROTEIN
AVIAN ERYTHROBLASTOSIS VIRUS
106-140

(STRAIN ES4)

PETF1_FOWP1
EARLY TRANSCRIPTION FACTOR
FOWLPOX VIRUS (STRAIN FP-1)
190-224
553-587

70 KD SUBUNIT

PETF1_SFVKA
EARLY TRANSCRIPTION FACTOR
SHOPE FIBROMA VIRUS (STRAIN KASZA)
37-71
267-340
550-587

70 KD SUBUNIT

PETF1_VACCC
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
23-71
307-341

70 KD SUBUNIT

PETF1_VACCV
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN WR)
23-71
307-341

70 KD SUBUNIT

PETF2_VACCC
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
52-97
174-208

82 KD SUBUNIT

PETF2_VARV
EARLY TRANSCRIPTION FACTOR
VARIOLA VIRUS
52-97
174-208

82 KD SUBUNIT

PEXON_HCMVA
ALKALINE EXONUCLEASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
80-114

PEXON_HSVEB
ALKALINE EXONUCLEASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
89-141

PEXON_PRVNJ
ALKALINE EXONUCLEASE
PSEUDORABIES VIRUS (STRAIN NIA-3)
82-120

PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
109-157
342-383

PFIB2_ADE40
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
182-237

PFIB2_ADE41
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
182-223

PFIBP_ADE03
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 3
156-194

PFIBP_ADE07
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 7
176-210

PFIBP_ADE40
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
303-352

PFIBP_ADE41
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
320-366

PFIBP_ADEB3
FIBER PROTEIN
BOVINE ADENOVIRUS TYPE 3
181-215
585-626

PFOSX_MSVFR
V-FOS/FOX TRANSFORMING PROTEIN
FBR MURINE OSTEOSARCOMA VIRUS
131-169

PFOS_AVINK
P55-V-FOS TRANSFORMING PROTEIN
AVIAN RETROVIRUS NK24
109-152

PFOS_MSVFB
P55-V-FOS TRANSFORMING PROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
155-193

PGAGC_AVISC
P47(GAG-CRK) PROTEIN
AVIAN SARCOMA VIRUS (STRAIN CT10)
57-101

PGAG_AVEV1
GAG POLYPROTEIN
AVIAN ENDOGENOUS VIRUS EV-1
57-94

PGAG_AVEV2
GAG POLYPROTEIN
AVIAN ENDOGENOUS ROUS-ASSOCIATED
6-43

VIRUS-0

PGAG_AVIMC
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
57-94

PGAG_AVIMD
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HB1
57-94

PGAG_AVISU
CORE PROTEIN P19
AVIAN SARCOMA VIRUS (STRAIN UR2)
57-94

PGAG_AVISY
GAG POLYPROTEIN
AVIAN SARCOMA VIRUS (STRAIN Y73)
57-94

PGAG_BIV06
GAG POLYPROTEIN (P53)
BOVINE IMMUNODEFICIENCY VIRUS
1-41

(ISOLATE 106)

PGAG_EIAVY
GAG POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
61-118

(CLONE CL22)

PGAG_FIVPE
GAG POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
76-110

(ISOLATE PETALUMA)

PGAG_FIVSD
GAG POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
76-110

(ISOLATE SAN DIEGO)

PGAG_FIVT2
GAG POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
76-110

(ISOLATE TM2)

PGAG_FLV
GAG POLYPROTEIN
FELINE LEUKEMIA VIRUS
496-537

PGAG_FOAMV
GAG POLYPROTEIN
HUMAN SPUMARETROVIRUS
130-186
391-425
439-480
607-655

PGAG_FSVMD
GAG POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN MCDONOUGH)
499-534

PGAG_FUJSV
GAG POLYPROTEIN
FUJINAMI SARCOMA VIRUS
57-94

PGAG_GALV
GAG POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
393-444

PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
87-133
294-328

(ARV2/SF2 ISOLATE

PGAG_HV1B1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-131
292-326

(BH10 ISOLATE)

PGAG_HV1B5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-131
292-326

(BH5 ISOLATE)

PGAG_HV1BR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-131
292-326

(BRU ISOLATE)

PGAG_HV1C4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-131
292-326

(CDC-451 ISOLATE)

PGAG_HV1EL
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
93-131
292-326

(ELI ISOLATE)

PGAG_HV1H2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-131
292-326

(HXB2 ISOLATE)

PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
87-131
292-326

(JH3 ISOLATE)

PGAG_HV1JR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
87-131
292-326

(JRCSF ISOLATE)

PGAG_HV1MA
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-137

(MAL ISOLATE)

PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
87-134
295-329

(MN ISOLATE)

PGAG_HV1N5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-131
292-326

(NEW YORK-5 ISOL

PGAG_HV1ND
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
87-128
289-323

(NDK ISOLATE)

PGAG_HV1OY
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-131
292-326

(OYI ISOLATE)

PGAG_HV1PV
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-131
292-326

(PV22 ISOLATE)

PGAG_HV1RH
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
90-131
292-326

(RF/HAT ISOLATE)

PGAG_HV1U4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
87-127

(STRAIN UGANDAN

PGAG_HV1W2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
292-326

(WMJ2 ISOLATE)

PGAG_HV1Z2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
87-132
293-327

(Z2/CDC-Z34 ISOLAT

PGAG_HV2SB
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
292-326
293-327

(ISOLATE SBLISY)

PGAG_IPHA
RETROVIRUS-RELATED GAG POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
93-127
320-357

PGAG_IPMA
RETROVIRUS-RELATED GAG POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
67-103

PGAG_IPMAE
RETROVIRUS-RELATED GAG POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
89-133
138-172

PGAG_JSRV
GAG POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
470-504

PGAG_MMTVB
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
83-151
156-190

PGAG_MMTVG
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
83-151
156-190

PGAG_MPMV
GAG POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
222-260

PGAG_RSVP
GAG POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
57-94

PGAG_SCVLA
MAJOR COAT PROTEIN
SACCHAROMYCES CEREVISIAE VIRUS L-A
102-139
490-531

(SCV-L-A)

PGAG_SFV1
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
128-177
378-416
583-634

PGAG_SFV3L
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/
373-407
435-522
591-632

STRAIN LK3)

PGAG_SIVA1
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
302-336

(AGM155 ISOLATE)

PGAG_SIVAG
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
306-340

(AGM3 ISOLATE)

PGAG_SIVAI
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
183-217
473-507

(ISOLATE AGM/CLONE GR1

PGAG_SIVAT
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
302-336

(TYO-1 ISOLATE)

PGAG_SIVCZ
GAG POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
301-335

(SIV(CPZ))

PGAG_SIVGB
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
163-204
223-267
283-317

(ISOLATE GB1)

PGAG_SMSAV
GAG POLYPROTEIN
SIMIAN SARCOMA VIRUS
394-431

PHELI_HSV11
PROBABLE HELICASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
172-206
769-820

PHELI_HSV2H
PROBABLE HELICASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
468-502
670-721

PHELI_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI (STRAIN 11)
158-203
413-449
599-633

PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
445-517
782-821

PHEMA_CVBF
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
208-242

PHEMA_CVBLY
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
208-242

PHEMA_CVBM
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
208-242

PHEMA_CVBQ
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC),
208-242

PHEMA_CVHOC
HEMAGGLUTININ-ESTERASE PRECURSOR
HUMAN CORONAVIRUS (STRAIN OC43)
208-242

PHEMA_IAAIC
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/AICHI/2/68)
380-456

PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79)
364-440

PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454

(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)

PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454

(STRAIN A/CHICKEN/ALABAMA/1/75)

PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
108-142
375-475
494-528

(STRAIN A/CHICKEN/GERMANY/N/49)

PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
360-452
487-532

(STRAIN A/CHICKEN/PENNSYLVANIA/1/83)

PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
360-452
487-532

(STRAIN A/CHICKEN/PENNSYLVANIA/1370/

PHEMA_IACKS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-469
504-549

(STRAIN A/CHICKEN/SCOTLAND/59)

PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
377-469

(STRAIN A/CHICKEN/VICTORIA/1/85)

PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454

(STRAIN A/DUCK/ALBERTA/28/76)

PHEMA_IADA2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-476
495-547

(STRAIN A/DUCK/ALBERTA/60/76)

PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-453

(STRAIN A/DUCK/ALBERTA/78/76)

PHEMA_IADA4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-478
506-548

(STRAIN A/DUCK/ALBERTA/35/76)

PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454

(STRAIN A/DUCK/CZECHOSLOVAKIA/56)

PHEMA_IADE1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55
377-472

(STRAIN A/DUCK/ENGLAND/1/56)

PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/DUCK/HOKKAIDO/5/77)

PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/DUCK/HOKKAIDO/8/80)

PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/DUCK/HOKKAIDO/33/80)

PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/DUCK/HOKKAIDO/7/82)

PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/DUCK/HOKKAIDO/21/82)

PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/DUCK/HOKKAIDO/9/85)

PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/DUCK/HOKKAIDO/10/85)

PHEMA_IADIR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-471
506-551

(STRAIN A/DUCK/IRELAND/113/83)

PHEMA_IADM1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55

(STRAIN A/DUCK/MEMPHIS/546/76)

PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456

(STRAIN A/DUCK/MEMPHIS/928/74)

PHEMA_IADNY
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55

(STRAIN A/DUCK/NEW YORK/12/78)

PHEMA_IADNZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454

(STRAIN A/DUCK/NEW ZEALAND/31/76)

PHEMA_IADU1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55

(STRAIN A/DUCK/UKRAINE/1/60)

PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456

(STRAIN A/DUCK/UKRAINE/1/63)

PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456

(STRAIN A/ENGLAND/321/77

PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-477

(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK

PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454

(STRAIN A/GREY TEAL/AUSTRALIA/2/79)

PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-473

(STRAIN A/GULL/MARYLAND/704/77)

PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-476

(STRAIN A/GULL/ASTRAKHAN/227/84)

PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/ALGIERS/72)

PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537

(STRAIN A/EQUINE/CAMBRIDGE/1/63)

PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537

(STRAIN A/EQUINE/CAMBRIDGE/1/73)

PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
360-484
503-537

(STRAIN A/EQUINE/C.DETROIT/1/64)

PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
360-484
503-537

(STRAIN A/EQUINE/DETROIT/1/64)

PHEMA_IAHFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/FONTAINEBLEAU/76)

PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/KENTUCKY/2/86)

PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/KENTUCKY/1/87)

PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537

(STRAIN A/EQUINE/LEXINGTON/1/66)

PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537

(STRAIN A/EQUINE/LONDON/1416/73)

PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/MIAMI/1/63

PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/NEW MARKET/76)

PHEMA_IAHNN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537

(STRAIN A/EQUINE/NEW MARKET/1/77)

PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537

(STRAIN A/EQUINE/PRAGUE/1/56)

PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/ROMANIA/80)

PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/SANTIAGO/1/85)

PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537

(STRAIN A/EQUINE/SAO PAULO/1/76)

PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537

(STRAIN A/EQUINE/SWITZERLAND/137/72)

PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/TENNESSEE/5/86)

PHEMA_IAHTO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/TOKYO/71)

PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455

(STRAIN A/EQUINE/URUGUAY/1/63)

PHEMA_IAJAP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
375-467
502-547

(STRAIN A/JAPAN/305/57

PHEMA_IAKIE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
376-478
506-541

(STRAIN A/KIEV/59/79)

PHEMA_IALEN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
376-478
506-548

(STRAIN A/LENINGRAD/54/1)

PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-453

(STRAIN A/MALLARD/ASTRAKHAN/244/82)

PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
382-458

(STRAIN A/MALLARD/ASTRAKHAN/263/82)

PHEMA_IAMAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456

(STRAIN A/MALLARD/NEW YORK/6874/78)

PHEMA_IAME1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456

(STRAIN A/MEMPHIS/1/71)

PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456

(STRAIN A/MEMPHIS/102/72)

PHEMA_IAME6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/MEMPHIS/6/86)

PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
108-142
375-475

(STRAIN A/MINKS/SWEDEN/84)

PHEMA_IANT6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456

(STRAIN A/NT/60/68)

PHEMA_IAPIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-477
496-534

(STRAIN A/PILOT WHALE/MAINE/328/84)

PHEMA_IAPUE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
376-478
506-548

(STRAIN A/PUERTO RICO/8/34)

PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454

(STRAIN A/RUDDY TURNSTONE/NEW JERSE

PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454

(STRAIN A/SEAL/MASSACHUSETTS/133/82)

PHEMA_IASH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-474
506-552

(STRAIN A/SHEARWATER/AUSTRALIA/72)

PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
377-469

(STRAIN A/STARLING/VICTORIA/5156/85)

PHEMA_IATKI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-471
506-551

(STRAIN A/TURKEY/IRELAND/1378/83)

PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454

(STRAIN A/TURKEY/MINNESOTA/833/80

PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
392-470
504-548

(STRAIN A/TURKEY/ONTARIO/7732/66)

PHEMA_IATKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454
493-540

(STRAIN A/TURKEY/ONTARIO/6118/68)

PHEMA_IATKR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
30-64
374-474

(STRAIN A/TURKEY/OREGON/71)

PHEMA_IATKW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
373-472
487-539

(STRAIN A/TURKEY/WISCONSIN/1/66)

PHEMA_IATRA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55

(STRAIN A/TERN/AUSTRALIA/G70C/75)

PHEMA_IAUDO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
387-456

(STRAIN A/UDORN/307/72)

PHEMA_IAUSS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
376-478
506-548

(STRAIN A/USSR/90/77

PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
381-457

(STRAIN A/VICTORIA/3/75)

PHEMA_IAWIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
375-477
505-547

(STRAIN A/WILSON-SMITH/33)

PHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456

(STRAIN A/SWINE/COLORADO/1/77)

PHEMA_IAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/SWINE/HONG KONG/81/78)

PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440

(STRAIN A/SWINE/HONG KONG/126/82)

PHEMA_IAZIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-478
506-548

(STRAIN A/SWINE/INDIANA/1726/88)

PHEMA_IAZNJ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-478
506-547

(STRAIN A/SWINE/NEW JERSEY/11/76)

PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456

(STRAIN A/SWINE/UKKEL/1/84

PHEMA_INBBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
388-473

(STRAIN B/BEIJING/1/87

PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
378-463

(STRAIN B/BONN/43)

PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
386-471

(STRAIN B/ENGLAND/222/82)

PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
381-463

(STRAIN B/HONG KONG/8/73)

PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
387-472

(STRAIN B/LEE/40)

PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
377-462

(STRAIN B/MARYLAND/59)

PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
381-468

(STRAIN B/MEMPHIS/6/86)

PHEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
386-471

(STRAIN B/OREGON/5/80)

PHEMA_INBSI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
386-471

(STRAIN B/SINGAPORE/222/79)

PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
379-464

(STRAIN B/USSR/100/83)

PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
381-466

(STRAIN B/VICTORIA/3/85)

PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
388-473

(STRAIN B/VICTORIA/2/87)

PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-571

(STRAIN C/CALIFORNIA/78)

PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559

(STRAIN C/ENGLAND/892/83)

PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559

(STRAIN C/GREAT LAKES/1167/54)

PHEMA_INCHY
HEMAGGLUTININ
INFLUENZA C VIRUS
470-558

(STRAIN C/HYOGO/1/83)

PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
484-572

(STRAIN C/JOHANNESBURG/1/66)

PHEMA_INCKY
HEMAGGLUTININ
INFLUENZA C VIRUS
470-558

(STRAIN C/KYOTO/41/82)

PHEMA_INCMI
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
470-558

(STRAIN C/MISSISSIPPI/80)

PHEMA_INCNA
HEMAGGLUTININ
INFLUENZA C VIRUS
470-558

(STRAIN C/NARA/82)

PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559

(STRAIN C/PIG/BEIJING/10/81)

PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559

(STRAIN C/PIG/BEIJING/115/81)

PHEMA_INCP3
MEASLES VIRUS (STRAIN HALLE)
INFLUENZA C VIRUS
471-559

(STRAIN C/PIG/BEIJING/439/82)

PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559

(STRAIN C/TAYLOR/1233/47

PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559

(STRAIN C/YAMAGATA/10/81)

PHEMA_MEASE
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN EDMONSTON)
46-90

PHEMA_MEASH
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN HALLE)
46-90

PHEMA_MEASI
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN IP-3-CA)
46-87

PHEMA_MEASY
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN YAMAGATA-1)
46-87

PHEMA_MUMP1
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN SBL-1
34-99

PHEMA_MUMPM
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
34-99

PHEMA_MUMPR
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN RW)
34-99

PHEMA_MUMPS
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN SBL)
34-99

PHEMA_NDVA
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
8-52
477-529

(STRAIN AUSTRALIA-VICTORIA/32)

PHEMA_NDVB
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
1-49

(STRAIN BEAUDETTE C/45)

PHEMA_NDVD
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
1-52

(STRAIN D26/76)

PHEMA_NDVM
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
1-52

(STRAIN MIYADERA/51)

PHEMA_NDVQ
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
1-52

(STRAIN QUEENSLAND/66)

PHEMA_NDVTG
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
1-49

(STRAIN TEXAS G.B./48)

PHEMA_NDVU
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
1-52

(STRAIN ULSTER/67)

PHEMA_PHODV
HEMAGGLUTININ-NEURAMINIDASE
PHOCINE DISTEMPER VIRUS
39-73

PHEMA_PI1HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 1 VIRUS
66-110

(STRAIN WASHINGTON/1957)

PHEMA_PI2H
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 2 VIRUS
247-281

PHEMA_PI2HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 2 VIRUS
247-281

(STRAIN TOSHIBA)

PHEMA_PI3B
HEMAGGLUTININ-NEURAMINIDASE
BOVINE PARAINFLUENZA 3 VIRUS
38-93

PHEMA_PI3H4
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
13-110
394-428

(STRAIN NIH 47885)

PHEMA_PI3HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
20-110
394-428

(STRAIN AUS/124854/74)

PHEMA_PI3HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
13-110
394-428

(STRAIN TEX/545/80)

PHEMA_PI3HU
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
13-110
394-428

(STRAIN TEX/9305/82)

PHEMA_PI3HV
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
13-110
394-428

(STRAIN TEX/12677/83)

PHEMA_PI3HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
13-110
394-428

(STRAIN WASH/641/79)

PHEMA_PI3HX
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
13-110
394-428

(STRAIN WASH/1511/73)

PHEMA_PI4HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 4A VIRUS
54-88

(STRAIN TOSHIBA)

PHEMA_RACVI
HEMAGGLUTININ PRECURSOR
RACCOON POXVIRUS
166-214
256-290

PHEMA_RINDK
HEMAGGLUTININ-NEURAMINIDASE
RINDERPEST VIRUS (STRAIN KABETE O)
46-87

PHEMA_RINDL
HEMAGGLUTININ-NEURAMINIDASE
RINDERPEST VIRUS (STRAIN L)
46-87
191-225

PHEMA_SEND5
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
57-110

PHEMA_SENDF
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN FUSHIMI)
57-110

PHEMA_SENDH
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN HARRIS)
57-110

PHEMA_SENDJ
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN HVJ)
57-110

PHEMA_SENDZ
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z)
57-110

PHEMA_SV41
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 41
18-52
387-421

PHEMA_SV5
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 5 (STRAIN W3)
27-82

PHEMA_SV5LN
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 5 (ISOLATE HUMAN/LN)
27-82

PHEMA_VARV
HEMAGGLUTININ PRECURSOR
VARIOLA VIRUS
177-211

PHEX3_ADE02
PERIPENTONAL HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 2
90-134

PROTEIN

PHEX3_ADE05
PERIPENTONAL HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 5
90-134

PROTEIN

PHEX9_ADE02
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 2
85-134

PHEX9_ADE05
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 5
85-134

PHEX9_ADE07
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 7,
93-138

AND HUMAN ADENOVIRUS TYPE

PHEX9_ADE12
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 12
88-137

PHEX9_ADE41
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 41
67-126

PHEX9_ADEC2
HEXON-ASSOCIATED PROTEIN
CANINE ADENOVIRUS TYPE 2
53-103

PHEX9_ADENT
HEXON-ASSOCIATED PROTEIN
TUPAIA ADENOVIRUS
61-109

PHEX_ADE02
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 2
341-386
433-467
583-624

PHEX_ADE05
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 5
330-379

PHEX_ADE40
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 40
303-352
408-449
553-587

PHEX_ADE41
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 41
306-355
555-589

PHEX_ADEB3
HEXON PROTEIN
BOVINE ADENOVIRUS TYPE 3
301-346
385-419
544-578
705-739

PHRG_COWPX
HOST RANGE PROTEIN
COWPOX VIRUS
320-395
455-489

PI226_ASFB7
LATE PROTEIN 1226R
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
110-151

PIBMP_CAMV4
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D4)
3-44
378-419

PIBMP_CAMVB
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BARI 1)
379-420

PIBMP_CAMVC
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
3-37
378-419

PIBMP_CAMVD
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
3-44
378-419

PIBMP_CAMVE
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
3-37
378-419

PIBMP_CAMVJ
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS
3-37
378-419

(STRAIN S-JAPAN)

PIBMP_CAMVN
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
3-37
378-419

PIBMP_CAMVP
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
3-37
374-419

PIBMP_CAMVS
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS
3-37
378-419

(STRAIN STRASBOURG)

PIBMP_CERV
INCLUSION BODY MATRIX PROTEIN
CARNATION ETCHED RING VIRUS
3-37

PIBMP_FMVD
INCLUSION BODY MATRIX PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
1-51
372-406

PIBMP_SOCMV
INCLUSION BODY MATRIX PROTEIN

1-48
132-179

PIC18_HCMVA
PROBABLE PROCESSING AND TRANSPORT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
53-98
290-324
498-532

PROTEIN

PIC18_HSV11
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
331-365

PIC18_HSV1A
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/
331-365

STRAIN ANGELOTTI)

PIC18_HSV1F
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
324-362

PIC18_HSVB2
PROBABLE PROCESSING AND TRANSPORT
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
466-500

PROTEIN

PIC18_HSVEB
PROBABLE PROCESSING AND TRANSPORT
HERPESVIRUS TYPE 1 (ISOLATE HVS25A)
341-375

PROTEIN

PIC18_HSVSA
PROBABLE PROCESSING AND TRANSPORT
HERPESVIRUS SAIMIRI (STRAIN 11)
58-99
361-395

PROTEIN

PIC18_MCMVS
PROBABLE PROCESSING AND TRANSPORT
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
60-112
290-340
647-691

PROTEIN

PIC18_PRVIF
PROBABLE PROCESSING AND TRANSPORT
PSEUDORABIES VIRUS
299-333
303-337

PROTEIN
(STRAIN INDIANA-FUNKHAUSER/BECKE

PICP0_HSVBJ
TRANS-ACTING TRANSCRIPTIONAL
BOVINE HERPESVIRUS TYPE 1 (STRAIN JURA)
190-224

PROTEIN ICP0

PICP0_HSVBK
TRANS-ACTING TRANSCRIPTIONAL
BOVINE HERPESVIRUS TYPE 1 (STRAIN K22)
190-224

PROTEIN ICP0

PICP4_HSVMG
TRANS-ACTING TRANSCRIPTIONAL
MAREK'S DISEASE HERPESVIRUS (STRAIN GA)
1022-

ACTIVATOR PR

1056

PICP4_VZVD
TRANS-ACTING TRANSCRIPTIONAL
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
920-954

PROTEIN ICP4

PIE63_HCMVA
TRANSCRIPTIONAL REGULATOR IE63
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
207-241

HOMOLOG

PIE63_HSV11
TRANSCRIPTIONAL REGULATOR IE63
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
241-275

PIE63_HSVEB
TRANSCRIPTIONAL REGULATOR IE63
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
282-316

HOMOLOG

PIE63_VZVD
TRANSCRIPTIONAL REGULATOR IE63
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
195-229
258-306

HOMOLOG

PIE68_HSVE4
IMMEDIATE-EARLY PROTEIN IE68
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
87-121

PIE68_HSVEB
IMMEDIATE-EARLY PROTEIN IE68
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
99-133

PIE68_HSVSA
IMMEDIATE-EARLY PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
48-85

PIR05_HCMVA
HYPOTHETICAL PROTEIN IRL5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)_—
13-47

PIR12_HCMVA
HYPOTHETICAL PROTEIN IRL12
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-162

PKABL_FSVHY
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
280-314

TRANSFORMING PROT
(STRAIN HARDY-ZUCKERMAN 2)

PKABL_MLVAB
TYROSINE-PROTEIN KINASE
ABELSON MURINE LEUKEMIA VIRUS
217-251

TRANSFORMING PROT

PKAKT_MLVAT
AKT KINASE TRANSFORMING PROTEIN
AKT8 MURINE LEUKEMIA VIRUS
172-227
263-304

PKFES_FSVGA
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
23-64
104-178

TRANSFORMING PROT
(STRAIN GARDNER-ARNSTEIN)

PKFGR_FSVGR
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
218-252

TRANSFORMING PROT
(STRAIN GARDNER-RASHEED)

PKFMS_FSVMD
FMS TYROSINE KINASE TRANSFORMING
FELINE SARCOMA VIRUS
313-362
638-679
812-849

PROTEIN
(STRAIN MCDONOUGH)

PKFPS_AVISP
TYROSINE-PROTEIN KINASE
AVIAN SARCOMA VIRUS (STRAIN PRCII)
65-99

TRANSFORMING PROT

PKFPS_FUJSV
TYROSINE-PROTEIN KINASE
FUJINAMI SARCOMA VIRUS
65-99
152-251
348-398

TRANSFORMING PROT

PKITH_AMEPV
THYMIDINE KINASE
AMSACTA MOOREI ENTOMOPOXVIRUS
47-81

PKITH_CAPVK
THYMIDINE KINASE
CAPRIPOXVIRUS (STRAIN KS-1
38-82

PKITH_EBV
THYMIDINE KINASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
228-262
431-472

PKITH_HSV11
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
90-124

PKITH_HSV1C
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN CL101)
90-124

PKITH_HSV1E
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM)
90-124

PKITH_HSV1K
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
90-124

PKITH_HSV1S
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16)
90-124

PKITH_HSV23
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
91-125

PKITH_HSVBM
THYMIDINE KINASE
BOVINE HERPES VIRUS TYPE 3 (STRAIN WC11)
616-665

PKITH_HSVE4
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
19-53
178-219

PKITH_HSVEB
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
19-53
178-230

PKITH_HSVF
THYMIDINE KINASE
FELINE HERPESVIRUS (FELID HERPESVIRUS 1)
180-214

PKITH_HSVMR
THYMIDINE KINASE
MARMOSET HERPESVIRUS
52-86

PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
337-389

PKITH_PRVN3
THYMIDINE KINASE
PSEUDORABIES VIRUS (STRAIN NIA-3)
161-202

PKMIL_AVIMH
MIL SERINE/THREONINE-PROTEIN KINASE
AVIAN RETROVIRUS MH2
69-103

TRANSF

PKR15_HSVI1
GENE 15 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
190-224

PKR2_HSVI1
PROBABLE SERINE/THREONINE-PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
57-91
281-315

KINASE

PKR74_HSVI1
GENE 74 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
487-528
597-631

PKRAF_MSV36
RAF SERINE/THREONINE-PROTEIN
MURINE SARCOMA VIRUS 3611
11-45

KINASE TRANSF

PKRB1_VACCC
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
127-168

PKRB1_VACCV
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN WR)
127-168

PKRB1_VARV
30 KD PROTEIN KINASE HOMOLOG
VARIOLA VIRUS
123-171

PKRB2_VACCC
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN COPENHAGEN)
147-181

PKRB2_VACCV
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN WR)
147-181

PKRF1_VACCC
POSSIBLE PROTEIN KINASE F10
VACCINIA VIRUS (STRAIN COPENHAGEN)
169-203

PKRF1_VACCP
POSSIBLE PROTEIN KINASE F10
VACCINIA VIRUS (STRAIN L-1VP)
136-170

PKRF1_VARV
POSSIBLE PROTEIN KINASE F10
VARIOLA VIRUS
169-203

PKROS_AVISU
ROS TYROSINE KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN UR2)
111-145

PROTEIN

PKRYK_AVIR3
TYROSINE-PROTEIN KINASE
AVIAN RETROVIRUS RPL30
15-66

TRANSFORMING PROT

PKTHY_VACCV
THYMIDYLATE KINASE
VACCINIA VIRUS (STRAIN WR),
135-169

(STRAIN COPENHAGEN)

PKYES_AVISY
TYROSINE-PROTEIN KINASE
AVIAN SARCOMA VIRUS (STRAIN Y73)
174-233

TRANSFORMING PROT

PL100_ADE02
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
441-475

PL100_ADE05
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
223-264

PL100_ADE40
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 40
191-232
408-442

PL100_ADE41
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
199-233

PL52_ADE02
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
238-284
301-349

PL52_ADE05
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
238-284
301-349

PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
144-179
294-338

PMCEL_SFVKA
MRNA CAPPING ENZYME
SHOPE FIBROMA VIRUS (STRAIN KASZA)
54-152
622-656

PMCEL_VACCC
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN COPENHAGEN)
1-41
623-657

PMCEL_VACCV
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN WR)
1-41
623-657

PMCEL_VARV
MRNA CAPPING ENZYME
VARIOLA VIRUS
1-39
623-657

PMCES_VACCC
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN COPENHAGEN)
72-137
245-286

PMCES_VACCV
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN WR)
72-137
245-286

PMCES_VARV
MRNA CAPPING ENZYME
VARIOLA VIRUS
72-137
245-286

PMCE_ASFB7
MRNA CAPPING ENZYME
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
116-157
279-313
738-772

PMOVP_ORSV
MOVEMENT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
53-90

PMOVP_PPMVS
MOVEMENT PROTEIN
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN)
26-66

PMOVP_TMGMV
MOVEMENT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS
29-66

(TMV STRAIN U2)

PMOVP_TMVTO
MOVEMENT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
32-66

PMOVP_TOMVA
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LIIA)
32-80

PMOVP_TOMVL
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LII)
32-80

PMTC1_CHVN1
MODIFICATION METHYLASE CVIBI
CHLORELLA VIRUS NC-1A
222-256

PMTC2_CHVP1
MODIFICATION METHYLASE CVIAII
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
116-164

PMYC_AVIM2
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS CMII
229-266
375-419

PMYC_AVIMC
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
230-267
376-420

PMYC_AVIMD
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HBI
230-267
376-420

PMYC_AVIME
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS MH2E21
377-421

PMYC_AVIOK
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS OK10
224-261
370-414

PMYC_FLV
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA VIRUS
393-437

PMYC_FLVTT
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA PROVIRUS FTT
393-437

PNCA2_CVMA5
NUCLEOCAPSID PROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
12-46

PNCAP_AINOV
NUCLEOCAPSID PROTEIN
AINO VIRUS
177-211

PNCAP_BEV
NUCLEOCAPSID PROTEIN
BERNE VIRUS
46-83
122-156

PNCAP_BRSVA
NUCLEOCAPSID PROTEIN
BOVINE RESPIRATOR SYNCYTIAL VIRUS
62-108
163-200
248-303
343-383

(STRAIN A51908)

PNCAP_BUNGE
NUCLEOCAPSID PROTEIN
BUNYAVIRUS GERMISTON
176-228

PNCAP_BUNLC
NUCLEOCAPSID PROTEIN
BUNYAVIRUS LA CROSSE
176-229

PNCAP_BUNSH
NUCLEOCAPSID PROTEIN
BUNYAVIRUS SNOWSHOE HARE
176-229

PNCAP_BUNYW
NUCLEOCAPSID PROTEIN
BUNYAMWERA VIRUS
175-228

PNCAP_CCHFV
NUCLEOCAPSID PROTEIN
CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS
223-306
427-461

(ISOLATE C6803

PNCAP_CDVO
NUCLEOCAPSID PROTEIN
CANINE DISTEMPER VIRUS
137-174
179-217
354-402

(STRAIN ONDERSTEPOORT)

PNCAP_CHAV
NUCLEOCAPSID PROTEIN
CHANDIPURA VIRUS (STRAIN I653514)
40-84
321-369

PNCAP_CVBF
NUCLEOCAPSID PROTEIN
BOVINE CORONAVIRUS (STRAIN F15)
349-383

PNCAP_CVBM
NUCLEOCAPSID PROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
349-383

PNCAP_CVCAE
NUCLEOCAPSID PROTEIN
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
165-227

PNCAP_CVHOC
NUCLEOCAPSID PROTEIN
HUMAN CORONAVIRUS (STRAIN OC43)
349-383

PNCAP_CVMJH
NUCLEOCAPSID PROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
12-46

PNCAP_CVPFS
NUCLEOCAPSID PROTEIN
PORCINE TRANSMISSIBLE GASTROENTERITIS
149-206

CORONAVIRUS (S

PNCAP_CVPPU
NUCLEOCAPSID PROTEIN
PORCINE TRANSMISSIBLE GASTROENTERITIS
165-227

CORONAVIRUS (S

PNCAP_CVPRS
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS
149-228

(STRAIN 86/137004/BRIT

PNCAP_CVPRM
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS
149-228

(STRAIN RM4)

PNCAP_CVRSD
NUCLEOCAPSID PROTEIN
RAT CORONAVIRUS (STRAIN 681)
12-46

PNCAP_CVTKE
NUCLEOCAPSID PROTEIN
TURKEY ENTERIC CORONAVIRUS
349-383

PNCAP_DUGBV
NUCLEOCAPSID PROTEIN
DUGBE VIRUS
230-306

PNCAP_FIPV
NUCLEOCAPSID PROTEIN
FELINE INFECTIOUS PERITONITIS VIRUS
151-206

(STRAIN 79-1146)

PNCAP_HANTV
NUCLEOCAPSID PROTEIN
HANTAAN VIRUS (STRAIN 76-118)
1-35
40-74
333-381

PNCAP_HAZVJ
NUCLEOCAPSID PROTEIN
HAZARA VIRUS (ISOLATE JC280)
233-297

PNCAP_HRSV1
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
62-145
163-200
248-303
343-380

(SUBGROUP B/STRAI

PNCAP_HRSVA
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
62-145
163-200
248-303
343-380

(STRAIN A2)

PNCAP_IBVG
NUCLEOCAPSID PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
186-227

(STRAIN GRAY)

PNCAP_IBVK
NUCLEOCAPSID PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
186-220

(STRAIN KB8523)

PNCAP_JUNIN
NUCLEOCAPSID PROTEIN
JUNIN ARENAVIRUS
96-151

PNCAP_LASSG
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN GA391)
65-113
126-174

PNCAP_LASSJ
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN JOSIAH)
65-113
122-174
467-504

PNCAP_LDV
NUCLEOCAPSID PROTEIN
LACTATE DEHYDROGENASE-ELEVATING VIRUS(
3-40

PNCAP_LYCVA
NUCLEOCAPSID PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
45-117
460-497

(STRAIN ARMSTRON

PNCAP_LYCVW
NUCLEOCAPSID PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
45-79
83-117
460-497

(STRAIN WE)

PNCAP_MAGV
NUCLEOCAPSID PROTEIN
MAGUARI VIRUS
175-228

PNCAP_MEASE
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN EDMONSTON)
188-226
363-411

PNCAP_MEASH
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN HALLE)
188-226
363-411

PNCAP_MEASI
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN IP-3-CA)
188-226
363-411

PNCAP_MEASY
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN YAMAGATA-1)
188-226
363-411

PNCAP_MOPEI
NUCLEOCAPSID PROTEIN
MOPEIA VIRUS
65-106
471-505

PNCAP_MUMP1
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN SBL-1)
214-255
500-534

PNCAP_MUMPM
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
214-255

PNCAP_PHV
NUCLEOCAPSID PROTEIN
PROSPECT HILL VIRUS
1-35
40-74
337-392

PNCAP_P11HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
212-272
441-510

PNCAP_P11HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
212-272
441-510

(STRAIN WASHINGTON/1957)

PNCAP_P12HT
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
214-266
344-378

(STRAIN TOSHIBA)

PNCAP_P13B
NUCLEOCAPSID PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
200-403
446-490

PNCAP_P13H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
87-135
208-266
344-403
440-491

(STRAIN NIH 47885)

PNCAP_P14HA
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS
58-94
191-267

(STRAIN TOSHIBA)

PNCAP_P14HB
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 4B VIRUS
58-94
191-267

(STRAIN 68-333)

PNCAP_PIARV
NUCLEOCAPSID PROTEIN
PICHINDE ARENAVIRUS
65-112

PNCAP_PIRYV
NUCLEOCAPSID PROTEIN
PIRY VIRUS
71-116
325-359

PNCAP_PUUMH
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN HALLNAS B1)
1-35
40-75
337-392

PNCAP_PUUMS
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN SOTKAMO)
1-35
40-75
337-385

PNCAP_PVM
NUCLEOCAPSID PROTEIN
PNEUMONIA VIRUS OF MICE
93-141
248-303
344-388

PNCAP_RABVA
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN AVO1)
133-167

PNCAP_SEND5
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
212-272
345-404

PNCAP_SENDE
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN ENDERS)
212-272
345-404

PNCAP_SENDZ
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z)
212-272
345-408

PNCAP_SEOUS
NUCLEOCAPSID PROTEIN
SEOUL VIRUS (STRAIN SR-11)
1-35
40-74
333-381

PNCAP_SV41
NUCLEOCAPSID PROTEIN
SIMIAN VIRUS 41
215-267
372-406
418-466

PNCAP_SYNV
NUCLEOCAPSID PROTEIN
SONCHUS YELLOW NET VIRUS
332-366

PNCAP_TACV
NUCLEOCAPSID PROTEIN
TACARIBE VIRUS
50-84
230-264

PNCAP_TOSV
NUCLEOCAPSID PROTEIN
TOSCANA VIRUS
215-249

PNCAP_TSWVB
NUCLEOCAPSID PROTEIN
TOMATO SPOTTED WILT VIRUS
79-120

(BRAZILIAN ISOLATE CPNH1/BR

PNCAP_TSWVH
NUCLEOCAPSID PROTEIN
TOMATO SPOTTED WILT VIRUS
79-120

(HAWAIIAN ISOLATE)

PNCAP_TSWVL
NUCLEOCAPSID PROTEIN
TOMATO SPOTTED WILT VIRUS (STRAIN L3)
79-120

PNCAP_UUK
NUCLEOCAPSID PROTEIN
UUKUNIEMI VIRUS
51-102

PNCAP_VHSV0
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
249-325

(STRAIN 07-71)

PNCAP_VHSVM
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
142-180
249-325

(STRAIN MAKAH)

PNCAP_VSVIG
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
42-108

(SEROTYPE INDIANA/STRAIN G

PNCAP_VSVJO
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
67-115

(SEROTYPE NEW JERSEY/STRA

PNCAP_VSVSJ
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
42-115

(STRAIN SAN JUAN)

PNEF_HV2BE
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
7-48

(ISOLATE BEN)

PNEF_HV2D1
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
7-41

(ISOLATE D194)

PNEF_HV2RO
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
112-160

(ISOLATE ROD)

PNEF_HV2SB
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
109-150

(ISOLATE SBLISY)

PNEF_HV2ST
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
108-149

(ISOLATE ST)

PNEF_SIVAI
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
96-140

(ISOLATE AGM/CLONE GR1

PNEF_SIVS4
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
9-43
233-267

(F236/SMH4 ISOLATE)

PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
47-81

BLACK DUCK/AUSTRALIA/702/78

PNRAM_IACAO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
33-74

CAMEL/MONGOLIA/82)

PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-91

CHILE/1/83)

PNRAM_IACKQ
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
349-383

CHICKEN/PENNSYLVANIA/1370/

PNRAM_IACKR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
349-383

CHICKEN/PENNSYLVANIA/8125/

PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
14-48

DUCK/GERMANY/49)

PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
14-48
194-229

FOWL PLAGUE VIRUS/WEYBRID

PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
10-47
193-227

EQUINE/COR/16/74

PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
5-44
361-402

EQUINE/KENTUCKY/1/81)

PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-91

KIEV/59/79)

PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-91

LENINGRAD/54/1)

PNRAM_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-88

MEMPHIS/1/71H-A/BELLAMY/42N

PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-91

RUDDY TURNSTONE/NEW JERSE

PNRAM_IASH2
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
10-44

SHEARWATER/AUSTRALIA/72)

PNRAM_IATKR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
7-41

TURKEY/OREGON/71)

PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-83

TERN/AUSTRALIA/G70C/75)

PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-91

USSR/90/77)

PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-91

WHALE/MAINE/1/84)

PNRAM_INBBE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-46
348-382

BEIJING/1/87)

PNRAM_INBHK
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-46
349-383

HONG KONG/8/73)

PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-46
349-383

LEE/40)

PNRAM_INBLN
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-39
348-382

LENINGRAD/179/86),(STRAIN B/M

PNRAM_INBMD
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-39
349-383

MARYLAND/59)

PNRAM_INBMF
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-46
348-382

MEMPHIS/3/89)

PNRAM_INBOR
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-46
349-383

OREGON/5/80)

PNRAM_INBSI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-39
349-383

SINGAPORE/222/79)

PNRAM_INBUS
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-39
349-383

USSR/100/83)

PNRAM_INBVI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
5-39
348-382

VICTORIA/3/85

PNS2_SIDEV
PROBABLE STRUCTURAL PROTEIN
BOMBYX DENSONUCLEOSIS VIRUS
790-828

PRECURSOR

PNSS_INSVN
NON-STRUCTURAL PROTEIN
IMPATIENS NECROTIC SPOT VIRUS
95-129
204-238

(STRAIN NL-07)

PNSS_TSWVB
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
3-37

(BRAZILIAN ISOLATE CPNH1/BR

PNSS_TSWVL
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
3-37

(STRAIN L3)

PNTP1_AMEPV
NUCLEOSIDE TRIPHOSPHATASE I
AMSACTA MOOREI ENTOMOPOXVIRUS
28-69
110-144

PNTP1_CBEPV
NUCLEOSIDE TRIPHOSPHATASE I
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
122-169
415-449
514-555

PNTP1_VACCC
NUCLEOSIDE TRIPHOSPHATASE I
VACCINIA VIRUS (STRAIN COPENHAGEN)
56-90
248-289
549-599

PNTP1_VACCV
NUCLEOSIDE TRIPHOSPHATASE I
VACCINIA VIRUS (STRAIN WR)
56-90
248-289
549-599

PNTP1_VARV
NUCLEOSIDE TRIPHOSPHATASE I
VARIOLA VIRUS
154-195
455-505

PP100_HSV6U
MAJOR ANTIGENIC STRUCTURAL PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/
189-223
689-735

STRAIN UGANDA-1102)

PPAP1_VACCC
POLY(A) POLYMERASE CATALYTIC
VACCINIA VIRUS (STRAIN COPENHAGEN)
121-180

SUBUNIT

PPAP1_VACCV
POLY(A) POLYMERASE CATALYTIC
VACCINIA VIRUS (STRAIN WR)
121-180

SUBUNIT

PPAP1_VARV
POLY(A) POLYMERASE CATALYTIC
VARIOLA VIRUS
121-180

SUBUNIT

PPAP2_CAPVK
POLY(A) POLYMERASE REGULATORY
CAPRIPOXVIRUS (STRAIN KS-1)
112-146

SUBUNIT

PPAP2_FOWPV
POLY(A) POLYMERASE REGULATORY
FOWLPOX VIRUS
95-154

SUBUNIT

PPAP2_VACCC
POLY(A) POLYMERASE REGULATORY
VACCINIA VIRUS (STRAIN COPENHAGEN)
203-249

SUBUNIT

PPAP2_VACCV
POLY(A) POLYMERASE REGULATORY
VACCINIA VIRUS (STRAIN WR)
203-249

SUBUNIT

PPAP2_VARV
POLY(A) POLYMERASE REGULATORY
VARIOLA VIRUS
203-249

SUBUNIT

PPE12_NPVAC
12.1 KD PROTEIN IN PE 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR
15-56
60-105

POLYHEDROSIS VIRUS

PPE12_NPVOP
11.5 KD PROTEIN IN P26 5′REGION
ORGYIA PSEUDOTSUGATA MULTICAPSID
11-98

POLYHEDROSIS VIRUS

PPE38_NPVAC
MAJOR IMMEDIATE EARLY PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
19-77
197-249

POLYHEDROSIS VIRUS

PPE38_NPVOP
MAJOR IMMEDIATE EARLY PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
190-240

POLYHEDROSIS VIRUS

PPE48_NPVAC
48.3 KD PROTEIN IN PE-P26
AUTOGRAPHA CALIFORNICA NUCLEAR
4-42
48-89
97-131

INTERGENIC REGION
POLYHEDROSIS VIRUS

PPE48_NPVOC
47.3 KD PROTEIN IN PE-P26
ORGYIA PSEUDOTSUGATA MULTICAPSID
47-82
165-199

INTERGENIC REGION
POLYHEDROSIS VIRUS

PPIV2_ADE07
MATURATION PROTEIN
HUMAN ADENOVIRUS TYPE 7
414-448

PPIV6_ADE02
PROTEIN VI PRECURSOR
HUMAN ADENOVIRUS TYPE 2
37-71

PPIV6_ADE05
PROTEIN VI PRECURSOR
HUMAN ADENOVIRUS TYPE 5
37-71

PPOL1_BAYMG
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
329-363
743-777
957-991
1265-
2229-
2309-
2368-

(GERMAN ISOLATE)

1299
2266
2352
2404

PPOL1_BAYMJ
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
329-363
671-705
743-777
957-994
1265-
2227-
2307-
2366-

(JAPANESE STRAIN 11-1)

1299
2264
2350
2402

PPOL1_GCMV
RNA1 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME MOSAIC
120-161
165-216
230-273
377-415

VIRUS

PPOL1_GFLV
RNA1 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
170-212
480-519
636-677
691-725
1157-
1378-
1906-

1196
1412
1943

PPOL1_TBRVS
RNA1 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
223-270
929-977

PPOL1_TRSVR
RNA1 POLYPROTEIN
TOMATO RINGSPOT VIRUS
161-206

(ISOLATE RASPBERRY)

PPOL2_BAYMG
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
240-281
669-732
739-773
787-828

(GERMAN ISOLATE)

PPOL2_BAYMJ
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
669-732
739-773
787-828

(JAPANESE STRAIN II-1)

PPOL2_GFLV
RNA2 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
365-406
542-602

PPOL2_TBRVS
RNA2 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
4-38

PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS
158-206
334-368

(ISOLATE RASPBERRY)

PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27)
849-886
1008-
1382-
1459-
1576-

1064
1416
1507
1617

PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
244-289
446-491
629-663
1033-
1303-
1392-
1869-
2226-

(ISOLATE NADL)

1074
1344
1443
1910
2260

PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
245-289
446-491
629-663
1033-
1303-
1392-
1779-
2136-

(STRAIN SD-1)

1074
1344
1443
1820
2170

PPOLG_BYMV
GENOME POLYPROTEIN
BEAN YELLOW MOSAIC VIRUS
96-130

PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21 (STRAIN COE)
9-43
562-596
664-698
1045-
1498-
1607-
1805-
1901-

1100
1546
1648
1839
1946

PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9 (STRAIN GRIGGS)
15-49
1040-
1895-

1086
1940

PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
15-49
1021-
1876-

1067
1921

PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIEVIRUS B3
15-49
1024-
1879-

1070
1924

PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
15-49
642-681
1022-
1877-

1068
1922

PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
15-49
1024-
1879-

1070
1924

PPOLG_CYVV
GENOME POLYPROTEIN
CLOVER YELLOW VEIN VIRUS
120-154

PPOLG_DEN18
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN 836-1)
74-108

PPOLG_DEN1A
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN AHF 82-80)
74-108

PPOLG_DEN1C
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN CV1636/77)
74-108

PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1
74-108
832-873
960-994
1142-
1386-
1614-
2518-
2946-

(STRAIN SINGAPORE S275/90)

1179
1420
1648
2554
3016

PPOLG_DEN1W
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1
74-108
833-874
961-995
1143-

(STRAIN WESTERN PACIFIC)

1180

PPOLG_DEN21
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M1)
448-492

PPOLG_DEN22
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M2)
448-495

PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
74-108
728-777
961-995
1146-
1246-
1418-
1615-
2517-

1180
1280
1452
1649
2551

PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53)
74-108
728-777
961-995
1146-
1246-
1418-
1615-
2485-

1180
1280
1452
1649
2551

PPOLG_DEN2D
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN D2-04)
728-777

PPOLG_DEN2H
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TH-36)
497-546

PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMAICA)
74-108
728-777
961-995
1146-
1246-
1418-
1615-
2517-

1180
1280
1452
1649
2551

PPOLG_DEN2N
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN NEW GUINEA C)
213-247
398-432

PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR159/S1)
74-108
728-777
832-875
961-995
1146-
1246-
1418-
1615-

1180
1280
1452
1649

PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974)
448-497
552-595
681-715
866-900
966-
1205-

1000
1239

PPOLG_DEN2U
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PUO-218)
614-663

PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
830-872
959-993
1385-
2224-
2480-
2704-
2940-
2980-

1419
2258
2521
2738
2978
3014

PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
957-993
1380-
2514-
2701-
2941-
2977-

1414
2555
2735
2975
3011

PPOLG_EC11G
GENOME POLYPROTEIN
ECHOVIRUS 11 (STRAIN GREGORY)
213-259
1079-

1113

PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
1074-
1472-
1522-
1665-
1789-

1115
1518
1570
1706
1823

PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
145-179
1076-
1474-
1524-
1667-

(STRAIN EMC-B NONDIABETO

1117
1520
1572
1708

PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
145-179
1076-
1474-
1524-
1667-

(STRAIN EMC-D-DIABETOGEN

1117
1520
1572
1708

PPOLG_ENMG3
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
145-179

(STRAIN 37A)

PPOLG_ENMGO
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
78-112

PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
221-255
294-328
578-612
1103-
1493-
2165-

(STRAIN A10-61)

1153
1528
2200

PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
220-254
293-327
577-611
1103-
1493-
2164-

(STRAIN A12)

1164
1528
2199

PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
221-255
1103-
1493-
2164-

(STRAINS O1K AND O1BFS)

1153
1528
2199

PPOLG_FMDVS
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
87-128
693-728

(STRAIN C1-SANTA PAU [C-S

PPOLG_FMDVT
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
221-255
283-317
577-611

(STRAIN C1)

PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
364-398

PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT)
440-493
626-660
695-729
1033-
1190-
1307-
1779-
2136-

1070
1235
1343
1820
2170

2466-
2525-
2667-
3057-
3152-
3406-

2500
2559
2708
3098
3193
3440

PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN BRESCIA)
440-493
626-660
695-729
1033-
1173-
1779-
2136-
2388-

1070
1235
1820
2170
2436

PPOLG_HCVBK

2466-
2525-
2667-
3057-
3152-
3406-
3521-

2500
2559
2708
3098
3195
3440
3562

PPOLG_HCVE0
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK)
357-398
2328-

2365

PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE EC10)
65-99

PPOLG_HCVH4
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H)
364-398

PPOLG_HCVH7
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-476)
364-398

PPOLG_HCVH8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCT27)
236-270

PPOLG_HCVHK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCT18)
248-282

PPOLG_HCVJ2
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-KF)
357-398

PPOLG_HCVJ5
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J2)
357-398

PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J5)
364-398

PPOLG_HCVJ7
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6)
364-401
1716-
2082-

1750
2116

PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J7)
364-398

PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8)
364-398
1716-
2082-
2468-
2538-

1750
2116
2502
2572

PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
357-405
2331-

2365

PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-JT)
357-391
2331-

2365

PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE TAIWAN)
357-398
2328-
2444-

2365
2503

PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
2-43
101-135
203-237
870-904
1021-
1117-

1055
1151

PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
2-43
101-135
203-237
870-904
1021-
1117-

1055
1151

PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
2-43
101-135
203-237
870-904
1021-
1117-

1055
1151

PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN CR326)
2-43
101-135
203-237

PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN GA76)
80-114
182-216

PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
2-43
101-135
203-237
870-904
1021-
1103-

1055
1151

PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
2-43
101-135
203-237
870-904
1021-
1103-

1055
1151

PPOLG_HPAVS
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
2-43
101-135
203-237
870-904
1021-
1103-

1055
1158

PPOLG_HPAVT
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
6-47
105-139
207-241
849-908
1025-
1115-
1158-

(STRAIN AGM-27)

1059
1155
1198

PPOLG_HRV14
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
2-43
101-135
203-237

(STRAIN CY-145)

PPOLG_HRV1A
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14 (HRV-14)
1020-
1393-
1479-
1877-

1054
1427
1513
1920

PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1A (HRV-1A)
362-396

PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B (HRV-1B)
387-421
863-904
1133-

1168

PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2 (HRV-2)
856-897
1126-
1552-

1169
1593

PPOLG_HUEV7
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89 (HRV-89)
1566-

1607

PPOLG_IBDVO
GENOME POLYPROTEIN
HUMAN ENTEROVIRUS 70
359-397
876-917
1032-
1403-
1896-

(STRAIN J670/71)

1088
1441
1934

PPOLG_JAEV1
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
250-291
475-524

(STRAIN OH)

PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
74-122
211-256
539-576
980-
1409-
2463-
2739-
2782-

(STRAIN SA-14)

1014
1450
2497
2777
2823

3322-
3387-

3359
3428

PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
74-122
211-256
539-576
980-
1409-
2463-
2739-
2782-

(STRAIN SA(V))

1014
1450
2497
2777
2823

3322-
3387-

3359
3428

PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
74-128
211-256
539-576
980-
1409-
2463-
2739-
2782-

(STRAIN JAOARS982)

1014
1450
2497
2777
2823

3322-
3387-

3359
3428

PPOLG_KUNJM
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
7-48
138-183
467-504
908-942
1337-

(STRAIN NAKAYAMA)

1378

PPOLG_LANVT
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
74-108
207-251
851-885
2464-
2528-
2740-
3325-
3389-

2498
2579
2778
3359
3423

PPOLG_LANVY
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
68-102
431-465
962-996
1431-
1932-
2536-
2967-
3003-

1472
1966
2591
3001
3037

3102-

3145

PPOLG_LIV
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN YELANTSEV)
68-102
431-465

PPOLG_LIVSB
GENOME POLYPROTEIN
LOUPING ILL VIRUS (LI)
68-123
231-272
431-465

PPOLG_MCFA
GENOME POLYPROTEIN
LOUPING ILL VIRUS (STRAIN SB 526)
151-185

PPOLG_MVEV
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT
80-114
908-942
2049-
2630-
3036-
3290-

(CFA FLAVIVIRUS)

2087
2689
3095
3341

PPOLG_OMV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
67-115
209-253
853-887
979-
1408-

1013
1449

PPOLG_PEMVC
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
418-515
946-984
1072-

1106

PPOLG_POL1M
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE)
55-100
207-248
377-411
704-738
827-862
877-947
1021-
1167-

1055
1201

1488-
1787-
1948-
2202-
2258-
2805-
3003-

1529
1821
1982
2236
2310
2839
3037

PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
9-43
1046-
1414-
1500-
1806-
1902-

1101
1448
1548
1840
1947

PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
9-43
899-933
1047-
1415-
1501-
1610-
1808-
1904-

1102
1449
1549
1651
1842
1949

PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
9-43
897-831
1045-
1413-
1502-
1608-
1806-
1902-

1100
1447
1547
1649
1840
1947

PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
9-43
897-831
1045-
1413-
1502-
1608-
1806-
1902-

1100
1447
1547
1649
1840
1947

PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAIN 23127)
9-43
896-930
1044-
1412-
1498-
1607-
1805-
1901-

1098
1446
1546
1648
1839
1946

PPOLG_PPVD
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAINS P3/LEON/
9-43
896-930
1044-
1412-
1498-
1607-
1805-
1901-

37 AND P3/LEON 12A[1]B)

1099
1446
1546
1648
1839
1946

PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D)
164-208
441-503
728-769
815-867
921-955
1741-

1782

PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN EL AMAR)
116-157
784-818
1146-

1197

PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT)
164-208
403-437
440-502
727-768
814-873
920-954
1740-

1781

PPOLG_PRSVH
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC)
164-208
403-437
440-502
727-768
814-866
920-954
1740-

1781

PPOLG_PRSVP
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
68-102
434-468

(STRAIN P/MUTANT HA)

PPOLG_PRSVW
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
325-359

(STRAIN P/MUTANT HA 5-1)

PPOLG_PSBMV
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
325-359

(STRAIN W)

PPOLG_PVYC
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC (STRAIN DPD1)
253-315
355-389
529-589
935-976
984-
1080-
1588-
1808-

1018
1177
1627
1860

1971-
2379-
2712-
2870-

2015
2413
2746
2907

PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN C)
131-196
701-735
802-856

PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN)
144-181
701-735
802-863
901-949
1401-
1492-
1728-
1777-

1441
1526
1772
1818

2272-

2306

PPOLG_PVYO
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N)
140-196
211-245
701-735
802-863
1401-
1492-
1728-
1777-

1441
1526
1772
1818

1929-

1970

PPOLG_PWVSE
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN O)
140-196
211-245
701-735
802-856

PPOLG_PWVTB
GENOME POLYPROTEIN
PASSIONFRUIT WOODINESS VIRUS
203-237

(STRAIN SEVERE)

PPOLG_PYFV1
GENOME POLYPROTEIN
PASSIONFRUIT WOODINESS VIRUS
203-237

(STRAIN TIP BRIGHT)

PPOLG_STEVM
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121)
194-228
1111-
1379-
1858-
1950-
2703-

1172
1413
1899
1991
2737

PPOLG_SVDVH
GENOME POLYPROTEIN
ST. LOUIS ENCEPHALITIS VIRUS (STRAIN MS1-7)
106-143
673-707
739-773
975-
1404-

1009
1438

PPOLG_SVDVU
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
15-49
1024-
1779-
1890-

(STRAIN H/3 ′76)

1070
1813
1924

PPOLG_TBEVS
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
15-49
1024-
1890-

(STRAIN UKG/27/72)

1070
1924

PPOLG_TBEVW
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
68-140
231-272
431-465
1158-
1431-
1929-
2182-
2535-

(STRAIN SOFJIN)

1192
1472
1966
2216
2590

2965-
3051-
3100-

2999
3092
3143

PPOLG_TEV
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
68-140
231-272
431-465
1158-
1431-
1932-
2536-
2967-

(WESTERN SUBTYPE)

1192
1492
1966
2591
3001

3003-
3053-
3102-

3037
3094
3145

PPOLG_TMEVB
THEILER'S MURINE ENCEPHALOMYELITIS
TOBACCO ETCH VIRUS
73-124
166-222
540-584
720-782
828-925
1148-
1416-
1494-

VIRUS (S

1192
1460
1535

1668-
1747-
1792-
2395-
2787-

1702
1781
1826
2434
2821

PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1306-
1483-
1601-

VIRUS (STRAIN BEAN
1340
1518
1635

PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1304-
1481-
1599-

VIRUS (STRAIN DA)
1338
1516
1663

PPOLG_TUMV
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1306-
1483-
1601-

VIRUS (STRAIN GDVII)
1340
1518
1635

PPOLG_TVMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS
216-259
314-362
494-528
768-839
1443-

1477

PPOLG_WMV2
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS
34-68
408-449
667-704
761-813
851-885
969-
1031-
1643-

1017
1072
1677

1686-
2316-
2701-
2814-

1725
2374
2749
2848

PPOLG_WNV
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
68-105
202-236

PPOLG_YEFV1
GENOME POLYPROTEIN
WEST NILE VIRUS
74-108
207-251
847-881
973-
1413-
2461-
2525-
2737-

1007
1447
2495
2576
2775

3320-
3385-

3357
3426

PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
418-452
525-563
728-768
1388-
2231-
2477-
2958-
3097-

1444
2276
2565
2996
3143

PPOLG_YEFV8
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
418-452
525-563
728-768
1388-
2231-
2477-
2958-
3097-

(STRAIN PASTEUR 17D-204)

1444
2276
2565
2996
3143

PPOLH_POL1M
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
75-116
418-452
525-563
728-768

(STRAIN 1899/81)

PPOLN_EEVVT
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
9-43
1047-
1415-
1501-
1610-
1808-
1904-

1102
1449
1549
1651
1842
1949

PPOLN_FCVC6
NONSTRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
345-382
898-932
1945-

(STRAIN TRINIDAD

1979

PPOLN_FCVF9
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN CFI/68 FIV)
510-544

PPOLN_HEVBU
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN F9)
4-45
369-410
986-
1023-

1020
1061

PPOLN_HEVME
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN BURMA)
338-379
1139-

1177

PPOLN_HEVMY
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MEXICO)
338-379

PPOLN_HEVPA
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MYANMAR)
338-379
1139-

1184

PPOLN_MIDDV
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN PAKISTAN)
337-378
1138-

1176

PPOLN_ONNVG
NONSTRUCTURAL POLYPROTEIN
MIDDELBURG VIRUS
922-977

PPOLN_RHDV
NONSTRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
899-933
1942-
2444-

1986
2502

PPOLN_RRVN
NON-STRUCTURAL POLYPROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
188-234
306-347
409-457
1657-

1716

PPOLN_RRVT
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092)
895-929
1928-
2414-

1962
2467

PPOLN_RUBVT
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
597-631
1083-

1136

PPOLN_SFV
NONSTRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN THERIEN)
1506-
1551-
1730-
1862-

1540
1585
1767
1896

PPOLN_SINDO
NONSTRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
1094-
2358-

1128
2392

PPOLN_SINDV
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS
919-971
1491-
1961-
2444-

(SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)

1525
1996
2478

PPOLR_EMPV
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAIN HRSP)
1491-
1959-
2442-

1525
1994
2476

PPOLS_EEEV
RNA REPLICASE POLYPROTEIN
EGGPLANT MOSAIC VIRUS
899-933
1127-

1161

PPOLS_EEEV3
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
372-406
914-951

PPOLS_EEVV8
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
373-407
915-952

(STRAIN VA33[TEN BRO

PPOLS_EEVVT
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1216-

(STRAIN TC-83)
1250

PPOLS_IBDV5
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1216-

(STRAIN TRINIDAD
1250

PPOLS_IBDVA
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
231-286
470-523

(STRAIN 52/70)

PPOLS_IBDVC
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
231-286
470-523

(STRAIN AUSTRALI

PPOLS_IBDVE
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
231-286
470-523

(STRAIN CU-1)

PPOLS_IBDVP
NONSTRUCTURAL PROTEIN VP4
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
231-286
304-340

(STRAIN E)

PPOLS_IBDVS
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
115-149
212-267
451-504

(STRAIN PBG-98)

PPOLS_IPNVJ
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
249-283
470-523

(STRAIN STC)

PPOLS_IPNVN
STRUCTURAL POLYPROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS
69-103
723-785

(SEROTYPE JASPER)

PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS
716-786

(STRAIN N1)

PPOLS_RRV2
STRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
1204-

1238

PPOLS_RRVN
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN 213970)
35-69

PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092)
369-403
939-973

PPOLS_RUBVH
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
939-973

PPOLS_RUBVR
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE STRAIN HPV77)
999-

1036

PPOLS_RUBVT
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE STRAIN RA27/3)
999-

1036

PPOLS_SINDO
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN THERIEN)
999-

1036

PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS
362-396

(SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)

PPOLS_SINDW
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
362-396

PPOLS_WEEV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS
34-68

(WILD TYPE SB DERIVED FROM STRAIN AR339)

PPOL_BAEVM
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
913-947

PPOL_BLVAU
POL POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
42-80
676-743
794-832
1001-

1042

PPOL_BLVJ
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS
625-673

(AUSTRALIAN ISOLATE)

PPOL_CAEVC
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS
625-673

(JAPANESE ISOLATE BLV-1)

PPOL_CAMVD
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
879-934

(STRAIN CORK)

PPOL_COYMV
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
177-211

PPOL_EIAV9
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS
87-121
333-367
447-498
838-876
896-930
1310-

1351

PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
513-566
1022-

(CLONE 1369)

1056

PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
513-566
1022-

(CLONE CL22)

1056

PPOL_FENV1
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
512-565
1021-

(ISOLATE WYOMING)

1055

PPOL_FIVPE
POL POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECE1
533-600
623-659
858-899

PPOL_FIVSD
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
429-473
606-663

(ISOLATE PETALUMA)

PPOL_FIVT2
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
428-473
606-642

(ISOLATE SAN DIEGO)

PPOL_FMVD
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
428-472
595-662

(ISOLATE TM2)

PPOL_FOAMV
ENZYMATIC POLYPROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
403-437

PPOL_GALV
POL POLYPROTEIN
HUMAN SPUMARETROVIRUS (FOAMY VIRUS)
140-174
217-256
285-326

PPOL_HTL1A
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
528-562
673-740

PPOL_HTL1C
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
670-711

(STRAIN ATK)

PPOL_HV1A2
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
670-711

(CARIBBEAN ISOLATE)

PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
501-537
606-664

(ARV2/SF2 ISOLATE

PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
513-549
639-676

(BH10 ISOLATE)

PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
513-549
618-676

(BH5 ISOLATE)

PPOL_HV1EL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
513-549
618-676

(BRU ISOLATE)

PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
626-663

(ELI ISOLATE)

PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
501-537
606-664

(HXB2 ISOLATE)

PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-541
610-668

(JRCSF ISOLATE)

PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
476-536
601-663

(MAL ISOLATE)

PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
504-540
609-667

(MN ISOLATE)

PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
501-537
627-664

(NEW YORK-5 ISOL

PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
626-663

(NDK ISOLATE)

PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
501-537
606-664

(OYI ISOLATE)

PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
513-549
693-676

(PV22 ISOLATE)

PPOL_HV1U4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
605-663

(RF/HAT ISOLATE)

PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
601-663

(STRAIN UGANDAN

PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
626-663

(Z2/CDC-Z34 ISOLA

PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
49-83
484-582
653-687
817-851

(ISOLATE BEN)

PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
356-390
464-562
632-666

(ISOLATE CAM2)

PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
502-600
671-705

(ISOLATE D194)

PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
376-410
484-526
529-577
653-687

(ISOLATE D205,7)

PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
464-562
633-667

(ISOLATE GHANA-1)

PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
44-78
356-390
464-529
633-667

(ISOLATE NIH-Z)

PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
357-391
465-563
634-668

(ISOLATE ROD)

PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
46-80
473-562
633-667

(ISOLATE SBLISY)

PPOL_IPHA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
484-518
522-577
653-687

(ISOLATE ST)

PPOL_JSRV
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
462-503

PPOL_MLVAK
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
190-231

PPOL_MLVAV
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
325-392

PPOL_MLVF5
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
677-744

PPOL_MLVFF
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS
682-749

(ISOLATE 57)

PPOL_MLVFP
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS
682-749

(ISOLATE FB29)

PPOL_MLVMO
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS
682-749

(ISOLATE PVC-211)

PPOL_MLVRD
POL POLYPROTEIN
MOLONEY MURINE LEUKEMIA VIRUS
677-744

PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
677-744

PPOL_MPMV
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
62-129

(STRAIN KAPLAN)

PPOL_OMVVS
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
470-504
578-613

PPOL_RSVP
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
470-505
855-910

PPOL_RTBV
POL POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
646-684

PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
7-44
59-96
101-135
176-236
325-362
433-474
1005-
1405-

1039
1439

PPOL_SFV1
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
7-44
59-96
101-135
176-236
325-362
433-474
1005-
1405-

(ISOLATE PHILIPPINES)

1039
1439

PPOL_SFV3L
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
349-383
427-464
494-535

PPOL_SIVA1
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
124-165
429-467
496-530

PPOL_S1VA2
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
351-385
637-678
737-771
938-979

(AGM155 ISOLATE)

PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
45-86

(AGM266 ISOLATE)

PPOL_SIVAI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
477-516
642-683
742-783

(AGM3 ISOLATE)

PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
175-209
476-515
641-700
942-983
1020-

(ISOLATE AGM/CLONE GR1

1054

PPOL_SIVCZ
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
657-698
757-798

(TYO-1 ISOLATE)

PPOL_SIVGB
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
527-561
626-688

(S1V(CPZ))

PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
9-57
446-483
629-673
793-827
912-946

(ISOLATE GB1)

PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
485-519
654-688

(MM142-83 ISOLATE)

PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
485-519
654-688

(K6W ISOLATE)

PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
448-482
617-651

(F236/SMH4 ISOLATE)

PPOL_SOCMV
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
451-485
620-654

(PBJ/BC13 ISOLATE)

PPOL_SRV1
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
247-295
372-416

PPOL_VILV
POL POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
470-504
578-613

PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
489-524
874-929

PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/
489-524
874-929

CLONE LV1-1KS1)

PPP15_HCMVA
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/
489-524
874-929

CLONE LV1-1KS2)

PPR73_MMTVB
LARGE STRUCTURAL PHOSPHOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
116-150
187-221

PP150

PPR73_MMTVC
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
152-200

PPR73_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
20-79

PPR7L_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
61-95
142-201

PPR7R_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
145-204
270-311

PPYHD_CPVBM
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
141-200
266-307

PPYHD_NPVAC
POLYHEDRIN PRECURSOR
BOMBYX MORI CYTOPLASMIC POLYHEDROSIS
13-85

VIRUS

PPYHD_NPVAS
POLYHEDRIN
AUTOGRAPHA CALIFORNICA NUCLEAR
13-47

POLYHEDROSIS VIRUS

PPYHD_NPVBM
POLYHEDRIN
AGROTIS SEGETUM NUCLEAR POLYHEDROSIS
14-48

VIRUS

PPYHD_NPVBS
POLYHEDRIN
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
12-54

PPYHD_NPVLD
POLYHEDRIN
BUZURA SUPPRESSARIA NUCLEAR
14-48

POLYHEDROSIS VIRUS

PPYHD_NPVMB
POLYHEDRIN
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
14-48

POLYHEDROSIS V

PPYHD_NPVOP
POLYHEDRIN
MAMESTRA BRASSICAE NUCLEAR
14-48

POLYHEDROSIS VIRUS

PPYHD_NPVOS
POLYHEDRIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
13-47

POLYHEDROSIS VIRUS

PPYHD_NPVPF
POLYHEDRIN
ORGYIA PSEUDOTSUGATA SINGLE CAPSID
14-48

NUCLEAR POLYHED

PPYHD_NPVSE
POLYHEDRIN
PANOLIS FLAMMEA MULTIPLE NUCLEOCAPSID
14-48

POLYHEDROSIS

PPYHD_NPVSF
POLYHEDRIN
SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS
14-48

VIRUS (STRAIN

PPYHD_NPVSL
POLYHEDRIN
SPODOPTERA FRUGIPERDA NUCLEAR
14-48

POLYHEDROSIS VIRUS

PRASK_MSVKI
POLYHEDRIN
SPODOPTERA LITTORALIS NUCLEAR
17-51

POLYHEDROSIS VIRUS

PREV_BIV27
TRANSFORMING PROTEIN 21
KIRSTEN MURINE SARCOMA VIRUS
142-176

PREV_EIAV9
REV PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
77-115

(ISOLATE 127)

PREV_EIAVC
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
51-89

(CLONE 1369)

PREV_EIAVY
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
51-89

(CLONE CL22)

PREV_HV112
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
81-119

(ISOLATE WYOMING)

PREV_HV1A2
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69

(CLONE 12)

PREV_HV1B1
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
32-69

(ARV2/SF2 ISOLATE

PREV_HV1B8
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69

(BH10 ISOLATE)

PREV_HV1BN
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
25-59

(BH8 ISOLATE)

PREV_HV1BR
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
22-59

(BRAIN ISOLATE)

PREV_HV1EL
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69

(BRU ISOLATE)

PREV_HV1H2
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
32-66

(ELI ISOLATE)

PREV_HV1J3
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69

(HXB2 ISOLATE)

PREV_HV1JR
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
29-63

(JH3 ISOLATE)

PREV_HV1MA
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
31-66

(JRCSF ISOLATE)

PREV_HV1MN
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
31-66

(MAL ISOLATE)

PREV_HV1OY
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
31-66

(MN ISOLATE)

PREV_HV1PV
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
32-69

(OYI ISOLATE)

PREV_HV1S3
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69

(PV22 ISOLATE) AN

PREV_HV1SC
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69

(SF33 ISOLATE)

PREV_SIVA1
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
32-69

(SC ISOLATE)

PREV_SIVAG
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
26-77

(AGM155 ISOLATE)

PREV_SIVAI
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
26-77

(AGM3 ISOLATE)

PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
29-77

(ISOLATE AGM/CLONE GR1

PREV_SIVCZ
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
28-75

(TYO-1 ISOLATE)

PREV_VILV
REV PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
33-67

PRIR1_ASFM2
REV PROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
21-62

PRIR1_EBV
RIBONUCLEOSIDE-DIPHOSPHATE
AFRICAN SWINE FEVER VIRUS
7-41
88-133
635-683

REDUCTASE LAR
(ISOLATE MALAWI LIL 20/1)

PRIR1_HCMVA
RIBONUCLEOSIDE-DIPHOSPHATE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
213-247
689-723

REDUCTASE LAR

PRIR1_HSVEB
RIBONUCLEOSIDE-DIPHOSPHATE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
632-668

REDUCTASE LAR

PRIR1_HSVSA
RIBONUCLEOSIDE-DIPHOSPHATE
EQUINE HERPESVIRUS TYPE 1
76-110

REDUCTASE LAR
(STRAIN AB4P)

PRIR1_VACCC
RIBONUCLEOSIDE-DIPHOSPHATE
HERPESVIRUS SAIMIRI (STRAIN 11)
324-365

REDUCTASE LAR

PRIR1_VACCV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN COPENHAGEN)
367-402

REDUCTASE LAR

PRIR1_VARV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN WR)
367-402

REDUCTASE LAR

PRIR1_VZVD
RIBONUCLEOSIDE-DIPHOSPHATE
VARIOLA VIRUS
367-402

REDUCTASE LAR

PRIR2_EBV
RIBONUCLEOSIDE-DIPHOSPHATE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
223-257

REDUCTASE LAR

PRIR2_HSVB3
RIBONUCLEOSIDE-DIPHOSPHATE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
89-137

REDUCTASE SMA

PRIR2_HSVEB
RIBONUCLEOSIDE-DIPHOSPHATE
BOVINE HERPESVIRUS TYPE 1 (STRAIN 34)
101-135

REDUCTASE SMA

PRIR2_HSVSA
RIBONUCLEOSIDE-DIPHOSPHATE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
106-140

REDUCTASE SMA

PRIR2_SFVKA
RIBONUCLEOSIDE-DIPHOSPHATE
HERPESVIRUS SAIMIRI (STRAIN 11)
125-159

REDUCTASE SMA

PRIR2_VACCC
RIBONUCLEOSIDE-DIPHOSPHATE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
98-132

REDUCTASE SMA

PRIR2_VACCP
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN COPENHAGEN)
98-132

REDUCTASE SMA

PRIR2_VACCV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN L-1VP)
98-132

REDUCTASE SMA

PRIR2_VARV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN WR)
98-132

REDUCTASE SMA

PRL1_HSV2H
RIBONUCLEOSIDE-DIPHOSPHATE
VARIOLA VIRUS
98-132

REDUCTASE SMA

PRP94_VACCV
NEUROVIRULENCE FACTOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
171-212

PRP94_VARV
RNA-POLYMERASE-ASSOCIATED
VACCINIA VIRUS (STRAIN WR), AND
116-150
465-540
757-791

TRANSCRIPTION S
(STRAIN COPENHAGEN

PRPO1_VACCC
RNA-POLYMERASE-ASSOCIATED
VARIOLA VIRUS
41-75
116-150
465-540
757-791

TRANSCRIPTION S

PRPO1_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
243-291
622-656
754-791
954-988
1006-

147 KD POLYPE

1057

PRPO1_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
243-291
622-656
754-791
954-988
1024-

147 KD POLYPE

1058

PRPO2_CAPVK
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
243-291
622-656
754-791
954-988
1006-

147 KD POLYPE

1057

PRPO2_COWPX
DNA-DIRECTED RNA POLYMERASE
CAPRIPOXVIRUS (STRAIN KS-1)
19-60
114-155
589-630

132 KD POLYPE

PRPO2_VACCV
DNA-DIRECTED RNA POLYMERASE
COWPOX VIRUS
211-245
359-400
833-874

132 KD POLYPE

PRPO2_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR),
211-245
359-400
833-874

132 KD POLYPE
AND (STRAIN COPENHAGEN)

PRPO4_VACCC
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
211-245
359-400
833-874

132 KD POLYPE

PRPO4_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
62-116

35 KD POLYPEP

PRPO4_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
62-116

35 KD POLYPEP

PRPO5_VACCC
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
62-116

35 KD POLYPEP

PRPO5_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
1-71

30 KD POLYPEP

PRPO5_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
1-71

30 KD POLYPEP

PRPO6_VACCV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
1-71

30 KD POLYPEP

PRPO6_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR),
25-59

22 KD POLYPEP
AND (STRAIN COPENHAGEN)

PRPO7_VACCV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
25-59

22 KD POLYPEP

PRPO7_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR),
43-93

19 KD POLYPEP
AND (STRAIN COPENHAGEN)

PRPOA_LELV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
43-93

19 KD POLYPEP

PRPOL_EAV
RNA-DIRECTED RNA POLYMERASE
LELYSTAD VIRUS
1533-
1721-
1958-
2109-

1567
1758
1992
2157

PRRP1_IAANN
RNA-DIRECTED RNA POLYMERASE
EQUINE ARTERITIS VIRUS
1083-
1477-
1633-

1117
1518
1673

PRRP1_IABEI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/ANN ARBOR/6/60)

PRRP1_IADUN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313
350-391

SUBUNIT P1
(STRAIN A/BEIJING/11/56)

PRRP1_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/DUNEDIN/4/73)

PRRP1_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/GULL/MARYLAND/704/77)

PRRP1_IAHTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313

SUBUNIT P1
(STRAIN A/EQUINE/LONDON/1416/73)

PRRP1_IAKIE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313

SUBUNIT P1
(STRAIN A/EQUINE/TENNESSEE/5/86)

PRRP1_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/KIEV/59/79)

PRRP1_IALE1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/KOREA/426/68)

PRRP1_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/LENINGRAD/134/57)

PRRP1_IALE3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/LENINGRAD/134/17/57)

PRRP1_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/LENINGRAD/134/47/57)

PRRP1_IAME8
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/MALLARD/NEW YORK/6750/78)

PRRP1_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/MEMPHIS/8/88)

PRRP1_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/NT/60/68)

PRRP1_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313

SUBUNIT P1
(STRAIN A/PUERTO RICO/8/34)

PRRP1_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/SINGAPORE/1/57)

PRRP1_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/TURKEY/MINNESOTA/833/80

PRRP1_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/VICTORIA/3/75)

PRRP1_IAWIS
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313

SUBUNIT P1
(STRAIN A/WILSON-SMITH/33)

PRRP1_IAZH3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313

SUBUNIT P1
(STRAIN A/WISCONSIN/3523/88)

PRRP1_IAZON
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
187-242
279-313

SUBUNIT P1
(STRAIN A/SWINE/HONG KONG/126/82)

PRRP1_IAZTF
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/SWINE/ONTARIO/2/81)

PRRP1_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313

SUBUNIT P1
(STRAIN A/SWINE/TENNESSEE/26/77)

PRRP1_INBAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
208-249

SUBUNIT P1
(STRAIN B/ANN ARBOR/1/66)

PRRP1_INBLE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
208-249

SUBUNIT P1
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE]

PRRP1_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
208-249

SUBUNIT P1
(STRAIN B/LEE/40)

PRRP2_IAANN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS
305-384
648-686
707-752

SUBUNIT P1
(STRAIN C/JJ/50)

PRRP2_IADH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/ANN ARBOR/6/60)

PRRP2_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/DUCK/HOKKAIDO/8/80)

PRRP2_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK

PRRP2_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/GULL/MARYLAND/704/77)

PRRP2_IAHTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/EQUINE/LONDON/1416/73)

PRRP2_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/EQUINE/TENNESSEE/5/86)

PRRP2_IALE1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/KOREA/426/68)

PRRP2_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/LENINGRAD/134/57)

PRRP2_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/LENINGRAD/134/17/57)

PRRP2_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/MALLARD/NEW YORK/6750/78)

PRRP2_IAPI0
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/NT/60/68)

PRRP2_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/PINTAIL/ALBERTA/119/79)

PRRP2_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/PUERTO RICO/8/34)

PRRP2_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/RUDDY TURNSTONE/NEW JERS

PRRP2_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/SINGAPORE/1/57)

PRRP2_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/TURKEY/MINNESOTA/833/80)

PRRP2_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/VICTORIA/3/75)

PRRP2_IAZH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/WILSON-SMITH/33)

PRRP2_IAZH3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/SWINE/HONG KONG/81/78

PRRP2_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/SWINE/HONG KONG/126/82

PRRP2_IAZTF
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/SWINE/IOWA/15/30

PRRP2_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218

SUBUNIT P2
(STRAIN A/SWINE/TENNESSEE/26/77)

PRRP2_INBAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
111-196
349-390

SUBUNIT P2
(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE

PRRP2_INBSI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
111-196
349-390

SUBUNIT P2
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])

PRRP3_IAANN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
111-196
349-383

SUBUNIT P2
(STRAIN B/SINGAPORE/222/79)

PRRP3_IABUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/ANN ARBOR/6/60)

PRRP3_IACHI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
518-567
707-755

SUBUNIT P3
(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)

PRRP3_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/CHILE/1/83)

PRRP3_IAFPW
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK

PRRP3_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/FOWL PLAGUE VIRUS/WEYBRID

PRRP3_IAGUA
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/GULL/MARYLAND/704/77

PRRP3_IAHK6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
7-41
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/GULL/ASTRAKHAN/227/84

PRRP3_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/EQUINE/KENTUCKY/2/860)

PRRP3_IAHPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/EQUINE/LONDON/1416/73)

PRRP3_IAKIE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
721-755

SUBUNIT P3
(STRAIN A/EQUINE/PRAGUE/1/56)

PRRP3_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/KIEV/59/79)

PRRP3_IALEI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/KOREA/426/68)

PRRP3_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/LENINGRAD/134/57)

PRRP3_IALE3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/LENINGRAD/134/17/57)

PRRP3_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/LENINGRAD/134/47/57)

PRRP3_IAME8
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/MALLARD/NEW YORK/6750/78)

PRRP3_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
7-41
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/MEMPHIS/8/88)

PRRP3_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/NT/60/68)

PRRP3_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/PUERTO RICO/8/34)

PRRP3_IASE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/RUDDY TURNSTONE/NEW JERSE

PRRP3_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/SEAL/MASSACHUSETTS/133/82)

PRRP3_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/SINGAPORE/1/57)

PRRP3_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/TURKEY/MINNESOTA/833/80)

PRRP3_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/VICTORIA/3/75)

PRRP3_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/WILSON-SMITH/33

PRRP3_IAZTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
1-42
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/SWINE/IOWA/15/30)

PRRP3_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
7-41
363-402
473-514
707-755

SUBUNIT P3
(STRAIN A/SWINE/TENNESSEE/24/77

PRRP3_INBAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
458-533

SUBUNIT P3
(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE

PRRP3_INCBE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
458-533

SUBUNIT P3
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])

PRRP3_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS
235-269
275-309

SUBUNIT P3
(STRAIN C/BERLIN/1/85)

PRRP3_THOGV
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS
235-269
275-316

SUBUNIT P3
(STRAIN C/JJ/50)

PRRPA_CVH22
RNA-DIRECTED RNA POLYMERASE
THOGOTO VIRUS
343-401

SUBUNIT P3

PRRPA_CVMJH
RNA-DIRECTED RNA POLYMERASE
HUMAN CORONAVIRUS (STRAIN 229E)
358-392
495-571
1742-
1971-
3664-
3912-

1776
2008
3724
3946

PRRPB_BEV
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
617-651
1364-
2769-
3586-
3821-
4075-
4319-

1398
2803
3620
3855
4121
4353

PRRPB_CVMA5
RNA-DIRECTED RNA POLYMERASE
BERNE VIRUS
20-64
617-651
943-

1009

PRRPB_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN A59)
1129-
1303-
1453-
1692-
2629-

1170
1337
1494
1726
2670

PRRPB_IBVB
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
1129-
1303-
1453-
1690-
2627-

1170
1337
1494
1724
2668

PRRPB_IBVK
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS
499-550
650-695
1460-
1509-
2246-

(STRAIN BEAUDETTE)

1494
1548
2287

PRRPL_BTV10
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS
115-156

(STRAIN KB8523)

PRRPL_BUNYW
RNA-DIRECTED RNA POLYMERASE
BLUETONGUE VIRUS
308-342
705-748
825-903
1021-
1114-

(SEROTYPE 10/ISOLATE USA)

1076
1201

PRRPL_CDVO
RNA POLYMERASE
BUNYAMWERA VIRUS
2-36
80-114
308-363
371-412
1704-
1802-
1889-

1741
1861
1935

PRRPL_HANTV
RNA POLYMERASE BETA SUBUNIT
CANINE DISTEMPER VIRUS
20-54

(STRAIN ONDERSTEPOORT)

PRRPL_HRSVA
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118)
98-139
174-208
372-431
557-591
655-696
731-783
905-949
1276-

1310

1419-
1742-
1993-

1453
1776
2027

PRRPL_MABVM
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
87-188
827-861
1131-
1185-
1465-

(STRAIN A2

1179
1220
1517

PRRPL_MABVP
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN MUSOKE)
597-631
1046-
1490-
1804-
2029-
2194-

1092
1552
1838
2063
2266

PRRPL_MEASE
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN POPP)
597-631
1046-
1490-

1092
1552

PRRPL_MUMPM
RNA POLYMERASE BETA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
197-231
790-824
869-903
1064-
1283-
2121-

1109
1317
2155

PRRPL_NDVB
RNA POLYMERASE BETA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
164-214
220-254
267-304
576-627
752-807
1231-
1447-
1487-

1286
1481
1531

1566-
2191-

1600
2225

PRRPL_PI2HT
RNA POLYMERASE BETA SUBUNIT
NEWCASTLE DISEASE VIRUS
167-208
230-295
1969-
2043-
2108-

(STRAIN BEAUDETTE C/45)

2013
2077
2142

PRRPL_PI3H4
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
136-170
575-628
750-785
1226-
1316-
1417-
1564-
1687-

(STRAIN TOSHIBA)

1284
1357
1479
1630
1721

1901-

1955

PRRPL_PUUMH
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS
48-91
107-163
540-574
747-781
1064-
1293-
1499-
1994-

(STRAIN NIH 47885)

1129
1356
1536
2036

PRRPL_RABVP
RNA-DIRECTED RNA POLYMERASE
PUUMALA VIRUS (STRAIN HALLNAS B1)
98-132
381-415
444-488
557-591
655-696
731-783
922-976
1119-

1153

1742-
1940-
1993-

1776
1975
2032

PRRPL_RABVS
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN PV)
73-114
197-231
696-730
1174-
1522-
1584-
2068-

1222
1580
1618
2123

PRRPL_RDV
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
73-114
197-231
696-730
749-783
1174-
1522-
1584-

1222
1580
2123

PRRPL_RVFVZ
RNA-DIRECTED RNA POLYMERASE
RICE DWARF VIRUS
17-61
534-575
844-878
918-985
1037-

1071

PRRPL_SEND5
RNA-DIRECTED RNA POLYMERASE
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12)
398-439
641-678
832-887
1081-
1653-
1819-

1115
1687
1870

PRRPL_SENDE
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
309-343
540-600
612-656
747-781
1064-
1239-
1499-
2000-

1119
1280
1536
2034

2146-

2216

PRRPL_SENDZ
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN ENDERS)
129-163
360-420
432-476
567-601
884-939
1059-
1319-
1820-

1100
1356
1854

1966-

2036

PRRPL_SEOU8
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z)
309-343
540-600
612-656
747-781
1064-
1239-
1499-
2000-

1119
1280
1536
2034

2146-

2216

PRRPL_SV5WR
RNA-DIRECTED RNA POLYMERASE
SEOUL VIRUS (STRAIN 80-39)
98-139
174-208
557-591
655-696
731-765
1742-
1947-
1993-

1776
1981
2027

PRRPL_SYNV
RNA POLYMERASE BETA SUBUNIT
SIMIAN VIRUS 5 (STRAIN 21004-WR)
547-627
747-781
1225-
1319-
1592-
1676-
2024-

1280
1353
1626
1715
2058

PRRPL_TSWVB
RNA POLYMERASE BETA SUBUNIT
SONCHUS YELLOW NET VIRUS
760-794
825-859
977-
1089-
1978-
2059-

1014
1137
2032
2107

PRRPL_UUK
RNA-DIRECTED RNA POLYMERASE
TOMATO SPOTTED WILT VIRUS
46-101
399-433
539-573
589-634
1119-
1195-
1321-
1538-

(BRAZILIAN ISOLATE CPNH1/BR

1153
1236
1379
1572

1684-
1857-
2073-
2156-
2206-
2315-
2378-
2809-

1725
1898
2127
2200
2247
2368
2419
2843

PRRPL_VSVJH
RNA POLYMERASE
UUKUNIEMI VIRUS
127-183
282-323
836-874
1030-
1481-
2015-
2061-

1071
1515
2049
2098

PRRPL_VSVJO
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
319-358
674-715
720-763
1522-
1802-

(SEROTYPE NEW JERSEY/STRA

1567
1836

PRRPL_VSVSJ
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
319-358
674-715
720-763
1802-

(SEROTYPE NEW JERSEY/STRA

1836

PRRPO_ACLSV
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
674-715
720-763
1019-
1742-
2066-

(STRAIN SAN JUAN)

1074
1799
2107

PRRPO_BWYVF
RNA-DIRECTED RNA POLYMERASE
APPLE CHLOROTIC LEAF SPOT VIRUS
228-262
557-596
916-950
1235-

1269

PRRPO_BYDV1
PUTATIVE RNA-DIRECTED RNA
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
304-341

POLYMERASE

PRRPO_BYDVP
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS
234-285

POLYMERASE
(ISOLATE MAV-PS1)

PRRPO_BYDVR
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS
234-285

POLYMERASE
(ISOLATE PAV)

PRRPO_CARMV
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS
234-285

POLYMERASE
(ISOLATE P-PAV)

PRRPO_CGMVS
PROBABLE RNA-DIRECTED RNA
CARNATION MOTTLE VIRUS
93-131

POLYMERASE

PRRPO_IBDV5
PUTATIVE RNA-DIRECTED RNA
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
7-41
387-428
446-480
726-767
1445-

POLYMERASE
(WATERMELON STR

1479

PRRPO_IBDVA
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE
384-432
446-484

POLYMERASE
VIRUS (STRAIN 52/70)

PRRPO_IPNVJ
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE
144-185
266-307
709-757
771-809

POLYMERASE
VIRUS (STRAIN AUSTRALI

PRRPO_IPNVS
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS
147-181
268-407
501-535
750-802

POLYMERASE
(SEROTYPE JASPER)

PRRPO_LYCVA
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS
147-181
366-407
501-535
753-802

POLYMERASE
(SEROTYPE SP)

PRRPO_LYCVW
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
301-346
805-886
926-960
1509-
2090-

(STRAIN ARMSTRON

1543
2124

PRRPO_MCMV
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
301-345

(STRAIN WE)

PRRPO_PEAMV
PROBABLE RNA-DIRECTED RNA
MAIZE CHLOROTIC MOTTLE VIRUS
181-215
697-731

POLYMERASE

PRRPO_PLRV1
RNA-DIRECTED RNA POLYMERASE
PEA ENATION MOSAIC VIRUS
321-358

PRRPO_PLRVW
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS (STRAIN 1)
336-373
423-457

POLYMERASE

PRRPO_PPMVS
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS
336-373
423-457

POLYMERASE
(STRAIN WAGENINGEN)

PRRPO_RCNMV
PUTATIVE RNA-DIRECTED RNA
PEPPER MILD MOTTLE VIRUS
321-362
402-454
627-661
862-896

POLYMERASE
(STRAIN SPAIN

PRRPO_REOVD
PUTATIVE RNA-DIRECTED RNA
REC CLOVER NECROTIC MOSAIC VIRUS
666-700

POLYMERASE

PRRPO_REOVJ
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 3/STRAIN DEARING)
310-361

PRRPO_REOVL
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 2/STRAIN D5/JONES)
310-344

PRRPO_ROTBR
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 1/STRAIN LANG)
310-361

PRRPO_ROTBU
RNA-DIRECTED RNA POLYMERASE
BOVINE ROTAVIRUS (STRAIN RF)
60-96
133-167
204-245
535-569
579-631
639-686
690-724
771-805

SUBUNIT VP1

PRRPO_ROTPC
RNA-DIRECTED RNA POLYMERASE
BOVINE ROTAVIRUS (STRAIN UK)
60-96
133-167
204-245
535-569
579-631
639-686
690-724
771-805

SUBUNIT VP1

PRRPO_ROTPG
RNA-DIRECTED RNA POLYMERASE
PORCINE ROTAVIRUS
3-44
255-299
335-397
476-510
518-620
966-

SUBUNIT VP1
(GROUP C/STRAIN COWDEN)

1007

PRRPO_ROTS1
RNA-DIRECTED RNA POLYMERASE
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
62-96
133-167
336-377
581-631
636-686
690-724
771-842

SUBUNIT VP1

PRRPO_SBMV
RNA-DIRECTED RNA POLYMERASE
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
60-96
133-167
535-569
579-631
639-686
690-724
771-805

SUBUNIT VP1

PRRPO_SCVLA
PROBABLE RNA-DIRECTED RNA
SOUTHERN BEAN MOSAIC VIRUS
628-665

POLYMERASE

PRRPO_TACV
RNA-DIRECTED RNA POLYMERASE
SACCHAROMYCES CEREVISIAE VIRUS L-A
100-134
147-191

PRRPO_TMGMV
RNA POLYMERASE
TACARIBE VIRUS
155-204
220-278
375-416
484-518
891-925
1030-
1285-
1981-

1081
1319
2015

PRRPO_TMV
PUTATIVE RNA-DIRECTED RNA
TOBACCO MILD GREEN MOSAIC VIRUS
401-449
682-720
765-818

POLYMERASE
(TMV STRAIN U2)

PRRPO_TMVKR
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (VULGARE)
3-37
401-453
665-699

POLYMERASE

PRRPO_TMVTO
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN KOREAN)
3-37
401-453
665-699

POLYMERASE

PRRPO_TNVD
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
3-37
401-453
860-894

POLYMERASE

PRRPP_BRSVA
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN D)
102-144

PRRPP_CDVO
RNA POLYMERASE ALPHA SUBUNIT
BOVINE RESPIRATORY SYNCYTIAL VIRUS
99-158
160-216

(STRAIN A51908)

PRRPP_HRSV
RNA POLYMERASE ALPHA SUBUNIT
CANINE DISTEMPER VIRUS
312-373

(STRAIN ONDERSTEPOORT)

PRRPP_HRSV1
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-158
160-216

PRRPP_HRSVA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-158
160-216

(SUBGROUP B/STRAI

PRRPP_HRSVL
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-158
160-216

(STRAIN A2)

PRRPP_MEASE
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-158
160-216

(SUBGROUP A/STRAI

PRRPP_MEASI
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
315-374
460-495

PRRPP_MEASY
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN IP-3-CA)
315-374
460-495

PRRPP_MUMP1
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN YAMAGATA-1)
315-374
460-495

PRRPP_MUMPE
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN SBL-1)
149-183
213-275

PRRPP_MUMPM
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN ENDERS)
214-276

PRRPP_NDVA
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
214-276

PRRPP_NDVB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS
100-134

(STRAIN AUSTRALIA-VICTORIA/32)

PRRPP_PI1HB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS
100-138

(STRAIN BEAUDETTE C/45)

PRRPP_PI1HC
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
80-114
313-364
375-437

(STRAIN C35)

PRRPP_PI1HD
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
80-114
313-364
375-437

(STRAIN C39)

PRRPP_PI1HE
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
80-114
313-364
375-437

(STRAIN CI-5/73)

PRRPP_PI2H
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
66-114
237-271
313-364
375-437

(STRAIN CI-14/830)

PRRPP_PI2HT
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
218-281

PRRPP_PI3B
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
218-281

(STRAIN TOSHIBA)

PRRPP_PI3H4
RNA POLYMERASE ALPHA SUBUNIT
BOVINE PARAINFLUENZA 3 VIRUS
31-130
414-470

PRRPP_PI4HA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS
410-499

(STRAIN NIH 47885)

PRRPP_PI4HB
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4A VIRUS
4-38
222-285

(STRAIN TOSHIBA)

PRRPP_PIRYV
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4B VIRUS
222-285

(STRAIN 68-333)

PRRPP_RABVA
RNA POLYMERASE ALPHA SUBUNIT
PIRY VIRUS
137-174

PRRPP_RABVC
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN AVO1)
93-127

PRRPP_RABVE
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN CVS-11)
93-127

PRRPP_RABVP
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN ERA), AND (STRAIN PM)
93-127

PRRPP_RABVS
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN PV)
93-127

PRRPP_SEND5
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN SAD B19
93-127

PRRPP_SEND6
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
313-364
375-447

PRRPP_SENDF
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN 6/94)
323-364
375-447

PRRPP_SENDH
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN FUSHIMI)
313-364
375-447

PRRPP_SENDZ
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN HARRIS)
313-364
375-447

PRRPP_SV5
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z)
313-364
375-447

PRRPP_SYNV
RNA POLYMERASE ALPHA SUBUNIT
SIMIAN VIRUS 5 (STRAIN W3)
205-278

PRRPP_VSVIG
RNA POLYMERASE ALPHA SUBUNIT
SONCHUS YELLOW NET VIRUS
138-173
233-281

PRRPP_VSVIM
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
3-43

(SEROTYPE INDIANA/STRAIN G

PRRPP_VSVJM
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
3-43

(SEROTYPE INDIANA/STRAIN M

PRRPP_VSVJO
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
3-37

(SEROTYPE NEW JERSEY/STRA

PRRPP_VSVSJ
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
3-37

(SEROTYPE NEW JERSEY/STRA

PSPHR_AMEPV
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
3-43

(STRAIN SAN JUAN)

PSP12_VACCV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS
223-264
361-395

PSP12_VARV
SERINE PROTEINASE INHIBITOR
VACCINIA VIRUS (STRAIN WR)
21-86

PSP13_VACCC
SERINE PROTEINASE INHIBITOR 2
VARIOLA VIRUS
21-86

PSP13_VACCV
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN COPENHAGEN)
118-167
225-266

PSP13_VARV
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN WR)
118-167
225-266

PSPIA_VACCC
SERINE PROTEINASE INHIBITOR 3
VARIOLA VIRUS
122-171
229-270

PT2C2_CHVP1
SERINE PROTEINASE INHIBITOR 2
VACCINIA VIRUS (STRAIN COPENHAGEN)
11-65

HOMOLOG FIRST

PTAA2_VACCV
TYPE II RESTRICTION ENZYME CVIAII
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
48-85

PTAG8_FOWPV
TRANS-ACTIVATOR PROTEIN A2
VACCINIA VIRUS (STRAIN WR, COPENHAGEN,
95-133
173-207

AND VARIOLA VI

PTAG8_VACCV
TRANS-ACTIVATOR PROTEIN FP0
FOWLPOX VIRUS
3-51

PTAG8_VARV
TRANS-ACTIVATOR PROTEIN GK1
VACCINIA VIRUS (STRAIN WR),
3-51

(STRAIN COPENHAGEN)

PTALA_BFDV
TRANS-ACTIVATOR PROTEIN GK1
VARIOLA VIRUS
3-51

PTALA_POVBO
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING DISEASE VIRUS
291-325
464-498

PTALA_POVHA
LARGE T ANTIGEN
BOVINE POLYOMAVIRUS
303-337
495-537

PTALA_POVJC
LARGE T ANTIGEN
HAMSTER POLYOMAVIRUS
464-501
587-621

PTALA_POVLY
LARGE T ANTIGEN
POLYOMAVIRUS JC
153-187
589-623

PTALA_POVM3
LARGE T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
3-41
206-258
437-478

PTALA_POVMA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
509-544

PTALA_POVMC
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
507-542

PTAMI_POVHA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS
504-539

(STRAIN CRAWFORD SMALL-PLAQUE)

PTAMI_POVM3
MIDDLE T ANTIGEN
HAMSTER POLYOMAVIRUS
339-378

PTAMI_POVMA
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
211-245
388-422

PTAMI_POVMC
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
192-226
369-403

PTASM_POVBO
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS
192-226
369-403

(STRAIN CRAWFORD SMALL-PLAQUE)

PTASM_POVLY
SMALL T ANTIGEN
BOVINE POLYOMAVIRUS
41-85

PTATR_NPVAC
SMALL T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
3-41

PTATR_NPVBM
TRANS-ACTIVATING TRANSCRIPTIONAL
AUTOGRAPHA CALIFORNICA NUCLEAR
408-442
46-480
489-523

REGULAT
POLYHEDROSIS VIRUS

PTATR_NPVOP
TRANS-ACTIVATING TRANSCRIPTIONAL
BOMBYX MORI NUCLEAR POLYHEDROSIS
413-447
451-485
494-528

REGULAT
VIRUS

PTAT_SIVA1
TRANS-ACTIVATING TRANSCRIPTIONAL
ORGYIA PSEUDOTSUGATA MULTICAPSID
391-455
511-554

REGULAT
POLYHEDROSIS VIRUS

PTAT_SIVAI
TAT PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
73-109

(AGM155 ISOLATE)

PTAT_VILV
TAT PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
137-185

(ISOLATE AGM/CLONE GR1

PTAT_VILV1
TRANS-ACTIVATING TRANSCRIPTIONAL
VISNA LENTIVIRUS (STRAIN 1514)
28-74

REGULAT

PTAT_VILV2
TRANS-ACTIVATING TRANSCRIPTIONAL
VISNA LENTIVIRUS
40-74

REGULAT
(STRAIN 1514/CLONE LV1-1KS1)

PTCB_FLV
TRANS-ACTIVATING TRANSCRIPTIONAL
VISNA LENTIVIRUS
40-74

REGULAT
(STRAIN 1514/CLONE LV1-1KS2)

PTEGP_HSV11
T-CELL RECEPTOR BETA CHAIN PRECURSOR
FELINE LEUKEMIA VIRUS
279-321

PTEGP_HSVEA
TEGUMENT PHOSPHOPROTEIN US9
HERPES SIMPLEX VIRUS
27-61

(TYPE 1/STRAIN 17)

PTEGP_HSVEB
NONSENSE

PTEGP_HSVEK
NONSENSE

PTEGP_HSVSB
NONSENSE

PTEGU_EBV
NONSENSE

PTEGU_HCMVA
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
768-802
821-855
938-972
1101-
1208-
1479-
1700-
1809-

1138
1242
1516
1753
1867

1870-
1920-
3108-

1916
1954
3149

PTEGU_HSV11
PROBABLE LARGE TEGUMENT PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-71
215-249
543-581
700-738
868-909
936-977
1004-
1163-

1038
1200

1237-
2200-

1296
2235

PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
731-765
801-842
1022-
1223-
1275-
1315-
1520-
1609-

(TYPE 1/STRAIN 17)

1059
1269
1309
1370
1531
1669

1673-
1749-
1820-
2670-

1714
1783
1854
2704

PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
30-71
224-262
567-608
712-757
951-
1091-
1192-
1357-

(TYPE 6/STRAIN GS)

1000
1181
1233
1400

PTEGU_HSVSA
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1
560-597
635-683
794-848
908-956
1108-
1155-
1399-
1487-

(STRAIN AB4P)

1151
1246
1458
1549

1619-
1661-
1702-
1806-
1947-

1657
1695
1736
1843
1981

PTEGU_VZVD
PROBABLE LARGE TEGUMENT PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
520-558
560-598
615-652
672-710
777-822
846-898
948-986
1287-

1332

1434-

1502

PTERM_ADE02
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
657-696
713-747
804-841
933-972
1117-
1415-
1528-
1572-

1158
1471
1562
1620

1633-
1719-
1945-
2727-

1705
1756
1986
2761

PTERM_ADE05
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 2
490-572

PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 5
490-592

PTERM_ADE12
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
491-559

PTJUN_AVIS1
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 12
443-491
497-538

PTMAF_AVIS4
TRANSFORMING PROTEIN JUN
AVIAN SARCOMA VIRUS (STRAIN 17)
210-284

PTOP1_SFVKA
TRANSFORMING PROTEIN MAF
AVIAN MUSCULOAPONEUROTIC
247-288
295-340

FIBROSARCOMA VIRUS AS42

PTOP2_ASFB7
DNA TOPOISOMERASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
127-183
269-310

PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
146-180
481-515
601-642
945-979
1038-
1123-

1093
1162

PTSIS_SMSAV
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS
146-180
480-514
600-641
902-936
944-978
1038-
1122-

(ISOLATE MALAWI LIL 20/1)

1091
1161

PTYSY_VZVD
PDGF-RELATED TRANSFORMING
SIMIAN SARCOMA VIRUS
16-71

PROTEIN P28-SIS

PUBIL_NPVOP
THYMIDYLATE SYNTHASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
215-260

PUL01_HCMVA
UBIQUITIN-LIKE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
43-80

POLYHEDROSIS VIRUS

PUL03_HSV11
HYPOTHETICAL PROTEIN UL1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
169-203

PUL03_HSV2H
PROTEIN UL3
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
94-128

PUL03_HSVEB
PROTEIN UL3
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
92-126

PUL04_HSV11
GENE 60 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
70-104

PUL06_EBV
PROTEIN UL4
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
102-136

PUL06_HCMVA
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
104-145
313-347
376-410

PUL06_HSV11
HYPOTHETICAL PROTEIN UL6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
216-250

PUL06_HSVEB
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
36-94
103-141
294-329
337-371
416-479

PUL06_HSVSA
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
62-170
357-413
448-503

PUL06_VZVD
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
90-140
151-194
302-336
364-405

PUL08_HCMVA
VIRION GENE 54 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
87-131
350-409
704-738

PUL09_HSVEB
HYPOTHETICAL PROTEIN UL8
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
6-50

PUL09_VZVD
ORIGIN OF REPLICATION BINDING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
174-208

PUL11_HCMVA
ORIGIN OF REPLICATION BINDING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
122-163

PUL13_HCMVA
NONSENSE

PUL14_HCMVA
HYPOTHETICAL PROTEIN UL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
47-81
185-227

PUL14_HSVEB
HYPOTHETICAL PROTEIN UL14
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
305-343

PUL14_PRVN3
HYPOTHETICAL GENE 48 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
52-96
246-283

PUL14_VZVD
UL14 PROTEIN HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3)
43-95

PUL16_HSVEB
HYPOTHETICAL GENE 46 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
61-103

PUL17_HSV6U
GENE 46 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
266-300

PUL21_HSVEB
PROTEIN 10R
HERPES SIMPLEX VIRUS
239-280

(TYPE 6/STRAIN UGANDA-1102)

PUL23_HCMVA
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
44-78
421-474

PUL24_HCMVA
HYPOTHETICAL PROTEIN UL23
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
213-253

PUL24_ILTVT
HYPOTHETICAL PROTEIN UL24
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
5-39

PUL25_HCMVA
PROTEIN UL24 HOMOLOG
INFECTIOUS LARYNGOTRACHEITIS VIRUS
161-195

(STRAIN THORNE V88

PUL25_HSV11
HYPOTHETICAL PROTEIN UL25
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
255-341
351-399

PUL25_HSVEB
VIRION PROTEIN UL25
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
370-411

PUL25_HSVSA
VIRION PROTEIN UL25
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
364-413

PUL25_ILTVT
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
29-92
183-231
365-406

PUL25_VZVD
64.1 KD VIRION PROTEIN
INFECTIOUS LARYNGOTRACHEITIS VIRUS
38-84
165-206

(STRAIN THORNE V88

PUL31_HCMVA
VIRION GENE 34 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
340-388

PUL31_HSVEB
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
244-285

PUL31_VZVD
GENE 29 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
153-187

PUL32_HSVEB
GENE 27 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
163-197

PUL32_VZVD
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPESVIRUS TYPE 1
342-376

(STRAIN AB4P) (STRAIN AB1)

PUL33_HCMVA
PROBABLE MAJOR ENVELOPE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
72-106
296-344

GLYCOPROTEIN 26

PUL33_VZVD
G-PROTEIN COUPLED RECEPTOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
94-135
309-352

HOMOLOG UL33

PUL34_EBV
GENE 25 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
29-63

PUL34_HCMVA
BFRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
159-200

PUL34_HSV11
HYPOTHETICAL PROTEIN UL34
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
113-147

PUL35_HCMVA
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
187-221

PUL37_EBV
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
231-268

PUL37_HSV11
PROTEIN BOLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
708-742

PUL37_HSVEB
PROTEIN UL37
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
853-891

PUL37_HSVSA
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
82-137
311-345
614-648
715-750
781-822

PUL37_VZVD
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
6-65
682-741

PUL38_HCMVA
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
719-753
786-827

PUL41_VZVD
HYPOTHETICAL PROTEIN UL38
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
10-51

PUL42_HSV11
HOST SHUTOFF VIRION PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
330-366

PUL42_HSVEB
DNA-BINDING PROTEIN UL42
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
134-168
221-263

PUL43_HCMVA
DNA-BINDING GENE 18 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
138-172

PUL43_HSVE4
HYPOTHETICAL PROTEIN UL43
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
72-109

PUL43_VZVD
MEMBRANE PROTEIN UL43 HOMOLOG
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
27-68

PUL45_HSV1K
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
312-363

PUL45_HSV1M
PROTEIN UL45
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
96-137

PUL47_HCMVA
PROTEIN UL45
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN MP)
96-137

PUL47_HSV11
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
114-165
448-485
745-856

PUL47_HSV1F
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
473-518

PUL47_HSVBP
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F
473-518

PUL47_HSVE4
80.7 KD ALPHA TRANS-INDUCING PROTEIN
BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2)
561-612

PUL47_HSVEB
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
183-246
582-620
825-866

PUL47_VZVD
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
219-253
371-412
817-866

PUL50_HCMVA
ALPHA TRANS-INDUCING FACTOR 91.8 KD
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
84-135
156-209
664-701

PROTEIN

PUL51_HSV11
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
155-189

PUL51_HSVE4
PROTEIN UL51
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
118-169

PUL51_HSVEB
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
121-162

PUL51_VZVD
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
120-161

PUL52_EBV
GENE 7 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
122-163

PUL52_HSV11
PROBABLE DNA REPLICATION
EPSTEIN-BARR VIRUS (STRAIN B95-8)
188-255

PROTEIN BSLF1

PUL52_HSVEB
DNA REPLICATION PROTEIN UL52
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
189-223

PUL52_HSVSA
DNA REPLICATION PROTEIN UL52
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
141-182
929-970

PUL52_VZVD
PROBABLE DNA REPLICATION GENE 56
HERPESVIRUS SAIMIRI (STRAIN 11)
445-483

PROTEIN

PUL53_HCMVA
PROBABLE DNA REPLICATION GENE 6
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
301-342

PROTEIN

PUL55_HSV2H
PROTEIN UL53
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
12-48

PUL64_HCMVA
PROTEIN UL55
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
151-185

PUL70_HCMVA
HYPOTHETICAL PROTEIN UL64
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
32-73

PUL74_HCMVA
PROBABLE DNA REPLICATION PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
39-99

UL70

PUL87_HSV6U
HYPOTHETICAL PROTEIN UL74
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
43-79

PUL87_HSVSA
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS
729-770

(TYPE 6/STRAIN UGANDA-1102)

PUL88_HCMVA
HYPOTHETICAL GENE 24 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
366-400
582-616

PUL91_HSVSA
HYPOTHETICAL PROTEIN UL88
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
357-391

PUL92_EBV
HYPOTHETICAL GENE 30 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
24-58

PUL92_HCMVA
HYPOTHETICAL PROTEIN BDLF4
EPSTEIN-BARR VIRUS (STRAIN B95-8)
107-144
188-222

PUL92_HSV6U
HYPOTHETICAL PROTEIN UL92
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
79-116

PUL92_HSVSA
HYPOTHETICAL PROTEIN 9R
HERPES SIMPLEX VIRUS
101-145
174-216

(TYPE 6/STRAIN UGANDA-1102)

PUL93_HCMVA
HYPOTHETICAL GENE 31 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
88-122

PUL95_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
23-57
299-384

PUL95_HSV6U
HYPOTHETICAL PROTEIN UL95
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-71
259-293

PUL96_HCMVA
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS
73-151
233-270

(TYPE 6/STRAIN UGANDA-1102)

PUL96_HSV6U
HYPOTHETICAL PROTEIN UL96
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
51-103

PUL96_HSVSA
HYPOTHETICAL PROTEIN 14R
HERPES SIMPLEX VIRUS
53-113

(TYPE 6/STRAIN UGANDA-1102)

PULA2_HCMVA
HYPOTHETICAL GENE 35 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
45-100

PULA4_HCMVA
HYPOTHETICAL PROTEIN UL102
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
6-40
758-792

PULD0_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
1-56
130-171
330-364
439-492
541-575

PUNG_HSV11
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
84-125

PUNG_HSV23
URACIL-DNA GLYCOSYLASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
227-268

PUNG_HSV2H
URACIL-DNA GLYCOSYLASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
188-229

PUNG_HSVSA
URACIL-DNA GLYCOSYLASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52
148-189

PUNG_SFVKA
URACIL-DNA GLYCOSYLASE
HERPESVIRUS SAIMIRI (STRAIN 11)
135-176

PUS02_HSVEB
URACIL-DNA GLYCOSYLASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
81-115

PUS02_HSVEK
GENE 68 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
79-120

PUS07_HCMVA
US1 PROTEIN
EQUINE HERPESVIRUS TYPE 1
86-120

(STRAIN KENTUCKY A)

PUS11_HCMVA
HYPOTHETICAL PROTEIN HXLF5

2-36

PUS14_HCMVA
HYPOTHETICAL PROTEIN HXLF1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)

PUS18_HCMVA
HYPOTHETICAL PROTEIN HVLF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
3-51

PUS23_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
187-225

PUS24_HCMVA
HYPOTHETICAL PROTEIN HHLF7
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
294-335
535-578

PUS26_HCMVA
HYPOTHETICAL PROTEIN HHLF6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
135-172

PUS27_HCMVA
HYPOTHETICAL PROTEIN HHLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
535-584

PUS30_HCMVA
G-PROTEIN COUPLED RECEPTOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
6-40

HOMOLOG US27

PV125_AMVLE
HYPOTHETICAL PROTEIN HHRF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
135-169
274-312

PV143_NPVAC
125 KD PROTEIN
ALFALFA MOSAIC VIRUS
18-52
326-367
591-649

(STRAIN 425/ISOLATE LEIDEN

PV16K_TRVPS
HELICASE
AUTOGRAPHA CALIFORNICA NUCLEAR
313-350
1114-
1179-

POLYHEDROSIS VIRUS

1150
1213

PV16K_TRVSY
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PSG)
75-117

PV1A_BBMV
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN SYM)
75-117

PV1A_BMV
1A PROTEIN
BROAD BEAN MOTTLE VIRUS
21-55
349-405
492-526
710-751
837-884
890-924

PV1A_CCMV
1A PROTEIN
BROME MOSAIC VIRUS
4-66
348-411

PV1A_CMVFN
1A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
4-53
242-276
348-389
487-526

PV1A_CMVO
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
11-66
393-434
584-619
868-916

PV1A_CMVQ
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
11-66
393-434
584-619
868-916

PV1A_PSVJ
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
11-66
393-434

PV1A_TAV
1A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
4-66

PV23K_HSVTH
1A PROTEIN
TOMATO ASPERMY VIRUS
11-59
392-433
857-923

PV24K_BDV
23.5 KD PROTEIN
TURKEY HERPESVIRUS (STRAIN H2)
177-211

PV25K_NPVAC
24 KD ANTIGEN
BORNA DISEASE VIRUS
63-121
130-171

PV28K_PLRV1
25 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
4-50

POLYHEDROSIS VIRUS

PV28K_PLRVW
28 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
116-150

PV290_ASFL5
28 KD PROTEIN
POTATO LEAFROLL VIRUS
116-150

(STRAIN WAGENINGEN)

PV29K_PEBV
LIS 290 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN LIS57)
138-183

PV29K_TRVSY
29.6 KD PROTEIN
EARLY BROWNING VIRUS
115-192

PV29K_TRVTC
29 KD PROTEIN
TOBACCO RATTLE VIRUS
167-201

(STRAIN SYM), AND (STRAIN PSG)

PV2A_CCMV
29 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
45-79

PV2A_CMVFN
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
768-806

PV2A_PSVJ
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
386-420

PV2A_TAV
2A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
717-751

PV30K_TRVTC
2A PROTEIN
TOMATO ASPERMY VIRUS
722-756

PV360_ASFB7
29.1 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
105-218

PV362_ASFB7
K′360 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
53-87
151-192

PV363_ASFB7
K′362 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
54-102
161-212
290-324

PV3A_BMV
D′363 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
153-199

PV3A_CMVFN
3A PROTEIN
BROME MOSAIC VIRUS
11-45

PV3A_CMVM
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
215-255

PV3A_CMVO
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN M)
215-255

PV3A_CMVY
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
215-255

PV51K_ACLSV
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Y)
215-255

PV51K_BWYVF
50.8 KD PROTEIN
APPLE CHLOROTIC LEAF SPOT VIRUS
72-106

PV51K_BWYVG
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
113-147
196-233
404-451

PV56K_PLRV1
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE GB1)
113-147
196-233
407-451

PV56K_PLRVW
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
47-81
438-472

PV58K_BSMV
56 KD PROTEIN
POTATO LEAFROLL VIRUS
47-81
438-475

(STRAIN WAGENINGEN)

PV66K_BWYVF
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
128-162
323-371

PV70K_PLRV1
66.2 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
480-521

PV70K_PLRVW
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
98-144
514-548

PV90K_AMVLE
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS
98-144
409-443
514-548

(STRAIN WAGENINGEN)

PVA04_VACCC
90 KD PROTEIN
ALFALFA MOSAIC VIRUS
107-141

(STRAIN 425/ISOLATE LEIDEN)

PVA04_VACCV
PROTEIN A4
VACCINIA VIRUS (STRAIN COPENHAGEN)
32-66
231-275

PVA04_VARV
PROTEIN A4
VACCINIA VIRUS (STRAIN WR)
32-66
231-275

PVA06_VACCC
PROTEIN A4
VARIOLA VIRUS
22-66
210-265

PVA06_VACCV
PROTEIN A6
VACCINIA VIRUS (STRAIN COPENHAGEN)
97-213
314-355

PVA06_VARV
PROTEIN A6
VACCINIA VIRUS (STRAIN WR)
96-212
313-354

PVA08_VACCC
PROTEIN A6
VARIOLA VIRUS
97-213
313-358

PVA08_VARV
PROTEIN A8
VACCINIA VIRUS (STRAIN COPENHAGEN)
176-236

PVA09_VACCC
PROTEIN A8
VARIOLA VIRUS
176-236

PVA09_VARV
PROTEIN A9
VACCINIA VIRUS (STRAIN COPENHAGEN)
46-81

PVA11_VACCC
PROTEIN A9
VARIOLA VIRUS
46-95

PVA11_VARV
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
97-134
141-175
219-283

PVA12_VACCC
PROTEIN A11
VARIOLA VIRUS
98-176
220-284

PVA12_VARV
PROTEIN A12
VACCINIA VIRUS (STRAIN COPENHAGEN)
114-148

PVA18_VACCC
PROTEIN A12
VARIOLA VIRUS
111-152

PVA18_VACCV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN
433-467

PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN WR)
307-341
433-467

PVA20_VACCC
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
307-341
433-467

PVA20_VARV
PROTEIN A20
VACCINIA VIRUS (STRAIN COPENHAGEN)
1-67

PVA22_VACCC
PROTEIN A20
VARIOLA VIRUS
1-67

PVA22_VARV
PROTEIN A22
VACCINIA VIRUS (STRAIN COPENHAGEN)
28-69

PVA23_VACCC
PROTEIN A22
VARIOLA VIRUS
39-80

PVA23_VARV
PROTEIN A23
VACCINIA VIRUS (STRAIN COPENHAGEN)
95-143
173-207
255-289
344-382

PVA31_VARV
PROTEIN A23
VARIOLA VIRUS
95-143
173-207
255-289
344-382

PVA32_VACCV
PROTEIN A31
VARIOLA VIRUS
88-126

PVA32_VARV
PROTEIN A32
VACCINIA VIRUS

(STRAIN WR), AND (STRAIN COPENHAGEN

PVA33_VARV
PROTEIN A32
VARIOLA VIRUS
217-251

PVA36_VACCV
PROTEIN A33
VARIOLA VIRUS
63-97

PVA36_VARV
PROTEIN A36 PRECURSOR
VACCINIA VIRUS
26-67
109-155

(STRAIN WR), AND (STRAIN COPENHAGEN)

PVA37_VACCC
PROTEIN A36 PRECURSOR
VARIOLA VIRUS
26-67

PVA37_VACCV
PROTEIN A37
VACCINIA VIRUS (STRAIN COPENHAGEN)
24-65

PVA38_VACCC
PROTEIN A37
VACCINIA VIRUS (STRAIN WR)
24-65

PVA38_VACCV
PROTEIN A38
VACCINIA VIRUS (STRAIN COPENHAGEN)
44-91

PVA38_VARV
PROTEIN A38
VACCINIA VIRUS (STRAIN WR)
44-91

PVA39_VACCC
PROTEIN A38
VARIOLA VIRUS
44-91

PVA39_VACCV
PROTEIN A39
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-71

PVA46_VACCC
PROTEIN A39
VACCINIA VIRUS (STRAIN WR)
75-109

PVA46_VACCV
PROTEIN A46
VACCINIA VIRUS (STRAIN COPENHAGEN)
81-126

PVA46_VARV
PROTEIN A46
VACCINIA VIRUS (STRAIN WR)
81-126

PVA47_VACCC
PROTEIN A46
VARIOLA VIRUS
81-126

PVA47_VACCV
PROTEIN A47
VACCINIA VIRUS (STRAIN COPENHAGEN)
62-96
143-184

PVA47_VARV
PROTEIN A47
VACCINIA VIRUS (STRAIN WR)
62-96
143-184

PVA49_VACCC
PROTEIN A47
VARIOLA VIRUS
62-96
143-184

PVA49_VACCV
PROTEIN A49
VACCINIA VIRUS (STRAIN COPENHAGEN)
3-40
126-160

PVA49_VARV
PROTEIN A49
VACCINIA VIRUS (STRAIN WR)
3-40
126-160

PVA52_VACCC
PROTEIN A49
VARIOLA VIRUS
3-40
126-160

PVA52_VACCV
PROTEIN A52
VACCINIA VIRUS (STRAIN COPENHAGEN)
91-132

PVA57_VACCC
PROTEIN A52
VACCINIA VIRUS (STRAIN WR)
91-132

PVA57_VACCV
GUANYLATE KINASE HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
134-168

PVAL1_MSVK
GUANYLATE KINASE HOMOLOG
VACCINIA VIRUS (STRAIN WR)
134-168

PVAL1_MSVN
AL1 PROTEIN
MAIZE STREAK VIRUS (KENYAN ISOLATE)
230-269

PVAL1_MSVS
AL1 PROTEIN
MAIZE STREAK VIRUS (NIGERIAN ISOLATE)
228-262

PVAL1_SLCV
AL1 PROTEIN
MAIZE STREAK VIRUS
228-262

(SOUTH-AFRICAN ISOLATE)

PVAL1_TYDVA
AL1 PROTEIN
SQUASH LEAF CURL VIRUS
117-151

PVAL3_ABMVW
AL1 PROTEIN
TOBACCO YELLOW DWARF VIRUS
191-225

(STRAIN AUSTRALIA)

PVAL3_BGMV
AL3 PROTEIN
ABUTILON MOSAIC VIRUS
44-78
83-124

(ISOLATE WEST INDIA)

PVAL3_PYMVV
AL3 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
44-78
83-124

PVAL3_SLCV
AL3 PROTEIN
POTATO YELLOW MOSAIC VIRUS
30-78
87-121

(ISOLATE VENEZUELA)

PVAL3_TGMV
AL3 PROTEIN
SQUASH LEAF CURL VIRUS
46-80
91-125

PVAT_CAMVC
AL3 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
44-78

PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
84-127

(STRAIN CM-1841)

PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70

(STRAIN D/H)

PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
93-127

(STRAIN BBC)

PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
93-127

(STRAIN NY8153)

PVAT_CAMVS
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
93-127

(STRAIN PV147)

PVAT_CAMVW
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
93-130

(STRAIN STRASBOURG)

PVAT_CERV
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
36-70

(STRAIN W260)

PVB03_VACCV
APHID TRANSMISSION PROTEIN
CARNATION ETCHED RING VIRUS
99-138

PVB04_VACCC
PROTEIN B3
VACCINIA VIRUS (STRAIN WR)
108-142

PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)
89-123
321-372
496-530

PVB04_VARV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
89-123
321-372

PVB05_VACC0
PROTEIN B4
VARIOLA VIRUS
89-123
324-372
496-530

PVB05_VACCC
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN LC16MO)
254-298

PRECURSOR

PVB05_VACCL
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
254-298

PRECURSOR

PVB05_VACCV
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN LISTER)
254-298

PRECURSOR

PVB07_VACCV
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
254-298

PRECURSOR

PVB08_VACCC
PROTEIN B7 PRECURSOR
VACCINIA VIRUS
28-62

(STRAIN WR), AND (STRAIN COPENHAGEN)

PVB08_VACCV
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
26-60

PVB18_VACCC
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
26-60

PVB18_VACCV
PROTEIN B18
VACCINIA VIRUS (STRAIN COPENHAGEN)
337-375
491-532

PVB18_VARV
PROTEIN B18
VACCINIA VIRUS (STRAIN WR)
337-375
491-532

PVB19_VACCC
PROTEIN B18
VACCINIA VIRUS
337-378
491-532

PVB19_VACCD
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
87-121

PVB19_VACCV
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN DAIREN I)
85-119

PVB20_VACCC
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN WR)
85-119

PVB21_VACCV
PROTEIN B20
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-85

PVBL1_BGMV
PROTEIN B21
VACCINIA VIRUS (STRAIN WR)
61-95

PVBL1_SLCV
BL1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
159-193

PVBL1_TGMV
BL1 PROTEIN
SQUASH LEAF CURL VIRUS
159-193

PVBR1_BGMV
BL1 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
159-193

PVBR1_SLCV
BR1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
172-206

PVBR1_TGMV
BR1 PROTEIN
SQUASH LEAF CURL VIRUS
20-61

PVC02_VACCC
BR1 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
25-59

PVC02_VACCV
PROTEIN C2
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-82
262-302
391-442

PVC04_SFVKA
PROTEIN C2
VACCINIA VIRUS (STRAIN WR)
37-82
262-302
391-442

PVC04_VACCC
PROTEIN C4
SHOPE FIBROMA VIRUS (STRAIN KASZA)
175-223
374-408

PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-46

PVC04_VARV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
12-46

PVC05_SFVKA
PROTEIN C4
VARIOLA VIRUS
12-46

PVC05_VACCC
HYPOTHETICAL PROTEIN C5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
82-125

PVC05_VACCV
PROTEIN C5
VACCINIA VIRUS (STRAIN COPENHAGEN)
31-68

PVC05_VARV
PROTEIN C5
VACCINIA VIRUS (STRAIN WR)
31-68

PVC08_SFVKA
PROTEIN C5
VARIOLA VIRUS
32-70
73-121

PVC09_SFVKA
HYPOTHETICAL PROTEIN C8
SHOPE FIBROMA VIRUS (STRAIN KASZA)
45-86

PVC09_VACCC
HYPOTHETICAL PROTEIN C9
SHOPE FIBROMA VIRUS (STRAIN KASZA)
63-106

PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
82-116
168-226
289-325
575-612

PVC10_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
82-116
168-226
289-323
575-612

PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
136-180

PVC10_VARV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
136-176

PVC12_SFVKA
PROTEIN C10
VARIOLA VIRUS
136-170

PVC13_SFVKA
HYPOTHETICAL PROTEIN C12
SHOPE FIBROMA VIRUS (STRAIN KASZA)
2-36

PVC16_VACCC
PROTEIN C13
SHOPE FIBROMA VIRUS (STRAIN KASZA)
3-66
137-182
189-240

PVC17_VACCC
PROTEIN C16/B22
VACCINIA VIRUS (STRAIN COPENHAGEN)
142-176

PVC18_VACCC
PROTEIN C17/B23
VACCINIA VIRUS (STRAIN COPENHAGEN)
100-155
325-359

PVC19_SFVKA
PROTEIN C18/B24
VACCINIA VIRUS (STRAIN COPENHAGEN)
40-98

PVC19_VACCC
PROTEIN C19
SHOPE FIBROMA VIRUS (STRAIN KASZA)
56-97

PVCAP_EBV
PROTEIN C19/B25
VACCINIA VIRUS (STRAIN COPENHAGEN)
218-252

PVCAP_HCMVA
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
150-184
670-709

PVCAP_HSV11
MAJOR CAPSID PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
136-174
191-225
260-294

PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
116-175
308-356

PVCAP_HSVEB
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS
136-174
230-266
311-382

PVCAP_HSVSA
MAJOR CAPSID PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
150-184
304-352

PVCAP_PRVIS
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
479-520
673-714
755-799

PVCAP_VZVD
MAJOR CAPSID PROTEIN
PSEUDORABIES VIRUS (STRAIN INDIANA S)
105-160
292-326

PVCG3_NPVAC
MAJOR CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
128-198
316-350

PVD05_FOWP1
DNA-BINDING PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
110-248

POLYHEDROSIS VIRUS

PVD05_VACCC
92.6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
145-181

PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
123-157

PVD05_VARV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
123-157

PVD09_VACCC
PROTEIN D5
VARIOLA VIRUS
123-157

PVD09_VACCV
PROTEIN D9
VACCINIA VIRUS (STRAIN COPENHAGEN)
126-160

PVD09_VARV
PROTEIN D9
VACCINIA VIRUS (STRAIN WR)
126-160

PVD10_FOWP1
PROTEIN D9
VARIOLA VIRUS
126-160

PVD10_SFVKA
PROTEIN D10
FOWLPOX VIRUS (STRAIN FP-1)
65-99
188-222

PVD10_VARV
PROTEIN D10
SHOPE FIBROMA VIRUS (STRAIN KASZA)
4-52

PVDBP_CAMVC
PROTEIN D10
VARIOLA VIRUS
67-105

PVDBP_CAMVD
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
1-35

PVDBP_CAMVE
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
1-35

PVDBP_CAMVN
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
1-35

PVDBP_CAMVS
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
1-35

PVE02_VACCC
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
1-35

(STRAIN STRASBOURG)

PVE02_VACCV
PROTEIN E2
VACCINIA VIRUS (STRAIN COPENHAGEN)
282-336

PVE02_VARV
PROTEIN E2
VACCINIA VIRUS (STRAIN WR)
282-336

PVE03_VACCC
PROTEIN E2
VARIOLA VIRUS
282-336

PVE03_VACCV
PROTEIN E3
VACCINIA VIRUS (STRAIN COPENHAGEN)
17-61

PVE03_VARV
PROTEIN E3
VACCINIA VIRUS (STRAIN WR)
17-61

PVE05_VACCC
PROTEIN E3
VARIOLA VIRUS
17-61

PVE05_VACCD
PROTEIN E5
VACCINIA VIRUS (STRAIN COPENHAGEN)
28-93

PVE05_VACCV
PROTEIN E5
VACCINIA VIRUS (STRAIN DAIREN 1)
38-103

PVE05_VARV
PROTEIN E5
VACCINIA VIRUS (STRAIN WR)
38-103

PVE06_VACCC
PROTEIN E5
VARIOLA VIRUS
38-103

PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
105-139
232-266

PVE06_VARV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
105-139
232-266

PVE18_NPVAC
PROTEIN E6
VARIOLA VIRUS
105-139
367-401

PVE1_HPV1A
EARLY 18.5 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
112-163

POLYHEDROSIS VIRUS

PVE1_HPV31
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
137-171

PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
56-90

PVE1_HPV35
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
33-67
133-167

PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
56-90

PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
59-96

PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
55-89
312-346

PVE1_HPV58
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
25-87

PVE1_HPV6B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
33-67
119-174

PVE1_PAPVE
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
265-299

PVE26_NPVAC
E1 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS
176-210

PVE2_CRPVK
EARLY 25.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
72-117

POLYHEDROSIS VIRUS

PVE2_HPV05
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE)
3-44

PAPILLOMAVIRUS (STRAIN KANS

PVE2_HPV08
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
5-57
276-310
342-383
437-471

PVE2_HPV16
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
5-55
148-182

PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
61-105
315-349

PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
65-100

PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
3-37
159-193

PVE2_HPV31
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
13-47
159-193

PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
61-105

PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
63-101
297-331

PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
62-106
158-192

PVE2_HPV41
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
74-110
323-357

PVE2_HPV47
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
6-54

PVE2_HPV51
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
5-55
148-182

PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
154-191

PVE2_HPV58
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
13-47
179-213

PVE2_HPV5B
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
2-36

PVE2_PAPVD
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
5-57

PVE2_PAPVE
PROBABLE E2 PROTEIN
DEER PAPILLOMAVIRUS
107-141

PVE2_PCPV1
PROBABLE E2 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS
113-150

PVE2_RHPV1
E2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
318-361

PVE39_NPVAC
E2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
62-106
307-341

PVE39_NPVOP
EARLY 39 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
20-57

POLYHEDROSIS VIRUS

PVE4_HPV18
EARLY 39 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
119-156

POLYHEDROSIS VIRUS

PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
42-86

PVE5_HPV5B
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
63-97

PVEF_GVTN
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
3-40
96-130

PVENV_BEV
VIRAL ENHANCING FACTOR (VEF)
TRICHOPLUSIA NI GRANULOSIS VIRUS (TNGV)
681-719

(104 KD GLYCOP

PVENV_DHVI1
ENVELOPE PROTEIN
BERNE VIRUS (BEV)
195-229

PVENV_MCV1
ENVELOPE GLYCOPROTEIN PRECURSOR
DHORI VIRUS (STRAIN INDIAN/1313/61) (DHO)
318-366

PVENV_MCV2
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 1
252-286

(43 KD PROTEIN) (P43K
(MCVI)

PVENV_THOGV
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 2
252-286

(43 KD PROTEIN) (P43K
(MCVII)

PVENV_VACCC
ENVELOPE GLYCOPROTEIN PRECURSOR
THOGOTO VIRUS (THO)
313-354

(SURFACE

PVENV_VACCI
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
257-295

(37 KD PROTEIN) (P37K

PVENV_VACCP
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN 1HD-J)
257-295

(37 KD PROTEIN) (P37K

PVENV_VACCV
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN L-IVP)
257-295

(37 KD PROTEIN) (P37K

PVENV_VARV
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN WR)
257-295

(37 KD PROTEIN) (P37K

PVETS_NPVAC
MAJOR ENVELOPE PROTEIN
VARIOLA VIRUS
257-295

(37 KD PROTEIN) (P37K

PVF01_VACCC
ECORI-T SITE PROTEIN ETS
AUTOGRAPHA CALIFORNICA NUCLEAR
1-53

POLYHEDROSIS VIRUS (

PVF01_VACCV
PROTEIN F1
VACCINIA VIRUS (STRAIN COPENHAGEN),
46-80
124-158

AND VACCINIA VIRUS

PVF03_VACCC
PROTEIN F1 (FRAGMENT)
VACCINIA VIRUS (STRAIN WR)
46-80
124-158

PVF03_VACCV
PROTEIN F3
VACCINIA VIRUS (STRAIN COPENHAGEN)
71-110

PVF05_VACCC
PROTEIN F3
VACCINIA VIRUS (STRAIN WR)
71-110

PVF05_VACCP
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
81-129
282-320

PRECURSOR

PVF05_VACCV
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN L-IVP)
81-129
282-320

PRECURSOR

PVF05_VARV
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN WR)
81-129
283-321

PRECURSOR

PVF06_VARV
36 KD MAJOR MEMBRANE PROTEIN
VARIOLA VIRUS
81-122
281-322

PRECURSOR

PVF11_VACCC
PROTEIN F6
VARIOLA VIRUS
8-44

PVF11_VACCP
PROTEIN F11
VACCINIA VIRUS (STRAIN COPENHAGEN)
217-258
269-315

PVF11_VARV
PROTEIN F11
VACCINIA VIRUS (STRAIN L-IVP)
213-254
265-311

PVF12_VACCC
PROTEIN F11
VARIOLA VIRUS
41-75
269-315

PVF12_VACCP
PROTEIN F12
VACCINIA VIRUS (STRAIN COPENHAGEN)
1-67
102-143
199-236
350-388
544-581

PVF12_VARV
PROTEIN F12
VACCINIA VIRUS (STRAIN L-IVP)
1-67
102-143
199-236
350-388
544-581

PVF16_VACCC
PROTEIN F12
VARIOLA VIRUS
1-67
199-236
350-388
547-581

PVF16_VACCP
PROTEIN F16
VACCINIA VIRUS (STRAIN COPENHAGEN)
155-194

PVF16_VARV
PROTEIN F16
VACCINIA VIRUS (STRAIN L-IVP)
155-194

PVFP3_FOWPV
PROTEIN F16
VARIOLA VIRUS
155-194

PVFP4_FOWPV
PROTEIN FP3
FOWLPOX VIRUS
1-43

PVFP7_FOWPV
PROTEIN FP4
FOWLPOX VIRUS
139-173
239-273

PVFPL_FOWP1
PROTEIN FP7
FOWLPOX VIRUS
23-57

PVFUS_VACCC
FPLEET PROTEIN (FRAGMENT)
FOWLPOX VIRUS (STRAIN FP-1)
77-111

PVFUS_VACCV
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
30-64

PVG01_HSVI1
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
30-64

PVG01_VACCC
HYPOTHETICAL GENE 1 PROTEIN
ICTALURID HERPESVIRUS 1
271-306
512-563
591-647
730-764

(CHANNEL CATFISH VIRUS) (CCV)

PVG01_VACCV
PROTEIN G1
VACCINIA VIRUS (STRAIN COPENHAGEN)
301-339

PVG01_VARV
PROTEIN G1 (FRAGMENT)
VACCINIA VIRUS (STRAIN WR)
240-278

PVG03_HSVEB
PROTEIN G1
VARIOLA VIRUS
301-339

PVG03_HSVEK
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1
143-177

(STRAIN AB4P) (EHV-1)

PVG03_VARV
GENE 3 PROTEIN (ORF L1)
EQUINE HERPESVIRUS TYPE 1
143-177

(STRAIN KENTUCKY A) (EHV-1)

PVG05_VACCC
PROTEIN G3
VARIOLA VIRUS
64-98

PVG05_VARV
PROTEIN G5
VACCINIA VIRUS (STRAIN COPENHAGEN)
117-158
255-289
355-389

PVG06_HSVI1
PROTEIN G5
VARIOLA VIRUS
117-158
255-289
355-389

PVG07_HSVI1
HYPOTHETICAL GENE 6 MEMBRANE
ICTALURID HERPESVIRUS 1
61-109

PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)

PVG07_VACCC
HYPOTHETICAL GENE 7 MEMBRANE
ICTALURID HERPESVIRUS 1
69-103

PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)

PVG07_VARV
PROTEIN G7
VACCINIA VIRUS (STRAIN COPENHAGEN)
114-175
324-358

PVG09_VACCC
PROTEIN G7
VARIOLA VIRUS
114-175
324-358

PVG09_VACCV
PROTEIN F1 (PROTEIN G9)
VACCINIA VIRUS (STRAIN COPENHAGEN)
304-338

PVG09_VARV
PROTEIN F1 (PROTEIN G9)
VACCINIA VIRUS (STRAIN WR)
304-338

(FRAGMENT)

PVG10_HSVI1
PROTEIN F1 (PROTEIN G9)
VARIOLA VIRUS
304-338

PVG12_SPV1R
HYPOTHETICAL GENE 10 MEMBRANE
ICTALURID HERPESVIRUS 1
63-97

PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)

PVG16_HSVSA
GENE 12 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
11-45

PVG17_HSVI1
HYPOTHETICAL GENE 16 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
58-95

PVG18_HSVI1
HYPOTHETICAL GENE 17 PROTEIN
ICTALURID HERPESVIRUS 1
92-129
177-211

(CHANNEL CATFISH VIRUS) (CCV)

PVG1L_AMEPV
HYPOTHETICAL GENE 18 PROTEIN
ICTALURID HERPESVIRUS 1
174-208
215-256

(CHANNEL CATFISH VIRUS) (CCV)

PVG1_SPV1R
G1L PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
407-441

PVG1_SPV4
CAPSID PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
136-170
256-297
320-357

PVG22_HSVI1
CAPSID PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
287-321

PVG24_HSVI1
HYPOTHETICAL GENE 22 PROTEIN
ICTALURID HERPESVIRUS 1
117-158
437-629
660-892
899-

(CHANNEL CATFISH VIRUS) (CCV)

1055

PVG27_HSVI1
HYPOTHETICAL GENE 24 PROTEIN
ICTALURID HERPESVIRUS 1
7-72
74-108

(CHANNEL CATFISH VIRUS) (CCV)

PVG28_HSVI1
HYPOTHETICAL GENE 27 PROTEIN
ICTALURID HERPESVIRUS 1
164-219

(CHANNEL CATFISH VIRUS) (CCV)

PVG2R_AMEPV
HYPOTHETICAL GENE 28 PROTEIN
ICTALURID HERPESVIRUS 1
253-290

(CHANNEL CATFISH VIRUS) (CCV)

PVG2_SPV1R
HYPOTHETICAL G2R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
29-63
184-218

PVG2_SPV4
GENE 2 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
222-256
285-326

PVG33_HSVI1
GENE 2 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
255-310

PVG34_HSVI1
HYPOTHETICAL GENE 33 PROTEIN
ICTALURID HERPESVIRUS 1
149-183

(CHANNEL CATFISH VIRUS) (CCV)

PVG35_HSVI1
HYPOTHETICAL GENE 34 PROTEIN
ICTALURID HERPESVIRUS 1
345-379

(CHANNEL CATFISH VIRUS) (CCV)

PVG37_HSVI1
HYPOTHETICAL GENE 35 PROTEIN
ICTALURID HERPESVIRUS 1
17-90

(CHANNEL CATFISH VIRUS) (CCV)

PVG38_HSVI1
HYPOTHETICAL GENE 37 PROTEIN
ICTALURID HERPESVIRUS 1
435-472

(CHANNEL CATFISH VIRUS) (CCV)

PVG39_HSVI1
HYPOTHETICAL GENE 38 PROTEIN
ICTALURID HERPESVIRUS 1
84-118

(CHANNEL CATFISH VIRUS) (CCV)

PVG3_SPV1R
HYPOTHETICAL GENE 39 PROTEIN
ICTALURID HERPESVIRUS 1
124-158
266-300

(CHANNEL CATFISH VIRUS) (CCV)

PVG3_SPV4
GENE 3 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
8-49
162-196
203-244

PVG43_HSVI1
GENE 3 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
6-54
87-121

PVG45_HSVSA
HYPOTHETICAL GENE 43 PROTEIN
ICTALURID HERPESVIRUS 1
116-150
262-296
324-361
643-677

(CHANNEL CATFISH VIRUS) (CCV)

PVG46_HSVI1
HYPOTHETICAL GENE 45 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
121-162

PVG48_HSVI1
PROBABLE MAJOR GLYCOPROTEIN
ICTALURID HERPESVIRUS 1
45-86
939-
1251-

(CHANNEL CATFISH VIRUS) (CCV)

1078
1321

PVG48_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
ICTALURID HERPESVIRUS 1
169-207

(CHANNEL CATFISH VIRUS) (CCV)

PVG49_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
360-417
611-666
733-767

PVG4R_AMEPV
HYPOTHETICAL GENE 49 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
68-102

PVG4_SPV4
G4R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
4-38

PVG51_HSVI1
GENE 4 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
89-130

PVG51_HSVSA
HYPOTHETICAL GENE 51 MEMBRANE
ICTALURID HERPESVIRUS 1
34-73
89-123

PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)

PVG53_HSVI1
GENE 51 GLYCOPROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
29-70
123-157
162-196

PVG54_HSVI1
HYPOTHETICAL GENE 53 PROTEIN
ICTALURID HERPESVIRUS 1
67-127

(CHANNEL CATFISH VIRUS) (CCV)

PVG55_HSVI1
HYPOTHETICAL GENE 54 PROTEIN
ICTALURID HERPESVIRUS 1
355-396

(CHANNEL CATFISH VIRUS) (CCV)

PVG55_HSVSA
HYPOTHETICAL GENE 55 PROTEIN
ICTALURID HERPESVIRUS 1
101-135

(CHANNEL CATFISH VIRUS) (CCV)

PVG56_HSVI1
HYPOTHETICAL GENE 55 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
126-178

PVG59_HSVI1
HYPOTHETICAL GENE 56 PROTEIN
ICTALURID HERPESVIRUS 1
151-192
578-612
644-678
750-784
846-880
1111-

(CHANNEL CATFISH VIRUS) (CCV)

1145

PVG59_HSVSA
HYPOTHETICAL GENE 59 MEMBRANE
ICTALURID HERPESVIRUS 1
10-72
89-123

PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)

PVG5_SPV1R
GENE 59 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
169-209

PVG61_HSVI1
GENE 5 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
65-103

PVG63_HSVI1
HYPOTHETICAL GENE 61 PROTEIN
ICTALURID HERPESVIRUS 1
265-299

(CHANNEL CATFISH VIRUS) (CCV)

PVG65_HSVI1
HYPOTHETICAL GENE 63 PROTEIN
ICTALURID HERPESVIRUS 1
546-584

(CHANNEL CATFISH VIRUS) (CCV)

PVG66_HSVI1
HYPOTHETICAL GENE 65 PROTEIN
ICTALURID HERPESVIRUS 1
805-839
1213-

(CHANNEL CATFISH VIRUS) (CCV)

1254

PVG67_HSVI1
HYPOTHETICAL GENE 66 PROTEIN
ICTALURID HERPESVIRUS 1
154-188
328-410

(CHANNEL CATFISH VIRUS) (CCV)

PVG68_HSVI1
HYPOTHETICAL GENE 67 PROTEIN
ICTALURID HERPESVIRUS 1
379-413
501-546
1321-
1478-

(CHANNEL CATFISH VIRUS) (CCV)

1369
1541

PVG72_HSVI1
HYPOTHETICAL GENE 68 PROTEIN
ICTALURID HERPESVIRUS 1
245-288

(CHANNEL CATFISH VIRUS) (CCV)

PVG75_HSVI1
HYPOTHETICAL GENE 72 PROTEIN
ICTALURID HERPESVIRUS 1
447-484
723-757
912-949

(CHANNEL CATFISH VIRUS) (CCV)

PVG8_SPV1R
HYPOTHETICAL GENE 75 PROTEIN
ICTALURID HERPESVIRUS 1
217-305
388-422

(CHANNEL CATFISH VIRUS) (CCV)

PVGF1_1BVB
GENE 8 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
5-51

PVGH3_HCMVA
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
142-179
1233-
2119-
3388-
3475-
3517-
3761-

(STRAIN BEAUDETTE) (I

1267
2156
3424
3513
3556
3795

PVGL1_CVPR8
GLYCOPROTEIN H301 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)

PVGL2_CVBF
E1 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
212-257

(MATRIX GLYCOP
(STRAIN 86/137004/BRI

PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15
642-676
850-885
993-
1263-

(SPIKE GLYCOPRO

1088
1305

PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN L9)
850-885
993-
1263-

(SPIKE GLYCOPRO

1109
1305

PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
642-676
850-885
993-
1263-

(SPIKE GLYCOPRO

1109
1305

PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS
642-676
850-885
993-
1263-

(SPIKE GLYCOPRO

1109
1305

PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
642-676
850-885
993-
1263-

(SPIKE GLYCOPRO

1109
1305

PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN VACCINE)
642-676
850-885
993-
1263-

(SPIKE GLYCOPRO

1109
1305

PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR
HUMAN CORONAVIRUS (STRAIN 229E)
770-916
1055-

(SPIKE GLYCOPRO

1112

PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV
643-684
1001-
1270-

(SPIKE GLYCOPRO
(STRAIN WILD TYPE 4) (MHV-4)

1117
1315

PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV
591-632
949-
1218-

(SPIKE GLYCOPRO
(STRAIN A59)

1079
1263

PVGL2_CVMJH
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV
643-684
1001-
1270-

(SPIKE GLYCOPRO
(STRAIN JHMV/VARIANT CL-2)

1117
1315

PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV
503-543
860-976
1129-

(SPIKE GLYCOPRO
(STRAIN JHM)

1174

PVGL2_CVPMI
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
448-482
692-733
889-923
1040-
1352-

(SPIKE GLYCOPRO
CORONAVIRUS (S

1186
1389

PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
448-482
692-733
889-923
1040-
1352-

(SPIKE GLYCOPRO
CORONAVIRUS (S

1186
1389

PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
70-110
446-480
690-731
887-921
1038-
1350-

(SPIKE GLYCOPRO
CORONAVIRUS (S

1184
1387

PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
446-480
690-731
887-921
1038-
1350-

(SPIKE GLYCOPRO
CORONAVIRUS (S

1184
1387

PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
224-258
468-509
665-699
816-962
1128-

(SPIKE GLYCOPRO
(STRAIN 86/137004/BRIT

1165

PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
224-258
468-509
665-699
816-962
1128-

(SPIKE GLYCOPRO
(STRAIN RM4) (PRCV)

1165

PVGL2_EBV
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
446-480
690-731
887-921
1038-
1350-

(SPIKE GLYCOPRO
CORONAVIRUS (S

1184
1387

PVGL2_FIPV
PROBABLE MEMBRANE GLYCOPROTEIN

68-102

PVGL2_IBV6
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS
189-245
451-485
695-736
892-926
1043-
1355-

(STRAIN 79-1146)

1189
1392

PVGL2_IBVB
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
791-905
1057-

(STRAIN 6/82)

1091

PVGL2_IBVD2
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
437-478
772-904
1056-

(STRAIN BEAUDETTE)

1090

PVGL2_IBVK
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
773-905
1057-

(STRAIN D274)

1091

PVGL2_IBVM
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
437-478
772-904
1056-

(STRAIN KB8523)

1090

PVGLB_HCMVA
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
437-478
772-904
1056-

(STRAIN M41)

1090

PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
43-88
128-162
436-484
844-878

PVGLB_HSV11
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
22-88
128-162
437-478
451-485
845-879

PVGLB_HSV1F
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
828-890

PVGLB_HSV1K
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)]
827-889

PVGLB_HSV1P
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
827-889

PVGLB_HSV23
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS
828-890

(TYPE 1/STRAIN PATTON)

PVGLB_HSV2H
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
828-890

PVGLB_HSV2S
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
828-890

PVGLB_HSV6U
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN SA8)
817-871

PVGLB_HSVB1
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
37-71
185-223

(TYPE 6/STRAIN UGANDA-1102)

PVGLB_HSVB2
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
859-913

PVGLB_HSVBC
GLYCOPROTEIN B-1 PRECURSOR
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
440-474
848-902

PVGLB_HSVE1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
863-900

PVGLB_HSVE4
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (ISOLATE HVS25A)
542-576
911-961

PVGLB_HSVEA
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
474-515
847-900

PVGLB_HSVEB
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1)
542-576
911-961

PVGLB_HSVEL
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
542-576
911-961

PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1
542-576
910-960

(STRAIN KENTUCKY D)

PVGLB_HSVSA
GLYCOPROTEIN B PRECURSOR
MAREK'S DISEASE HERPESVIRUS
390-435
649-683
787-845

(STRAIN RB-1B)

PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
240-288
406-447

PVGLB_PRVIF
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
206-260
427-475
693-734
744-778
860-894

PVGLB_VZVD
GLYCOPROTEIN GII PRECURSOR
PSEUDORABIES VIRUS
847-881

(STRAIN INDIANA-FUNKHAUSER/BECKE

PVGLC_HSV11
GLYCOPROTEIN B PRECURSOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
92-133
596-630
809-867

PVGLC_HSV1K
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
469-510

PVGLC_HSV2
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
469-510

PVGLC_HSV23
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
442-476

PVGLC_HSVBC
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
443-477

PVGLC_HSVEB
GLYCOPROTEIN GIII PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
235-269

PVGLC_HSVMB
GLYCOPROTEIN C PRECURSOR
EQUINE HERPESVIRUS TYPE 1
182-218

(STRAIN AB4P) AND (STRAIN KEN

PVGLC_HSVMD
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS
63-97

PRECURSOR
(STRAIN BC-1)

PVGLC_HSVMG
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS
63-97

PRECURSOR
(STRAIN RB-1B)

PVGLC_HSVMM
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS
62-96

PRECURSOR
(STRAIN GA)

PVGLC_PRVIF
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS
63-97

PRECURSOR
(STRAIN MD5)

PVGLC_VZVD
GLYCOPROTEIN G111 PRECURSOR
PSEUDORABIES VIRUS
183-235

(STRAIN INDIANA-FUNKHAUSER/BECKE

PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
280-321

PVGLD_HSVEA
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN SCOTT)
280-321

PVGLD_HSVEB
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
89-123

(STRAIN AB1)

PVGLD_HSVEK
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
139-173

(STRAIN AB4P) AND (STRAIN KEN

PVGLE_HSV11
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
139-173

(STRAIN KENTUCKY A)

PVGLE_HSV2
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
111-145

PVGLF_BRSVA
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
111-159

PVGLF_BRSVC
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
146-202
504-545

(STRAIN A51908)

PVGLF_BRSVR
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
146-202
267-302
506-547

(STRAIN COPENHAGE

PVGLF_CDVO
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
146-202
267-302
506-554

(STRAIN RB94)

PVGLF_HRSV1
FUSION GLYCOPROTEIN PRECURSOR
CANINE DISTEMPER VIRUS
228-297
340-381
568-602

(STRAIN ONDERSTEPOORT)

PVGLF_HRSVA
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
116-203
267-302
506-549

(SUBGROUP B/STRAI

PVGLF_HRSVL
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
116-202
267-302
506-549

(STRAIN A2

PVGLF_HRSVR
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
116-202
267-302
506-547

(SUBGROUP A/STRAI

PVGLF_MEASE
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
116-202
267-302
506-549

(STRAIN RSS-2)

PVGLF_MEASI
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS
116-184
228-269
452-500

(STRAIN EDMONSTON) AND (STRAIN HALLE)

PVGLF_MEASY
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN IP-3-CA)
119-187
231-272
455-503

PVGLF_MUMP1
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN YAMAGATA-1)
116-184
228-269
452-500

PVGLF_MUMPM
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL-1)
20-54
103-179
235-272
447-502

PVGLF_MUMPR
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
20-54
103-179
235-272
447-502

PVGLF_MUMPS
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN RW)
20-54
103-179
235-272
447-502

PVGLF_NDVA
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL)
20-54
103-179
235-272
447-502

PVGLF_NDVB
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
117-182
231-272
426-512

(STRAIN AUSTRALIA-VICTORIA/32)

PVGLF_NDVH3
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
426-517

(STRAIN BEAUDETTE C/45)

PVGLF_NDVH4
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
117-182
231-272
426-517

(STRAIN HER/33)

PVGLF_NDVI
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
426-517

(STRAIN B1-HITCHNER/47)

PVGLF_NDVL
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
133-182
238-272
426-517

(STRAIN ITALIEN/45)

PVGLF_NDVM
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
133-182
231-272
426-517

(STRAIN LAS/46)

PVGLF_NDVQ
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
117-182
231-272
426-512

(STRAIN MIYADERA/51)

PVGLF_NDVT
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
433-512

(STRAIN QUEENSLAND/66)

PVGLF_NDVTG
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
117-182
231-272
426-517

(STRAIN TEXAS)

PVGLF_NDVU
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
426-517

(STRAIN TEXAS G.B./48)

PVGLF_PHODV
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
426-512

(STRAIN ULSTER/67)

PVGLF_PI1HC
FUSION GLYCOPROTEIN PRECURSOR
PHOCINE DISTEMPER VIRUS
29-63
197-266
309-350
533-581

PVGLF_PI2H
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 1 VIRUS
123-174
207-267
459-503

(STRAIN C39)

PVGLF_PI2HG
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
93-183
477-528

PVGLF_PI2HT
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
93-183
477-528

(STRAIN GREER)

PVGLF_PI3B
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
93-185
477-528

(STRAIN TOSHIBA)

PVGLF_PI3H4
FUSION GLYCOPROTEIN PRECURSOR
BOVINE PARAINFLUENZA 3 VIRUS
117-182
207-241
456-518

PVGLF_RINDK
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 3 VIRUS
117-182
207-241
462-532

(STRAIN NIH 47885)

PVGLF_RINDL
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS
112-180
224-265
448-493

(STRAIN KABETE O)

PVGLF_SEND5
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS
112-180
224-265
448-506

(STRAIN L)

PVGLF_SENDF
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
127-188
211-271
463-533

PVGLF_SENDH
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN FUSHIMI)
127-188
211-271
463-533

PVGLF_SENDJ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HARRIS)
127-188
218-271
463-533

PVGLF_SENDZ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HVJ)
127-188
211-271
463-533

PVGLF_SV41
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z)
127-188
211-271
463-533

PVGLF_SV5
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 41
96-186
454-508

PVGLF_TRTV
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 5 (STRAIN W3)
103-171
241-275
451-487

PVGLG_BEFV
FUSION GLYCOPROTEIN PRECURSOR
TURKEY RHINOTRACHEITIS VIRUS (
105-161
190-224
457-498

PVGLG_BRSVC
SPIKE GLYCOPROTEIN PRECURSOR
BOVINE EPHEMERAL FEVER VIRUS
506-612

PVGLG_HRSV1
MAJOR SURFACE GLYCOPROTEIN G
BOVINE RESPIRATORY SYNCYTIAL VIRUS
30-70
104-138

(STRAIN COPENHAGE

PVGLG_HRSV2
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-81

(SUBGROUP B/STRAI

PVGLG_HRSV3
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85

(STRAIN RSB642

PVGLG_HRSV4
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85

(STRAIN RSB1734

PVGLG_HRSV5
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-107

(STRAIN RSB5857)

PVGLG_HRSV6
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85

(STRAIN RSB6190)

PVGLG_HRSV7
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85

(STRAIN RSB6256)

PVGLG_HRSV8
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85

(STRAIN RSB6614)

PVGLG_HRSVA
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-81

(SUBGROUP B/STRAI

PVGLG_HRSVL
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-67

(STRAIN A2)

PVGLG_HSVE4
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
25-85

(SUBGROUP A/STRAI

PVGLG_SIGMA
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
271-305

PVGLG_SYNV
SPIKE GLYCOPROTEIN PRECURSOR
SIGMA VIRUS
344-381
464-498

PVGLG_VHSV0
SPIKE GLYCOPROTEIN PRECURSOR
SONCHUS YELLOW NET VIRUS
488-523

PVGLG_VSVIG
SPIKE GLYCOPROTEIN PRECURSOR
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
363-397

(STRAIN 07-71)

PVGLH_EBV
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
476-510

(SEROTYPE INDIANA/STRAIN G

PVGLH_HCMVA
GLYCOPROTEIN GP85 PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
53-87
160-201
336-380
653-694

PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
103-137
270-311
693-741

PVGLH_HSV11
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
102-136
692-740

PVGLH_HSV1E
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
447-481

PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM)
447-481

PVGLH_HSVBC
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
357-406

PVGLH_HSVE4
GLYCOPROTEIN H PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
364-416

PVGLH_HSVEB
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
334-379
414-455

PVGLH_HSVSA
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 1
327-372
407-448

(STRAIN AB4P) AND (ISOLATE HV

PVGLH_MCMVS
GLYCOPROTEIN H PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
32-66
374-453
664-712

PVGLH_PRVKA
GLYCOPROTEIN H PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH
440-474

PVGLH_PRVN3
GLYCOPROTEIN H PRECURSOR
PSEUDORABIES VIRUS (STRAIN KAPLAN)
226-260

PVGLH_PRVRI
GLYCOPROTEIN H PRECURSOR
PSEUDORABIES VIRUS (STRAIN NIA-3)
226-260

PVGLH_VZVD
GLYCOPROTEIN H PRECURSOR
PSEUDORABIES VIRUS (STRAIN RICE)
226-260

PVGLI_HCMVA
PROBABLE GLYCOPROTEIN H PRECURSOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
455-506

PVGLM_BUNGE
IMMEDIATE EARLY GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
47-111
323-359

PRECURSOR

PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
512-567
685-737
1228-

1262

PVGLM_BUNSH
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
643-677
916-950

PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAVIRUS SNOWSHOW HARE
643-677

PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
340-374
504-563
905-939

PVGLM_HANTB
M POLYPROTEIN PRECURSOR
DUGBE VIRUS
937-989
1239-

1300

PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1)
693-727

PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
72-106

PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
72-106

PVGLM_INSV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN 76-118)
72-106

PVGLM_PHV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS
1067-

1101

PVGLM_PTPV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS
73-111

PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
PUNTA TORO PHLEBOVIRUS
149-251

PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
693-727

PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R22)
694-728

PVGLN_BEFV
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11)
693-730

PVGLP_BEV
NONSTRUCTURAL GLYCOPROTEIN
BOVINE EPHEMERAL FEVER VIRUS
377-414
513-569

GNS PRECURSO

PVGLX_PRVRI
PEPLOMER GLYCOPROTEIN PRECURSOR
BERNE VIRUS
43-82
90-124
622-656
1128-

1236

PVGLY_JUNIN
SECRETED GLYCOPROTEIN GX
PSEUDORABIES VIRUS (STRAIN RICE)
420-461

PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN PRECURSOR
JUNIN ARENAVIRUS
301-349

PVGLY_LASSJ
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN GA391)
317-360
388-422

PVGLY_LYCVA
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN JOSIAH)
318-361
389-423

PVGLY_LYCVW
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
333-367
395-432

(STRAIN ARMSTRON

PVGLY_MOPEI
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
124-158
333-367
395-432

(STRAIN WE)

PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
MOPEIA VIRUS
316-359

PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
PICHINDE ARENAVIRUS
334-375

PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS
315-363

PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V5)
303-351
382-416

PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V7)
302-350
381-415

PVGNB_CPMV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN TRVL 11598)
303-351
382-416

PVGNM_CPMV
GENOME POLYPROTEIN B
COWPEA MOSAIC VIRUS
835-869

PVGNM_CPSMV
GENOME POLYPROTEIN M
COWPEA MOSAIC VIRUS
160-201

PVGNM_RCMV
GENOME POLYPROTEIN M
COWPEA SEVERE MOSAIC VIRUS (STRAIN DG)
192-226
758-792
874-915

PVGP8_EBV
GENOME POLYPROTEIN M
RED CLOVER MOTTLE VIRUS
837-871
912-946

PVGP_EBOV
PROBABLE MEMBRANE ANTIGEN GP85
EPSTEIN-BARR VIRUS (STRAIN B95-8)
94-149

PVGP_MABVM
STRUCTURAL GLYCOPROTEIN PRECURSOR
EBOLA VIRUS
280-321
334-368
469-503

PVGP_MABVP
STRUCTURAL GLYCOPROTEIN PRECURSOR
MARBURG VIRUS (STRAIN MUSOKE)
562-596

PVH02_VACCC
STRUCTURAL GLYCOPROTEIN PRECURSOR
MARBURG VIRUS (STRAIN POPP)
562-596

PVH02_VACCV
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN COPENHAGEN)
58-92

PVH02_VARV
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN WR)
58-94

PVH05_VACCC
LATE PROTEIN H2
VARIOLA VIRUS
58-92

PVH05_VACCV
PROTEIN H5
VACCINIA VIRUS (STRAIN COPENHAGEN)
118-185

PVH05_VARV
PROTEIN H5
VACCINIA VIRUS (STRAIN WR)
118-185

PVHEL_LSV
PROTEIN H5
VARIOLA VIRUS
136-203

PVHRP_VACCC
PROBABLE HELICASE
LILY SYMPTOMLESS VIRUS
126-160

PVHRP_VACCV
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
216-279

PVI03_VACCC
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
216-279

PVI03_VACCV
PROTEIN I3
VACCINIA VIRUS (STRAIN COPENHAGEN)
150-193
210-244

PVI03_VARV
PROTEIN I3
VACCINIA VIRUS (STRAIN WR)
150-193
210-244

PVI06_VACCV
PROTEIN I3
VARIOLA VIRUS
150-193
210-244

PVI06_VARV
PROTEIN I6
VACCINIA VIRUS (STRAIN WR)
58-92

PVI07_VARV
PROTEIN I6
VARIOLA VIRUS
58-92

PVI08_VACCC
PROTEIN I7
VARIOLA VIRUS
373-407

PVI08_VACCV
PUTATIVE RNA HELICASE I8
VACCINIA VIRUS (STRAIN COPENHAGEN)
548-589

PVI08_VARV
PUTATIVE RNA HELICASE I8
VACCINIA VIRUS (STRAIN WR)
548-589

PVIE1_HCMVA
PUTATIVE RNA HELICASE I8
VARIOLA VIRUS
548-589

PVIE1_HCMVT
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
78-112
171-205
368-402
416-450

PVIE1_MCMVS
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
78-112
171-205
368-402
416-450

PVIE2_NPVOP
IMMEDIATE-EARLY PROTEIN 1
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
244-297

PVIEN_NPVAC
IMMEDIATE-EARLY PROTEIN IE-2
ORGYIA PSEUDOTSUGATA MULTICAPSID
94-128
305-395

POLYHEDROSIS VIRUS

PVIF_CAEVC
IMMEDIATE-EARLY REGULATORY
AUTOGRAPHA CALIFORNICA NUCLEAR
277-407

PROTEIN IE-N
POLYHEDROSIS VIRUS

PVIF_FIVPE
VIRION INFECTIVITY FACTOR
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
23-92

(STRAIN CORK)

PVIF_FIVSD
VIRION INFECTIVITY FACTOR
FELINE IMMUNODEFICIENCY VIRUS
53-94

(ISOLATE PETALUMA)

PVIF_HV1A2
VIRION INFECTIVITY FACTOR
FELINE IMMUNODEFICIENCY VIRUS
32-80

(ISOLATE SAN DIEGO)

PVIF_HV1B1
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(ARV2/SF2 ISOLATE

PVIF_HV1B5
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(BH10, BRU, HXB2, PV

PVIF_HV1EL
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(BH5 ISOLATE)

PVIF_HV1JR
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(ELI ISOLATE)

PVIF_HV1MA
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(JRCSF ISOLATE)

PVIF_HV1MN
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
2-36

(MAL ISOLATE)

PVIF_HV1N5
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(MN ISOLATE)

PVIF_HV1NA
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(NEW YORK-5 ISOL

PVIF_HVIND
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(ISOLATE NIT-A)

PVIF_HV1OY
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(NDK ISOLATE)

PVIF_HV1RH
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(OYI ISOLATE)

PVIF_HV1U4
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(RF/HAT ISOLATE)

PVIF_HV1Z2
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42

(STRAIN UGANDAN

PVIF_HV1Z6
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(Z2/CDC-Z34 ISOLAT

PVIF_HV2D2
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-42
62-96

(ZAIRE 6 ISOLATE)

PVIF_HV2NZ
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
147-195

(ISOLATE D205,7)

PVIF_HV2RO
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
152-193

(ISOLATE NIH-Z)

PVIF_OMVVS
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
163-197

(ISOLATE ROD)

PVIF_SIVAI
VIRION INFECTIVITY FACTOR
OVINE LENTIVIRUS (STRAIN SA-OMVV)
44-114

PVIF_SIVAG
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
2-58
150-202

(AGM155 ISOLATE)

PVIF_SIVA1
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
17-58

(AGM3 ISOLATE)

PVIF_SIVAT
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
2-36
143-187

(ISOLATE AGM/CLONE GR1

PVIF_SIVCZ
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
20-58
150-195

(TYO-1 ISOLATE)

PVIF_SIVGB
VIRION INFECTIVITY FACTOR
CHIMPANZEE IMMUNODEFICIENCY VIRUS
1-42

PVIMP_HSV11
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
1-39

(ISOLATE GB1)

PVIMP_HSVEB
PROBABLE INTEGRAL MEMBRANE PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
85-134

PVIMP_HSVSA
PROBABLE INTEGRAL MEMBRANE PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
148-182
335-369

PVIMP_VZVD
INTEGRAL MEMBRANE PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
80-129

PVINT_SSV1
PROBABLE INTEGRAL MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
107-151
155-189
267-301

PVJ01_VACCC
PROBABLE INTEGRASE
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
85-130
138-172

PVJ01_VACCV
PROTEIN J1
VACCINIA VIRUS (STRAIN COPENHAGEN)
22-56

PVJ01_VARV
PROTEIN J1
VACCINIA VIRUS (STRAIN WR)
22-56

PVK03_VACCC
PROTEIN J1
VARIOLA VIRUS
22-56

PVK03_VACCV
PROTEIN K3
VACCINIA VIRUS (STRAIN COPENHAGEN)
38-82

PVK07_VACCV
PROTEIN K3
VACCINIA VIRUS (STRAIN WR)
38-82

PVL02_VACCC
PROTEIN K7
VACCINIA VIRUS
115-149

(STRAIN WR), AND (STRAIN COPENHAGEN)

PVL02_VACCV
PROTEIN L2
VACCINIA VIRUS (STRAIN COPENHAGEN)
47-81

PVL02_VARV
PROTEIN L2
VACCINIA VIRUS (STRAIN WR)
47-92

PVL1_CRPVK
PROTEIN L2
VARIOLA VIRUS
47-81

PVL1_FPVL
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE)
261-295
331-383

PAPILLOMAVIRUS (STRAIN KANS

PVL1_HPV05
PROBABLE L1 PROTEIN
AVIAN PAPILLOMAVIRUS FPV-L
38-90

PVL1_HPV08
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
355-393

PVL1_HPV1A
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
354-392

PVL1_HPV47
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
345-379

PVL1_PAPVD
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
353-391

PVL1_REOVD
PROBABLE L1 PROTEIN
DEER PAPILLOMAVIRUS
23-57

PVL2_HPV05
MAJOR CORE PROTEIN LAMBDA 1
REOVIRUS (TYPE 3/STRAIN DEARING)
94-142
437-471

PVL2_HPV08
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE
341-375

PVL2_HPV16
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
354-392

PVL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
295-333

PVL2_HPV31
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
345-379

PVL2_HPV35
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
288-326

PVL2_HPV47
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
292-333

PVL2_HPV58
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
341-375

PVL2_HPV5B
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
293-327

PVL3_REOVD
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
341-375

PVL3_REOVJ
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 3/STRAIN DEARING)
107-148
1112-

1178

PVL3_REOVL
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 2/STRAIN D5/JONES)
1112-

1178

PVL96_IRV1
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 1/STRAIN LANG)
107-148
331-365
1112-

1178

PVM01_VACCC
L96 PROTEIN
TIPULA IRIDESCENT VIRUS
146-180
198-236

PVM1_REOVL
PROTEIN M1
VACCINIA VIRUS (STRAIN COPENHAGEN)
5-56

PVM21_REOVD
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
287-321

PROTEIN MU-2

PVM22_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
416-450
619-663

PROTEIN MU-1/MU-1C

PVM2_REOVJ
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
416-450
618-662

PROTEIN MU-1/MU-1C

PVM2_REOVL
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 2/STRAIN D5/JONES)
416-450
618-662

PROTEIN MU-1/MU-1C

PVM3_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
416-450
618-662

PROTEIN MU-1/MU-1C

PVMA2_BRSVA
MAJOR NONSTRUCTURAL PROTEIN MU-NS
REOVIRUS (TYPE 3/STRAIN DEARING)
135-190
337-371
523-558
618-690

PVMA2_HRSVA
MATRIX GLYCOPROTEIN M2
BOVINE RESPIRATORY SYNCYTIAL VIRUS
42-90

(STRAIN A51908)

PVMA2_TRTV
MATRIX GLYCOPROTEIN M2
HUMAN RESPIRATORY SYNCYTIAL VIRUS
42-90

(STRAIN A2)

PVMAT_CDVO
MATRIX GLYCOPROTEIN M2
TURKEY RHINOTRACHEITIS VIRUS
36-70

PVMAT_INCJJ
MATRIX PROTEIN
CANINE DISTEMPER VIRUS
193-234

(STRAIN ONDERSTEPOORT)

PVMAT_NDVA
MATRIX (M) PROTEIN
INFLUENZA C VIRUS (STRAIN C/JJ/50)
73-114
151-208

PVMAT_NDVB
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS
310-358

(STRAIN AUSTRALIA-VICTORIA/32)

PVMAT_PI3B
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS
324-358

(STRAIN BEAUDETTE C/45)

PVMAT_PI3H4
MATRIX PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
99-133
204-252

PVMAT_RABVA
MATRIX PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
99-133
204-252

(STRAIN NIH 47885)

PVMAT_RABVC
MATRIX PROTEIN
RABIES VIRUS (STRAIN AVO1)
69-103

PVMAT_RABVE
MATRIX PROTEIN
RABIES VIRUS (STRAIN CVS-11)
69-103

PVMAT_RABVN
MATRIX PROTEIN
RABIES VIRUS (STRAIN ERA)
69-103

PVMAT_RABVP
MATRIX PROTEIN
RABIES VIRUS (STRAIN NISHIGAHARA RCEH)
69-103

PVMAT_RABVS
MATRIX PROTEIN
RABIES VIRUS (STRAIN PV)
69-103

PVMAT_SYNV
MATRIX PROTEIN
RABIES VIRUS (STRAIN SAD B19)
69-103

PVMAT_VSVIG
MATRIX PROTEIN
SONCHUS YELLOW NET VIRUS
246-280

PVME1_CVBM
MATRIX PROTEIN
VESICULAR STOMATITIS VIRUS
198-232

(SEROTYPE INDIANA/STRAIN G

PVME1_CVPFS
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
175-209

PVME1_CVPPU
E1 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
98-146
212-257

CORONAVIRUS (S

PVME1_CVPRM
E1 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
212-257

CORONAVIRUS (S

PVME1_—CVTKE
E1 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
212-257

(STRAIN RM4)

PVME1_FIPV
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS
28-62
175-209

PVME1_IBV6
E1 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS
212-257

(STRAIN 79-1146)

PVME1_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-55
177-218

(STRAIN 6/82)

PVME1_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-55
177-218

(STRAIN BEAUDETTE)

PVME1_IBVK
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-55
177-218

(STRAIN BEAUDETTE M4

PVMEM_EBV
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
177-218

(STRAIN KB8523)

PVMP_CAMVC
PROBABLE MEMBRANE PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
36-94

PVMP_CAMVD
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324

(STRAIN CM-1841)

PVMP_CAMVE
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324

(STRAIN D/H)

PVMP_CAMVN
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324

(STRAIN BBC)

PVMP_CAMVS
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324

(STRAIN NY8153)

PVMP_CAMVW
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324

(STRAIN STRASBOURG)

PVMP_CERV
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324

(STRAIN W260)

PVMP_FMVD
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS
212-246

PVMP_SOCMV
MOVEMENT PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
217-251

PVMSA_HPBDB
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
76-118

PVMSA_HPBDC
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
272-313
324-361

(BROWN SHANGHAI DUCK ISOLATE S

PVMSA_HPBDU
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
271-312
323-360

(STRAIN CHINA)

PVMSA_HPBDW
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
234-275
289-323

PVMSA_HPBGS
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
272-313
324-361

(WHITE SHANGHAI DUCK ISOLATE S3

PVMSA_HPBHE
MAJOR SURFACE ANTIGEN PRECURSOR
GROUND SQUIRREL HEPATITIS VIRUS
210-244

PVMSA_WHV1
MAJOR SURFACE ANTIGEN PRECURSOR
HERON HEPATITIS B VIRUS
294-328

PVMSA_WHV59
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 1
208-242

PVMSA_WHV7
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 59
213-247

PVMSA_WHV81
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 7
213-247

PVMT1_DHVI1
PROBABLE MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
213-247

PRECURSOR
(INFECTIOUS CLONE)

PVMT1_IAANN
MATRIX PROTEIN 1
DHORI VIRUS (STRAIN INDIAN/1313/61)
201-235

PVMT1_IABAN
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/ANN ARBOR/6/60)

PVMT1_IACAO
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/BANGKOK/1/79)

PVMT1_IAFOW
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
31-79

(STRAIN A/CAMEL/MONGOLIA/82)

PVMT1_IAFPR
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/FORT WARREN/1/50), AND (STR

PVMT1_IAFPW
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK

PVMT1_IALE1
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/FOWL PLAGUE VIRUS/WEYBRID

PVMT1_IALE2
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/LENINGRAD/134/57)

PVMT1_IAMAN
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/LENINGRAD/134/17/57)

PVMT1_IAPOC
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/MALLARD/NEW YORK/6750/78)

PVMT1_IAPUE
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/PORT CHALMERS/1/73)

PVMT1_IAUDO
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/PUERTO RICO/8/34)

PVMT1_IAW1L
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/UDORN/307/72)

PVMT1_IAZI1
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/WILSON-SMITH/33

PVMT1_INBAC
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
92-126
174-222

(STRAIN A/SWINE/IOWA/15/30

PVMT1_INBAD
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS
175-209

(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE

PVMT1_INBLE
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS
175-209

(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])

PVMT1_INBSI
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS
175-209

(STRAIN B/LEE/40)

PVMT2_INBAC
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS
175-209

(STRAIN B/SINGAPORE/222/79)

PVMT2_INBAD
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS
132-184

(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE

PVMT2_INBLE
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS
132-184

(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])

PVMT2_INBSI
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS
132-184

(STRAIN B/LEE/40)

PVMT8_MYXVL
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS
132-184

(STRAIN B/SINGAPORE/222/79)

PVN01_VACCC
M-T8 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
46-80
145-197

PVN01_VACCV
PROTEIN N1
VACCINIA VIRUS (STRAIN COPENHAGEN)
64-112

PVN34_ROTBS
PROTEIN N1
VACCINIA VIRUS (STRAIN WR)
64-112

PVN34_ROTPC
NONSTRUCTURAL PROTEIN NS34
BOVINE ROTAVIRUS
64-169

(GROUP C/STRAIN SHINTOKU)

PVNCA_AAV2
NONSTRUCTURAL PROTEIN NS34
PORCINE ROTAVIRUS
64-117
121-169

(GROUP C/STRAIN COWDEN)

PVNCA_RSV
DNA REPLICATION PROTEIN
ADENO-ASSOCIATED VIRUS 2
91-125
217-251

PVNCN_PAVBO
MAJOR NONCAPSID PROTEIN
RICE STRIPE VIRUS
129-163

PVNCS_ADVG
PROBABLE NONCAPSID PROTEIN NP1
BOVINE PARVOVIRUS
221-255

PVNCS_AEDEV
NONCAPSID PROTEIN NS-1
ALEUTIAN MINK DISEASE PARVOVIRUS
19-60
270-304

(STRAIN G)

PVNCS_FPV19
NONCAPSID PROTEIN NS-1
AEDES DENSONUCLEOSIS VIRUS
276-339
521-571
585-640
715-760
780-849

(STRAIN GKV 002 002)

PVNCS_MEVA
NONCAPSID PROTEIN NS-1
FELINE PANLEUKOPENIA VIRUS
53-98

(STRAIN 193)

PVNCS_MUMIM
NONCAPSID PROTEIN NS-1
MINK ENTERITIS VIRUS
53-98

(STRAIN ABASHIRI)

PVNCS_MUMIV
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS (STRAIN MVMI)
35-91
261-297

PVNCS_PAVBO
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS
35-87
259-297

PVNCS_PAVCN
PROBABLE NONCAPSID PROTEIN NS1
BOVINE PARVOVIRUS
181-222

PVNCS_PAVHB
NONCAPSID PROTEIN NS-1
CANINE PARVOVIRUS (STRAIN N)
53-98

PVNCS_PAVHH
NONCAPSID PROTEIN NS-1
HUMAN PARVOVIRUS B19
236-270

PVNCS_PAVPN
NONCAPSID PROTEIN NS-1
HAMSTER PARVOVIRUS H1
35-76
259-297

PVNS1_BTV10
NONCAPSID PROTEIN NS-1
PORCINE PARVOVIRUS (STRAIN NADL-2)
24-77
169-210
309-346

PVNS1_BTV17
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141

(SEROTYPE 10/ISOLATE USA)

PVNS1_BTV1A
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141

(SEROTYPE 17/ISOLATE USA)

PVNS1_BTV1S
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141

(SEROTYPE 1/ISOLATE AUSTRALIA)

PVNS1_BTV20
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141

(SEROTYPE 1/ISOLATE SOUTH AFRICA)

PVNS1_EHDV2
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141

(SEROTYPE 20/ISOLATE AUSTRALIA)

PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
401-454

(SEROTYPE 2/STRAI

PVNS1_IACAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/ANN ARBOR/6/60)

PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
37-71

(STRAIN A/CAMEL/MONGOLIA/82

PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/CHICKEN/GERMANY/N/49)

PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80

(STRAIN A/CHICKEN/JAPAN/24)

PVNS1_IADE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/DUCK/ALBERTA/60/76)

PVNS1_IADU3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80

(STRAIN A/DUCK/ENGLAND/1/56)

PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80

(STRAIN A/DUCK/UKRAINE/1/63)

PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/FORT MONMOUTH/1/47)

PVNS1_IAFPR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/FORT WARREN/1/50, AND (STRA

PVNS1_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK

PVNS1_IALEN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/LENINGRAD/134/57)

PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/LENINGRAD/54/1)

PVNS1_IAMAN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/MALLARD/ALBERTA/88/76

PVNS1_IAMAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/MALLARD/NEW YORK/6750/78)

PVNS1_IAMYN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/MALLARD/NEW YORK/6874/78

PVNS1_IAPI0
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80

(STRAIN A/MYNAH/HANEDA-THAI/76)

PVNS1_IAPI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/PINTAIL/ALBERTA/119/79

PVNS1_IAPI2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/PINTAIL/ALBERTA/121/79)

PVNS1_IAPI3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/PINTAIL/ALBERTA/268/78

PVNS1_IAPUE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/PINTAIL/ALBERTA/358/79)

PVNS1_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/PUERTO RICO/8/34)

PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/TURKEY/BETHLEHEM-GLILIT/14

PVNS1_IATKR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/TURKEY/CANADA/63)

PVNS1_IATRS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/TURKEY/OREGON/71)

PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80

(STRAIN A/TERN/SOUTH AFRICA/61

PVNS1_IAZI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/TERN/TURKMENIA/18/72)

PVNS1_INBAC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83

(STRAIN A/SWINE/IOWA/15/30)

PVNS1_INBGA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/ANN ARBOR/1/66[COLD-ADAPTE

PVNS1_INBHK
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/GA/86)

PVNS1_INBHT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/HONG KONG/8/73), AND (STRAIN

PVNS1_INBID
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/HT/84)

PVNS1_INBLE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/ID/86)

PVNS1_INBMD
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/LEE/40)

PVNS1_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/MARYLAND/59)

PVNS1_INBRU
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177
277-337

(STRAIN B/PA/79)

PVNS1_INBSI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
139-173

(STRAIN B/RU/69)

PVNS1_INBSJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/SINGAPORE/222/79)

PVNS1_INBVJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/SINGAPORE/64)

PVNS1_INBYA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/VICTORIA/87)

PVNS2_AHSV9
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177

(STRAIN B/YAMAGATA/1/73)

PVNS2_BTV17
NONSTRUCTURAL PROTEIN NS2
AFRICAN HORSE SICKNESS VIRUS
67-101

(SEROTYPE 9)

PVNS2_BTV1X
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS
203-237

(SEROTYPE 17/ISOLATE USA)

PVNS2_CVMJH
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS (SEROTYPE 10)
203-237

PVNS2_EHDV2
NONSTRUCTURAL PROTEIN NS2
MURINE CORONAVIRUS MHV (STRAIN JHM)
71-105

PVNS2_IAALA
NONSTRUCTURAL PROTEIN NS2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
206-272
276-311

(SEROTYPE 2/STRAI

PVNS2_IAANA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/ALASKA/6/77), AND (STRAIN A/U

PVNS2_IAANN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/ANAS ACUTA/PRIMORJE/695/76)

PVNS2_IACHI
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/ANN ARBOR/6/60), AND (STRAIN

PVNS2_IACKG
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/CHILE/1/83)

PVNS2_IACKJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79

(STRAIN A/CHICKEN/GERMANY/N/49)

PVNS2_IADA2
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-90

(STRAIN A/CHICKEN/JAPAN/24)

PVNS2_IADE1
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79

(STRAIN A/DUCK/ALBERTA/60/76)

PVNS2_IADU3
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-90

(STRAIN A/DUCK/ENGLAND/1/56)

PVNS2_IAFOM
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-90

(STRAIN A/DUCK/UKRAINE/1/63)

PVNS2_IAFOW
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/FORT MONMOUTH/1/47)

PVNS2_IAFPR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/FORT WARREN/1/50)

PVNS2_IALE2
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK

PVNS2_IALEN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/LENINGRAD/134/17/57)

PVNS2_IAMA6
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/LENINGRAD/54/1)

PVNS2_IAMA8
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79

(STRAIN A/MALLARD/ALBERTA/88/76)

PVNS2_IAMAN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79

(STRAIN A/MALLARD/ALBERTA/827/78)

PVNS2_IAMAO
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/MALLARD/NEW YORK/6750/78)

PVNS2_IAMYN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/MALLARD/NEW YORK/6874/78)

PVNS2_IAPI0
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-90

(STRAIN A/MYNAH/HANEDA-THAI/76)

PVNS2_IAPI1
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/PINTAIL/ALBERTA/119/79)

PVNS2_IAPI2
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79

(STRAIN A/PINTAIL/ALBERTA/121/79)

PVNS2_IAPUE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/PINTAIL/ALBERTA/268/78)

PVNS2_IATKB
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/PUERTO RICO/8/34)

PVNS2_IATKR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79

(STRAIN A/TURKEY/BETHLEHEM-GLILIT/14

PVNS2_IATRS
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79

(STRAIN A/TURKEY/OREGON/71

PVNS2_IAUSS
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-52

(STRAIN A/TERN/SOUTH AFRICA/61)

PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93

(STRAIN A/USSR/90/77)

PVNS2_INBYA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS
2-43
59-119

(STRAIN B/LEE/40

PVNS2_INCJJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS
2-43
59-119

(STRAIN B/YAMAGATA/1/73)

PVNS2_PVM
NONSTRUCTURAL PROTEIN NS2
INFLUENZA C VIRUS
57-98

(STRAIN C/JJ/50)

PVNS3_AHSV3
NONSTRUCTURAL PROTEIN 2
PNEUMONIA VIRUS OF MICE
70-104

PVNS3_AHSV9
NONSTRUCTURAL PROTEIN NS3
AFRICAN HORSE SICKNESS VIRUS
44-78
166-215

(SEROTYPE 3)

PVNS3_BRD
NONSTRUCTURAL PROTEIN NS3
AFRICAN HORSE SICKNESS VIRUS
37-78
88-122
166-215

(SEROTYPE 9)

PVNS3_CVPFS
NONSTRUCTURAL PROTEIN NS3
BROADHAVEN VIRUS
26-98
102-147

PVNS4_CVH22
NONSTRUCTURAL PROTEIN 3-1
PORCINE TRANSMISSIBLE GASTROENTERITIS
13-51

CORONAVIRUS (S

PVNS4_RSV
NONSTRUCTURAL PROTEIN 4
HUMAN CORONAVIRUS (STRAIN 229E)
11-52

PVNS7_CVCAE
NONSTRUCTURAL PROTEIN NS4
RICE STRIPE VIRUS
2-40

PVNS7_CVFE3
NONSTRUCTURAL PROTEIN 7
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
11-47

PVNS7_FIPV
NONSTRUCTURAL PROTEIN 7
FELINE ENTERIC CORONAVIRUS (STRAIN 79-1683)
1-42

PVNSC_CDVO
NONSTRUCTURAL PROTEIN 7
FELINE INFECTIOUS PERITONITIS VIRUS
1-42

(STRAIN 79-1146)

PVNSC_MEASE
NONSTRUCTURAL PROTEIN C
CANINE DISTEMPER VIRUS
50-84
95-152

(STRAIN ONDERSTEPOORT)

PVNSC_MEASI
NONSTRUCTURAL PROTEIN C
MEASLES VIRUS (STRAIN EDMONSTON)
43-84

PVNSC_MEASY
NONSTRUCTURAL PROTEIN C
MEASLES VIRUS (STRAIN IP-3-CA)
43-84

PVNSC_PI1HB
NONSTRUCTURAL PROTEIN C
MEASLES VIRUS (STRAIN YAMAGATA-1)
43-84

PVNSC_PI1HC
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
133-167

(STRAIN C35)

PVNSC_PI1HD
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
133-167

(STRAIN C39)

PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
133-167

(STRAIN C1-5/73)

PVNSC_PI3H4
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
40-75
133-167

(STRAIN C1-14/83)

PVNSC_SEND6
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 3 VIRUS
58-133
161-199

(STRAIN NIH 47885)

PVNSC_SENDH
NONSTRUCTURAL PROTEIN C
SENDAI VIRUS (STRAIN 6/94)
133-167

PVNSC_SENDZ
NONSTRUCTURAL PROTEIN C
SENDAI VIRUS (STRAIN HARRIS)
133-167

PVNSM_INSV
NONSTRUCTURAL PROTEIN C
SENDAI VIRUS (STRAIN Z)
133-167

PVNST_BUNGE
NONSTRUCTURAL PROTEIN NS-M
IMPATIENS NECROTIC SPOT VIRUS (INSV)
44-102
262-296

PVNST_BUNL7
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS GERMISTON
34-75

PVNST_BUNLC
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS LA CROSSE (ISOLATE L74)
5-39

PVNST_MAGV
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS LA CROSSE
5-39

PVNST_TOSV
NONSTRUCTURAL PROTEIN NS-S
MAGUARI VIRUS
35-69

PVNST_UUK
NONSTRUCTURAL PROTEIN NS-S
TOSCANA VIRUS (TOS)
144-183

PVNUA_PRVKA
NONSTRUCTURAL PROTEIN NS-S
UUKUNIEMI VIRUS (UUK)
139-173

PVNUC_DHVI1
PROBABLE NUCLEAR ANTIGEN
PSEUDORABIES VIRUS (STRAIN KAPLAN) (PRV)
1134-

1175

PVNUC_EBOV
NUCLEOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/61) (DHO)
209-243

PVNUC_IAANA
NUCLEOPROTEIN
EBOLA VIRUS
191-225
227-261
329-369

PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/ANAS ACUTA/PRIMORJE/695/76)

PVNUC_IABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-408

(STRAIN A/ANN ARBOR/6/60)

PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-408

(STRAIN A/BRAZIL/11/78)

PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)

PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/CALIFORNIA/10/78)

PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/CHICKEN/GERMANY/N/49)

PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/CHICKEN/PENNSYLVANIA/1/83)

PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/DUCK/AUSTRALIA/749/80)

PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/DUCK/BEIJING/1/78)

PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
360-408

(STRAIN A/DUCK/CZECHOSLOVAKIA/56)

PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/DUCK/ENGLAND/1/56)

PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/DUCK/ENGLAND/1/62)

PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/DUCK/HONG KONG/7/75)

PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/DUCK/MEMPHIS/928/74

PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/DUCK/MANITOBA/1/53)

PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/DUCK/NEW ZEALAND/31/76)

PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS
96-154
357-408

(STRAIN A/DUCK/UKRAINE/2/60)

PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/ENGLAND/19/55)

PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/FORT MONMOUTH/1/47)

PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS
357-408

(STRAIN A/FORT WARREN/1/50)

PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/FOWL PLAGUE VIRUS/DOBSONA

PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
360-408

(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK

PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
113-154
357-408

(STRAIN A/GREY TEAL/AUSTRALIA/2/79)

PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-408

(STRAIN A/GULL/MARYLAND/5/77)

PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS
96-154
357-409

(STRAIN A/GULL/MARYLAND/704/77)

PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-409

(STRAIN A/GULL/MARYLAND/1824/78)

PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-409

(STRAIN A/GULL/MARYLAND/1815/79)

PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-409

(STRAIN A/GULL/ASTRAKHAN/227/84)

PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-409

(STRAIN A/GULL/MASSACHUSETTS/26/80)

PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-409

(STRAIN A/GULL/MINNESOTA/945/80)

PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/HICKOX/40)

PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/EQUINE/JILLIN/1/89)

PVNUC_IAHMI
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/EQUINE/LONDON/1416/73)

PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154

(STRAIN A/EQUINE/MIAMI/1/63)

PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/HONG KONG/1/68)

PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/HONG/KONG/5/83)

PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS
96-154
357-408

(STRAIN A/EQUINE/PRAGUE/1/56)

PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/KIEV/59/79)

PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/LENINGRAD/54/1)

PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/MALLARD/NEW YORK/6750/78)

PVNUC_IANEJ
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/MINK/SWEDEN/84)

PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/NEW JERSEY/8/76)

PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/NT/60/68)

PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/OHIO/4/83)

PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/PARROT/ULSTER/73)

PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/PUERTO RICO/8/34)

PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/RUDDY TURNSTONE/NEW JERSE

PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SEAL/MASSACHUSETTS/1/80)

PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-408

(STRAIN A/SHEARWATER/AUSTRALIA/72)

PVNUC_IATEI
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/SINGAPORE/1/57)

PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/TEAL/ICELAND/29/80)

PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/TURKEY/MINNESOTA/1661/81)

PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/TURKEY/ONTARIO/7732/66)

PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
360-408

(STRAIN A/TERN/SOUTH AFRICA/61)

PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-405

(STRAIN A/TERN/TURKMENIA/18/72)

PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/TEXAS/1/77)

PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/UDORN/307/72)

PVNUC_IAV16
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-408

(STRAIN A/USSR/90/77)

PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS
357-408

(STRAIN A/VICTORIA/5/68)

PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-409

(STRAIN A/WHALE/MAINE/328/84)

PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/WHALE/PACIFIC OCEAN/19/76)

PVNUC_IAWIS
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/WILSON-SMITH/33)

PVNUC_IAZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/WISCONSIN/3523/88)

PVNUC_IAZ41
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/29/37)

PVNUC_IAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/41/49)

PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/SWINE/CAMBRIDGE/1/35)

PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/SWINE/DANDONG/9/83)

PVNUC_IAZH1
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/GERMANY/2/81)

PVNUC_IAZH3
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
357-409

(STRAIN A/SWINE/HONG KONG/6/76)

PVNUC_IAZH4
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/HONG KONG/126/82)

PVNUC_IAZI1
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/HONG KONG/127/82)

PVNUC_IAZI2
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/IOWA/15/30)

PVNUC_IAZI3
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/IOWA/1976/31)

PVNUC_IAZJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/IOWA/46)

PVNUC_IAZJ2
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/ITALY/437/76)

PVNUC_IAZJ3
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/ITALY/2/79)

PVNUC_IAZJ4
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/ITALY/141/81)

PVNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/ITALY/839/89)

PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/JAMESBURG/42)

PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/MAY/54)

PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/NETHERLANDS/12/85)

PVNUC_IAZON
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/OHIO/23/35)

PVNUC_IAZTE
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/ONTARIO/2/81)

PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/TENNESSEE/24/77)

PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/WISCONSIN/1/57)

PVNUC_INBAA
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408

(STRAIN A/SWINE/WISCONSIN/1/61)

PVNUC_INBAC
NUCLEOPROTEIN
INFLUENZA B VIRUS
75-142
480-514

(STRAIN B/ANN ARBOR/1/86)

PVNUC_INBAD
NUCLEOPROTEIN
INFLUENZA B VIRUS
75-142
480-514

(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE

PVNUC_INBLE
NUCLEOPROTEIN
INFLUENZA B VIRUS
75-145
480-514

(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])

PVNUC_INBSI
NUCLEOPROTEIN
INFLUENZA B VIRUS
75-146
480-514

(STRAIN B/LEE/40)

PVNUC_INCCA
NUCLEOPROTEIN
INFLUENZA B VIRUS
75-142
480-514

(STRAIN B/SINGAPORE/222/79)

PVNUC_MABVM
NUCLEOPROTEIN
INFLUENZA C VIRUS
92-203
406-447

(STRAIN C/CALIFORNIA/78)

PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
173-207
322-407

PVO01_VACCC
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
173-207
322-407

PVO01_VARV
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
102-145
245-279
341-382
581-615

PVOR1_FXMV
PROTEIN O1
VARIOLA VIRUS
102-145
245-279
341-382
581-615

PVOR1_NMV
152 KD PROTEIN
FOXTAIL MOSAIC VIRUS
293-327

PVOR1_PMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS (NMV)
1519-

1575

PVOR1_PVMR
176 KD PROTEIN
PAPAYA MOSAIC POTEXVIRUS (PMV)
1-39
299-337
1474-

1532

PVOR1_PVX
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN) (PVM)
597-638
682-759

PVOR1_PVXCP
165 KD PROTEIN
POTATO VIRUS X (PVX)
516-550

PVOR1_SMYEA
165 KD PROTEIN
POTATO VIRUS X (STRAIN CP) (PVX)
510-547

PVOR1_WCMVM
150 KD PROTEIN
STRAWBERRY MILD YELLOW EDGE-
308-342
931-965

ASSOCIATED VIRUS (SMYE

PVOR1_WCMVO
147 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS
1240-

(STRAIN M) (WCMV)
1289

PVP10_NPVAC
147 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS
1240-

(STRAIN O) (WCMV)
1289

PVP10_NPVOP
P10 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
7-41

POLYHEDROSIS VIRUS (

PVP10_RBSDV
P10 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
7-50

POLYHEDROSIS VIRUS

PVP10_RGDV
PROTEIN S10
RICE BLACK STREAKED DWARF VIRUS
339-382
395-429
506-556

(RBSDV)

PVP10_WTV
NONSTRUCTURAL PROTEIN PNS10
RICE GALL DWARF VIRUS (RGDV)
186-273

PVP11_RDV
NONSTRUCTURAL PROTEIN PNS10
WOUND TUMOR VIRUS (WTV)
220-254

PVP11_WTV
NONSTRUCTURAL PROTEIN PNS11
RICE DWARF VIRUS (RDV)
25-80
273-314

PVP12_RDV
NONSTRUCTURAL PROTEIN PNS11
WOUND TUMOR VIRUS (WTV)
16-74

PVP12_WTV
NONSTRUCTURAL PROTEIN P11
RICE DWARF VIRUS (RDV))
140-181

PVP18_WTVNJ
NONSTRUCTURAL PROTEIN PNS12
WOUND TUMOR VIRUS (WTV)
68-108

PVP19_HSVEB
NONSTRUCTURAL PROTEIN PNS12
WOUND TUMOR VIRUS (STRAIN NJ)
68-108

(WTV)

PVP23_HCMVA
CAPSID ASSEMBLY AND DNA MATURATION
EQUINE HERPESVIRUS TYPE 1
189-231

PROTE
(STRAIN AB4P) (EHV-1)

PVP23_HSV6U
PROBABLE CAPSID PROTEIN VP23
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
41-82
146-180

PVP24_EBOV
PROBABLE CAPSID PROTEIN VP23
HERPES SIMPLEX VIRUS
47-81

(TYPE 6/STRAIN UGANDA-1102)

PVP26_HSVEB
MEMBRANE-ASSOCIATED STRUCTURAL
EBOLA VIRUS
166-200

PROTEIN V

PVP26_HSVSA
CAPSID PROTEIN VP26
EQUINE HERPESVIRUS TYPE 1
36-77

(STRAIN AB4P) (EHV-1)

PVP26_NPVOP
CAPSID PROTEIN VP26
HERPESVIRUS SAIMIRI (STRAIN 11)
41-78

PVP26_VZVD
P26 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
118-159

POLYHEDROSIS VIRUS

PVP2_AHSV4
CAPSID PROTEIN VP26
VARICELLA-ZOSTER VIRUS
47-81

(STRAIN DUMAS) (VZV)

PVP2_BTV10
OUTER CAPSID PROTEIN VP2
AFRICAN HORSE SICKNESS VIRUS
136-188
270-304
410-465
614-662
684-720
976-

(SEROTYPE 4/STRAIN VACCI

1056

PVP2_BTV11
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS
168-225

(SEROTYPE 10/ISOLATE USA)

PVP2_BTV17
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS
77-111
559-593

(SEROTYPE 11/ISOLATE USA)

PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS
77-111
168-209

(SEROTYPE 17/ISOLATE USA)

PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS
119-153
576-610
668-702

(SEROTYPE 1/ISOLATE SOUTH AFRICA)

PVP2_ROTBR
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
72-106
247-301
405-453
461-495
895-929

(SEROTYPE 1) (EHDV

PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
2-94
482-516
523-557
607-655
675-754

PVP2_ROTHW
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
2-94
483-517
524-558
608-656
676-755

PVP2_ROTPC
RNA-BINDING PROTEIN VP2
HUMAN ROTAVIRUS
17-97
492-526
533-567
617-658
685-764

(SEROTYPE 1/STRAIN WA)

PVP2_ROTS1
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS
1-50
52-99
194-228
515-551
599-643
705-746

(GROUP C/STRAIN COWDEN)

PVP30_ASFE7
RNA-BINDING PROTEIN VP2
SIMIAN 11 ROTAVIRUS
36-96
483-517
608-656
680-755

(STRAIN SA11)

PVP31_FRG3V
PHOSPHOPROTEIN P30
AFRICAN SWINE FEVER VIRUS
29-89

(STRAIN E-75) (ASFV)

PVP32_ASFB7
EARLY 31 KD PROTEIN
FROG VIRUS 3 (FV3)
227-261

PVP35_EBOV
PHOSPHOPROTEIN P32
AFRICAN SWINE FEVER VIRUS
29-89

(STRAIN BA71V) (ASFV)

PVP35_NPVAC
POLYMERASE COMPLEX PROTEIN VP35
EBOLA VIRUS
80-119

PVP35_NPVBM
EARLY 35 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
54-102

POLYHEDROSIS VIRUS

PVP35_VACCC
EARLY 35 KD PROTEIN
BOMBYX MORI NUCLEAR POLYHEDROSIS
54-102
224-258

VIRUS (BMNPV)

PVP35_VACCP
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN COPENHAGEN)
140-181

PROTEIN P35

PVP35_VACCV
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN L-IVP)
17-51

PROTEIN P35

PVP35_VARV
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN WR)
140-181

PROTEIN P35

PVP3_AHSV4
IMMUNODOMINANT ENVELOPE
VARIOLA VIRUS
141-182

PROTEIN P35

PVP3_BTV10
VP3 CORE PROTEIN
AFRICAN HORSE SICKNESS VIRUS
173-214
240-274
667-704

(SEROTYPE 4/STRAIN VACCI

PVP3_BTV17
VP3 CORE PROTEIN
BLUETONGUE VIRUS
214-255
853-894

(SEROTYPE 10/ISOLATE USA)

PVP3_BTV1A
VP3 CORE PROTEIN
BLUETONGUE VIRUS
214-255
853-894

(SEROTYPE 17/ISOLATE USA)

PVP3_EHDV1
VP3 CORE PROTEIN
BLUETONGUE VIRUS
214-255
853-894

(SEROTYPE 1/ISOLATE AUSTRALIA)

PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
208-246
798-832
851-892

(SEROTYPE 1) (EHDV

PVP3_GFLV
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
208-246
735-770
798-832
851-892

PVP3_RDV
P3 PROTEIN
GRAPEVINE FANLEAF VIRUS (GFLV)
96-133

PVP3_ROTPC
MAJOR 114 KD STRUCTURAL PROTEIN
RICE DWARF VIRUS (RDV)
299-337
817-872

PVP3_ROTS1
INNER CORE PROTEIN VP3
PORCINE ROTAVIRUS
24-58
229-263
329-395
406-446
640-688

(GROUP C/STRAIN COWDEN)

PVP40_EBV
INNER CORE PROTEIN VP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
26-76
244-278
331-365
415-492
662-696

PVP40_HSV11
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS
433-467

(STRAIN B95-8) (HUMAN HERPESVIRUS 4)

PVP40_HSVEB
CAPSID PROTEIN P40
HERPES SIMPLEX VIRUS
206-257
599-633

(TYPE 1/STRAIN 17)

PVP40_ILTVT
CAPSID PROTEIN P40
EQUINE HERPESVIRUS TYPE 1
180-245

(STRAIN AB4P) (EHV-1)

PVP40_SCMVC
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS
1-35
509-557

(STRAIN THORNE V88

PVP40_VZVD
CAPSID PROTEIN P40
SIMIAN CYTOMEGALOVIRUS
457-498

(STRAIN COLBURN)

PVP41_NPVAC
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS
167-246
486-522

(STRAIN DUMAS) (VZV)

PVP41_ROTS1
STRUCTURAL GLYCOPROTEIN GP41
AUTOGRAPHA CALIFORNICA NUCLEAR
132-166

POLYHEDROSIS VIRUS (

PVP42_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
1-35
484-518
528-630

PVP4A_VACCC
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
1-35
237-518
531-646

PVP4A_VACCV
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
355-359
718-763
794-828
857-891

PVP4A_VARV
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN WR)
262-296
355-359
718-763
794-828
857-891

PVP4B_FOWPV
MAJOR CORE PROTEIN P4A PRECURSOR
VARIOLA VIRUS
355-389
719-764
795-829
858-892

PVP4B_VACCC
MAJOR CORE PROTEIN P4B PRECURSOR
FOWLPOX VIRUS
131-172
296-330

PVP4B_VACCV
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
3-37
125-163
249-283

PVP4B_VARV
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN WR)
3-37
125-163
249-283

PVP4_BTV10
MAJOR CORE PROTEIN P4B PRECURSOR
VARIOLA VIRUS
3-37
125-163
249-283

PVP4_BTV11
VP4 CORE PROTEIN
BLUETONGUE VIRUS
579-617
619-653

(SEROTYPE 10/ISOLATE USA)

PVP4_BTV13
VP4 CORE PROTEIN
BLUETONGUE VIRUS
569-607
609-643

(SEROTYPE 11/ISOLATE USA)

PVP4_BTV2A
VP4 CORE PROTEIN
BLUETONGUE VIRUS
569-607
609-643

(SEROTYPE 13/ISOLATE USA)

PVP4_NCDV
VP4 CORE PROTEIN
BLUETONGUE VIRUS
569-607
609-643

(SEROTYPE 2/ISOLATE USA)

PVP4_RDV
OUTER CAPSID PROTEIN VP4
NEBRASKA CALF DIARRHEA VIRUS
484-518
528-630

(STRAIN NCDV-LINCOLN)

PVP4_ROTB4
NONSTRUCTURAL PROTEIN PNS4
RICE DWARF VIRUS (RDV)
388-437
444-478
627-679

PVP4_ROTBC
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS
1-35
112-146
338-379
484-518
528-653

(SEROTYPE 6/STRAIN B641)

PVP4_ROTBU
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS
1-35
484-518
528-630

(STRAIN C486)

PVP4_ROTEH
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS
1-35
112-146
338-379
484-518
528-653

(STRAIN UK)

PVP4_ROTG1
OUTER CAPSID PROTEIN VP4
EQUINE ROTAVIRUS
1-35
112-146
227-274
345-379
484-518
528-653

(STRAIN H-2)

PVP4_ROTH1
OUTER CAPSID PROTEIN VP4
ROTAVIRUS (GROUP B/STRAIN IDIR)
117-151
476-519

PVP4_ROTH5
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
236-273
337-378
483-517
530-645

(SEROTYPE 1/STRAIN 1076)

PVP4_ROTH6
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
236-273
337-378
483-517
527-652

(SEROTYPE 2/STRAIN RV-5)

PVP4_ROTHD
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
112-146
237-274
338-379
484-518
531-646

(SEROTYPE 1/STRAIN 69M)

PVP4_ROTHJ
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
236-273
337-378
483-517
527-652

(SEROTYPE 2/STRAIN DS1)

PVP4_ROTHK
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
237-274
345-379
484-518
528-588

(STRAIN K8)

PVP4_ROTHL
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
337-378
483-517
527-652

(STRAIN KU)

PVP4_ROTHM
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
236-273
337-378
483-517
527-652

(STRAIN L26)

PVP4_ROTHN
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
337-378
483-517
530-645

(SEROTYPE 1/STRAIN M37)

PVP4_ROTHP
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
237-274
338-379
484-518
531-645

(SEROTYPE 3/STRAIN MCN13)

PVP4_ROTHR
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
236-273
337-378
483-517
527-652

(SEROTYPE 3/STRAIN P)

PVP4_ROTHT
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-38
91-146
227-274

(SEROTYPE 3/STRAIN RRV)

PVP4_ROTHV
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
236-273
337-378
483-517
530-644

(SEROTYPE 4/STRAIN ST. THOMAS 3)

PVP4_ROTHW
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
237-273
344-378
483-517
527-652

(SEROTYPE 4/STRAIN VA70

PVP4_ROTP5
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
1-35
237-273
344-378
483-517
527-652

(SEROTYPE 1/STRAIN WA)

PVP4_ROTPC
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS
112-146
484-518
528-629

(SEROTYPE 5/STRAIN OSU)

PVP4_ROTPG
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS
6-40
127-161
241-278
293-334
580-614

(GROUP C/STRAIN COWDEN)

PVP4_ROTPY
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS
1-35
236-273
337-378
483-517
530-564
569-638

(STRAIN GOTTFRIED)

PVP4_ROTRH
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS
1-35
112-146
237-274
484-518
528-629

(STRAIN YM)

PVP4_RPTSF
OUTER CAPSID PROTEIN VP4
RHESUS ROTAVIRUS
1-38
112-146
237-274
338-379
484-522
531-646

PVP4_ROTSS
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS
1-35
484-518
528-630

(STRAIN SA11-FEM)

PVP4_WTV
DE OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS
1-35
237-274
345-379
484-518
531-646

(STRAIN SA11-SEM)

PVP5_AHSV4
NONSTRUCTURAL PROTEIN PNS4
WOUND TUMOR VIRUS (WTV)
28-62
565-621

PVP5_BRD
OUTER CAPSID PROTEIN VP5
AFRICAN HORSE SICKNESS VIRUS
7-58
113-229

(SEROTYPE 4/STRAIN VACCI

PVP5_BTV10
OUTER CAPSID PROTEIN VP5
BROADHAVEN VIRUS (BRD)
45-86
98-226

PVP5_BTV11
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
92-150
154-222
404-438

(SEROTYPE 10/ISOLATE USA)

PVP5_BTV13
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
92-150
154-222
404-445

(SEROTYPE 11/ISOLATE USA)

PVP5_BTV1A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
154-222
404-438

(SEROTYPE 13/ISOLATE USA)

PVP5_BTV1S
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
92-143
148-222
404-438

(SEROTYPE 1/ISOLATE AUSTRALIA)

PVP5_BTV2A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
92-143
148-222
404-438

(SEROTYPE 1/ISOLATE SOUTH AFRICA)

PVP5_EHDV1
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
92-222
404-438

(SEROTYPE 2/ISOLATE USA)

PVP5_RDV
OUTER CAPSID PROTEIN VP5
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
24-58
92-126
163-233
291-325
399-433

(SEROTYPE 1) (EHDV

PVP5_WTV
OUTER COAT PROTEIN P5
RICE DWARF VIRUS (RDV)
38-86
95-136
550-594

PVP61_BTV10
OUTER COAT PROTEIN P5
WOUND TUMOR VIRUS (WTV)
434-503
547-581
751-798

PVP61_MRDV
VP6 PROTEIN
BLUETONGUE VIRUS
163-215

(SEROTYPE 10/ISOLATE USA)

PVP61_NPVAC
PROBABLE NONSTRUCTURAL 41.0 KD
MAIZE ROUGH DWARF VIRUS (MRDV)
128-202

PROTEIN

PVP62_BTV10
61 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
29-96
351-386

POLYHEDROSIS VIRUS (

PVP64_NPVOP
VP6 PROTEIN
BLUETONGUE VIRUS
47-88
159-207
214-251

(SEROTYPE 10/ISOLATE USA)

PVP67_NPVAC
MAJOR ENVELOPE GLYCOPROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
296-361
431-479

PRECURSOR
POLYHEDROSIS VIRUS

PVP67_NPVGM
MAJOR ENVELOPE GLYCOPROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
44-78
289-364
443-477

PRECURSOR
POLYHEDROSIS VIRUS (

PVP6_BTV11
MAJOR ENVELOPE GLYCOPROTEIN
GALLERIA MELLONELLA NUCLEAR
206-281

POLYHEDROSIS VIRUS (GMN

PVP6_BTV13
VP6 PROTEIN
BLUETONGUE VIRUS
159-211

(SEROTYPE 11/ISOLATE USA)

PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS
159-211

(SEROTYPE 13/ISOLATE USA)

PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS
68-102
159-211

(SEROTYPE 17/ISOLATE USA)

PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS
12-78
163-211

(SEROTYPE 1/ISOLATE SOUTH AFRICA)

PVP6_RDV
VP6 PROTEIN
BLUETONGUE VIRUS
44-78
135-187

(SEROTYPE 2/ISOLATE USA)

PVP6_WTV
STRUCTURAL PROTEIN P6
RICE DWARF VIRUS (RDV)
150-191
296-344
360-401

PVP6_WTVNJ
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (WTV)
144-178
286-334
400-434

PVP74_NPVAC
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS
144-178
286-334

(STRAIN NJ) (WTV)

PVP74_NPVCF
P74 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
387-456

POLYHEDROSIS VIRUS (

PVP75_HSVSA
P74 PROTEIN
CHORISTONEURA FUMIFERANA NUCLEAR
385-453

POLYHEDROSIS VIRU

PVP79_NPVAC
PROBABLE MEMBRANE ANTIGEN 75
HERPESVIRUS SAIMIRI (STRAIN 11)
50-99
163-211
931-984

PVP7_BTV10
79 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
44-78
363-397
406-440

POLYHEDROSIS VIRUS (

PVP7_BTV13
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-228

(SEROTYPE 10/ISOLATE USA), (SEROTYPE

PVP7_BTV17
VP7 CORE PROTEIN
BLUETONGUE VIRUS
201-235

(SEROTYPE 13/ISOLATE USA)

PVP7_BTV1A
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-228

(SEROTYPE 17/ISOLATE USA)

PVP7_BTV1S
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-235

(SEROTYPE 1/ISOLATE AUSTRALIA)

PVP7_BTV2A
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-228

(SEROTYPE 1/ISOLATE SOUTH AFRICA)

PVP7_EHDV1
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-228

(SEROTYPE 2/ISOLATE USA)

PVP7_RDV
VP7 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
16-50
134-178

(SEROTYPE 1) (EHDV

PVP7_WTV
NONSTRUCTURAL PROTEIN PNS7
RICE DWARF VIRUS (RDV)
47-95
172-255

PVP80_NPVAC
NONSTRUCTURAL PROTEIN PNS7
WOUND TUMOR VIRUS (WTV)
47-84
195-243
458-495

PVP87_NPVOP
CAPSID PROTEIN P80
AUTOGRAPHA CALIFORNICA NUCLEAR
7-51
99-142
156-204
221-298

POLYHEDROSIS VIRUS (

PVP8_BTV10
CAPSID PROTEIN P87
ORGYIA PSEUDOTSUGATA MULTICAPSID
80-162
410-451

POLYHEDROSIS VIRUS

PVP8_BTV11
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
54-102
185-219

(SEROTYPE 10/ISOLATE USA)

PVP8_BTV13
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
54-102
185-219

(SEROTYPE 11/ISOLATE USA)

PVP8_BTV17
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
54-102
185-219

(SEROTYPE 13/ISOLATE USA)

PVP8_BTV1A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
54-102
185-219

(SEROTYPE 17/ISOLATE USA)

PVP8_BTV1S
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
54-102
185-219

(SEROTYPE 1/ISOLATE AUSTRALIA)

PVP8_BTV2A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
54-102
185-219

(SEROTYPE 1/ISOLATE SOUTH AFRICA)

PVP8_FOWPV
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
54-102
185-219

(SEROTYPE 2/ISOLATE USA)

PVP9_RDV
STRUCTURAL PROTEIN VP8 PRECURSOR
FOWLPOX VIRUS
193-245

PVP9_WTV
NONSTRUCTURAL PROTEIN PNS9
RICE DWARF VIRUS (RDV)
13-47
186-226

PVP9_WTVNJ
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS (WTV)
140-212

PVPG_BYDV1
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS
140-212

(STRAIN NJ) (WTV)

PVPHE_NPVAC
PUTATIVE GENOME-LINKED PROTEIN
BARLEY YELLOW DWARF VIRUS
25-59

PRECURSOR
(ISOLATE MAV-PS1) (BYDV)

PVPHE_NPVOP
29 KD POLYHEDRAL ENVELOPE PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
146-223

POLYHEDROSIS VIRUS (

PVPR_SIVML
32 KD POLYHEDRAL ENVELOPE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
131-201
206-265

POLYHEDROSIS VIRUS

PVPU_HV1A2
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
78-115

(K78 ISOLATE) (SIV-MAC)

PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-38

(ARV2/SF2 ISOLATE

PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
4-72

(BH10 ISOLATE) (HI

PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-72

(BH8 ISOLATE) (HIV

PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
4-59

(BRAIN ISOLATE) (H

PVPU_HV1C4
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
4-72

(BRU ISOLATE) (HIV

PVPU_HV1EL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-40

(CDC-451 ISOLATE)

PVPU_HV1H2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
6-40

(ELI ISOLATE) (HIV-

PVPU_HV1J3
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-72

(HXB2 ISOLATE) (HI

PVPU_HV1JR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
2-50

(JH3 ISOLATE) (HIV-

PVPU_HV1MA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
4-59

(JRCSF ISOLATE) (H

PVPU_HV1ND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-50

(MAL ISOLATE) (HI

PVPU_HV1PV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
4-40

(NDK ISOLATE) (HI

PVPU_HV1RH
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
4-72

(PV22 ISOLATE) (HI

PVPU_HV1S1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
1-39

(RF/HAT ISOLATE) (

PVPU_HV1Z2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
4-59

(SF162 ISOLATE) (HI

PVPU_SIVCZ
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
6-40

(Z2/CDC-Z34 ISOLAT

PVPX_HV2D2
VPU PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
21-78

(SIV(CPZ)) (CIV)

PVRNA_BSMV
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
42-85

(ISOLATE D205,7) (H

PVS05_ROTS1
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
40-74
857-898

PVS06_ROTBS
NONSTRUCTURAL PROTEIN NCVP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
248-287

PVS06_ROTGA
VP6 PROTEIN
BOVINE ROTAVIRUS
6-44

(GROUP C/STRAIN SHINTOKU)

PVS06_ROTGI
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
69-144

(ADULT DIARRHEA ROTA

PVS06_ROTHC
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
24-58
64-103

PVS06_ROTPC
VP6 PROTEIN
HUMAN ROTAVIRUS
9-43

(GROUP C/STRAIN BRISTOL)

PVS07_ROTBJ
VP6 PROTEIN
PORCINE ROTAVIRUS
9-43

(GROUP C/STRAIN COWDEN)

PVS07_ROTBU
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KN-4)
2-36
282-320

PVS07_ROTP5
NONSTRUCTURAL PROTEIN NCVP3
BOVINE ROTAVIRUS (STRAIN UK)
88-153
199-236

PVS07_ROTS1
NONSTRUCTURAL PROTEIN NCVP3
PORCINE ROTAVIRUS
88-162
202-236

(SEROTYPE 5/STRAIN OSU)

PVS08_ROTBU
NONSTRUCTURAL PROTEIN NCVP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
88-153
199-236

PVS08_ROTS1
NONSTRUCTURAL PROTEIN NS2/VP9
BOVINE ROTAVIRUS (STRAIN UK)
2-70
75-119
160-226

PVS09_ROTB4
NONSTRUCTURAL PROTEIN NCVP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
2-46
144-212
217-255

PVS09_ROTB5
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS
2-54
282-320

(SEROTYPE 6/STRAIN B641)

PVS09_ROTB6
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A5)
2-43
282-320

PVS09_ROTBA
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS
2-54
282-320

(SEROTYPE 6/STRAIN 61A)

PVS09_ROTBB
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A44)
2-54
282-320

PVS09_ROTBK
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS
2-54
282-320

(SEROTYPE 10/STRAIN B223)

PVS09_ROTBN
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KK3)
2-54
282-320

PVS09_ROTBT
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN NCDV)
2-54
282-320

PVS09_ROTBU
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS
2-43
282-320

(SEROTYPE 1/STRAIN T449)

PVS09_ROTC7
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN UK)
2-54
282-320

PVS09_ROTEL
GLYCOPROTEIN VP7
CHICKEN ROTAVIRUS A
285-326

(SEROTYPE 7/STRAIN CH2)

PVS09_ROTGA
GLYCOPROTEIN VP7
EQUINE ROTAVIRUS (STRAIN L338)
282-320

PVS09_ROTGI
GLYCOPROTEIN VP7 PRECURSOR
ROTAVIRUS (GROUP B/STRAIN ADRV)
43-77

(ADULT DIARRHEA ROTA

PVS09_ROTH4
GLYCOPROTEIN VP7 PRECURSOR
ROTAVIRUS (GROUP B/STRAIN IDIR)
45-79

PVS09_ROTH9
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
2-43
282-320

(SEROTYPE 4/STRAIN RV-4)

PVS09_ROTHA
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320

(SEROTYPE G/STRAIN RK9)

PVS09_ROTHB
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320

(SEROTYPE 2/STRAIN HU5)

PVS09_ROTHD
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
2-43
282-320

(SEROTYPE G/STRAIN B37)

PVS09_ROTHH
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320

(SEROTYPE 2/STRAIN DS1)

PVS09_ROTHL
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320

(SEROTYPE 2/STRAIN HN126)

PVS09_ROTHM
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (STRAIN L26)
1-35
282-320

PVS09_ROTHO
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
2-43
282-320

(SEROTYPE 1/STRAIN M37)

PVS09_ROTHP
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
2-43
282-320

(SEROTYPE 1/STRAIN MO AND STRAIN D)

PVS09_ROTHR
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320

(SEROTYPE 3/STRAIN P)

PVS09_ROTHS
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320

(SEROTYPE 3/STRAIN RRV)

PVS09_ROTHT
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320

(SEROTYPE 2/STRAIN S2)

PVS09_ROTHV
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
18-56
208-242
282-320

(SEROTYPE 4/STRAIN ST. THOMAS 3)

PVS09_ROTHW
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
18-56
208-242
282-320

(SEROTYPE 4/STRAIN VA70)

PVS09_ROTP2
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
2-43
282-320

(SEROTYPE 1/STRAIN WA)

PVS09_ROTP3
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
282-320

(SEROTYPE 3/STRAIN AT/76)

PVS09_ROTP4
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
282-320

(SEROTYPE 3/STRAIN CRW-8)

PVS09_ROTP5
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
2-56
208-242
282-320

(SEROTYPE 4/STRAIN OSU)

PVS09_ROTP6
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
282-320

(SEROTYPE 5/STRAIN OSU)

PVS09_ROTPB
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
282-320

(SEROTYPE 5/STRAIN TFR-41)

PVS09_ROTPK
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
18-56
208-242
282-320

(SEROTYPE 4/STRAIN BEN-144)

PVS09_ROTPM
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (STRAIN K)
18-56
282-320

PVS09_ROTPY
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
18-56
208-242
282-320

(SEROTYPE 4/STRAIN BMI-1)

PVS09_ROTRH
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (STRAIN YM)
1-35
282-320

PVS09_ROTS1
GLYCOPROTEIN VP7
RHESUS ROTAVIRUS
282-320

PVS10_ROTBN
GLYCOPROTEIN VP7
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
282-320

PVS10_ROTBS
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN NCDV)
73-161

PVS10_ROTBU
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS
17-58

(GROUP C/STRAIN SHINTOKU)

PVS10_ROTH2
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN UK)
73-161

PVS10_ROTH7
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A28)
73-162

PVS10_ROTH8
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/CLONE 2)
73-162

PVS10_ROTHC
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/CLONE 6)
73-162

PVS10_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
121-158

(GROUP C/STRAIN BRISTOL)

PVS10_ROTS1
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS
73-136

(SEROTYPE 1/STRAIN WA)

PVS11_ROTGA
NONSTRUCTURAL GLYCOPROTEIN NCVP5
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
73-162

PVS11_ROTGI
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
24-65
96-130

(ADULT DIARRHEA ROTA

PVS11_ROTH5
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
9-68

PVS11_ROTH6
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
100-145

(SEROTYPE 2/STRAIN RV-5)

PVS11_ROTHB
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
107-144

(SEROTYPE 1/STRAIN 69M)

PVS11_ROTHD
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
107-144

(SEROTYPE G/STRAIN B37)

PVS11_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
111-145

(SEROTYPE 2/STRAIN DS1)

PVS11_ROTS1
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
111-145

(SEROTYPE 1/STRAIN WA)

PVS48_TBRVC
MINOR OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
111-145

PVSH_MUMP1
SATELLITE RNA 48 KD PROTEIN
TOMATO BLACK RING VIRUS
217-265

(STRAIN C) (TBRV)

PVSH_MUMP2
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN SBL-1),
9-46

AND MUMPS VIRUS (STRAIN SBL)

PVSH_MUMP4
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN EDINGBURGH 2),
13-47

AND (STRAIN EDINGB

PVSH_MUMPA
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN EDINGBURGH 4)
13-47

PVSH_MUMPB
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MATSUYAMA)
13-51

PVSH_MUMPE
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BELFAST)
13-52

PVSH_MUMPJ
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN ENDERS)
9-46

PVSH_MUMPK
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN JERYL-LYNN)
9-46

PVSH_MUMPL
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN KILHAM)
9-51

PVSH_MUMPM
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BRISTOL 1)
13-55

PVSH_MUMPT
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
17-51

PVSH_MUMPU
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN TAKAHASHI)
13-47

PVSI1_REOVD
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS
13-47

(STRAIN URABE VACCINE AM9)

PVSI1_REOVJ
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 3/STRAIN DEARING)
8-122
127-175
222-259

PVSI1_REOVL
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 2/STRAIN D5/JONES)
1-178

PVSI2_REOVD
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 1/STRAIN LANG)
3-107
112-198

PVSI2_REOVL
SIGMA 2 PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
350-384

PVSIS_REOVD
SIGMA 2 PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
350-384

PVSIS_REOVJ
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
85-119

PVST2_HEVBU
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
7-45

PVST2_HEVME
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS E VIRUS (STRAIN BURMA) (HEV)
318-352

PVST2_HEVMY
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS E VIRUS (STRAIN MEXICO) (HEV)
317-351

PVST2_HEVPA
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS E VIRUS (STRAIN MYANMAR) (HEV)
318-352

PVST2_HEVRH
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS E VIRUS (STRAIN PAKISTAN) (HEV)
318-352

PVT3A_CAPVI
STRUCTURAL PROTEIN 2
HEPATITIS E VIRUS (ISOLATE RHESUS) (HEV)
186-220

PVT4_CAPVI
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
120-158

PVT4_CAPVK
T4 PROTEIN
CAPRIPOXVIRUS (STRAIN INS-1)
86-120

PVTER_EBV
T4 PROTEIN
CAPRIPOXVIRUS (STRAIN KS-1)
86-120

PVTER_HCMVA
PROBABLE DNA PACKAGING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
235-290
595-629

(HUMAN HERPESVIRUS 4)

PVTER_HSV6U
PROBABLE DNA PACKAGING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
417-451
617-658

PVTER_HSVEB
PROBABLE DNA PACKAGING PROTEIN
HERPES SIMPLEX VIRUS
468-502

(TYPE 6/STRAIN UGANDA-1102)

PVTER_HSVI1
PROBABLE DNA PACKAGING PROTEIN
EQUINE HERPESVIRUS TYPE 1
11-45

(STRAIN AB4P) (EHV-1)

PVTER_HSVSA
PROBABLE DNA PACKAGING PROTEIN
ICTALURID HERPESVIRUS 1
98-136
698-744

(CHANNEL CATFISH VIRUS) (CCV)

PVTER_VZVD
PROBABLE DNA PACKAGING PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
226-267

PVV_PI4HA
PROBABLE DNA PACKAGING PROTEIN
VARICELLA-ZOSTER VIRUS
588-622

(STRAIN DUMAS) (VZV)

PVY1_SEND6
V PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS
4-38

(STRAIN TOSHIBA) (PIV-4A)

PY101_SSV1
Y1 PROTEIN
SENDAI VIRUS (STRAIN 6/94)
104-138

PY108_SSV1
HYPOTHETICAL 10.1 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARITCLE SSV1
16-80

PY110_SSV1
HYPOTHETICAL 10.8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARITCLE SSV1
4-65

PY119_SSV1
HYPOTHETICAL 11.0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARITCLE SSV1
55-59

PY11K_TYDVA
HYPOTHETICAL 11.9 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARITCLE SSV1
30-96

PY12K_FCVC6
HYPOTHETICAL 11.2 KD PROTEIN
TOBACCO YELLOW DWARF VIRUS
53-87

(STRAIN AUSTRALIA) (TYDV)

PY12K_FCVF9
HYPOTHETICAL 12.2 KD PROTEIN
FELINE CALICIVIRUS
4-38

IN COAT PROTEIN
(STRAIN CF1/68 FIV) (FCV)

PY12K_RHDV
HYPOTHETICAL 12.1 KD PROTEIN
FELINE CALICIVIRUS
4-38

IN COAT PROTEIN
(STRAIN F9) (FCV)

PY12K_RHDV3
HYPOTHETICAL 12.7 KD PROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
13-50

IN COAT PROTEI
(RHDV)

PY13K_CLVK
HYPOTHETICAL 12.7 KD PROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
13-50

IN COAT PROTEIN
(STRAIN V-351) (RHDV)

PY13K_CLVN
HYPOTHETICAL 13.1 KD PROTEIN
CASSAVA LATENT VIRUS
40-77

(STRAIN WEST KENYAN 844)

PY13K_NPVOP
HYPOTHETICAL 13.1 KD PROTEIN
CASSAVA LATENT VIRUS
43-77

(STRAIN NIGERIAN)

PY13K_SSV1
HYPOTHETICAL 14.5 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
16-67

IN 39 KD PROTEIN
POLYHEDROSIS VIRUS

PY14K_SSV1
HYPOTHETICAL 13.2 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
2-36
62-96

PY168_ADE02
HYPOTHETICAL 13.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
5-39

PY16K_SSV1
HYPOTHETICAL PROTEIN C-168
HUMAN ADENOVIRUS TYPE 2
119-166

PY17K_SSV1
HYPOTHETICAL 15.6 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
1-35
77-111

PY18K_SSV1
HYPOTHETICAL 17.8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
1-45
119-153

PY20K_SSV1
HYPOTHETICAL 18.0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
102-136

PY28K_SSV1
HYPOTHETICAL 20.4 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
73-107

PY2_SOCMV
HYPOTHETICAL 28.5 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
127-180

PY31K_SSV1
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE VIRUS
117-154

PY32K_SSV1
HYPOTHETICAL 31.5 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
7-97
100-141

PY38K_NPVAC
HYPOTHETICAL 31.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
230-278

PY3_SOCMV
HYPOTHETICAL 37.7 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
133-241

POLYHEDROSIS VIRUS (

PY5K9_SSV1
HYPOTHETICAL PROTEIN 3
SOYBEAN CHLOROTIC MOTTLE VIRUS
115-149

PY7_SOCMV
HYPOTHETICAL 5.9 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
1-51

PY85K_SSV1
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE VIRUS
56-94

PY8_SOCMV
HYPOTHETICAL 85.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
81-125
503-537
546-587
658-700

PYB01_FOWPM
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE VIRUS
46-83

PYB04_FOWPM
HYPOTHETICAL BAMHI-ORF1 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
74-115
184-221

PYB05_FOWPM
HYPOTHETICAL BAMHI-ORF4 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
29-70

PYB06_FOWPM
HYPOTHETICAL BAMHI-ORF5 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
3-37
61-95

PYB07_FOWPM
HYPOTHETICAL BAMHI-ORF6 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
115-149

PYB10_FOWPM
HYPOTHETICAL BAMHI-ORF7 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
344-378

PYB12_FOWPM
HYPOTHETICAL BAMHI-ORF10 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
162-253

PYB13_FOWPM
HYPOTHETICAL BAMHI-ORF12 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
4-47
117-153

PYBL2_EBV
HYPOTHETICAL BAMHI-ORF13 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
122-163

PYDH1_HSVS7
HYPOTHETICAL BBLF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
458-506

(HUMAN HERPESVIRUS 4)

PYF30_FOWP1
HYPOTHETICAL 24.1 KD PROTEIN IN
HERPESVIRUS SAIMIRI (STRAIN 484-77)
147-188

DHFR 3′REGION

PYGA1_HSVMB
HYPOTHETICAL 30.9 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
160-204

PYGA1_HSVMM
HYPOTHETICAL 23.6 KD PROTEIN
MAREK'S DISEASE HERPESVIRUS
176-211

IN GLYCOPROTEI
(STRAIN BC-1) (MDHV)

PYH22_VACCV
HYPOTHETICAL 23.6 KD PROTEIN
MAREK'S DISEASE HERPESVIRUS
176-211

IN GLYCOPROTEI
(STRAIN MD5) (MDHV)

PYHR3_VACCV
HYPOTHETICAL 21.7 KD HINDIII-C
VACCINIA VIRUS (STRAIN WR)
34-78
95-139

PROTEIN

PYKR4_EBV
HYPOTHETICAL HOST RANGE 27.4 KD
VACCINIA VIRUS (STRAIN WR)
24-58
181-222

PROTEIN

PYL15_ADE41
HYPOTHETICAL BKRF4 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
16-58

(HUMAN HERPESVIRUS 4)

PYLR2_EBV
HYPOTHETICAL 12.4 KD PROTEIN IN
HUMAN ADENOVIRUS TYPE 41
39-81

33 KD PROTEIN

PYOR1_COYMV
HYPOTHETICAL BLRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
64-125

(HUMAN HERPESVIRUS 4)

PYOR2_COYMV
HYPOTHETICAL 23 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
94-147

(COYMV)

PYOR2_LELV
HYPOTHETICAL 15 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
33-77

(COYMV)

PYOR3_TTV1
HYPOTHETICAL 28.4 KD PROTEIN
LELYSTAD VIRUS (LV)
100-134

PYOR5_ADEG1
HYPOTHETICAL 6.9 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
14-54

(STRAIN KRA1) (TTV1)

PYORA_TTV1
HYPOTHETICAL 31.5 KD PROTEIN
AVIAN ADENOVIRUS GAL1
70-127

(STRAIN PHELPS) (FOWL ADENOVIRU

PYORD_TTV1
HYPOTHETICAL 8.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
21-67

(STRAIN KRA1) (TTV1)

PYORE_TTV1
HYPOTHETICAL 15.4 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
6-51
89-130

(STRAIN KRA1) (TTV1)

PYORL_TTV1
HYPOTHETICAL 15.3 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
78-122

(STRAIN KRA1) (TTV1)

PYORQ_TTV1
HYPOTHETICAL 26.8 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
1-45

(STRAIN KRA1) (TTV1)

PYORT_TTV1
HYPOTHETICAL 7.3 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
1-43

(STRAIN KRA1) (TTV1)

PYORW_TTV1
HYPOTHETICAL 38.7 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
4-38
281-315

(STRAIN KRA1) (TTV1)

PYP12_RTBV
HYPOTHETICAL 12.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
4-89

(STRAIN KRA1) (TTV1)

PYP12_RTBVP
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
33-72

PYP24_RTBV
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
33-72

(ISOLATE PHILIPPINES) (RTB

PYP24_RTBVP
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
51-101
106-157

PYP46_RTBV
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
51-101
106-157

(ISOLATE PHILIPPINES) (RT

PYP46_RTBVP
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
49-111
197-231

PYP63_NPVAC
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
49-111
197-231

(ISOLATE PHILIPPINES) (RT

PYP7A_TNVA
HYPOTHETICAL PROTEIN IN P6.5 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR
32-73

POLYHEDROSIS VIRUS (

PYPOH_NPVAC
HYPOTHETICAL P7A PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN A) (TNV)
1-65

PYPOL_IPNVJ
HYPOTHETICAL 23.6 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
116-153

IN POLYHEDRIN 5
POLYHEDROSIS VIRUS (

PYQ1_AMEPV
HYPOTHETICAL 17.3 KD PROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS
25-66

(SEROTYPE JASPER)

PYQ3_AMEPV
HYPOTHETICAL 7.6 KD PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
9-61

IN TK 5′REGION

PYRF2_HSV6G
HYPOTHETICAL PROTEIN IN TK 3′REGION
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
1-57
62-96
149-183

PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
193-264

PYRF4_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
134-175

PYRP2_IRV6
HYPOTHETICAL PROTEIN RF4
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
252-286
404-442

PYRR1_EBV
REPETITIVE PROTEIN ORF2
CHILO IRIDESCENT VIRUS (CIV)
1-45

(INSECT IRIDESCENT VIRUS TYP

PYSR1_EBV
HYPOTHETICAL BRRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
96-130

(HUMAN HERPESVIRUS 4)

PYTR1_EBV
HYPOTHETICAL BSRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
98-177

(HUMAN HERPESVIRUS 4)

PYUB2_NPVOP
HYPOTHETICAL BTRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
390-424

(HUMAN HERPESVIRUS 4)

PYVAC_VACCC
HYPOTHETICAL 24.0 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
25-69
170-204

IN UBIQUITIN 3′RE
POLYHEDROSIS VIRUS

PYVAG_VACCC
HYPOTHETICAL 14.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
29-63

PYVAH_VACCC
HYPOTHETICAL 9.3 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
3-37

PYVAN_VACCC
HYPOTHETICAL 14.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
78-112

PYVBH_VACCC
HYPOTHETICAL 7.9 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
23-57

PYVCC_VACCC
HYPOTHETICAL 7.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
5-39

PYVDB_VACCC
HYPOTHETICAL 9.2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
11-48

PYVDB_VACCV
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
29-80

PYVDC_VACCV
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
46-80

PYVGB_VACCC
HYPOTHETICAL 7.3 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
7-41

PYVHA_VACCC
HYPOTHETICAL 8.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
10-51

HYPOTHETICAL 8.1 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
9-53

TABLE VI

107 X 178 X 4 SEARCH MOTIF RESULTS SUMMARY

FOR ALL VIRAL (NON-BACTERIOPHAGE) PROTEINS

PCGENE
107x178x4
All Viruses (no bacteriophages)

FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9

P194K_TRVSY
POT 194 KD PRO
TOBACCO RATTLE VIRUS (STRAIN SYM)
387-414
1087-
1142-

1114
1169

PAANT_HDVAM
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133

PAANT_HDVD3
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133

PAANT_HDVTT
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133

PAANT_HDVM2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133

PAANT_HDVS1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
16-43
106-133

PAANT_HDVS2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
16-43
106-133

PAANT_HDVWO
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133

PAT3H_FOWPM
ANTITHROMBIN-III HOMOLOG
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
72-106

PAT11_VACCV
94 KD A-TYPE INCLUSION PRO
VACCINIA VIRUS (STRAIN WR)
14-56
67-94
424-472
570-625

PAT11_VARV
81 KD A-TYPE INCLUSION PRO
VARIOLA VIRUS
67-94
425-504
571-605

PAT12_HSV11
ALPHA TRANS-IND FACTOR 78
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
308-335

KD PRO

PAT12_HSV1F
ALPHA TRANS-IND FACTOR 77
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
308-335

KD PRO

PAT12_HSVEB
ALPHA TRANS-IND FACTOR 82
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
294-321

KD PRO

PATIN_HSVEB
ALPHA TRANS-IND PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
255-289

PATI_COWPX
A-TYPE INCLUSION PROTEIN
COWPOX VIRUS
14-56
67-94
426-498
572-620
837-841
934-990
1234-

1261

PBZLF_EBV
BZLF1 TRANS-ACTIVATOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
193-220

PROTEIN

PCAHH_VACCC
CELL SURFACE-BINDING
VACCINIA VIRUS (STRAIN COPENHAGEN)
84-111
117-144

PROTEIN

PCAHH_VACCV
CELL SURFACE-BINDING
VACCINIA VIRUS (STRAIN WR)
84-111
117-144

PROTEIN

PCAHH_VARV
CELL SURFACE-BINDING
VARIOLA VIRUS
84-111
117-144

PROTEIN

PCELF_HSVEB
CELL FUSION PROTEIN
EQUINE HERPESVIRUS TYPE 1
312-339

PRECURSOR
(STRAINS AB4P and Ky A)

PCGH2_HSVSA
CYCLIN HOMOLOG
HERPESVIRUS SAIMIRI (STRAIN 11)
127-154

PCOA1_POVHA
COAT PROTEIN VP1
HAMSTER POLYOMAVIRUS
159-186

PCOA2_BFDV
COAT PROTEIN VP2
BUDGERIGAR FLEDGLING DISEASE VIRUS
160-187

PCOA2_POVBO
COAT PROTEIN VP2
BOVINE POLYOMAVIRUS
49-76

PCOA2-POVJC
COAT PROTEIN VP2
POLYOMAVIRUS JC
37-64

PCOA2_POVLY
COAT PROTEIN VP2
LYMPHOTROPIC POLYOMAVIRUS
170-204

PCOA2_POVMK
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS (STRAIN KILHAM)
22-49

PCOA2_SV40
COAT PROTEIN VP2
SIMIAN VIRUS 40
178-205

PCOA3_AAV2
PROBABLE COAT PROTEIN 3
ADENO-ASSOCIATED VIRUS 2
120-147

PCOA3-TTV1
COAT PROTEIN TP3
THERMOPROTEUS TENAS VIRUS 1 (STRAIN KRA1)
3-30

PCOAT_ADVG
COAT PROTEIN VP1
ALEUTIAN MINK DISEASE PARVOVIRUS
194-221

(STRAIN G)

PCOAT_BLRV
COAT PROTEIN
BEAN LEAFROLL VIRUS
96-123

PCOAT_CAMVC
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-184)
63-90
193-220
461-488

PCOAT_CAMVD
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
64-91
194-221

PCOAT_CAMVE
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
63-90
193-220

PCOAT_CAMVN
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
63-90
192-219
461-488

PCOAT_CAMVS
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
64-91
194-221

STRASBOURG)

PCOAT_CARMV
COAT PROTEIN
CARNATION MOTTLE VIRUS
16-43

PCOAT_CHVP1
MAJOR CAPSID PROTEIN

PARAMECIUM BURSARIA CHLORELLA VIRUS 1
41-86

PCOAT_CNV
COAT PROTEIN
CUCUMBER NECROSIS VIRUS
328-362

PCOAT_CSMV
COAT PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
62-89

PCOAT_CYMV
COAT PROTEIN
CLOVER YELLOW MOSAIC VIRUS
170-200

PCOAT_FCVC6
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN CFI/68 FIV)
566-600

PCOAT_FCVF4
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN JAPANESE F4)
516-543
566-600

PCOAT_FCVF9
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN F9)
519-546
569-603

PCOAT_FMVD
PROBABLE COAT PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
220-247
358-385

PCOAT_LSV
COAT PROTEIN
LILY SYMPTOMLESS VIRUS
32-700
246-273

PCOAT_MISV
COAT PROTEIN
MISCANTHUS STREAK VIRUS
139-166

PCOAT_ORSV
COAT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
106-133

PCOAT_PAVHB
PROBABLE COAT PROTEIN VP1
HUMAN PARVOVIRUS B19
524-551
569-596

PCOAT_POPMV
COAT PROTEIN
POPLAR MOSAIC VIRUS (ISOLATE ATCC PV275)
46-73

PCOAT_SOCMV
COAT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
128-162

PCOAT_TAMV
GENOME POLYPROTEIN
TAMARILLO MOSAIC VIRUS
21-48

PCOAT_TAV
COAT PROTEIN
TOMATO ASPERMY VIRUS
23-50

PCOAT_TBSVB
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS (STRAIN BS-3)
3-30
41-68

PCOAT_TBSVC
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY)
97-134

PCOAT_TCV
COAT PROTEIN
TURNIP CRINKLE VIRUS
232-259

PCOAT_TMGMV
COAT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS
104-131

PCOAT_TMV
COAT PROTEIN
TOBACCO MOSAIC VIRUS (VULGARE)
104-131

PCOAT_TMVCO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN COWPEA)
78-132

PCOAT_TMVDA
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN DAHLEMENSE)
104-131

PCOAT_TMVER
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN ER)
104-131

PCOAT_TMVO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN O AND KOKUBU)
104-131

PCOAT_TMVOM
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN OM)
104-131

PCOAT_TMVTO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
104-131

PCOAT_TNVA
COAT PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN A)
90-117

PCOAT_TRVPS
COAT PROTEIN
TOBACCO RATTLE VIRUS (STRAINS PSG and PLB)
118-145

PCOAT_TYDVA
COAT PROTEIN
TOBACCO YELLOW DWARF VIRUS (STRAIN
10-37

AUSTRALIA)

PCOAT_TYMV
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS
41-68

PCOAT_TYMVA
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS (AUSTRALIAN
41-68

ISOLATE)

PDNB2_ADE07
EARLY E2A DNA-BINDING
HUMAN ADENOVIRUS TYPE 7
46-73

PROTEIN

PDNBI_EBV
MAJOR DNA-BINDING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
997-1004
1041-

1068

PDNBI_HCMVA
MAJOR DNA-BINDING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
437-464

PDNBI_HSVSA
MAJOR DNA-BINDING PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
333-368
512-539

PDNBI_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
584-618

PDNBI_POVJC
DNA-BINDING PROTEIN
POLYOMAVIRUS JC
2-29

PDNBI_SCMVC
MAJOR DNA-BINDING PROTEIN
SIMIAN CYTOMEGALOVIRUS (STRAIN COLBURN)
435-462
532-559

PDNLI_VACCC
DNA LIGASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
104-131
172-199
358-385

PDNLI_VACCV
DNA LIGASE
VACCINIA VIRUS (STRAIN WR)
104-131
172-199
358-385

PDNLI_VARV
DNA LIGASE
VARIOLA VIRUS
104-131
172-199
358-385

PDPOL_ADE12
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 12
403-431

PDPOL_CBEPV
DNA POLYMERASE

CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
23-64
202-240

PDPOL_CHVN2
DNA POLYMERASE
CHLORELLA VIRUS NY-2A
338-365

PDPOL_CHVP1
DNA POLYMERASE
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
338-365

PDPOL_FOWPV
DNA POLYMERASE
FOWLPOX VIRUS
17-51
370-416
621-655
772-799

PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
753-780

PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (BROWN SHANGHAI
5-39

DUCK ISOLATE S5)

PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (STRAIN CHINA)
5-39

PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (WHITE SHANGHAI
5-39
304-331

DUCK ISOLATE S31)

PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS VIRUS
271-325

PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
5-39

PDPOL_HPBVP
DNA POLYMERASE
HEPATITIS B VIRUS
456-483

(SUBTYPE ADW/STRAIN PHILIPPINO/PFDW294)

PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADYW)
443-470

PDPOL_HSVI1
DNA POLYMERASE
ICTALURID HERPESVIRUS 1
328-366
710-737

PDPOL_HSVSA
DNA POLYMERASE
HERPESVIRUS SAIMIRI (STRAIN 11)
625-652

PDPOL_NPVAC
DNA POLYMERASE

AUTOGRAPHA CALIFONICA NUCLEAR
598-643

POLYHEDROSIS VIRUS

PDPOL_NPVLD
DNA POLYMERASE
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
357-384

POLYHEDROSIS VIRUS

PDPOL_VACCC
DNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
770-797

PDPOL_VACCV
DNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
770-797

PDPOL_VARV
DNA POLYMERASE
VARIOLA VIRUS
769-796

PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 1
285-326

PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 59
290-331

PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
212-242
290-331

PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
211-241
289-330

PDPOL_WHV81
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
212-242
290-331

PDTXH_CORBE
DIPHTH TOXIN HOMOLOG
CORYNEPHAGE BETA
516-533

CRM228 PREC

PDTX_CORBE
DIPHTHERIA TOXIN PRECURSOR
CORYNEPHAGE BETA
523-560

PDTX_COROM
DIPHTHERIA TOXIN PRECURSOR
CORYNEPHAGE OMEGA
516-533

PDUT_HSVE4
DEOXYU 5′-TRIPHOSPH
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
90-117

NUCHYDROLASE

PDUT_HSVSA
DEOXYU 5′-TRIPHOSPH
HERPESVIRUS SAIMIRI (STRAIN 11)
179-213

NUCHYDROLASE

PE1BL_ADE07
E1B PROTEIN, LARGE
HUMAN ADENOVIRUS TYPE 7
126-153

T-ANTIGEN

PE1BL_ADE40
E1B PROTEIN, LARGE
HUMAN ADENOVIRUS TYPE 40
136-163

T-ANTIGEN

PE1BS_ADE12
E1B PROTEIN, SMALL
HUMAN ADENOVIRUS TYPE 12
3-30

T-ANTIGEN

PE1BS_ADEM1
E1B PROTEIN, SMALL
MOUSE ADENOVIRUS TYPE 1
122-173

T-ANTIGEN

PE314_ADE02
EARLY E3B 14 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
2-29

PE314_ADE07
EARLY E3 15.3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
21-48

PE320_ADE03
EARLY E3 20.1 KD
HUMAN ADENOVIRUS TYPE 3
5-32
70-100

GLYCOPROTEIN

PE320_ADE35
EARLY E3 20.3 KD
HUMAN ADENOVIRUS TYPE 35
70-107

GLYCOPROTEIN

PE321_ADE35
EARLY E3 20.6 KD
HUMAN ADENOVIRUS TYPE 35
125-161

GLYCOPROTEIN

PE3GL_ADEM1
EARLY E3 17.7 KD
MOUSE ADENOVIRUS TYPE1
38-66

GLYCOPROTEIN

PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN B95-8)
55-82

PEFT1_VARV
EARLY TRANS FACTOR 70 KD
VARIOLA VIRUS
307-341
470-497

SUBUNIT

PENV_AVIRE
ENV POLYPROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
420-468

PENV_AVISN
ENV POLYPROTEIN
AVIAN SPLEEN NECROSIS VIRUS
6-33
426-474

PENV_BAEVM
ENV POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
395-452

PENV_BIV06
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
17-44
544-603
631-695

(ISOLATE 106)

PENV_BIV27
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
17-44
573-632
660-724

(ISOLATE 127)

PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN
304-377

ISOLATE FLK)

PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN
304-377

ISOLATE)

PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN)
304-377

ISOLATE VDM)

PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM
311-377

ISOLATE LB285)

PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM
304-377

ISOLATE LB59)

PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (JAPANESE
304-377

ISOLATE BLV-1)

PENV_CAEVG
ENV POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
165-192

(STRAIN G63)

PENV_EIAV1
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712

(CLONE P3.2-1)

PENV_EIAV2
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-695

(CLONE P3.2-2)

PENV_EIAV3
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712

(CLONE P3.2-3)

PENV_EIAV5
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
669-696

(CLONE P3.2-5)

PENV_EIAV9
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712

(CLONE 1369)

PENV_EIAVC
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712

(CLONE CL22)

PENV_EIAVW
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712

(STRAIN WSU5)

PENV_EIAVY
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712

(ISOLATE WYOMING)

PENV_FENV1
ENV POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECE1
33-60
517-544

PENV_FIVPE
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE
650-680
722-749

PETALUMA)

PENV_FIVSD
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE
639-668
720-747

SAN DIEGO)

PENV_FIVT2
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE
640-679
721-748

TM2)

PENV_FLVC6
ENV POLYPROTEIN
FELINE LEUKEMIA PROVIRUS (CLONE CFE-6)
509-538

PENV_FLVGL
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS (STRAIN A/GLASGOW-1)
490-519

PENV_FLVLB
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS (STRAIN LAMBDA-B1)
510-539

PENV_FLVSA
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS (STRAIN SARMA)
487-516

PENV_FOAMV
ENV POLYPROTEIN
HUMAN SPUMARETROVIRUS
14-41
318-355
866-893

PENV_FSVGA
ENV POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN
510-539

GARDNER-ARNSTEIN)

PENV_FSVGB
ENV POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN GA)
490-519

PENV_FSVSM
ENV POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN SM)
493-522

PENV_GALV
ENV POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
176-203
523-564

PENV_HTL1A
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I
342-376

(STRAIN ATK)

PENV_HTL1C
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I
342-376

(CARIBBEAN ISOLATE)

PENV_HTL1M
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I
342-376

(ISOLATE MT-2)

PENV_HTLV2
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE II
336-370

PENV_HV1A2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
544-592
630-682
790-825

(ARV2/SF2 ISOLATE)

PENV_HV1B1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
631-683
791-818

(BH10 ISOLATE)

PENV_HV1B8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
540-589
626-678
786-813

(BH8 ISOLATE)

PENV_HV1BN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
267-294
338-365
562-590
628-679
787-815

(BRAIN ISOLATE)

PENV_HV1BR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
550-599
636-688
796-823

(BRU ISOLATE)

PENV_HV1C4
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
397-424
557-606
643-695
803-835

(CDC-451 ISOLATE)

PENV_HV1EL
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
255-296
386-413
543-591
628-680

(ELI ISOLATE)

PENV_HV1H2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
631-683
791-818

(HXB2 ISOLATE)

PENV_HV1H3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
631-683
791-818

(HXB3 ISOLATE)

PENV_HV1J3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
350-377
556-605
642-694
802-829

(JH3 ISOLATE)

PENV_HV1JR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
336-363
622-675
783-811

(JRCSF ISOLATE)

PENV_HV1KB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
274-301
555-596
637-677
776-824

(STRAIN KB-1-GP32)

PENV_HV1MA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
547-595
633-707
794-826

(MAL ISOLATE)

PENV_HV1MF
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
543-592
629-681
789-816

(MFA ISOLATE)

PENV_HV1MN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-370
567-595
632-684
791-819

(MN ISOLATE)

PENV_HV1N5
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
326-360

(NEW YORK-5 ISOLATE)

PENV_HV1ND
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
249-290
536-583
621-673
783-813

(NDK ISOLATE)

PENV_HV1OY
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
544-593
630-704
789-820

(OYI ISOLATE)

PENV_HV1PV
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
631-683
791-818

(PV22 ISOLATE)

PENV_HV1RH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
280-307
351-378
554-602
640-692
800-832

(RF/HAT ISOLATE)

PENV_HV1S1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
333-363
536-585
622-674
782-809

(SF162 ISOLATE)

PENV_HV1S3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
541-589
627-679
787-815

(SF33 ISOLATE)

PENV_HV1SC
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
338-365
545-593
631-683

(SC ISOLATE)

PENV_HV1W1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
338-365
545-593
631-683
791-818

(WMJ1 ISOLATE)

PENV_HV1W2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
334-361
536-584
622-674
782-809

(WMJ2 ISOLATE)

PENV_HV1Z2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
255-296
542-591
628-680
790-820

(Z2/CDC-Z34 ISOLATE)

PENV_HV1Z3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
251-292

(ZAIRE 3 ISOLATE)

PENV_HV1Z6
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
256-297
545-593
630-682
792-822

(ZAIRE 6 ISOLATE)

PENV_HV1Z8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
266-307
573-601
634-678
797-828

(Z-84 ISOLATE)

PENV_HV1ZH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
627-666
791-823

(ZAIRE HZ321 ISOLATE)

PENV_HV2BE
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
61-88
532-591
621-648
653-697

(ISOLATE BEN)

PENV_HV2CA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
534-593
623-650
655-699

(ISOLATE CAM2)

PENV_HV2D1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
61-88
523-550
555-582
644-688

(ISOLATE D194)

PENV_HV2G1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
60-87
524-551
556-583
613-640
645-693

(ISOLATE GHANA-1)

PENV_HV2NZ
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
61-88
524-551
556-583
613-640
662-689

(ISOLATE N1H-Z)

PENV_HV2RO
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
58-85
533-592
622-698

(ISOLATE ROD)

PENV_HV2S2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
442-476
527-554
559-586
648-682

(ISOLATE ST/24 1C#2)

PENV_HV2SB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
557-584
614-673

(ISOLATE SBL1SY)

PENV_HV2ST
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
442-476
527--554
559-586
648-692

(ISOLATE ST)

PENV_MCFF
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING MURINE LEUKEMIA
473-512

VIRUS

PENV_MCFF3
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING MURINE LEUKEMIA
488-515

VIRUS (ISOLATE C1-3)

PENV_MLVAV
ENV POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
517-544

PENV_MLVCB
ENV POLYPROTEIN
CAS-BR-E MURINE LEUKEMIA VIRUS
510-539

PENV_MLVF5
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57)
523-553

PENV_MLVFF
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29)
523-553

PENV_MLVFP
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE
523-553

PVC-211)

PENV_MLVHO
ENV POLYPROTEIN
HOMULV MURINE LEUKEMIA VIRUS
510-540

PENV_MLVK1
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA VIRUS
40-81

PENV_MLVMO
ENV POLYPROTEIN
MOLONEY MURINE LEUKEMIA VIRUS
502-543

PENV_MLVRD
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
497-538

PENV_MLVRK
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS (STRAIN
497-538

KAPLAN)

PENV_MMTVB
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
458-485
562-589

PENV_MMTVG
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
458-485
562-589

PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
422-470

PENV_MSVFB
ENV POLYPROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
57-84

PENV_OMVVS
ENV POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
42-69
196-223
780-807

PENV_RMCFV
ENV POLYPROTEIN
RAUSCHER MINK CELL FOCUS-INDUCING VIRUS
487-517

PENV_SFV1
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
14-41
866-901

PENV_SFV3L
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
18-45
319-357
673-700
863-898

PENV_SIVA1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155
269-310
561-588
592-619
652-679
697-724

ISOLATE)

PENV_SIVAG
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3
270-301
566-593
597-624
658-685
703-730

ISOLATE)

PENV_SIVAI
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
257-291
336-372
548-603
634-708

(ISOLATE AGM/CLONE GR1-1)

PENV_SIVAT
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
3-30
268-298
590-617
651-678

(TYO-1 ISOLATE)

PENV_SIVCZ
ENV POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
160-187
253-289
336-366
526-584
627-654

PENV_SIVGB
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
8-35
158-185
589-650
784-816

(ISOLATE GB1)

PENV_SIVM1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
120-150
550-609
671-715

(MM142-83 ISOLATE)

PENV_SIVM2
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
156-215
277-289

(MM251 ISOLATE)

PENV_SIVMK
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
553-608

(K6W ISOLATE)

PENV_SIVML
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
549-608

(K78 ISOLATE)

PENV_SIVS4
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
281-308
553-612
642-669
691-718

(F236/SMH4 ISOLATE)

PENV_SIVSP
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
286-313
554-595
646-722

(PBJ/BC13 ISOLATE)

PENV_SMRVH
ENV POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
400-462

PENV_SRV1
ENV POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
409-471

PENV_VILV
ENV POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
22-62
773-800

PENV_VILV1
ENV POLYPROTEIN
VISNA LENTIVIRUS
22-62
780-807

(STRAIN 1514/CLONE LV1-1KS1)

PENV_VILV2
ENV POLYPROTEIN
VISNA LENTIVIRUS
22-62
782-809

(STRAIN 1514/CLONE LV1-1KS2)

PETF1_FOWP1
EARLY TRANS FACTOR
FOWLPOX VIRUS (STRAIN FP-1)
190-224

70 KD SUBUNIT

PETF1_SFVKA
EARLY TRANS FACTOR
SHOPE FIBROMA VIRUS (STRAIN KASZA)
306-340
469-496
550-587

70 KD SUBUNIT

PETF1_VACCC
EARLY TRANS FACTOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
307-341
470-497

70 KD SUBUNIT

PETF1_VACCV
EARLY TRANS FACTOR
VACCINIA VIRUS (STRAIN WR)
307-341
470-497

70 KD SUBUNIT

PETF2_VACCC
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN COPENHAGEN)
66-97
174-210
302-332

FACTOR 82

PETF2_VARV
EARLY TRANSCRIPTION
VARIOLA VIRUS
66-97
174-210
302-332

FACTOR 82

PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
109-139

PFIB2_ADE40
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
179-237

PFIB2_ADE41
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
178-216

PFIBP_ADE02
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 2
308-335

PFIBP_ADE40
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
324-351
446-473

PFIBP_ADE41
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
339-366
461-488

PFIBP_ADEB3
FIBER PROTEIN
BOVINE ADENOVIRUS TYPE 3
118-145
164-191

PFIBP_ADEM1
FIBER PROTEIN
MOUSE ADENOVIRUS TYPE 1
275-305
325-352

PFOSX_MSVFR
V-FOS/FOX TRANSFORMING
FBR MURINE OSTEOSARCOMA VIRUS
138-169

PROTEIN

PFOS_AVINK
P55-V-FOS TRANSFORMING
AVIAN RETROVIRUS NK24
116-147

PROTEIN

PFOS_MSVFB
P55-V-FOS TRANSFORMING
FBJ MURINE OSTEOSARCOMA VIRUS
162-193

PROTEIN

PGAG_AVISN
GAG POLYPROTEIN
AVIAN SPLEEN NECROSIS VIRUS
270-297

PGAG_EIAVY
GAG POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
144-171

(ISOLATE WYOMING)

PGAG_FOAMV
GAG POLYPROTEIN
HUMAN SPUMARETROVIRUS
621-648

PGAG_GALV
GAG POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
396-442
447-474

PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
91-118

(ARV2/SF2 ISOLATE)

PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
91-118

(JH3 ISOLATE)

PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
87-118

(MN ISOLATE)

PGAG_HV2BE
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
88-115

(ISOLATE BEN)

PGAG_HV2D1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
88-115

(ISOLATE D194)

PGAG_HV2NZ
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
88-115

(ISOLATE NIH-Z)

PGAG_HV2ST
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
88-115

(ISOLATE ST)

PGAG_IPHA
RETROVIRUS-RELATED GAG
HAMSTER INTRACISTERNAL A-PARTICLE
270-297

POLYPROTEI

PGAG_IPMA
RETROVIRUS-RELATED GAG
MOUSE INTRACISTERNAL A-PARTICLE
33-60
69-103
232-259

POLYPROTEI

PGAG_IPMAE
RETROVIRUS-RELATED GAG
MOUSE INTRACISTERNAL A-PARTICLE
96-130

POLYPROTEI

PGAG_MMTVB
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
84-151
156-187

PGAG_MMTVC
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
84-116

PGAG_MMTVG
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
84-151
156-187

PGAG_MPMV
GAG POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS (MPMV)
222-260

PGAG_SCVLA
MAJOR COAT PROTEIN

SACCHAROMYCES CEREVISIAE VIRUS L-A
497-531
624-651

PGAG_SIVAI
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
473-507

(ISOLATE AGM/CLONE GR1-1)

PGAG_SIVMK
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115

(K6W ISOLATE)

PGAG_SIVMS
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115

(STM ISOLATE)

PGAG_SIVS4
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115

(F236/SMH4 ISOLATE)

PGAG_SIVSP
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115

(PBJ/BC13 ISOLATE)

PGAG_SMSAV
GAG POLYPROTEIN
SIMIAN SARCOMA VIRUS
397-443

PGAG_SRV1
GAG POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
223-261

PHELI_HSVEB
PROBABLE HELICASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
184-211
321-348

PHELI_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI (STRAIN 11)
418-449

PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
490-517
701-728

PHEMA_CVBF
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN F15)
208-242

PRECURSOR

PHEMA_CVBLY
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN LY-138)
208-242

PRECURSOR

PHEMA_CVBM
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN MEBUS)
208-242

PRECURSOR

PHEMA_CVBQ
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN QUEBEC)
208-242

PRECURSOR

PHEMA_CVHOC
HEMAGGLUTININ-ESTERASE
HUMAN CORONAVIRUS (STRAIN OC43)
208-242

PRECURSOR

PHEMA_IAA1C
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/A1CH1/2/68)
387-453

PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
24-51
371-437

A/BANGKOK/1/79

PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451

A/BUDGERIGAR/HOKKAIDO/1/77)

PHEMA_IACAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
9-36

A/CAMEL/MONGOLIA/82)

PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451

A/CHICKEN/ALABAMA/1/75)

PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
31-58
382-441
494-528

A/CHICKEN/GERMANY/N/49)

PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
396-426

A/CHICKEN/PENNSYLVANIA/1/83)

PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
396-426

A/CHICKEN/PENNSYLVANIA/1370/83)

PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
119-146
384-443

A/CHICKEN/VICTORIA/1/85)

PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451

A/DUCK/ALBERTA/28/76)

PHEMA_IADA2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
423-453
499-543

A/DUCK/ALBERTA/60/76)

PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453

A/DUCK/ALBERTA/78/76)

PHEMA_IADA4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
418-478

A/DUCK/ALBERTA/35/76)

PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451

A/DUCK/CZECHOSLOVAKIA/56)

PHEMA_IADE1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-55
402-453
506-533

A/DUCK/ENGLAND/1/56)

PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437

A/DUCK/HOKKAIDO/5/77)

PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437

A/DUCK/HOKKAIDO/8/80)

PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437

A/DUCK/HOKKAIDO/33/80)

PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437

A/DUCK/HOKKAIDO/7/82)

PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437

A/DUCK/HOKKAIDO/21/82)

PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437

A/DUCK/HOKKAIDO/9/85)

PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437

A/DUCK/HOKKAIDO/10/85)

PHEMA_IADIR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
415-445

A/DUCK/IRELAND/113/83)

PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-56

A/DUCK/MEMPHIS/546/76)

PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453

A/DUCK/MEMPHIS/928/74)

PHEMA_IADMA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
31-58

A/DUCK/MANITOBA/1/53)

PHEMA_IADNY
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-55

A/DUCK/NEW YORK/12/78)

PHEMA_LDNZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451

A/DUCK/NEW ZEALAND/31/76)

PHEMA_IADU1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-55

A/DUCK/UKRAINE/1/60)

PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453

A/DUCK/UKRAINE/1/63)

PHEMA_IAEN6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
24-51

A/ENGLAND/878/69)

PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453

A/ENGLAND/321/77)

PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
177-221
384-442

A/FOWL PLAGUE VIRUS/ROSTOCK/34)

PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451

A/GREY TEAL/AUSTRALIA/2/79)

PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
505-432

A/GULL/MARYLAND/704/77)

PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
504-531

A/GULL/ASTRAKHAN/227/84)

PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/ALGIERS/72)

PHEMA_IAHAR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/HARBIN/1/88)
29-56

PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457

A/EQUINE/CAMBRIDGE/1/63)

PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457

A/EQUINE/CAMBRIDGE/1/73)

PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457

A/EQUINE/C.DETROIT/1/64)

PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457

A/EQUINE/DETROIT/1/64)

PHEMA_IAHFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/FONTAINEBLEAU/76)

PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/KENTUCKY/2/86)

PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/KENTUCKY/1/87)

PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457

A/EQUINE/LEXINGTON/1/66)

PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457

A/EQUINE/LONDON/1416/73)

PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/MIAMI/1/63)

PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/NEW MARKET/76)

PHEMA_IAHNN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457

A/EQUINE/NEW MARKET/1/77)

PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457

A/EQUINE/PRAGUE/1/56)

PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/ROMANIA/80)

PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/SANTIAGO/1/85)

PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457

A/EQUINE/SAO PAULO/1/76)

PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN)
29-56
194-221
388-457

A/EQUINE/SWITZERLAND/137/72

PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/TENNESSEE/5/86)

PHEMA_IAHTO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-455

A/EQUINE/TOKYO/71)

PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452

A/EQUINE/URUGUAY/1/63)

PHEMA_IAJAP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
196-223

A/JAPAN/305/57)

PHEMA_IAKIE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
425-478

A/KIEV/59/79)

PHEMA_IALEN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
425-478

A/LENINRAD/54/1)

PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
380-450

A/MALLARD/ASTRAKHAN/244/82)

PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
385-455

A/MALLARD/ASTRAKHAN/263/82)

PHEMA_IAMAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453

A/MALLARD/NEW YORK/6874/78)

PHEMA_IAME1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453

A/MEMPHIS/1/71)

PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453

A/MEMPHIS/102/72)

PHEMA_IAME6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
24-51
371-437

A/MEMPHIS/6/86)

PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
31-58
382-441

A/MINK/SWEDEN/84)

PHEMA_IANT6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453

A/NT/60/68)

PHEMA_IAP1L
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
505-534

A/PILOT WHALE/MAINE/328/84)

PHEMA_IAPUE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
425-478

A/PUETRO RICO/8/34)

PHEMA_IAQU7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
24-51

A/QU/7/70)

PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451

A/RUDDY TURNSTONE/NEW JERSEY/47/85)

PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451

A/SEAL/MASSACHUSETTS/133/82)

PHEMA_IASH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
28-56
160-187
506-547

A/SHEARWATER/AUSTRALIA/72)

PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
119-146
384-443

A/STARLING/VICTORIA/5156/85)

PHEMA_IATA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56

A/TAIWAN/1/86)

PHEMA_IATK1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
415-445

A/TURKEY/IRELAND/1378/83)

PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451

A/TURKEY/MINNESOTA/833/80)

PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
507-534

A/TURKEY/ONTARIO/7732/66)

PHEMA_IATKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
424-454
493-539

A/TURKEY/ONTARIO/6118/68)

PHEMA_IATKR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
32-62
194-221
381-422

A/TURKEY/OREGON/71)

PHEMA_IATKW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
419-449
500-536

A/TURKEY/WISCONSIN/1/66)

PHEMA_IATRA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-55

A/TERN/AUSTRALIA/G70C/75)

PHEMA_IAUDO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453

A/UDORN/307/72)

PHEMA_IAUSS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
29-56
425-478

PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
41-68
388-454

A/VICOTRIA/3/75)

PHEMA_IAWIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
424-477

A/WILSON-SMITH/33)

PHEMA_IAXIA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56

A/XIANFENG/3/89)

PHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453

A/SWINE/COLORADO/1/77)

PHEMA_IAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437

A/SWINE/HONG KONG/81/78)

PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437

A/SWINE/HONG KONG/126/82)

PHEMA_IAZIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
418-478
506-547

A/SWINE/INDIANA/1726/88)

PHEMA_IAZNJ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
418-478
506-547

A/SWINE/NEW JERSEY/11/76)

PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453

A/SWINE/UKKEL/1/84)

PHEMA_INBBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87)
400-431
439-483

PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAINB/BONN/43)
390-421
429-473

PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
398-429
437-481

B/ENGLAND/222/82)

PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
391-418
429-473

B/HONG KONG/8/73)

PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/LEE/40)
399-430
438-482

PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
389-420
428-472

B/MARYLAND/59)

PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
393-424
432-476

B/MEMPHIS/6/86)

PHEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
398-429
437-481

B/OREGON/5/80)

PHEMA_INBSI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
398-429
437-481

B/SINGAPORE/222/79)

PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
391-422
430-474

B/USSR/100/83)

PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
393-424
432-476

B/VICTORIA/3/85)

PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
400-431
439-483

B/VICTORIA/2/87)

PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
495-571

C/CALIFORNIA/78)

PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
483-559

C/ENGLAND/892/83)

PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
483-559

C/GREAT LAKES/1167/54)

PHEMA_INCHY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
482-558

C/HYOGO/1/83)

PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
496-572

C/JOHANNESBURG/1/66)

PHEMA_INCKY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
482-558

(STRAIN C/KYOTO/41/82)

PHEMA_INCM1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
482-558

(STRAIN C/MISSISSIPPI/80)

PHEMA_INCNA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
482-558

(STRAIN C/NARA/82)

PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559

(STRAIN C/PIG/BEIJING/10/81)

PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559

(STRAIN C/PIG/BEIJING/115/81)

PHEMA_INCP3
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559

(STRAIN C/PIG/BEIJING/439/82)

PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559

(STRAIN C/TAYLOR/1233/47)

PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559

(STRAIN C/YAMAGATA/1081)

PHEMA_NDVA
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91

NEURAMINIDASE
(STRAIN AUSTRALIA-VICTORIA/32)

PHEMA_NDVB
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91

NEURAMINIDASE
(STRAIN BEAUDETTE C/45)

PHEMA_NDVD
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91

NEURAMINIDASE
(STRAIN D26/76)

PHEMA_NDVH
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91

NEURAMINIDASE
(STRAIN B1-HITCHNER/47)

PHEMA_NDVI
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91

NEURAMINIDASE
(STRAIN ITALIEN/45)

PHEMA_NDVM
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91

NEURAMINIDASE
(STRAIN MIYADERA/51)

PHEMA_NDVQ
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91

NEURAMINIDASE
(STRAIN QUEENSLAND/66)

PHEMA_NDVTG
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91

NEURAMINIDASE
(STRAIN TEXAS G.B./48)

PHEMA_NDVU
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91

NEURAMINIDASE
(STRAIN ULSTER/67)

PHEMA_PHODV
HEMAGGLUTININ-
PHOCINE DISTEMPER VIRUS
39-66
46-73

NEURAMINIDASE

PHEMA_PI1HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 1 VIRUS
79-110
366-393

NEURAMINIDASE
(STRAIN WASHINGTON/1957)

PHEMA_PI3B
HEMAGGLUTININ-
BOVINE PARAINFLUENZA 3 VIRUS
66-93

NEURAMINIDASE

PHEMA_PI3H4
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61

NEURAMINIDASE
(STRAIN NIH 47885)

PHEMA_PI3HA
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61

NEURAMINIDASE
(STRAIN AUS/124854/74)

PHEMA_PI3HT
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-76

NEURAMINIDASE
(STRAIN TEX/545/80)

PHEMA_PI3HU
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
23-70

NEURAMINIDASE
(STRAIN TEX/9305/82)

PHEMA_PI3HV
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61

NEURAMINIDASE
(STRAIN TEX/12677/83)

PHEMA_PI3HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61

NEURAMINIDASE
(STRAIN WASH/641/79)

PHEMA_PI3HX
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61

NEURAMINIDASE
(STRAIN WASH/1511/73)

PHEMA_RACVI
HEMAGGLUTININ PRECURSOR
RACCOON POXVIRUS
166-214
256-283

PHEMA_SEND5
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
79-106

NEURAMINIDASE

PHEMA_SENDF
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN FUSHIMI)
79-106

NEURAMINIDASE

PHEMA_SENDH
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN HARRIS)
79-106

NEURAMINIDASE

PHEMA_SENDJ
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN HVJ)
79-106

NEURAMINIDASE

PHEMA_SENDZ
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN Z)
79-106

NEURAMINIDASE

PHEMA_SV41
HEMAGGLUTININ-
SIMIAN VIRUS 41
22-52
394-421

NEURAMINIDASE

PHEMA_VACCC
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
119-146
175-202
216-243

PHEMA_VACCI
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN IHD-J)
109-146
175-202
216-243

PHEMA_VACCT
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN TIAN TAN)
119-146
175-202
216-243

PHEMA_VACCV
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN WR)
109-146
175-202
215-242

PHEMA_VARV
HEMAGGLUTININ PRECURSOR
VARIOLA VIRUS
111-148
177-211
214-244

PHEX9_ADE02
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 2
100-134

PHEX9_ADE05
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 5
100-134

PHEX9_ADE07
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPES 3 and 7
97-127

PHEX9_ADE02
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 2
146-173
359-386
433-460

PHEX9_ADE05
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 5
348-375

PHEX9_ADE40
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 40
396-423

PHEX9_ADEB3
HEXON PROTEIN
BOVINE ADENOVIRUS TYPE 3
305-338

PHI38_COWPX
HEMORRHAGE-INDUCING
COWPOX VIRUS
28-55

38 KD PROTEIN

PHRG_COWPX
HOST RANGE PROTEIN
COWPOX VIRUS
462-489

PI196_ASFB7
LATE PROTEIN I196L
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
12-43

PI226_ASFB7
LATE PROTEIN I226R
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
113-147

PIBMP_CAMV4
INCLUSION BODY MATRIX
CAULIFLOWER MOSAIC VIRUS (STRAIN D4)
17-44

PROTEIN

PIBMP_CMAVD
INCLUSION BODY MATRIX
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
17-44

PROTEIN

PIBMP_CAMVP
INCLUSION BODY MATRIX
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
38-410

PROTEIN

PIBMP_CERV
INCLUSION BODY MATRIX
CARNATION ETCHED RING VIRUS
6-33

PROTEIN

PIBMP_FMVD
INCLUSION BODY MATRIX
FIGWORT MOSAIC VIRUS (STRAIN DXS)
372-407

PROTEIN

PIBMP_SOCMV
INCLUSION BODY MATRIX
SOYBEAN CHLOROTIC MOTTLE VIRUS
3-48
331-358

PROTEIN

PIC18_HCMVA
PROB PROC & TRANSPORT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
294-324

PRO UL56

PIC18_HSVSA
PROBABLE PROC & TRANSPORT
HERPESVIRUS SAIMIRI (STRAIN 11)
58-85
482-522

PRO

PIC18_MCMVS
PROB PROC & TRANSPORT
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
661-691

PRO

PIE63_HSV11
TRANSCRIPTIONAL REGULATOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
248-275

IE63

PIE68_HSV11
IMMEDIATE-EARLY PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
40-67

IE68

PIE68_HSVSA
IMMEDIATE-EARLY PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
48-78

PIR05_HCMVA
HYPOTHETICAL PROTEIN IRL5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
22-49

PIR12_HCMVA
HYPOTHETICAL PROTEIN IRL12
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-162

PIR13_HCMVA
HYPOTHETICAL PROTEIN IRL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
31-62

PKFES_FSVGA
TYROSINE KINASE TRANSF
FELINE SARCOMA VIRUS (STRAIN
106-150

PROTEIN FES
GARDNER-ARNSTEIN)

PKFGR_FSVGR
TYROSINE KINASE TRANSF
FELINE SARCOMA VIRUS (STRAIN
218-252

PROTEIN FGR
GRADNER-RASHEED)

PKFMS_FSVMD
FMS TYROSINE KINASE TRANSF
FELINE SARCOMA VIRUS (STRAIN
327-362

PROTEIN
MCDONOUGH)

PKFPS_FUJSV
TYROSINE KINASE TRANSF
FUJINAMI SARCOMA VIRUS
155-243
349-397

PROTEIN FPS

PKITH_AMEPV
THYMIDINE KINASE
AMSACTA MOOREI ENTOMOPOXVIRUS
47-84

PKITH_CAPVK
THYMIDINE KINASE
CAPRIPOXVIRUS (STRAIN KS-1)
41-68

PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
340-386

PKITH_ILTVT
THYMIDINE KINASE
INFECTIOUS LARYNGOTRACHEITIS VIRUS
334-361

(STRAIN THORNE V882)

PKR74_HSVI1
GENE 74 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
491-518

PKRB1_VACCC
30 KD PROTEIN KINASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
141-168

HOMOLOG

PKRB1_VACCV
30 KD PROTEIN KINASE
VACCINIA VIRUS (STRAIN WR)
141-168

HOMOLOG

PKRB2_VACCC
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN COPENHAGEN)
147-174

PKRB2_VACCV
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STAIN WR)
147-174

PKRF1_VARV
POSSIBLE PROTEIN KINASE F10
VARIOLA VIRUS
47-74

PNCAP_VHSVO
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71)
284-314

PKROS_AVISU
ROS TYROSINE KINASE
AVIAN SARCOMA VIRUS (STRAIN UR2)
111-138

TRANSF PROTEIN

PKRYK_AVIR3
TYROSINE KINASE TRANSF
AVIAN RETROVIRUS RPL30
22-49

PROTEIN RYK

PKYES_AVISY
TYROSINE KINASE TRANSF
AVIAN SARCOMA VIRUS (STRAIN Y73)
199-233

PROTEIN YES

PL100_ADE02
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
386-413

PL100_ADE05
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
386-413

PL100_ADE40
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 40
191-231

PL100_ADE41
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
206-233

PLMP1_EBV
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
148-175

PLMP1_EBVC
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN CAO)
148-175

PLMP1_EBVR
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN RAJI)
148-175

PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
294-321

PMCEL_SFVKA
MRNA CAPPING ENZYME,
SHOPE FIBROMA VIRUS (STRAIN KASZA)
54-156
289-316
497-524
622-656

LARGE SUBUNI

PMCEL_VACCC
MRNA CAPPING ENZYME,
VACCINIA VIRUS (STRAIN COPENHAGEN)
85-112
291-318
630-657

LARGE SUBUNI

PMCEL_VACCV
MRNA CAPPING ENZYME,
VACCINIA VIRUS (STRAIN WR)
85-112
291-318
630-657

LARGE SUBUNI

PMCEL_VARV
MRNA CAPPING ENZYME,
VARIOLA VIRUS
85-112
291-318
630-657

LARGE SUBUNI

PMCE_ASFB7
MRNA CAPPING ENZYME
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
279-313

PMOVP_CGMVS
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
170-197

(WATERMELON STRAIN W)

PMOVP_CGMVW
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
170-197

(WATERMELON STRAIN SH)

PMOVP_ORSV
MOVEMENT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
53-90

PMOVP_TOMVA
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LIIA)
46-80

PMOVP_TOMVL
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LII)
46-80

PMTC1_CHVN1
MODIFICATION METHYLASE
CHLORELLA VIRUS NC-1A
143-170
229-256

CVIBI

PMTC2_CHVP1
MODIFICATION METHYLASE

PARAMECIUM BURSARIA CHLORELLA VIRUS 1
4-31
130-172

CVIAII

PMYC_AVIM2
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS CMII
232-266
375-402

PMYC_AVIMC
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
232-267
376-403

PMYC_AVIMD
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HBI
232-267
376-403

PMYC_AVIME
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS MH2E21
239-268
377-404

PMYC_AVIOK
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS OK10
227-261
370-397

PMYC_FLV
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA VIRUS
393-420

PMYC_FLVTT
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA PROVIRUS FTT
393-420

PNCAP_BEV
NUCLEOCAPSID PROTEIN
BERNE VIRUS
49-76
129-156

PNCAP_BUNLC
NUCLEOCAPSID PROTEIN
BUNYAVIRUS LA CROSSE
85-112

PNCAP_BUNSH
NUCLEOCAPSID PROTEIN
BUNYAVIRUS SNOWSHOE HARE
96-123

PNCAP_BUNYW
NUCLEOCAPSID PROTEIN
BUNYAMWERA VIRUS
48-75
189-220

PNCAP_CCHFV
NUCLEOCAPSID PROTEIN
CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS
223-271

(ISOLATE C68031)

PNCAP_CDVO
NUCLEOCAPSID PROTEIN
CANINE DISTEMPER VIRUS (STRAIN
140-174

ONDERSTEPOORT)

PNCAP_CHAV
NUCLEOCAPSID PROTEIN
CHANDIPURA VIRUS (STRAIN 1653514)
40-74

PNCAP_CVCAE
NUCLEOCAPSID PROTEIN
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
191-227

PNCAP_CVPPU
NUCLEOCAPSID PROTEIN
PORCINE TRANSMISSIBLE GASTROENTERITIS
191-227

CORONAVIRUS (STRAIN PURD

PNCAP_CVPR8
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS
191-227

(STRAIN 86/137004/BRITISH ISOLAT

PNCAP_CVPRM
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS
191-227

(STRAIN RM4)

PNCAP_DUGBV
NUCLEOCAPSID PROTEIN
DUGBE VIRUS
238-265

PNCAP_FIPV
NUCLEOCAPSID PROTEIN
FELINE INFECTIOUS PERITONITIS VIRUS
182-209

(STRAIN 79-1146)

PNCAP_HAZVJ
NUCLEOCAPSID PROTEIN
HAZARA VIRUS (ISOLATE JC280)
6-33
256-283

PNCAP_HRSV1
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
4-31
74-108
112-141

(SUBGROUP B/STRAIN 18537)

PNCAP_HRSVA
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
4-31

(STRAIN A2)

PNCAP_LASSG
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN GA391)
64-99
147-174

PNCAP_LASSJ
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN JOSIAH)
64-99
467-504

PNCAP_LYCVA
NUCLEOCAPSID PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
64-97

(STRAIN ARMSTRONG)

PNCAP_MAGV
NUCLEOCAPSID PROTEIN
MAGUARI VIRUS
41-68
192-219

PNCAP_MOPEI
NUCLEOCAPSID PROTEIN
MOPEIA VIRUS
64-99

PNCAP_PI1HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
377-404
455-482

PNCAP_PI1HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
377-404
444-488

(STRAIN WASHINGTON/1957)

PNCAP_PI3H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
376-403

(STRAIN N1H) 47885

PNCAP_PTPV
NUCLEOCAPSID PROTEIN
PUNTA TORO PHLEBOVIRUS
3-30

PNCAP_PUUMH
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN HALLNAS B1)
2-29

PNCAP_PUUMS
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN SOTKAMO)
2-29

PNCAP_PVM
NUCLEOCAPSID PROTEIN
PNEUMONIA VIRUS OF MICE
93-120

PNCAP_RABVA
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN AVO1)
133-167

PNCAP_RABVP
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN PV)
133-167

PNCAP_RABVS
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN SAD B19)
133-167

PNCAP_SEND5
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
363-404

PNCAP_SENDE
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN ENDERS)
363-404

PNCAP_SENDZ
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z)
363-404

PNCAP_SFSV
NUCLEOCAPSID PROTEIN
SANDFLY FEVER SICILIAN VIRUS
4-31

PNCAP_SV41
NUCLEOCAPSID PROTEIN
SIMIAN VIRUS 41
507-534

PNCAP_TACV
NUCLEOCAPSID PROTEIN
TACARIBE VIRUS
50-77

PNCAP_TOSV
NUCLEOCAPSID PROTEIN
TOSCANA VIRUS
6-33

PNCAP_UUK
NUCLEOCAPSID PROTEIN
UUKUNIEMI VIRUS
68-102

PNCAP_VHSV0
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
284-314

(STRAIN 07-71)

PNCAP_VHSVM
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
149-176
284-314

(STRAIN MAKAH)

PNCAP_VSVIG
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE)
56-83

INDIANA/STRAIN GLASGOW

PNCAP_VSVJO
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE
67-94
338-365

NEW) JERSEY/STRAIN OGDEN

PNCAP_VSVSJ
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
56-83

(STRAIN SAN JUAN)

PNEF_HV1EL
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
81-119

(ELI ISOLATE)

PNEF_HV1ND
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
81-119

(NDK ISOLATE)

PNEF_HV1Z6
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
82-124

(ZAIRE 6 ISOLATE)

PNEF_SIVAI
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
96-137

(ISOLATE AGM/CLONE GRI-1)

PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
47-81

A/BLACK DUCK/AUSTRALIA/702/78)

PNRAM_IACAO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
33-64

A/CAMEL/MONGOLIA/82

PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
16-43
50-91

PNRAM_IADA1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
51-81

A/DUCK/ALBERTA/28/76)

PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
21-48

A/DUCK/GERMANY/49)

PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
10-48
52-80
197-224

A/FOWL PLAGUE VIRUS/WEYBRIDGE)

PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
197-224
386-413

A/EQUINE/COR/16/74)

PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
5-44
46-76
364-400

A/EQUINE/KENTUCKY/1/81)

PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
50-81

PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
50-81

A/LENINGRAD/54/1)

PNRAM_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
16-43
50-81

A/MEMPHIS/1/71H-A/BELLAMY/42N)

PNRAM_IAPAR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
15-43
50-81

A/PARROT/ULSTER/73)

PNRAM_IAPUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
16-43

A/PUERTO RICO/8/34)

PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
49-88

A/RUDDY TURNSTONE/NEW JERSEY/60/85)

PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
49-82

A/TERN/AUSTRALIA/G70C/75)

PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
50-81

PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
49-88

A/WHALE/MAINE/1/84)

PNRAM_IAWIL
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
16-43

A/WILSON-SMITH/33)

PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/LEE/40)
4-35

PNS1_SIDEV
PROB NONSTRUC PRO
BOMBYX DENSONUCLEOSIS VIRUS
283-310

PRECURSOR

PNS2_SIDEV
PROB NONSTRUC PRO
BOMBYX DENSONUCLEOSIS VIRUS
42-69

PRECURSOR

PNSS_INSVN
NON-STRUCTURAL PROTEIN
IMPATIENS NECROTIC SPOT VIRUS
95-122

(STRAIN NL-07)

PNSS_TSWVB
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
5-32
432-462

(BRAZILIAN ISOLATE CPNH1/BR-01)

PNSS_TSWVL
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS (STRAIN L3)
5-32

PNTP1_AMEPV
NUCLEOSIDE TRIPHOS-
AMSACTA MOOREI ENTOMOPOXVIRUS
28-69

PHATASE I

PNTP1_CBEPV
NUCLEOSIDE TRIPHOS-
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
122-166
347-374
524-551

PHATASE I

PNTP1_VACCC
NUCLEOSIDE TRIPHOS-
VACCINIA VIRUS (STRAIN COPENHAGEN)
65-92
394-421
514-587

PHATASE I

PNTP1_VACCV
NUCLEOSIDE TRIPHOS-
VACCINIA VIRUS (STRAIN WR)
65-92
394-421
514-587

PHATASE I

PNTP1_VARV
NUCLEOSIDE TRIPHOS-
VARIOLA VIRUS
300-327
420-447
455-493

PHATASE I

PP100_HSV6U
MAJOR ANTIGENIC STRUCTL
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
81-108
189-216
688-715
785-812

PROTEIN
UGANDA-1102)

PPAP1_VACCC
POLY(A) POL CATALYTIC
VACCINIA VIRUS (STRAIN COPENHAGEN)
88-115

SUBUNIT

PPAP1_VACCV
POLY(A) POL CATALYTIC
VACCINIA VIRUS (STRAIN WR)
88-115

SUBUNIT

PPAP1_VARV
POLY(A) POL CATALYTIC
VARIOLA VIRUS
88-115

SUBUNIT

PPAP2_CAPVK
POLY(A) POL REG SUBUNIT
CARPRIPOXVIRUS (STAIN KS-1)
118-145

PPAP2_FOWPV
POLY(A) POL REG SUBUNIT
FOWLPOX VIRUS
27-54

PPE12_NPVAC
12.1 KD PROTEIN IN PE

AUTOGRAPHA CALIFORNICA NUCLEAR
61-105

5′REGION
POLYHEDROSIS VIRUS

PPE12_NPVOP
11.5 KD PROTEIN IN P26

ORGYIA PSEUDOTSUGATA MULTICAPSID
61-95

5′REGION
POLYHEDROSIS VIRUS

PPE38_NPVAC
MAJOR IMMEDIATE EARLY

AUTOGRAPHA CALIFORNICA NUCLEAR
204-248

PROTEIN
POLYHEDROSIS VIRUS

PPE48_NPVAC
48.3 KD IN PE-P26

AUTOGRAPHA CALIFORNICA NUCLEAR
4-38
51-78

INTERGENIC REGION
POLYHEDROSIS VIRUS

PPEN3_ADEGX
PENTON PROTEIN
AVIAN ADENOVIRUS GAL10 (STRAIN SA2)
96-123

PPOL1_BAYMG
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
1272-
1775-
2236-

(GERMAN ISOLATE)
1299
1802
2263

PPOL1_BAYMJ
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
1774-
2234-

(JAPANESE STRAIN II-1)
1801
2261

PPOL1_GCMV
RNA1 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME
481-508
1909-

MOSAIC VIRUS

1941

PPOL1_GFLV
RNA1 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
170-197
636-677
958-985
1161-

1195

PPOL1_TBRVS
RNA1 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
1096-

1123

PPOL2_BAYMG
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
240-281
801-828

(GERMAN ISOLATE)

PPOL2_BAYMJ
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
240-267
801-828

(JAPANESE STRAIN II-1)

PPOL2_GCMV
RNA2 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS
11-38

PPOL2_GFLV
RNA2 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
549-576

PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS
982-

(ISOLATE RASPBERRY)
1009

PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27)
17-44
1030-
1145-

1057
1172

PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL)
629-660
1082-
1303-
2233-
2476-
2609-
3613-

1112
1330
2261
2503
2636
3642

PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1)
1303-
2143-
2519-
2802-
3523-

1333
2171
2546
2829
3550

PPOLG_BYMV
GENOME POLYPROTEIN
BEAN YELLOW MOSAIC VIRUS
96-123

PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIE VIRUS A21 (STRAIN COE)
7-43
664-694
1062-
1900-

1099
1930

PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIE VIRUS A9 (STRAIN GRIGGS)
1040-

1076

PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIE VIRUS B1
645-672
841-868
1021-

1057

PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIE VIRUS B3
1024-
1881-

1060
1908

PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIE VIRUS B4
644-673
1022-

1058

PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIE VIRUS B5
1024-

1060

PPOLG_CYVV
GENOME POLYPROTEIN
CLOVER YELLOW VEIN VIRUS
120-154

PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE
1858-
2890-
2989-

S275/90)
1885
2935
3016

PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
1544-
1858-
2908-
2982-
3117-

1571
1885
2935
3016
3147

PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53)
1544-
1858-
2485-
2908-
2982-
3117-

1571
1885
2519
2935
3016
3147

PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMAICA)
1544-
1858-
2908-
3117-
3346-

1571
1885
2935
3147
3373

PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR159/S1)
1544-
1858-
2905-
2979-
3114-
3343-

1571
1885
2932
3013
3144
3370

PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974)
1134-
1448-

1161
1475

PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
837-864
1542-
1857-
2494-
2980-
3345-

1569
1884
2521
3014
3372

PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
2885-
2977-
3342-

2930
3011
3369

PPOLG_EC11G
GENOME POLYPROTEIN
ECHOVIRUS 11 (STRAIN GREGORY)
213-249

PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
70-018
1484-
1522-

1518
1563

PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
70-97
1486-
1524-

(STRAIN EMC-B NONDIABETOGENIC)

1520
1565

PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
70-97
1486-
1524-

(STRAIN EMC-D DIABETOGENIC)

1520
1565

PPOLG_ENMG3
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
70-108

(STRAIN 37A)

PPOLG_ENMGO
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
3-41

PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
302-329
1119-

(STRAIN A10-61)

1146

PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
301-328
1119-

(STRAIN A12)

1146

PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
1119-

(STRAINS O1K AND O1BFS)
1146

PPOLG_FMDVS
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
101-128

(STRAIN C1-SANTA PAU [C-58])

PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
702-729

PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT)
699-726
1195-
1303-
1434-
3068-
3406-

1232
1333
1461
3095
3440

PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN BRESCIA)
699-726
1195-
3068-
3406-
3532-

1232
3095
3440
3559

PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK)
702-729
1045-

1072

PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H)
702-729
1045-

1072

PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6)
374-401
2089-

2116

PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8)
1049-
2089-

1076
2116

PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
378-405
702-729
1045-

1072

PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-JT)
702-729
1045-

1072

PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE TAIWAN)
702-729
1045-

1072

PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
203-237
1021-
1117-
1454-

1048
1149
1481

PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
203-237
1021-
1117-
1454-

1048
1149
1481

PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
203-237
1021-
1117-
1454-

1048
1149
1481

PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN CR326)
203-237

PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN GA76)
182-216

PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
203-237
1021-
1103-

1048
1149

PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
203-237
1021-
1103-

1048
1149

PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
203-237
1021-
1103-

1048
1149

PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27)
207-241
1025-
1115-

1052
1192

PPOLG_HPAVT
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN CY-145)
203-237

PPOLG_HRV14
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14
17-44
559-586
652-679
1877-

1904

PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B
1132-
1855-

1159
1882

PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2
1125-
1552-

1152
1593

PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89
883-910
1141-
1566-
1862-

1168
1607
1889

PPOLG_HUEV7
GENOME POLYPROTEIN
HUMAN ENTEROVIRUS 70 (STRAIN J670/71)
876-910

PPOLG_IBDVO
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-277

(STRAIN OH)

PPOLG_JAEV1
GENOME PPOLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14)
214-248
983-
2796-

1010
2823

PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V)
214-248
983-
2796-

1010
2823

PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN
214-248
983-
2796-

JAOARS982)

1010
2823

PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALAITS VIRUS (STRAIN
141-175
911-938

NAKAYAMA)

PPOLG_KUNJM
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
980-1007

PPOLG_LANVT
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
431-465
1634-

1661

PPOLG_LANVY
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN YELANTSEV)
431-465

PPOLG_LIV
GENOME POLYPROTEIN
LOUPING ILL VIRUS
431-465

PPOLG_LIVSB
GENOME POLYPROTEIN
LOUPING ILL VIRUS (STRAIN SB 526)
151-185

PPOLG_MCFA
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT
671-698
3056-
3303-

3083
3330

PPOLG_MDMV
GENOME POLYPROTEIN
MAIZE DWARF MOSAIC VIRUS
10-37

PPOLG_MVEV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
212-256

PPOLG_OMV
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
24-51
946-973

PPOLG_PEMVC
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE)
377-404
704-738
831-858
900-927
1167-
1485-
1787-
2433-

1201
1512
1814
2464

PPOLG_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1060-
1901-

1100
1931

PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
670-697
1063-
1903-

1101
1933

PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
1061-
1901-

1099
1931

PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
1061-
1901-

1099
1931

PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAIN 23127)
1060-
1900-

1098
1930

PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAINS P3/LEON/37
1060-
1900-

AND P3/LEON N12A[1]B)
1098
1930

PPOLG_PPVD
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D)
921-948
1498-
2771-

948
1525
2798

PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN EL AMAR)
1146-

1187

PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT)
920-947
1497-
2770-

1524
2800

PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC)
920-947
1497-
2770-

1524
2797

PPOLG_PRSVH
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA)
500-527

PPOLG_PRSVP
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA 5-1)
391-418

PPOLG_PRSVW
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN W)
489-516

PPOLG_PSBMV
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPD1)
271-315
1132-
1510-

1177
1537

PPOLG_PVYC
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN C) (PVY)
433-460
701-735

PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN)
218-245
433-460
701-735
1486-
1777-

1513
1811

PPOLG_PVYN
GENOME POLYPROTEIN
POTATA VIRUS Y (STRAIN N)
433-460
701-735
1486-
1777-

1513
1811

PPOLG_PVYO
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN O)
433-460
701-735

PPOLG_PYFV1
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121)
1124-
2707-

1151
2734

PPOLG_SUMVS
GENOME POLYPROTEIN
SUGARCANE MOSAIC VIRUS (STRAIN SC)
10-37

PPOLG_SVDVH
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
1024-

(STRAIN H/3 ′76)
1060

PPOLG_SVDVU
GENOME POLYPROTEIN
1024-1060

PPOLG_TBEVS
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
87-121
234-272
1632-
2265-
2909-

(STRAIN SOFJIN)

1661
2292
2936

PPOLG_TBEVW
GENOME POLYPROTEIN
BORNE ENCEPHALATIS VIRUS
1632-

(WESTERN SUBTYPE)
1659

PPOLG_TEV
GENOME POLYPROTEIN
TOBACCO ETCH VIRUS
845-872
1148-
1416-
1773-

1175
1443
1800

PPOLG_TMEVB
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS
79-117
200-227

(STRAIN BEAN 8386)

PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS
90-117
200-227

(STRAIN DA)

PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS
90-117
200-227

(STRAIN GDVII)

PPOLG_TUMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS
232-262
773-800

PPOLG_TVMV
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS
406-433
670-704
2708-

2742

PPOLG_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
202-229

PPOLG_WNV
GENOME POLYPROTEIN
WEST NILE VIRUS
210-254
3385-

3412

PPOLG_YEFV1
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
436-463

PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204)
436-463

PPOLG_ZYMV
GENOME POLYPROTEIN
ZUCCHINI YELLOW MOSAIC VIRUS
69-96

PPOLH_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1063-
1903-

1101
1933

PPOLN_EEVT
NON-STRUCTURAL
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1402-
1894-

POLYPROTEIN
(STRAIN TRINIDAD DONKEY)
1467
1921

PPOLN_FCVC6
NON-STRUCTURAL
FELINE CALICIVRUS (STRAIN CFI/68 FIV)
445-472

POLYPROTEIN

PPOLN_FCVF9
NON-STRUCTURAL
FELINE CALICIVIRUS (STRAIN F9)
1034-

POLYPROTEIN

1061

PPOLN_HEVBU
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN BURMA)
219-246
349-376

POLYPROTEIN

PPOLN_HEVME
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN MEXICO)
219-246
349-376

POLYPROTEIN

PPOLN_HEVMY
N-STRUCTURAL
HEPATITIS E VIRUS (STRAIN MYANMAR)
219-246
349-376

POLYPROTEIN

PPOLN_HEVPA
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN PAKISTAN)
218-245
348-375

POLYPROTEIN

PPOLN_MIDDV
NON-STRUCTURAL
MIDDELBURG VIRUS
955-982

POLYPROTEIN

PPOLN_ONNVG
NON-STRUCTURAL
O′NYONG-NYONG VIRUS (STRAIN GULU)
2453-

POLYPROTEIN

2480

PPOLN_RHDV
NON-STRUCTURAL
RABBIT HEMORRHAGIC DISEASE VIRUS
313-347
1657-

POLYPROTEIN

1684

PPOLN_RRVN
NON-STRUCTURAL
ROSS RIVER VIRUS (STRAIN NB5092)
1057-
1477-
2418-

POLYPROTEIN

1084
1504
2445

PPOLN_RRVT
NON-STRUCTURAL
ROSS RIVER VIRUS (STRAIN T48)
146-173
1087-

POLYPROTEIN

1114

PPOLN_RUBVT
NON-STRUCTURAL
RUBELLA VIRUS (STRAIN THERIEN)
2060-

POLYPROTEIN

2087

PPOLN_SFV
NON-STRUCTURAL
SEMLIKI FOREST VIRUS
1154-

POLYPROTEIN

1181

PPOLN_SINDO
NON-STRUCTURAL
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN
936-970

POLYPROTEIN
EDSBYN 82-5)

PPOLN_WEEV
NON-STRUCTURAL
WESTERN EQUINE ENCEPHALITIS VIRUS
4-31

POLYPROTEIN

PPOLS_IBDV5
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258

(STRAIN 52/70)

PPOLS_IBDVA
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258

(STRAIN AUSTRALIAN 002-73)

PPOLS_IBDVC
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258

(STRAIN CU-1)

PPOLS_IBDVE
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258

(STRAIN E)

PPOLS_IBDVP
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
212-239

(STRAIN PBG-98)

PPOLS_IBDVS
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258

(STRAIN STC)

PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
O′NYONG-NYONG VIRUS (STRAIN GULU)
356-383

PPOLS_RRVN
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092)
939-973

PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
939-973

PPOLS_SINDO
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN
1138-

EDSBYN 82-5)
1165

PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
1138-

1165

PPOLS_WEEV
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
920-947

PPOL_BAEVM
POL POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
675-706
715-742

PPOL_CAEVC
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
886-924

(STRAIN CORK)

PPOL_COYMV
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS
333-360
838-865
1075-
1178-
1313-

1102
1205
1347

PPOL_EIAV9
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369)
472-505
826-853

PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22)
472-505
826-853

PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
471-504
825-852

(ISOLATE WYOMING)

PPOL_FENV1
POL POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECE1
532-599
627-654

PPOL_FIVPE
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
442-473

(ISOLATE PETALUMA)

PPOL_FMVD
ENZYMATIC POLYPROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
403-430

PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
535-562
676-703

PPOL_HTL1A
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK)
674-712

PPOL_HTL1C
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBBEAN ISOLATE)
674-712

PPOL_HV1A2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
218-245
620-661

(ARV2/SF2 ISOLATE)

PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
230-257
637-673

(BH10 ISOLATE)

PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
230-257
632-673

(BH5 ISOLATE)

PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
230-257
632-673

(BRU ISOLATE)

PPOL_HV1EL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
624-660

(ELI ISOLATE)

PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
218-245
620-661
921-951

(HXB2 ISOLATE)

PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
222-249
624-665

(JRCSF ISOLATE)

PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
476-510
619-660

(MAL ISOLATE)

PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
221-248
623-664

(MN ISOLATE)

PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
218-245
625-661

(NEW YORK-5 ISOLATE)

PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
624-660

(NDK ISOLATE)

PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
218-245
620-661

(OYI ISOLATE)

PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
230-257
637-673

(PV22 ISOLATE)

PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
619-660

(RF/HAT ISOLATE)

PPOL_HV1U4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
513-540
619-660

(STRAIN UGANDAN/IOSLATE U

PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
619-660

(Z2/CDC-Z34 ISOLATE)

PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
491-582

(ISOLATE BEN)

PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
471-562

(ISOLATE CAM2)

PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
509-600

(ISOLATE D194)

PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
491-568

(ISOLATE D205,7)

PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
471-562

(ISOLATE GHANA-1)

PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
471-529

(ISOLATE NIH-Z)

PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
472-563

(ISOLATE ROD)

PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
473-562

(ISOLATE SBLISY)

PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
491-582

(ISOLATE ST)

PPOL_IPHA
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
200-227
354-381
461-499

PPOL_IPMA
PUTATIVE POL POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
211-238
302-329
400-427

PPOL_IPMAI
PROBABLE POL POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
130-157
221-248

PPOL_JSRV
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
204-231

PPOL_MLVAK
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
453-480

PPOL_MLVAV
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
805-832

PPOL_MLVRD
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
716-743
805-832

PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
101-128
190-217

(STRAIN KAPLAN)

PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
574-612
670-697

PPOL_OMVVS
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
67-94
471-505
873-900

PPOL_RSVP
POL POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
797-824

PPOL_RTBV
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
7-44
59-93
176-203
202-229
410-437
447-476
1022-

1049

PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
7-44
59-93
176-203
202-229
410-437
447-476
1022-

(ISOLATE PHILIPPINES)

1049

PPOL_SFV1
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
427-454

PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
431-458
547-574
637-671

(AGM155 ISOLATE)

PPOL_SIVA2
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
45-72

(AGM266 ISOLATE)

PPOL_SIVA3
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
71-98

(AGM385 ISOLATE)

PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
436-463
482-516
642-669

(AGM3 ISOLATE)

PPOL_SIVAI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
478-515

(ISOLATE AGM/CLONE GR1-1)

PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
657-691

(TYO-1 ISOLATE)

PPOL_SIVCZ
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
242-269
626-685

(SIV(CPZ))

PPOL_SIVGB
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
227-254
636-670

(ISOLATE GB1)

PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
533-560

(MM142-83 ISOLATE)

PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
533-560

(K6W ISOLATE)

PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
496-523

(F236/SMH4 ISOLATE)

PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
499-526

(PBJ/BC13 ISOLATE)

PPOL_SMRVH
POL POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
601-628

PPOL_SOCMV
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
268-295
348-419

PPOL_SRV1
POL POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
578-612
670-697

PPOL_VILV
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
490-524
881-919

PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS1)
89-116
490-524
881-919

PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2)
490-524
881-919

PPR73_MMTVB
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
288-315

PPR73_MMTVC
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
45-79

PPR73_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
167-201

PPYHD_CPVBM
POLYHEDRIN PRECURSOR
BOMBYX MORI CYTOPLASMIC POLYHEDROSIS
37-71

VIRUS

PPYHD_NPVAC
POLYHEDRIN

AUTOGRAPHA CALIFORNICA NUCLEAR
13-47

POLYHEDROSIS VIRUS

PPYHD_NPVAS
POLYHEDRIN
AGROTIS SEGETUM NUCLEAR POLYHEDROSIS
14-48
201-228

VIRUS

PPYHD_NPVBM
POLYHEDRIN
BOMBYX MORI NUCLEAR POLYDEDROSIS VIRUS
12-46

PPYHD_NPVBS
POLYHEDRIN

BUZURA SUPPRESSARIA NUCLEAR POLYHEDROSIS
14-48

VIRUS

PPYHD_NPVHC
POLYHEDRIN

HYPHANTRIA CUNEA
NUCLEAR POLYHEDROSIS

13-40

VIRUS

PPYHD_NPVLD
POLYHEDRIN
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
14-48

POLYHEDROSIS VIRUS

PPYHD_NPVMB
POLYHEDRIN

MAMESTRA BRASSICAE NUCLEAR POLYHEDROSIS
14-48

VIRUS

PPYHD_NPVOP
POLYHEDRIN

ORGYIA PSEUDOTSUGATA
MULTICAPSID

13-47

POLYHEDROSIS VIRUS

PPYHD_NPVOS
POLYHEDRIN

ORGYIA PSEUDOTSUGATA SINGLE CAPSID
14-48

NUCLEAR POLYHEDROSIS VIRUS

PPYHD_NPVPF
POLYHEDRIN

PANOLIS FLAMMEA MULTIPLE NUCLEOCAPSID
14-48

POLYHEDROSIS VIRUS

PPYHD_NPVSE
POLYHEDRIN

SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS
14-48

VIRUS (STRAIN US)

PPYHD_NPVSF
POLYHEDRIN

SPODOPTERA FRUGIPERDA NUCLEAR
14-48

POLYHEDROSIS VIRUS

PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
41-68

(TYO-1 ISOLATE)

PREV_VILV
REV PROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
22-62

PRIR1_ASFM2
RIBONUC-DIPHOSPH REDUCT
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI
7-41
88-119
363-390

LARGE CHA
LH 20/1)

PRIR1_HCMVA
RIBONUC-DIPHOSPH REDUCT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
622-649

LARGE CHA

PRIR1_HSVEB
RIBONUC-DIPHOSPH REDUCT
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
75-102

LARGE CHA

PRIR1_HSVSA
RIBONUC-DIPHOSPH REDUCT
HERPESVIRUS SAIMIRI (STRAIN 11)
324-351

LARGE CHA

PRIR1_VACCC
RIBONUC-DIPHOSPH REDUCT
VACCINIA VIRUS (STRAIN COPENHAGEN)
367-401

LARGE CHA

PRIR1_VACCV
RIBONUC-DIPHOSPH REDUCT
VACCINIA VIRUS (STRAIN WR)
367-401

LARGE CHA

PRIR1_VARV
RIBONUC-DIPHOSPH REDUCT
VARIOLA VIRUS
367-401

LARGE CHA

PRIR1_VZVD
RIBONUC-DIPHOSPH REDUCT
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
119-146

LARGE CHA

PRIR1_HSVB3
RIBONUC-DIPHOSPH REDUCT
BOVINE HERPESVIRUS TYPE 1 (STRAIN 34)
90-117

SMALL CHA

PRP94_VACCV
RNA-POL-ASSOC TRANS SPEC
VACCINIA VIRUS (STRAIN WR)
41-68
513-540

FACTOR

PRP94_VARV
RNA-POL-ASSOC TRANS SPEC
VARIOLA VIRUS
41-75
77-104
513-540

FACTOR

PRPO1_VACCC
DNA-DIRECTED RNA POL
VACCINIA VIRUS (STRAIN COPENHAGEN)
237-264
587-616
810-837
961-992

147 KD

PRPO1_VACCV
DNA-DIRECTED RNA POL
VACCINIA VIRUS (STRAIN WR)
237-264
587-616
810-837
961-992
1011-

147 KD

1038

PRPO1_VARV
DNA-DIRECTED RNA POL
VARIOLA VIRUS
237-264
587-616
810-837
961-992

147 KD

PRPO2_CAPVK
DNA-DIRECTED RNA POL
CAPRIPOXVIRUS (STRAIN KS-1)
19-65
114-155

132 KD

PRPO2_COWPX
DNA-DIRECTED RNA POL
COWPOX VIRUS
211-241
481-509

132 KD

PRPO2_VACCV
DNA-DIRECTED RNA POL
VACCINIA VIRUS (STRAIN WR)
211-241
481-509

132 KD

PRPO2_VARV
DNA-DIRECTED RNA POL
VARIOLA VIRUS
211-241
481-509

132 KD

PRPO4_CAPVK
DNA-DIRECTED RNA POL 35 KD
CAPRIPOXVIRUS (STRAIN KS-1)
36-63

PRPO7_VACCV
DNA-DIRECTED RNA POL 19 KD
VACCINIA VIRUS (STRAIN WR)
8-35
43-70

PRPO7_VARV
DNA-DIRECTED RNA POL 19 KD
VARIOLA VIRUS
43-70

PRPOA_LELV
RNA-DIRECTED RNA
LELYSTAD VIRUS
1533-

POLYMERASE

1560

PRPOL_EAV
RNA-DIRECTED RNA
EQUINE ARTERITIS VIRUS
888-915
1639-

POLYMERASE

1673

PRRP1_IAKOR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/KOREA/426/68)
575-602

POL SUB P1

PRRP2_IAANN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
119-146

POL SUB P2

PRRP2_IADH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
119-146

POL SUB P2
A/DUCK/HOKKAIDO/8/80)

PRRP2_IAFPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/FOWL
119-146

POL SUB P2
PLAGUE VIRUS/ROSTOCK/34)

PRRP2_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
119-146

POL SUB P2
A/GULL/MARYLAND/704/77)

PRRP2_IAHLO
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/EQUINE/LONDON/1416/73)

PRRP2_IAHTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/EQUINE/TENNESSEE/5/86)

PRRP2_IAKOR
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/KOREA/426/68)

PRRP2_IALE1
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/LENINGRAD/134/57)

PRRP2_IALE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/LENINGRAD/134/17/57)

PRRP2_IAMAN
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/MALLARD/NEW YORK/6750/78)

PRRP2_IANT6
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/NT/60/68)

PRRP2_IAP10
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/PINTAIL/ALBERTA/119/79)

PRRP2_IAPUE
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/PUERTO RICO/8/34)

PRRP2_IARUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/RUDDY TURNSTONE/NEW JERSEY/47/85)

PRRP2_IASIN
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/SINGAPORE/1/57)

PRRP2_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/TURKEY/MINNESOTA/833/80)

PRRP2_IAVI7
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146
327-354

POL SUB P2
(STRAIN A/VICTORIA/3/75)

PRRP2_IAWIL
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/WILSON-SMITH/33)

PRRP2_IAZH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/SWINE/HONG KONG/81/78)

PRRP2_IAZH3
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/SWINE/HONG KONG/126/82)

PRRP2_IAZI1
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/SWINE/IOWA/15/30)

PRRP2_IAZTF
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146

POL SUB P2
(STRAIN A/SWINE/TENNESSEE/26/77)

PRRP2_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS
157-194

POL SUB P2
(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTED])

PRRP2_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS
164-194

POL SUB P2
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE)

PRRP2_INBS1
RNA-DIRECTED RNA
INFLUENZA B VIRUS
157-194

POL SUB P2
(STRAIN B/SINGAPORE/222/79)

PRRP3_IABUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS
537-567

POL SUB P3
(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)

PRRP3_IACH1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83
331-358

POL SUB P3

PRRP3_IAHPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS
331-361
480-507

POL SUB P3
(STRAIN A/EQUINE/PRAGUE/1/56)

PRRP3_IAZTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS
487-514

POL SUB P3
(STRAIN A/SWINE/TENNESSEE/24/77)

PRRP3_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS
2-33
472-509

POL SUB P3
(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTED])

PRRP3_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS
2-33
472-509

POL SUB P3
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE)

PRRP3_INCBE
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85)
509-536

POL SUB P3

PRRP3_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN C/JJ/50)
509-536

POL SUB P3

PRRP3_THOGV
RNA-DIRECTED RNA
THOGOTO VIRUS
149-176
358-385

POL SUB P3

PRRPA_CVH22
RNA-DIRECTED RNA
HUMAN CORONA VIRUS (STRAIN 229E)
516-543
724-751
1971-
3781-

POLYMERASE

2008
3811

PRRPA_CVMJH
RNA-DIRECTED RNA
MURINE CORONAVIRUS MHV (STRAIN JHM)
624-651
4326-

POLYMERASE

4353

PRRPB_BEV
RNA-DIRECTED RNA
BERNE VIRUS
27-54
557-584
943-984

POLYMERASE

PRRPB_CVMA5
RNA-DIRECTED RNA
MURINE CORONAVIRUS MHV (STRAIN A59)
885-915
1129-

POLYMERASE

1170

PRRPB_CVMJH
RNA-DIRECTED RNA
MURINE CORONAVIRUS MHV (STRAIN JHM)
885-915
1129-

POLYMERASE

1170

PRRPB_CVPFS
RNA-DIRECTED RNA
PORCINE TRANSMISSIBLE GASTROENTERITIS
20-47
353-380
385-412

POLYMERASE
CORONAVIRUS (STRAIN FS722

PRRPB_IBVB
RNA-DIRECTED RNA
AVIAN INFECTIOUS BRONCHITIS VIRUS
1510-
2296-
2547-

POLYMERASE
(STRAIN BEAUDETTE)
1547
2331
2574

PRRPB_IBVK
RNA-DIRECTED RNA
AVIAN INFECTIOUS BRONCHITIS VIRUS
165-200
416-443

POLYMERASE
(STRAIN KB8523)

PRRPL_BTV10
RNA-DIRECTED RNA
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
1032-

POLYMERASE

1059

PRRPL_BUNYW
RNA POLYMERASE
BUNYAMWERA VIRUS
80-114
317-350
1802-
1892-

1861
1919

PRRPL_CDVO
RNA POLYMERASE BETA
CANINE DISTEMPER VIRUS (STRAIN
24-51

SUBUNIT
ONDERSTEPOORT)

PRRPL_HANTV
RNA POLYMERASE
HANTANN VIRUS (STRAIN 76-118)
404-433
461-510
564-591
738-765
905-946
1993-

2020

PRRPL_HRSVA
RNA POLYMERASE BETA
HUMAN RESPIRTAORY SYNCYTIAL VIRUS
103-192
210-237
667-694
788-815
1007-
1138-
1453-
1775-
2062-

SUBUNIT
(STRAIN A2)

1034
1165
1480
1803
2089

PRRPL_MABVM
RNA-DIRECTED RNA
MARBURG VIRUS (STRAIN MUSOKE)
991-1018
1143-
1490-
1811-
2029-
2216-

POLYMERASE

1170
1524
1838
2067
2266

PRRPL_MABVP
RNA-DIRECTED RNA
MARBURG VIRUS (STRAIN POPP)
991-1018
1490-
2239-

POLYMERASE

1524
2267

PRRPL_MEASE
RNA POLYMERASE BETA
MEASLES VIRUS (STRAIN EDMONSTON)
95-122
196-223
2121-

SUBUNIT

2148

PRRPL_MUMPM
RNA POLYMERASE BETA
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
111-142
780-807
1602-

SUBUNIT

1632

PRRPL_NDVB
RNA POLYMERASE BETA
NEWCASTLE DISEASE VIRUS (STRAIN
250-284
477-504
1979-

SUBUNIT
BEAUDETTE C/45)

2013

PRRPL_PI2HT
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN
322-349
1564-
1687-
1901-

SUBUNIT
TOSHIBA)

1598
1721
1946

PRRPL_PI3H4
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN
52-86
136-163
608-638
1081-
1994-
2115-

SUBUNIT
NIH 47885)

1123
2036
2142

PRRPL_PUUMH
RNA-DIRECTED RNA
PUUMALA VIRUS (STRAIN HALLNAS B1)
388-415
557-591
731-758
864-891
926-953
1940-
1998-

POLYMERASE

1971
2025

PRRPL_RABVP
RNA POLYMERASE BETA
RABIES VIRUS (STRAIN PV)
204-231
605-632
2068-

SUBUNIT

2123

PRRPL_RABVS
RNA POLYMERASE BETA
RABIES VIRUS (STRAIN SAD B19)
204-231
605-632
2068-

SUBUNIT

2123

PRRPL_RDV
RNA-DIRECTED RNA
RICE DWARF VIRUS
855-882

POLYMERASE

PRRPL_RVFVZ
RNA-DIRECTED RNA
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12)
1536-
1653-

POLYMERASE

1563
1687

PRRPL_SEND5
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
629-656
1082-
1729-
2145-

SUBUNIT

1116
1756
2180

PRRPL_SENDE
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN ENDERS)
449-476
902-936
1549-
1965-

SUBUNIT

1576
2000

PRRPL_SENDZ
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN 2)
629-656
1082-
1729-
2145-

SUBUNIT

1116
1756
2180

PRRPL_SEOU8
RNA-DIRECTED RNA
SEOUL VIRUS (STRAIN 80-39)
461-488
564-591
731-758
905-932

POLYMERASE

PRRPL_SV5WR
RNA POLYMERASE BETA
SIMIAN VIRUS 5 (STRAIN 21004-WR)
1096-
1250-
1680-
2120-

SUBUNIT

1123
1277
1710
2147

PRRPL_SYNV
RNA POLYMERASE BETA
SONCHUS YELLOW NET VIRUS
825-859
1092-
1490-
1973-
2080-

SUBUNIT

1119
1520
2000
2107

PRRPL_TSWVB
RNA-DIRECTEED RNA
TOMATO SPOTTED WILT VIRUS (BRAZILIAN
477-504
542-573
1119-
1195-
1330-
1415-
1671-
1857-
2083-

POLYMERASE
ISOLATE CPNH1/BR-01)

1150
1229
1357
1442
1698
1884
2110

2166-2193
2324-2368
2771-2798

PRRPL_UUK
RNA POLYMERASE
UUKUNIEMI VIRUS
142-187
1037-
1304-

1071
1331

PRRPL_VSVJH
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS (SEROTYPE
1530-
1809-

SUBUNIT
NEW JERSEY/STRAIN HAZELHU
1557
1836

PRRPL_VSVJO
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS (SEROTYPE
1205-
1809-

SUBUNIT
NEWE JERSEY/STRAIN OGDEN)
1232
1836

PRRPL_VSVSJ
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS
1540-
1768-

SUBUNIT
(STRAIN SAN JUAN)
1567
1798

PRRPO_ACLSV
RNA-DIRECTED RNA
APPLE HLOROTIC LEAF SPOT VIRUS
228-264
564-591

POLYMERASE

PRRPO_BWYVF
PUTATIVE RNA-DIR RNA POL
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
356-383

PRRPO_BYDV1
PUTATIVE RNA-DIR RNA POL
BARLEY YELLOW DWARF VIRUS
772-799

(ISOLATE MAV-PS1)

PRRPO_BYDVP
PUTATIVE RNA-DIR RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE PAV)
772-799

PRRPO_BYDVR
PUTATIVE RNA-DIR RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV)
772-799

PRRPO_CARMV
PUTATIVE RNA-DIR RNA POL
CARNATION MOTTLE VIRUS
93-127
277-304
667-694

PRRPO_CGMVS
PUTATIVE RNA-DIR RNA POL
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
387-414
1040-

(WATERMELON STRAIN SH)

1067

PRRPO_IBDV5
PUTATIVE RNA-DIR RNA POL
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
336-363
392-419

(STRAIN 52/70)

PRRPO_IBDVA
PUTATIVE RNA-DIR RNA POL
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
661-688
717-744

(STRAIN AUSTRALIAN 002-73)

PRRPO_IPNVJ
PUTATIVE RNA-DIR RNA POL
INFECTIOUS PANCREATIC NECROSIS VIRUS
773-800

(SEROTYPE JASPER)

PRRPO_IPNVS
PUTATIVE RNA-DIR RNA POL
INFECTIOUS PANCREATIC NECROSIS VIRUS
773-800

(SEROTYPE SP)

PRRPO_LYCVA
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
834-886
1052-

(STRAIN ARMSTRONG)

1079

PRRPO_PPMVS
PUTATIVE RNA-DIR RNA POL
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN)
402-429
709-736
1072-

1099

PRRPO_REOVD
RNA-DIRECTED RNA
REOVIRUS (TYPE 3/STRAIN DEARING)
61-88

POLYMERASE

PRRPO_REOVL
RNA-DIRECTED RNA
REOVIRUS (TYPE 1/STRAIN LANG)
61-88

POLYMERASE

PRRPO_ROTBR
RNA-DIR RNA POL
BOVINE ROTAVIRUS (STRAIN RF)
68-95
218-245
791-818

SUBUNIT VP1

PRRPO_ROTBU
RNA-DIR RNA POL
BOVINE ROTAVIRUS (STRAIN UK)
65-95
218-245
791-841
975-1002

SUBUNIT VP1

PRRPO_ROTPC
RNA-DIR RNA POL
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
3-44
75-102
363-390
543-585

SUBUNIT VP1

PRRPO_ROTPG
RNA-DIR RNA POL
PORCINE ROTAVIRUS (STRAIN GOTTFRIED
65-95
102-129
791-839
973-1002

SUBUNIT VP1

PRRPO_ROTS1
RNA-DIR RNA POL
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
65-95
791-839
975-1002

SUBUNIT VP1

PRRPO_SCVLA
RNA-DIRECTED RNA

SACCHAROMYCES CEREVISIAE VIRUS L-A
147-188

POLYMERASE

PRRPO_TACV
RNA POLYMERASE
TACARIBE VIRUS
163-204
241-271
1107-
1978-

1134
2008

PRRPO_TMGMV
PUTATAIVE RNA-DIR RNA POL
TOBACCO MILD GREEN MOSAIC VIRUS
230-257
1316-
1397-

(TMV STRAIN U2)

1343
1424

PRRPP_BRSVA
RNA POLYMERASE ALPHA
BOVINE RESPIRATORY SYNCYTIAL VIRUS
99-133

SUBUNIT
(STRAIN A51908)

PRRPP_CDVO
RNA POLYMERASE ALPHA
CANINE DISTEMPER VIRUS (STRAIN
315-370

SUBUNIT
ONDERSTEPOORT)

PRRPP_HRSV
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141

SUBUNIT

PRRPP_HRSV1
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141

SUBUNIT
(SUBGROUP B/STRAIN 18537)

PRRPP_HRSVA
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141

SUBUNIT
(STRAIN A2)

PRRPP_HRSVL
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141

SUBUNIT
(SUBGROUP A/STRAIN LONG)

PRRPP_MEASE
RNA POLYMERASE ALPHA
MEASLES VIRUS (STRAIN EDMONSTON)
315-370

SUBUNIT

PRRPP_MEASI
RNA POLYMERASE ALPHA
MEASLES VIRUS (STRAIN IP-3-CA)
315-370

SUBUNIT

PRRPP_MEASY
RNA POLYMERASE ALPHA
MEASELS VIRUS (STRAIN YAMAGATA-1)
315-370

SUBUNIT

PRRPP_PI1HB
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C35)
84-111
234-261
375-416

SUBUNIT

PRRPP_PI1HC
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
84-111
234-261
375-416

SUBUNIT

PRRPP_PI1HD
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN
84-111
232-262
375-416

SUBUNIT
CI-5/73)

PRRPP_PI1HE
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN
84-111
244-271
375-416

SUBUNIT
CI-14/83)

PRRPP_PI2H
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2 VIRUS
167-194
222-256

SUBUNIT

PRRPP_PI2HT
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2 VIRUS
167-194
222-256

SUBUNIT
(STRAIN TOSHIBA)

PRRPP_PI3B
RNA POLYMERASE ALPHA
BOVINE PARAINFLUENZA 3 VIRUS
34-91
255-282
285-314

SUBUNIT

PRRPP_PI3H4
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 3 VIRUS
114-144
269-299

SUBUNIT
(STRAIN NIH 47885)

PRRPP_PI4HA
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 4A VIRUS
4-38

SUBUNIT
(STRAIN TOSHIBA)

PRRPP_RABVP
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN PV)
93-127

SUBUNIT

PRRPP_SEND5
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
330-357
379-420

SUBUNIT

PRRPP_SEND6
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN 6/94)
330-357
379-420

SUBUNIT

PRRPP_SENDF
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN FUSHIMI)
330-357
379-420

SUBUNIT

PRRPP_SENDH
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN HARIS)
330-357
379-420

SUBUNIT

PRRPP_SENDZ
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN 2)
330-357
379-420

SUBUNIT

PRRP_SV5
RNA POLYMERASE ALPHA
SIMIAN VIRUS 5 (STRAIN W3)
205-232
236-263

SUBUNIT

PSODC_VACCV
SUPEROXIDE DISMUTASE
VACCINIA VIRUS (STRAIN WR)
72-99

LIKE PROTEIN

PSODC_VARV
SUPEROXIDE DISMUTASE
VARIOLA VIRUS
72-99

LIKE PROTEIN

PSPHR_AMEPV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS
91-118
140-167
227-261
361-390

PSPI1_MYXVL
SERPIN 1
MYXOMA VIRUS (STRAIN LAUSANNE)
286-313

PSPI2_VACCV
SERINE PROTEINASE
VACCINIA VIRUS (STRAIN WR)
59-86

INHIBITOR 2

PSPIA_VACCC
SERINE PROTEASE INH 2
VACCINIA VIRUS (STRAIN COPENHAGEN)
18-65

HOMOLOG

PT2C2_CHVP1
TYPE II RESTRICTION ENZYME

PARAMECIUM BURSARIA CHLORELLA VIRUS 1
16-43

CVIAII

PTAA2_VACCV
TRANS-ACTIVATOR
VACCINIA VIRUS
95-133

PROTEIN A2

PTAG8_FOWPV
TRAN-ACTIVATOR
FOWLPOX VIRUS
3-51

PROTEIN FP0

PTAG8_VACCV
TRANS-ACTIVATOR
VACCINIA VIRUS
3-30

PROTEIN GK1

PTAG8_VARV
TRANS-ACTIVATOR
VARIOLA VIRUS
3-30

PROTEIN GK-1

PTALA_BFDV
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING DISEASE VIRUS
291-318

PTALA_POVBO
LARGE T ANTIGEN
BOVINE POLYOMAVIRUS
502-537

PTALA_POVHA
LARGE T ANTIGEN
HAMSTER POLYOMAVIRUS
587-621

PTALA_POVLY
LARGE T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
224-258
616-684

PTALA_POVM3
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
513-540

PTALA_POVMA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
511-538

PTALA_POVMC
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN CRAWFORD
508-535

SMALL-PLAQUE)

PTATR_NPVAC
TRANS-ACT TRANS REG

AUTOGRAPHA CALIFORNICA NUCLEAR
407-434
489-523
532-559

PROTEIN
POLYHEDROSIS VIRUS

PTATR_NPVBM
TRANS-ACT TRANS REG
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
412-439
494-528
537-564

PROTEIN

PTATR_NPVOP
TRANS-ACT TRANS REG

ORGYIA PSEUDOTSUGATA MULTICAPSID
512-554

PROTEIN
POLYHEDROSIS VIRUS

PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
145-172
1215-
1344-
1876-

1242
1371
1903

PTEGU_HCMVA
PROBABLE LARGE TEGUMENT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
1251-
2202-

PROTEIN

1281
2229

PTEGU_HSV11
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
667-694
1673-

1710

PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
102-129
228-262
567-611
962-993
1098-
1661-
1884-

1181
1688
1911

PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
229-256
566-593
1205-

1232

PTEGU_HSVSA
PROBABLE LARGE TEGUMENT
HERPESVIRUS SAIMIRI (STRAIN 11)
524-607
672-700
777-814
846-898
949-986
990-1017
1467-
2102-

PROTEIN

1497
2135

PTEGU_VZVD
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
1121-
1579-

1158
1609

PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
375-413

PTMAF_AVIS4
TRANSFORMING PROTEIN MAF
AVIAN MUSCULOAPONEUROTIC FIBROSARCOMA
302-336

VIRUS AS42

PTOP1_SFVKA
DNA TOPOISOMERASE I
SHOPE FIBROMA VIRUS (STRAIN KASZA)
38-65
132-176

PTOP1_VACCV
DNA TOPOISOMERASE I
VACCINIA VIRUS
38-65

PTOP1_VARV
DNA TOPOISOMERASE I
VARIOLA VIRUS
38-65

PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI
902-936

LIL 20/1)

PTYSY_HSVAT
THYMIDYLATE SYNTHASE
HERPESVIRUS ATELES
116-143

PTYSY_HSVSA
THYMIDYLATE SYNTHASE
HERPESVIRUS SAIMIRI (STRAIN 11)
120-147

PUL06_EBV
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
115-142
313-340
542-569

PUL06_HSV11
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
586-613

PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
640-667

PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
15-42
302-358
368-402

PUL08_HCMVA
HYPOTHETICAL PROTEIN UL8
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
6-47

PUL11_EBV
HYPOTHETICAL PROTEIN BBLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
15-42

PUL13_HCMVA
HYPOTHETICAL PROTEIN UL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
347-374

PUL14_HSVEB
HYPOTHETICAL GENE 48
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
247-286

PROTEIN

PUL14_VZVD
HYPOTHETICAL GENE 46
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
64-101

PROTEIN

PUL16_HCMVA
HYPOTHETICAL PROTEIN UL16
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
81-112

PUL20_HCMVA
HYPOTH PRO UL20 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-61

PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
44-71

PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
380-407

PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STAIN 11)
34-61
204-231
362-389

PUL31_HCMVA
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
167-194
254-284

PUL32_HSVEB
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPESVIRUS TYPE 1
345-375

PUL34_HSV11
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
116-143

PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
208-235

PUL34_VZVD
VIRION GENE 24 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
112-139

PUL35_HCMVA
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
535-562

PUL37_HSV11
PROTEIN UL37
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
470-497
853-884

PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
715-749
987-1014

PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
31-65
685-737

PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
107-134
485-512
719-746
976-1003

PUL41_VZVD
HOST SHUTOFF VIRION
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
330-364

PROTEIN

PUL42_HSV11
DNA-BINDING PROTEIN UL42
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
231-258

PUL43_VZVD
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
129-156
312-349

PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
114-148
448-485
763-790
802-853

PUL47_HSV11
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
448-515

PUL47_HSV1F
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
488-515

PUL47_HSVE4
97 KD ALPHA TRANS-
EQUINE HERPESVIRUS TYPE 4
190-217

INDUCING PROTEIN

PUL50_HCMVA
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
159-186

PUL52_EBV
PROB DNA REPLICATION
EPSTEIN-BARR VIRUS (STRAIN B95-8)
185-212
787-814

PROTEIN BSLF1

PUL52_HSVEB
DNA REPLICATION
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB41′)
193-220
943-970

PROTEIN UL52

PUL52_HSVSA
PROB DNA REP GENE 56
HERPESVIRUS SAIMIRI (STRAIN 11)
130-157

PROTEIN

PUL52_VZVD
PROB DNA REP GENE 6
VARICELLA-ZOSTER VIRUS
301-337

PROTEIN
(STRAIN DUMAS)

PUL59_HCMVA
HYPOTHETICAL PROTEIN UL59
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-101

PUL70_HCMVA
PROB DNA REP PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
65-92

UL70

PUL73_HCMVA
UL73 GLYCOPROTEIN PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
5-73

PUL73_HSVSA
HYPOTHETICAL GENE 53
HERPESVIRUS SAIMIRI (STRAIN 11)
9-36

PROTEIN

PUL74_HCMVA
HYPOTHETICAL PROTEIN UL74
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
45-79

PROTEIN BSLF1

PUL87_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
409-436

B(C)RF1

PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
536-563
729-768

UGANDA-1102)

PUL87_HSVSA
HYPOTHETICAL GENE 24
HERPRESVIRUS SAIMIRI (STRAIN 11)
582-609

PROTEIN

PUL92_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
107-144
168-196

BDLF4

PUL92_HSVSA
HYPOTHETICAL GENE 31
HERPESVIRUS SAIMIRI (STRAIN 11)
92-122

PROTEIN

PUL93_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
26-53
314-381

PUL95_HCMVA
HYPOTHETICAL PROTEIN UL95
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
37-71

PUL95_HSV6U
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
73-100
105-134

UGANDA-1102)

PULA4_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
4-31
443-477

PULB9_HCMVA
HYPOTHETICAL PROTEIN UL119
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
33-78

PULD0_HCMVA
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
90-124

PUNG_HSVSA
URACIL-DNA GLYCOSYLASE
HERPESVIRUS SAIMIRI (STRAIN 11)
135-176

PUNG_SFVKA
URACIL-DNA GLYCOSYLASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
81-115

PUNG_VACCC
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
85-116
129-156

PUNG_VACCV
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN WR)
85-116
129-156

PUNG_VARV
URACIL-DNA GLYCOSYLASE
VARIOLA VIRUS
85-116

PUS09_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
20-47

HXLF3

PUS14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
277-308

HVLF4

PUS18_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
191-218

PV121_ASFL5
LIS 121-1 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN LIS57)
2-29

PV125_AMVLE
125 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE
702-729

LEIDEN)

PV137_ASFL5
LIS 137 PROTEIN
AFRICAN SWINEN FEVER VIRUS (STRAIN LIS57)
2-29

PV13K_TRVPL
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PLB)
59-86

PV143_NPVAC
HELICASE

AUTOGRAPHA CALIFORNICA NUCLEAR
496-560
945-972

POLYHEDROSIS VIRUS

PV16K_TRVPS
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PSG)
79-113

PV1A_BBMV
1A PROTEIN
BROAD BEAN MOTTLE VIRUS
23-54
710-737
840-868

PV1A_BMV
1A PROTEIN
BROME MOSAIC VIRUS
22-58
384-411
836-863
982-919

PV1A_CCMV
1A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
249-276

PV1A_CMVFN
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
11-38

PV1A_CMVO
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
11-38
864-902

PV1A_CMVQ
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
11-38

PV1A_PSVJ
1A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
4-38
372-399

PV1A_TAV
1A PROTEIN
TOMATO ASPERMY VIRUS
11-38
271-298
376-403
857-884

PV25K_NPVAC
25 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
4-31

PV29K_PEBV
29.6 KD PROTEIN
PEA EARLY BROWNING VIRUS
140-170

PV29K_TRVSY
29 KD PROTEIN
TOBACCO RATTLE VIRUS
170-197

PV29K_TRVTC
29 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
48-75

PV2A_BBMV
2A PROTEIN
BROAD BEAN MOTTLE VIRUS
301-328

PV2A_CCMV
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
178-205

PV2A_CMVFN
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
792-819

PV2A_PSVJ
2A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
325-352
717-751

PV2A_TAV
2A PROTEIN
TOMATO ASPERMY VIRUS
313-340
722-756

PV30K_HCMVE
30 KD MAJOR EARLY PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN
194-221

EISENHARDT)

PV30K_TRVTC
29.1 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
130-160

PV33P_ADE41
33 KD PHOSPHOPROTEIN
HUMAN ADENOVIRUS TYPE 41
15-42

PV362_ASFB7
K′362 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
75-102

PV363_ASFB7
D′363 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
3-30
172-199

PV3A_BMV
3A PROTEIN
BROME MOSAIC VIRUS
11-38

PV3A_CMVFN
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
222-252

PV3A_CMVM
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN M)
2171-252

PV3A_CMVO
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
222-253

PV3A_CMVY
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Y)
222-253

PV3B_IBVB
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
25-57

(STRAIN BEAUDETTE)

PV3A_IBVU5
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
29-56

(STRAIN UK/183/66)

PV3A_IBVB
3B PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
6-33

(STRAIN BEAUDETTE)

PV50K_BYDVP
50 KD PROTEIN
BARLEY YELLOW DWARF VIRUS (ISOLATE PAV)
119-146

PV51K_BWYVF
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
113-147
424-451

PV51K_BWYVG
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE GB1)
113-147
424-451

PV56K_PLRV1
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
124-151
438-472

PV56K_PLRVW
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
124-151
438-477

PV58K_BSMV
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
128-155

PV70K_PLRV1
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
110-140

PV70K_PLRVW
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
110-140

PV90K_AMVLE
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN)
107-134

PVA06_VACCC
PROTEIN A6
VACCINIA VIRUS (STRAIN COPENHAGEN)
157-216
250-277
283-310
314-355

PVA06_VACCV
PROTEIN A6
VACCINIA VIRUS (STRAIN WR)
156-215
249-276
282-309
313-354

PVA06_VARV
PROTEIN A6
VARIOLA VIRUS
157-216
250-277
283-310
314-355

PVA08_VACCC
PROTEIN A8
VACCINIA VIRUS (STRAIN COPENHAGEN)
176-206

PVA08_VARV
PROTEIN A8
VARIOLA VIRUS
176-206

PVA09_VARV
PROTEIN A9
VARIOLA VIRUS
60-95

PVA11_VACCC
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
219-283

PVA11_VARV
PROTEIN A11
VARIOLA VIRUS
220-284

PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
440-467

PVA20_VACCC
PROTEIN A20
VACCINIA VIRUS (STRAIN COPENHAGEN)
8-67
330-357

PVA20_VARV
PROTEIN A20
VARIOLA VIRUS
8-67
330-357

PVA22_VACCC
PROTEIN A22
VACCINIA VIRUS (STRAIN COPENHAGEN)
45-72

PVA22_VARV
PROTEIN A22
VARIOLA VIRUS
56-83

PVA23_VACCC
PROTEIN A23
VACCINIA VIRUS (STRAIN COPENHAGEN)
95-144

PVA23_VARV
PROTEIN A23
VARIOLA VIRUS
95-144

PVA28_VACCV
PROTEIN A28
VACCINIA VIRUS (STRAIN WR)
22-49

PVA28_VARV
PROTEIN A28
VARIOLA VIRUS
22-49

PVA30_VACCV
PROTEIN A30
VACCINIA VIRUS (STRAIN WR)
12-55

PVA31_VACCC
PROTEIN A31
VACCINIA VIRUS (STRAIN COPENHAGEN)
88-115

PVA31_VARV
PROTEIN A31
VARIOLA VIRUS
88-122

PVA34_VACCC
PROTEIN A34
VACCINIA VIRUS (STRAIN COPENHAGEN)
87-114

PVA34_VACCV
PROTEIN A34
VACCINIA VIRUS (STRAIN WR)
87-114

PVA34_VARV
PROTEIN A34
VARIOLA VIRUS
87-114

PVA36_VACCV
PROTEIN A36 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
120-155

PVA36_VARV
PROTEIN A36 PRECURSOR
VARIOLA VIRUS
127-154

PVA38_VACCC
PROTEIN A38
VACCINIA VIRUS (STRAIN COPENHAGEN)
44-81

PVA38_VACCV
PROTEIN A38
VACCINIA VIRUS (STRAIN WR)
44-81

PVA38_VARV
PROTEIN A38
VARIOLA VIRUS
44-91

PVA39_VACCC
PROTEIN A39
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-71
155-182

PVA39_VACCV
PROTEIN A39
VACCINIA VIRUS (STRAIN WR)
75-109
193-220

PVA43_VACCC
PROTEIN A43
VACCINIA VIRUS (STRAIN COPENHAGEN)
145-172

PVA43_VACCV
PROTEIN A43
VACCINIA VIRUS (STRAIN WR)
145-172

PVA43_VARV
PROTEIN A43
VARIOLA VIRUS
146-173

PVA47_VACCC
PROTEIN A47
VACCINIA VIRUS (STRAIN COPENHAGEN)
143-184

PVA47_VACCV
PROTEIN A47
VACCINIA VIRUS (STRAIN WR)
143-184

PVA47_VARV
PROTEIN A47
VARIOLA VIRUS
142-184

PVA49_VACCC
PROTEIN A49
VACCINIA VIRUS (STRAIN COPENHAGEN)
61-91

PVA49_VACCV
PROTEIN A49
VACCINIA VIRUS (STRAIN WR)
61-91

PVA49_VARV
PROTEIN A49
VARIOLA VIRUS
61-91

PVA55_VACCC
PROTEIN A55
VACCINIA VIRUS (STRAIN COPENHAGEN)
55-82
126-156
435-462

PVA55_VACCV
PROTEIN A55
VACCINIA VIRUS (STRAIN WR)
55-82
126-156
435-462

PVAL1_BCTV
AL1 PROTEIN
BEET CURLY TOP VIRUS
22-49

PVAL3_CLVK
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST
79-106

KENYAN 844)

PVAL3_CLVN
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
79-106

PVAL3_SLCV
AL3 PROTEIN
SQUASH LEAF CURL VIRUS
101-128

PVAL3_TYLCV
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
79-129

PVAT_CAMVC
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
22-70
93-129

PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
22-70

PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
22-70
93-129

PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
22-70
93-129

PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
22-70
93-129

PVAT_CAMVS
APHID TRANSMISSION PROTEIN

22-70
93-130

PVAT_CAMVW
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
36-70

PVAT_CERV
APHID TRANSMISSION PROTEIN
CARNATION ETCHED RING VIRUS
102-138

PVAT_FMVD
APHID TRANSMISSION PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
52-82
103-130

PVB03_VACCV
PROTEIN B3
VACCINIA VIRUS (STRAIN WR)
108-135

PVB04_VACCC
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)
92-123
182-211
286-313
324-361

PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
92-123
182-211
286-313
324-361

PVB04_VARV
PROTEIN B4
VARIOLA VIRUS
89-127
182-211
286-313
324-361

PVB05_VACC0
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN LC16MO)
254-284

PRO PREC

PVB05_VACCC
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN COPENHAGEN)
254-284

PRO PREC

PVB05_VACCL
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN LISTER)
254-284

PRO PREC

PVB05_VACCV
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN WR)
254-284

PRO PREC

PVB07_VACCV
PROTEIN B7 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
28-62

PVB08_VACCC
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
26-53

PVB08_VACCV
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
26-53

PVB11_VACCC
PROTEIN B11
VACCINIA VIRUS (STRAIN COPENHAGEN)
21-54

PVB11_VACCV
PROTEIN B11
VACCINIA VIRUS (STRAIN WR)
5-38

PVB16_COWPX
IL-1 BIND PRO PRECURSOR
COWPOX VIRUS
113-140

PVB17_VACCC
PROTEIN B17
VACCINIA VIRUS (STRAIN COPENHAGEN)
258-285

PVB17_VACCV
PROTEIN B17
VACCINIA VIRUS (STRAIN WR)
258-285

PVB18_VACCC
PROTEIN B18
VACCINIA VIRUS (STRAIN COPENHAGEN)
337-375

PVB18_VACCV
PROTEIN B18
VACCINIA VIRUS (STRAIN WR)
337-375

PVB18_VARV
PROTEIN B18
VARIOLA VIRUS
337-378

PVB19_VACCC
SURFACE ANTIGEN S
VACCINIA VIRUS (STRAIN COPENHAGEN)
182-212

PRECURSOR

PVB19_VACCD
SURFACE ANTIGEN S
VACCINIA VIRUS (STRAIN DAIREN I)
180-210

PRECURSOR

PVB19_VACCV
SURFACE ANTIGEN S
VACCINIA VIRUS (STRAIN WR)
180-210

PRECURSOR

PVB19_VARV
SURFACE ANTIGEN S
VARIOLA VIRUS
180-210

PRECURSOR

PVB20_VACCC
PROTEIN B20
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-82

PVB21_VACCV
PROTEIN B21
VACCINIA VIRUS (STRAIN WR)
64-91

PVBL1_BGMV
BL1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
120-147
248-275

PVBL1_CLVK
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST
118-145

KENYAN 844)

PVBL1_CLVN
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
118-145

PVBL1_PYMVV
BL1 PROTEIN
POTATO YELLOW MOSIAC VIRUS (ISOLATE
120-147

VENEZUELA)

PVC02_VACCC
PROTEIN C2
VACCINIA VIRUS (STRAIN COPENHAGEN)
405-432

PVC02_VACCV
PROTEIN C2
VACCINIA VIRUS (STRAIN WR)
41-71
405-432

PVC04_SFVKA
PROTEIN C4
SHOPE FIBROMA VIRUS (STRAIN KASZA)
209-236
484-515

PVC04_VACCC
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-46

PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
12-16

PVC04_VARV
PROTEIN C4
VARIOLA VIRUS
12-46

PVC05_SFVKA
HYPOTHETICAL PROTEIN C5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
85-125
152-179

PVC05_VACCC
PROTEIN C5
VACCINIA VIRUS (STRAIN COPENHAGEN)
38-65

PVC05_VACCV
PROTEIN C5
VACCINIA VIRUS (STRAIN WR)
38-65

PVC05_VARV
PROTEIN C5
VARIOLA VIRUS
36-66

PVC07_VACCV
PROTEIN C7
VACCINIA VIRUS (STRAIN WR)
80-111

PVC07_VARV
PROTEIN C7
VARIOLA VIRUS
80-111

PVC09_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
42-69
82-116
178-205
252-279
289-325
575-605

PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
42-69
82-116
178-205
252-279
289-325
575-605

PVC10_VACCC
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
136-180

PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
136-163

PVC10_VARV
PROTEIN C10
VARIOLA VIRUS
136-163

PVC13_SFVKA
PROTEIN C13
SHOPE FIBROMA VIRUS (STRAIN KASZA)
3-30
39-66
137-182
206-240

PVC17_VACCC
PROTEIN C17/B23
VACCINIA VIRUS (STRAIN COPENHAGEN)
111-152

PVC18_VACCC
PROTEIN C18/B24
VACCINIA VIRUS (STRAIN COPENHAGEN)
40-74

PVC19_SFVKA
PROTEIN C19
SHOPE FIBROMA VIRUS (STRAIN KASZA)
56-97

PVC20_VACCC
PROTEIN C20/B26
VACCINIA VIRUS (STRAIN COPENHAGEN)
72-99

PVC22_VARV
PROTEIN C22/B28 HOMOLOG
VARIOLA VIRUS
299-326

PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
847-874

PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
136-170
355-382

UGANDA-1102)

PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
769-799

PVCG3_NPVAC
DNA-BINDING PROTIEN

AUTOGRAPHA CALIFORNICA NUCLEAR
133-165
199-248

POLYHEDROSIS VIRUS

PVCOM_ADE02
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 2
88-115

PVCOM_ADE05
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 5
87-114

PVD05_FOWP1
92.6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
6-33
184-211
321-348

PVD05_VACCC
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
240-267
333-360

PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
240-267

PVD05_VARV
PROTEIN D5
VARIOLA VIRUS
240-267

PVD09_VACCC
PROTEIN D9
VACCINIA VIRUS (STRAIN COPENHAGEN)
123-150

PVD09_VACCV
PROTEIN D9
VACCINIA VIRUS (STRAIN WR)
123-150

PVD09_VARV
PROTEIN D9
VARIOLA VIRUS
123-160

PVD10_SFVKA
PROTEIN D10
SHOPE FIBROMA VIRUS (STRAIN KASZA)
18-52

PVDBP_CERV
DNA-BINDING PROTEIN
CARNATION ETCHED RING VIRUS
2-35

PVE02_VARV
PROTEIN E2
VARIOLA VIRUS
282-322

PVE06_VACCC
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
89-116
437-464

PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
89-116
437-464

PVE06_VARV
PROTEIN E6
VARIOLA VIRUS
89-116
367-394
437-464

PVE1_HPV18
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
60-87

PVE1_HPV2A
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
21-48

PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
180-207

PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
103-130

PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
55-89

PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
25-59

PVE1_HPV47
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
146-173

PVE1_HPV57
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
21-48

PVE26_NPVAC
EARLY 25.9 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
72-113

POLYHEDROSIS VIRUS

PVE2_CRPVK
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS
5-34

(STRAIN KANSAS)

PVE2_HPV05
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
17-51

PVE2_HPV13
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
157-184
334-361

PVE2_HPV16
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
61-105
312-342

PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
313-340

PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
159-186

PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
159-193

PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
304-331

PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
158-192
327-354

PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
7-34
323-357

PVE2_HPV47
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
17-51
148-175
276-303

PVE2_HPV51
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
137-184

PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
166-193

PVE2_HPV58
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
2-36
309-336

PVE2_HPV5B
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
17-51

PVE2_PAPVE
PROBABLE E2 PROTEIN
EUROPEAN ELK PAPILLOMA VIRUS
120-150

PVE2_PCPV1
E2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMA VIRUS TYPE 1
267-294
327-361

PVE4_HPV05
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
202-229

PVE4_HPV11
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
81-108

PVE4_HPV16
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
66-93

PVE4_HPV18
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
59-86

PVE4_HPV31
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
75-102

PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
63-97

PVE4_HPV5B
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
202-229

PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
30-60

PVE5A_HPV6B
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
30-60

PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6C
30-60

PVE5_HPV35
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
27-54

PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
11-41

PVE5_PCPV1
PROBABLE E5 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
35-62

PVE6_HPV18
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
75-102

PVE6_HPV31
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
69-96

PVE6_HPV39
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
71-102

PVE6_HPV41
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
119-146

PVE6_HPV45
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 45
75-102

PVE6_HPV51
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
72-99

PVE6_HPVME
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE ME180
71-102

PVE94_NPVAC
EARLY 94 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
620-647

POLYHEDROSIS VIRUS

PVEF_GVTN
VIRAL ENHANCING FACTOR
TRICHOPLUSIA N1 GRANULOSIS VIRUS
411-438

PVENV_DHV11
ENVELOPE GLYCOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/61)
318-366

PRECURSOR

PVENV_EAV
PROBABLE ENVELOPE PROTEIN
EQUINE ARTERITIS VIRUS
120-147

PVENV_THOGV
ENVELOPE GLYCOPROTEIN
THOGOTO VIRUS
313-347

PRECURSOR

PVF03_VACCC
PROTEIN F3
VACCINIA VIRUS (STRAIN COPENHAGEN)
71-110
185-212

PVF03_VACCV
PROTEIN F3
VACCINIA VIRUS (STRAIN WR)
71-110
185-212

PVF05_VACCP
36 KD MAJOR MEMBRANE
VACCINIA VIRUS (STRAIN L-IVP)
33-60

PRO PRECURSO

PVF05_VACCV
36 KD MAJOR MEMBRANE
VACCINIA VIRUS (STRAIN WR)
33-60

PRO PRECURSO

PVF06_VARV
PROTEIN F6
VARIOLA VIRUS
10-44

PVF11_VACCC
PROTEIN F11
VACCINIA VIRUS (STRAIN COPENHAGEN)
274-321

PVF11_VACCP
PROTEIN F11
VACCINIA VIRUS (STRAIN L-IVP)
270-317

PVF11_VARV
PROTEIN F11
VARIOLA VIRUS
274-321

PVF12_VACCC
PROTEIN F12
VACCINIA VIRUS (STRAIN COPENHAGEN)
10-37
113-140
554-581

PVF12_VACCP
PROTEIN F12
VACCINIA VIRUS (STRAIN L-IVP)
10-37
113-140
554-581

PVF12_VARV
PROTEIN F12
VARIOLA VIRUS
10-37
202-236
554-581

PVF16_VACCC
PROTEIN F16
VACCINIA VIRUS (STRAIN COPENHAGEN)
35-62
152-179

PVF16_VACCP
PROTEIN F16
VACCINIA VIRUS (STRAIN L-IVP)
35-62
152-179

PVF16_VARV
PROTEIN F16
VARIOLA VIRUS
35-62
149-179

PVFP4_FOWPV
PROTEIN FP4
FOWLPOX VIRUS
146-173

PVFUS_ORNFNZ
10 KD FUSION PROTEIN
ORF VIRUS (STRAIN NZ2)
59-86

PVFUS_VACCC
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-64

PVFUS_VACCV
KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
37-64

PVG01_VACCC
PROTEIN G1
VACCINIA VIRUS (STRAIN COPENHAGEN)
225-252
301-335

PVG01_VACCV
PROTEIN G1
VACCINIA VIRUS (STRAIN WR)
164-191
240-274

PVG01_VARV
PROTEIN G1
VARIOLA VIRUS
225-252
301-335

PVG02_VACCV
ISATIN-B-TSC DEP PROTEIN
VACCINIA VIRUS (STRAIN WR)
96-123

PVG02_VARV
ISATIN-B-TSC DEP PROTEIN
VARIOLA VIRUS
96-123

PVG03_HSVEB
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
146-176

PVG03_HSVEK
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
146-176

KENTUCKY A)

PVG05_VACCC
PROTEIN G5
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-75
131-161
225-289
355-389

PVG05_VARV
PROTEIN G5
VARIOLA VIRUS
48-75
124-161
255-289
355-389

PVG07_HSV11
HYPOTH GENE 7 MEMB PRO
ICTALURID HERPES VIRUS 1
71-98

PVG09_VACCC
PROTEIN F1
VACCINIA VIRUS (STRAIN COPENHAGEN)
308-338

PVG09_VACCV
PROTEIN F1
VACCINIA VIRUS (STRAIN WR)
271-301

PVG09_VARV
PROTEIN F1
VARIOLA VIRUS
308-338

PVG12_SPVIR
GENE 12 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
11-45

PVG17_HSV11
HYPOTHETICAL GENE 17
ICTALURID HERPESVIRUS 1
177-204

PROTEIN

PVG18_HSV11
HYPOTHETICAL GENE 18
ICTALURID HERPESVIRUS 1
174-208

PROTEIN

PVG1_SPVIR
CAPSID PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
260-287

PVG1_SPV4
CAPSID PROTEIN
SPIROPLASMA VIRUS 4
287-314
383-410

PVG22_HSV11
HYPOTHETICAL GENE 22
ICTALURID HERPESVIRUS 1
373-400
581-622
668-705
766-824

PROTEIN

PVG24_HSV11
HYPOTHETICAL GENE 24
ICTALURID HERPESVIRUS 1
31-58

PROTEIN

PVG28_HSV11
HYPOTHETICAL GENE 28
ICTALURID HERPESVIRUS 1
253-290
497-528

PROTEIN

PVG2R_AMEPV
HYPOTHETICAL G2R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
33-64
91-118

PVG2_SPV1R
GENE 2 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
285-326

PVG2_SPV4
GENE 2 PROTEIN
SPIROPLASMA VIRUS 4
146-173
175-205
262-310

PVG34_HSV11
HYPOTHETICAL GENE 34
ICTALURID HERPESVIRUS 1
95-122

PROTEIN

PVG37_HSV11
HYPOTHETICAL GENE 37
ICTALURID HERPESVIRUS 1
442-469

PROTEIN

PVG39_HSV11
HYPOTHETICAL GENE 39
ICTALURID HERPESVIRUS 1
651-678
1088-

PROTEIN

1115

PVG3L_AMEPV
HYPOTHETICAL G3L PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
2-29

PVG3_SPVIR
GENE 3 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
15-49

PVG3_SPV4
GENE 3 PROTEIN
SPIROPLASMA VIRUS 4
18-52
87-148

PVG45_HSVSA
HYPOTHETICAL GENE 45
HERPESVIRUS SAIMIRI (STRAIN 11)
138-165

PROTEIN

PVG46_HSV11
PROBABLE MAJOR
ICTALURID HERPESVIRUS 1
142-169
346-373
897-924
973-1007

GLYCOPROTEIN

PVG48_HSVSA
HYPOTHETICAL GENE 48
HERPESVIRUS SAIMIRI (STRAIN 11)
360-394

PROTEIN

PVG4R_AMEPV
G4R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
4-31

PVG4_SPV1R
GENE 4 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
116-146

PVG51_HSV11
HYPOTH GENE 51 MEMBRANE
ICTALURID HERPESVIRUS 1
34-61
87-114

PROTEIN

PVG52_HSVSA
HYPOTHETICAL GENE 52
HERPESVIRUS SAIMIRI (STRAIN 11)
47-74

PROTEIN

PVG56_HSV11
HYPOTHETICAL GENE 56
ICTALURID HERPESVIRUS 1
582-609

PROTEIN

PVG5_SPV1R
GENE 5 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
65-92

PVG5_SPV4
GENE 5 PROTEIN
SPIROPLASMA VIRUS 4
56-83

PVG63_HSV11
HYPOTHETICAL GENE 63
ICTALURID HERPESVIRUS 1
550-584

PROTEIN

PVG64_HSV11
HYPOTHETICAL GENE 64
ICTALURID HERPESVIRUS 1
447-504

PROTEIN

PVG65_HSV11
HYPOTHETICAL GENE 65
ICTALURID HERPESVIRUS 1
1213-

PROTEIN

1254

PVG66_HSV11
HYPOTHETICAL GENE 66
ICTALURID HERPESVIRUS 1
362-406

PROTEIN

PVG67_HSV11
HYPOTHETICAL GENE 67
ICTALURID HERPESVIRUS 1
1342-

PROTEIN

1369

PVG68_HSV11
HYPOTHETICAL GENE 68
ICTALURID HERPESVIRUS 1
261-288

PROTEIN

PVG72_HSV11
HYPOTHETICAL GENE 72
ICTALURID HERPESVIRUS 1
447-481

PROTEIN

PVG75_HSV11
HYPOTHETICAL GENE 75
ICTALURID HERPESVIRUS 1
388-422

PROTEIN

PVG76_HSV11
HYPOTHETICAL GENE 76
ICTALURID HERPESVIRUS 1
200-227

PROTEIN

PVG7_SPV4
GENE 7 PROTEIN
SPIROPLASMA VIRUS 4
14-44

PVGF1_IBVB
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
1230-
2408-

1260
2435

PVGL2_CVBF
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
399-426
642-676
1022-
1278-

1084
1305

PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN L9)
399-426

1022-
1278-

1084
1305

PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
399-426
642-676
1022-
1278-

1084
1305

PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
399-426
642-676
1022-
1278-

1084
1305

PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
399-426
642-676
1022-
1278-

1084
1305

PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN VACCINE)
399-426
642-676
1022-
1278-

1084
1305

PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR
HUMAN CORONAVIRUS (STRAIN 229E)
770-797
809-875
1056-

1112

PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN
643-684
1030-

WILD TYPE 4)

1092

PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN A59)
36-63
591-632
978-1040

PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN
643-684
1030-

JHMV/VARIANT CL-2)

1092

PVGL2_CVMJH
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN JHM)
502-543
889-951

PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
692-733
1072-
1353-

CORONAVIRUS (STRAIN FS722

1145
1389

PVGL2_CVPM1
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
692-733
1069-
1353-

CORONAVIRUS (STRAIN MILLE

1145
1389

PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
73-107
690-731
1067-
1351-

CORONAVIRUS (STRAIN PUR46

1143
1387

PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-107
690-731
1067-1143
1351-

CORONAVIRUS (STRAIN PURD

1387

PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS (STRAIN
468-509
845-921
1129-

86/137004/BRITISH ISOLAT

1165

PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
468-509
845-921
1129-

(STRAIN RM4)

1165

PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-107
690-731
1067-1143
1351-

CORONAVIRUS (STRAIN NEB72

1387

PVGL2_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
68-102

GLYCOPROTEIN

PVGL2_FIPV
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS
189-233
454-481
709-736
1072-
1356-

(STRAIN 79-1146)

1148
1392

PVGL2_1BV6
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
809-836
876-903
1057-

(STRAIN 6/82)

1091

PVGL2_1BVB
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
808-835
875-902
1056-

(STRAIN BEAUDETTE)

1090

PVGL2_IBVD2
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
809-836
876-903
1057-

(STRAIN D274)

1091

PVGL2_IBVK
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
808-835
875-902
1056-

(STRAIN KB8523)

1090

PVGL2_IBVM
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
808-835
875-902
1056-

(STRAIN M41)

1090

PVGLB_EBV
GLYCOPROTEIN GP110
EPSTEIN-BARR VIRUS (STRAIN B95-8)
95-122
631-658

PRECURSOR

PVGLB_HCMVA
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
25-88
397-424
440-467
851-878

PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
50-88
397-424
435-462
852-879

PVGLB_HSVB1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
427-454

PVGLB_HSVB2
GLYCOPROTEIN B-1
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
447-474

PRECURSOR

PVGLB_HSVE1
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (ISOLATE HVS25A)
443-470
934-961

PVGLB_HSVE4
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 4
486-513
616-643

PVGLB_HSVEA
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1)
443-470
934-961

PVGLB_HSVEB
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
443-470
934-961

PVGLB_HSVEL
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D)
443-470
933-960

PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B)
93-120
352-379

PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
381-408
441-475

PVGLC_HSV11
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
469-510

PVGLC_HSV1K
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
469-510

PVGLC_HSVEB
GLYCOPROTEIN C PRECURSOR
EQUINE HERPESVIRUS TYPE 1
124-151

PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
295-322

PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN SCOTT)
295-322

PVGLE_HSV2
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
111-148

PVGLF_BRSVA
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
216-243
442-469
486-531

PRECURSOR
(STRAIN A51908)

PVGLF_BRSVC
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
216-243
444-471
486-533

PRECURSOR
(STRAIN COPENHAGEN)

PVGLF_BRSVR
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
216-243
444-469
488-533

PRECURSOR
(STRAIN RB94)

PVGLF_CDVO
FUSION GLYCOPROTEIN
CANINE DISTEMPER VIRUS (STRAIN
252-293
340-367

PRECURSOR
ONDERSTEPOORT)

PVGLF_HRSV1
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-203
442-471
488-515

PRECURSOR
(SUBGROUP B/STRAIN 18537)

PVGLF_HRSVA
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
213-243
488-518

PRECURSOR
(STRAIN A2)

PVGLF_HRSVL
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
216-243
444-471
488-515

PRECURSOR
(SUBGROUP A/STRAIN LONG)

PVGLF_HRSVR
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
213-243
442-471
488-518

PRECURSOR
(STRAIN RSS-2)

PVGLF_MEASE
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAINS EDMONSTON
228-262

PRECURSOR
AND HALLE)

PVGLF_MEASI
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN IP-3-CA)
231-265

PRECURSOR

PVGLF_MEASY
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN YAMAGATA-1)
228-262

PRECURSOR

PVGLF_MUMP1
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL-1)
20-54
447-486

PRECURSOR

PVGLF_MUMPM
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
20-54
447-486

PRECURSOR

PVGLF_MUMPR
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN RW)
20-54
447-486

PRECURSOR

PVGLF_MUMPS
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL)
151-178
426-511

PRECURSOR

PVGLF_NDVL
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
426-512

PRECURSOR
AUSTRALIA-VICTORIA/32)

PVGLF_NDVB
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
426-512

PRECURSOR
BEAUDETTE C/45)

PVGLF_NDVH3
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN HER/33)
151-178
426-512

PRECURSOR

PVGLF_NDVH4
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
426-512

PRECURSOR
B1-HITCHNER/47)

PVGLF_NDVI
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45)
151-178
426-512

PRECURSOR

PVGLF_NDVA
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN LAS/46)
151-178
192-219
426-512

PRECURSOR

PVGLF_NDVM
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
437-512

PRECURSOR
MIYADERA/51)

PVGLF_NDVQ
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
433-512

PRECURSOR
QUEENSLAND/66)

PVGLF_NDVT
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS)
151-178
426-512

PRECURSOR

PVGLF_NDVTG
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
426-512

PRECURSOR
TEXAS G.B./48)

PVGLF_NDVU
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67)
151-178
426-512

PRECURSOR

PVGLF_PHODV
FUSION GLYCOPROTEIN
PHOCINE DISTEMPER VIRUS
36-63
221-262
309-336

PRECURSOR

PVGLF_PI1HC
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
147-174
210-266

PRECURSOR

PVGLF_PI2H
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528

PRECURSOR

PVGLF_PI2HG
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528

PRECURSOR
(STRAIN GREER)

PVGLF_PI2HT
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528

PRECURSOR
(STRAIN TOSHIBA)

PVGLF_PI3B
FUSION GLYCOPROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
115-182
207-241
459-497

PRECURSOR

PVGLF_PI3H4
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
115-182
207-241
459-497

PRECURSOR
(STRAIN N1H 47885)

PVGLF_RINDK
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN KABETE O)
224-265
458-485

PRECURSOR

PVGLF_RINDL
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN L)
224-265
458-506

PRECURSOR

PVGLF_SEND5
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
122-149
211-245
480-507

PRECURSOR

PVGLF_SENDF
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN FUSHIMI)
122-149
211-245
480-507

PRECURSOR

PVGLF_SENDH
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HARRIS)
122-149
211-245
480-507

PRECURSOR

PVGLF_SENDJ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HVJ)
122-149
211-245
480-507

PRECURSOR

PVGLF_SENDZ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN Z)
122-149
211-245
480-507

PRECURSOR

PVGLF_SV41
FUSION GLYCOPROTEIN
SIMIAN VIRUS 41
144-185
241-269
459-496

PRECURSOR

PVGLF_SV5
FUSION GLYCOPROTEIN
SIMIAN VIRUS 5 (STRAIN W3)
137-171
417-444

PRECURSOR

PVGLF_TRTV
FUSION GLYCOPROTEIN
TURKEY RHINOTRACHEITIS VIRUS
124-161
193-200
457-484

PRECURSOR

PVGLG_BEFV
SPIKE GLYCOPROTEIN
BOVINE EPHEMERAL FEVER VIRUS
523-557

PRECURSOR

PVGLG_BRSVC
MAJOR SURFACE
BOVINE RESPIRATORY SYNCYTIAL VIRUS
92-123

GLYCOPROTEIN G
(STRAIN COPENHAGEN)

PVGLG_HRSV1
MAJOR SURFACE
HUMAN RESPIRATORY SYNCYTIAL VIRUS
63-93

GLYCOPROTEIN G
(SUBGROUP B/STRAIN 18537)

PVGLG_HRSV4
MAJOR SURFACE
HUMAN RESPIRATORY SYNCYTIAL VIRUS
66-107

GLYCOPROTEIN G
(STRAIN RSB5857)

PVGLG_HRSV5
MAJOR SURFACE
HUMAN RESPIRATORY SYNCYTIAL VIRUS
243-273

GLYCOPROTEIN G
(STRAIN RSB6190)

PVGLG_HRSV8
MAJOR SURFACE
HUMAN RESPIRATORY SYNCYTIAL VIRUS
66-93

GLYCOPROTEIN G
(SUBGROUP B/STRAIN 8/60)

PVGLG_HSVE4
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 4
271-298

PVGLG_HSVEB
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
383-410

PVGLG_RABVT
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN STREET)
489-519

PRECURSOR

PVGLG_VSVIG
SPIKE GLYCOPROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE
472-499

PRECURSOR
INDIANA/STRAIN GLASGOW)

PVGLH_EBV
GLYCOPROTEIN GP85
EPSTEIN-BARR VIRUS (STRAIN B95-8)
549-576
619-648

PRECURSOR

PVGLH_HCMVA
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
107-136
270-297

PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
106-135

PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
62-89
360-403

PVGLH_HSVSA
GLYCOPROTEIN H PRECURSOR
HERPESVIRUS SAIMIRI (STRAINN 11)
388-415

PVGLI_HCMVA
IE GLYCOPROTEIN PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
47-111

PVGLM_BUNGE
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
512-546
914-941
1128-

1255

PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
913-950

PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
340-374
504-535
682-709

PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
DUGBE VIRUS
945-972

PVGLM_HANTB
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1)
73-100
693-720

PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
75-102

PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
75-102

PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN 76-118)
75-102

PVGLM_INSV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS
628-655
1069-

1101

PVGLM_PHV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS
69-96

PVGLM_PUUMH
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN HALLNAS B1)
72-110

PVGLM_PUUMS
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN SOTKAMO)
72-110

PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
513-540
693-720

PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R22)
73-100
513-540
694-721

PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11)
73-100
513-540
694-721

PVGLN_BEFV
NONSTRUCT GLYCOPRO GNS
BOVINE EPHEMERAL FEVER VIRUS
523-564

PRECURSOR

PVGLP_BEV
PEPLOMER GLYCOPROTEIN
BERNE VIRUS
48-82
1145-
1184-
1505-

PRECURSOR

1179
1211
1532

PVGLY_JUNIN
GLYCOPROTEIN POLYPROTEIN
JUNIN ARENAVIRUS
14-41

PRECURSO

PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN
LASSA VIRUS (STRAIN GA391)
86-113

PRECURSO

PVGLY_MOPEI
GLYCOPROTEIN POLYPROTEIN
MOPEIA VIRUS
86-113
316-346

PRECURSO

PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN
PICHINDE ARENAVIRUS
334-375

PRECURSO

PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS
109-136
315-350

PRECURSO

PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS (STRAIN V5)
303-338

PRECURSO

PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS (STRAIN V7)
302-337

PRECURSO

PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS (STRAIN TRVL 11598)
303-338

PRECURSO

PVGNM_CPSMV
GENOME POLYPROTEIN M
COWPEA SEVERE MOSAIC VIRUS (STRAIN DG)
192-221

PVGP8_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
104-149

ANTIGEN GP85

PVGP_EBOV
STRUCTURAL GLYCOPROTEIN
EBOLA VIRUS
280-314

PRECURSO

PVGP_MABVM
STRUCTURAL GLYCOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
559-589
619-646

PRECURSO

PVGP_MABVP
STRUCTURAL GLYCOPROTEIN
MARBURG VIRUS (STRAIN POPP)
559-589
619-646

PRECORSO

PVH05_VACCC
PROTEIN H5
VACCINIA VIRUS (STRAIN COPENHAGEN)
132-166

PVH05_VACCV
PROTEIN H5
VACCINIA VIRUS (STRAIN WR)
132-166

PVH05_VARV
PROTEIN H5
VARIOLA VIRUS
64-91
150-184

PVHEL_LSV
PROBABLE HELICASE
LILY SYMPTOMLESS VIRUS
130-160

PVHRP_VACCC
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
241-275

PVHRP_VACCV
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
241-275

PV101_VACCC
PROTEIN I1
VACCINIA VIRUS (STRAIN COPENHAGEN)
90-117
153-180

V101_VARV
PROTEIN I1
VARIOLA VIRUS
90-117
153-180

V103_VACCC
PROTEIN I3
VACCINIA VIRUS (STRAIN COPENHAGEN)
160-190

V103_VACCV
PROTEIN I3
VACCINIA VIRUS (STRAIN WR)
160-190

V103_VARV
PROTEIN I3
VARIOLA VIRUS
160-190

V108_VACCC
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN COPENHAGEN)
290-317
548-575
593-632

V108_VACCV
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN WR)
290-317
548-575
593-632

V108_VARV
PUTATIVE RNA HELICASE 18
VARIOLA VIRUS)
290-317
548-575
593-632

VIE1_MCMVS
IMMEDIATE-EARLY PROTEIN 1
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
261-288

VIE2_NPVOP
IMMEDIATE-EARLY

ORGYIA PSEUDOTSUGATA MULTICAPSID
355-385

PROTEIN IE-2
POLYHEDROSIS VIRUS

VIEN_NPVAC
IE-REG PROTEIN IE-N

AUTOGRAPHA CALIFORNICA NUCLEAR
217-325
343-400

POLYHEDROSIS VIRUS

VIF_HV1RH
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
62-89

(RF/HAT ISOLATE)

VIF_SIVAI
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
2-36

(ISOLATE AGM/CLONE GRI-1)

VIMP_HSVEB
PROB INTEGRAL MEMBRANE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
147-174

PROTEIN

VIMP_HSVSA
INTEGRAL MEMBRANE
HERPESVIRUS SAIMIRI (STRAIN 11)
80-107

PROTEIN

VINT_SSV1
PROBABLE INTEGRASE
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
73-100

VJ01_VACCC
PROTEIN J1
VACCINIA VIRUS (STRAIN COPENHAGEN)
22-56

VJ01_VACCV
PROTEIN J1
VACCINIA VIRUS (STRAIN WR)
22-56

VJ01_VARV
PROTEIN J1
VARIOLA VIRUS
22-56

VL1_CRPVK
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS
331-383

(STRAIN KANSAS)

VL1_FPVL
PROBABLE L1 PROTEIN
AVIAN PAPILLOMAVIRUS FPV-L
38-65

VL1_HPV08
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
354-392

VL1_HPV18
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
183-210

VL1_HPV33
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
19-46

VL1_HPV41
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
345-372

VL1_HPV51
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
19-46

VL1_HPV58
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
45-72

VL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
407-445

VL2_HPV41
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
415-442

VL3_REOVD
MINOR CORE PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
330-357

LAMBDA 3

VL3_REOVL
MINOR CORE PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
330-357

LAMBDA 3

VL96_IRV1
L96 PROTEIN
TIPULA IRIDESCENT VIRUS
146-180
625-652

PVM1_REOVL
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
290-317

PROTEIN MU

PVM21_REOVD
MAJOR VIRION STRUC PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
625-662

MU-1/MU-

PVM22_REOVD
MAJOR VIRION STRUC PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
624-661

MU-1/MU-

PVM2_REOVJ
MAJOR VIRION STRUC PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
624-661

MU-1/MU-

PVM3_REOVD
MAJOR NONSTRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
159-186
343-370
456-483
631-690

PROTEIN MU-N

PVMA2_BRSVA
MATRIX GLYCOPROTEIN M2
BOVINE RESPIRATORY SYNCYTIAL VIRUS
124-152

(STRAIN A51908)

PVMA2_HRSVA
MATRIX GLYCOPROTEIN M2
HUMAN RESPIRATORY SYNCYTIAL VIRUS
124-151

(STRAIN A2)

PVMAT_BRSVA
MATRIX PROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS
219-246

(STRAIN A51908)

PVMAT_HRSVA
MATRIX PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
219-246

(STRAIN A2)

PVMAT_INCJJ
MATRIX (M) PROTEIN
INFLUENZA C VIRUS (STRAIN C/JJ/50)
151-185

PVMAT_NDVA
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
247-274

AUSTRALIA-VICTORIA/32)

PVMAT_PI2HT
MATRIX PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
96-123

(STRAIN TOSHIBA)

PVMAT_PI3B
MATRIX PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
201-231

PVMAT_PI3H4
MATRIX PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
201-231

(STRAIN NIH 47885)

PVMAT_SV41
MATRIX PROTEIN
SIMIAN VIRUS 41
323-353

PVME1_CVBM
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
175-209

PVME1_CVTKE
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS
175-209

PVME1_IBV6
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-48
184-218

(STRAIN 6/82)

PVME1_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-48
184-218

(STRAIN BEAUDETTE)

PVME1_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-48
184-218

(STRAIN BEAUDETTE M42)

PVME1_IBVK
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
184-218

(STRAIN KB8523)

PVMP_CAMVC
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
220-254
273-324

PVMP_CAMVD
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
29-56
220-254
273-324

PVMP_CAMVE
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
227-254
273-324

PVMP_CAMVN
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
220-254
273-324

PVMP_CAMVS
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
220-254
273-324

(STRAIN STRASBOURG)

PVMP_CAMVW
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
220-254
273-324

PVMP_CERV
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS
26-53
100-127

PVMP_SOCMV
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
4-31
78-118

PVMSA_HPBHE
MAJOR SURFACE ANTIGEN
HERON HEPATITIS B VIRUS
294-328

PRECURSOR

PVMT1_DHVI1
MATRIX PROTEIN 1
DHORI VIRUS (STRAIN INDIAN/1313/61)
38-65
237-264

PVMT8_MYXVL
M-T8 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
163-190

PVMT9_MYXVL
MT-9 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
465-492

PVN34_ROTPC
NONSTRUCTURAL PROTEIN
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
83-113

NS34

PVNCN_PAVBO
PROBABLE NONCAPSID
BOVINE PARVOVIRUS
149-176

PROTEIN NP1

PVNCS_ADVG
NONCAPSID PROTEIN NS-1
ALEUTIAN MINK DISEASE PARVOVIRUS (STRAIN G)
86-148

PVNCS_AEDEV
NONCAPSID PROTEIN NS-1
AEDES DENSONUCLEOSIS VIRUS
14-41
279-339
487-517
585-612
780-817
821-848

(STRAIN GK V 002 002)

PVNCS_MUMIM
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS (STRAIN MVMI)
35-62
262-289

PVNCS_MUMIV
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS
35-62
262-289

PVNCS_PAVHB
NONCAPSID PROTEIN NS-1
HUMAN PARVOVIRUS B19
236-270

PVNCS_PAVHH
NONCAPSID PROTEIN NS-1
HAMSTER PARVOVIRUS H1
35-62

PVNCS_PAVPN
NONCAPSID PROTEIN NS-1
PORCINE PARVOVIRUS (STRAIN NADL-2)
24-55
169-196
316-346

PVNS1_EHDV2
NONSTRUCTURAL PROTEIN NS1
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
411-438

(SEROTYPE 2/STRAIN ALBERTA)

PVNS1_IAALA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77)
171-198

PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
171-198

PVNS1_IACHI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
171-198

PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/CHICKEN/GERMANY/N/49)

PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
168-195

A/CHICKEN/JAPAN/24)

PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/DUCK/ALBERTA/60/76)

PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/FORT MONMOUTH/1/47)

PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/FORT/WARREN/1/50)

PVNS1_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/LENINGRAD/134/57)

PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/MALLARD/ALBERTA/88/76)

PVNS1_IAPI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/PINTAIL/ALBERTA/121/79)

PVNS1_IAPI3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/PINTAIL/ALBERTA/358/79)

PVNS1_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/TURKEY/BETHLEHEM-GLILIT/1492-B/82)

PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/TURKEY/CANADA/63)

PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198

A/TERN/TURKMENIA/18/72)

PVNS1_IAUDO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
171-198

PVNS1_IAUSS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
171-198

PVNS1_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN B/PA/79)
171-198

PVNS2_IATKR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN
87-114

A/TURKEY/OREGON/71)

PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/LEE/40)
51-78

PVNS2_INBYA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73)
51-78

PVNS2_INCJJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA C VIRUS (STRAIN C/JJ/50)
71-98

PVNS3_CVPFS
NONSTRUCTURAL PROTEIN 3-1
PORCINE TRANSMISSIBLE GASTROENTERITIS
9-36

CORONAVIRUS (STRAIN FS772

PVNS4_CVH22
NONSTRUCTURAL PROTEIN 4
HUMAN CORONAVIRUS (STRAIN 229E)
9-36

PVNS4_RSV
NONSTRUCTURAL PROTEIN NS4
RICE STRIPE VIRUS
6-40

PVNS7_CVCAE
NONSTRUCTURAL PROTEIN 7
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
11-45

PVNS7_CVFE3
NONSTRUCTURAL PROTEIN 7
FELINE ENTERIC CORONA VIRUS
8-42

(STRAIN 79-1683)

PVNS7_CVPFS
NONSTRUCTURAL PROTEIN 7
PORCINE TRANSMISSIBLE GASTROENTERITIS
34-61

CORONAVIRUS (STRAIN FS772

PVNS7_CVPPU
NONSTRUCTURAL PROTEIN 7
PORCINE TRANSMISSIBLE GASTROENTERITIS
34-61

CORONAVIRUS (STRAIN PURD

PVNS7_CVPRM
NONSTRUCTURAL PROTEIN 7
PORCINE RESPIRATORY CORONAVIRUS
34-61

PVNS7_FIPV
NONSTRUCTURAL PROTEIN 7
FELINE INFECTIOUS PERITONITS VIRUS
8-42

(STRAIN 79-1146)

PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
41-75

(STRAIN CI-14/83)

PVNSC_PI3H4
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 3 VIRUS
58-99

(STRAIN NIH 47885)

PVNSM_INSV
NONSTRUCTURAL PROTEIN
IMPATIENS NECROTIC SPOT VIRUS
262-296

NS-M

PVNST_BUNLC
NONSTRUCTURAL PROTEIN
BUNYAVIRUS LA CROSSE
57-84

NS-S

PVNST_TOSV
NONSTRUCTURAL PROTEIN
TOSCANA VIRUS
146-180

NS-S

PVNUC_EBOV
NUCLEOPROTEIN
EBOLA VIRUS
311-369

PVNUC_IAANA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/ANAS ACUTA/PRIMORJE/695/76)

PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/ANN ARBOR/6/60)

PVNUC_IABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78)
378-405

PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/BUDGERIGAR/HOKKAIDO/1/77)

PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/CALIFORNIA/10/78)

PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/CHICKEN/GERMANY/N/49)

PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/CHICKEN/PENNSYLVANIA/1/83)

PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/AUSTRALIA/749/80)

PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/BEIJING/1/78)

PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/CZECHOSLOVAKIA/56)

PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/ENGLAND/1/)

PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/ENGLAND/1/62)

PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/HONG KONG/7/75)

PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/MEMPHIS/928/74)

PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/MANITOBA/1/53)

PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/NEW ZEALAND/31/76)

PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/DUCK/UKRAINE/2/60)

PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/ENGLAND/19/55)

PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/FORT MONMOUTH/1/47)

PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/FORT WARREN/1/50)

PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/FOWL PLAGUE VIRUS/DOBSON/‘DUTCH’/27)

PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/FOWL PLAGUE VIRUS/ROSTOCK/34)

PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/GREY TEAL/AUSTRALIA/2/79)

PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/GULL/MARYLAND/5/77)

PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/GULL/MARYLAND/704/77)

PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/GULL/MARYLAND/1824/78)

PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/GULL/MARYLAND/1815/79)

PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/GULL/ASTRAKHAN/227/84)

PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/GULL/MASSACHUSETTS/26/80)

PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/GULL/MINNESOTA/945/80)

PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HICKOX/40)
378-405

PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/EQUINE/JILLIN/1/89)

PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/EQUINE/LONDON/1416/73)

PVNUC_IAHMI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/EQUINE/MIAMI/1/63)

PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/68)
378-405

PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83)
378-405

PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/EQUINE/PRAGUE/1/56)

PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/EQUINE/TENNESSEE/5/86)

PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
378-405

PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
378-405

PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/MALLARD/ASTRAKHAN/244/82)

PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/MALLARD/NEW YORK/6750/78)

PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/MINK/SWEDEN/84)

PVNUC_IANEJ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/NEW JERSEY/8/76)

PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
378-405

PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/OHIO/4/83)
378-405

PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/PARROT/ULSTER/73)

PVNUC_IAUPE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/PUERTO RICO/8/34)

PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/RUDDY TURNSTONE/NEW JERSEY/47/85)

PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SEAL/MASSACHUSETTS/1/80)

PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SHEARWATER/AUSTRALIA/72)

PVNUC_IAS1N
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SINGAPORE/1/57)

PVNUC_IATE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/TEAL/ICELAND/29/80)

PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/TURKEY/MINNESOTA/1661/81)

PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/TURKEY/ONTARIO/7732/66)

PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/TERN/SOUTH AFRICA/61)

PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/TERN/TURKMENIA/18/72)

PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77)
378-405

PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
378-405

PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
378-405

PVNUC_IAVI6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/VICTORIA/5/68)
378-405

PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/WHALE/MAINE/328/84)

PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/WHALE/PACIFIC OCEAN/19/76)

PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/WILSON-SMITH/33)

PVNUC_IAWIS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/WISCONSIN/3523/88)

PVNUC_IAZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/29/37)
378-405

PVNUC_IAZ41
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/41/49)
378-405

PVNUC_IAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/CAMBRIDGE/1/35)

PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/DANDONG/9/83)

PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/GERMANY/2/81)

PVNUC_IAZH1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/HONG KONG/6/76)

PVNUC_IAZH3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/HONG KONG/126/82)

PVNUC_IAZH4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/HONG KONG/127/82)

PVNUC_IAZI1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/IOWA/15/30)

PVNUC_IAZI2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/IOWA/1976/31)

PVNUC_IAZI3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46)
378-405

PVNUC_IAZJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/ITALY/437/76)

PVNUC_JAZJ2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/ITALY/2/79)

PVNUC_IAZJ3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/ITALY/141/81)

PVNUC_JAZJ4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/ITALY/839/89)

PVNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/JAMESBURG/42)

PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54)
378-405

PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/NETHERLANDS/12/85)

PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/OHIO/23/35)

PVNUC_IAZON
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/ONTARIO/2/81)

PVNUC_IAZTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/TENNESSEE/24/77)

PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/WISCONSIN/1/57)

PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405

A/SWINE/WISCONSIN/1/61)

PVNUC_INCCA
NUCLEOPROTEIN
INFLUENZA C VIRUS (STRAIN
99-126
416-443
451-478

C/CALIFORNIA/78)

PVNUC_MABVM
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
366-407

PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
366-407

PVO01_VACCC
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-37
109-138
581-608

PVO01_VARV
PROTEIN O1
VARIOLA VIRUS
7-37
109-138
581-608

PVOR1_FXMV
152 KD PROTEIN
FOXTAIL MOSAIC VIRUS
1023-

1050

PVOR1_NMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS
996-1023
1527-

1561

PVOR1_PMV
176 KD PROTEIN
PAPAYA MOSAIC POTEXVIRUS
948-978
1481-

1532

PVOR1_PVMR
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN)
597-627

PVOR1_PVX
165 KD PROTEIN
POTATO VIRUS X
698-725
1017-

1044

PVOR1_PVXX3
165 KD PROTEIN
POTATO VIRUS X (STRAIN X3)
698-725
1017-

1044

PVOR1_SMYEA
150 KD PROTEIN
STRAWBERRY MILD YELLOW EDGE-ASSOCIATED
312-342
691-721

VIRUS

PVP10_NPVAC
P10 PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
7-41

POLYHEDROSIS VIRUS

PVP10_NPVOP
P10 PROTEIN

ORGYIA PSEUDOTSUGATA MULTICAPSID
7-48

POLYHEDROSIS VIRUS

PVP10_NPVSE
P10 PROTEIN

SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS
6-33
37-64

VIRUS (STRAIN US)

PVP10_RGDV
NONSTRUCTURAL PROTEIN
RICE GALL DWARF VIRUS
205-242

PNS10

PVP10_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
151-181
227-254

PNS10

PVP11_RDV
NONSTRUCTURAL PROTEIN
RICE DWARF VIRUS
53-80

PNS11

PVP12_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
81-108

PNS12

PVP18_WTVNJ
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS (STRAIN NJ)
81-108

PNS12

PVP19_AMCV
CORE PROTEIN P19
ARTICHOKE MOTTLED CRINKLE VIRUS
73-100

PVP19_TBSVC
CORE PROTEIN P19
TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY)
73-100

PVP23_HSVSA
PROBABLE CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
2-29

VP23

PVP26_HSVEB
CAPSID PROTEIN VP26
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
36-63

PVP26_HSVSA
CAPSID PROTEIN VP26
HERPESVIRUS SAIMIRI (STRAIN 11)
48-75

PVP2_AHSV4
OUTER CAPSID PRPOTEIN VP2
AFRICAN HORSE SICKNESS VIRUS
277-304
410-437
632-662
907-934

(SEROTYPE 4/STRAIN VACCINE)

PVP2_BTV13
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
815-846

PVP2_BTV1A
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE
898-925

1/ISOLATE AUSTRALIA)

PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE
119-146

1/ISOLATE SOUTH AFRICA)

PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
72-103
415-453

(SEROTYPE 1)

PVP2_ROTBR
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
39-94
523-553

PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
39-94
524-554

PVP2_ROTHW
RNA-BINDING PROTEIN VP2
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
70-101
533-567

PVP2_ROTPC
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
52-99
128-156
518-545
705-746

PVP2_ROTS1
RNA-BINDING PROTEIN VP2
SIMIAN 11 ROTOVIRUS (STRAIN SA11)
36-96

PVP30_ASFE7
PHOSPHOPROTEIN P30
AFRICAN SWINE FEVER VIRUS (STRAIN E-75)
39-75

PVP32_ASFB7
PHOSPHOPROTEIN P32
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
39-75

PVP35_EBOV
POLYMERASE COMPLEX
EBOLA VIRUS
83-119

PROTEIN VP35

PVP35_MABVM
POLYMERASE COMPLEX
MARBURG VIRUS (STRAIN MUSOKE)
80-107
231-258

PROTEIN VP35

PVP35_MABVP
POLYMERASE COMPLEX
MARBURG VIRUS (STRAIN POPP)
80-107
231-258

PROTEIN VP35

PVP35_NPVAC
EARLY 35 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
270-297

POLYHEDROSIS VIRUS

PVP35_NPVBM
EARLY 35 KD PROTEIN
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
68-102

PVP35_VACCV
IMMUNODOM ENV PRO P35
VACCINIA VIRUS (STRAIN WR)
178-205

PVP39_NPVAC
MAJOR CAPSID PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
134-161
264-291

POLYHEDROSIS VIRUS

PVP39_NPVOP
MAJOR CAPSID PROTEIN

ORGYIA PSEUDOTSUGATA MULTICAPSID
263-290

POLYHEDROSIS VIRUS

PVP3_AHSV4
VP3 CORE PROTEIN
AFRICAN HORSE SICKNESS VIRUS
132-159

(SEROTYPE 4/STRAIN VACCINE)

PVP3_BTV10
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
214-252

PVP3_BTV17
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
214-252

PVP3_BTV1A
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
214-252

AUSTRALIA)

PVP3_EHDV1
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
209-243
798-832

(SEROTYPE 1)

PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
798-832

(SEROTYPE 2/STRAIN AUSTRAL

PVP3_GFLV
P3 PROTEIN
GRAPEVINE FANLEAF VIRUS
99-133

PVP3_ROTPC
INNER CORE PROTEIN VP3
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
39-66
329-384

PVP3_ROTS1
INNER CORE PROTEIN VP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
26-67
350-377
451-497
619-692

PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN B95-8)
440-470

PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI (STRAIN 11)
205-232
344-372

PVP40_ILTVT
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS
515-549

(STRAIN THORNE V882)

PVP40_VZVD
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
174-208
495-522

PVP41_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
8-35
589-619

PVP42_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
8-35
584-622

PVP4A_VACCC
MAJOR CORE PROTEIN P4A
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-75

PRECURSOR

PVP4A_VACCV
MAJOR CORE PROTEIN P4A
VACCINIA VIRUS (STRAIN WR)
48-75

PRECURSOR

PVP4A_VARV
MAJOR CORE PROTEIN P4A
VARIOLA VIRUS
48-75

PRECURSOR

PVP4B_FOWPV
MAJOR CORE PROTEIN P4B
FOWLPOX VIRUS
80-110

PRECURSOR

PVP4B_VACCC
MAJOR CORE PROTEIN P4B
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-37

PRECURSOR

PVP4B_VACCV
MAJOR CORE PROTEIN P4B
VACCINIA VIRUS (STRAIN WR)
7-37

PRECURSOR

PVP4B_VARV
MAJOR CORE PROTEIN P4B
VARIOLA VIRUS
7-37

PRECURSOR

PVP4_BTV10
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
34-61
576-603

PVP4_BTV11
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
34-61
576-603

PVP4_BTV13
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
34-61
576-603

PVP4_BTV2A
OUTER CAPSID PROTEIN VP4
NEBRASKA CALF DIARRHEA VIRUS
552-622

(STRAIN NCDV-LINCOLN)

PVP4_NCDV
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641)
595-629

PVP4_ROTB4
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN C486)
8-35
584-622

PVP4_ROTBC
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN UK)
595-629

PVP4_ROTBU
OUTER CAPSID PROTEIN VP4
EQUINE ROTAVIRUS (STRAIN H-2)
112-146
235-269
552-629

PVP4_ROTEH
OUTER CAPSID PROTEIN VP4
ROTAVIRUS (GROUP B/STRAIN IDIR)
5-32

PVP4_ROTG1
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076)
8-35
572-628

PVP4_ROTH1
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5)
8-35
279-306
565-621

PVP4_ROTH5
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M)
8-35
112-139
584-629

PVP4_ROTH6
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M)
8-35
279-306
565-621

PVP4_ROTHD
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
8-35
279-306
565-621

PVP4_ROTHJ
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN K8)
8-35
111-138

PVP4_ROTHK
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN KU)
8-35
77-104
279-306
577-621

PVP4_ROTHL
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN L26)
8-35
279-306
565-621

PVP4_ROTHM
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
8-35
572-610

PVP4_ROTHN
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN MCN13)
8-35
573-628

PVP4_ROTHP
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
8-35
577-621

PVP4_ROTHR
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV)
8-38
105-135
235-262

PVP4_ROTHT
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN
8-35
572-627

ST. THOMAS 3)

PVP4_ROTHV
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70)
8-35
279-306
590-617

PVP4_ROTHW
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
8-35
577-621

PVP4_ROTP5
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
112-146
584-625

PVP4_ROTPC
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
5-33
115-161
293-320

PVP4_ROTPG
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
8-35
572-628

PVP4_ROTPY
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN YM)
8-35
112-146
584-625

PVP4_ROTRH
OUTER CAPSID PROTEIN VP4
RHESUS ROTARVIRUS
8-38
584-622

PVP4_ROTSF
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11-FEM)
8-35
589-619

PVP4_ROTSS
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11-SEM)
8-35
130-157
584-622

PVP4_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
28-62

PNS4

PVP5_AHSV4
OUTER CAPSID PROTEIN VP5
AFRICAN HORSE SICKNESS VIRUS
113-183
191-218

(SEROTYPE 4/STRAIN VACCINE)

PVP5_BTV10
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
53-80
99-126

PVP5_BTV11
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
53-80
92-126

PVP5_BTV13
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
53-80

PVP5_BTV1A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
53-80
89-126

AUSTRALIA)

PVP5_BTV1S
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
53-80
92-126
148-182

SOUTH AFRICA)

PVP5_BTV2A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
53-80
89-126

PVP5_EHDV1
OUTER CAPSID PROTEIN VP5
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
31-80
191-218
399-426

(SEROTYPE 1)

PVP5_WTV
OUTER COAT PROTEIN P5
WOUND TUMOR VIRUS
648-675

PVP61_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
161-193

PVP61_MRDV
PROB NONSTRUCT 41.0 KD PRO
MAIZE ROUGH DWARF VIRUS
153-202

PVP61_NPVAC
61 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
36-63

POLYHEDROSIS VIRUS

PVP62_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
157-189

PVP64_NPVOP
MAJOR ENV GLYCOPRO

ORGYIA PSEUDOTSUGATA MULTICAPSID
45-72

PRECURSOR
POLYHEDROSIS VIRUS

PVP67_NPVAC
MAJOR ENV GLYCOPRO

AUTOGRAPHA CALIFORNICA NUCLEAR
44-81

PRECURSOR
POLYHEDROSIS VIRUS

PVP6_BTV11
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
157-189

PVP6_BTV13
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
157-189

PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
157-189

PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
161-193

SOUTH AFRICA)

PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
133-172

PVP6_RDV
STRUCTURAL PROTEIN P6
RICE DWARF VIRUS
10-37
354-381

PVP74_NPVAC
P74 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
413-440

POLYHEDROSIS VIRUS

PVP75_HSVSA
PROBABLE MEMBRANE
HERPESVIRUS SAIMIRI (STRAIN 11)
181-208
929-977

ANTIGEN 75

PVP79_NPVAC
79 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
44-78
370-397

POLYHEDROSIS VIRUS

PVP7_EHDV1
VP7 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
16-43

(SEROTYPE 1)

PVP7_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
458-485

PNS7

PVP80_NPVAC
CAPSID PROTEIN P80

AUTOGRAPHA CALIFORNICA NUCLEAR
101-142
240-298

POLYHEDROSIS VIRUS

PVP87_NPVOP
CAPSID PROTEIN P87

ORGYIA PSEUDOTSUGATA MULTICAPSID
132-159

POLYHEDROSIS VIRUS

PVP8_BTV10
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
105-132

PVP8_FOWPV
STRUCTURAL PROTEIN VP8
FOWLPOX VIRUS
211-238

PRECURSOR

PVP8_WTV
OUTER CAPSID PROTEIN P8
WOUND TUMOR VIRUS
29-56
112-143

PVP9_RDV
NONSTRUCTURAL PROTEIN
RICE DWARF VIRUS
197-224

PNS9

PVP9_WTV
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS
22-49

PVP9_WTNVJ
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS (STRAIN NJ)
22-49

PVPHE_NPVAC
29 KD POLYHEDRAL ENVELOPE

AUTOGRAPHA CALIFORNICA NUCLEAR
196-223

PROTEIN
POLYHEDROSIS VIRUS

PVPHE_NPVOP
32 KD POLYHEDRAL ENVELOPE

ORGYIA PSEUDOTSUGATA MULTICAPSID
127-186
238-265

PROTEIN
POLYHEDROSIS VIRUS

PVPRT_ADEM1
ENDOPROTEASE
MOUSE ADENOVIRUS TYPE 1
167-194

PVPU_HV1A2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-31

(ARV2/SF2 ISOLATE)

PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-48

(BH10 AND HXB3 ISOLATES)

PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
21-48

(BH8 ISOALTE)

PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
22-49

(BRAIN ISOLATE)

PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-48

(BRU ISOLATE)

PVPU_HV1C4
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-30

(CDC-451 ISOLATE)

PVPU_HV1EL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
6-33

(ELI ISOLATE)

PVPU_HV1H2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-48

(HXB2 ISOLATE)

PVPU_HV1J3
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
2-29

(JH3 ISOLATE)

PVPU_HV1JR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
22-49

(JRCSF ISOLATE)

PVPU_HV1MA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-32

(MAL ISOLATE)

PVPU_HV1ND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
6-33

(NDK ISOLATE)

PVPU_HV1PV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-48

(PV22 ISOLATE)

PVPU_HV1S1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
22-49

(SF162 ISOLATE)

PVPU_SIVCZ
VPU PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
51-78

PVPX_LDV
VPX PROTEIN
LACTATE DEHYDROGENASE-ELEVATING VIRUS
64-94

PVRNA_BSMV
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS
1051-

1078

PVS06_ROTBS
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
6-43

PVS06_ROTGA
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
114-144

PVS06_ROTGI
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
28-55

PVS06_ROTHC
VP6 PROTEIN
HUMAN ROTAVIRUS
9-44

PVS06_ROTPC
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
9-44

PVS07_ROTBJ
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KN-4)
2-29

PVS07_ROTBU
NONSTRUCTURAL PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
91-146
199-236

NCVP3

PVS07_ROTP5
NONSTRUCTURAL PROTEIN
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
91-146
202-236

NCVP3

PVS07_ROTS1
NONSTRUCTURAL PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
91-146
199-236

NCVP3

PVS08_ROTBU
NONSTRUCTURAL PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
164-201

NS2/VP9

PVS08_ROTS1
NONSTRUCTURAL PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
164-201
217-251

NCVP4

PVS09_ROTB4
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641)
2-29

PVS09_ROTB5
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A5)
2-29

PVS09_ROTBU
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN UK)
2-29

PVS09_ROTGA
GLYCOPROTEIN VP7
ROTAVIRUS (GROUP B/STRAIN ADRV)
210-237

PRECURSOR

PVS09_ROTH4
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN RV-4)
2-29

PVS09_ROTHA
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HU5)
2-29

PVS09_ROTHB
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE G/STRAIN B37)
2-29

PVS09_ROTHD
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
2-29

PVS09_ROTHH
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HN126)
2-29

PVS09_ROTHM
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
2-29

PVS09_ROTHO
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN MO
2-29

AND STRAIN D)

PVS09_ROTHP
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
2-29

PVS09_ROTHS
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2)
2-29

PVS09_ROTHW
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
2-29

PVS09_ROTP2
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN AT/76)
2-29

PVS09_ROTP3
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN CRW-8)
2-29

PVS09_ROTS1
GLYCOPROTEIN VP7
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
2-29

PVS10_ROTBS
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
125-152

PVS10_ROTS1
NONSTRUCTURAL GLYCO-
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
113-140

PROTEIN NCVP5

PVS11_ROTBU
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
13-40
114-145

PVS11_ROTBV
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN VMRI)
13-40
114-145

PVS11_ROTGA
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
31-60

(ADULT DIARRHEA ROTAVIRUS)

PVS11_ROTH5
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5)
13-40
111-145

PVS11_ROTHD
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
13-40
111-145

PVS11_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
111-145

PVS11_ROTRA
MINOR OUTER CAPSID PROTEIN
RABBIT ROTAVIRUS (STRAIN ALABAMA)
118-145

PVS11_ROTS1
MINOR OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
111-146

PVSH_MUMP1
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS
9-46

PVSH_MUMPA
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MATSUYAMA)
12-41

PVSH_MUMPB
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BELFAST)
9-41

PVSH_MUMPE
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN ENDERS)
9-46

PVSH_MUMPJ
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN JERYL-LYNN)
9-46

PVSH_MUMPK
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN KILHAM)
9-46

PVSH_MUMPL
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BRISTOL 1)
9-46

PVSH_MUMPM
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
12-41

PVSH_MUMPR
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN RW)
9-41

PVSH_MUMPU
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN URABE VACCINE AM9)
12-41

PVSI1_REOVD
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 3/STRAIN DEARING)
26-63
71-122
127-168
222-259

PVSI1_REOVJ
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 2/STRAIN D5/JONES)
4-104
130-193

PVSI1_REOVL
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 1/STRAIN LANG)
4-52
75-104
112-160

PVSI2_REOVD
SIGMA 2 PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
350-384

PVSI3_REOVJ
SIGMA 3 PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
289-316

PVSIS_REOVD
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
90-117

PVSIS_REOVL
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
50-77

PVT3A_CAPV1
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
124-158

PVT5_SFVKA
PROTEIN T5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
250-277

PVTER_EBV
PROBABLE DNA PACKAGING
EPSTEIN-BARR VIRUS (STRAIN B95-8)
234-290

PROTEIN

PVTER_HCMVA
PROBABLE DNA PACKAGING
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
417-451

PROTEIN

PVTER_HSV6U
PROBABLE DNA PACKAGING
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
176-203

PROTEIN
UGANDA-1102)

PVTER_HSVI1
PROBABLE DNA PACKAGING
ICTALURID HERPESVIRUS 1
710-737

PROTEIN

PVTER_VZVD
PROBABLE DNA PACKAGING
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
394-321

PROTEIN

PVTP3_TTV1V
VIRAL PROTEIN TPX
THERMOPROTEUS TENAX VIRUS 1 (STRAIN VT3)
169-196

PVTPX_TTV1
VIRAL PROTEIN TPX
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
169-196

PVV_PI4HA
V PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS
4-38

(STRAIN TOSHIBA)

PY101_SSV1
HYPOTHETICAL 10.1 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
25-65

PROTEIN

PY108_SSV1
HYPOTHETICAL 10.8 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
4-61

PROTEIN

PY119_SSV1
HYPOTHETICAL 11.9 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
30-78

PROTEIN

PY11K_TYDVA
HYPOTHETICAL 11.2 KD
TOBACCO YELLOW DWARF VIRUS
53-87

PROTEIN
(STRAIN AUSTRALIA)

PY13K_NPVAC
HYPOTH 13.1 KD IN 39 KD

AUTOGRAPHA CALIFORNICA NUCLEAR
85-112

5′REGION
POLYHEDROSIS VIRUS

PY13K_SSV1
HYPOTHETICAL 13.2 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
59-86

PROTEIN

PY14K_SSV1
HYPOTHETICAL 13.7 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
5-39

PROTEIN

PY16K_NPVAC
HYPOTH IN 39 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
80-107

5′REGION
POLYHEDROSIS VIRUS

PY16K_SSV1
HYPOTHETICAL 15.6 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
77-111

PROTEIN

PY17K_SSV1
HYPOTHETICAL 17.8 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
9-36
119-153

PROTEIN

PY18K_MSVN
HYPOTHETICAL 17.7 KD
MAIZE STREAK VIRUS (NIGERIAN ISOLATE)
34-61

PROTEIN

PY18K_MSVS
HYPOTHETICAL 17.2 KD
MAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE)
34-61

PROTEIN

PY20K_SSV1
HYPOTHETICAL 20.4 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
76-103

PROTEIN

PY28K_SSV1
HYPOTHETICAL 28.5 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
93-164

PROTEIN

PY2_SOCMV
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE VIRUS
118-148

PY31K_SSV1
HYPOTHETICAL 31.5 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
24-97

PROTEIN

PY32K_SSV1
HYPOTHETICAL 31.7 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
233-267

PROTEIN

PY38K_NPVAC
HYPOTHETICAL 37.7 KD

AUTOGRAPHA CALIFORNICA NUCLEAR
133-184

PROTEIN
POLYHEDROSIS VIRUS

PY3_SOCMV
HYPOTHETICAL PROTEIN 3
SOYBEAN CHLOROTIC MOTTLE VIRUS
122-149

PY7_SOCMV
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE VIRUS
56-94

PY85K_SSV1
HYPOTHETICAL 85.7 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
81-121
546-573
658-700

PROTEIN

PY8_SOCMV
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE VIRUS
13-40

PYB01_FOWPM
HYPOTHETICAL BAMHI-ORF1
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
74-108
152-179
184-218

PROTEIN

PYB05_FOWPM
HYPOTHETICAL BAMHI-ORF5
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
62-89

PROTEIN

PYB10_FOWPM
HYPOTHETICAL BAMHI-ORF10
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
162-197
214-241

PROTEIN

PYB12_FOWPM
HYPOTHETICAL BAMHI-ORF12
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
11-38

PROTEIN

PYB13_FOWPM
HYPOTHETICAL BAMHI-ORF13
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
128-167

PROTEIN

PYBL3_FOAMV
BEL-3 PROTEIN
HUMAN SPUMARETROVIRUS
87-116

PYDH1_HSVS7
HYPOTH 24.1 KD IN DHFR
HERPESVIRUS SAIMIRI (STRAIN 484-77)
161-188

3′REGION

PYDH1_HSVSC
HYPOTH 28.7 KD IN DHFR
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
52-82

3′REGION

PYDH4_HSVSC
HYPOTH 9.9 KD IN DHFR
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
53-83

3′REGION

PYF26_FOWP1
HYPOTHETICAL 25.9 KD
FOWLPOX VIRUS (STRAIN FP-1)
8-35

PROTEIN

PYF30_FOWP1
HYPOTHETICAL 30.9 KD
FOWLPOX VIRUS (STRAIN FP-1)
170-204

PROTEIN

PYH22_VACCV
HYPOTH 21.7 KD HINDIII-C PRO
VACCINIA VIRUS (STRAIN WR)
37-64
95-126
144-171

PYHR3_VACCV
HYPOTH HOST RANGE 27.4 KD
VACCINIA VIRUS (STRAIN WR)
31-58
179-206

PRO

PYKR2_EBV
HYPOTHETICAL BKRF2
EPSTEIN-BARR VIRUS (STRAIN B95-8)
90-121

PROTEIN

PYKR4_EBV
HYPOTHETICAL BKRF4
EPSTEIN-BARR VIRUS (STRAIN B95-8)
19-53

PROTEIN

PYL15_ADE41
HYPOTH 12.4 KD IN 33 KD
HUMAN ADENOVIRUS TYPE 41
47-86

REGION

PYLR3_EBV
HYPOTHETICAL BLRF3 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
27-54

PYOR1_COYMV
HYPOTHETICAL 23 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
94-143

PYOR2_COYMV
HYPOTHETICAL 15 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
35-76

PYOR3_WCMVM
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN M)
64-94

PYOR3_WCMVO
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN O)
65-95

PYOR5_ADEG1
HYPOTHETICAL 31.5 KD
AVIAN ADENOVIRUS GALI (STRAIN PHELPS)
92-119

PROTEIN

PYORA_TTV1
HYPOTHETICAL 8.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
23-57

PYORL_TTV1
HYPOTHETICAL 26.8 KD
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
15-42

PROTEIN

PYORQ_TTV1
HYPOTHETICAL 7.3 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
3-31

PROTEIN

PYORW_TTV1
HYPOTHETICAL 12.1 KD
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
4-40

PROTEIN

PYP12_RTBV
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
44-71

PYP12_RTBVP
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
44-71

(ISOLATE PHILIPPINES)

PYP24_RTBV
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
59-101
106-157

PYP24_RTBVP
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
51-101
106-157

(ISOLATE PHILIPPINES)

PYP46_RTBV
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
58-107
197-231

PYP46_RTBVP
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
58-107
197-231

(ISOLATE PHILIPPINES)

PYP63_NPVAC
HYPOTH PRO P6.5 5′REGION

AUTOGRAPHA CALIFORNICA NUCLEAR
44-71

POLYHEDROSIS VIRUS

PYP63_NPVOP
HYPOTH 40.0 KD IN P6.5

ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS
325-352

5′REGION

PYPOH_NPVAC
HYPOTH 23.6 KD IN

AUTOGRAPHA CALIFORNICA NUCLEAR
116-153

POLYHEDRIN 5′REGION
POLYHEDROSIS VIRUS

PYPOL_IPNVN
HYPOTHETICAL 17.0 KD
INFECTIOUS PANCREATIC NECROSIS VIRUS
5-32

PROTEIN
(STRAIN N1)

PYQ3_AMEPV
HYPOTHETICAL PROTEIN IN
AMSACTA MOOREI ENTOMOPOXVIRUS
8-57
59-96
156-183

TK 3′REGION

PYRF1_HSV6G
HYPOTHETICAL PROTEIN RF1
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
208-235

PYRF2_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
223-257
268-299

PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
141-168

PYRF4_HSV6G
HYPOTHETICAL PROTEIN RF4
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
404-441

PYRP2_IRV6
REPETITIVE PROTEIN ORF2
CHILO IRIDESCENT VIRUS
10-45

PYVAG_VACCC
HYPOTHETICAL 9.3 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-34

PYVAH_VACCC
HYPOTHETICAL 14.5 KD
VACCINIA VIRUS (STRAIN COPENHAGEN)
81-112

PROTEIN

PYVDB_VACCC
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
29-77

PYVDB_VACCV
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
46-77

PYVDH_VACCV
HYPOTHETICAL 7.2 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
20-50

PYVGB_VACCC
HYPOTHETICAL 8.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
10-44

PYZL2_EBV
HYPOTHETICAL BZLF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
152-179

TABLE VII

107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY

(PREFERRED VIRAL SEQUENCES)

PCGENE
107 × 178 × 4
All Viruses (no bacteriophages)

FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9

PPOL_MLVAK
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
453-480

PENV_MLVAV
ENV POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
517-544

PPOL_MLVAV
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
805-832

PMYC_AVIM2
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS
232-266
375-402

VIRUS CMII

PMYC_AVIMD
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS
233-267
376-403

VIRUS HBI

PMYC_AVIMC
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS
233-267
376-403

VIRUS MC29

VL1_FPVL
PROBABLE L1 PROTEIN
AVIAN PAPILLOMA VIRUS
38-65

FPV-L

PVGLB_HSVB1
GLYCOPROTEIN I
BOVINE HERPES VIRUS TYPE 1
427-454

PRECURSOR

PRIR2_HSVB3
RIBONUC-DIPHOSPH REDUCT
BOVINE HERPES VIRUS TYPE 1
90-117

SMALL CHA
(STRAIN 34)

PVGLB_HSVB2
GLYCOPROTEIN B-1
BOVINE HERPES VIRUS TYPE 2
447-474

PRECURSOR
(STRAIN BMV)

PENV_BIV06
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
17-44
544-603
631-695

VIRUS (ISOLATE 106)

PENV_BIV27
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
17-44
573-632
660-724

(ISOLATE 127)

PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377

(AMERICAN ISOLATE FLK)

PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377

(AMERICAN ISOLATE VDM)

PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377

(AUSTRALIAN ISOLATE)

PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
311-377

(BELGIUM ISOLATE LB285)

PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377

(BELGIUM ISOLATE LB59)

PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377

(JAPANESE ISOLATE BLV-1)

PHEMA_PI3B
HEMAGGLUTININ-
BOVINE PARAINFLUENZA 3
66-93

NEURAMINIDASE
VIRUS

PRRPP_PI3B
RNA POLYMERASE ALPHA
BOVINE PARAINFLUENZA 3
34-91
255-282
285-314

SUBUNIT
VIRUS

PVGLF_PI3B
FUSION GLYCOPROTEIN
BOVINE PARAINFLUENZA 3
115-182
207-241
459-497

PRECURSOR
VIRUS

PVMAT_PI3B
MATRIX PROTEIN
BOVINE PARAINFLUENZA 3
201-231

VIRUS

PRRPP_BRSVA
RNA POLYMERASE ALPHA
BOVINE RESPIRATORY
99-133

SUBUNIT
SYNCYTIAL VIRUS (STRAIN

A51908)

PVGLF_BRSVA
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
38-65
154-202
216-243
442-469
486-531

PRECURSOR
SYNCYTIAL VIRUS (STRAIN

A51908)

PVMA2_BRSVA
MATRIX GLYCOPROTEIN M2
BOVINE RESPIRATORY
124-152

SYNCYTIAL VIRUS (STRAIN

A51908)

PVMAT_BRSVA
MATRIX PROTEIN
BOVINE RESPIRATORY
219-246

SYNCYTIAL VIRUS (STRAIN

A51908)

PVGLF_BRSVC
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
38-65
154-202
216-243
444-471
488-533

PRECURSOR
SYNCYTIAL VIRUS (STRAIN

COPENHAGEN)

PVGLG_BRSVC
MAJOR SURFACE
BOVINE RESPIRATORY
92-123

GLYCOPROTEIN G
SYNCYTIAL VIRUS (STRAIN

COPENHAGEN)

PVGLF_BRSVR
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
38-65
154-202
216-243
444-471
488-533

PRECURSOR
SYNCYTIAL VIRUS (STRAIN

RB94)

PENV_MLVCB
ENV POLYPROTEIN
CAS-BR-E MURINE LEUKEMIA
510-539

VIRUS

PENV_SIVCZ
ENV POLYPROTEIN
CHIMPANZEE IMMUNO-
160-187
253-289
336-366
526-584
627-654

DEFICIENCY VIRUS

PVPU_SIVCZ
VPU PROTEIN
CHIMPANZEE IMMUNO-
51-78

DEFICIENCY VIRUS

PPOL_SIVCZ
POL POLYPROTEIN
CHIMPANZEE IMMUNO-
242-269
626-685

DEFICIENCY VIRUS (SIV(CPZ))

PVE2_CRPVK
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE)
5-34

PAPILLOMAVIRUS (STRAIN

KANSAS)

VL1_CRPVK
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE)
331-383

PAPILLOMAVIRUS (STRAIN

KANSAS)

PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN
1858-1885
2890-2935
2989-3016

SINGAPORE S275/90)

PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1544-1571
1858-1885
2908-2935
2982-3016
3117-3147

16681)

PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1544-1571
1858-1885
2485-2519
2908-2935
2982-3016
3117-3147

16681-PDK53)

PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1544-1571
1858-1885
2908-2935
3117-3147
3346-3373

JAMAICA)

PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1544-1571
1858-1885
2905-2932
2979-3013
3114-3144
3343-3370

PR159/S1)

PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1134-1161
1448-1475

TONGA 1974)

PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
837-864
1542-1569
1857-1884
2494-2521
2980-3014
3345-3372

PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
2885-2930
2977-3011
3342-3369

PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39

SHANGHAI DUCK ISOLATE S5)

PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39

(STRAIN CHINA)

PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39
304-331

(WHITE SHANGHAI DUCK

ISOLATE S31)

PTEGU_EBV
LARGE TEGUMENT
EPSTEIN-BARR VIRUS (STRAIN
145-172
1215-1242
1344-1371
1876-1903

PROTEIN
B95-8)

PUL06_EBV
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN
115-142
313-340
542-569

B95-8)

PUL11_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
15-42

BBLF1
B95-8)

PUL52_EB
PROB DNA REPLICATION
EPSTEIN-BARR VIRUS (STRAIN
185-212
787-814

PROTEIN BBLF1
B95-8)

PUL87_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
409-436

B(C)RF1
B95-8)

PUL92_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
107-144
168-196

BDLF4
B95-8)

PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
847-874

B95-8)

PVGL2_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
68-102

GLYCOPROTEIN
B95-8)

PVGLB_EBV
GLYCOPROTEIN GP110
EPSTEIN-BARR VIRUS (STRAIN
95-122
631-658

PRECURSOR
B95-8)

PVGLH_EBV
GLYCOPROTEIN GP85
EPSTEIN-BARR VIRUS (STRAIN
549-576
619-648

PRECURSOR
B95-8)

PVGP8_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
104-149

ANTIGEN GP85
B95-8)

PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN
440-470

B95-8)

PVTER_EBV
PROBABLE DNA
EPSTEIN-BARR VIRUS (STRAIN
234-290

PACKAGING PROTEIN
B95-8)

PYKR2_EBV
HYPOTHETICAL BKRF2
EPSTEIN-BARR VIRUS (STRAIN
90-21

PROTEIN
B95-8)

PYKR4_EBV
HYPOTHETICAL BKRF4
EPSTEIN-BARR VIRUS (STRAIN
19-53

PROTEIN
B95-8)

PYLR3_EBV
HYPOTHETICAL BLRF3
EPSTEIN-BARR VIRUS (STRAIN
27-54

PROTEIN
B95-8)

PYZL2_EBV
HYPOTHETICAL BZLF2
EPSTEIN-BARR VIRUS (STRAIN
152-179

PROTEIN
B95-8)

PBZLF_EBV
BZLF1 TRANS-ACTIVATOR
EPSTEIN-BARR VIRUS (STRAIN
193-220

PROTEIN
B95-8)

PDNB1_EBV
MAJOR DNA-BINDING
EPSTEIN-BARR VIRUS (STRAIN
977-1004
1041-1068

PROTEIN
B95-8)

PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN
55-82

B95-8)

PLMP1_EBV
LATENT MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
148-175

PROTEIN 1
B95-8)

PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
294-321

B95-8)

PLMP1_EBVC
LATENT MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
148-175

PROTEIN 1
CAO)

PLMP1_EBVR
LATENT MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
148-175

PROTEIN 1
RAJI)

PUL32_HSVEB
MAJOR ENVELOPE
EQUINE HERPESVIRUS TYPE 1
345-375

GLYCOPROTEIN 300

PVGLC_HSVEB
GLYCOPROTEIN C
EQUINE HERPESVIRUS TYPE 1
124-151

PRECURSOR

PVGLB_HSVE1
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
443-470
934-961

PRECURSOR
(ISOLATE HVS25A)

PVGLB_HSVEA
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
443-470
934-961

PRECURSOR
(STRAIN AB1)

PATI2_HSVEB
ALPHA TRANS-IND FACTOR
EQUINE HERPESVIRUS TYPE 1
294-321

82 KD PRO
(STRAIN AB4P)

PATIN_HSVEB
ALPHA TRANS-IND PROTEIN
EQUINE HERPESVIRUS TYPE 1
255-289

(STRAIN AB4P)

PHELI_HSVEB
PROBABLE HELICASE
EQUINE HERPESVIRUS TYPE 1
184-211
321-348

(STRAIN AB4P)

PRIRI_HSVEB
RIBONUC-DIPHOSPH
EQUINE HERPESVIRUS TYPE 1
75-102

REDUCT LARGE CHAS
(STRAIN AB4P)

PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1
229-256
566-593
1205-1232

(STRAIN AB4P)

PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1
640-667

(STRAIN AB4P)

PUL14_HSVEB
HYPOTHETICAL GENE 48
EQUINE HERPESVIRUS TYPE 1
247-286

PROTEIN
(STRAIN AB4P)

PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1
44-71

(STRAIN AB4P)

PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1
715-749
987-1014

(STRAIN AB4P)

PUL52_HSVEB
DNA REPLICATION PROTEIN
EQUINE HERPESVIRUS TYPE 1
193-220
943-970

UL52
(STRAIN AB4P)

PVG03_HSVEB
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1
146-176

(STRAIN AB4P)

PVGLB_HSVEB
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
443-470
934-961

PRECURSOR
(STRAIN AB4P)

PVGLG_HSVEB
GLYCOPROTEIN G
EQUINE HERPESVIRUS TYPE 1
383-410

PRECURSOR
(STRAIN AB4P)

VIMP_HSVEB
PROB INTEGRAL MEMBRANE
EQUINE HERPESVIRUS TYPE 1
147-174

PROTEIN
(STRAIN AB4P)

PVP26_HSVEB
CAPSI PROTEIN VP26
EQUINE HERPESVIRUS TYPE 1
36-63

(STRAIN AB4P)

PVG03_HSVEK
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1
146-176

(STRAIN KENTUCKY A)

PVGLB_HSVEL
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
443-470
933-960

PRECURSOR
(STRAIN KENTUCKY D)

PCELF_HSVEB
CELL FUSION PROTEIN
EQUINE HERPESVIRUS TYPE 1
312-339

PRECURSOR
(STRAINS AB4P and Ky A)

PUL47_HSVE4
97 KD ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE 4
190-27

PVGLB_HSVE4
GLYCOPROTEIN B
EQUINE HERPES VIRUS TYPE 4
486-513
616-643

PRECURSOR

PVGLG_HSVE4
GLYCOPROTEIN G
EQUINE HERPES VIRUS TYPE 4
271-298

PRECURSOR

PDUT_HSVE4
DEOXYU 5′-TRIPHOSPH
EQUINE HERPESVIRUS TYPE 4
90-117

NUCHYDROLASE
(STRAIN 1942)

PVE2_PAPVE
PROBABLE E2 PROTEIN
EUROPEAN ELK PAPILLOMA-
120-150

VIRUS

PENV_FIVPE
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY
650-680
722-749

VIRUS (ISOLATE PETALUMA)

PPOL_FIVPE
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY
442-473

VIRUS (ISOLATE PETALUMA)

PENV_FIVSD
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY
639-668
720-747

VIRUS (ISOLATE SAN DIEGO)

PENV_FIVT2
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY
640-679
721-748

VIRUS (ISOLATE TM2)

PENV_FLVC6
ENV POLYPROTEIN
FELINE LEUKEMIA PROVIRUS
509-538

(CLONE CFE-6)

PMYC_FLVTT
MYC TRANSFORMING
FELINE LEUKEMIA PROVIRUS
393-420

PROTEIN
FTT

PMYC_FLV
MYC TRANSFORMING
FELINE LEUKEMIA VIRUS
393-420

PROTEIN

PENV_FLVGL
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
490-519

(STRAIN A/GLASGOW-1)

PENV_FLVLB
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
510-539

(STRAIN LAMBDA-B1)

PENV_FLVSA
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
487-516

(STRAIN SARMA)

PENV_MLVF5
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
523-553

VIRUS (ISOLATE 57)

PENV_MLVTF
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
523-553

VIRUS (ISOLATE FB29)

PENV_MLVFP
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
523-553

VIRUS (ISOLATE PVC-211)

PENV_GALV
ENV POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
176-203
523-564

PGAG_GALV
GAG POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
396-442
447-474

PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
535-562
676-703

PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS
271-325

VIRUS

PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1117-1149
1454-1481

18F)

PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1117-1149
1454-1481

24A)

PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1117-1149
1454-1481

43C)

PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237

CR326)

PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
182-216

GA76)

PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1103-1149

HM-175)

PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1103-1149

LA)

PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1103-1149

MBB)

PDPOL_HPBVP
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
456-483

ADW/STRAIN PHILIPPINO/

PFDW294)

PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
443-470

ADYW)

PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
702-729

PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
702-729
1045-1072

BK)

PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H)
702-729
1045-1072

PPOLG_HCJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
374-401
2089-2116

HC-J6)

PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
1049-1076
2089-2116

HC-J8)

PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
702-729
1045-1072

HC-JT)

PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
378-405
702-729
1045-1072

JAPANESE)

PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
702-729
1045-1072

TAIWAN)

PAANT_HDVAM
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133

(ISOLATE AMERICAN)

PAANT_HDVD3
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133

(ISOLATE AMERICAN)

PAANT_HDVS1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
16-43
106-133

(ISOLATE AMERICAN)

PAANT_HDVS2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
16-43
106-133

(ISOLATE AMERICAN)

PAANT_HDVWO
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133

(ISOLATE AMERICAN)

PAANT_HDVIT
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133

(ISOLATE AMERICAN)

PAANT_HDVM2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133

(ISOLATE AMERICAN)

PPOLN_HEVBU
NON-STRUCTURAL POLY-
HEPATITIS E VIRUS (STRAIN
219-246
349-376

PROTEIN
BURMA)

PPOLN_HEVME
NON-STRUCTURAL POLY-
HEPATITIS E VIRUS (STRAIN
219-246
349-376

PROTEIN
MEXICO)

PPOLN_HEVMY
N-STRUCTURAL POLY-
HEPATITIS E VIRUS (STRAIN
219-246
349-376

PROTEIN
MYANMAR)

PPOLN_HEVPA
NON-STRUCTURAL POLY-
HEPATITIS E VIRUS (STRAIN
218-245
348-375

PROTEIN
PAKISTAN)

PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
5-39

PVMSA_HPBHE
MAJOR SURFACE ANTIGEN
HERON HEPATITIS B VIRUS
294-328

PRECURSOR

PIE63_HSV11
TRANSCRIPTIONAL
HERPES SIMPLEX VIRUS
248-275

REGULATOR IE63
(TYPE 1/STRAIN 17)

PIE68_HSV11
IMMEDIATE-EARLY
HERPES SIMPLEX VIRUS
40-67

PROTEIN IE68
(TYPE 1/STRAIN 17)

PTEGU_HSV11
LARGE TEGUMENT
HERPES SIMPLEX VIRUS
667-694
1673-1710

PROTEIN
(TYPE 1/STRAIN 17)

PUL06_HSV11
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS
586-613

(TYPE 1/STRAIN 17)

PUL34_HSV11
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS
116-143

(TYPE 1/STRAIN 17)

PUL37_HSV11
PROTEIN UL37
HERPES SIMPLEX VIRUS
470-497
853-884

(TYPE 1/STRAIN 17)

PUL42_HSV11
DNA-BINDING PROTEIN UL42
HERPES SIMPLEX VIRUS
231-258

(TYPE 1/STRAIN 17)

PUL47_HSV11
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS
488-515

(TYPE 1/STRAIN 17)

PVGLC_HSV11
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
469-510

PRECURCOR
(TYPE 1/STRAIN 17)

PAT12_HSV11
ALPHA TRANS-IND FACTOR
HERPES SIMPLEX VIRUS
308-335

78 KD PRO
(TYPE 1/STRAIN 17)

PUL47_HSV1F
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS
488-515

(TYPE 1/STRAIN F)

PAT12_HSV1F
ALPHA TRANS-IND FACTOR
HERPES SIMPLEX VIRUS
308-335

77 KD PRO
(TYPE 1/STRAIN F)

PVGLC_HSV1K
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
469-510

PRECURSOR
(TYPE 1/STRAIN KOS)

PVGLE_HSV2
GLYCOPROTEIN E
HERPES SIMPLEX VIRUS
111-148

PRECURSOR
(TYPE 2)

PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
102-129
228-262
567-611
962-993
1098-1181
1661-1688
1884-1911

(TYPE 6/STRAIN GS)

PVGLH_HSV6G
GLYCOPROTEIN H
HERPES SIMPLEX VIRUS
62-89
360-403

PRECURSOR
(TYPE 6/STRAIN GS)

PYRF1_HSV6G
HYPOTHETICAL PROTEIN RF1
HERPES SIMPLEX VIRUS
208-235

(TYPE 6/STRAIN GS)

PYRF2_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS
223-257
268-299

(TYPE 6/STRAIN GS)

PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS
141-168

(TYPE 6/STRAIN GS)

PYRF4_HSV6G
HYPOTHETICAL PROTEIN RF4
HERPES SIMPLEX VIRUS
404-441

(TYPE 6/STRAIN GS)

PP100_HSV6J
MAJOR ANTIGENIC
HERPES SIMPLEX VIRUS
81-108
189-216
688-715
785-812

STRUCTL PROTEIN
(TYPE 6/STRAIN UGANDA-1102)

PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS
536-563
729-768

(TYPE 6/STRAIN UGANDA-1102)

PUL95_HSV6U
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS
73-100
105-134

(TYPE 6/STRAIN UGANDA-1102)

PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS
136-170
355-382

(TYPE 6/STRAIN UGANDA-1102)

PVTER_HSV6U
PROBABLE DNA PACKAGING
HERPES SIMPLEX VIRUS
176-203

PROTEIN
(TYPE 6/STRAIN UGANDA-1102)

PTYSY_HSVAT
THYMIDYLATE SYNTHASE
HERPESVIRUS ATELES
116-143

PDPOL_HSVSA
DNA POLYMERASE
HERPESVIRUS SAIMIRI
625-652

(STRAIN 11)

PDUT_HSVSA
DEOXYU 5′-TRIPHOSPH
HERPESVIRUS SAIMIRI
179-213

NUCHYDROLASE
(STRAIN 11)

PHEL1_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI
418-449

(STRAIN 11)

PIC18_HSVSA
PROBABLE PROC &
HERPESVIRUS SAIMIRI
58-85
482-522

TRANSPORT PRO
(STRAIN 11)

PIE68_HSVSA
IMMEDIATE-EARLY PROTEIN
HERPESVIRUS SAIMIRI
48-78

(STRAIN 11)

PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI
340-386

(STRAIN 11)

PRIR1_HSVSA
RIBONUC-DIPHOSPH
HERPESVIRUS SAIMIRI
324-351

REDUCT LARGE CHA
(STRAIN 11)

PTEGU_HSVSA
PROBABLE LARGE
HERPESVIRUS SAIMIRI
524-607
672-700
777-814
846-898
949-986
990-1017
1467-1497
2102-2135

TEGUMENT PROTEIN
(STRAIN 11)

PTYSY_HSVSA
THYMIDYLATE SYNTHASE
HERPESVIRUS SAIMIRI
120-147

(STRAIN 11)

PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI
15-42
302-358
368-402

(STRAIN 11)

PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI
34-61
204-231
362-389

(STRAIN 11)

PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI
208-235

(STRAIN 11)

PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI
31-65
685-737

(STRAIN 11)

PUL52_HSVSA
PROB DNA REP GENE 56
HERPESVIRUS SAIMIRI
130-157

PROTEIN
(STRAIN 11)

PUL73_HSVSA
HYPOTHETICAL GENE 53
HERPESVIRUS SAIMIRI
9-36

PROTEIN
(STRAIN 11)

PUL87_HSVSA
HYPOTHETICAL GENE 24
HERPESVIRUS SAIMIRI
582-609

PROTEIN
(STRAIN 11)

PUL92_HSVSA
HYPOTHETICAL GENE 31
HERPESVIRUS SAIMIRI
92-122

PROTEIN
(STRAIN 11)

PUNG_HSVSA
URACIL-DNA GLYCOSYLASE
HERPESVIRUS SAIMIRI
135-176

(STRAIN 11)

PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI
769-799

(STRAIN 11)

PVG45_HSVSA
HYPOTHETICAL GENE 45
HERPESVIRUS SAIMIRI
138-165

PROTEIN
(STRAIN 11)

PVG48_HSVSA
HYPOTHETICAL GENE 48
HERPESVIRUS SAIMIRI
360-394

PROTEIN
(STRAIN 11)

PVG52_HSVSA
HYPOTHETICAL GENE 52
HERPESVIRUS SAIMIRI
47-74

PROTEIN
(STRAIN 11)

PVGLH_HSVSA
GLYCOPROTEIN H
HERPESVIRUS SAIMIRI
388-415

PRECURSOR
(STRAIN 11)

VIMP_HSVSA
INTEGRAL MEMBRANE
HERPESVIRUS SAIMIRI
80-107

PROTEIN
(STRAIN 11)

PVP23_HSVSA
PROBABLE CAPSID PROTEIN
HERPESVIRUS SAIMIRI
2-29

VP23
(STRAIN 11)

PVP26_HSVSA
CAPSID PROTEIN VP26
HERPESVIRUS SAIMIRI
48-75

(STRAIN 11)

PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI
205-232
344-372

(STRAIN 11)

PVP75_HSVSA
PROBABLE MEMBRANE
HERPESVIRUS SAIMIRI
181-208
929-977

ANTIGEN 75
(STRAIN 11)

PDNBI_HSVSA
MAJOR DNA-BINDING
HERPESVIRUS SAIMIRI
333-368
512-539

PROTEIN
(STRAIN 11)

PCGH2_HSVSA
CYCLIN HOMOLOG
HERPESVIRUS SAIMIRI
127-154

(STRAIN 11)

PYDH1_HSVS7
HYPOTH 24.1 KD IN DHFR
HERPESVIRUS SAIMIRI
161-188

3′REGION
(STRAIN 484-77)

PYDH1_HSVSC
HYPOTH 28.7 KD IN DHFR
HERPESVIRUS SAIMIRI
52-82

3′REGION
(SUBGROUP C/STRAIN 488)

PYDH4_HSVSC
HYPOTH 9.9 KD IN
HERPESVIRUS SAIMIRI
53-83

3′REGION
(SUBGROUP C/STRAIN 488)

PENV_MLVHO
ENV POLYPROTEIN
HOMULV MURINE LEUKEMIA
510-540

VIRUS

PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS
753-780

(STRAIN AD169)

PIC18_HCMVA
PROB PROC 7 TRANSPORT
HUMAN CYTOMEGALOVIRUS
294-324

PRO UL56
(STRAIN AD169)

PIR05_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
22-49

IRL5
(STRAIN AD169)

PIR12_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
74-162

IRL12
(STRAIN AD169)

PIR13_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
31-62

IRL13
(STRAIN AD169)

PRIR1_HCMVA
RIBONUC-DIPHOSPH
HUMAN CYTOMEGALOVIRUS
622-649

REDUCT LARGE CHA
(STRAIN AD169)

PTEGU_HCMVA
PROBABLE LARGE
HUMAN CYTOMEGALOVIRUS
1251-1281
2202-2229

TEGUMENT PROTEIN
(STRAIN AD169)

PUL08_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
6-47

UL8
(STRAIN AD169)

PUL13_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
347-374

UL13
(STRAIN AD169)

PUL16_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
81-112

UL16
(STRAIN AD169)

PUL20_HCMVA
HYPOTH PRO UL20
HUMAN CYTOMEGALOVIRUS
34-61

PRECURSOR
(STRAIN AD169)

PUL31_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
167-194
254-284

UL31
(STRAIN AD169)

PUL35_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
533-562

UL35
(STRAIN AD169)

PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS
114-148
448-485
763-790
802-853

(STRAIN AD169)

PUL50_HCMVA
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS
159-186

(STRAIN AD169)

PUL59_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
74-101

UL59
(STRAIN AD169)

PUL70_HCMVA
PROB DNA REP PROTEIN UL70
HUMAN CYTOMEGALOVIRUS
65-92

(STRAIN AD169)

PUL73_HCMVA
UL73 GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS
5-73

PRECURSOR
(STRAIN AD169)

PUL74_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
45-79

UL74
(STRAIN AD169)

PUL93_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS
26-53
314-381

(STRAIN AD169)

PUL95_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
37-71

UL95
(STRAIN AD169)

PULA4_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS
4-31
443-477

(STRAIN AD169)

PULB9_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
33-78

UL119
(STRAIN AD169)

PULD0_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
90-124

UL130
(STRAIN AD169)

PUS09_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
20-47

HXLF3
(STRAIN AD169)

PUS14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
277-308

HVLF4
(STRAIN AD169)

PUS18_HCMVA
MEMBRANE PROTEIN
HUMAN CYTOMEGALOVIRUS
191-218

HWLF5
(STRAIN AD169)

PVGLB_HCMVA
GLYCOPROTEIN B
HUMAN CYTOMEGALOVIRUS
25-88
397-424
440-467
851-878

PRECURSOR
(STRAIN AD169)

PVGLH_HCMVA
GLYCOPROTEIN H
HUMAN CYTOMEGALOVIRUS
107-136
270-297

PRECURSOR
(STRAIN AD169)

PVGLI_HCMVA
IE GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS
47-111

PRECURSOR
(STRAIN AD169)

PVTER_HCMVA
PROBABLE DNA
HUMAN CYTOMEGALOVIRUS
417-451

PACKAGING PROTEIN
(STRAIN AD169)

PDNBI_HCMVA
MAJOR DNA-BINDING
HUMAN CYTOMEGALOVIRUS
437-464

PROTEIN
(STRAIN AD169)

PV30K_HCMVE
30 KD MAJOR EARLY
HUMAN CYTOMEGALOVIRUS
194-221

PROTEIN
(STRAIN EISENHARDT)

PVGLB_HCMVT
GLYCOPROTEIN B
HUMAN CYTOMEGALOVIRUS
50-88
397-424
435-462
852-879

PRECURSOR
(STRAIN TOWNE)

PVGLH_HCMVT
GLYCOPROTEIN H
HUMAN CYTOMEGALOVIRUS
106-135

PRECURSOR
(STRAIN TOWNE)

PENV_HV1A2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
544-592
630-682
790-825

VIRUS TYPE 1 (ARV2/SF2

ISOLATE)

PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
91-118

VIRUS TYPE 1 (ARV2/SF2

ISOLATE)

PPOL_HV1A2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
218-245
620-661

VIRUS TYPE 1 (ARV2/SF2

ISOLATE)

PVPU_HV1A2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
3-31

VIRUS TYPE 1 (ARV2/SF2

ISOLATE)

PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
5-48

VIRUS TYPE 1 (BH10 AND

HXB3 ISOLATES)

PENV_HV1B1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
631-683
791-818

VIRUS TYPE 1 (BH10 ISOLATE)

PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
230-257
637-673

VIRUS TYPE 1 (BH10 ISOLATE)

PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
230-257
632-673

VIRUS TYPE 1 (BH5 ISOLATE)

PENV_HV1B8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
540-589
626-678
786-813

VIRUS TYPE 1 (BH8 ISOLATE)

PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
21-48

VIRUS TYPE 1 (BH8 ISOLATE)

PENV_HV1BN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
267-294
338-365
562-590
628-679
787-815

VIRUS TYPE 1 (BRAIN ISOLATE)

PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
22-49

VIRUS TYPE 1 (BRAIN ISOLATE)

PENV_HV1BR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
550-599
636-688
796-823

VIRUS TYPE 1 (BRU ISOLATE)

PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
230-257
632-673

VIRUS TYPE 1 (BRU ISOLATE)

PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
5-48

VIRUS TYPE 1 (BRU ISOLATE)

PENV_HV1C4
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
397-424
557-606
643-695
803-835

VIRUS TYPE 1 (CDC-451

ISOLATE)

PVPU_HV1C4
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
3-30

VIRUS TYPE 1 (CDC-451

ISOLATE)

PENV_HV1EL
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
255-296
386-413
543-591
628-680

VIRUS TYPE 1 (ELI ISOLATE)

PNEV_HV1EL
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
81-119

VIRUS TYPE 1 (ELI ISOLATE)

PPOL_HVIEL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
624-660

VIRUS TYPE 1 (ELI ISOLATE)

PVPU_HV1EL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
6-33

VIRUS TYPE 1 (ELI ISOLATE)

PENV_HV1H2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
631-683
791-818

VIRUS TYPE 1 (HXB2 ISOLATE)

PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
218-245
620-661
921-951

VIRUS TYPE 1 (HXB2 ISOLATE)

PVPU_HV1H2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
5-48

VIRUS TYPE 1 (HSB2 ISOLATE)

PENV_HV1H3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
631-683
791-818

VIRUS TYPE 1 (HSB3 ISOLATE)

PENV_HV1J3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
350-377
556-605
642-694
802-829

VIRUS TYPE 1 (JH3 ISOLATE)

PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
91-118

VIRUS TYPE 1 (JH3 ISOLATE)

PVPU_HV1J3
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
2-29

VIRUS TYPE 1 (JH3 ISOLATE)

PENV_HV1JR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
336-363
622-675
783-811

VIRUS TYPE 1 (JRCSF ISOLATE)

PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
222-249
624-665

VIRUS TYPE 1 (JRCSF ISOLATE)

PVPU_HV1JR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
22-49

VIRUS TYPE 1 (JRCSF ISOLATE)

PENV_HV1MA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
547-595
633-707
794-826

VIRUS TYPE 1 (MAL ISOLATE)

PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
476-510
619-660

VIRUS TYPE 1 (MAL ISOLATE)

PVPU_HV1MA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
5-32

VIRUS TYPE 1 (MAL ISOLATE)

PENV_HV1MF
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
543-592
629-681
789-816

VIRUS TYPE 1 (MFA ISOLATE)

PENV_HV1MN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
343-370
567-595
632-684
791-819

VIRUS TYPE 1 (MN ISOLATE)

PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
87-118

VIRUS TYPE 1 (MN ISOLATE)

PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
221-248
623-664

VIRUS TYPE 1 (MN ISOLATE)

PENV_HV1ND
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
249-290
536-583
621-673
783-813

VIRUS TYPE 1 (NDK ISOLATE)

PNEF_HV1ND
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
81-119

VIRUS TYPE 1 (NDK ISOLATE)

PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
624-660

VIRUS TYPE 1 (NDK ISOLATE)

PVPU_HV1ND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
6-33

VIRUS TYPE 1 (NDK ISOLATE)

PENV_HV1N5
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
326-360

VIRUS TYPE 1 (NEW YORK-5

ISOLATE

PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
218-245
625-661

VIRUS TYPE 1 (NEW YORK-5

ISOLATE

PENV_HV1OY
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
544-591
630-704
789-820

VIRUS TYPE 1 (OY1 ISOLATE)

PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
218-245
620-661

VIRUS TYPE 1 (OY1 ISOLATE)

PENV_HV1PV
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
631-683
791-818

VIRUS TYPE 1 (PV22 ISOLATE)

PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
230-257
637-673

VIRUS TYPE 1 (PV22 ISOLATE)

PVPU_HV1PV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
5-48

VIRUS TYPE 1 (PV22 ISOLATE)

PENV_HV1RH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
280-307
351-378
554-602
640-692
800-832

VIRUS TYPE 1 (RF/HAT

ISOLATE)

PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
619-660

VIRUS TYPE 1 (RF/HAT

ISOLATE)

VIF_HV1RH
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY
62-89

VIRUS TYPE 1 (RF/HAT

ISOLATE)

PENV_HV1SC
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
338-365
545-593
631-683

VIRUS TYPE 1 (SC ISOLATE)

PENV_HV1S1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
333-363
536-585
622-674
782-809

VIRUS TYPE 1 (SF162 ISOLATE)

PVPU_HV1S1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
22-49

VIRUS TYPE 1 (SF162 ISOLATE)

PENV_HV1S3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
541-589
627-679
787-815

VIRUS TYPE 1 (SF33 ISOLATE)

PENV_HV1KB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
274-301
555-596
637-677
776-824

VIRUS TYPE 1 (STRAIN

KB-1-GP32)

PPOL_HVIU4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
513-540
619-660

VIRUS TYPE 1 (STRAIN

UGANDAN/ISOLATE U)

PENV_HV1W1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
338-365
545-593
631-683
791-818

VIRUS TYPE 1 (WMJ1 ISOLATE)

PENV_HV1W2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
334-361
536-584
622-674
782-809

VIRUS TYPE 1 (WMJ2 ISOLATE)

PENV_HV1Z8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
266-307
573-601
634-678
797-828

VIRUS TYPE 1 (Z-84 ISOLATE)

PENV_HV1Z2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
255-296
542-591
628-680
790-820

VIRUS TYPE 1 (Z2/CDC-Z34

ISOLATE)

PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
619-660

VIRUS TYPE 1 (Z2/CDC-Z34

ISOLATE)

PENV_HV1Z3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
251-292

VIRUS TYPE 1 (ZAIRE 3

ISOLATE)

PENV_HV1Z6
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
256-297
545-593
630-682
792-822

VIRUS TYPE 1 (ZAIRE 6

ISOLATE)

PNEF_HV1Z6
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
86-124

VIRUS TYPE 1 (ZAIRE 6

ISOLATE)

PENV_HZ1ZH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
627-666
791-823

VIRUS TYPE 1 (ZAIRE HZ321

ISOLATE)

PENV_HV2BE
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
61-88
532-591
621-648
653-697

VIRUS TYPE 2 (ISOLATE BEN)

PGAG_HV2BE
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
88-115

VIRUS TYPE 2 (ISOLATE BEN)

PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
491-582

VIRUS TYPE 2 (ISOLATE BEN)

PENV_HV2CA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
534-593
623-650
655-699

VIRUS TYPE 2 (ISOLATE CAM2)

PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
471-562

VIRUS TYPE 2 (ISOLATE CAM2)

PENV_HV2D1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
61-88
523-550
555-582
644-688

VIRUS TYPE 2 (ISOLATE D194)

PGAG_HV2D1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
88-115

VIRUS TYPE 2 (ISOLATE D194)

PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
509-600

VIRUS TYPE 2 (ISOLATE D194)

PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
491-568

VIRUS TYPE 2 (ISOLATE D205,7)

PENV_HV2G1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
60-87
524-551
556-583
613-640
645-693

VIRUS TYPE 2 (ISOLATE

GHANA-1)

PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
471-562

VIRUS TYPE 2 (ISOLATE

GHANA-1)

PENV_HV2NZ
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
61-88
524-551
556-583
613-640
662-689

VIRUS TYPE 2 (ISOLATE NIH-Z)

PGAG_HV2NZ
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
88-115

VIRUS TYPE 2 (ISOLATE NIH-Z)

PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
471-529

VIRUS TYPE 2 (ISOLATE NIH-Z)

PENV_HV2RO
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
58-85
533-592
622-698

VIRUS TYPE 2 (ISOLATE ROD)

PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
472-563

VIRUS TYPE 2 (ISOLATE ROD)

PENV_HV2SB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
557-584
614-673

VIRUS TYPE 2 (ISOLATE SBLISY)

PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
473-562

VIRUS TYPE 2 (ISOLATE SBLISY)

PENV_HV2ST
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY 442-476
527-554
559-586
648-692

VIRUS TYPE 2 (ISOLATE ST)

PGAG_HV2ST
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
88-115

VIRUS TYPE 2 (ISOLATE ST)

PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
491-582

VIRUS TYPE 2 (ISOLATE ST)

PENV_HV2S2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
442-476
527-554
559-586
648-682

VIRUS TYPE 2 (ISOLATE ST/24

1C#2)

PVE4_HPV11
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
81-108

TYPE 11

PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
30-60

TYPE 11

PVE2_HPV13
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
157-184
334-361

TYPE 13

PVE2_HPV16
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
61-105
312-342

TYPE 16

PVE4_PPV16
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
66-93

TYPE 16

PVE1_HPV18
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
60-87

TYPE 18

PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
313-340

TYPE 18

PVE4_HPV18
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
59-86

TYPE 18

PVE6_HPV18
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
75-102

TYPE 18

VL1_HPV18
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
183-210

TYPE 18

PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
159-186

TYPE 1A

VL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
407-445

TYPE 1A

PVE1_HPV2A
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
21-48

TYPE 2A

PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
159-193

TYPE 2A

PVE4_HPV31
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
75-102

TYPE 31

PVE6_HPV31
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
69-96

TYPE 31

PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
180-207

TYPE 33

PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
304-331

TYPE 33

VL1_HPV33
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
19-46

TYPE 33

PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
158-192
327-354

TYPE 35

PVE5_HPV35
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
27-54

TYPE 35

PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
103-130

TYPE 39

PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
7-34
323-357

TYPE 39

PVE6_HPV39
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
71-102

TYPE 39

PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
55-89

TYPE 41

PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
63-97

TYPE 41

PVE6_HPV41
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
119-146

TYPE 41

VL1_HPV41
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
345-372

TYPE 41

VL2_HPV41
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
415-442

TYPE 41

PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
25-59

TYPE 42

PVE6_HPV45
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
75-102

TYPE 45

PVE1_HPV47
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
146-173

TYPE 47

PVE2_HPV47
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
17-51
148-175
276-303

TYPE 47

PVE2_HPV05
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS
17-51

TYPE 5

PVE4_HPV05
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
202-229

TYPE 5

PVE2_HPV51
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
137-184

TYPE 51

PVE6_HPV51
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
72-99

TYPE 51

VL1_HPV51
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
19-46

TYPE 51

PVE1_HPV57
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
21-48

TYPE 57

PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
166-193

TYPE 57

PVE2_HPV58
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
2-36
309-336

TYPE 58

VL1_HPV58
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
45-72

TYPE 58

PVE2_HPV5B
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS
17-51

TYPE 5B

PVE4_HPV5B
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
202-229

TYPE 5B

PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
11-41

TYPE 5B

PVE5A_HPV6B
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
30-60

TYPE 6B

PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
30-60

TYPE 6C

VL1_HPV08
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
354-392

TYPE 8

PVE6_HPVME
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
71-102

TYPE ME180

PRRPP_PI1HB
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1
84-111
234-261
375-416

SUBUNIT
VIRUS (STRAIN C35)

PNCAP_PI1HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1
377-404
455-482

VIRUS (STRAIN C39)

PRRPP_PI1HC
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1
84-111
234-261
375-416

VIRUS (STRAIN C39)

PVGLF_PI1HC
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 1
147-174
210-266

PRECURSOR
VIRUS (STRAIN C39)

PRRPP_PI1HE
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1
84-111
244-271
375-416

SUBUNIT
VIRUS (STRAIN CI-14/83)

PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1
41-75

VIRUS (STRAIN CI-14/83)

PRRPP_PI1HD
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1
84-111
232-262
375-416

SUBUNIT
VIRUS (STRAIN CI-5/73)

PHEMA_PI1HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 1
79-110
366-393

NEURAMINIDASE
VIRUS (STRAIN WASHINGTON/

1957)

PNCAP_PI1HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1
377-404
444-488

VIRUS (STRAIN WASHINGTON/

1957)

PRRPP_PI2H
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2
167-194
222-256

SUBUNIT
VIRUS

PVGLF_PI2H
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2
90-117
141-175
238-266
483-528

PRECURSOR
VIRUS

PVGLF_PI2HG
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2
90-117
114-175
238-266
483-528

PRECURSOR
VIRUS (STRAIN GREER)

PRRPL_P12HT
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 2
322-349
1564-1598
1687-1721
1901-1946

SUBUNIT
VIRUS (STRAIN TOSHIBA)

PRRPP_PI2HT
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2
167-194
222-256

SUBUNIT
VIRUS (STRAIN TOSHIBA)

PVGLF_PI2HT
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2
90-117
141-175
238-266
483-528

PRECURSOR
VIRUS (STRAIN TOSHIBA)

PVMAT_PI2HT
MATRIX PROTEIN
HUMAN PARAINFLUENZA 2
96-123

VIRUS (STRAIN TOSHIBA)

PHEMA_PI3HA
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61

NEURAMINIDASE
VIRUS (STRAIN AUS/124854/74

PNCAP_PI3H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3
376-403

VIRUS (STRAIN NIH)47885

PHEMA_PI3H4
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61

NEURAMINIDASE
VIRUS (STRAIN NIH 47885)

PRRPL_PI3H4
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 3
52-86
136-163
608-638
1081-1123
1994-2036
2115-2142

SUBUNIT
VIRUS (STRAIN NIH 47885)

PRRRP_PI3H4
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 3
114-144
269-299

SUBUNIT
VIRUS (STRAIN NIH 47885)

PVGLF_PI3H4
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 3
115-182
207-241
457-497

PRECURSOR
VIRUS (STRAIN NIH 47885)

PVMAT_PI3HR
MATRIX PROTEIN
HUMAN PARAINFLUENZA 3
201-231

VIRUS (STRAIN NIH 47885)

PVNSC_PI3H4
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 3
58-99

VIRUS (STRAIN NIH 47885)

PHEMA_PI3HV
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61

NEURAMINIDASE
VIRUS (STRAIN TEX/12677/83)

PHEMA_PI3HT
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-76

NEURAMINIDASE
VIRUS (STRAIN TEX/545/80)

PHEMA_PI3HU
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
23-70

NEURAMINIDASE
VIRUS (STRAIN TEX/9305/82)

PHEMA_PI3HX
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61

NEURAMINIDASE
VIRUS (STRAIN WASH/1511/73)

PHEMA_PI3HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61

NEURAMINIDASE
VIRUS (STRAIN WASH/641/79)

PRRPP_PI4HA
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 4A
4-38

SUBUNIT
VIRUS (STRAIN TOSHIBA)

PVV_PI4HA
V PROTEIN
HUMAN PARAINFLUENZA 4A
4-38

VIRUS (STRAIN TOSHIBA)

PRRPP_HRSV
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY
99-141

SUBUNIT
SYNCYTIAL VIRUS

PNCAP_HRSVA
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY
4-31

SYNCYTIAL VIRUS (STRAIN A2)

PRRPL_HRSVA
RNA POLYMERASE BETA
HUMAN RESPIRATORY
103-192
210-237
667-694
788-815
1007-1034
1138-1165
1453-1480
1776-1803
2062-2089

SUBUNIT
SYNCYTIAL VIRUS (STRAIN A2)

PRRPP_HRSVA
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY
99-141

SUBUNIT
SYNCYTIAL VIRUS (STRAIN A2)

PVGLF_HRSVA
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
38-65
154-202
213-243
488-518

PRECURSOR
SYNCYTIAL VIRUS (STRAIN A2)

PVMA2_HRSVA
MATRIX GLYCOPROTEIN M2
HUMAN RESPIRATORY
124-151

SYNCYTIAL VIRUS (STRAIN A2)

PVMAT_HRSVA
MATRIX PROTEIN
HUMAN RESPIRATORY
219-246

SYNCYTIAL VIRUS (STRAIN A2)

PVGLG_HRSV4
MAJOR SURFACE
HUMAN RESPIRATORY
66-107

GLYCOPROTEIN G
SYNCYTIAL VIRUS (STRAIN

RSB5857)

PVGLG_HRSV5
MAJOR SURFACE
HUMAN RESPIRATORY
243-273

GLYCOPROTEIN G
SYNCYTIAL VIRUS (STRAIN

RSB6190)

PVGLF_HRSVR
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
38-65
154-202
213-243
442-471
488-518

PRECURSOR
VIRUS (STRAIN RSS-2)

PRRPP_HRSVL
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY
99-141

SUBUNIT
SYNCYTIAL VIRUS (SUBGROUP

A/STRAIN LONG)

PVGLF_HRSVL
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
38-65
154-202
216-243
444-471
488-515

PRECURSOR
SYNYTIAL VIRUS (SUBGROUP

A/STRAIN LONG)

PNCAP_HRSV1
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY
4-31
74-108
112-141

SYNCYTIAL VIRUS (SUBGROUP

B/STRAIN 18537)

PRRPP_HRSV1
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY
99-141

SUBUNIT
SYNCYTIAL VIRUS (SUBGROUP

B/STRAIN 18537)

PVGLF_HRSV1
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
38-65
154-203
442-471
488-515

PRECURSOR
SYNCYTIAL VIRUS (SUBGROUP

B/STRAIN 18537)

PVGLG_HRSV1
MAJOR SURFACE
HUMAN RESPIRATORY
63-93

GLYCOPROTEIN G
SYNCYTIAL VIRUS (SUBGROUP

B/STRAIN 18537)

PVGLG_HRSV8
MAJOR SURFACE
HUMAN RESPIRATORY
66-93

GLYCOPROTEIN G
SYNCYTIAL VIRUS (SUBGROUP

B/STRAIN 8/60)

PENV_HTL1C
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA
342-376

VIRUS TYPE 1 (CARIBBEAN

ISOLATE)

PPOL_HTL1C
POL POLYPROTEIN
HUMAN T-CELL LEUKEIMA
674-712

VIRUS TYPE I (CARIBBEAN

ISOLATE)

PENV_HTLIM
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA
342-376

VIRUS TYPE 1 (ISOLATE MT-2)

PENV_HTL1A
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA
342-376

VIRUS TYPE 1 (STRAIN ATK)

PPOL_HTL1A
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA
674-712

VIRUS TYPE 1 (STRAIN ATK)

PENV_HTLV2
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA
336-370

VIRUS TYPE II

PDPOL_HSVI1
DNA POLYMERASE
ICTALURID HERPES VIRUS 1
328-366
710-737

PKR74_HSVI1
GENE 74 PROTEIN KINASE
ICTALURID HERPES VIRUS 1
491-518

PVG07_HSVI1
HYPOTH GENE 7 MEMB PRO
ICTALURID HERPES VIRUS 1
71-98

PVG17_HSVI1
HYPOTHETICAL GENE 17
ICTALURID HERPES VIRUS 1
177-204

PROTEIN

PVG18_HSVI1
HYPOTHETICAL GENE 18
ICTALURID HERPES VIRUS 1
174-208

PROTEIN

PVG22_HSVI1
HYPOTHETICAL GENE 22
ICTALURID HERPES VIRUS 1
373-400
581-622
668-705
766-824

PROTEIN

PVG24_HSVI1
HYPOTHETICAL GENE 24
ICTALURID HERPES VIRUS 1
31-58

PROTEIN

PVG28_HSVI1
HYPOTHETICAL GENE 28
ICTALURID HERPES VIRUS 1
253-290
497-528

PROTEIN

PVG34_HSVI1
HYPOTHETICAL GENE 34
ICTALURID HERPES VIRUS 1
95-122

PROTEIN

PVG37_HSVI1
HYPOTHETICAL GENE 37
ICTALURID HERPES VIRUS 1
442-469

PROTEIN

PVG39_HSVI1
HYPOTHETICAL GENE 39
ICTALURID HERPES VIRUS 1
651-678
1088-1115

PROTEIN

PVG46_HSVI1
PROBABLE MAJOR
ICTALURID HERPES VIRUS 1
142-169
346-373
897-924
973-1007

GLYCOPROTEIN

PVG51_HSVI1
HYPOTH GENE 51
ICTALURID HERPES VIRUS 1
34-61
87-114

MEMBRANE PROTEIN

PVG56_HSVI1
HYPOTHETICAL GENE 56
ICTALURID HERPES VIRUS 1
582-609

PROTEIN

PVG63_HSVI1
HYPOTHETICAL GENE 63
ICTALURID HERPES VIRUS 1
550-584

PROTEIN

PVG64_HSVI1
HYPOTHETICAL GENE 64
ICTALURID HERPES VIRUS 1
477-504

PROTEIN

PVG65_HSVI1
HYPOTHETICAL GENE 65
ICTALURID HERPES VIRUS 1
1213-1254

PROTEIN

PVG66_HSVI1
HYPOTHETICAL GENE 66
ICTALURID HERPES VIRUS 1
362-406

PROTEIN

PVG67_HSVI1
HYPOTHETICAL GENE 67
ICTALURID HERPES VIRUS 1
1342-1369

PROTEIN

PVG68_HSVI1
HYPOTHETICAL GENE 68
ICTALURID HERPES VIRUS 1
261-288

PROTEIN

PVG72_HSVI1
HYPOTHETICAL GENE 72
ICTALURID HERPES VIRUS 1
447-481

PROTEIN

PVG75_HSVI1
HYPOTHETICAL GENE 75
ICTALURID HERPES VIRUS 1
388-422

PROTEIN

PVG76_HSVI1
HYPOTHETICAL GENE 76
ICTALURID HERPES VIRUS 1
200-227

PROTEIN

PVTER_HSVI1
PROBABLE DNA
ICTALURID HERPES VIRUS 1
710-737

PACKAGING PROTEIN

PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/SWITZERLAND/137/72

PHEMA_IAAIC
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453

AICHI/2/68)

PVNS1_IAALA
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
ALASKA/6/7)

PVNUC_IAANA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

ANA ACUTA/PRIMORJE/695/76)

PRRP2_IAANN
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
ANN ARBOR/6/60)

PVNS1_IAANN
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
ANN ARBOR/6/60)

PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

ANN ARBOR/6/60)

PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
24-51
371-437

BANGKOK/1/79)

PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
47-81

BLACK DUCK/AUSTRALIA/

702/78)

PVNUC_IABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

BRAZIL/11/78)

PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451

BUDGERIGAR/HOKKAIDO/1/77)

PRRP3_IABUD
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
537-567

SUB P3
BUDGERIGAR/HOKKAIDO/1/77)

PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

BUDGERIGAR/HOKKAIDO/1/77)

PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

CALIFORNIA/10/78)

PNRAM_IACAO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
33-64

CAMEL/MONGOLIA/82

PHEMA_IACAO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN A/
9-36

CAMEL/MONGOLIA/82)

PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451

CHICKEN/ALABAMA/1/75)

PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
31-58
382-441
494-528

CHICKEN/GERMANY/N/49)

PVNS1_IACKG
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
CHICKEN/GERMANY/N/49)

PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

CHICKEN/GERMANY/N/49)

PVNS1_IACKJ
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
168-195

NS1
CHICKEN/JAPAN/24)

PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
396-426

CHICKEN/PENNSYLVANIA/1/83)

PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

CHICKEN/PENNSYLVANIA/1/83)

PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
396-426

CHICKEN/PENNSYLVANIA/1370/

83)

PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
119-146
384-443

CHICKEN/VICTORIA/1/85)

PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43
50-91

CHILE/1/83)

PRRP3_IACHI
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
331-358

SUB P3
CHILE/1/83)

PVNS1_IACHI
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
CHILE/1/83)

PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451

DUCK/ALBERTA/28/76)

PNRAM_IADA1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
51-81

DUCK/ALBERTA/28/76)

PHEMA_IADA4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
418-478

DUCK/ALBERTA/35/76)

PHEMA_IADA2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
423-453
499-543

DUCK/ALBERTA/60/76)

PVNS1_IADA2
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
DUCK/ALBERTA/60/76)

PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453

DUCK/ALBERTA/78/76)

PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/AUSTRALIA/749/80)

PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/BEIJING/1/78)

PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451

DUCK/CZECHOSLOVAKIA/56)

PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/CZECHOSLOVAKIA/56)

PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/ENGLAND/1/)

PHEMA_IADE1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55
402-453
506-533

DUCK/ENGLAND/1/56)

PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/ENGLAND/1/62)

PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
21-48

DUCK/GERMANY/49)

PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437

DUCK/HOKKAIDO/10/85)

PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437

DUCK/HOKKAIDO/21/82)

PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437

DUCK/HOKKAIDO/33/80)

PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437

DUCK/HOKKAIDO/5/77)

PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437

DUCK/HOKKAIDO/7/82)

PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437

DUCK/HOKKAIDO/8/80)

PRRP2_IADH2
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
DUCK/HOKKAIDO/8/80)

PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437

DUCK/HOKKAIDO/9/85)

PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/HONG KONG/7/75)

PHEMA_IADIR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
413-445

DUCK/IRELAND/113/83)

PHEMA_IADMA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
31-58

DUCK/MANITOBA/1/53)

PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/MANITOBA/1/53)

PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-56

DUCK/MEMPHIS/546/76)

PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453

DUCK/MEMPHIS/928/74)

PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/MEMPHIS/928/74)

PHEMA_IADNY
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55

DUCK/NEW YORK/12/78)

PHEMA_IADNZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451

DUCK/NEW ZEALAND/31/76)

PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/NEW ZEALAND/31/76)

PHEMA_IADU1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55

DUCK/UKRAINE/1/60)

PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453

DUCK/UKRAINE/1/63)

PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

DUCK/UKRAINE/2/60)

PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

ENGLAND/19/55)

PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453

ENGLAND/321/77)

PHEMA_IAEN6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
24-51

ENGLAND/878/69)

PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/ALGIERS/72)

PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/C.DETROIT/1/64)

PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/CAMBRIDGE/1/63)

PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/CAMBRIDGE/1/73)

PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
197-224
386-413

EQUINE/COR/16/74)

PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/DETROIT/1/64)

PHEMA_IAHFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/FONTAINEBLEAU/76)

PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

EQUINE/JILLIN/1/89)

PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
5-44
46-76
364-400

EQUINE/KENTUCKY/1/81)

PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/KENTUCKY/1/87)

PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/KENTUCKY/2/86)

PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/LEXINGTON/1/66)

PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/LONDON/1416/73)

PRRP2_IAHLO
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
EQUINE/LONDON/1416/73)

PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

LONDON/1416/73)

PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/MIAMI/1/63)

PVNUC_IAHMI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

EQUINE/MIAMI/1/63)

PHEMA_IAHNN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/NEW MARKET/1/77)

PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/NEW MARKET/76)

PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/PRAGUE/1/56)

PRRP3_IAHPR
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
331-361
480-507

SUB P3
EQUINE/PRAGUE/1/56)

PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

EQUINE/PRAGUE/1/56)

PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/ROMANIA/80)

PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/SANTIAGO/1/85)

PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457

EQUINE/SAO PAULO/1/76)

PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/TENNESSEE/5/86)

PRRP2_IAHTE
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
EQUINE/TENNESSEE/5/86)

PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

EQUINE/TENNESSEE/5/86)

PHEMA_IAHTO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-455

EQUINE/TOKYO/71)

PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452

EQUINE/URUGUAY/1/63)

PVNS1_IAFOM
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
FORT MONMOUTH/1/47)

PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

FORT MONMOUTH/1/47)

PVNS1_IAFOW
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
FORT WARREN/1/50)

PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

FORT WARREN/1/50)

PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

FOWL PLAGUE VIRUS/DOBSON/

‘DUTCH’/27)

PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
177-221
384-442

FOWL PLAGUE VIRUS/

ROSTOCK/34)

PRRP2_IAFPR
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
FOWL PLAGUE VIRUS/

ROSTOCK/34)

PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

FOWL PLAGUE VIRUS/

ROSTOCK/34)

PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
10-48
52-80
197-224

FOWL PLAGUE VIRUS/

WEYBRIDGE)

PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451

GREY TEAL/AUSTRALIA/2/79)

PVNUC_IAURE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

GREY TEAL/AUSTRALIA/2/79)

PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
504-531

GULL/ASTRAKHAN/227/84)

PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
389-405

GULL/ASTRAKHAN/227/84)

PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

GULL/MARYLAND/1815/79)

PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

GULL/MARYLAND/1824/78)

PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

GULL/MARYLAND/5/77)

PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
505-532

GULL/MARYLAND/704/77)

PRRP2_IAGU2
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
GULL/MARYLAND/704/77)

PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

GULL/MARYLAND/704/77)

PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

GULL/MASSACHUSETTS/26/80)

PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

GULL/MINNESOTA/945/80)

PHEMA_IAHAR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56

HARBIN/1/88)

PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

HICKOX/40)

PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

HONG KONG/1/68)

PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

HONG KONG/5/83)

PHEMA_IAJAP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
196-223

JAPAN/305/57)

PHEMA_IAKIE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
425-478

KIEV/59/79)

PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-81

KIEV/59/79)

PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

KIEV/59/79)

PRRP1_IAKOR
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
575-602

SUB P1
KOREA/426/68)

PRRP2_IAKOR
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
KOREA/426/68)

PRRP2_IALE2
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
LENINGRAD/134/17/57)

PRRP2_IALE1
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
LENINGRAD/134/57)

PVNS1_IALE1
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
LENINGRAD/134/57)

PHEMA_IALEN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
425-478

LENINGRAD/54/1)

PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-81

LENINGRAD/54/1)

PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

LENINGRAD/54/1)

PVNS1_IAMA6
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
MALLARD/ALBERTA/88/76)

PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
380-450

MALLARD/ASTRAKHAN/244/82)

PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

MALLARD/ASTRAKHAN/244/82)

PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
385-455

MALLARD/ASTRAKHAN/263/82)

PRRP2_IAMAN
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
MALLARD/NEW YORK/6750/78)

PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

MALLARD/NEW YORK/6750/78)

PHEMA_IAMAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453

MALLARD/NEW YORK/6874/78)

PHEMA_IAME1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453

MEMPHIS/1/71)

PNRMA_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43
50-81

MEMPHIS/1/71H-A/BELLAMY/

42N)

PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453

MEMPHIS/102/72)

PHEMA_IAME6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
24-51
371-437

MEMPHIS/6/86)

PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
31-58
382-441

MINK/SWEDEN/84)

PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

MINK/SWEDEN/84)

PVNUC_IANEJ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

NEW JERSEY/8/76)

PHEMA_IANT6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453

NT/60/68)

PRRP2_IANT6
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
NT/60/68)

PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

NT/60/68)

PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

OHIO/4/83)

PNRAM_IAPAR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43
50-81

PARROT/ULSTER/73)

PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

PARROT/ULSTER/73)

PHEMA_IAPIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
505-534

PILOT WHALE/MAINE/328/84

PRRP2_IAP10
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
PINTAIL/ALBERTA/119/79)

PVNS1_IAPI1
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
PINTAIL/ALBERTA/121/79)

PVNS1_IAPI3
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
PINTAIL/ALBERTA/358/79)

PHEMA_IAPUE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
425-478

PUERTO RICO/8/34)

PNRAM_IAPUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43

PUERTO RICO/8/34)

PRRP2_IAPUE
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
PUERTO RICO/8/34)

PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

PUERTO RICO/8/34)

PHEMA_IAQU7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
24-51

QU/7/70)

PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451

RUDDY TURNSTONE/NEW

JERSEY/47/85)

PRRP2_IARUD
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
RUDDY TURNSTONE/NEW

JERSEY/47/85)

PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

RUDDY TURNSTONE/NEW

JERSEY/47/85)

PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-88

RUDDY TURNSTONE/NEW

JERSEY/60/85)

PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SEAL/MASSACHUSETTS/1/80)

PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451

SEAL/MASSACHUSETTS/133/82)

PHEMA_IASH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
28-56
160-187
506-547

SHEARWATER/AUSTRALIA/72)

PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SHEARWATER/AUSTRALIA/72)

PRRP2_IASIN
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
SINGAPORE/1/57)

PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378/405

SINGAPORE/1/57)

PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
119-146
384-443

STARLING/VICTORIA/5156/85)

PVNUC_IAZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/29/37)

PVNUC_IAZ41
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/41/49)

PVNUC_IAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/CAMBRIDGE/1/35)

PHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453

SWINE/COLORADO/1/77)

PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/DANDONG/9/83)

PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/GERMANY/2/81)

PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437

SWINE/HONG KONG/126/82)

PRRP2_IAZH3
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
SWINE/HONG KONG/126/82)

PVNUC_IAZH3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/HONG KONG/126/82)

PVNUC_IAZH4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/HONG KONG/127/82)

PVNUC_IAZH1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/HONG KONG/6/76)

PHEMA_IAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437

SWINE/HONG KONG/81/78)

PRRP2_IAZH2
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
SWINE/HONG KONG/81/78)

PHEMA_IAZIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
418-478
506-547

SWINE/INDIANA/1726/88)

PRRP2_IAZI1
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
SWINE/IOWA/15/30)

PVNUC_IAZI1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/IOWA/15/30)

PVNUC_IAZI2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/IOWA/1976/31)

PVNUC_IAZI3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/IOWA/46)

PVNUC_IAZJ3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/ITALY/141/81)

PVNUC_IAZJ2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/ITALY/2/79)

PVNUC_IAZJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/ITALY/437/76)

PVNUC_IAZJ4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/ITALY/839/89)

PVNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/JAMESBURG/42)

PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/MAY/54)

PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/NETHERLANDS/12/85)

PHEMA_IAZNJ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
418-478
506-547

SWINE/NEW JERSEY/11/76)

PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/OHIO/23/35)

PVNUC_IAZON
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/ONTARIO/2/81)

PRRP3_IAZTE
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
487-514

SUB P3
SWINE/TENNESSEE/24/77)

PVNUC_IAZTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

WINE/TENNESSEE/24/77)

PRRP2_IAZTF
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
SWINE/TENNESSEE/26/77)

PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453

SWINE/UKKEL/1/84)

PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/WISCONSIN/1/57)

PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

SWINE/WISCONSIN/1/61)

PHEMA_IATAI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
25-56

TAIWAN/1/86)

PVNUC_IATEI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

TEAL/ICELAND/29/80)

PHEMA_IATRA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55

TERN/AUSTRALIA/G70C/75)

PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-82

TERN/AUSTRALIA/G70C/75)

PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

TERN/SOUTH AFRICA/61)

PVNS1_IATRT
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
TERN/TURKMENIA/18/72)

PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

TERN/TURKMENIA/18/72)

PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

TEXAS/1/77)

PVNS1_IATKB
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
TURKEY/BETHLEHEM-GLILIT/

1492-B/82)

PVNS1_IATKC
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
TURKEY/CANADA/63)

PHEMA_IATKI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
415-445

TURKEY/IRELAND/1378/83)

PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

TURKEY/MINNESOTA/1661/81)

PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451

TURKEY/MINNESOTA/833/80)

PRRP2_IATKM
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
TURKEY/MINNESOTA/833/80)

PHEMA_IATKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
424-454
493-539

TURKEY/ONTARIO/6118/68)

PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
507-534

TURKEY/ONTARIO/7732/66)

PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

TURKEY/ONTARIO/7732/66)

PHEMA_IATKR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
32-62
194-221
381-422

TURKEY/OREGON/71)

PVNS2_IATKR
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
87-114

NS2
TURKEY/OREGON/71)

PHEMA_IATKW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
419-449
500-536

TURKEY/WISCONSIN/1/66)

PHEMA_IAUDO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453

UDORN/307/72)

PVNS1_IAUDO
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198

NS1
UDORN/307/72)

PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

UDORN/307/72)

PHEMA_IAUSS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
425-478

USSR/90/77)

PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-81

A/USSR/90/77)

PVNS1_IAUSS
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-98

NS1
USSR/90/77)

PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

USSR/90/77)

PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
41-68
388-454

VICTORIA/3/75)

PRRP2_IAVI7
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146
327-354

SUB P2
VICTORIA/3/75)

PVNUC_IAVI6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

VICTORIA/5/68)

PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-88

WHALE/MAINE/1/84)

PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

WHALE/MAINE/328/84)

PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

WHALE/PACIFIC OCEAN/19/76)

PHEMA_IAWIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
424-477

WILSON-SMITH/33)

PNRAM_IAWIL
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43

WILSON-SMITH/33)

PRRP2_IAWIL
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146

SUB P2
WILSON-SMITH/33)

PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

WILSON-SMITH/33)

PVNUC_IAWIS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405

WISCONSIN/3523/88)

PHEMA_IAXIA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56

XIANFENG/3/89)

PPRP2_INBAC
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
157-194

SUB P2
ANN ARBOR/1/66

[COLD-ADAPTED])

PRRP3_INBAC
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
2-33
472-509

SUB P3
ANN ARBOR/1/66

[COLD-ADAPTED])

PRRP2_INBAD
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
164-194

SUB P2
ANN ARBOR/1/66 [WILD-TYPE]

PRRP3_INBAD
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
2-33
472-509

SUB P3
ANN ARBOR/1/66 [WILD-TYPE]

PHEMA_INBBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
400-431
439-483

BEIJING/1/87)

PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
390-421
429-473

BONN/43)

PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
398-429
437-481

ENGLAND/222/82)

PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
391-418
429-473

HONG KONG/8/73)

PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
399-430
438-482

LEE/40)

PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
4-35

LEE/40)

PVNS2_INBLE
NONSTRUCTURAL PROTEIN
INFLUENZA B VIRUS (STRAIN B/
51-78

NS2
LEE/40)

PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
389-420
428-472

MARYLAND/59)

PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
393-424
432-476

MEMPHIS/6/86)

PHGEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
398-429
437-481

OREGON/5/80)

PVNS1_INBPA
NONSTRUCTURAL PROTEIN
INFLUENZA B VIRUS (STRAIN B/
171-198

NS1
PA/79)

PHEMA_INBSI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
398-429
437-481

SINGAPORE/222/79)

PRRP2_INBSI
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
157-194

SUB P2
SINGAPORE/222/79)

PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
391-422
430-474

USSR/100/83)

PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
400-431
439-483

VICTORIA/2/87)

PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
393-4224
432-476

VICTORIA/3/85)

PVNS2_INBYA
NONSTRUCTURAL PROTEIN
INFLUENZA B VIRUS (STRAIN B/
51-78

NS2
YAMAGATA/1/73)

PRRP3_INCBE
RNA-DIRECTED RNA POL
INFLUENZA C VIRUS (STRAIN C/
509-536

SUB P3
BERLIN/1/85)

PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
495-571

CALIFORNIA/78)

PVNUC_INCAA
NUCLEOPROTEIN
INFLUENZA C VIRUS (STRAIN C/
99-126
416-443
451-478

CALIFORNIA/78)

PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559

ENGLAND/892/83)

PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559

GREAT LAKES/1167/54)

PHEMA_INCHY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
482-558

HYOGO/1/83)

PRRP3_INCJJ
RNA-DIRECTED RNA POL
INFLUENZA C VIRUS (STRAIN C/
509-536

SUB P3
JJ/50)

PVMAT_INCJJ
MATRIX (M) PROTEIN
INFLUENZA C VIRUS (STRAIN C/
151-185

JJ/50)

PVNS2_INCJJ
NONSTRUCTURAL PROTEIN
INFLUENZA C VIRUS (STRAIN C/
71-98

NS2
JJ/50)

PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
496-572

JOHANNESBURG/1/66)

PHEMA_INCKY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
482-558

KYOTO/41/82)

PHEMA_INCMI
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
482-558

MISSISSIPPI/80)

PHEMA_INCNA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
482-558

NARA/82)

PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559

PIG/BEIJING/10/81)

PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559

PIG/BEIJING/115/81)

PHEMA_INCP3
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559

PIG/BEIJING/439/82)

PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559

TAYLOR/1233/47)

PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559

YAMAGATA/10/81)

PENV_MLVKI
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA
40-81

VIRUS

PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
MAREK'S DISEASE HERPES
93-120
352-379

VIRUS (STRAIN RB-1B)

PENV_MCFF
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING
473-512

MURINE LEUKEMIA VIRUS

PENV_MCFF3
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING
488-515

MURINE LEUKEMIA VIRUS

(ISOLATE CI-3)

PENV_MLVMO
ENV POLYPROTEIN
MOLONEY MURINE LEUKEMIA
502-543

VIRUS

PDNBI_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS
584-618

(STRAIN SMITH)

PIC18_MCMVS
PROB PROC & TRANSPORT PRO
MURINE CYTOMEGALOVIRUS
661-691

(STRAIN SMITH)

PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS
381-408
441-475

(STRAIN SMITH)

VIE1_MCMVS
IMMEDIATE-EARLY PROTEIN 1
MURINE CYTOMEGALOVIRUS
261-288

(STRAIN SMITH)

PVE2_PCPV1
E2 PROTEIN
PYGMY CHIMPANZEE
267-294
327-361

PAPILLOMA VIRUS TYPE 1

PVE5_PCPV1
PROBABLE E5 PROTEIN
PYGMY CHIMPANZEE
35-62

PAPILLOMA VIRUS TYPE 1

PENV_MLVRD
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA
497-538

VIRUS

PPOL_MLVRD
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA
716-743
805-832

VIRUS

PENV_MLVRK
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA
497-538

VIRUS (STRAIN KAPLAN)

PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA
101-128
190-217

VIRUS (STRAIN KAPLAN)

PDNBI_SCMBC
MAJOR DNA-BINDING PROTEIN
CIMIAN CYTOMEGALOVIRUS
435-462
532-559

(STRAIN COLBURN)

PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
207-241
1025-1052
1115-1192

(STRAIN AGM-27)

PPOLG_HPAVT
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
203-237

(STRAIN CY-145)

PENV_SIVA1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
269-310
561-588
592-619
652-679
697-724

VIRUS (AGM155 ISOLATE)

PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
431-458
547-574
637-671

VIRUS (AGM155 ISOLATE)

PPOL_SIVA2
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
45-72

VIRUS (AGM266 ISOLATE)

PENV_SIVAG
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
270-301
566-593
597-624
658-685
703-730

VIRUS (AGM3 ISOLATE)

PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
436-463
482-516
642-669

VIRUS (AGM3 ISOLATE)

PPOL_SIVA3
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
71-98

VIRUS (AGM385 ISOLATE)

PENV_SIVS4
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
281-308
553-612
642-669
691-718

VIRUS (F236/SMH4 ISOLATE)

PGAG_SIVS4
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
88-115

VIRUS (F236/SMH4 ISOLATE)

PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
496-523

VIRUS (F236/SMH4 ISOLATE)

PENV_SIVAI
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
257-291
336-372
548-603
634-708

VIRUS (ISOLATE AGM/CLONE

GRI-1)

PGAG_SIVAI
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
473-507

VIRUS (ISOLATE AGM/CLONE

GRI-1)

PNEF_SIVAI
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY
96-137

VIRUS (ISOLATE AGM/CLONE

GRI-1)

PPOL_SIVAI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
478-515

VIRUS (ISOLATE AGM/CLONE

GRI-1)

VIF_SIVAI
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY
2-36

VIRUS (ISOLATE AGM/CLONE

GRI-1)

PENV_SIVGB
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
8-35
158-185
589-650
784-816

VIRUS (ISOLATE GB1)

PPOL_SIVGB
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
222-254
636-670

VIRUS (ISOLATE GB1)

PENV_SIVMK
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
553-608

VIRUS (K6W ISOLATE)

PGAG_SIVMK
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
88-115

VIRUS (K6W ISOLATE)

PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
533-560

VIRUS (K6W ISOLATE)

PENV_SIVML
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
549-608

VIRUS (K78 ISOLATE)

PENV_SIVM1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
120-150
550-609
671-715

VIRUS (MM142-83 ISOLATE)

PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
553-560

VIRUS (MM142-83 ISOLATE)

PENV_SIVM2
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
156-215
277-289

VIRUS (MM251 ISOLATE)

PENV_SIVSP
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
286-313
554-595
646-722

VIRUS (PBJ/BC13 ISOLATE)

PGAG_SIVSP
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
88-115

VIRUS (PBJ/BC13 ISOLATE)

PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
499-526

VIRUS (PBJ/BC13 ISOLATE)

PGAG_SIVMS
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
88-115

VIRUS (STM ISOLATE)

PENV_SIVAT
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
3-30
268-298
590-617
651-678

VIRUS (TYO-1 ISOLATE)

PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
657-691

VIRUS (TYO-1 ISOLATE)

PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY
41-68

VIRUS (TYO-1 ISOLATE)

PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
422-470

PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
574-612
670-697

PGAG_MPMV
GAG POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
222-260

(MPMV)

PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS
109-139

(STRAIN DUMAS)

PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS
490-517
701-728

(STRAIN DUMAS)

PRIR1_VZVD
RIBONUC-DIPHOSPH
VARICELLA-ZOSTER VIRUS
119-146

REDUCT LARGE CHA
(STRAIN DUMAS)

PTEGU_VZVD
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS
1121-1158
1579-1609

(STRAIN DUMAS)

PUL14_VZVD
HYPOTHETICAL GENE 46
VARICELLA-ZOSTER VIRUS
64-101

PROTEIN
(STRAIN DUMAS)

PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS
380-407

(STRAIN DUMAS)

PUL34_VZVD
VIRION GENE 24 PROTEIN
VARICELLA-ZOSTER VIRUS
112-139

(STRAIN DUMAS)

PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS
107-134
485-512
719-746
976-1003

(STRAIN DUMAS)

PUL41_VZVD
HOST SHUTOFF VIRION
VARICELLA-ZOSTER VIRUS
330-364

PROTEIN
(STRAIN DUMAS)

PUL43_VZVD
GENE 15 MEMBRANE
VARICELLA-ZOSTER VIRUS
129-156
312-349

PROTEIN
(STRAIN DUMAS)

PUL52_VZVD
PROB DNA REP GENE 6
VARICELLA-ZOSTER VIRUS
301-337

PROTEIN
(STRAIN DUMAS)

PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS
295-322

(STRAIN DUMAS)

PVP40_VZVD
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS
174-208
495-522

(STRAIN DUMAS)

PVTER_VZVD
PROBABLE DNA PACKAGING
VARICELLA-ZOSTER VIRUS
394-421

PROTEIN
(STRAIN DUMAS)

PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS
295-322

(STRAIN SCOTT)

PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS
285-326

VIRUS 1

PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS
290-331

VIRUS 59

PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS
212-242
290-331

VIRUS 7

PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS
211-241
289-330

VIRUS 8

PDPOL_WHV8I
DNA POLYMERASE
WOODCHUCK HEPATITIS
212-242
290-331

VIRUS 8

TABLE VIII

107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY

FOR ALL PROCARYOTIC PROTEINS

PCGENE
107 × 178 × 4
Prokaryotic Sequences

FILE NAME
PROTEIN
ORGANISM
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9

P120K_RICRI
120 KD SURFACE-EXPOSED

RICKETTSIA RICKETTSII

83-110
240-298
355-382
638-672
746-838
1168-1202

PROTEIN

P17K_RICTY
17 KD ANTIGEN PRECURSOR

RICKETTSIA TYPHI

67-94

P190K_RICRI
190 KD ANTIGEN PRECURSOR

RICKETTSIA RICKETTSII

241-268
460-487
607-634
754-781
829-856
904-931
1220-1254
1544-1571
1723-1750

(CELL SURFACE)

2065-2096
2131-2168

P22KD_DESMO
22.6 KD PROTEIN

DESULFUROCOCCUS MOBILIS

25-52
59-89
120-147

P40KD_VIBAN
40 KD PROTEIN PRECURSOR

VIBRIO ANGUILLARUM

153-196

P60IM_ECOLI
60 KD INNER-MEMBRANE

ESCHERICHIA COLI

511-538

PROTEIN

P60IM_PROMI
60 KD INNER-MEMBRANE

PROTEUS MIRABILIS

14-41

PROTEIN

P65KD_ZYMMO
65 KD PROTEIN

ZYMOMONAS MOBILIS

95-122
444-524

P6PGD_BACSU
PROB 6-PHOSPHOGLUCONATE

BACILLUS SUBTILIS

24-51
218-246

DEHYDROGENASE

P6PGD_ECOLI
6-PHOSPHOGLUCONATE

ESCHERICHIA COLI

205-232

DEHYDROGENASE

P6PGD_SALTY
6-PHOSPHOGLUCONATE

SALMONELLA TYPHIMURIUM

205-232

DEHYDROGENASE

PAACA_STAAU
6′-AMINOGLYCOSIDE

STAPHYLOCOCCUS AUREUS

450-477

N-ACETYLTRANSFERASE

PAAT_BACSP
ASPARTATE AMINOTRANS-

BACILLUS SP
146-173
185-212

FERASE

PAAT_ECOLI
ASPARTATE AMINOTRANS-

ESCHERICHIA COLI

351-378

FERASE

PABC_ECOLI
ABC PROTEIN

ESCHERICHIA COLI

176-203

PABIC_LACLA
ABORTIVE PHAGE RESIS-

LACTOCOCCUS LACTIS

85-126
170-204
209-273

TANCE PROTEIN ABIC

PACCR_AGRTU
TRANSCRIPTIONAL

AGROBACTERIUM TUMEFACIENS

127-154

REPRESSOR ACCR

PACEA_ECOLI
ISOCITRATE LYASE

ESCHERICHIA COLI

398-432

PACON_BACSU
ACONITATE HYDRATASE

BACILLUS SUBTILIS

48-75

PACON_ECOLI
ACONITATE HYDRATASE

ESCHERICHIA COLI

41-68
613-640

PACOR_ALCEU
ACETOIN CATABOLISM REG

ALCALIGENES EUTROPHUS

85-112

PRO

PACP_ECOLI
ACYL CARRIER PROTEIN

ESCHERICHIA COLI

4-31

PACRA_ECOLI
ACRIFLAVIN RESISTANCE

ESCHERICHIA COLI

213-247

PROTEIN A PRECURSOR

PACRB_ECOLI
ACRIFLAVIN RESISTANCE

ESCHERICHIA COLI

520-551

PROTEIN B

PACRF_ECOLI
ACRIFLAVIN RESISTANCE

ESCHERICHIA COLI

512-550
726-753

PROTEIN F

PACT3_STRCO
PUTATIVE KETOACYL

STREPTOMYCES COELICOLOR

157-184

REDUCTASE

PACTA_LISMO
ACTIN-ASSEMBLY INDUCING

LISTERIA MONOCYTOGENES

237-264
576-603

PROTEIN PRECURSOR

PACVS_NOCLA
ACV SYNTHETASE

NOCARDIA LACTAMDURANS

3129-3163

PADAA_BACSU
METPHOSTRIESTER-DNA

BACILLUS SUBTILIS

136-170

ALKYLTRANSFERASE

PADDA_BACSU
ATP-DEPENDENT NUCLEASE

BACILLUS SUBTILIS

398-425
454-481
522-556
1005-1032

SUBUNIT A

PADDB_BACSU
ATP-DEPENDENT NUCLEASE

BACILLUS SUBTILIS

257-284
870-903
943-977

SUBUNIT B

PADHI_CLOAB
NADPH-DEPENDENT

CLOSTRIDIUM ACETOBUTYLICUM

284-311

BUTANOL DEHYDROGENASE

PADHA_CLOAB
NADH-DEPENDENT BUTANOL

CLOSTRIDIUM ACETOBUTYLICUM

298-325

DEHYDROGENASE A

PADHB_CLOAB
NADH-DEPENDENT BUTANOL

CLOSTRIDIUM ACETOBUTYLICUM

298-325

DEHYDROGENASE B

PADHE_CLOAB
ALCOHOL DEHYDROGENASE

CLOSTRIDIUM ACETOBUTYLICUM

653-680
779-806

PADHE_ECOLI
ALCOHOL DEHYDROGENASE

ESCHERICHIA COLI

271-298

PADIY_ECOLI
PUTATIVE REGULATORY

ESCHERICHIA COLI

45-72

PROTEIN ADIY

PADP1_MYCGE
140 KD ADHESION

MYCOPLASMA GENITALIUM

90-131
697-724
923-950
990-1017
1169-1199
1387-1414

PRECURSOR

PADP1_MYCPN
ADHESION P1 PRECURSOR

MYCOPLASMA PNEUMONIAE

1557-1584

PADT_RICPR
ADP, ATP CARRIER PROTEIN

RICKETTSIA PROWAZEKII

276-307

PAERA_AERHY
AEROLYSIN PRECURSOR

AEROMONAS HYDROPHILA

278-305

PAGAL_STRMU
ALPHA-GALACTOSIDASE

STREPTOCOCCUS MUTANS

419-483
597-633

PAGAR_PSEAT
BETA-AGARASE PRECURSOR

PSEUDOMONAS ATLANTICA

26-53

PAGR_STAAU
ACCESSORY GENE

STAPHYLOCOCCUS AUREUS

129-159
165-192

REGULATOR PROTEIN

PAIL_YEREN
ATTACH INVAS LOCUS

YERSINIA ENTEROCOLITICA

19-46

PROTEIN PRECURSOR

PAK1H_ECOLI
ASPARTOKINASE I

ESCHERICHIA COLI

3-30
466-493
503-530

PAK2H_ECOLI
ASPARTOKINASE II

ESCHERICHIA COLI

51-78
608-635

PAK2_BACSU
ASPARTATE KINASE II ALPHA

BACILLUS SUBTILIS

266-312

AND BETA SUBUNITS

PAKAB_CORGL
ASPARTATE KINASE ALPHA

CORYNEBACTERIUM GLUTMICUM

5-32

AND BETA SUBUNITS

PALF_ECOLI
FRUCTOSE-BISPHOSPHATE

ESCHERICHIA COLI

286-316

ALDOLASE

PALGB_PSEAE
ALGINATE BIOSYN TRANSL

PSEUDOMONAS AERUGINOSA

160-194

REG PROTEIN ALBG

PALGE_PSEAE
ALGINATE PRODUCTION

PSEUDOMONAS AERUGINOSA

349-376

PROTEIN ALGE PRECURSO

PALGP_PSEAE
TRANSCRIPTIONAL REGULA-

PSEUDOMONAS AERUGINOSA

81-115

TORY PROTEIN ALGP

PALKB_PSEOL
ALKANE-1 MONOOXYGENASE

PSEDOMONAS OLEOVORANS

115-142

PALKT_PSEOL
RUBREDOXIN-NAD(+)

PSEUDOMONAS OLEOVORANS

138-172
338-365

REDUCTASE

PALR2_ECOLI
ALANINE RACEMASE,

ESCHERICHIA COLI

9-36

CATABOLIC PRECURSOR

PALR_BACST
ALANINE RACEMASE

BACILLUS STEAROTHERMOPHILUS

326-353

PALSR_BACSU
ALS OPERON REGULATORY

BACILLUS SUBTILIS

119-146

PROTEIN

PALYS_BACSP
AUTOLYSIN PRECURSOR

BACILLUS SP
157-187

PALYS_BACSU
AUTOLYSIN PRECURSOR

BACILLUS SUBTILIS

147-191

PALYS_STAAU
AUTOLYSIN

STAPHYLOCOCCUS AUREUS

244-271

PAMIA_STRPN
AMIA PROTEIN PRECURSOR

STREPTOCOCCUS PNEUMONIAE

223-264
297-338
446-473

PAMID_PSECL
AMIDASE

PSEUDOMONAS CHLORORAPHIS

72-99

PAMIE_STRPN
OLIGOPEPTIDE TRANSPORT

STREPTOCOCCUS PNEUMONIAE

187-214

PROTEIN AMIE

PAMPA_ECOLI
AMINOPEPTIDASE A/I

ESCHERICHIA COLI

111-138
199-226

PAMPC_SERMA
BETA-LACTAMASE

SERRATIA MERCESCENS

231-258

PRECURSOR

PAMPL_RICPR
CYTOSOL AMINOPEPTIDASE

RICKETTSIA PROWAZEKII

3-47
72-99

PAMPN_ECOLI
AMINOPEPTIDASE N

ESCHERICHIA COLI

655-682

PAMPP_ECOLI
X-PRO AMINOPEPTIDASE

ESCHERICHIA COLI

110-137

PAMPT_THEAQ
AMINOPEPTIDASE T

THERMUS AQUATICUS

281-308

PAMY1_DICTH
ALPHA-AMYLASE 1

DICTYOGLOMUS THERMOPHILUM

507-534

PAMY2_DICTH
ALPHA-AMYLASE 2

DICTYOGLOMUS THERMOPHILUM

151-178
507-534

PAMY2_SALTY
CYTOPLASMIC ALPHA-

SALMONELLA TYPHIMURIUM

70-104

AMYLASE

PAMY3_DICTH
ALPHA-AMYLASE 3

DICTYOGLOMUS THERMOPHILUM

280-307

PAMYB_BACCI
BETA-AMYLASE PRECURSOR

BACILLUS CIRCULANS

61-88

PAMYB_BACPO
BETA-AMYLASE

BACILLUS POLYMYXA

60-87
266-293
1143-1184

PAMYB_CLOTU
BETA-AMYLASE, THERMO-

CLOSTRIDIUM THERMO-
269-296
378-405
459-486

PHILIC PRECURSOR

SULFUROGENES

PAMYG_CLOSP
GLUCOAMYLASE PRECURSOR

CLOSTRIDIUM SP
103-148
480-510

PAMYM_BACST
MALTOGENIC ALPHA-

BACILLUS STEAROTHERMOPHILUS

426-453

AMYLASE PRECURSOR

PAMYR_BACS8
RAW-STARCH-DIGESTING

BACILLUS SP
210-237
435-465
615-642

AMYLASE

PAMY_AERHY
ALPHA-AMYLASE

AEROMONAS HYDROPHILA

415-453

PRECURSOR

PAMY_ALTHA
ALPHA-AMYLASE

ALTEROMONAS HALOPLANKTIS

166-193

PRECURSOR

PAMY_BACAM
ALPHA-AMYLASE

BACILLUS AMYLOLIQUE-
102-136

PRECURSOR

FACIENS

PAMY_BACCI
ALPHA-AMYLASE

BACILLUS CIRCULANS

212-239
437-474

PRECURSOR

PAMY_BACME
ALPHA-AMYLASE

BACILLUS MEGATERIUM

61-88
441-482

PRECURSOR

PAMY_BACSU
ALPHA-AMYLASE

BACILLUS SUBTILIS

165-205
281-308

PRECURSOR

PAMY_BUTFI
ALPHA-AMYLASE

BUTYRIVIBRIO FIBRISOLVENS

377-418
546-573
579-606
795-822

PRECURSOR

PAMY_CLOAB
PUTATIVE ALPHA-AMYLASE

CLOSTRIDIUM ACETOBUTYLICUM

283-310

PAMY_CLOTU
ALPHA-AMYLASE

CLOSTRIDUM THERMO-
431-468
612-642

PRECURSOR

SULFUROGENES

PAMY_STRLM
ALPHA-AMYLASE

STREPTOMYCES LIMOSUS

173-200

PRECURSOR

PANFA_AZOVI
NITROGEN FIXATION

AZOTOBACTER VINELANDII

232-259

PROTEIN ANFA

PANFD_AZOVI
NITROGENASE IRON-IRON

AZOTOBACTER VINELANDII

95-122

PROTEIN ALPHA CHAIN

PANFK_AZOVI
NITROGENASE IRON-IRON

AZOTOBACTER VINELANDII

369-396

PROTEIN BETA CHAIN

PANGR_VIBAN
ANGR PROTEIN

VIBRIO ANGUILLARIUM

93-120
169-203

PAPCE_FREDI
PHYCOBILISOME 120 KD

FREMYELLA DIPLOSIPHON

51-78

LINKER POLYPEPTIDE

PAPCE_SYNP6
PHYCOBILISOME LINKER

SYNECHOCOCCUS SP
37-64
585-615

POLYPEPTIDE

PAPCE_SYNY4
PHYCOBILISOME 120 KD

SYNECHOCYSTIS SP
52-79

LINKER POLYPEPTIDE

PAPHC_SALTY
ALKYL HYDROPEROXIDE

SALMONELLA TYPHIMURIUM

62-89

REDUCTASE C22 PROTEIN

PAPI_ACHLY
PROTEASE I PRECURSOR

ACHROMOBACTER LYTICUS

478-505

PAPPC_ECOLI
PROBABLE CYTOCHROME

ESCHERICHIA COLI

118-148

OXIDASE SUBUNIT I

PAPRD_PSEAE
ALKALINE PROTEASE SECRE-

PSEUDOMONAS AERUGINOSA

416-450

TION PROTEIN APRD

PAPRE_PSEAE
ALKALINE PROTEASE SECRE-

PSEUDOMONAS AERUGINOSA

133-193
208-235
247-277

TION PROTEIN APRE

PAPT_ECOLI
ADENINE PHOSPHORIBOSYL-

ESCHERICHIA COLI

121-148

TRANSFERASE

PAPU_THEET
ALPHA-AMYLASE-

THERMOANAEROBACTER

276-303
347-374
936-982
987-1014
1210-1254
1381-1408

PULLULANASE PRECURSOR

ETHANOLICUS

PARCA_MYCAR
ARGININE DEIMINASE

MYCOPLASMA ARGININI

60-87
218-245

PARCB_ECOLI
AEROBIC RESPIRATION

ESCHERICHIA COLI

102-150
302-329
399-426

CONTROL PROTEIN ARCB

PARCD_PSEAE
PROBABLE ARGININE/

PSEUDOMONAS AERUGINOSA

274-301
386-420

ORNITHINE ANTIPORTER

PARGA_ECOLI
AMINO-ACID ACETYL-

ESCHERICHIA COLI

82-109

TRANSFERASE

PARGT_ECOLI
LYS-ARG-ORN-BINDING

ESCHERICHIA COLI

84-111

PROTEIN (LAO) PRECURSO

PAROA_STAAU
PHOSPHOSHIKIMATE 1-

STAPHYLOCOCCUS AUREUS

86-120

CARBOXYVINYLTRANSFER

PAROC_ECOLI
CHORISMATE SYNTHASE

ESCHERICHIA COLI

68-95

PAROC_SALTI
CHORISMATE SYNTHASE

SALMONELLA TYPHI

68-95

PAROD_BACSU
DEHYDROQUINATE

BACILLUS SUBTILIS

49-76

DEHYDRATASE

PAROK_ECOLI
SHIKIMATE KINASE I

ESCHERICHIA COLI

84-118

PARP4_STRPY
IGA RECEPTOR PRECURSOR

STREPTOCOCCUS PYOGENES

12-46
127-157
266-324

PARP_ECOLI
ARP PROTEIN

ESCHERICHIA COLI

255-282

PARSA_ECOLI
ARSENICAL PUMP-DRIVING

ESCHERICHIA COLI

201-238

ATPASE

PARSB_ECOLI
ARSENICAL PUMP

ESCHERICHIA COLI

291-318

MEMBRANE PROTEIN

PARSB_STAAU
ARSENICAL PUMP

STAPHYLOCOCCUS AUREUS

27-71
295-322

MEMBRANE PROTEIN

PARSB_STAXY
ARSENICAL PUMP

STAPHYLOCOCCUS XYLOSUS

27-71
295-322

MEMBRANE PROTEIN

PARSR_STAAU
ARSENICAL RESIST OPERON

STAPHYLOCOCCUS AUREUS

56-93

REPRESSOR PROTEIN

PARTA_ECOLI
ARTA PROTEIN

ESCHERICHIA COLI

3-30

PARTI_ECOLI
TRANSPORT SYSTEM

ESCHERICHIA COLI

105-132
213-240

PROTEIN ARTI

PARTP_ECOLI
TRANSPORT SYSTEM

ESCHERICHIA COLI

176-206

PROTEIN ARTP

PASA1_ENTFA
AGGREGATION SUBSTANCE

ENTEROCOCCUS FAECALIS

195-254
478-505
799-826
859-896

PRECURSOR

PASNA_ECOLI
ASPARTATE-AMMONIA

ESCHERICHIA COLI

127-158

LIGASE

PASNB_ECOLI
ASPARAGINE SYNTHETASE B

ESCHERICHIA COLI

450-477

PASNC_ECOLI
REGULATORY PROTEIN ASNC

ESCHERICHIA COLI

116-143

PASPA_BACSU
ASPARTATE AMMONIA-

BACILLUS SUBTILIS

7-34

LYASE

PASPA_ECOLI
ASPARTATE AMMONIA-

ESCHERICHIA COLI

204-236

LYASE

PASPA_SERMA
ASPARTATE AMMONIA-

SERRATIA MARCESCENS

204-231

LYASE

PASPG_BACLI
L-ASPARAGINASE

BACILLUS LICHENIFORMIS

252-288

PASPG_ERWCH
L-ASPARAGINASE

ERWINIA CHRYSANTHEMI

188-218

PRECURSOR

PASPQ_ACIGL
GLUTAMINASE-

ACINETOBACTER GLUTA-
46-80

ASPARAGINASE

MINASIFICANS

PASSY_ECOLI
ARGININOSUCCINATE

ESCHERICHIA COLI

354-381

SYNTHASE

PASSY_METBA
ARGININOSUCCINATE

METHANOSARCINA BARKERI

287-314

SYNTHASE

PATBP_STAAU
POTENTIAL ATP-BINDING

STAPHYLOCOCCUS AUREUS

41-68
201-245

PROTEIN

PATKA_ENTFA
POTASSIUM/COOPER-

ENTEROCOCCUS FAECALIS

41-80
347-374

TRANSPORTING ATPASE A

PATKB_ENTFA
POTASSIUM/COOPER-

ENTEROCOCCUS FAECALIS

280-310
450-477

TRANSPORTING ATAPSE B

PATMB_SALTY
MG (2+) TRANSPORT ATPASE,

SALMONELLA TYPHIMURIUM

503-530

P-TYPE

PATP6_SYNP6
ATP SYNTHASE A CHAIN

SYNECHOCOCCUS SP
233-260

PATP6_VIBAL
ATP SYNTHASE A CHAIN

VIBRIO ALGINOLYTICUS

11-38

PATPA_ANASP
ATP SYNTHASE ALPHA

ANABAENA SP
9-36
96-130

CHAIN

PATPA_BACME
ATP SYNTHASE ALPHA

BACILLUS MEGATERIUM

4-36
453-480

CHAIN

PATPA_ECOLI
ATP SYNTHASE ALPHA

ESCHERICHIA COLI

486-513

CHAIN

PATPA_ENTFA
ATP SYNTHASE ALPHA

ENTEROCOCCUS FAECALIS

4-36
484-518

CHAIN

PATPA_MYCGA
ATP SYNTHASE ALPHA

MYCOPLASMA GALLISEPTICUM

362-409

CHAIN

PATPA_PROMO
ATP SYNTHASE ALPHA

PROPIONIGENIUM MODESTUM

6-36

CHAIN

PATPA_RHORU
ATP SYNTHASE ALPHA

RHODOSPIRILLUM RUBRUM

165-200
459-486

CHAIN

PATPA_SULAC
ATPASE ALPHA CHAIN

SULFOLOBUS ACIDOCALDARIUS

318-345
562-589

PATPA_SYNP1
ATP SYNTHASE ALPHA

SYNECHOCOCCUS SP
7-44

CHAIN

PATPA_SYNP6
ATP SYNTHASE ALPHA

SYNECHOCOCCUS SP
8-45
362-389

CHAIN

PATPA_SYNY3
ATP SYNTHASE ALPHA

SYNECHOCYSTIS SP
8-37
454-500

CHAIN

PATPA_THEP3
ATP SYNTHASE ALPHA

THERMOPHILIC BACTERIUM PS-3
9-36

CHAIN

PATPA_VIBAL
ATP SYNTHASE ALPHA

VIBRIO ALGINOLYTICUS

464-513

CHAIN

PATPB_ANASP
ATP SYNTHASE BETA CHAIN

ANABAENA SP
280-307
370-397

PATPB_BACFI
ATP SYNTHASE BETA CHAIN

BACILLUS FIRMUS

163-190
358-385

PATPB_MYCGA
ATP SYNTHASE BETA CHAIN

MYCOPLASMA GALLISEPTICUM

375-402

PATPB_RHORU
ATP SYNTHASE BETA CHAIN

RHODOSPIRILLUM RUBRUM

359-386

PATPB_SULAC
ATPASE BETA CHAIN

SULFOLOBUS ACIDOCALDARIUS

164-191

PATPB_SYNP1
ATP SYNTHASE BETA CHAIN

SYNECHOCOCCUS SP
381-408

PATPB_SYNP6
ATP SYNTHASE BETA CHAIN

SYNECHOCOCCUS SP
291-318
381-408

PATPB_SYNY3
ATP SYNTHASE BETA CHAIN

SYNECHOCYSTIS SP
381-408

PATPD_ANASP
ATP SYNTHASE DELTA CHAIN

ANABAENA SP
109-139
143-170

PATPD_BACFI
ATP SYNTHASE DELTA CHAIN

BACILLUS FIRMUS

63-90
133-160

PATPD_BACME
ATP SYNTHASE DELTA CHAIN

BACILLUS MEGATERIUM

132-159

PATPD_ENTFA
ATP SYNTHASE DELTA CHAIN

ENTEROCOCCUS FAECALIS

14-41

PATPD_PROMO
ATP SYNTHASE DELTA CHAIN

PROPIONIGENIUM MODESTUM

79-116
118-149

PATPD_RHOBL
ATP SYNTHASE DELTA CHAIN

RHODOPSEUDOMONAS BLASTICA

125-152

PATPD_RHORU
ATP SYNTHASE DELTA CHAIN

RHODOSPIRILLUM RUBRUM

119-146

PATPD_SYNP1
ATP SYNTHASE DELTA CHAIN

SYNECHOCOCCUS SP
100-127

PATPD_SYNY3
ATP SYNTHASE DELTA CHAIN

SYNECHOCYSTIS SP
113-147

PATPD_VIBAL
ATP SYNTHASE DELTA CHAIN

VIBRIO ALGINOLYTICUS

110-137

PATPE_BACFI
ATP SYNTHASE EPSILON

BACILLUS FIRMUS

53-80

CHAIN

PATPE_MYCGA
ATP SYNTHASE EPSILON

MYCOPLASMA GALLISEPTICUM

99-126

CHAIN

PATPE_PROMO
ATP SYNTHASE EPSILON

PROPIONIGENIUM MODESTUM

100-127

CHAIN

PATPE_SYNP1
ATP SYNTHASE EPSILON

SYNECHOCOCCUS SP
72-106

CHAIN

PATPF_ANASP
ATP SYNTHASE B CHAIN

ANABAENA SP
17-44
51-78
137-164

PATPF_BACFI
ATP SYNTHASE B CHAIN

BACILLUS FIRMUS

110-151

PATPF_BACME
ATP SYNTHASE B CHAIN

BACILLUS MEGATERIUM

55-85
122-170

PATPF_MYCGA
ATP SYNTHASE B CHAIN

MYCOPLASMA GALLISEPTICUM

82-135
170-197

PATPF_SNYP1
ATP SYNTHASE B CHAIN

SYNECHOCOCCUS SP
15-49
111-159

PATPF_SYNP6
ATP SYNTHASE B CHAIN

SYNECHOCOCCUS SP
12-39
128-155

PATPF_THEP3
ATP SYNTHASE B CHAIN

THERMOPHILIC BACTERIUM PS-3
50-77

PRECURSOR

PATPG_ANASP
ATP SYNTHASE GAMMA

ANABAENA SP
276-310

CHAIN

PATPG_ECOLI
ATP SYNTHASE GAMMA

ESCHERICHIA COLI

253-283

CHAIN

PATPG_MYCGA
ATP SYNTHASE GAMMA

MYCOPLASMA GALLISEPTICUM

28-62
92-140

CHAIN

PATPG_RHORU
ATP SYNTHASE GAMMA

RHODOSPIRILLUM RUBRUM

270-297

CHAIN

PATPG_SYNP1
ATP SYNTHASE GAMMA

SYNECHOCOCCUS SP
280-307

CHAIN

PATPG_SYNY3
ATP SYNTHASE GAMMA

SYNECHOCYSTIS SP
96-126
280-307

CHAIN

PATP1_MYCGA
ATP SYNTHASE PROTEIN I

MYCOPLASMA GALLISPETICUM

133-167

PATPX_ANASP
ATP SYNTHASE B′ CHAIN

ANABAENA SP
129-156

PATPX_BACFI
ATP SYNTHASE BETA CHAIN

BACILLUS FIRMUS

162-189
356-383

PATPX_RHORU
ATP SYNTHASE B′ CHAIN

RHODOSPIRILLUM RUBRUM

40-74

PATPX_SYNP1
ATP SYNTHASE B′ CHAIN

SYNECHOCOCCUS SP
57-110
128-155

PATPX_SYNP6
ATP SYNTHASE B′ CHAIN

SYNECHOCOCCUS SP
70-100

PATPX_SYNY3
ATP SYNTHASE B′ CHAIN

SYNECHOCYSTIS SP
108-135

PATPZ_BACME
ATP SYNTHASE PROTEIN I

BACILLUS MEGATERIUM

14-62

PATPZ_SYNP1
ATP SYNTHASE PROTEIN I

SYNECHOCOCCUS SP
90-131

PAVRB_PSESG
AVIRULENCE B PROTEIN

PSEUDOMONAS SYRINGAE

184-211
233-260

PBA71_EUBSP
7-ALPHA-HYDROXYSTEROID

EUBACTERIUM SP
26-53

DEHYDROGENASE

PBA72_EUBSP
7-ALPHA-HYDROXYSTEROID

EUBACTERIUM SP
26-53

DEHYDROGENASE

PBACH_HALHM
HALORHODOPSIN

HALOBACTERIUM HALOBIUM

145-179

PBACH_HALSG
HALORHODOPSIN

HALOBACTERIUM SP
180-214

PRECURSOR

PBAES_ECOLI
SENSOR PROTEIN BAES

ESCHERICHIA COLI

152-186

PBAG_STRAG
IGA FC RECEPTOR

STREPTOCOCCUS AGALACTIAE

92-119
138-204
267-306
343-385
487-524
562-589
1014-1041

PRECURSOR

PBAHG_VITSP
BACTERIAL HEMOGLOBIN

VITREOSCILLA SP
119-146

PBAIC_EUBSP
BILE ACID-INDUCIBLE

EUBACTERIUM SP
423-450

OPERON PROTEIN C

PBARA_ECOLI
SENSOR PROTEIN BARA

ESCHERICHIA COLI

334-361
425-455

PBASS_ECOLI
SENSOR PROTEIN BASS

ESCHERICHIA COLI

122-156

PBAT_HALHA
PUTATIVE BACTERIO-OPSIN

HALOBACTERIUM HALOBIUM

408-442

ACTIVATOR

PBAX_ECOLI
BAX PROTEIN

ESCHERICHIA COLI

21-64

PBCCP_ECOLI
BIOTIN CARBOXYL CARRIER

ESCHERICHIA COLI

6-35

PROTEIN

PBCHH_RHOCA
METHYLTRANSFERASE

RHODOBACTER CAPSULATUS

1000-1032

PBCHN_RHOCA
PROTOCHLOROPHYLLIDE

RHODOBACTER CAPSULATUS

249-276

REDUCTASE 46 KD CHAIN

PBCN5_CLOPE
BACTERIOCIN BCN5

CLOSTRIDIUM PERFRINGENS

72-99
585-646

PBCPA_PROAE
BACTERIOCHLOROPHYLL A

PROSTHECOCHLORIS AESTUARII

63-93

PROTEIN

PBCSC_ACEXY
CELLULOSE SYNTHASE

ACETOBACTER XYLINUM

131-158
1055-1082

OPERON C PROTEIN

PBCSD_ACEXY
CELLULOSE SYNTHASE

ACETOBACTER XYLINUM

10-37

OPERON D PROTEIN

PBENA_ACICA
BENZOATE 1,2-DIOXYGENASE

ACINETOBACTER CALCOACETICUS

190-217

ALPHA SUBUNIT

PBETT_ECOLI
HIGH AFFINITY CHOLINE

ESCHERICHIA COLI

243-270

TRANSPORT PROTEIN

PBEXA_HAEIN
BEXA PROTEIN

HAEMOPHILUS INFLUENZAE

23-50

PBEXC_HAEIN
BEXC PROTEIN

HAEMOPHILUS INFLUENZAE

157-184
226-253

PBEXD_HAEIN
BEXD PROTEIN

HAEMOPHILUS INFLUENZAE

205-239

PBFR_NITWI
BACTERIOFERRITIN

NITROBACTER WINOGRADSKYI

8-35

PBGA2_ECOLI
EVOLVED BETA-GALACTO-

ESCHERICHIA COLI

955-985

SIDASE ALPHA-SUBUNIT

PBGAL_BACST
BETA-GALACTOSIDASE

BACILLUS STEAROTHERMOPHILUS

599-633

PBGAL_CLOAB
BETA-GALACTOSIDASE

CLOSTRIDIUM ACETOBUTYLICUM

824-851

PBGAL_CLOTU
BETA-GALACTOSIDASE

CLOSTRIDIUM THERMO-
161-191

SULFUROGENES

PBGAL_KLEPN
BETA-GALACTOSIDASE

KLEBSIELLA PNEUMONIAE

245-272

PBGAL_LACDE
BETA-GALACTOSIDASE

LACTOBACILLUS DELBRUECKII

305-332

PBGAL_STRTR
BETA-GALACTOSIDASE

STREPTOCOCCUS THERMOPHILUS

188-215

PBGAL_SULSO
BETA-GALACTOSIDASE

SULFOLOBUS SOLFATARICUS

59-86
179-206

PBGAM_LEULA
BETA-GALACTOSIDASE

LEUCONOSTOC LACTIS

129-156

SMALL SUBUNIT

PBGAM_SULSO
BETA-GALACTOSIDASE

SULFOLOBUS SOLFATARICUS

106-140

PBGLA_CLOTM
BETA-GLUCOSIDASE A

CLOSTRIDIUM THERMOCELLUM

353-380
418-445

PBGLB_CLOTM
THERMOSTABLE BETA-

CLOSTRIDIUM THERMOCELLUM

259-286
375-409
554-581
631-665

GLUCOSIDASE B

PBGLR_ECOLI
BETA-GLUCURONIDASE

ESCHERICHIA COLI

464-494
536-563

PBGLS_AGRSP
BETA-GLUCOSIDASE

AGROBACTERIUM SP
421-448

PBGLS_BUTFI
BETA-GLUCOSIDASE A

BUTYRIVIBRIO FIBRISOLVENS

85-112
435-462
692-719
738-765

PBIN3_STAAU
POTENTIAL DNA-INVERTASE

STAPHYLOCOCCUS AUREUS

60-87

BIN3

PBINL_STAAU
TRANSPOSON TN552

STAPHYLOCOCCUS AUREUS

163-197

RESOLVASE

PBINR_STAAU
DNA-INVERTASE BINR

STAPHYLOCOCCUS AUREUS

163-190

PGIOA_BACSH
AMINOTRANSFERASE

BACILLUS SPHAERICUS

33-60

PBIOB_BACSH
BIOTIN SYNTHETASE

BACILLUS SPHAERICUS

145-172

PBIOB_ECOLI
BIOTIN SYNTHETASE

ESCHERICHIA COLI

130-157

PBIOD_BACSH
DETHIOBIOTIN SYNTHASE

BACILLUS SPHAERICUS

144-171

PBLA1_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

91-118
275-305

PRECURSOR, TYPE I

PBLA1_HAEIN
BETA-LACTAMASE ROB-1

HAEMOPHILUS INFLUENZAE

152-179
204-231

PRECURSOR

PBLA2_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

18-67
201-228

PRECURSOR, TYPE II

PBLA2_BACSP
BETA-LACTAMASE

BACILLUS SP
18-67

PRECURSOR, TYPE II

PBLA3_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

35-83
95-129

PRECURSOR, TYPE III

PBLA4_PSEAE
BETA-LACTAMASE PSE-4

PSEUDOMONAS AERUGINOSA

19-50

PRECURSOR

PBLAB_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

20-66
200-227

PRECURSOR, TYPE II

PBLAB_BACFR
BETA-LACTAMASE

BACTEROIDES FRAGILIS

22-49

PRECURSOR, TYPE II

PBLAC_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

93-120
276-303

PRECURSOR, TYPE I

PBLAC_BACLI
BETA-LACTAMASE

BACILLUS LICHENIFORMIS

47-74
86-115

PRECURSOR

PBLAC_PROMI
BETA-LACTAMASE

PROTEUS MIRABILIS

191-221

PRECURSOR

PBLAC_PROVU
BETA-LACTAMASE

PROTEUS VULGARIS

4-38
240-267

PBLAC_STRAL
BETA-LACTAMASE

STREPTOMYCES ALBUS G
43-70

PRECURSOR

PBLAD_KLEPN
BETA-LACTAMASE

KLEBSIELLA PNEUMONIAE

121-148

PRECURSOR

PBLAI_STAAU
PENICILLINASE REPRESSOR

STAPHYLOCOCCUS AUREUS

19-74
99-126

PBLAO_ECOLI
BETA-LACTAMASE

ESCHERICHIA COLI

118-166
235-262

PRECURSOR

PBLAP_ECOLI
BETA-LACTAMASE PSE-2

ESCHERICHIA COLI

155-196

PRECURSOR

PBLAR_BACLI
REGULATORY PROTEIN

BACILLUS LICHENIFORMIS

129-156
515-552

BLAR1

PBLAR_STAAU
REGULATORY PROTEIN

STAPHYLOCOCCUS AUREUS

87-114
122-161
234-261
281-312
503-539

BLAR1

PBMP_TREPA
BASIC MEMBRANE PROTEIN

TREPONEMA PALLIDUM

312-346

PRECURSOR

PBMR_BACSU
MULTIDRUG RESISTANCE

BACILLUS SUBTILIS

277-304

PROTEIN

PBNZA_PSEPU
BENZENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

36-63

ALPHA SUBUNIT

PBNZB_PSEPU
BENZENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

119-153

BETA SUBUNIT

PBNZD_PSEPU
P4 SUBUNIT

PSEUDOMONAS PUTIDA

179-213

PBPS2_DESAM
BPS2 PROTEIN

DESULFUROLOBUS AMBIVALENS

157-237
242-290
311-355
391-425
543-573

PBRAB_PSEAE
CARRIER PROTEIN

PSEUDOMONAS AERUGINOSA

260-287
313-340

PBRAE_PSEAE
TRANSPORT PROTEIN BRAE

PSEUDOMONAS AERUGINOSA

254-281

PBRAG_PSEAE
BRAG PROTEIN

PSEUDOMONAS AERUGINOSA

7-34

PBTUB_ECOLI
VITAMIN B12 RECEPTOR

ESCHERICHIA COLI

439-466

PRECURSOR

PBTUE_ECOLI
VITAMIN B12 TRANSPORT

ESCHERICHIA COLI

6-33

PERIPLASMIC PROTEIN

PBVGA_BORPE
TRANSCRIPTION REGULATOR

BORDETELLA PERTUSSIS

174-205

BVGA

BORDETELLA BRONCHISEPTICA

PBVGB_BORPE
PERIPLASMIC PROTEIN BVGB

BORDETELLA PERTUSSIS

116-143

PRECURSOR

PBVGC_BORPE
SENSOR PROTEIN BVGC

BORDETELLA PERTUSSIS

39-66
202-229

PBVGS_BORBR
VIRULENCE BVGS PROTEIN

BORDETELLA BRONCHISEPTICA

113-143
341-368
501-531

PRECURSOR

PBXA_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

313-340
686-729
733-762
815-842
851-893
968-995
1159-1207

TYPE A PRECURSOR

PBXB_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

666-693
720-762
802-832
853-890
1004-1031
1058-1089

TYPE B PRECURSOR

PBXC1_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

86-113
314-341
730-773
798-825
850-892

TYPE C1 PRECURSOR

PBXD_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

473-500
526-576
727-770
804-831
847-892
906-963
1060-1087

TYPE D PRECURSOR

PBXE_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

254-291
350-381
704-753
773-811
890-914
992-1019
1115-1149

TYPE E PRECURSOR

PBXE_CLOBU
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

254-291
350-381
704-753
774-808
890-917
992-1019
1115-1149

TYPE E PRECURSOR

PBXF_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

669-710
735-772
892-919
1013-1040
1095-1122
1183-1210

TYPE F PRECURSOR

PC550_MICAE
CYTOCHROME C550

MICROCYSTIS AERUGINOSA

3-30

PCADA_BACFI
PROBABLE CADMIUM-

BACILLUS FIRMUS

30-57
100-131
165-192
276-306
533-567

TRANSPORTING ATPASE

PCADA_STAAU
PROBABLE CADMIUM-

STAPHYLOCOCCUS AUREUS

282-309
536-570

TRANSPORTING ATPASE

PCADC_ECOLI
TRANSCRIPTIONAL

ESCHERICHIA COLI

54-85
412-443

ACTIVATOR CADC

PCAFA_YERPE
F1 CAPSULE ANCHORING

YERSINIA PESTIS

203-240
416-457
530-557
619-646

PROTEIN PRECURSOR

PCAPA_BACAN
CAPA PROTEIN

BACILLUS ANTHRACIS

108-138

PCAPB_BACAN
CAPB PROTEIN

BACILLUS ANTHRACIS

36-70

PCAPP_ANANI
PHOSPHOENOLPYRUVATE

ANACYSTIS NIDULANS

248-293

CARBOXYLASE

PCAPP_ANASP
PHOSPHOENOLPYRUVATE

ANABAENA SP
98-125
157-184
687-728

CARBOXYLASE

PCAPP_CORGL
PHOSPHOENOLPYRUVATE

CORYNEBACTERIUM GLUTMICUM

15-42

CARBOXYLASE

PCAPP_ECOLI
PHOSPHOENOLPYRUVATE

ESCHERICHIA COLI

35-62

CARBOXYLASE

PCARA_BACSU
CARBAMOYL-PHOSPHATE

BACILLUS SUBTILIS

274-319

SYNTHASE

PCARB_BACSU
CARBAMOYL-PHOSPHATE

BACILLUS SUBTILIS

790-831

SYNTHASE

PCARB_ECOLI
CARBAMOYL-PHOSPHATE

ESCHERICHIA COLI

454-481

SYNTHASE LARGE CHAI

PCAT2_STAAU
CHLORAMPHENICOL

STAPHYLOCOCCUS AUREUS

7-34
87-114

ACETYLTRANSFERASE

PCAT3_STAAU
CHLORAMPHENICOL

STAPHYLOCOCCUS AUREUS

7-34
87-114

ACETYLTRANSFERASE

PCATA_ACICA
CATECHOL 1,2-DIOXYGENASE

ACINETOBACTER CALCOACETICUS

31-65

PCATA_BACST
PEROXIDASE/CATALASE

BACILLUS STEAROTHERMOPHILUS

440-470

PCATA_ECOLI
CATALASE HPI

ESCHERICHIA COLI

579-606

PCATA_MICLU
CATALASE

MICROCOCCUS LUTEUS

453-480

PCATA_SALTY
CATALASE HPI

SALMONELLA TYPHIMURIUM

515-542
580-607

PCATE_ECOLI
CATALASE HPII

ESCHERICHIA COLI

175-202

PCAT_CAMCO
CHLORAMPHENICOL

CAMPYLOBACTER COLI

84-111

ACETYLTRANSFERASE

PCAT_CLOBU
CHLORAMPHENICOL

CLOSTRIDIUM BUTYRICUM

88-115

ACETYLTRANSFERASE

PCAT_ECOLI
CHLORAMPHENICOL

ESCHERICHIA COLI

92-119

ACETYLTRANSFERASE

PCAT_PROMI
CHLORAMPHENICOL

PROTEUS MIRABILIS

92-119

ACETYLTRANSFERASE

PCAT_STAIN
CHLORAMPHENICOL

STAPHYLOCOCCUS INTERMEDIUS

7-34
87-114

ACETYLTRANSFERASE

PCAT_STRAG
CHLORAMPHENICOL

STREPTOCOCCUS AGALACTIAE

7-34
87-114

ACETYLTRANSFERASE

PCBHE_COXBU
CBHE PROTEIN

COXIELLA BURNETII

209-236

PCBPT_THEVU
CARBOXYPEPTIDASE T

THERMOACTINOMYCES VULGARIS

48-75

PRECURSOR

PCCA_ECOLI
TRNA NUCLEOTIDYL-

ESCHERICHIA COLI

376-403

TRANSFERASE

PCCMK_SYNP7
CO2 CONC MECH PROTEIN

SYNECHOCOCCUS SP
29-56

CCMK

PCCMM_SYNP7
CO2 CONC MECH PROTEIN

SYNECHOCOCCUS SP
212-256
331-372
445-486

CCMM

PCDAS_THEET
CYCLOMALTODEXTRINASE

THERMOANAEROBACTER

305-332

ETHANOLICUS

PCDG1_BACMA
CYCLOMALTODEXT

BACILLUS MACERANS

439-466
616-643

GLUCANOTRANS PRECURSOR

PCDG2_BACMA
CYCLOMALTODEXT

BACILLUS MACERANS

210-251
436-466
615-642

GLUCANOTRANS PRECURSOR

PCDGT_BACCI
CYCLOMALTODEXT

BACILLUS CIRCULANS

217-244
442-472
594-651

GLUCANOTRANS PRECURSOR

PCDGT_BACLI
CYCLOMALTODEXT

BACILLUS LICHENIFORMIS

217-244
442-472
594-647

GLUCANOTRANS PRECURSOR

PCDGT_BACOH
CYCLOMALTODEXT

BACILLUS OHBENSIS

430-471

GLUCANOTRANS PRECURSOR

PCDGT_BAC50
CYCLOMALTODEXT

BACILLUS SP
210-237
435-462
615-642

GLUCANOTRANS PRECURSOR

PCDGT_BAC52
CYCLOMALTODEXT

BACILLUS SP
409-471

GLUCANOTRANS PRECURSOR

PCDGT_BAC53
CYCLOMALTODEXT

BACILLUS SP
210-237
435-462
614-641

GLUCANOTRANS PRECURSOR

PCDGT_BACSP
CYCLOMALTODEXT

BACILLUS SP
210-237
435-465
615-642

GLUCANOTRANS PRECURSOR

PCDGT_BACSS
CYCLOMALTODEXT

BACILLUS SP
217-244
442-472
594-651

GLUCANOTRANS PRECURSOR

PCDGT_BACST
CYCLOMALTODEXT

BACILLUS STEAROTHERMOPHILUS

586-646

GLUCANOTRANS PRECURSOR

PCDGT_KLEPN
CYCLOMALTODEXT

KLEBSIELLA PNEUMONIAE

212-239

GLUCANOTRANS PRECURSOR

PCEA1_ECOLI
COLICIN E1 PROTEIN

ESCHERICHIA COLI

44-71
285-326

PCEA1_SHISO
COLICIN E1* PROTEIN

SHIGELLA SONNEI

44-71
284-325
413-440

PCEA2_ECOLI
COLICIN E2

ESCHERICHIA COLI

334-368

PCEA3_ECOLI
COLICIN E3

ESCHERICHIA COLI

334-368

PCEA6_ECOLI
COLICIN E6

ESCHERICHIA COLI

334-368

PCEAB_ECOLI
COLICIN B

ESCHERICHIA COLI

283-341

PCEAD_ECOLI
COLICIN D

ESCHERICHIA COLI

284-311

PCEAM_ECOLI
COLICIN M

ESCHERICHIA COLI

178-227

PCEAN_ECOLI
COLICIN N

ESCHERICHIA COLI

119-146
173-200

PCEA_CITFR
COLICIN A

CITROBACTER FREUNDII

228-258

PCEFD_STRCL
ISOPENICILLIN N EPIMERASE

STREPTOMYCES CLAVULIGERUS

370-397

PCEIA_ECOLI
COLICIN IA PROTEIN

ESCHERICHIA COLI

68-95
255-282
378-412
415-452

PCEIB_ECOLI
COLICIN IB PROTEIN

ESCHERICHIA COLI

68-95
255-282
378-412
415-452

PCELA_ACEXY
UTP URIDYLYLTRANSFERASE

ACETOBACTER XYLINUM

59-89

PCELA_ECOLI
PROTEIN CELA

ESCHERICHIA COLI

76-103

PCFAA_ECOLI
CFA/1 FIMBRIAL SUBUNIT A

ESCHERICHIA COLI

27-58

PRECURSOR

PCFAC_ECOLI
CFA/1 FIMBRIAL SUBUNIT C

ESCHERICHIA COLI

138-187
388-456
561-595

PRECURSOR

PCFAD_ECOLI
CFA/1 FIMBRIAL SUBUNIT D

ESCHERICHIA COLI

133-160

PCFAE_ECOLI
CFA/1 FIMBRIAL SUBUNIT E

ESCHERICHIA COLI

180-207
244-271

PCH10_ACYPS
10 KD CHAPERONIN

ACYRTHOSIPHON PISUM

57-95

SYMBIOTIC BACTERIU

PCH10_BACSU
10 KD CHAPERONIN

BACILLUS SUBTILIS

66-93

PCH10_CHLTR
10 KD CHAPERONIN

CHLAMYDIA TRACHOMATIS

64-91

PCH10_ECOLI
10 KD CHAPERONIN

ESCHERICHIA COLI

57-84

PCH10_HAEDU
10 KD CHAPERONIN

HAEMOPHILUS DUCREYI

68-95

PCH10_LEGMI
10 KD CHAPERONIN

LEGIONELLA MICDADEI

57-84

PCH10_RICTS
10 KD CHAPERONIN

RICKETTSIA TSUTSUGAMUSHI

65-92

PCH10_THEP3
10 KD CHAPERONIN

THERMOPHILIC BACTERIUM PS-3
66-93

PCH60_ACYPS
60 KD CHAPERONIN

ACYRTHOSIPHON PISUM

341-382

SYMBIOTIC BACTERIU

PCH60_AGRTU
60 KD CHAPERONIN

AGROBACTERIUM TUMEFACIENS

117-163
339-370
425-466

PCH60_AMOPS
60 KD CHAPERONIN

AMOEBA PROTEUS SYMBIOTIC

299-333

BACTERIUM

PCH60_BACSU
60 KD CHAPERONIN

BACILLUS SUBTILIS

298-332
337-364

PCH60_BORBU
60 KD CHAPERONIN

BORRELIA BURGODORFERI

125-163
299-368

PCH60_BRUAB
60 KD CHAPERONIN

BRUCELLA ABORTUS

117-144
339-366

PCH60_CHLPN
60 KD CHAPERONIN

CHLAMYDIA PNEUMONIAE

4-31

PCH60_CHLTR
60 KD CHAPERONIN

CHLAMYDIA TRACHOMATIS

4-31

PCH60_CHRVI
60 KD CHAPERONIN

CHROMATIUM VINOSUM

300-327

PCH60_CLOAB
60 KD CHAPERONIN

CLOSTRIDIUM ACETOBUTYLICUM

238-332
337-364
455-482

PCH60_CLOPE
60 KD CHAPERONIN

CLOSTRIDIUM PERFRINGENS

337-368
417-444

PCH60_COXBU
60 KD CHAPERONIN

COXIELLA BURNETII

300-327
348-382

PCH60_HAEDU
60 KD CHAPERONIN

HAEMOPHILUS DUCREYI

339-366
417-444

PCH60_LEGMI
60 KD CHAPERONIN

LEGIONELLA MICDADEI

299-333

PCH60_LEGPN
60 KD CHAPERONIN

LEGIONELLA PNEUMOPHILA

298-332
452-479

PCH60_MYCLE
60 KD CHAPERONIN

MYCOBACTERIUM LEPRAE

125-152
236-263
337-364

PCH60_MYCTU
60 KD CHAPERONIN

MYCOBACTERIUM TUBERCULOSIS

125-152
337-364

& BOVIS

PCH60_PSEAE
60 KD CHAPERONIN

PSEUDOMONAS AERUGINOSA

339-366

PCH60_RHILV
60 KD CHAPERONIN

RHIZOBIUM LEGUMINOSARUM

117-163
322-370
425-466

PCH60_RICTS
60 KD CHAPERONIN

RICKETTSIA TSUTSUGAMUSHI

103-130
293-336
360-394

PCH60_SYNP7
60 KD CHAPERONIN

SYNECHOCOCCUS SP
308-335
337-380

PCH60_SYNY3
60 KD CHAPERONIN

SYNECHOCYSTIS SP
338-365
455-489

PCH60_THEP3
60 KD CHAPERONIN

THERMOPHILIC BACTERIUM PS-3
337-364

PCH62_STRAL
60 KD CHAPERONIN 2

STREPTOMYCES ALBUS G
116-148
337-364

PCHB_VIBHA
N,N′-DIACETYLCHITOBIASE

VIBRIO HARVEYI

21-48
772-799

PRECURSOR

PCHEA_BACSU
CHEMOTAXIS PROTEIN CHEA

BACILLUS SUBTILIS

373-400
590-617

PCHEA_ECOLI
CHEMOTAXIS PROTEIN CHEA

ESCHERICHIA COLI

256-286

PCHEA_SALTY
CHEMOTAXIS PROTEIN CHEA

SALMONELLA TYPHIMURIUM

162-197

PCHER_BACSU
CHEMOTAXIS PROTEIN

BACILLUS SUBTILIS

124-151

METHYLTRANSFERASE

PCHEW_ECOLI
PURINE-BINDING CHEMO-

ESCHERICHIA COLI

68-115

TAXIS PROTEIN

PCHEW_SALTY
PURINE-BINDING CHEMO-

SALMONELLA TYPHIMURIUM

88-115

TAXIS PROTEIN

PCHEY_ECOLI
CHEMOTAXIS PROTEIN CHEY

ESCHERICHIA COLI

22-49

PCHEY_SALTY
CHEMOTAXIS PROTEIN CHEY

SALMONELLA TYPHIMURIUM

22-49

PCHI1_BACCI
CHITINASE A1 PRECURSOR

BACILLUS CIRCULANS

491-518
566-593

PCHIA_ALTSO
CHITINASE A PRECURSOR

ALTEROMONAS SP
345-372

PCHIA_SERMA
CHITINASE A PRECURSOR

SERRATIA MARCESCENS

346-373

PCHID_BACCI
CHITINASE D PRECURSOR

BACILLUS CIRCULANS

102-161
189-216

PCHIT_SACER
CHITINASE

SACCHAROPOLYSPORA ERYTHRAEA

92-119

PCHIT_STRPL
CHITINASE 63 PRECURSOR

STREPTOMYCES PLICATUS

250-284

PCHMU_BACSU
CHORISMATE MUTASE

BACILLUS SUBTILIS

3-37

PCHOD_BREST
CHOLESTEROL OXIDASE

BREVIBACTERIUM STEROLICUM

263-290

PRECURSOR

PCHTA_VIBCH
CHOLERA ENTEROTOXIN, A

VIBRIO CHOLERAE

79-106

CHAIN PRECURSOR

PCHVA_AGRTU
BETA-(1->2)GLUCAN EXPORT

AGROBACTERIUM TUMEFACIENS

4-31
181-208

PROTEIN

PCHVE_AGRTU
RECEPTOR PROTEIN CHVE

AGROBACTERIUM TUMEFACIENS

100-127

PRECURSOR

PCIRI_CITFR
CITROLYSIN PROTEIN I

CITROBACTER FREUNDII

435-462

PCIRA_ECOLI
COLICIN I RECEPTOR

ESCHERICHIA COLI

146-173

PRECURSOR

PCISA_BACSU
PUTATIVE DNA

BACILLUS SUBTILIS

378-405

RECOMBINASE

PCISY_ACIAN
CITRATE SYNTHASE

ACINETOBACTER ANITRATUM

143-170

PCISY_BACCO
CITRATE SYNTHASE

BACILLUS COAGULANS

24-51

PCITA_SALTY
CITRATE-PROTON SYMPORT

SALMONELLA TYPHIMURIUM

154-181

PCITN_KLEPN
CITRATE-SODIUM SYMPORT

KLEBSIELLA PNEUMONIAE

194-221

PCITN_SALDU
CITRATE-SODIUM SYMPORT

SALMONELLA DUBLIN

194-221

PCITN_SALPU
CITRATE-SODIUM SYMPORT

SALMONELLA PULLORUM

194-221

PCLCA_PSEPU
CHLOROCATECHOL 1,2-

PSEUDOMONAS PUTIDA

13-36

DIOXYGENASE

PCLD1_ECOLI
CHAIN LENGTH DETER-

ESCHERICHIA COLI

133-167

MINANT PROTEIN

PCLD2_ECOLI
CHAIN LENGTH DETER-

ESCHERICHIA COLI

178-212
250-277

MINANT PROTEIN

PCLD_SALTY
CHAIN LENGTH DETER-

SALMONELLA TYPHIMURIUM

96-127
151-212

MINANT PROTEIN

PCLOS_CLOHI
ALPHA-CLOSTRIPAIN

CLOSTRIDIUM HISTOLYTICUM

30-58
497-524

PRECURSOR

PCLPA_ECOLI
ATP-BINDING SUBUNIT CLPA

ESCHERICHIA COLI

655-695

PCLPA_RHOBL
CLPA HOMOLOG PROTEIN

RHODOPSEUDOMONAS BLASTICA

439-466

PCLPB_BACNO
CLPB HOMOLOG PROTEIN

BACTEROIDES NODOSUS

116-157
442-476
558-595

PCLPB_ECOLI
CLPB PROTEIN

ESCHERICHIA COLI

444-489
563-590

PCLPX_AZOVI
CLPX HOMOLOG PROTEIN

AZOTOBACTER VINELANDII

215-242
332-359

PCLPX_ECOLI
ATP-BINDING SUBUNIT CLPX

ESCHERICHIA COLI

255-282

PCN16_ECOLI
2′,3′-CYCLIC-NUC 2′-

ESCHERICHIA COLI

50-77

PHOSPHODIESTERASE

PRECURS

PCODA_ECOLI
CYTOSINE DEAMINASE

ESCHERICHIA COLI

102-129

PCOM1_BACSU
A COMPETENCE PROTEIN 1

BACILLUS SUBTILIS

108-135
186-213

PCOMQ_BACSU
COMPETENCE REGULATORY

BACILLUS SUBTILIS

154-239

PROTEIN

PCOP6_STAAU
COP-6 PROTEIN

STAPHYLOCOCCUS AUREUS

7-53

PCOPB_PSESM
COPPER RESISTANCE

PSEUDOMONAS SYRINGAE

140-167

PROTEIN B PRECURSOR

PCORA_ECOLI
MAGNESIUM/COBALT

ESCHERICHIA COLI

134-161

TRANSPORT PROTEIN CORA

PCORA_SALTY
MAGNESIUM/COBALT

SALMONELLA TYPHIMURIUM

134-161

TRANSPORT PROTEIN CORA

PCOTE_BACSU
SPORE COAT PROTEIN E

BACILLUS SUBTILIS

42-92

PCOX1_BRAJA
CYTOCHROME C OXIDASE

BRADYRHIZOBIUM JAPONICUM

380-407

POLYPEPTIDE I

PCOX1_PARDE
CYTOCHROME C OXIDASE

PARACOCCUS DENITRIFICANS

383-410

POLYPEPTIDE I

PCOX1_RHOSH
CYTOCHROME C OXIDASE

RHODOBACTER SPHAEROIDES

396-423

POLYPEPTIDE I

PCOXX_BACFI
OXIDASE ASSEMBLY FACTOR

BACILLUS FIRMUS

36-63

PCOXX_BACSU
OXIDASE ASSEMBLY FACTOR

BACILLUS SUBTILIS

49-76

PCPPB_NEIGO
CRYPTIC PLASMID PROTEIN B

NEISSERIA GONORRHOEAE

72-99
165-209

PCPSB_ECOLI
MANNOSE-1-PHOSPHATE

ESCHERICHIA COLI

309-336

GUANYLYLTRANSFERASE

PCPSB_SALTY
MANNOSE-1-PHOSPHATE

SALMONELLA TYPHIMURIUM

311-338

GUANYLYLTRANSFERASE

PCPXA_ECOLI
SENSOR PROTEIN CPXA

ESCHERICHIA COLI

254-281

PCPXG_STRSQ
CYTOCHROME P450 105C1

STREPTOMYCES SP
157-184

PCPXJ_SACER
6-DEOXYERYTHRONOLIDE B

SACCHAROPOLYSPORA ERYTHRAEA

233-260

(DEB) HYDROXYLASE

PCPXM_BACSU
CYTOCHROME P450 109

BACILLUS SUBTILIS

240-283

PCPXN_ANASP
PROBABLE CYTOCHROME

ANABAENA SP
98-125

P450

PCR27_BACTI
27 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

153-187

PCR27_BACTM
27 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

153-187

PCR41_BACSH
1.9 KD INSECTICIDAL TOXIN

BACILLUS SPHAERICUS

276-308

PCR42_BACSH
1.9 KD INSECTICIDAL TOXIN

BACILLUS SPHAERICUS

276-308

PCR43_BACSH
41.9 KD INSECTICIDAL TOXIN

BACILLUS SPHAERICUS

276-308

PCR70_BACTD
70 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

207-234
252-279
429-463

PCR70_BACTO
75 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

57-84
125-159
427-464

PCR70_BACTT
70 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

199-226
244-271
421-455

PCR71_BACTK
70 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

93-133
191-218
552-615

PCR72_BACTI
72 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

74-111
383-414

PCR72_BACTK
70 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

93-133
191-218
552-593

PCR77_BACTI
77 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

308-335
502-529

PCREC_ECOLI
SENSOR PROTEIN CREC

ESCHERICHIA COLI

103-130

PCRED_ECOLI
INNER MEMBRANE PROTEIN

ESCHERICHIA COLI

94-121

CRED

PCRP_ECOLI
CATABOLITE GENE ACTI-

ESCHERICHIA COLI &
26-53
127-154

VATOR

SHIGELLA FLEXNERI

PCRP_SALTY
CATABOLITE GENE ACTI-

SALMONELLA TYPHIMURIUM

26-53
127-154

VATOR

KLEBSIELLA AEROGENES

PCRTI_ERWHE
PHYTOENE DEHYDROGENASE

ERWINIA HERBICOLA

231-258

PCRTI_RHOCA
PHYTOENE DEHYDROGENASE

RHODOBACTER CAPSULATUS

389-416

PCRTJ_RHOCA
CRTJ PROTEIN

RHODOBACTER CAPSULATUS

133-160
334-361
431-458

PCRYS_BACTA
132 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

721-755
875-902

PCRYS_BACTB
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

730-771
865-892
1053-1080

PCRYS_BACTE
133 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

736-770
890-917

PCRYS_BACTI
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

218-252
701-728
775-802

PCRYS_BACTK
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

737-771
865-892
1053-1080

PCRYS_BACTS
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

736-770
890-917

PCRYT_BACTA
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

730-771
865-892
1053-1080

PCRYT_BACTE
134 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

745-779
899-926

PCRYT_BACTI
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

217-251
354-384
701-728
775-802

PCRYT_BACTK
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

737-771
865-892

PCRYU_BACTA
135 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

736-770
890-917

PCRYU_BACTI
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

217-251
700-727
774-801

PCRYU_BACTK
131 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

738-772
866-893
1054-1081

PCRYV_BACTA
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

737-771
865-892
1053-1080

PCRYV_BACTI
135 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

110-151
745-772
819-846

PCRYV_BACTK
133 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

736-770
890-917

PCRYW_BACTA
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

745-779

PCRYW_BACTK
133 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

608-659
662-696
892-919

PCRYX_BACTK
139 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

92-119
227-254
605-632
783-817
937-964

PCS32_ECOLI
CS3 PILI SYNTHESIS 63 KD

ESCHERICHIA COLI

42-69
226-253
290-317
344-378

PROTEIN

PCS33_ECOLI
CS3 PILI SYNTHESIS 48 KD

ESCHERICHIA COLI

90-117
154-181
208-242

PROTEIN

PCS34_ECOLI
CS3 PILI SYNTHESIS 33 KD

ESCHERICHIA COLI

20-47
74-108

PROTEIN

PCSG_HALHA
CELL SURFACE GLYCO-

HALOBACTERIUM HALOBIUM

256-283
584-611

PROTEIN PRECURSOR

PCSG_HALVO
CELL SURFACE GLYCO-

HALOBACTERIUM VOLCANII

143-170
237-271

PROTEIN PRECURSOR

PCSG_METFE
CELL SURFACE GLYCO-

METHANOTHERMUS FERVIDUS

59-107

PROTEIN PRECURSOR

PCSG_METSC
CELL SURFACE GLYCO-

METHANOTHERMUS SOCIABILIS

59-107

PROTEIN PRECURSOR

PCSOB_ECOLI
CS1 FIMBRIAL SUBUNIT B

ESCHERICHIA COLI

25-56

PRECURSOR

PCTFA_CLOAB
COA-TRANSFERASE SUBUNIT

CLOSTRIDIUM ACETOBUTYLICUM

118-145

A

PCTFB_CLOAB
COA-TRANSFERASE SUBUNIT

CLOSTRIDIUM ACETOBUTYLICUM

174-208

B

PCTRB_NEIME
INNER-MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

152-193

CTRB

PCTX_PSEAE
CYTOTOXIN PRECURSOR

PSEUDOMONAS AERUGINOSA

78-115
124-151
160-194
217-251

PCVAA_ECOLI
COLICIN V SECRETION

ESCHERICHIA COLI

104-138
163-219

PROTEIN CVAA

PCVAB_ECOLI
COLICIN V SECRETION

ESCHERICHIA COLI

151-178

PROTEIN CVAB

PCWPM_BACBR
MIDDLE CELL WALL PROTEIN

BACILLUS BREVIS

197-224
411-438
1010-1044

PRECURSOR

PCWPO_BACBR
OUTER CELL WALL PROTEIN

BACILLUS BREVIS

178-216
560-587
947-988

PRECURSOR

PCYAA_BORPE
ADENYLATE CYCLASE

BORDETELLA PERTUSSIS

48-75
632-659
962-996

PRECURSOR

PCYAA_YERIN
ADENYLATE CYCLASE

YERSINIA INTERMEDIA

343-387
593-620

PCYAB_BORPE
CYAB PROTEIN

BORDETELLA PERTUSSIS

541-568

PCYAD_BORPE
CYAD PROTEIN

BORDETELLA PERTUSSIS

178-212

PCYAE_BORPE
CYAE PROTEIN

BORDETELLA PERTUSSIS

313-340

PCYB_RHOCA
CYTOCHROME B

RHODOBACTER CAPSULATUS

38-65

PCYDD_ECOLI
TRANSPORT PROTEIN CYDD

ESCHERICHIA COLI

3-30
382-409

PCYF_NOSSP
APOCYTOCHROME F

NOSTOC SP
209-243

PRECURSOR

PCYMO_ACISP
CYCLOHEXANONE MONO-

ACINETOBACTER SP
439-473

OXYGENASE

PCYNT_SYNP7
CARBONIC ANHYDRASE

SYNECHOCOCCUS SP
170-200

PCYNX_ECOLI
CYNX PROTEIN

ESCHERICHIA COLI

53-80

PCYOB_ECOLI
CYTOCHROME O UBIQUINOL

ESCHERICHIA COLI

31-58

OXIDASE SUBUNIT 1

PCYPH_SYNP7
PEPTIDYL-PROLYL CIS-TRANS

SYNECHOCOCCUS SP
107-141

ISOMERASE

PCYSA_ECOLI
SULFATE PERMEASE A

ESCHERICHIA COLI

164-191

PROTEIN

PCYSB_ECOLI
CYS REGULON TRANS-

ESCHERICHIA COLI

3-30

CRIPTIONAL ACTIVATOR

PCYSB_SALTY
CYS REGULON TRANS-

SALMONELLA TYPHIMURIUM

3-30

CRIPTIONAL ACTIVATOR

PCYSE_ECOLI
SERINE ACETYL-

ESCHERICHIA COLI

164-191

TRANSFERASE

PCYSE_SALTY
SERINE ACETYL-

SALMONELLA TYPHIMURIUM

164-191

TRANSFERASE

PCYSG_ECOLI
SIROHEM SYNTHASE

ESCHERICHIA COLI

405-432

PCYSG_SALTY
SIROHEM SYNTHASE

SALMONELLA TYPHIMURIUM

405-432

PCYSN_ECOLI
SULFATE ADENYLATE

ESCHERICHIA COLI

64-91

TRANSFERASE SUBUNIT 1

PCYSW_ECOLI
SULFATE PERMEASE W

ESCHERICHIA COLI

201-228

PROTEIN

PCYSW_SYNP7
SULFATE PERMEASE W

SYNECHOCOCCUS SP
211-238

PROTEIN

PCZCB_ALCEU
CATION EFFLUX SYSTEM

ALCALIGENES EUTROPHUS

241-268
283-320
364-391

PROTEIN CZCB

PCZCD_ALCEU
CATION EFFLUX SYSTEM

ALCALIGENES EUTROPHUS

139-169

PROTEIN CZCD

PDACB_BACSU
PENICILLIN-BINDING

BACILLUS SUBTILIS

80-107

PROTEIN 5* PRECURSOR

PDADA_ECOLI
D-AMINO ACID DEHYDRO-

ESCHERICHIA COLI

127-154

GENASE

PDAGA_ALTHA
NA(+)-LINKED D-ALANINE

ALTEROMONAS HALOPLANKTIS

332-373

GLYCINE PERMEASE

PDAMX_ECOLI
DAMX PROTEIN

ESCHERICHIA COLI

68-95
349-380

PDAPA_ECOLI
DIHYDRODIPICOLINATE

ESCHERICHIA COLI

27-54
157-184

SYNTHASE

PDAT1_BACSU
DNA-PROTEIN-CYSTEINE

BACILLUS SUBTILIS

13-47

METHYLTRANSFERASE

PDBHA_ECOLI
DNA-BINDING PROTEIN HU-

ESCHERICHIA COLI

12-39

ALPHA

PDBH_CLOPA
DNA-BINDING PROTEIN HU

CLOSTRIDIUM PASTEURIANUM

12-53

PDCAM_ECOLI
DECARBOXYLASE

ESCHERICHIA COLI

146-173

PROENZYME

PDCDA_CORGL
DIAMINOPIMELATE

CORYNEBACTERIUM GLUTMICUM

134-161

DECARBOXYLASE

PDCDA_PSEAE
DIAMINOPIMELATE

PSEUDOMONAS AERUGINOSA

57-84

DECARBOXYLASE

PDCEB_ECOLI
GLUTAMATE DECARBOXY-

ESCHERICHIA COLI

4-31

LASE BETA

PDCHS_ENTAE
HISTIDINE DECARBOXYLASE

ENTEROBACTER AEROGENES

111-138

PDCHS_KLEPL
HISTIDINE DECARBOXYLASE

KLEBSIELLA PLANTICOLA

111-138

PDCHS_MORMO
HISTIDINE DECARBOXYLASE

MORGANELA MORGANII

111-138

PDCID_BACSU
DIPEPTIDE TRANSPORT

BACILLUS SUBTILIS

188-222

PROTEIN DCIAD

PDCLY_HAFAL
LYSINE DECARBOXYLASE

HAFNIA ALVEI

305-332

PDCOA_KLEPN
OXALOACETATE DECARB-

KLEBSIELLA PNEUMONIAE

261-288
342-369

OXYLASE ALPHA CHAIN

PDCOA_SALTY
OXALOACETATE DECARB-

SALMONELLA TYPHIMURIUM

261-288
342-369

OXYLASE ALPHA CHAIN

PDCOB_SALTY
OXALOACETATE DECARB-

SALMONELLA TYPHIMURIUM

299-326

OXYLASE BETA CHAIN

PDCTB_RHILE
TRANSPORT SENSOR

RHIZOBIUM LEGUMINOSARUM

377-411

PROTEIN DCTB

PDCTB_RHIME
TRANSPORT SENSOR

RHIZOBIUM MELILOTI

511-538

PROTEIN DCTB

PDEAD_ECOLI
ATP-DEPENDENT RNA

ESCHERICHIA COLI

268-295
518-545

HELICASE DEAD

PDEAD_KLEPN
ATP-DEPENDENT RNA

KLEBSIELLA PNEUMONIAE

267-294
519-546

HELICASE DEAD

PDEDA_ECOLI
DEDA PROTEIN

ESCHERICHIA COLI

106-133

PDEGS_BACSU
SENSOR PROTEIN DEGS

BACILLUS SUBTILIS

31-70
75-159
292-327

PDEH2_MORSP
HALOACETATE DEHALO-

MORAXELLA SP
114-141

GENASE H-2

PDEOC_ECOLI
DEOXYRIBOSE-PHOSPHATE

ESCHERICHIA COLI

134-161

ALDOLASE

PDHAL_PSEOL
ALDEHYDE DEHYDRO-

PSEUDOMONAS OLEOVORANS

6-33

GENASE

PDHAS_BACSU
ASPARTATE-SEMIALDEHYDE

BACILLUS SUBTILIS

150-184

DEHYDROGENASE

PDHAS_CORGL
ASPARTATE-SEMIALDEHYDE

CORYNEBACTERIUM GLUTMICUM

43-70
312-339

DEHYDROGENASE

PDHAS_ECOLI
ASPARTATE-SEMIALDEHYDE

ESCHERICHIA COLI

229-256

DEHYDROGENASE

PDHAS_VIBCH
ASPARTATE-SEMIALDEHYDE

VIBRIO CHOLERAE

309-336

DEHYDROGENASE

PDHA_BACSH
ALANINE DEHYDROGENASE

BACILLUS SPHAERICUS

149-176

PDHA_BACST
ALANINE DEHYDROGENASE

BACILLUS STEAROTHERMOPHILUS

94-121

PDHE2_CLODI
NAD-SPECIFIC GLUTAMATE

CLOSTRIDIUM DIFFICILE

116-143

DEHYDROGENASE

PDHE2_PEPAS
D-SPECIFIC GLUTAMATE

PEPTOSTREPTOCOCCUS

247-274
345-380

DEHYDROGENASE

ASACCHAROLYTICUS

PDHE3_SULSO
GLUTAMATE DEHYDRO-

SULFOLOBUS SOLFATARICUS

2-36

GENASE

PDHE4_CORGL
NADP-SPECIFIC GLUTAMATE

CORYNEBACTERIUM GLUTMICUM

188-215
229-256

DEHYDROGENASE

PDHGA_ACICA
GLUCOSE DEHYDROGENASE-

ACINETOBACTER CALCOACETICUS

10-59
190-217

A

PDHGB_BACME
GLUCOSE 1-DEHYDRO-

BACILLUS MEGATERIUM

27-57

GENASE B

PDHG_ECOLI
GLUCOSE DEHYDROGENASE

ESCHERICHIA COLI

436-463

PDHK1_STRVN
KETOACYL REDUCASE 1

STREPTOMYCES VIOLACEORUBER

168-195

PDHLE_BACST
LEUCINE DEHYDROGENASE

BACILLUS STEAROTHERMOPHILUS

192-219

PDHLO_AGRT4
D-LYSOPINE DEHYDRO-

AGROBACTERIUM TUMEFACIENS

317-344

GENASE

PDHM1_METEX
METHANOL DEHYDRO-

METHYLOBACTERIUM

153-187
190-224

GENASE SUBUNIT 1 PREC

EXTORQUENS

PDHM1_METOR
METHANOL DEHYDRO-

METHYLOBACTERIUM

153-187
190-224

GENASE SUBUNIT 1 PREC

ORGANOPHILUM

PDHM1_PARDE
METHANOL DEHYDRO-

PARACOCCUS DENITRIFICANS

195-222

GENASE SUBUNIT 1 PREC

PDHNA_BACSP
NADH DEHYDROGENASE

BACILLUS SP
284-314

PDHNA_ECOLI
NADH DEHYDROGENASE

ESCHERICHIA COLI

180-214

PDHOM_BACSU
HOMOSERINE DEHYDRO-

BACILLUS SUBTILIS

73-107
406-433

GENASE

PDHOM_CORGL
HOMOSERINE DEHYDRO-

CORYNEBACTERIUM GLUTMICUM

105-132

GENASE

PDHPH_BACSH
PHENYLALANINE DEHYDRO-

BACILLUS SPHAERICUS

212-239

GENASE

PDHSA_ECOLI
SUCC DEHYDROGENASE

ESCHERICHIA COLI

482-512

FLAVOPROTEIN SUBUNIT

PDHSS_ANACY
SOLUBLE HYDROGENASE 42

ANABAENA CYLINDRICA

86-113
130-168

KD SUBUNIT

PDHSS_SYNP1
SOLUBLE HYDROGENASE,

SYNECHOCOCCUS SP
133-160

SMALL SUBUNIT

PDHTM_METME
TRIMETHYLAMINE

METHYLOTROPHUS METHYLO-
439-466

DEHYDROGENASE

PHILUS

PDING_ECOLI
PROBABLE ATP-DEPENDENT

ESCHERICHIA COLI

584-611

HELICASE DING

PDIVB_BACSU
DIVISION INITIATION

BACILLUS SUBTILIS

54-82
144-141

PROTEIN

PDLD3_PSEPU
DIHYDROLIPOAMIDE

PSEUDOMONAS PUTIDA

93-120

DEHYDROGENASE

PDLDH_AZOVI
LIPOAMIDE DEHYDRO-

AZOTOBACTER VINELANDII

18-45
224-276

GENASE COMP (E3)

PDLDH_BACST
LIPOAMIDE DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

82-124

GENASE COMP (E3)

PDLDH_BACSU
LIPOAMIDE DEHYDRO-

BACILLUS SUBTILIS

82-109

GENASE COMP (E3)

PDLDH_ECOLI
DIHYDROLIPOAMIDE

ESCHERICHIA COLI

108-135

DEHYDROGENASE

PDLDH_PSEFL
DIHYDROLIPOAMIDE

PSEUDOMONAS FLUORESCENS

124-151
223-275

DEHYDROGENASE

PDMPN_PSEPU
PHENOL HYDROXYLASE P3

PSEUDOMONAS PUTIDA

63-90

PROTEIN

PDNA1_BACSU
DNAK PROTEIN

BACILLUS SUBTILIS

497-524
548-581

PDNA2_BASCU
DNAK PROTEIN

BACILLUS SUBTILIS

456-483

PDNAA_BACSU
DNAA PROTEIN

BACILLUS SUBTILIS

316-380

PDNAA_BORBU
DNAA PROTEIN

BORRELIA BURGDORFERI

182-216
248-275
341-387
436-463

PDNAA_BUCAP
DNAA PROTEIN

BUCHNERA APHIDICOLA

73-100
111-138
353-380

PDNAA_ECOLI
DNAA PROTEIN

ESCHERICHIA COLI

366-400

PDNAA_MICLU
DNAA PROTEIN

MICROCOCCUS LUTEUS

385-415

PDNAA_MYCCA
DNAA PROTEIN

MYCOPLASMA CAPRICOLUM

8-56
75-112
274-310
350-389

PDNAA_PROMI
DNAA PROTEIN

PROTEUS MIRABILIS

365-399

PDNAA_PSEPU
DNAA PROTEIN

PSEUDOMONAS PUTIDA

398-439

PDNAA_SPICI
DNAA PROTEIN

SPIROPLASMA CITRI

45-72
76-110
145-180

PDNAB_CHLTR
DNAB-LIKE PROTEIN

CHLAMYDIA TRACHOMATIS

312-353

PDNAB_ECOLI
DNAP PROTEIN

ESCHERICHIA COLI

82-109

PDNAB_SALTY
DNAP PROTEIN

SALMONELLA TYPHIMURIUM

82-109

PDNAC_ECOLI
DNAC PROTEIN

ESCHERICHIA COLI

146-190

PDNAK_BACME
DNAK PROTEIN

BACILLUS MEGATERIUM

497-524
548-581

PKNAK_BORBU
DNAK PROTEIN

BORRELIA BURGDORFERI

512-594

PDNAK_BRUOV
DNAK PROTEIN

BRUCELLA OVIS

248-275
512-546

PDNAK_CAUCR
DNAK PROTEIN

CAULOBACTER CRESCENTUS

561-588

PDNAK_CLOAB
DNAK PROTEIN

CLOSTRIDIUM ACETOBUTYLICUM

499-526

PDNAK_CLOPE
DNAK PROTEIN

CLOSTRIDIUM PERFRINGENS

496-527

PDNAK_METMA
DNAK PROTEIN

METHANOSARCINA MAZEI

523-550

PDNAK_MYCTU
DNAK PROTEIN

MYCOBACTERIUM TUBERCULOSIS

502-529

PDNAK_STRCO
DNAK PROTEIN

STREPTOMYCES COELICOLOR

45-72
533-572

PDNIR_ECOLI
REGULATORY PROTEIN DNIR

ESCHERICHIA COLI

114-141

PDNLI_ZYMMO
DNA LIGASE

ZYMOMONAS MOBILIS

658-712

PDNRJ_STRPE
TRANSDUCTION PROTEIN

STREPTOMYCES PEUCETIUS

24-51

DNRJ

PDOCK_SULSO
PROBABLE SIGNAL RECOG-

SULFOLOBUS SOLFATARICUS

104-172

NITION PARTICLE PROTE

PDP3A_BACSU
DNA POLYMERASE III,

BACILLUS SUBTILIS

58-85
417-444
1382-1416

ALPHA CHAIN

PDP3A_ECOLI
DNA POLYMERASE III,

ESCHERICHIA COLI

77-104

ALPHA CHAIN

PDP3A_SACER
DNA POLYMERASE III,

SACCHAROPOLYSPORA ERYTHRAEA

230-257

ALPHA CHAIN

PDP3A_SALTY
DNA POLYMERASE III,

SALMONELLA TYPHIMURIUM

77-104

ALPHA CHAIN

PDP3B_BACSU
DNA POLYMERASE III, BETA

BACILLUS SUBTILIS

212-239

CHAIN

PDP3B_BORBU
DNA POLYMERASE III, BETA

BORRELIA BURGDORFERI

266-313

CHAIN

PDP3B_BUCAP
DNA POLYMERASE III, BETA

BUCHNERA APHIDICOLA

31-62
308-359

CHAIN

PDP3B_MICLU
DNA POLYMERASE III, BETA

MICROCOCCUS LUTEUS

191-218

CHAIN

PDP3B_MYCCA
DNA POLYMERASE III, BETA

MYCOPLASMA CAPRICOLUM

36-70

CHAIN

PDP3B_PSEPU
DNA POLYMERASE III, BETA

PSEUDOMONAS PUTIDA

30-60

CHAIN

PDP3B_SPICI
DNA POLYMERASE III, BETA

SPIROPLASMA CITRI

78-112
129-177
273-310

CHAIN

PDP3X_BACSU
DNA POLYMERASE III SUB-

BACILLUS SUBTILIS

231-272

UNITS AND GAMMA AND TAU

PDPC2_ECOLI
DNA PRIMASE TRAC-2

ESCHERICHIA COLI

691-743

PDPC4_ECOLI
DNA PRIMASE TRAC-4

ESCHERICHIA COLI

401-448

PDPND_STRPN
DPND PROTEIN

STREPTOCOCCUS PNEUMONIAE

79-120

PDPO1_BACCA
DNA POLYMERASE I

BACILLUS CALDOTENOX

208-235

PDPO1_STRPN
DNA POLYMERASE I

STREPTOCOCCUS PNEUMONIAE

198-225
398-425
571-598
645-672

PDPO1_THEAQ
DNA POLYMERASE

THERMUS AQUATICUS

196-223
602-629

PDPO1_THEFL
DNA POLYMERASE

THERMUS AQUATICUS

597-628

PDPO2_ECOLI
DNA POLYMERASE II

ESCHERICHIA COLI

569-596

PDPOL_PYRFU
DNA POLYMERASE

PYROCOCCUS FURIOSUS

746-773

PDPOL_SULSO
DNA POLYMERASE

SULFOLOBUS SOLFATARICUS

379-406
436-463
625-659
747-774

PDPOL_THELI
DNA POLYMERASE

THERMOCOCCUS LITORALIS

332-370
551-589
892-926
1004-1031
1153-1194

PDPP_LACLA
DIPEPTIDYL PEPTIDASE IV

LACTOCOCCUS LACTIS

716-753

PDPP_LACLC
DIPEPTIDYL PEPTIDASE IV

LACTOCOCCUS LACTIS

716-753

PDPS_ECOLI
DNA PROTECTION DURING

ESCHERICHIA COLI

4-45

STARVATION PROTEIN

PDRN1_STREQ
DEOXYRIBONUCLEASE

STREPTOCOCCUS EQUISIMILIS

33-60
291-318

PRECURSOR

PDRRA_STRPE
DAUNORUBICIN RESISTANCE

STREPTOMYCES PEUCETIUS

286-313

ATP-BINDING PROTEI

PDYRA_STAAU
DIHYDROFOLATE

STAPHYLOCOCCUS AUREUS

62-89

REDUCTASE TYPE I

PE13B_BACCI
GLUCAN ENDO-1,3-BETA-

BACILLUS CIRCULANS

134-161
305-339
424-451

GLUCOSIDASE A1 PREC

PEAE_ECOLI
ATTACHING AND EFFACING

ESCHERICHIA COLI

66-100
158-185
525-552
691-725
802-836
871-905

PROTEIN

PEBGR_ECOLI
EBG OPERON REPRESSOR

ESCHERICHIA COLI

151-178

PROTEIN

PEBR_STAAU
ETHIDIUM BROMIDE RESIS-

STAPHYLOCOCCUS AUREUS

68-98

TANCE PROTEIN

PECHH_RHOCA
ENOYL-COA HYDRATASE

RHODOBACTER CAPSULATUS

222-249

HOMOLOG

PECPD_ECOLI
CHAPERONE PROTEIN ECPD

ESCHERICHIA COLI

20-47

PRECURSOR

PEDD_ZYMMO
PHOSPHOGLUCONATE

ZYMOMONAS MOBILIS

12-39

DEHYDRATASE

PEDIN_STAAU
EPIDERMAL CELL DIF INH

STAPHYLOCOCCUS AUREUS

52-79
119-146

PRECURSOR

PEF2_DESMO
ELONGATION FACTOR 2

DESULFUROCOCCUS MOBILIS

427-461

PEF2_HALHA
ELONGATION FACTOR 2

HALOBACTERIUM HALOBIUM

186-213

PEF2_METVA
ELONGATION FACTOR 2

METHANOCOCCUS VANNIELII

409-436

PEF2_SULAC
ELONGATION FACTOR 2

SULFOLOBUS ACIDOCALDARIUS

36-63
145-180

PEF2_THEAC
ELONGATION FACTOR 2

THERMOPLASMA ACIDOPHILUM

13-40
49-76
220-247

PEFG_ANANI
ELONGATION FACTOR G

ANACYSTIS NIDULANS

332-359

PEFG_ECOLI
ELONGATION FACTOR G

ESCHERICHIA COLI

234-261

PEFG_MYCLE
ELONGATION FACTOR G

MYCOBACTERIUM LEPRAE

211-259
330-357

PEFG_SALTY
ELONGATION FACTOR G

SALMONELLA TYPHIMURIUM

234-261

PEFG_SPIPL
ELONGATION FACTOR G

SPIRULINA PLATENSIS

334-374
481-511

PEFG_SYNY3
ELONGATION FACTOR G

SYNECHOCYSTIS SP
14-41

PEFT1_STRRA
ELONGATION FACTOR TU1

STREPTOMYCES RAMOCISSIMUS

221-258

PEFT2_STRRA
ELONGATION FACTOR TU2

STREPTOMYCES RAMOCISSIMUS

221-258

PEFT3_STRRA
ELONGATION FACTOR TU3

STREPTOMYCES RAMOCISSIMUS

228-255

PEFTS_ECOLI
ELONGATION FACTOR EF-TS

ESCHERICHIA COLI

101-135

PEFTS_SPICI
ELONGATION FACTOR EF-TS

SPIROPLASMA CITRI

27-54
134-161

PEFTU_BACFR
ELONGATION FACTOR TU

BACTEROIDES FRAGILIS

18-45
229-256

PEFTU_BACSU
ELONGATION FACTOR TU

BACILLUS SUBTILIS

11-45
230-257

PEFTU_BURCE
ELONGATION FACTOR TU

BURKHOLDERIA CEPACIA

26-53

PEFTU_CHLTR
ELONGATION FACTOR TU

CHLAMYDIA TRACHOMATIS

218-245

PEFTU_DEISP
ELONGATION FACTOR TU

DEINONEMA SP
230-257

PEFTU_FLESI
ELONGATION FACTOR TU

FLEXISTIPES SINUSARABICI

221-248

PEFTU_HALMA
ELONGATION FACTOR TU

HALOARCULA MARISMORTUI

4-31

PEFTU_MICLU
ELONGATION FACTOR TU

MICROCOCCUS LUTEUS

221-248

PEFTU_MYCHO
ELONGATION FACTOR TU

MYCOPLASMA HOMINIS

222-249

PEFTU_MYCLE
ELONGATION FACTOR TU

MYCOBACTERIUM LEPRAE

220-257

PEFTU_MYCTU
ELONGATION FACTOR TU

MYCOBACTERIUM TUBERCULOSIS

220-247

PEFTU_SHEPU
ELONGATION FACTOR TU

SHEWANELLA PUTREFACIENS

26-53

PEFTU_STROR
ELONGATION FACTOR TU

STREPTOCOCCUS ORALIS

232-259

PELAS_PSEAE
PSEUDOLYSIN PRECURSOR

PSEUDOMONAS AERUGINOSA

141-168

PELT1_ECOLI
T-LABILE ENTEROTOXIN A

ESCHERICHIA COLI

78-105

CHAIN PRECURSOR

PELT3_ECOLI
T-LABILE ENTEROTOXIN A

ESCHERICHIA COLI

79-106

CHAIN PRECURSOR

PELTB_CLOPE
T-LABILE ENTEROTOXIN B

CLOSTRIDIUM PERFRINGENS

228-269

CHAIN PRECURSOR

PENTD_ECOLI
ENTEROBACTIN SYNTHETASE

ESCHERICHIA COLI

154-188

COMPONENT D

PENVM_SALTY
ENVM PROTEIN

SALMONELLA TYPHIMURIUM

34-61

PEPIB_STAEP
117 KD MEMBRANE ASSOCI-

STAPHYLOCOCCUS EPIDERMIDIS

51-80
125-229
290-325
387-421
857-889

ATED PROTEIN

PEPIC_STAEP
EPIDERMIN BIOSYNTHESIS

STAPHYLOCOCCUS EPIDERMIDIS

411-447

PROTEIN EPIC

PEPIP_STAEP
SERINE PROTEASE EPIP

STAPHYLOCOCCUS EPIDERMIDIS

7-68
297-324

PRECURSOR

PEPIY_STAEP
HYPOTHETICAL 16.7 KD

STAPHYLOCOCCUS EPIDERMIDIS

70-101

PROTEIN IN EPIA 5′ REGION

PEPIZ_STAEP
HYPOTHETICAL PROTEIN IN

STAPHYLOCOCCUS EPIDERMIDIS

42-100

EPIA 5′ REGION

PERA_ECOLI
GTP-BINDING ERA PROTEIN

ESCHERICHIA COLI

18-45

PERBS_SACER
SENSORY TRANSDUCTION

SACCHAROPOLYSPORA ERYTHRAEA

209-243

PROTEIN ERYC1

PEREA_ECOLI
ERYTHROMYCIN ESTERASE

ESCHERICHIA COLI

37-64
143-170

TYPE 1

PERY3_SACER
ERYTHRONOLIDE SYNTHASE,

SACCHAROPOLYSPORA ERYTHRAEA

9-36
967-994
1117-1144

MODULES 5 AND 6

PESTA_STRSC
ESTERASE PRECURSOR

STREPTOMYCES SCABIES

128-155

PESTE_PSEFL
ARYLESTERASE

PSEUDOMONAS FLUORESCENS

162-189

PETC1_STAAU
ENTEROTOXIN TYPE C-1

STAPHYLOCOCCUS AUREUS

76-117
155-206

PRECURSOR

PETC2_STAAU
ENTEROTOXIN TYPE C-2

STAPHYLOCOCCUS AUREUS

76-117
155-206

PRECURSOR

PETC3_STAAU
ENTEROTOXIN TYPE C-3

STAPHYLOCOCCUS AUREUS

76-117
155-206

PRECURSOR

PETXA_STAAU
ENTEROTOXIN TYPE A

STAPHYLOCOCCUS AUREUS

26-69
165-192

PRECURSOR

PETXB_CLOPE
EPSILON-TOXIN, TYPE B

CLOSTRIDIUM PERFRINGENS

209-236

PRECURSOR

PETXB_STAAU
ENTEROTOXIN TYPE B

STAPHYLOCOCCUS AUREUS

64-101
173-207

PRECURSOR

PETXD_STAAU
ENTEROTOXIN TYPE D

STAPHYLOCOCCUS AUREUS

153-200

PRECURSOR

PETXE_STAAU
ENTEROTOXIN TYPE E

STAPHYLOCOCCUS AUREUS

26-69
88-115

PRECURSOR

PEUTC_SALTY
ETHANOLAMINE AMMONIA-

SALMONELLA TYPHIMURIUM

116-150

LYASE LIGHT CHAIN

PEVGA_ECOLI
PUTATIVE TRANSCRIPTION

ESCHERICHIA COLI

62-89

REG EVGA

PEVGS_ECOLI
PUTATIVE SENSOR PROTEIN

ESCHERICHIA COLI

45-79
249-276
431-458
526-553
829-856

EVGS

PEX5B_ECOLI
EXODEOXYRIBONUCLEASE V

ESCHERICHIA COLI

226-253

PEXBB_ECOLI
BIOPOLYMER TRANSPORT

ESCHERICHIA COLI

80-107

EXBB PROTEIN

PEXOA_RHIME
SUCCINOGLYCAN BIO-

RHIZOBIUM MELILOTI

180-207

SYNTHESIS PROTEIN EXOA

PEXOA_STRPN
EXODEOXYRIBONUCLEASE

STREPTOCOCCUS PNEUMONIAE

218-254

PEXOF_RHIME
EXOF PROTEIN

RHIZOBIUM MELILOTI

236-270
327-361

PEXOH_RHIME
SUCCINOGLYCAN BIO-

RHIZOBIUM MELILOTI

252-279

SYNTHESIS PROTEIN EXOH

PEXOP_RHIME
SUCCINOGLYCAN BIO-

RHIZOBIUM MELILOTI

211-242
272-299
350-391

SYNTHESIS PROTEIN EXOP

PFADB_ECOLI
FATTY OXIDATION COMPLEX

ESCHERICHIA COLI

36-63
177-204

ALPHA SUBUNIT

PFADL_ECOLI
FATTY ACID TRANSPORT

ESCHERICHIA COLI

220-247

PROTEIN PRECURSOR

PFAED_ECOLI
OUTER MEMBRANE PROTEIN

ESCHERICHIA COLI

223-257
421-453
507-541

FAED PRECURSOR

PFAEF_ECOLI
K88 MINOR FIMBRIAL SUB-

ESCHERICHIA COLI

18-48

UNIT PRECURSOR

PFAND_ECOLI
FAND PROTEIN PRECURSOR

ESCHERICHIA COLI

160-194
386-423
596-623
730-757

PFANE_ECOLI
CHAPERONE PROTEIN FANE

ESCHERICHIA COLI

22-58

PRECURSOR

PFANG_ECOLI
FANG PROTEIN PRECURSOR

ESCHERICHIA COLI

104-131

PFANH_ECOLI
FANH PROTEIN PRECURSOR

ESCHERICHIA COLI

83-141

PFAOB_PSERF
FATTY OXIDATION COMPLEX

PSEUDOMONAS FRAGI

8-42
295-322

ALPHA SUBUNIT

PFDHD_WOLSU
FDHD PROTEIN

WOLINELLA SUCCINOGENES

64-98

PFDHF_ECOLI
FORMATE DEHYDROGENASE

ESCHERICHIA COLI

613-640

PFDH_PSESR
FORMATE DEHYDROGENASE

PSEUDOMONAS SP
49-76
366-393

PFDNG_ECOLI
FORMATE DEHYDROGENASE

ESCHERICHIA COLI

288-315
323-350
696-730

PFECA_ECOLI
TRANSPORT PROTEIN FECA

ESCHERICHIA COLI

531-561

PRECURSOR

PFECC_ECOLI
TRANSPORT PROTEIN 1,

ESCHERICHIA COLI

210-237

CYTOSOLIC

PFECI_ECOLI
FECI PROTEIN

ESCHERICHIA COLI

131-158

PFEMB_STAAU
POSSIBLE PROTEIN FEMB

STAPHYLOCOCCUS AUREUS

22-56

PFENR_SYNP2
FERREDOXIN-NADP

SYNECHOCOCCUS SP
4-31

REDUCTASE

PFEPC_ECOLI
FERRIC ENTEROBACTIN

ESCHERICHIA COLI

176-203

TRANSPORT PROTEIN FEPC

PFEPE_ECOLI
FERRIC ENTEROBACTIN

ESCHERICHIA COLI

182-234
281-308

TRANSPORT PROTEIN FEPE

PFEPG_ECOLI
FERRIC ENTEROBACTIN

ESCHERICHIA COLI

128-155

TRANSPORT PROTEIN FEPG

PFERH_ANASP
FERREDOXIN, HETEROCYST

ANABAENA SP
2-29

PFERX_ANASP
FERRODOXIN-LIKE PROTEIN

ANABAENA SP
67-94

IN NIF REGION

PFHAB_BORPE
FILAMENTOUS HEMAG-

BORDETELLA PERTUSSIS

1128-1158
1359-1386
2063-2114
2841-2868
3051-3085
3167-3194

GLUTININ

PFHAC_BORPE
HAEMOLYSIN-LIKE

BORDETELLA PERTUSSIS

342-369

PROTEIN FHAC PRECURSOR

PFHLA_ECOLI
FORMATE HYDROGENLYASE

ESCHERICHIA COLI

36-63
350-384
401-428

TRANSACTIVATOR

PFHUA_ECOLI
FERRICHROME-IRON

ESCHERICHIA COLI

458-485

RECEPTOR PRECURSOR

PFHUB_ECOLI
PROTEIN FHUB PRECURSOR

ESCHERICHIA COLI

227-254

PFHUE_ECOLI
OUTER-MEMBRANE

ESCHERICHIA COLI

587-614

RECEPTOR

PFIB_SPICI
FIBRIL PROTEIN

SPIROPLASMA CITRI

161-195
326-367

PFIC_ECOLI
CELL FILAMENTATION

ESCHERICHIA COLI

151-178

PROTEIN FIC

PFIC_SALTY
CELL FILAMENTATION

SALMONELLA TYPHIMURIUM

151-178

PROTEIN FIC

PFIMC_BORPE
OUTER MEMBRANE PROTEIN

BORDETELLA PERTUSSIS

208-235
540-567
618-645

FIMC PRECURSOR

PFIMC_ECOLI
CHAPERONE PROTEIN FIMC

ESCHERICHIA COLI

51-78

PRECURSOR

PFIMD_ECOLI
FIMD PROTEIN PRECURSOR

ESCHERICHIA COLI

222-253
458-485
534-561
563-590

PFIME_ECOLI
TYPE 1 FIMBRIAE REGULA-

ESCHERICHIA COLI

165-192

TORY PROTEIN FIME

PFIMY_SALTY
FIMBRIAE Y PROTEIN

SALMONELLA TYPHIMURIUM

49-76

PFIMZ_ECOLI
FIMBRIAE Z PROTEIN

ESCHERICHIA COLI

42-69
162-192
196-230

PFIMZ_SALTY
FIMBRIAE Z PROTEIN

SALMONELLA TYPHIMURIUM

175-209

PFINQ_ECOLI
FINQ PROTEIN

ESCHERICHIA COLI

145-172

PFIRA_RICRI
FIRA PROTEIN

RICKETTSIA RICKETTSII

162-189

PFIXC_AZOCA
FIXC PROTEIN

AZORHIZOBIUM CAULINODANS

129-156

PFIXL_AZOCA
SENSOR PROTEIN FIXL

AZORHIZOBIUM CAULINODANS

247-274

PFIXL_BRAJA
SENSOR PROTEIN FIXL

BRADYRHIZOBIUM JAPONICUM

27-54
253-280

PFLA1_BORBU
FLAGELLAR FILAMENT 41 KD

BORRELIA BURGDORFERI

8-35
271-298

CORE PROTEIN

PFLA1_HALHA
FLAGELLIN A1 PRECURSOR

HALOBACTERIUM HALOBIUM

63-92
157-184

PFLA1_METVO
FLAGELLIN B1 PRECURSOR

METHANOCOCCUS VOLTAE

28-73
133-160

PFLA2_METVO
FLAGELLIN B2 PRECURSOR

METHANOCOCCUS VOLTAE

28-66

PFLA3_HALHA
FLAGELLIN B1 PRECURSOR

HALOBACTERIUM HALOBIUM

36-63

PFLA3_METVO
FLAGELLIN B3 PRECURSOR

METHANOCOCCUS VOLTAE

35-76

PFLA4_HALHA
FLAGELLIN B2 PRECURSOR

HALOBACTERIUM HALOBIUM

36-90
157-184

PFLA5_HALHA
FLAGELLIN B3 PRECURSOR

HALOBACTERIUM HALOBIUM

36-63
154-181

PFLA6_BACSU
FLAA LOCUS 22.9 KD

BACILLUS SUBTILIS

73-149
155-186

PROTEIN

PFLAA_COMCO
FLAGELLIN A

CAMPYLOBACTER COLI

15-42
144-191
497-535

PFLAA_CAMJE
FLAGELLIN A

CAMPYLOBACTER JEJUNI

220-266
310-337
500-538

PFLAA_METVO
FLAGELLIN A PRECURSOR

METHANOCOCCUS VOLTAE

28-62

PFLAA_PSEAE
FLAGELLIN

PSEUDOMONAS AERUGINOSA

3-41
51-88
97-124

PFLAA_RHIME
FLAGELLIN

RHIZOBIUM MELILOTI

181-219
228-265
360-391

PFLAA_SPIAU
FLAGELLAR FILAMENT

SPIROCHAETA AURANTIA

162-189

PROTEIN PRECURSOR

PFLAA_TREHY
FLAGELLAR FILAMENT

TREPONEMA HYODYSENTERIAE

55-89
219-285

PROTEIN PRECURSOR

PFLAA_TREPA
FLAGELLAR FILAMENT

TREPONEMA PALLIDUM

243-270

OUTER LAYER PROTEIN

PFLAB_CAMCO
FLAGELLIN B

CAMPYLOBACTER COLI

144-191
497-535

PFLAB_CAMJE
FLAGELLIN B

CAMPYLOBACTER JEJUNI

220-266
310-337
500-538

PFLAB_RHIME
FLAGELLIN

RHIZOBIUM MELILOTI

86-113
177-219
228-255
360-391

PFLAV_CLOMP
FLAVODOXIN

CLOSTRIDIUM MP
18-52

PFLAY_CAUCR
REGULATORY PROTEIN FLAY

CAULOBACTER CRESCENTUS

291-318
551-578

PFLA_BACSU
FLAGELLIN

BACILLUS SUBTILIS

102-129
228-255

PFLGG_BACSU
FLAGELLAR BASAL-BODY

BACILLUS SUBTILIS

62-89

ROD PROTEIN FLGG

PFLGK_SALTY
FLAGELLAR HOOK-

SALMONELLA TYPHIMURIUM

12-50
333-360
456-540

ASSOCIATED PROTEIN 1

PFLGL_ECOLI
FLAGELLAR HOOK-

ESCHERICHIA COLI

61-105
229-266

ASSOCIATED PROTEIN 3

PFLGL_SALTY
FLAGELLAR HOOK-

SALMONELLA TYPHIMURIUM

61-105
229-266

ASSOCIATED PROTEIN 3

PFLHD_ECOLI
FLAGELLAR TRANSCRIP-

ESCHERICHIA COLI

6-33

TIONAL ACTIVATOR FLHD

PFLIA_PSEAE
FLAGELLAR OPERON RNA

PSEUDOMONAS AERUGINOSA

198-232

POL SIGMA FACTOR

PFLIC_ECOLI
FLAGELLIN

ESCHERICHIA COLI

3-41
186-213
295-329
431-466

PFLIC_SALCH
FLAGELLIN

SALMONELLA CHOLERAE-SUIS
5-41
54-125
136-198

PFLIC_SALMU
FLAGELLIN

SALMONELLA MUENCHEN

5-41
54-88
136-177
232-259
272-299
376-403

PFLIC_SALPA
FLAGELLIN

SALMONELLA PARATYPHI-A
5-41
54-125
136-184

PFLIC_SALRU
FLAGELLIN

SALMONELLA RUBISLAW

5-41
54-125
136-196

PFLIC_SALTY
FLAGELLIN

SALMONELLA TYPHIMURIUM

5-41
54-125
136-200

PFLIC_SERMA
FLAGELLIN

SERRATIA MARCESCENS

15-42
55-89
103-130
137-164
275-321

PFLID_ECOLI
FLAGELLAR HOOK-

ESCHERICHIA COLI

32-66
106-133
160-187
216-298
386-445

ASSOCIATED PROTEIN 2

PFLID_SALTY
FLAGELLAR HOOK-

SALMONELLA TYPHIMURIUM

32-66
106-133
255-299
407-438

ASSOCIATED PROTEIN 2

PFLIE_BACSU
FLAG HOOK-BASAL

BACILLUS SUBTILIS

8-35

BODY PROTEIN FLIE

PFLIF_BACSU
FLAGELLAR M-RING

BACILLUS SUBTILIS

327-361
391-418

PROTEIN

PFLIF_CAUCR
FLAGELLAR M-RING

CAULOBACTER CRESCENTUS

24-51
297-324
361-388

PROTEIN

PFLIF_SALTY
FLAGELLAR M-RING

SALMONELLA TYPHIMURIUM

484-529

PROTEIN

PFLIG_BACSU
FLAGELLAR SWITCH

BACILLUS SUBTILIS

35-62

PROTEIN FLIG

PFLIG_ECOLI
FLAGELLAR SWITCH

ESCHERICHIA COLI

44-71

PROTEIN FLIG

PFLIH_BACSU
PROBABLE FLIH PROTEIN

BACILLUS SUBTILIS

19-46
105-132

PFLIJ_BACSU
FLAGELLAR FLIJ PROTEIN

BACILLUS SUBTILIS

7-37

PFLIJ_SALTY
FLAGELLAR FLIJ PROTEIN

SALMONELLA TYPHIMURIUM

75-118

PFLIK_BACSU
PROBABLE FLIK PROTEIN

BACILLUS SUBTILIS

77-104
117-144

PFLIL_BACSU
FLIL PROTEIN

BACILLUS SUBTILIS

30-71
78-105
109-136

PFLIL_ECOLI
FLIL PROTEIN

ESCHERICHIA COLI

105-132

PFLIL_SALTY
FLIL PROTEIN

SALMONELLA TYPHIMURIUM

103-133

PFLIM_BACSU
FLIM PROTEIN

BACILLUS SUBTILIS

148-175

PFLIM_ECOLI
FLIM PROTEIN

ESCHERICHIA COLI

251-278

PFLIN_CAUCR
FLAGELLAR MOTOR SWITCH

CAULOBACTER CRESCENTUS

56-83

PROTEIN

PFLIS_ECOLI
FLAGELLAR PROTEIN FLIS

ESCHERICHIA COLI

59-86

PFLIT_SALTY
FLAGELLAR PROTEIN FLIT

SALMONELLA TYPHIMURIUM

9-46
67-106

PFM12_PSEAE
FIMBRIAL PROTEIN

PSEUDOMONAS AERUGINOSA

30-67
80-114

PRECURSOR

PFM1A_ECOLI
TYPE-1 FIMBRIAL PROTEIN,

ESCHERICHIA COLI

5-32

A CHAIN PRECURSOR

PFM1C_ECOLI
TYPE-1 FIMBRIAL PROTEIN,

ESCHERICHIA COLI

11-38

C CHAIN PRECURSOR

PFM1_ACTVI
FIMBRIAL SUBUNIT TYPE 1

ACTINOMYCES VISCOSUS

248-282
352-379
417-444

PRECURSOR

PFM98_ECOLI
FIMBRIAL PROTEIN 987P

ESCHERICHIA COLI

114-141

PRECURSOR

PFMA0_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

110-137

PRECURSOR

PFMA1_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

107-134

PRECURSOR

PFMA2_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

107-134

PRECURSOR

PFMA7_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

110-137

PRECURSOR

PFMAA_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

123-150

PRECURSOR

PFMAF_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

107-141

PRECURSOR

PFMAH_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

95-122

PRECURSOR

PFMAI_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

111-145

PRECURSOR

PFMAJ_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

96-123

PRECURSOR

PFMCD_PSEAE
FIMBRIAL PROTEIN

PSEUDOMONAS AERUGINOSA

70-97

PRECURSOR

PFMDD_BACNO
POSSIBLE FIMBRIAL

BACTEROIDES NODOSUS

106-144
355-382

ASSEMBLY PROTEIN FIMD

PFMDH_BACNO
POSSIBLE FIMBRIAL

BACTEROIDES NODOSUS

106-144
355-382

ASSEMBLY PROTEIN FIMD

PFMF3_ECOLI
F17 FIMBRIAL PROTEIN

ESCHERICHIA COLI

97-124

PRECURSOR

PFMM1_NEIME
FIMBRIAL PROTEIN

NEISSERIA MENINGITIDIS

70-97

PRECURSOR

PFMM2_NEIGO
FIMBRIAL PROTEIN

NEISSERIA GONORRHOEAE

66-97

PRECURSOR

PFMM_MORNO
FIMBRIAL PROTEIN

MORAXELLA NONLIQUEFACIENS

108-146

PRECURSOR

PFMP1_PSEAE
FIMBRIAL PROTEIN

PSEUDOMONAS AERUGINOSA

30-67
80-114

PRECURSOR

PFMP3_PSEAE
FIMBRIAL PROTEIN

PSEUDOMONAS AERUGINOSA

70-97

PRECURSOR

PFMS1_ECOLI
CS1 FIMBRIAL SUBUNIT A

ESCHERICHIA COLI

60-87
112-139

PRECURSOR

PFMS3_ECOLI
CS3 FIMBRIAL SUBUNIT A

ESCHERICHIA COLI

49-98

PRECURSOR

PFM_HAEIN
MAJOR FIMBRIAL SUBUNIT

HAEMOPHILUS INFLUENZAE

102-129

PRECURSOR

PFNBA_STAAU
FIBRONECTIN-BINDING

STAPHYLOCOCCUS AUREUS

41-83
188-215
311-365
431-458
517-555
652-686
722-756

PROTEIN PRECURSOR

PFOLC_ECOLI
FOLYPOLYGLUTAMATE

ESCHERICHIA COLI

125-159

SYNTHASE

PFOLC_LACCA
FOLYPOLYGLUTAMATE

LACTOBACILLUS CASEI

129-156

SYNTHASE

PFPG_BACFI
FORMAMIDOPYRIMIDINE-

BACILLUS FIRMUS

153-180

DNA GLYCOSYLASE

PFRDA_ECOLI
FUMARATE REDUCTASE

ESCHERICHIA COLI

395-422

FLAVOPROTEIN SUBUNIT

PFRDA_WOLSU
FUMARATE REDUCTASE

WOLINELLA SUCCINOGENES

8-35
487-514

FLAVOPROTEIN SUBUNIT

PFRZE_—MYXXA
GLIDING MOTILITY REGULA-

MYXOCOCCUS XANTHUS

15-42
478-505

TORY PROTEIN

PFTHS_CLOTH
FORMATE--TETRAHYDRO-

CLOSTRIDIUM THERMOACETUM

163-190

FOLATE LIGASE

PFTR_METTH
FORMYLTRANSFERASE

METHANOBACTERIUM

9-43

THERMOAUTOTROPHICU

PFTSA_BACSU
CELL DIVISION PROTEIN

BACILLUS SUBTILIS

76-110

FTSA

PFTSA_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

301-338
375-418

FTSA

PFTSJ_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

4-31

FTSJ

PFTSL_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

63-90

FTSL

PFTSN_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

151-188

FTSN

PFTSX_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

278-305

FTSX

PFTSY_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

230-260

FTSY

PFUCR_ECOLI
L-FUCOSE OPERON

ESCHERICHIA COLI

7-45

ACTIVATOR

PFUMA_BACST
FUMARATE HYDRATASE

BACILLUS STEAROTHERMOPHILUS

290-317

CLASS I, AEROBIC

PFUMH_BACSU
FUMARATE HYDRATASE

BACILLUS SUBTILIS

414-445

PFUR_YERPE
FERRIC UPTAKE REGULA-

YERSINIA PESTIS

99-130

TION PROTEIN

PG3P1_ECOLI
GLYC 3-PHOS DEHYDRO-

ESCHERICHIA COLI

302-329

GENASE A

PG3P2_ANAVA
GLYC 3-PHOS DEHYDRO-

ANABAENA VARIABILIS

87-114

GENASE 2

PG3P3_ANAVA
GLYC 3-PHOS DEHYDRO-

ANABAENA VARIABILIS

162-189

GENASE 3

PG3P3_ECOLI
GLYC 3-PHOS DEHYDRO-

ESCHERICHIA COLI

236-324

GENASE C

PG3P_BACME
GLYC 3-PHOS DEHYDRO-

BACILLUS MEGATERIUM

49-76
237-271

GENASE

PG3P_BACSU
GLYC 3-PHOS DEHYDRO-

BACILLUS SUBTILIS

49-76

GENASE

PG3P_PYRWO
GLYC 3-PHOS DEHYDRO-

PYROCOCCUS WOESEI

259-286

GENASE

PG3P_THEMA
GLYC 3-PHOS DEHYDRO-

THERMOTOGA MARITIMA

290-328

GENASE

PG6PB_BACST
GLUCOSE-6-PHOSPHATE

BACILLUS STEAROTHERMOPHILUS

103-143
241-268

ISOMERASE B

PG6PD_ECOLI
GLUCOSE-6-PHOSPHATE

ESCHERICHIA COLI

301-328

1-DEHYDROGENASE

PG6PD_ZYMMO
GLUCOSE-6-PHOSPHATE

ZYMOMONAS MOBILIS

165-192

1-DEHYDROGENASE

PGACA_PSEFL
CYANIDE CONTROL PROTEIN

PSEUDOMONAS FLUORESCENS

178-205

PGAL1_SALTY
GALACTOKINASE

SALMONELLA TYPHIMURIUM

86-113

PGAL7_HAEIN
GAL-1-PHOS URIDYLYL-

HAEMOPHILUS INFLUENZAE

124-158
239-269

TRANSFERASE

PGAL7_LACHE
GAL-1-PHOS URIDYLYL-

LACTOBACILLUS HELVETICUS

304-338

TRANSFERASE

PGALF_SALTY
GALACTOSE OPERON

SALMONELLA TYPHIMURIUM

53-91

REPRESSOR

PGALR_HAEIN
GALACTOSE OPERON

HAEMOPHILUS INFLUENZAE

182-209

REPRESSOR

PGAL_PSEFL
DE D-GALACTOSE 1-

PSEUDOMONAS FLUORESCENS

251-278

DEHYDROGENASE

PGCH2_ECOLI
GTP CYCLOHYDROLASE II

ESCHERICHIA COLI

78-105

PGCH2_PHOLE
GTP CYCLOHYDROLASE II

PHOTOBACTERIUM LEIOGNATHI

197-227
246-273

PGCSH_ECOLI
GLYCINE CLEAVAGE SYSTEM

ESCHERICHIA COLI

10-37

H PROTEIN

PGCSP_ECOLI
GLYCINE DEHYDROGENASE

ESCHERICHIA COLI

216-246

PGCVA_ECOLI
GLYCINE CLEAVAGE SYSTEM

ESCHERICHIA COLI

60-94

TRANSACTIVATOR

PGENK_ECOLI
PROTEIN K

ESCHERICHIA COLI

24-51

PGER1_BACSU
SPORE GERMINATION

BACILLUS SUBTILIS

49-83
182-216
350-384

PROTEIN I

PGER3_BACSU
SPORE GERMINATION

BACILLUS SUBTILIS

293-323

PROTEIN III PRECURSOR

PGERE_BACSU
GERMINATION PROTEIN

BACILLUS SUBTILIS

13-40

GERE

PGGI2_STAHA
ANTIBACTERIAL PROTEIN 2

STAPHYLOCOCCUS HAEMO-
6-33

LYTICUS

PGGI3_STAHA
ANTIBACTERIAL PROTEIN 3

STAPHYLOCOCCUS HAEMO-
6-33

LYTICUS

PGIDA_BACSU
GLUCOSE INHIBITED

BACILLUS SUBTILIS

396-423

DIVISION PROTEIN A

PGIDA_ECOLI
GLUCOSE INHIBITED

ESCHERICHIA COLI

533-568

DIVISION PROTEIN A

PGIDA_PSEPU
GLUCOSE INHIBITED

PSEUDOMONAS PUTIDA

539-566

DIVISION PROTEIN A

PGIDB_BACSU
GLUCOSE INHIBITED

BACILLUS SUBTILIS

34-61

DIVISION PROTEIN B

PGIDB_PSEPU
GLUCOSE INHIBITED

PSEUDOMONAS PUTIDA

25-52

DIVISION PROTEIN B

PGLCP_SYNY3
GLUCOSE TRANSPORT

SYNECHOCYSTIS SP
288-322

PROTEIN

PGLDA_BACST
GLYCEROL DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

20-79

GENASE

PGLGA_ECOLI
GLYCOGEN SYNTHASE

ESCHERICHIA COLI

256-283

PGLGC_ECOLI
GLUCOSE-1-PHOSPHATE

ESCHERICHIA COLI

114-141

ADENYLYLTRANSFERASE

PGLGC_SALTY
GLUCOSE-1-PHOSPHATE

SALMONELLA TYPHIMURIUM

114-141

ADENYLYLTRANSFERASE

PGLMS_ECOLI
GLUC--FRUC-6-PHOSAMINO-

ESCHERICHIA COLI

209-243

TRANSFERASE

PGLN1_METTL
GLNB-LIKE PROTEIN 1

METHANOCOCCUS

58-85

THERMOLITHOTROPHICUS

PGLNA_ANASP
GLUTAMINE SYNTHETASE

ANABAENA SP
8-42

PGLNA_BACSU
GLUTAMINE SYNTHETASE

BACILLUS SUBTILIS

4-31

PGLNA_CLOAB
GLUTAMINE SYNTHETASE

CLOSTRIDIUM ACETOBUTYLICUM

413-440

PGLNA_ECOLI
GLUTAMINE SYNTHETASE

ESCHERICHIA COLI

144-171

PGLNA_METVO
GLUTAMINE SYNTHETASE

METHANOCOCCUS VOLTAE

203-230

PGLNA_PROVU
GLUTAMINE SYNTHETASE

PROTEUS VOLGARIS

142-169

PGLNA_PYRFU
GLUTAMINE SYNTHETASE

PYROCOCCUS FURIOSUS

391-421

PGLNA_SALTY
GLUTAMINE SYNTHETASE

SALMONELLA TYPHIMURIUM

144-171

PGLNA_STRCO
GLUTAMINE SYNTHETASE

STREPTOMYCES COELICOLOR

186-213

PGLNB_AZOBR
NITROGEN REGULATORY

AZOSPIRILLUM BRASILENSE

15-49

PROTEIN P-II

PGLNB_RHOCA
NITROGEN REGULATORY

RHODOBACTER CAPSULATUS

15-49

PROTEIN P-II

PGLNB_SYNP6
NITROGEN REGULATORY

SYNECHOCOCCUS SP
52-79

PROTEIN P-II

PGLND_ECOLI
UDP URIDYLYLTRANSFERASE

ESCHERICHIA COLI

120-147
151-178

PGLND_SALTY
UDP URIDYLYLTRANSFERASE

SALMONELLA TYPHIMURIUM

151-178

PGLNE_ECOLI
ADENYLYLTRANSFERASE

ESCHERICHIA COLI

103-130
433-460
763-790

PGLNH_ECOLI
GLUTAMINE-BINDING

ESCHERICHIA COLI

126-153

PROTEIN PRECURSOR

PGLNQ_BACST
GLUTAMINE PERMEASE

BACILLUS STEAROTHERMOPHILUS

7-34

OPERON PROTEIN GLNQ

PGLPD_BACSU
AEROBIC GLYC-3-PHOS

BACILLUS SUBTILIS

194-230

DEHYDROGENASE

PGLPD_ECOLI
AEROBIC GLYC-3-PHOS

ESCHERICHIA COLI

410-437

DEHYDROGENASE

PGLPF_BACSU
GLYCEROL UPTAKE FACILI-

BACILLUS SUBTILIS

235-274

TATOR PROTEIN

PGLPK_BACSU
GLYCEROL KINASE

BACILLUS SUBTILIS

44-93

PGLPK_ECOLI
GLYCEROL KINASE

ESCHERICHIA COLI

56-90

PGLPR_ECOLI
GLYCEROL-3-PHOSPHATE

ESCHERICHIA COLI

5-32

REGULON REPRESSOR

PGLPX_ECOLI
GLPX PROTEIN

ESCHERICHIA COLI

297-324

PGLPX_SHIFL
GLPX PROTEIN

SHIGELLA FLEXNERI

297-324

PGLRX_ECOLI
GLUTAREDOXIN

ESCHERICHIA COLI

24-51

PGLTB_ECOLI
GLUTAMATE SYNTHASE

ESCHERICHIA COLI

482-509

PGLTP_ECOLI
PROTON GLUTAMATE

ESCHERICHIA COLI

319-346

SYMPORT PROTEIN

PGLVB_ECOLI
PHOSPHOTRANSFERASE

ESCHERICHIA COLI

130-157

ENZYME TYPE-IIB

PGLYA_BRAJA
SERINE HYDROXYMETHYL-

BRADYRHIZOBIUM JAPONICUM

29-60

TRANSFERASE

PGLYA_CAMJE
SERINE HYDROXYMETHYL-

CAMPYLOBACTER JEJUNI

376-403

TRANSFERASE

PGLYA_HYPME
SERINE HYDROXYMETHYL-

HYPHOMICROBIUM METHYL-
28-55

TRANSFERASE

OVORUM

PGMG7_BACSU
COMG OPERON PROTEIN 7

BACILLUS SUBTILIS

37-67
88-122

PGNTK_BACSU
GLUCONOKINASE

BACILLUS SUBTILIS

238-271

PGP1D_CHLTR
VIRULENCE PROTEIN PGP1-D

CHLAMYDIA TRACHOMATIS

312-353

PGP2D_CHLTR
VIRULENCE PROTEIN PGP2-D

CHLAMYDIA TRACHOMATIS

97-131

PGP5D_CHLTR
VIRULENCE PROTEIN PGP5-D

CHLAMYDIA TRACHOMATIS

25-52

PGP6D_CHLTR
VIRULENCE PROTEIN PGP6-D

CHLAMYDIA TRACHOMATIS

63-106
193-220

PGP7D_CHLTR
VIRULENCE PROTEIN PGP7-D

CHLAMYDIA TRACHOMATIS

12-60

PGP8D_CHLTR
VIRULENCE PROTEIN PGP8-D

CHLAMYDIA TRACHOMATIS

94-121

PGREA_RICPR
TRANSCRIPTION ELONGA-

RICKETTSIA PROWAZEKII

15-49

TION FACTOR GREA

PGRPE_BACSU
GRPE-LIKE PROTEIN

BACILLUS SUBTILIS

27-73

PGRPE_BORBU
GRPE-LIKE PROTEIN

BORRELIA BURGDORFERI

2-79

PGRPE_CLOAB
GRPE-LIKE PROTEIN

CLOSTRIDIUM ACETOBUTYLICUM

12-83

PGRSA_BACBR
GRAMICIDIN S SYNTHETASE

BACILLUS BREVIS

545-572
799-826
840-882
1035-1062

PGRSB_BACBR
GRAMICIDIN S SYNTHETASE

BACILLUS BREVIS

48-75
94-121
241-282
1126-1153
1213-1240
2162-2189
2559-2586
2819-2846
3606-3633

II

PGSH1_ECOLI
GLUTAMATE-CYSTEINE

ESCHERICHIA COLI

239-266
274-301

LIGASE

PGSHR_ECOLI
GLUTATHIONE REDUCTASE

ESCHERICHIA COLI

100-134
270-311

PGSHR_PSEAE
GLUTATHIONE REDUCTASE

PSEUDOMONAS AERUGINOSA

80-114

PGSIA_BACSU
STARVATION-INDUCIBLE

BACILLUS SUBTILIS

74-101
265-296

PROTEIN A

PGSPD_ERWCA
PROTEIN D PRECURSOR

ERWINIA CAROTOVORA

258-285
516-543
589-619

PGSPD_ERWCH
PROTEIN D PRECURSOR

ERWINIA CHRYSANTHEMI

259-302
307-338
551-578
659-686

PGSPD_KLEPN
PROTEIN D PRECURSOR

KLEBSIELLA PNEUMONIAE

259-286

PGSPE_ERWCA
PROTEIN E

ERWINIA CAROTOVORA

329-367

PGSPE_ERWCH
PROTEIN E

ERWINIA CHRYSANTHEMI

329-367

PGSPE_KLEPN
PROTEIN E

KLEBSIELLA PNEUMONIAE

323-361

PGSPE_PSEAE
PROTEIN E

PSEUDOMONAS AERUGINOSA

122-149
331-369

PGSPF_XANCP
PROTEIN F

XANTHOMONAS CAMPESTRIS

230-257

PGSPH_PSEAE
PROTEIN H PRECURSOR

PSEUDOMONAS AERUGINOSA

18-59

PGSPI_AERHY
PROTEIN I PRECURSOR

AEROMONAS HYDROPHILA

27-61

PGSPI_ERWCA
PROTEIN I PRECURSOR

ERWINIA CAROTOVORA

35-62

PGSPJ_KLEPN
PROTEIN J PRECURSOR

KLEBSIELLA PNEUMONIAE

140-167

PGSPK_ERWCA
PROTEIN K

ERWINIA CAROTOVORA

28-55

PGSPK_ERWCH
PROTEIN K

ERWINIA CHRYSANTHEMI

28-55

PGSPK_KLEPN
PROTEIN K

KLEBSIELLA PNEUMONIAE

72-99

PGSPK_PSEAE
PROTEIN K

PSEUDOMONAS AERUGINOSA

262-289

PGSPL_ERWCH
PROTEIN L

ERWINIA CHRYSANTHEMI

7-42
248-286
331-358

PGSPL_XANCP
PROTEIN L

XANTHOMONAS CAMPESTRIS

39-73
297-324

PGSPM_ERWCA
PROTEIN M

ERWINIA CAROTOVORA

108-145

PGSQD_ERWCH
PROTEIN D PRECURSOR

ERWINIA CHRYSANTHEMI

259-302
448-475
546-573
657-684

PGTF1_STRDO
GLUCOSYLTRANSFERASE-I

STREPTOCOCCUS DOWNEI

42-69
177-204
212-239
464-491
1382-1416
1495-1529

PRECURSOR

PGTF2_STRDO
GLUCOSYLTRANSFERASE-I

STREPTOCOCCUS DOWNEI

171-198
206-233
458-485
1382-1412
1497-1524

PRECURSOR

PGTFA_STRMU
GLUCOSYLTRANSFERASE-S

STREPTOCOCCUS MUTANS

297-350

PGTFB_STRMU
GLUCOSYLTRANSFERASE-I

STREPTOCOCCUS MUTANS

42-93
110-137
161-188
199-246
313-347
592-627

PRECURSOR

PGTFC_STRMU
GLUCOSYLTRANSFERASE-SI

STREPTOCOCCUS MUTANS

4-40
110-138
235-262
330-361
614-653

PRECURSOR

PGTFS_STRDO
GLUCOSYLTRANSFERASE-S

STREPTOCOCCUS DOWNEI

275-316
436-463
1281-1315

PRECURSOR

PGTMR_METTF
POSSIBLE G-T MISMATCHES

METHANOBACTERIUM

80-107
148-175

REPAIR ENZYME

THERMOFORMICICUM

PGUAA_BACSU
GMP SYNTHASE

BACILLUS SUBTILIS

314-348
399-436
478-505

PGUAA_ECOLI
GMP SYNTHASE

ESCHERICHIA COLI

105-132

PGUB_BACCI
BETA-GLUCANASE

BACILLUS CIRCULANS

164-191

PRECURSOR

PGUB_BACLI
BETA-GLUCANASE

BACILLUS LICHENIFORMIS

132-166

PRECURSOR

PGUB_BACMA
BETA-GLUCANASE

BACILLUS MACERANS

126-160

PRECURSOR

PGUN1_BACS4
ENDOGLUCANASE A

BACILLUS SP
18-49

PGUN1_BACSU
ENDOGLUCANASE

BACILLUS SUBTILIS

270-304
376-403

PRECURSOR

PGUN1_BUTFI
ENDOGLUCANASE 1

BUTYRIVIBRIO FIBRISOLVENS

154-181
452-495

PGUN2_BACSU
ENDOGLUCANASE

BACILLUS SUBTILIS

270-304

PRECURSOR

PGUN2_THEFU
ENDOGLUCANASE E-2

THERMOMONOSPORA FUSCA

201-228

PRECURSOR

PGUN3_BACS4
ENDOGLUCANASE C

BACILLUS SP
110-137
348-378
538-565

PRECURSOR

PGUN3_BACSU
ENDOGLUCANASE

BACILLUS SUBTILIS

270-304

PRECURSOR

PGUN3_FIBSU
ENDOGLUCANASE 3

FIBROBACTER SUCCINOGENES

542-586

PRECURSOR

PGUN4_THEFU
ENDOGLUCANASE E-4

THERMOMONOSPORA FUSCA

308-342

PRECURSOR

PGUN5_THEFU
ENDOGLUCANASE E-5

THERMOMONOSPORA FUSCA

44-71

PRECURSOR

PGUNA_BACLA
ENDOGLUCANASE A

BACILLUS LAUTUS

410-437
454-481

PRECURSOR

PGUNA_CLOTM
ENDOGLUCANASE A

CLOSTRIDIUM THERMOCELLUM

354-384

PRECURSOR

PGUNA_PSEFL
ENDOGLUCANASE A

PSEUDOMONAS FLUORESCENS

762-789

PRECURSOR

PGUNA_RUMAL
ENDOGLUCANASE A

RUMINOCOCCUS ALBUS

294-321

PGUNA_RUMFL
CELLODEXTRINASE A

RUMINOCOCCUS FLAVEFACIENS

276-303

PGUNB_BACLA
ENDOGLUCANASE B

BACILLUS LAUTUS

375-450

PRECURSOR

PGUNB_CALSA
ENDOGLUCANASE B

CALDOCELLUM SACCHAROLYTI-
151-182
444-478

CUM

PGUNB_CELFI
ENDOGLUCANASE B

CELLULOMONAS FIMI

266-293

PRECURSOR

PGUNB_CLOCL
ENDOGLUCANASE B

CLOSTRIDIUM CELLULOVORANS

144-171
266-300

PRECURSOR

PGUNB_CLOTM
ENDOGLUCANASE B

CLOSTRIDIUM THERMOCELLUM

514-541

PRECURSOR

PGUNC_CELFI
ENDOGLUCANASE C

CELLULOMONAS FIMI

881-908

PRECURSOR

PGUNC_PSEFL
ENDOGLUCANASE C

PSEUDOMONAS FLUORESCENS

52-82

PRECURSOR

PGUND_CLOCE
ENDOGLUCANASE D

CLOSTRIDIUM CELLULOLYTICUM

382-453

PRECURSOR

PGUND_CLOCL
ENDOGLUCANASE D

CLOSTRIDIUM CELLULOLYTICUM

145-172
271-298

PRECURSOR

PGUNE_CLOTM
ENDOGLUCANASE E

CLOSTRIDIUM THERMOCELLUM

158-185
207-234
284-311

PRECURSOR

PGUNH_CLOTM
ENDOGLUCANASE H

CLOSTRIDIUM THERMOCELLUM

46-73
425-452

PRECURSOR

PGUNS_ERWCA
ENDOGLUCANASE

ERWINIA CAROTOVORA

20-47
115-149

PRECURSOR

PGUNX_CLOTM
PUTATIVE ENDOGLUCANASE

CLOSTRIDIUM THERMOCELLUM

105-139

X

PGUNZ_CLOSR
ENDOGLUCANASE Z

CLOSTRIDIUM STERCORARIUM

296-326
522-549

PRECURSOR

PGUN_BACPO
ENDOGLUCANASE

BACILLUS POLYMYXA

198-225

PGUN_BACS1
ENDOGLUCANASE

BACILLUS SP
321-348

PRECURSOR

PGUN_BACS6
ENDOGLUCANASE

BACILLUS SP
198-229
501-528
623-664

PRECURSOR

PGUTD_ECOLI
SORBITOL-6-PHOSPHATE 2-

ESCHERICHIA COLI

138-165

DEHYDROGENASE

PGVP1_HALHA
GAS VESICLE PROTEIN,

HALOBACTERIUM HALOBIUM

36-63

PLASMID

PGVP2_HALHA
GAS VESTILE PROTEIN,

HALOBACTERIUM HALOBIUM

36-63

CHROMOSOMAL

PGVPA_APHFL
GAS VESICLE PROTEIN

APHANIZOMENON FLOS-AQUAE
4-31
39-66

PGVPA_FREDI
GAS VESICLE PROTEIN

FREMYELLA DIPLOSIPHON

4-31
39-66

PGVPA_HALME
GAS VESICLE PROTEIN

HALOBACTERIUM MEDITERRANEI

37-64

PGVPA_MICBC
GAS VESICLE PROTEIN

MICROCYSTIS SP
39-66

PGVPA_PSEAN
GAS VESICLE PROTEIN

PSEUDONANABAENA SP
4-31
39-66

PGVPC_APHFL
GAS VESICLE PROTEIN C

APHANIZOMENON FLOS-AQUAE
8-49

PGVPC_HALHA
GAS VESICLE PROTEIN C

HALOBACTERIUM HALOBIUM

150-249

PGVPC_HALME
GAS VESICLE PROTEIN C

HALOBACTERIUM MEDITERRANEI

139-169

PGVPD_HALHA
GVPD PROTEIN, PLASMID

HALOBACTERIUM HALOBIUM

110-147

PGVPD_HALME
GVPD PROTEIN

HALOBACTERIUM MEDITERRANEI

110-147

PGVPF_HALHA
GVPF PROTEIN, PLASMID

HALOBACTERIUM HALOBIUM

13-47
135-169

PGVPF_HALME
GVPF PROTEIN

HALOBACTERIUM MEDITERRANEI

13-47

PGVPF_HALSA
GVPF PROTEIN

HALOBACTERIUM SALINARIUM

8-49

PGVPF_HALHA
GVPG PROTEIN, PLASMID

HALOBACTERIUM HALOBIUM

38-65

PGVPG_HALME
GVPG PROTEIN

HALOBACTERIUM MEDITERRANEI

38-72

PGVPH_HALHA
GVPH PROTEIN

HALOBACTERIUM HALOBIUM

10-40

PGVPI_HALME
GVPI PROTEIN

HALOBACTERIUM MEDITERRANEI

5-32

PGVPK_HALHA
GVPK PROTEIN

HALOBACTERIUM HALOBIUM

45-76

PGVPK_HALME
GVPK PROTEIN

HALOBACTERIUM MEDITERRANEI

12-39
47-74

PGVPK_HALSA
GVPK PROTEIN

HALOBACTERIUM SALINARIUM

11-38
50-77

PGVPL_HALME
GVPL PROTEIN

HALOBACTERIUM MEDITERRANEI

44-78

PGVPN_HALHA
GVPN PROTEIN

HALOBACTERIUM HALOBIUM

113-140

PGVPN_HALME
GVPN PROTEIN

HALOBACTERIUM MEDITERRANEI

15-56

PGVPO_HALME
GVPO PROTEIN

HALOBACTERIUM MEDITERRANEI

69-96
105-132

PGYRA_BACSU
DNA GYRASE SUBUNIT A

BACILLUS SUBTILIS

380-407
429-499

PGYRA_CAMJE
DNA GYRASE SUBUNIT A

CAMPYLOBACTER JEJUNI

267-310
381-408
452-479
665-695

PGYRA_ECOLI
DNA GYRASE SUBUNIT A

ESCHERICHIA COLI

266-293
449-497

PGYRA_KLEPN
DNA GYRASE SUBUNIT A

KLEBSIELLA PNEUMONIAE

266-293
448-496
518-545

PGYRA_MYCPN
DNA GYRASE SUBUNIT A

MYCOPLASMA PNEUMONIAE

4-31

PGYRA_STAAU
DNA GYRASE SUBUNIT A

STAPHYLOCOCCUS AUREUS

129-156
346-373
430-479
647-674
812-839

PGYRB_BACSU
DNA GYRASE SUBUNIT B

BACILLUS SUBTILIS

198-239

PGYRB_BORBU
DNA GYRASE SUBUNIT B

BORRELIA BURGDORFERI

154-181

PGYRB_ECOLI
DNA GYRASE SUBUNIT B

ESCHERICHIA COLI

616-643

PGYRB_HALSQ
DNA GYRASE SUBUNIT B

HALOFERAX SP
230-257

PGYRB_MYCPN
DNA GYRASE SUBUNIT B

MYCOPLASMA PNEUMONIAE

249-283

PGYRB_NEIGO
DNA GYRASE SUBUNIT B

NEISSERIA GONORRHOEAE

524-558
618-645

PGYRB_PSEPU
DNA GYRASE SUBUNIT B

PSEUDOMONAS PUTIDA

122-149
684-711

PGYRB_SPICI
DNA GYRASE SUBUNIT B

SPIROPLASMA CITRI

40-74
189-238
283-310
341-368
540-579

PGYRB_STAAU
DNA GYRASE SUBUNIT B

STAPHYLOCOCCUS AUREUS

252-279
291-318

PHDHA_ECOLI
7-ALPHA-HYDROXYSTEROID

ESCHERICHIA COLI

71-98

DEHYDROGENASE

PHELD_ECOLI
HELICASE IV

ESCHERICHIA COLI

100-134
529-556

PHEL_HAEIN
LIPROPROTEIN E PRECURSOR

HAEMOPHILUS INFLUENZAE

58-85

PHEM1_CHLVI
GLUTAMYL-TRNA

CHLOROBIUM VIBRIOFORMES

232-259

REDUCTASE

PHEM1_ECOLI
GLUTAMYL-TRNA

ESCHERICHIA COLI

289-316

REDUCTASE

PHEM1_RHOSH
5-AMINOLEVULINIC ACID

RHODOBACTER SPHAEROIDES

73-100

SYNTHASE

PHEM1_SALTY
GLUTAMYL-TRNA

SALMONELLA TYPHIMURIUM

289-316
344-371

REDUCTASE(

PHEM1_SYNY3
GLUTAMYL-TRNA

SYNECHOCYSTIS SP
163-190
350-377

REDUCTASE

PHEM2_METSC
DELTA-AMINOLEVULINIC

METHANOTHERMUS SOCIABILIS

131-158

ACID DEHYDRATASE

PHEM4_BACSU
PUTATIVE UROPORPHYRINO-

BACILLUS SUBTILIS

10-37

GEN-III SYNTHASE

PHEM4_ECOLI
UROPORPHYRINOGEN-III

ESCHERICHIA COLI

211-238

SYNTHASE

PHEMM_ECOLI
HEMM PROTEIN

ESCHERICHIA COLI

147-174

PHEMR_YEREN
HEMIN RECEPTOR

YERSINIA ENTEROCOLITICA

234-261

PRECURSOR

PHEMX_ECOLI
PUTATIVE METHYL-

ESCHERICHIA COLI

69-138
185-219

TRANSFERASE

PHEMY_BACSU
HEMY PROTEIN

BACILLUS SUBTILIS

217-262

PHEMZ_BACSU
FERROCHELATASE

BACILLUS SUBTILIS

199-226

PHETA_ANASP
HETEROCYST DIFFERENTIA-

ANABAENA SP
184-211
357-398
521-565

TION PROTEIN

PHEXA_STRPN
DNA MISMATCH REPAIR

STREPTOCOCCUS PNEUMONIAE

426-460

PROTEIN HEXA

PHEXB_STRPN
DNA MISMATCH REPAIR

STREPTOCOCCUS PNEUMONIAE

470-497

PROTEIN HEXB

PHFAB_CAUCR
POS TRANSACTIVATOR

CAULOBACTER CRESCENTUS

98-125

PROTEIN HFAB

PHFLC_ECOLI
HFLC PROTEIN

ESCHERICHIA COLI

113-140

PHFLX_ECOLI
GTP-BINDING PROTEIN HFLX

ESCHERICHIA COLI

169-196

PHFQ_ECOLI
HOST FACTOR-1 PROTEIN

ESCHERICHIA COLI

24-51

PHIFC_HAEIN
PILIATION PROTEIN HIFC

HAEMOPHILUS INFLUENZAE

356-383
404-431
447-474

PRECURSOR

PHIS2_LACLA
PHOSPHORIBOSYL-AMP

LACTOCOCCUS LACTIS

126-174

CYCLOHYDROLASE

PHIS4_ECOLI
P-5-A CARBOXAMIDE

ESCHERICHIA COLI

125-159

RIBOTIDE

PHIS4_LACLA
P-5-A CARBOXAMIDE

LACTOCOCCUS LACTIS

49-89
181-228

RIBOTIDE

PHIS4_METVA
P-5-A CARBOXAMIDE

METHANOCOCCUS VANNIELII

115-142

RIBOTIDE

PHIS4_SALTY
P-5-A CARBOXAMIDE

SALMONELLA TYPHIMURIUM

125-159

RIBOTIDE

PHIS5_LACLA
AMIDOTRANSFERASE HISH

LACTOCOCCUS LACTIS

7-34

PHIS6_ECOLI
HISF PROTEIN

ESCHERICHIA COLI

39-66
142-169

PHIS6_SALTY
HISF PROTEIN

SALMONELLA TYPHIMURIUM

39-66
142-169

PHIS7_ECOLI
IMIDAZOLEGLYCEROL-

ESCHERICHIA COLI

168-199

PHOSPHATE DEHYDRATASE

PHIS7_SALTY
IMIDAZOLEGLYCEROL-

SALMONELLA TYPHIMURIUM

161-199

PHOSPHATE DEHYDRATASE

PHIS8_ECOLI
HISTIDINOL-PHOSPHATE

ESCHERICHIA COLI

290-317

AMINOTRANSFERASE

PHIS8_HALVO
HISTIDINOL-PHOSPHATE

HALOBACTERIUM VOLCANII

174-201

AMINOTRANSFERASE

PHIS8_LACLA
HISTIDINOL-PHOSPHATE

LACTOCOCCUS LACTIS

161-188

AMINOTRANSFERASE

PHIS8_SALTY
HISTIDINOL-PHOSPHATE

SALMONELLA TYPHIMURIUM

293-320

AMINOTRANSFERASE

PHISQ_SALTY
HISTIDINE PERMEASE

SALMONELLA TYPHIMURIUM

8-35

MEMBRANE Q PROTEIN

PHISX_ECOLI
HISTIDINOL DEHYDRO-

ESCHERICHIA COLI

393-434

GENASE

PHISX_LACLA
HISTIDINOL DEHYDRO-

LACTOCOCCUS LACTIS

19-46
264-303

GENASE

PHISX_MYCSM
HISTIDINOL DEHYDRO-

MYCOBACTERIUM SMEGMATIS

288-329
399-430

GENASE

PHISX_SALTY
HISTIDINOL DEHYDRO-

SALMONELLA TYPHIMURIUM

393-434

GENASE

PHLA_STAAU
ALPHA-HEMOLYSIN

STAPHYLOCOCCUS AUREUS

69-103

PRECURSOR

PHLY1_ECOLI
HEMOLYSIN A, CHROMO-

ESCHERICHIA COLI

5-32
76-103
161-224
234-261
353-380
458-492
554-581
642-728

SOMAL

PHYL2_ECOLI
HAEMOLYSIN SECRETION

ESCHERICHIA COLI

487-514

PROTEIN, CHROMOSOMA

PHLY4_ECOLI
HEMOLYSIN D, CHROMO-

ESCHERICHIA COLI

103-133
178-215
223-331

SOMAL

PHLYA_ACTPL
HEMOLYSIN

ACTINOBACILLUS PLEURO-
5-39
136-170
184-218
273-300
350-377
459-527
846-924

PNEUMONIAE

PHLYA_ACTSU
HEMOLYSIN

ACTINOBACILLUS SUIS

5-39
136-170
184-218
273-300
350-377
459-527
846-924

PHLYA_ECOLI
HEMOLYSIN A, PLASMID

ESCHERICHIA COLI

5-32
76-103
161-262
354-381
452-493
555-582
643-729

PHLYA_PROMI
HEMOLYSIN PRECURSOR

PROTEUS MIRABILIS

165-196
299-338
356-400
425-471
498-525
528-576
610-695
705-742
747-774

789-823
841-868
966-993
1113-1140
1166-1193
1225-1273
1301-1342
1391-1461
1483-1527

PHLYA_SERMA
HEMOLYSIN PRECURSOR

SERRATIA MARCESCENS

311-345
477-504
558-585
625-703
718-745
830-864
1081-1108
1155-1202
1249-1286

1516-1553

PHLYA_VIBCH
HEMOLYSIN PRECURSOR

VIBRIO CHOLERAE

335-369
638-665

PHLYB_ACTPL
HAEMOLYSIN SECRETION

ACTINOBACILLUS PLEURO-
34-61

PROTEIN

PNEUMONIAE

PHLYB_ECOLI
HAEMOLYSIN SECRETION

ESCHERICHIA COLI

487-514

PROTEIN, PLASMID

PHLYB_PROMI
HEMOLYSIN ACTIVATOR

PROTEUS MIRABILIS

16-64
499-547

PROTEIN PRECURSOR

PHLYB_PROVU
HAEMOLYSIN SECRETION

PROTEUS VULGARIS

34-68
487-514

PROTEIN

PHLYB_SERMA
HEMOLYSIN ACTIVATOR

SERRATIA MARCESCENS

110-137

PROTEIN PRECURSOR

PHLYB_VIBCH
HEMOLYSIN SECRETION

VIBRIO CHOLERAE

335-398
413-447
458-524

PROTEIN PRECURSOR

PHLYC_ACTPL
HEMOLYSIN C

ACTINOBACILLUS PLEURO-
130-157

PNEUMONIAE

PHLYD_ACTPL
HEMOLYSIN SECRETION

ACTINOBACILLUS PLEURO-
191-331

PROTEIN APPD

PNEUMONIAE

PHLYD_ECOLI
HEMOLYSIN D, PLASMID

ESCHERICHIA COLI

103-133
178-215
223-331

PHLY_HALI7
HALOLYSIN PRECURSOR

HALOPHILIC BACTERIA

484-516

STRAIN 172P1

PHMC3_DESVH
43.2 KD PROTEIN IN HMC

DESULFOBIVRIO VULGARIS

156-186

OPERON

PHMD_METKA
H(2)-FORMING DEHYDRO-

METHANOPYRUS KANDLERI

36-63

GENASE

PHNS_SERMA
DNA-BINDING PROTEIN H-NS

SERRATIA MARCESCENS

35-62

PHOLA_ECOLI
DNA POLYMERASE III, DELTA

ESCHERICHIA COLI

94-121
288-322

SUBUNIT

PHOXA_BRAJA
REG PROTEIN HOXA

BRADYRHIZOBIUM JAPONICUM

113-163
444-471

PHOXF_NOCOP
HOXS ALPHA SUBUNIT

NOCARDIA OPACA

4-31

PHOXQ_ALCEU
HOXQ PROTEIN

ALCALIGENES EUTROPHUS

76-110

PHOXX_BRAJA
HOXX PROTEIN

BRADYRHIZOBIUM JAPONICUM

356-383

PHPI_DEIRA
HEXAGONALLY SURFACE

DEINOCCCUS RADIODURANS

585-612

PROTEIN PRECURSOR

PHPRT_LACLA
PHOSPHORIBOSYL-

LACTOCOCCUS LACTIS

3-39
71-105

TRANSFERASE

PHRDD_STRCO
SIGMA FACTOR HRDD

STREPTOMYCES COELICOLOR

296-323

PHRPB_BURSO
REGULATORY PROTEIN HRPB

BURKHOLDERIA SOLANACEARUM

371-405

PHRPH_PSESY
OUTER MEMBRANE PROTEIN

PSEUDOMONAS SYRINGAE

102-129
310-344

HRPH PRECURSOR

PHRPS_PSESH
PROBABLE REGULATORY

PSEUDOMONAS SYRINGAE

24-51

PROTEIN HRPS

PHS18_CLOAB
18 KB HEAT SHOCK PROTEIN

CLOSTRIDIUM ACETOBUTYLICUM

67-108

PHS70_HALMA
HEAT SHOCK 70 KD PROTEIN

HALOARCULA MARISMORTUI

522-576

PHS70_MYCLE
HEAT SHOCK 70 KD PROTEIN

MYCOBACTERIUM LEPRAE

461-488
503-530

PHS70_MYCPA
HEAT SHOCK 70 KD PROTEIN

MYCOBACTERIUM PARA-
460-487

TUBERCULOSIS

PHTPG_ECOLI
HEAT SHOCK PROTEIN C62.5

ESCHERICHIA COLI

221-248
482-509

PHTRA_ECOLI
PROTEASE DO PRECURSOR

ESCHERICHIA COLI

373-400

PHTRE_ECOLI
HTRE PROTEIN PRECURSOR

ESCHERICHIA COLI

454-484
524-576

PHTRJ_HALHA
SENSORY RHODOPSIN I

HALOBACTERIUM HALOBIUM

413-471
479-506

TRANSDUCER

PHTRJ_HALSA
SENSORY RHODOPSIN I

HALOBACTERIUM SALINARIUM

114-159
413-471
479-506

TRANSDUCER

PHUTP_BACSU
HUT OPERON POSITIVE

BACILLUS SUBTILIS

5-36

REGULATORY PROTEIN

PHVTJ_LACHE
HELVETICIN J

LACTOBACILLUS HELVETICUS

174-212
306-333

PHYCA_ECOLI
FORMATE HYDROGENYLASE

ESCHERICHIA COLI

73-100
106-133

SUBUNIT 1

PHYDG_ECOLI
TRANSCRIPTIONAL REGULA-

ESCHERICHIA COLI

251-278

TORY PROTEIN HYDG

PHYDG_SALTY
TRANSCRIPTIONAL REGULA-

SALMONELLA TYPHIMURIUM

251-278

TORY PROTEIN HYDG

PHYDH_ECOLI
SENSOR PROTEIN HYDH

ESCHERICHIA COLI

312-339
360-387

PHYUB_PSESN
HYDANTOIN UTILIZATION

PSEUDOMONAS SP
554-581

PROTEIN B

PHYUC_PSESN
HYDANTOIN UTILIZATION

PSEUDOMONAS SP
6-40
96-123

PROTEIN

PIAAL_PSESS
INDOLEACETATE-LYSINE

PSEUDOMONAS SYRINGAE

133-160
297-331

LIGASE

PIAP_ECOLI
ALK PHOS ISOZYME CONVER-

ESCHERICHIA COLI

74-101

SION PROTEIN

PICEN_ERWAN
ICE NUCLEATION PROTEIN

ERWINIA ANANAS

326-353
422-449
534-561
614-641
662-689
721-748
758-785
854-881
950-977

1046-1073

PICEN_ERWHE
ICE NUCLEATION PROTEIN

ERWINIA HERBICOLA

310-337
406-433
534-561
646-673
694-721
838-865
886-913
982-1009

PICEN_PSEFL
ICE NUCLEATION PROTEIN

PSEUDOMONAS FLUORESCENS

281-308
377-404
425-452
681-708
729-781
795-852

PICEN_PSESY
ICE NUCLEATION PROTEIN

PSEUDOMONAS SYRINGAE

564-602
772-847
868-895
909-943

PICEN_XANCT
ICE NUCLEATION PROTEIN

XANTHOMONAS CAMPESTRIS

496-534
555-582
1168-1204
1248-1275

PICSB_SHIFL
INTERCELLULAR SPREAD

SHIGELLA FLEXNERI

41-105
438-467

PROTEIN

PIF2_BACST
INITIATION FACTOR IF-2

BACILLUS STEAROTHERMOPHILUS

540-567
681-708

PIF2_BACSU
INITIATION FACTOR IF-2

BACILLUS SUBTILIS

173-208
394-421

PIF2_ECOLI
INITIATION FACTOR IF-2

ESCHERICHIA COLI

686-724
835-862

PIF2_ENTFC
INITIATION FACTOR IF-2

ENTEROCOCCUS FAECIUM

579-627

PIF3_BACST
INITIATION FACTOR IF-3

BACILLUS STEAROTHERMOPHILUS

7-34

PIF3_ECOLI
INITIATION FACTOR IF-3

ESCHERICHIA COLI

27-54
70-97

PIF3_KLEPN
INITIATION FACTOR IF-3

KLEBSIELLA PNEUMONIAE

27-54
70-97

PIF3_MYCFE
INITIATION FACTOR IF-3

MYCOPLASMA FERMENTANS

177-211

PIF3_PROVU
INITIATION FACTOR IF-3

PROTEUS VULGARIS

2-29
70-97

PIF3_SALTY
INITIATION FACTOR IF-3

SALMONELLA TYPHIMURIUM

27-54
70-97

PIF3_SERMA
INITIATION FACTOR IF-3

SERRATIA MARCESCENS

19-46
70-97

PIGA_NEIGO
IGA-SPECIFIC SERINE

NEISSERIA GONORRHOEAE

245-272
287-314
833-860
1024-1058
1377-1404
1483-1531

ENDOPEPTIDASE

PIGGB_STRSP
IGG BINDING PROTEIN

STREPTOCOCCUS SP
46-76
120-150
195-222

PRECURSOR

PIGGG_STRSP
IGG BINDING PROTEIN

STREPTOCOCCUS SP
46-76
120-150
195-225
270-297

PRECURSOR

PILVH_ECOLI
ACETOLACTATE SYNTHASE

ESCHERICHIA COLI

47-81
120-147

PILVH_SALTY
ACETOLACTATE SYNTHASE

SALMONELLA TYPHIMURIUM

47-81
120-147

PILVN_LACLA
ACETOLACTATE SYNTHASE

LACTOCOCCUS LACTIS

20-75

PIMPB_SALTY
IMPB PROTEIN

SALMONELLA TYPHIMURIUM

185-212

PIMP_ACICA
INOSINE-5′-MONOPHOSPHATE

ACINETOBACTER CALCOACETICUS

166-193

DEHYDROGENASE

PIMP_BACSU
E-5′-MONOPHOSPHATE

BACILLUS SUBTILIS

159-186

DEHYDROGENASE

PINA_BACTL
IMMUNE INHIBITOR A

BACILLUS THURINGIENSIS

103-130
324-358

PRECURSOR

PINLA_LISMO
INTERNALIN A

LISTERIA MONOCYTOGENES

106-143
161-188
196-232

PINLB_LISMO
INTERNALIN B PRECURSOR

LISTERIA MONOCYTOGENES

53-94
166-200
385-415

PINVA_YEREN
INVASIN

YERSINIA ENTEROCOLITICA

501-535

PIPA7_SHIFL
60 KD ANTIGEN

SHIGELLA FLEXNERI

285-312

PIPAA_SHIFL
70 KD ANTIGEN

SHIGELLA FLEXNERI

95-136
437-475
493-557
596-630

PIPAB_SHIDY
62 KD MEMBRANE ANTIGEN

SHIGELLA DYSENTERIAE

28-55
71-169
480-507
522-556

PIPAB_SHIFL
62 KD MEMBRANE ANTIGEN

SHIGELLA FLEXNERI

28-55
71-169
480-507
522-556

PIPAC_SHIDY
42 KD MEMBRANE ANTIGEN

SHIGELLA DYSENTERIAE

21-57
113-161
273-300
324-378

PRECURSOR

PIPAC_SHIFL
42 KD MEMBRANE ANTIGEN

SHIGELLA FLEXNERI

28-57
113-161
273-300
324-372

PRECURSOR

PIPAD_SHIDY
37 KD MEMBRANE ANTIGEN

SHIGELLA DYSENTERIAE

47-86
291-318

IPAD

PIPAD_SHIFL
36 KD MEMBRANE ANTIGEN

SHIGELLA FLEXNERI

47-86
259-286
291-318

PIPGB_SHIDY
IPGB PROTEIN

SHIGELLA DYSENTERIAE

175-202

PIPGB_SHIFL
IPGB PROTEIN

SHIGELLA FLEXNERI

175-202

PIPT_PSESS
ISOPENTENYL TRANSFERASE

PSEUDOMONAS SYRINGAE

53-87
143-173

PIPYR_ECOLI
INORGANIC PYROPHOSPHA-

ESCHERICHIA COLI

138-172

TASE

PIRGA_VIBCH
VIRULENCE PROTEIN

VIBRIO CHOLERAE

212-239
336-377

PRECURSOR

PIRGB_VIBCH
VIRULENCE REGULATORY

VIBRIO CHOLERAE

67-97

PROTEIN IRGB

PIRPA_SYNP7
IRON-REGULATED PROTEIN A

SYNECHOCOCCUS SP
167-194

PISBD_SHIDY
INSERTION ELEMENT ISO-

SHIGELLA DYSENTERIAE

86-113

ISID PROTEIN INSB

PISBN_SHIDY
INSERTION ELEMENT ISO-

SHIGELLA DYSENTERIAE

6-37

ISIN PROTEIN INSB

PISB_ECOLI
INSERTION ELEMENT IS1

ESCHERICHIA COLI

122-149

PROTEIN INSB

PISB_SHIFL
INSERTION ELEMENT IS1

SHIGELLA FLEXNERI

86-113

PROTEIN INSB

PISB_SHISO
INSERTION ELEMENT IS1

SHIGELLA SONNEI

86-113

PROTEIN INSB

PISP1_BACSU
MAJOR INTRACELLULAR

BACILLUS SUBTILIS

115-142
197-224
253-280

SERINE PROTEASE

PISP_BACPO
INTRACELLULAR SERINE

BACILLUS POLYMYXA

109-143

PROTEASE

PISTA_ECOLI
ISTA PROTEIN

ESCHERICHIA COLI

183-210

PISTA_SHISO
ISTA PROTEIN

SHIGELLA SONNEI

183-210

PIUTA_ECOLI
FERRIC AEROBACTIN

ESCHERICHIA COLI

186-213
525-552
559-593

RECEPTOR PRECURSOR

PJAG_BACSU
JAG PROTEIN

BACILLUS SUBTILIS

68-95

PK6P2_ECOLI
6-PHOSPHOFRUCTOKINASE

ESCHERICHIA COLI

143-170

ISOZYME 2

PKAD_BACSU
ADENYLATE KINASE

BACILLUS SUBTILIS

188-215

PKAD_LACLA
ADENYLATE KINASE

LACTOCOCCUS LACTIS

186-213

PKANU_BACSP
KANAMYCIN NUCLEOTIDYL-

BACILLUS SP
69-96

TRANSFERASE

PKANU_STAAU
KANAMYCIN NUCLEOTIDYL-

STAPHYLOCOCCUS AUREUS

69-96

TRANSFERASE

PKDGT_ECOLI
2-KETO-3-DEOXYGLUCONATE

ESCHERICHIA COLI

70-97

PERMEASE

PKDGT_ERWCH
2-KETO-3-DEOXYGLUCONATE

ERWINIA CHRYSANTHEMI

126-153

PERMEASE

PKDTA_ECOLI
3-DEOXY-D-MANNO-

ESCHERICHIA COLI

369-396

OCTULOSONIC-ACID TRANS

PKGTP_ECOLI
ALPHA-KETOGLUTARATE

ESCHERICHIA COLI

7-34

PERMEASE

PKGUA_ECOLI
GUANYLATE KINASE

ESCHERICHIA COLI

162-189

PKHSE_BACSU
HOMOSERINE KINASE

BACILLUS SUBTILIS

49-76

PKHSE_FREDI
HOMOSERINE KINASE

FREMYELLA DIPLOSIPHON

52-79

PKKA4_BACCI
AMINOGLYCOSIDE 3′-

BACILLUS CIRCULANS

12-39

PHOSPHOTRANSFERASE

PKORB_ECOLI
KORB TRANSCRIPTIONAL

ESCHERICHIA COLI

228-255

REPRESSOR PROTEIN

PKPY1_SPICI
PYRUVATE KINASE

SPIROPLASMA CITRI

112-148

PKPYK_BACST
PYRUVATE KINASE

BACILLUS STEAROTHERMOPHILUS

331-374

PLACA_STAAU
ISOMERASE LACA SUBUNIT

STAPHYLOCOCCUS AUREUS

9-64

PLACA_STRMU
ISOMERASE LACA SUBUNIT

STAPHYLOCOCCUS MUTANS

26-60

PLACC_STRMU
TAGATOSE-6-PHOSPHATE

STAPHYLOCOCCUS MUTANS

56-83
283-310

KINASE

PLACG_LACCA
6-PHOSPHO-BETA-GALACTO-

LACTOBACILLUS CASEI

290-317

SIDASE

PLACI_ECOLI
LACTOSE OPERON

ESCHERICHIA COLI

9-36

REPRESSOR

PLACI_KLEPN
LACTOSE OPERON

KLEBSIELLA PNEUMONIAE

195-229

REPRESSOR

PLACR_STAAU
PHOSPHOTRANSFERASE

STAPHYLOCOCCUS AUREUS

2-29

REPRESSOR

PLACR_STRMU
PHOSPHOTRANSFERASE

STREPTOCOCCUS MUTANS

2-32

REPRESSOR

PLACY_LACDE
LACTOSE PERMEASE

LACTOBACILLUS DELBRUECKII

196-230

PLAFB_VIBPA
FLAGELLAR HOOK-

VIBRIO PARAHAEMOLYTICUS

62-89
388-415

ASSOCIATED PROTEIN 2

PLAMB_KLEPN
MALTOPORIN PRECURSOR

KLEBSIELLA PNEUMONIAE

337-364

PLAMI_CLOTM
ENDO-1,3(4)-BETA-

CLOSTRIDIUM THERMOCELLUM

132-159

GLUCANASE PRECURSOR

PLASI_PSEAE
OHHL SYNTHESIS PROTEIN

PSEUDOMONAS AERUGINOSA

171-198

LASI

PLCCI_LEUGE
PROBABLE LEUCOCIN A

LEUCONOSTOC GELIDUM

41-71

IMMUNITY PROTEIN

PLCNC_LACLA
LACTOCOCCIN A SECRETION

LACTOCOCCUS LACTIS

162-189
207-234
388-433

PROTEIN LCNC

PLCND_LACLA
LACTOCOCCIN A SECRETION

LACTOCOCCUS LACTIS

99-126
140-202
237-307

PROTEIN LCND

PLCRD_YEREN
LOW CALCIUM RESPONSE

YERSINIA ENTEROCOLITICA

122-149
491-518

LOCUS PROTEIN D

PLCRD_YERPE
LOW CALCIUM RESPONSE

YERSINIA PESTIS

122-149
491-518

LOCUS PROTEIN D

PLCRV_YERPE
VIRULENCE-ASSOCIATED V

YERSINIA PESTIS

22-49
157-184
240-267

ANTIGEN

PLCRV_YERPS
VIRULENCE-ASSOCIATED V

YERSINIA PSEUDOTUBERCULOSIS

22-49
240-267

ANTIGEN

PLCTB_BACCA
LCTB PROTEIN

BACILLUS CALDOTENAX

18-45

PLCTB_BACST
LCTB PROTEIN

BACILLUS STEAROTHERMOPHILUS

14-45

PLDHD_LACPL
D-LACTATE DEHYDRO-

LACTOBACILLUS PLANTARUM

51-81

GENASE

PLDHP_BACPS
L-LACTATE DEHYDRO-

BACILLUS PSYCHRO-
2-43
241-272
279-306

GENASE P

SACCHAROLYTICUS

PLDHX_BACPS
L-LACTATE DEHYDRO-

BACILLUS PSYCHRO-
2-43
241-275
279-306

GENASE X

SACCHAROLYTICUS

PLDH_BACME
L-LACTATE DEHYDRO-

BACILLUS MEGATERIUM

244-274

GENASE

PLDH_BACST
L-LACTATE DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

241-268
279-313

GENASE

PLDH_BACSU
L-LACTATE DEHYDRO-

BACILLUS SUBTILIS

8-42
240-267

GENASE

PLDH_BIFLO
L-LACTATE DEHYDRO-

BIFIDOBACTERIUM LONGUM

22-49

GENASE

PLDH_LACPL
L-LACTATE DEHYDRO-

LACTOBACILLUS PLANTARUM

197-231

GENASE

PLDH_LISMO
L-LACTATE DEHYDRO-

LISTERIA MONOCYTOGENES

42-69

GENASE

PLDH_MYCHY
L-LACTATE DEHYDRO-

MYCOPLASMA HYOPNEUMONIAE

276-310

GENASE

PLDH_THEAQ
L-LACTATE DEHYDRO-

THERMUS AQUATICUS

3-30

GENASE

PLEF_BACAN
LETHAL FACTOR PRECURSOR

BACILLUS ANTHRACIS

165-192
304-331
480-514
548-578
619-658
737-764

PLEPA_PSEFL
LEPA PROTEIN

PSEUDOMONAS FLUORESCENS

23-50

PLEP_BACSU
SIGNAL PEPTIDASE I

BACILLUS SUBTILIS

3-30

PLEU1_ECOLI
2-ISOPROPYLMALATE

ESCHERICHIA COLI

437-464

SYNTHASE

PLEU1_LACLA
2-ISOPROPYLMALATE

LACTOCOCCUS LACTIS

22-49
379-484

SYNTHASE

PLEU3_BACCO
3-ISOPROPYLMALATE

BACILLUS COAGULANS

331-358

DEHYDROGENASE

PLEU3_CLOPA
3-ISOPROPYLMALATE

CLOSTRIDIUM PASTEURIANUM

185-212

DEHYDROGENASE

PLEUD_LACLA
3-ISOPROPYLMALATE

LACTOCOCCUS LACTIS

163-190

DEHYDRATASE

PLEVR_BACSU
TRANSCRIPTIONAL REGULA-

BACILLUS SUBTILIS

297-324
676-703
744-774
785-822

TORY PROTEIN LEVR

PLEXA_ERWCA
LEXA REPRESSOR

ERWINIA CAROTOVORA

146-173

PLIP1_MORSP
LIPASE 1

MORAXELLA SP
26-53

PLIP2_MORSP
LIPASE 2

MORAXELLA SP
356-383

PLIPB_ECOLI
LIPB PROTEIN

ESCHERICHIA COLI

66-93

PLIP_BURCE
LIPASE PRECURSOR

BURKHOLDERIA CEPACIA

176-203

PLIP_PSEFL
LIPASE PRECURSOR

PSEUDOMONAS FLUORESCENS

8-35

PLIP_PSES5
LIPASE PRECURSOR

PSEUDOMONAS SP
176-203

PLIP_STAAU
LIPASE PRECURSOR

STAPHYLOCOCCUS AUREUS

80-146
512-546

PLIVB_SALTY
LEU/ILE/VAL/THR-BINDING

SALMONELLA TYPHIMURIUM

193-220

PROTEIN PRECURSOR

PLIVC_SALTY
LEUCINE-SPECIFIC BINDING

SALMONELLA TYPHIMURIUM

195-222

PROTEIN PRECURSOR

PLIVE_SALTY
AMINO ACID TRANSPORT

SALMONELLA TYPHIMURIUM

121-148

PROTEIN LIVE

PLIVF_ECOLI
AMINO ACID TRANSPORT

ESCHERICHIA COLI

23-50

PROTEIN LIVF

PLIVJ_CITFR
LEU/ILE/VAL-BINDING

CITROBACTER FREUNDII

195-222

PROTEIN PRECURSOR

PLIVJ_ECOLI
LEU/ILE/VAL-BINDING

ESCHERICHIA COLI

195-222

PROTEIN PRECURSOR

PLIVK_ECOLI
LEUCINE-SPECIFIC BINDING

ESCHERICHIA COLI

195-222

PROTEIN PRECURSOR

PLIVM_ECOLI
AMINO ACID TRANSPORT

ESCHERICHIA COLI

121-148

PROTEIN LIVM

PLKTA_ACTAC
LEUKOTOXIN

ACTINOBACILLUS ACTINO-
113-147
173-213
398-443
451-488
593-620
655-711

MYCETEMCOMITANS

PLKTA_PASHA
LEUKOTOXIN

PASTEURELLA HAEMOLYTICA

53-99
179-216
345-372
409-436
455-482
496-530
545-572
811-838
853-926

PLKTB_ACTAC
LEUKOTOXIN SECRETION

ACTINOBACILLUS ACTINO-
487-514

PROTEIN

MYCETEMCOMITANS

PLKTB_PASHA
LEUKOTOXIN SECRETION

PASTEURELLA HAEMOLYTICA

42-69
78-105
488-515

PROTEIN

PLKTC_ACTAC
LTC PROTEIN

ACTINOBACILLUS ACTINO-
58-85
116-150

MYCETEMCOMITANS

PLKTC_PASHA
LKTC PROTEIN

PASTEURELLA HAEMOLYTICA

123-157

PLKTD_ACTAC
LKTD PROTEIN

ACTINOBACILLUS ACTINO-
116-164
205-242
278-305
364-391

MYCETEMCOMITANS

PLKTD_PASHA
LKTD PROTEIN

PASTEURELLA HAEMOLYTICA

184-289

PLON_ECOLI
ATP-DEPENDENT PROTEASE

ESCHERICHIA COLI

121-148

LA

PLPXA_RICRI
UDP-N-ACETYLGLUCO-

RICKETTSIA RICKETTSII

229-256

SAMINE ACYLTRANSFERASE

PLSPA_ECOLI
LIPOPROTEIN SIGNAL

ESCHERICHIA COLI

10-37

PEPTIDASE

PLSPA_STAAU
LIPOPROTEIN SIGNAL

STAPHYLOCOCCUS AUREUS

134-161

PEPTIDASE

PLUKF_STAAU
LEUKOCIDIN F SUBUNIT

STAPHYLOCOCCUS AUREUS

161-195

PRECURSOR

PLUKS_STAAU
LEUKOCIDIN S SUBUNIT

STAPHYLOCOCCUS AUREUS

157-207

PRECURSOR

PLUXA_KRYAL
ALKANAL MONOOXYGENASE

KRYPTOPHANARON ALFREDI

190-217

ALPHA CHAIN

PLUXB_PHOPO
ALKANAL MONOOXYGENASE

PHOTOBACTERIUM

188-217
257-291

BETA CHAIN

PHOSPHOREUM

PLUXB_VIBHA
ALKANAL MONOOXYGENASE

VIBRIO HARVEYI

373-400

BETA CHAIN

PLUXC_PHOLE
ACYL-COA REDUCTASE

PHOTOBACTERIUM LEIOGNATHI

44-81

PLUXC_PHOPO
ACYL-COA REDUCTASE

PHOTOBACTERIUM

54-91

PHOSPHOREUM

PLUXC_VIBFI
ACYL-COA REDUCTASE

VIBRIO FISCHERI

16-65

PLUXC_XENLU
ACYL-COA REDUCTASE

XENORHABDUS LUMINESCENS

39-69

PLUXD_PHOLE
ACYL TRANSFERASE

PHOTOBACTERIUM LEIOGNATHI

89-119
218-245

PLUXE_VIBHA
LUCIFERIN-COMPONENT

VIBRIO HARVEYI

30-57

LIGASE

PLUXF_PHOLE
NON-FLUORESCENT FLAVO-

PHOTOBACTERIUM LEIOGNATHI

145-172

PROTEIN

PLUXF_PHOPO
NON-FLUORESCENT FLAVO-

PHOTOBACTERIUM

37-85
99-126

PROTEIN

PHOSPHOREUM

PLUXG_VIBFI
PROBABLE FLAVIN

VIBRIO FISCHERI

137-168

REDUCTASE

PLUXH_VIBHA
LUXH PROTEIN

VIBRIO HARVEYI

96-123

PLUXI_VIBFI
OHHL SYNTHESIS PROTEIN

VIBRIO FISCHERI

30-58

LUXI

PLUXJ_VIBFI
OHHL SYNTHESIS PROTEIN

VIBRIO FISCHERI

30-57

LUXI

PLUXP_PHOPO
LUMAZINE PROTEIN

PHOTOBACTERIUM

51-85
162-189

PHOSPHOREUM

PLUXR_VIBHA
LUXR REGULATORY PROTEIN

VIBRIO HARVEYI

61-88

PLXB1_PHOLE
ALKANAL MONOOXYGENASE

PHOTOBACTERIUM LEIOGNATHI

268-295

BETA CHAIN

PLXB2_PHOLE
ALKANAL MONOOXYGENASE

PHOTOBACTERIUM LEIOGNATHI

228-255

BETA CHAIN

PLYB_BACSU
B-ENZYME

BACILLUS SUBTILIS

87-114

PLYC_CLOAB
AUTOLYTIC LYSOZYME

CLOSTRIDIUM ACETOBUTYLICUM

91-118

PLYSP_ECOLI
LYSINE-SPECIFIC PERMEASE

ESCHERICHIA COLI

142-176

PLYTB_BACSU
AMIDASE ENHANCER

BACILLUS SUBTILIS

55-82
150-177
467-513
555-585

PRECURSOR

PLYTB_ECOLI
LYTB PROTEIN

ESCHERICHIA COLI

210-237

PLYTC_BACSU
AMIDASE PRECURSOR

BACILLUS SUBTILIS

179-213
225-252

PLYTR_BACSU
MEMBRANE-BOUND PROTEIN

BACILLUS SUBTILIS

13-64
259-303

LYTR

PM12_STRPY
M PROTEIN, SEROTYPE 12

STREPTOCOCCUS PYOGENES

46-92
114-156
191-300
305-342
383-417
436-494

PRECURSOR

PM24_STRPY
M PROTEIN, SEROTYPE 24

STREPTOCOCCUS PYOGENES

12-46
89-128
175-202
245-272
280-313
399-457

PRECURSOR

PM49_STRPY
M PROTEIN, SEROTYPE 49

STREPTOCOCCUS PYOGENES

12-174
269-327

PRECURSOR

PM5_STRPY
M PROTEIN, SEROTYPE 5

STREPTOCOCCUS PYOGENES

5-39
56-263
306-333
352-410

PRECURSOR

PM6_STRPY
M PROTEIN, SEROTYPE 6

STREPTOCOCCUS PYOGENES

12-39
70-282
290-324
343-401

PRECURSOR

PMALE_ECOLI
MALTOSE-BINDING PROTEIN

ESCHERICHIA COLI

20-47

PRECURSOR

PMALE_ENTAE
MALTOSE-BINDING PROTEIN

ENTEROBACTER AEROGENES

20-47

PRECURSOR

PMALK_ENTAE
INNER MEMBRANE PROTEIN

ENTEROBACTER AEROGENES

3-30

MALK

PMALT_ECOLI
MALT REGULATORY PROTEIN

ESCHERICHIA COLI

852-879

PMALX_STRPN
MALX PROTEIN PRECURSOR

STREPTOCOCCUS PNEUMONIAE

40-67
180-207

PMANB_BACSM
1,4-BETA-MANNOSIDASE A

BACILLUS SP
410-441

AND B PREC

PMANB_CALSA
B-MANNANASE/ENDO-

CALDOCELLUM

389-423
592-626
1222-1256
1296-1323

GLUCANASE A PREC

SACCHAROLYTICUM

PMAOX_BACST
MALATE OXIDOREDUCTASE

BACILLUS STEAROTHERMOPHILUS

246-273

PMARR_ECOLI
ANTIBIOTIC RESISTANCE

ESCHERICHIA COLI

95-122

PROTEIN MARR

PMBEB_ECOLI
MOBILIZATION PROTEIN

ESCHERICHIA COLI

38-65
100-134

MBEB

PMBHL_WOLSU
QUINONE-REAC NI/FE-

WOLINELLA SUCCINOGENES

440-471

HYDROGENASE

PMCBB_ECOLI
MCBB PROTEIN

ESCHERICHIA COLI

47-74
122-163

PMCBD_ECOLI
MCBD PROTEIN

ESCHERICHIA COLI

172-206
226-253
306-345

PMCP1_ECOLI
METHYL-ACCEPTING

ESCHERICHIA COLI

272-299

CHEMOTAXIS PROTEIN I

PMCP2_ECOLI
METHYL-ACCEPTING

ESCHERICHIA COLI

258-306

CHEMOTAXIS PROTEIN II

PMCP2_SALTY
METHYL-ACCEPTING

SALMONELLA TYPHIMURIUM

258-306

CHEMOTAXIS PROTEIN II

PMCP3_ECOLI
METHYL-ACCEPTING

ESCHERICHIA COLI

288-315

CHEMOTAXIS PROTEIN III

PMCP4_ECOLI
METHYL-ACCEPTING

ESCHERICHIA COLI

111-145
164-191
277-304

CHEMOTAXIS PROTEIN IV

PMCPA_CAUCR
CHEMORECEPTOR MCPA

CAULOBACTER CRESCENTUS

260-287
369-403
516-543

PMCPC_SALTY
CHEMOTAXIS CITRATE

SALMONELLA TYPHIMURIUM

314-348

TRANDUCER

PMCPD_ENTAE
CHEMOTAXIS ASPARTATE

ENTEROBACTER AEROGENES

275-302

TRANSDUCER

PMCPS_ENTAE
CHEMOTAXIS SERINE

ENTEROBACTER AEROGENES

41-68
158-208
317-351
488-522

TRANSDUCER

PMCRA_ECOLI
SPECIFIC RESTRICTION

ESCHERICHIA COLI

37-71

ENZYME A

PMCRA_METBA
METHYL-COENZYME M

METHANOSARCINA BARKERI

375-405

REDUCTASE

PMCRA_METVA
METHYL-COENZYME M

METHANOCOCCUS VANNIELII

335-362

REDUCTASE

PMCRA_METVO
METHYL-COENZYME M

METHANOCOCCUS VOLTAE

336-363

REDUCTASE

PMCRB_METFE
METHYL-COENZYME M

METHANOTHERMUS FERVIDUS

267-294

REDUCTASE

PMCRB_METVO
METHYL-COENZYME M

METHANOCOCCUS VOLTAE

247-274

REDUCTASE

PMCRC_ECOLI
MCRC PROTEIN

ESCHERICHIA COLI

111-145

PMCRD_METVO
REDUCTASE OPERON

METHANOCOCCUS VOLTAE

54-91

PROTEIN D

PMDH_ECOLI
MALATE DEHYDROGENASE

ESCHERICHIA COLI

127-154

PMDH_METFE
MALATE DEHYDROGENASE

METHANOTHERMUS FERVIDUS

54-88

PMDH_SALTY
MALATE DEHYDROGENASE

SALMONELLA TYPHIMURIUM

127-154

PMDL_ECOLI
MDL PROTEIN

ESCHERICHIA COLI

464-491
684-711
992-1019

PMDOH_ECOLI
BIOSYNTHESIS PROTEIN

ESCHERICHIA COLI

119-152

MDOH

PMECI_STAEP
METHICILLIN RESIS REG

STAPHYLOCOCCUS EPIDERMIDIS &
88-122

PROTEIN MECI

AUREUS

PMECR_STAEP
METHICILLIN RESISTANCE

STAPHYLOCOCCUS EPIDERMIDIS &
439-495
546-573

MECR1 PROTEIN

AUREUS

PMEMB_METCA
METHANE MONOOXYGENASE

METHYLOCOCCUS CAPSULATUS

214-248

COMPONENT A

PMEMB_METTR
METHANE MONOOXYGENASE

METHYLOSINUS TRICHOSPORIUM

321-348

COMPONENT A

PMEND_ECOLI
SHCHC SYNTHASE

ESCHERICHIA COLI

333-367

PMER4_STRLI
PROBABLE HG TRANSPORT

STREPTOMYCES LIVIDANS

159-186

PROTEIN

PMERA_BACSR
MERCURIC REDUCTASE

BACILLUS SP
146-180

PMERA_STAAU
MERCURIC REDUCTASE

STAPHYLOCOCCUS AUREUS

292-347
352-386

PMERR_STAAU
MERCURIC RESISTANCE

STAPHYLOCOCCUS AUREUS

86-113

OPERON REG PROTEIN

PMETB_ECOLI
CYSTATHIONINE GAMMA-

ESCHERICHIA COLI

356-383

SYNTHASE

PMETC_ECOLI
CYSTATHIONINE BETA-

ESCHERICHIA COLI

363-390

LYASE

PMETC_SALTY
CYSTATHIONINE BETA-

SALMONELLA TYPHIMURIUM

2-29

LYASE

PMETE_ECOLI
METHIONINE SYNTHASE

ESCHERICHIA COLI

448-482

PMETH_ECOLI
METHIONINE SYNTHASE

ESCHERICHIA COLI

371-398
642-676

PMFD_ECOLI
TRANSCRIPTION-REPAIR

ESCHERICHIA COLI

185-212

COUPLING FACTOR

PMGLA_ECOLI
GALACTOSIDE-BINDING

ESCHERICHIA COLI

62-89
312-380

PROTEIN

PMINC_BACSU
SEPTUM SITE-DETERMINING

BACILLUS SUBTILIS

65-122

PROTEIN MINC

PMIOC_ECOLI
MIOC PROTEIN

ESCHERICHIA COLI

102-129

PM1P_CHLTR
27 KD MEMBRANE PROTEIN

CHLAMYDIA TRACHOMATIS

41-75

PRECURSOR

PM1P_LEGMI
OUTER MEMBRANE PROTEIN

LEGIONELLA MICDADEI

106-133

MIP PRECURSOR

PMLS1_ENTFA
RRNA ADENINE N-6-METHYL-

ENTEROCOCCUS FAECALIS

4-81
120-154

TRANSFERASE

PMLS1_STAAU
RRNA ADENINE N-6-METHYL-

STAPHYLOCOCCUS AUREUS

9-47

TRANSFERASE

PMLS2_ENTFA
RRNA ADENINE N-6-METHYL-

ENTEROCOCCUS FAECALIS

4-81
120-154

TRANSFERASE

PMLSB_BACFR
RRNA ADENINE N-6-METHYL-

BACTEROIDES FRAGILIS

16-43

TRANSFERASE

PMLSB_ECOLI
RRNA ADENINE N-6-METHYL-

ESCHERICHIA COLI

4-81
120-154

TRANSFERASE

PMLSB_STRPN
RRNA ADENINE N-6-METHYL-

STREPTOCOCCUS PNEUMONIAE

4-81
120-154

TRANSFERASE

PMLSB_STRSA
RRNA ADENINE N-6-METHYL-

STREPTOCOCCUS SANGUIS

4-81
120-154

TRANSFERASE

PMLSC_BACFR
RRNA ADENINE N-6-METHYL-

BACTEROIDES FRAGILIS

16-43

TRANSFERASE

PMMOB_METC
METHANE MONOOXYGENASE

METHYLOCOCCUS CAPSULATUS

34-64

REG PROTEIN B

PMOAB_ECOLI
MOLYBD COFAC BIOSYN

ESCHERICHIA COLI

49-76

PROTEIN B

PMOBA_THIFE
MOBA PROTEIN

THIOBACILLUS FERROOXIDANS

94-121
251-278

PMOBC_THIFE
MOBC PROTEIN

THIOBACILLUS FERROOXIDANS

20-47

PMOBD_THIFE
MOBC PROTEIN

THIOBACILLUS FERROOXIDANS

95-132

PMOB_ECOLI
MOB PROTEIN

ESCHERICHIA COLI

45-72

PMOEA_ECOLI
MOLYBDOPTERIN BIO-

ESCHERICHIA COLI

243-270

SYNTHESIS MOEA PROTEIN

PMOP1_CLOPA
MOLYBDENUM-PTERIN

CLOSTRIDIUM PASTEURIANUM

26-53

BINDING PROTEIN I

PMOP2_CLOPA
MOLYBDENUM-PTERIN

CLOSTRIDIUM PASTEURIANUM

26-64

BINDING PROTEIN II

PMOXY_PARDE
METHANOL UTIL CONT

PARACOCCUS DENITRIFICANS

200-234
307-334

PROTEIN MOXY

PMPEU_SYNPY
BILIN BIOSYNTHESIS

SYNECHOCOCCUS SP
2-36
80-107
198-225

PROTEIN MPEU

PMPEV_SYNPY
BILIN BIOSYNTHESIS

SYNECHOCOCCUS SP
2-31
175-216

PMPRA_ECOLI
MPRA PROTEIN

ESCHERICHIA COLI

136-163

PMRAY_BACSU
PENTAPEPTIDE-

BACILLUS SUBTILIS

106-133
247-281

TRANSFERASE

PMREB_BACCE
ROD SHAPE-DETERMINING

BACILLUS CEREUS

186-213

PROTEIN MREB

PMREC_BACSU
ROD SHAPE-DETERMINING

BACILLUS SUBTILIS

65-112

PROTEIN MREC

PMRKB_KLEPN
CHAPERONE PROTEIN MRKB

KLEBSIELLA PNEUMONIAE

198-232

PRECURSOR

PMRKC_KLEPN
MRKC PROTEIN PRECURSOR

KLEBSIELLA PNEUMONIAE

55-82
452-489
592-622

PMRKD_KLEPN
FIMBRIA ADHESION PROTEIN

KLEBSIELLA PNEUMONIAE

222-268

PRECURSOR

PMRKE_KLEPN
MRKE PROTEIN

KLEBSIELLA PNEUMONIAE

193-220

PMRP4_STRPY
FIBRINOGEN-/IG-BINDING

STREPTOCOCCUS PYOGENES

7-46
99-310

PROTEIN PRECURSOR

PMRP_STRSU
MURAMIDASE-RELEASED

STREPTOCOCCUS SUIS

75-102
130-177
261-291
421-448
507-534
588-622
773-800
1058-1085

PROTEIN PRECURSOR

PMSBA_ECOLI
PROB ATP-BINDING

ESCHERICHIA COLI

116-150
412-449

TRANSPORT PROTEIN MSBA

PMSRA_STAEP
ERYTHROMYCIN RESISTANCE

STAPHYLOCOCCUS EPIDERMIDIS

174-223
323-350

PROTEIN

PMSYB_ECOLI
ACIDIC PROTEIN MSYB

ESCHERICHIA COLI

73-100

PMT57_ECOLI
MODIFICATION METHYLASE

ESCHERICHIA COLI

250-284
474-544

ECO571

PMTA1_ACICA
MODIFICATION METHYLASE

ACINETOBACTER CALCOACETICUS

503-540

ACCI

PMTAB_SYNP2
MODIFICATION METHYLASE

SYNECHOCOCCUS SP
19-46

AQUI BETA SUBUNIT

PMTB1_BREEP
MODIFICATION METHYLASE

BREVIBACTERIUM EPIDERMIDIS

166-200
309-336

BEPI

PMTB1_HERAU
MODIFICATION METHYLASE

HERPETOSIPHON AURANTIACUS

281-308

HGIBI

PMTB2_BACAM
MODIFICATION METHYLASE

BACILLUS AMYLOLIQUEFACIENS

35-62

BAMHII

PMTB3_BACAR
MODIFICATION METHYLASE

BACILLUS ANEURINOLYTICUS

184-211

BANIII

PMTBA_BACAR
MODIFICATION METHYLASE

BACILLUS ANEURINOLYTICUS

121-148
382-409

BANI

PMTBB_BACSU
MODIFICATION METHYLASE

BACILLUS SUBTILIS

231-258
467-496

BSUBI

PMTBF_BACSU
MODIFICATION METHYLASE

BACILLUS SUBTILIS

208-235

BSUFI

PMTC1_CITFR
MODIFICATION METHYLASE

CITROBACTER FREUNDII

2-36
55-82
252-279

CFRBI

PMTC1_HERAU
MODIFICATION METHYLASE

HERPETOSIPHON AURANTIACUS

120-147

HGICI

PMTC2_HERAU
MODIFICATION METHYLASE

HERPETOSIPHON AURANTIACUS

281-311

HGICII

PMTE1_ECOLI
MODIFICATION METHYLASE

ESCHERICHIA COLI

76-110
145-172

ECORI

PMTE1_HERAU
MODIFICATION METHYLASE

HERPETOSIPHON AURANTIACUS

281-308

HGIEI

PMTE2_ECOLI
MODIFICATION METHYLASE

ESCHERICHIA COLI

4-61

ECORII

PMTE5_ECOLI
MODIFICATION METHYLASE

ESCHERICHIA COLI

73-100

ECO RV

PMTEC_ENTCL
MODIFICATION METHYLASE

ENTEROBACTER CLOACAE

418-445

ECIA

PMTF1_FLAOK
MODIFICATION METHYLASE

FLAVOBACTERIUM OKEANOKOITES

184-211
279-306
337-366
398-425
555-646

FOKI

PMTF1_FUSNU
MODIFICATION METHYLASE

FUSOBACTERIUM NUCLEATUM

22-49

FNUDI

PMTG2_HAEGA
MODIFICATION METHYLASE

HAEMOPHILUS GALLINARUM

135-165

HGAI-2

PMTH2_HAEIN
MODIFICATION METHYLASE

HAEMOPHILUS INFLUENZAE

181-208
399-426

HINCII

PMTHZ_METTF
MODIFICATION METHYLASE

METHANOBACTERIUM

188-215
296-323

MTHZI

THERMOFORMICICUM

PMTK1_KLEPN
MODIFICATION METHYLASE

KLEBSIELLA PNEUMONIAE

270-297

KPNI

PMTLD_STRMU
MANNITOL-1-PHOSPHATE 5-

STREPTOCOCCUS MUTANS

39-66
224-258
349-376

DEHYDROGENASE

PMTM1_MORSP
MODIFICATION METHYLASE

MORAXELLA SP
5-39
49-104

MSPI

PMTN3_NEILA
MODIFICATION METHYLASE

NEISSERIA LACTAMICA

124-158
183-210

NLAIII

PMTP2_PROVU
MODIFICATION METHYLASE

PROTEUS VULGARIS

308-335

PVU II

PMTPG_SULAC
MEMBRANE-ASSOCIATED

SULFOLOBUS ACIDOCALDARIUS

9-67

ATPASE

PMTPS_PROST
MODIFICATION METHYLASE

PROVIDENCIA STUARTII

226-264

PSTI

PMTR_ECOLI
TRYPTOPHAN-SPECIFIC

ESCHERICHIA COLI

80-107

TRANSPORT PROTEIN

PMTS1_STRSA
MODIFICATION METHYLASE

STREPTOCOCCUS SANGUIS

116-153
434-461
600-645

STSI

PMTS2_SHISO
MODIFICATION METHYLASE

SHIGELLA SONNEI

81-108

SSOII

PMTS9_STAAU
MODIFICATION METHYLASE

STAPHYLOCOCCUS AUREUS

233-274

SAU96I

PMTSA_LACLC
MODIFICATION METHYLASE

LACTOCOCCUS LACTIS

88-115
187-214

SCRFI-A

PMTSB_LACLC
MODIFICATION METHYLASE

LACTOCOCCUS LACTIS

27-61

SCRFI-B

PMTS1_SPISQ
CPG DNA METHYLASE

SPIROPLASMA SP
188-230
256-290

PMTSM_SERMA
MODIFICATION METHYLASE

SERRATIA MARCESCENS

61-88

SMAI

PMTT8_THETH
MODIFICATION METHYLASE

THERMUS AQUATICUS

120-157

TTHHB8I

PMTV1_VIBS3
MODIFICATION METHYLASE

VIBRIO SP
23-66

VSPI

PMUKB_ECOLI
MUKB PROTEIN

ESCHERICHIA COLI

320-381
1014-1048
1216-1252

PMULI_ERWAM
MAJOR OUTER MEMBRANE

ERWINIA AMYLOVORA

24-54

LIPOPROTEIN PREC

PMULI_MORMO
MAJOR OUTER MEMBRANE

MORGANELA MORGANII

27-54

LIPOPROTEIN PREC

PMULI_PROMI
MAJOR OUTER MEMBRANE

PROTEUS MIRABILIS

21-63

LIPOPROTEIN PREC

PMURD_BACSU
UDP-LIGASE

BACILLUS SUBTILIS

101-132
299-326

PMURE_ECOLI
LIGASE

ESCHERICHIA COLI

107-134

PMURF_ECOLI
UDP-MURNAC-PENTAPEPTIDE

ESCHERICHIA COLI

407-437

SYNTHETASE

PMURZ_ECOLI
ENOYLPYRUVATE

ESCHERICHIA COLI

392-419

TRANSFERASE

PMURZ_ENTCL
ENOYLPYRUVATE

ENTEROBACTER CLOACAE

392-419

TRANSFERASE

PMUTA_STRCM
METHYLMALONYL-COA

STREPTOMYCES CINNAMONENSIS

31-58

MUTASE BETA-SUBUNIT

PMUTB_PROFR
METHYLMALONYL-COA

PROPIONIBACTERIUM

549-576

MUTASE ALPHA-SUBUNIT

FREUDENREICHII

PMUTB_SALTY
/G-SPECIFIC ADENINE

SALMONELLA TYPHIMURIUM

273-300

GLYCOSYLASE

PMUTB_STRCM
METHYLMALONYL-COA

STREPTOMYCES CINNAMONENSIS

481-508

MUTASE ALPHA-SUBUNIT

PMUTL_ECOLI
DNA MISMATCH REPAIR

ESCHERICHIA COLI

80-114

PROTEIN MUTL

PMUTL_SALTY
DNA MISMATCH REPAIR

SALMONELLA TYPHIMURIUM

80-114

PROTEIN MUTL

PMUTL_VIBCH
PROTEIN MUTL

VIBRIO CHOLERAE

134-169

PMUTS_ECOLI
DNA MISMATCH REPAIR

ESCHERICHIA COLI

119-153

PROTEIN MUTS

PMUTT_STRAM
MUTT-LIKE PROTEIN

STREPTOMYCES AMBOFACIENS

60-87

PMVAA_PSEMV
COENZYME A REDUCTASE

PSEUDOMONAS MEVALONII

341-368

PMX_STRPY
M-RELATED PROTEIN

STREPTOCOCCUS PYOGENES

5-129
148-182
190-217
240-301

PRECURSOR

PMYCO_STRCI
MYCOLYSIN PRECURSOR

STREPTOMYCES CACAOI

300-352

PMYFC_YEREN
MYFC PROTEIN PRECURSOR

YERSINIA ENTEROCOLITICA

210-237

PNADC_SALTY
NICOTINATE-NUCLEOTIDE

SALMONELLA TYPHIMURIUM

123-154
255-289

PYROPHOSPHORYLASE

PNADR_SALTY
TRANSCRIPTIONAL

SALMONELLA TYPHIMURIUM

233-260

REGULATOR NADR

PNAGD_ECOLI
NAGD PROTEIN

ESCHERICHIA COLI

75-102

PNAGH_CLOPE
HYALURONOGLUCOS-

CLOSTRIDIUM PERFRINGENS

48-75
990-1017

AMINIDASE

PNAGR_ECOLI
NAGR PROTEIN

ESCHERICHIA COLI

119-153

PNANH_CLOSE
SIALIDASE PRECURSOR

CLOSTRIDIUM SEPTICUM

11-42
289-330
922-988

PNANH_CLOSO
SIALIDASE PRECURSOR

CLOSTRIDIUM SORDELLII

377-404

PNANH_SALTY
SIALIDASE

SALMONELLA TYPHIMURIUM

290-317

PNAPA_ENTHR
NA(+)/H(+) ANTIPORTER

ENTEROCOCCUS HIRAE

116-150

PNARG_ECOLI
RESPIRATORY NITRATE

ESCHERICHIA COLI

386-420

REDUCTASE ALPHA CHAIN

PNARL_ECOLI
REGULATOR PROTEIN NARL

ESCHERICHIA COLI

76-103

PNARP_ECOLI
REGULATOR PROTEIN NARP

ESCHERICHIA COLI

155-189

PNARX_ECOLI
NITRATE/NITRITE SENSOR

ESCHERICHIA COLI

220-247
358-385
431-458
505-538

PROTEIN NARX

PNDVA_RHIME
BETA-(1→2)GLUCAN EXPORT

RHIZOBIUM MELILOTI

212-239

PROTEIN

PNEOR_STRCY
NEOMYCIN RESISTANCE

STREPTOMYCES CYANOGENUS

348-375

PROTEIN

PNEUA_ECOLI
ACYLNEURAMINATE

ESCHERICHIA COLI

218-252
268-298

CYTIDYLYLTRANSFERASE

PNFRA_ECOLI
N4 ADSORPTION PROTEIN A

ESCHERICHIA COLI

490-517

PRECURSOR

PNFRB_ECOLI
N4 ADSORPTION PROTEIN B

ESCHERICHIA COLI

2-43
186-220
511-538

PNFRC_ECOLI
N4 ADSORPTION PROTEIN C

ESCHERICHIA COLI

315-342

PNFSI_ENTCL
NAD(P)H NITROREDUCTASE

ENTEROBACTER CLOACAE

9-36

PNHAA_ECOLI
NA(+)/H(+) ANTIPORTER 1

ESCHERICHIA COLI

206-233

PNHAB_ECOLI
NA(+)/H(+) ANTIPORTER 2

ESCHERICHIA COLI

271-305

PNHAB_PSECL
NITRILE HYDRATASE

PSEUDOMONAS CHLORORAPHIS

71-101

SUBUNIT BETA

PNHB1_RHORH
NITRILE HYDRATASE

RHODOCOCCUS RHODOCHROUS

63-93

SUBUNIT BETA

PNIFA_AZOBR
NIF-SPECIFIC REGULATORY

AZOSPIRILLUM BRASILENSE

7-44

PROTEIN

PNIFA_BRAJA
NIF-SPECIFIC REGULATORY

BRADYRHIZOBIUM JAPONICUM

252-279

PROTEIN

PNIFA_HERSE
NIF-SPECIFIC REGULATORY

HERBASPIRILLUM SEROPEDICAE

9-51
162-203
327-354

PROTEIN

PNIFA_RHILE
NIF-SPECIFIC REGULATORY

RHIZOBIUM LEGUMINOSARUM

100-127

PROTEIN

PNIFA_RHIME
NIF-SPECIFIC REGULATORY

RHIZOBIUM MELILOTI

171-198

PROTEIN

PNIFA_RHOCA
NIF-SPECIFIC REGULATORY

RHODOBACTER CAPSULATUS

260-287

PROTEIN

PNIFB_AZOVI
NIFB PROTEIN

AZOTOBACTER VINELANDII

342-369

PNIFB_KLEPN
NIFB PROTEIN

KLEBSIELLA PNEUMONIAE

154-181

PNIFD_ANASP
NITROG MOLYBD-IRON

ANABAENA SP
374-401

PROTEIN

PNIFD_AZOBR
NITROG MOLYBD-IRON

AZOSPIRILLUM BRASILENSE

377-404

PROTEIN

PNIFD_PLEBO
NITROG MOLYBD-IRON

PLECTONEMA BORYANUM

387-414

PROTEIN

PNIFD_THIFE
NITROG MOLYBD-IRON

THIOBACILLUS FERROOXIDANS

383-410

PROTEIN

PNIFE_CLOPA
BIOSYNTHESIS PROTEIN NIFE

CLOSTRIDIUM PASTEURIANUM

359-386

PNIFH_FRAGR
NITROGENASE IRON PROTEIN

FRANKIA SP
56-83

PNIFH_PLEBO
NITROGENASE IRON PROTEIN

PLECTONEMA BORYANUM

267-294

PNIFK_AZOBR
NITROG MOLYBD-IRON

AZOSPIRILLUM BRASILENSE

430-457

PROTEIN

PNIFK_BRAJA
NITROG MOLYBD-IRON

BRADYRHIZOBIUM JAPONICUM

483-510

PROTEIN

PNIFK_BRASP
NITROG MOLYBD-IRON

BRADYRHIZOBIUM SP
478-505

PROTEIN

PNIFK_CLOPA
NITROG MOLYBD-IRON

CLOSTRIDIUM PASTEURIANUM

227-254

PROTEIN

PNIFK_THIFE
NITROG MOLYBD-IRON

THIOBACILLUS FERROOXIDANS

479-506

PROTEIN

PNIFM_AZOCH
NIFM PROTEIN

AZOTOBACTER CHROOCOCCUM

265-292

MCD 1

PNIFN_BRAJA
BIOSYNTHESIS PROTEIN

BRADYRHIZOBIUM JAPONICUM

339-366

NIFN

PNIFS_ANASP
NIFS PROTEIN

ANABAENA SP
112-139

PNIFS_LACDE
NIFS PROTEIN HOMOLOG

LACTOBACILLUS DELBRUECKII

59-86

PNIFT_AZOVI
NIFT PROTEIN

AZOTOBACTER VINELANDII

6-33

PNIFU_ANASL
NIFU PROTEIN

ANABAENA SP
7-49

PNIFU_ANASP
NIFU PROTEIN

ANABAENA SP
148-178

PNIFU_KLEPN
NIFU PROTEIN

KLEBSIELLA PNEUMONIAE

66-93

PNIKA_ECOLI
NICKEL TRANSPORT PROTEIN

ESCHERICHIA COLI

122-149
282-309
456-483

NIKA PRECURSOR

PNIKE_ECOLI
NICKEL TRANSPORT PROTEIN

ESCHERICHIA COLI

177-204

NIKE

PNIRB_ECOLI
NITRITE REDUCTASE

ESCHERICHIA COLI

54-81
345-372

PNIRC_ECOLI
NIRC PROTEIN

ESCHERICHIA COLI

212-239

PNIRS_PSEST
PSEUDOMONAS CYTO-

PSEUDOMONAS STUTZERI

303-333

CHROME OXIDASE PRECURSO

PNISB_LACLA
117 KD MEMBRANE

LACTOCOCCUS LACTIS

202-229
287-332
663-697
886-902

ASSOCIATED PROTEIN

PNISC_LACLA
NISIN BIOSYNTHESIS

LACTOCUCCUS LACTIS

52-92
140-188

PROTEIN NISC

PNIST_LACLA
NISIN TRANSPORT PROTEIN

LACTOCOCCUS LACTIS

223-257
278-305
426-470

NIST

PNIVA_CLOPA
HOMOCITRATE SYNTHASE,

CLOSTRIDIUM PASTEURIANUM

100-127
234-268

ALPHA SUBUNIT

PNIVO_CLOPA
HOMOCITRATE SYNTHASE,

CLOSTRIDIUM PASTEURIANUM

63-94
103-132
213-240
283-310

OMEGA SUBUNIT

PNMPC_ECOLI
PORIN PROTEIN NMPC

ESCHERICHIA COLI

22-49
69-96
335-362

PRECURSOR

PNODC_BRASP
NODULATION PROTEIN C

BRADYRHIZOBIUM SP
3-30

PNODC_RHILO
NODULATION PROTEIN C

RHIZOBIUM LOTI

286-313

PNODC_RHILT
NODULATION PROTEIN C

RHIZOBIUM LEGUMINOSARUM

14-48

PNODF_RHILV
NODULATION PROTEIN F

RHIZOBIUM LEGUMINOSARUM

31-58

PNODF_RHIMS
NODULATION PROTEIN F

RHIZOBIUM MELILOTI

39-66

PNODG_RHIME
NODULATION PROTEIN G

RHIZOBIUM MELILOTI

8-35

PNODG_RHIMS
NODULATION PROTEIN G

RHIZOBIUM MELILOTI

8-35

PNODL_RHILV
NODULATION PROTEIN L

RHIZOBIUM LEGUMINOSARUM

26-53

PNODQ_AZOBR
NODULATION PROTEIN Q

AZOSPIRILLUM BRASILENSE

60-87

PNODT_RHILT
NODULATION PROTEIN T

RHIZOBIUM LEGUMINOSARUM

104-134
355-382
420-454

PNODT_RHILV
NODULATION PROTEIN T

RHIZOBIUM LEGUMINOSARUM

364-391
416-443

PNODU_RHIFR
NODULATION PROTEIN U

RHIZOBIUM FREDII

506-536

PNODV_BRAJA
NODULATION PROTEIN V

BRADYRHIZOBIUM JAPONICUM

378-419
739-766

PNODX_RHILV
NODULATION PROTEIN X

RHIZOBIUM LEGUMINOSARUM

232-259

PNOLB_RHIFR
NODULATION PROTEIN NOLB

RHIZOBIUM FREDII

133-160

PNOLR_RHIME
NODULATION PROTEIN NOLR

RHIZOBIUM MELILOTI

88-115

PNOSD_PSEST
NOSD PROTEIN PRECURSOR

PSEUDOMONAS STUTZERI

319-346

PNOSR_PSEST
REGULATORY PROTEIN NOSR

PSEUDOMONAS STUTZERI

127-154

PNOSZ_PSEAE
NITROUS-OXIDE REDUCTASE

PSEDOMONAS AERUGINOSA

267-294

PRECURSOR

PNOSZ_PSEST
NITROUS-OXIDE REDUCTASE

PSEUDOMONAS STUTZERI

557-591

PRECURSOR

PNPRE_BACAM
BACILLOLYSIN PRECURSOR

BACILLUS AMLOLIQUEFACIENS

113-147
217-244

PNPRE_BACPO
BACILLOLYSIN PRECURSOR

BACILLUS POLYMYXA

57-91
187-228

PNPRE_BACSU
BACILLOLYSIN PRECURSOR

BACILLUS SUBTILIS

116-146
307-334

PNQO5_PARDE
NADH-UBIQUINONE

PARACOCCUS DENITRIFICANS

4-45

OXIDOREDUCTASE 21 KD

CHAI

PNQO9_PARDE
NADH-UBIQUINONE

PARACOCCUS DENITRIFICANS

125-152

OXIDOREDUC 20 KD CHAIN

PNRDD_ECOLI
ANAER RIBONUC-TRIPHOS

ESCHERICHIA COLI

91-125

REDUCTASE

PNRFA_ECOLI
CYTOCHROME C552

ESCHERICHIA COLI

319-346

PRECURSOR

PNRFG_ECOLI
NRFG PROTEIN

ESCHERICHIA COLI

72-111

PNRL1_RHORH
ALIPHATIC NITRILASE

RHODOCOCCUS RHODOCHROUS

109-136

PNSR_LACLA
NISIN-RESISTANCE PROTEIN

LACTOCOCCUS LACTIS

52-79
135-162

PNTCA_ANASP
DNA-BINDING PROTEIN VF1

ANABAENA SP
65-92

PNTCA_SYNP7
GLOBAL NITROGEN

SYNECHOCOCCUS SP
44-91

REGULATOR

PNTCA_SYNP3
GLOBAL NITROGEN

SYNECHOCYSTIS SP
67-94

REGULATOR

PNTRB_VIBAL
NITROGEN REGULATION

VIBRIO ALGINOLYTICUS

194-223

PROTEIN NTRB

PNTRC_PROVU
NITROGEN REGULATION

PROTEUS VULGARIS

385-412

PROTEIN NR

PNTRC_RHIME
NITROGEN ASSIMILATION

RHIZOBIUM MELILOTI

451-478

REGULATORY PROTEIN

PNU2C_SYNP7
NADH-PLASTOQUINONE

SYNECHOCOCCUS SP
80-107

OXIDOREDUCTASE CHAIN

PNU4C_SYNY3
NADH-PLASTOQUINONE

SYNECHOCYSTIS SP
27-54

OXIDOREDUCTASE CHAIN

PNU5C_SYNP2
NADH-PLASTOQUINONE

SYNECHOCOCCUS SP
614-641

OXIDOREDUCTASE CHAIN

PNUJC_SYNY3
PROB NADH-UBIQUINONE

SYNECHOCYSTIS SP
163-190

OXIDOREDUCTASE SUBU

PNUKC_SYNY3
PROB NADH-UBIQUINONE

SYNECHOCYSTIS SP
169-199

OXIDOREDUCTASE SUBU

PNULX_SYNY3
NADH-PLASTOQUINONE

SYNECHOCYSTIS SP
46-80

OXIDOREDUCTASE CHAIN

PNUOG_ECOLI
NADH DEHYDROGENASE I

ESCHERICHIA COLI

368-402

CHAIN G

PNUOL_ECOLI
NADH DEHYDROGENASE I

ESCHERICHIA COLI

30-57
496-523

CHAIN L

PNUON_ECOLI
NADH DEHYDROGENASE I

ESCHERICHIA COLI

392-419

CHAIN N

PNUPC_ECOLI
NUCLEOTIDE PERMEASE

ESCHERICHIA COLI

13-43
134-164
356-383

PNUSA_ECOLI
NUSA PROTEIN

ESCHERICHIA COLI

21-62

PNUSB_ECOLI
N UTILIZATION SUBSTANCE

ESCHERICHIA COLI

17-65
70-97

PROTEIN B

PNUSG_ECOLI
TRANSCRIPTION ANTI-

ESCHERICHIA COLI

141-168

TERMINATION PROTEIN NUS

PNUSG_THEMA
TRANSCRIPTION ANTI-

THERMOTOGA MARITIMA

203-230

TERMINATION PROTEIN NUS

PNYLB_FLASP
6-AMINOHEXANOATE-DIMER

FLAVOBACTERIUM SP
223-250

HYDROLASE

PNYLC_FLASP
6-AMINOHEXANOATE-DIMER

FLAVOBACTERIUM SP
223-250

HYDROLASE

PO16G_BACCE
OLIGO-1,6-GLUCOSIDASE

BACILLUS CEREUS

301-328

POCCT_AGRT6
OCTOPINE-BINDING PROTEIN

AGROBACTERIUM TUMEFACIENS

172-202

T PRECURSOR

PODO1_AZOVI
2-OXOGLUTARATE

AZOTOBACTER VINELANDII

829-856

DEHYDROGENASE E1

COMPONE

PODO1_BACSU
2-OXOGLUTARATE

BACILLUS SUBTILIS

487-524
809-850

DEHYDROGENASE E1

COMPONE

PODO1_ECOLI
2-OXOGLUTARATE

ESCHERICHIA COLI

6-33

DEHYDROGENASE E1

COMPONE

PODO2_BACSU
DIHYDROLIPOAMIDE SUC-

BACILLUS SUBTILIS

30-60

TRANSF COMP

PODOB_PSEPU
2-OXOGLUTARATE

PSEUDOMONAS PUTIDA

223-254

DEHYDROGENASE E1

COMPONE

PODP1_ECOLI
PYRUVATE DEHYDRO-

ESCHERICHIA COLI

624-651

GENASE E1 COMPONENT

PODP2_AZOVI
DIHYDROLIPOAMIDE

AZOTOBACTER VINELANDII

518-545

ACETRANS COMP

PODP2_ECOLI
DIHYDROLIPOAMIDE

ESCHERICHIA COLI

14-41
117-144

ACETRANS COMP

PODPA_BACST
PYRUVATE DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

299-333

GENASE E1 COMPONENT

PODPA_BACSU
PYRUVATE DEHYDRO-

BACILLUS SUBTILIS

305-332

GENASE E1 COMPONENT

PODPB_BACST
PYRUVATE DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

23-50

GENASE E1 COMPONENT

PODPB_BACSU
PYRUVATE DEHYDRO-

BACILLUS SUBTILIS

16-50

GENASE E1 COMPONENT

POM1E_CHLTR
15 KD CYSTEINE-RICH

CHLAMYDIA TRACHOMATIS

38-65

PROTEIN, SEROVAR E

POMA1_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

63-90

P1 A PRECURSOR

POMA1_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

359-386

P1 A PRECURSOR

POMA2_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

353-380

P1 A PRECURSOR

POMB1_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

63-90

P 1B PRECURSOR

POMB1_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

63-90

P.IB PRECURSOR

POMB2_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

63-90

P.IB PRECURSOR

POMB2_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

63-90

P.IB PRECURSOR

POMB3_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

63-90

P.IB PRECURSOR

POMB4_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

24-51
63-90

P.IB PRECURSOR

POMB_NEILA
OUTER MEMBRANE PROTEIN

NEISSERIA LACTAMICA

116-143

P.IB PRECURSOR

POMB_NEISI
OUTER MEMBRANE PROTEIN

NEISSERIA SICCA

24-51
63-90

P.IB PRECURSOR

POMLA_ACTPL
OUTER MEMBRANE LIPO-

ACTINOBACILLUS

114-151

PROTEIN PRECURSOR

PLEUROPNEUMONIAE

POMP1_HAEIN
OUTER MEMBRANE PROTEIN

HAEMOPHILUS INFLUENZAE

154-184
303-330
341-368

P1 PRECURSOR

POMP2_HAEIN
OUTER MEMBRANE PROTEIN

HAEMOPHILUS INFLUENZAE

16-71
220-254
326-353

P2 PRECURSOR

POMP3_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

14-41

P.III PRECURSOR

POMP7_STAAU
70 KD OUTER MEMBRANE

STAPHYLOCOCCUS AUREUS

53-80
88-115

PROTEIN PRECURSOR

POMPA_THEMA
OUTER MEMBRANE PROTEIN

THERMOTOGA MARITIMA

100-138
151-178
183-249
255-292
301-328
351-385

ALPHA PRECURSOR

POMPC_ECOLI
OUTER MEMBRANE PROTEIN

ESCHERICHIA COLI

20-47
64-94

C PRECURSOR

POMPC_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

89-123

P.IIC PRECURSOR

POMPC_SALTI
OUTER MEMBRANE PROTEIN

SALMONELLA TYPHI

166-193

C PRECURSOR

POMPF_ECOLI
OUTER MEMBRANE PROTEIN

ESCHERICHIA COLI

21-55
231-258

F PRECURSOR

POMPH_PHOS9
OMPH PROTEIN

PHOTOBACTERIUM SP
292-319

POMPT_ECOLI
PROTEASE VII PRECURSOR

ESCHERICHIA COLI

37-64

POP65_NEIGO
OPACITY PROTEIN OPA65

NEISSERIA GONORRHOEAE

71-111

POP67_NEIGO
OPACITY PROTEIN OPA67

NEISSERIA GONORRHOEAE

72-109

POPAA_NEIGO
OPACITY PROTEIN OPA53

NEISSERIA GONORRHOEAE

71-123
140-167

POPAG_NEIGO
OPACITY PROTEIN OPA52

NEISSERIA GONORRHOEAE

80-107
140-167

POPAI_NEIGO
OPACITY PROTEIN OPA54

NEISSERIA GONORRHOEAE

80-107

POPAJ_NEIGO
OPACITY PROTEIN OPA58

NEISSERIA GONORRHOEAE

71-105

POPAK_NEIGO
OPACITY PROTEIN OPA57

NEISSERIA GONORRHOEAE

71-105

POPDA_ECOLI
OLIGOPEPTIDASE A

ESCHERICHIA COLI

147-174

POPDA_SALTY
OLIGOPEPTIDASE A

SALMONELLA TYPHIMURIUM

147-174

POPDE_PSEAE
TRANSCRIPTION FACTOR

PSEUDOMONAS AUREGINOSA

64-91

OPDE

POPPA_ECOLI
OLIGOPEPTIDE-BINDING

ESCHERICHIA COLI

402-432

PROTEIN PRECURSOR

POPPB_SALTY
OLIGOPEPTIDE PERMEASE

SALMONELLA TYPHIMURIUM

265-299

PROTEIN OPPB

POPR1_NEIME
OPACITY-RELATED PROTEIN

NEISSERIA MENINGITIDIS

108-135

POMP1

POPR3_NEIME
OPACITY-RELATED PROTEIN

NEISSERIA MENINGITIDIS

94-135

POMP3

POSMC_ECOLI
OSMOTICALLY INDUCIBLE

ESCHERICHIA COLI

5-32

PROTEIN OSMC

POSPA_BORBU
OUTER SURFACE PROTEIN A

BORRELIA BURGDORFERI

63-100
112-139
157-204
223-271

PRECURSOR

POSPB_BORBU
OUTER SURFACE PROTEIN B

BORRELIA BURGDORFERI

113-259
262-296

PRECURSOR

POTC2_BACSU
ORNITHINE CARBAMOYL-

BACILLUS SUBTILIS

188-215

TRANSFERASE

POTCC_PSEAE
ORNITHINE CARBAMOYL-

PSEUDOMONAS AERUGINOSA

17-44

TRANSFERASE

POTCC_PSEPU
ORNITHINE CARBAMOYL-

PSEUDOMONAS PUTIDA

3-33

TRANSFERASE

POUTB_BACSU
SPORE OUTGROWTH FACTOR

BACILLUS SUBTILIS

225-252

B

POUTO_ERWCA
LEADER PEPTIDASE

ERWINIA CAROTOVORA

189-216

PP18K_STRPA
18 KD PROTEIN IN FIMA

STREPTOCOCCUS PARASANGUIS

115-149

3′ REGION

PP18K_STRSA
18 KD PROTEIN IN SSAB

STREPTOCOCCUS SANGUIS

10-37
114-148

3′ REGION

PP1P_LACLC
P1-TYPE PROTEINASE

LACTOCOCCUS LACTIS

107-155
904-950
1073-1100
1223-1250
1466-1496
1625-1655

PRECURSOR

PP29_MYCHR
PROTEIN P29

MYCOPLASMA HYORHINIS

5-56
101-160
202-246

PP2P_LACLA
PII-TYPE PROTEINASE

LACTOCOCCUS LACTIS

107-155
904-950
1073-1100
1223-1250
1446-1496
1625-1689

PRECURSOR

PP2P_LACPA
II-TYPE PROTEINASE

LACTOBACILLUS PARACASEI

107-155
904-941
1073-1100
1223-1250
1446-1496
1628-1655

PRECURSOR

PP30_ECOLI
P30 PROTEIN

ESCHERICHIA COLI

55-82

PP34_RICRI
PROTEIN P34

RICKETTSIA RICKETTSII

9-47
135-173

PP37_MYCHR
PROTEIN P37 PRECURSOR

MYCOPLASMA HYORHINIS

38-75

PP3P_LACLC
PIII-TYPE PROTEINASE

LACTOCOCCUS LACTIS

107-155
904-950
1073-1100
1223-1250
1446-1496
1628-1655

PRECURSOR

PP47K_PSECL
47 KD PROTEIN

PSEUDOMONAS CHLORORAPHIS

288-315

PP54_ENTFC
P54 PROTEIN PRECURSOR

ENTEROCOCCUS FAECIUM

58-92
141-209

PP60_LISGR
PROTEIN P60 PRECURSOR

LISTERIA GRAYI

31-61
101-142
300-334
431-458

PP60_LISIN
PROTEIN P60 PRECURSOR

LISTERIA INNOCUA

67-94
102-143

PP60_LISIV
PROTEIN P60 PRECURSOR

LISTERIA IVANOVII

101-140
315-359

PP60_LISMO
PROTEIN P60 PRECURSOR

LISTERIA MONOCYTOGENES

103-144

PP60_LISSE
PROTEIN P60 PRECURSOR

LISTERIA SEELIGERI

101-140
270-298
321-365
395-422

PP60_LISWE
PROETIN P60 PRECURSOR

LISTERIA WELSHIMERI

113-140
317-361
396-423

PP69_MYCHR
PROTEIN P69

MYCOPLASMA HYORHINIS

264-295
421-464
487-517
544-575

PPABA_BACSU
ADC SYNTHASE

BACILLUS SUBTILIS

12-41

PPABC_BACSU
4-AMINO-4-

BACILLUS SUBTILIS

250-277

DEOXYCHORISMATE LYASE

PPABC_ECOLI
4-AMINO-4-

ESCHERICHIA COLI

140-167

DEOXYCHORISMATE LYASE

PPABL_STRGR
PROTEIN Y

STREPTOMYCES GRISEUS

52-79

PPAC_ARTVI
PENICILLIN ACYLASE

ARTHROBACTER VISCOSUS

170-197
333-363
571-606
640-674

PRECURSOR

PPAC_BACSH
PENICILLIN ACYLASE

BACILLUS SPHAERICUS

232-259

PPAC_STRMU
PAC PROTEIN PRECURSOR

STREPTOCOCCUS MUTANS

146-276
281-465
538-565
576-630
1075-1102
1159-1186
1381-1434

PPAI1_BACSU
REGULATORY PROTEIN PAI 1

BACILLUS SUBTILIS

103-137

PPAI2_BACSU
REGULATORY PROTEIN PAI 2

BACILLUS SUBTILIS

145-172

PPAPE_ECOLI
FIMBRIAL PROTEIN PAPE

ESCHERICHIA COLI

42-69
86-123

PPAPF_ECOLI
MINOR FIMBRIAL PROTEIN

ESCHERICHIA COLI

4-31

PAPF

PPAPG_ECOLI
FIMBRIAL PROTEIN PAPG

ESCHERICHIA COLI

282-316

PRECURSOR

PPARA_AGRTU
PARA PROTEIN

AGROBACTERIUM TUMEFACIENS

60-87

PPARB_ECOLI
PLASMID PARTITION PAR B

ESCHERICHIA COLI

117-154
249-283

PROTEIN

PPARE_ECOLI
TOPOISOMERASE IV SUBUNIT

ESCHERICHIA COLI

444-471
526-553

B

PPARE_SALTY
TOPOISOMERASE IV SUBUNIT

SALMONELLA TYPHIMURIUM

444-471
526-553

B

PPA_BACAN
PROTECTIVE ANTIGEN

BACILLUS ANTHRACIS

13-52
125-152
296-335
585-615
650-684

PRECURSOR

PPBP2_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

95-122
178-205
207-241

PROTEIN 2

PPPB2_NEIGO
PENICILLIN-BINDING

NEISSERIA GONORRHOEAE

193-220

PROTEIN 2

PPBP2_NEIME
PENICILLIN-BINDING

NEISSERIA MENINGITIDIS

193-220

PROTEIN 2

PPBP2_STRPN
PENICILLIN-BINDING

STREPTOCOCCUS PNEUMONIAE

144-183
216-243
259-286
605-632

PROTEIN 2B

PPBP3_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

224-251
334-368

PROTEIN 3 PRECURSOR

PPBP4_BACSU
PENICILLIN-BINDING

BACILLUS SUBTILIS

374-401

PROTEIN 4°

PPBP4_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

336-363

PROTEIN 4 PRECURSOR

PPBPA_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

145-172

PROTEIN 1A

PPBPB_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

62-96
263-290

PROTEIN 1B

PPBPX_STRPN
PENICILLIN-BINDING

STREPTOCOCCUS PNEUMONIAE

89-116
706-733

PROTEIN 2X

PPBP_STAAU
PENICILLIN-BINDING

STAPHYLOCOCCUS AUREUS

78-108
176-203
263-324
502-529

PROTEIN

PPCAB_PSEPU
CYCLOISOMERASE

PSEUDOMONAS PUTIDA

115-142
226-253

PPEL3_ERWCA
PECTATE LYASE III

ERWINIA CAROTOVORA

110-137

PRECURSOR

PPELA_ERWCA
PECTATE LYASE A

ERWINIA CAROTOVORA

110-137

PRECURSOR

PPELB_ERWCA
PECTATE LYASE B

ERWINIA CAROTOVORA

110-137

PRECURSOR

PPELC_ERWCA
PECTATE LYASE C

ERWINIA CAROTOVORA

110-137

PRECURSOR

PPELF_ERWCH
PECTATE LYASE E

ERWINIA CHRYSANTHEMI

40-67
209-243

PRECURSOR

PPELP_ERWCA
PERIPLASMIC PECTATE

ERWINIA CAROTOVORA

455-482

LYASE PRECURSOR

PPELP_YERPS
PERIPLASMIC PECTATE

YERSINIA PSEUDOTUBERCULOSIS

459-489

LYASE PRECURSOR

PPELX_ERWCA
PUTATIVE PECTATE LYASE X

ERWINIA CAROTOVORA

188-218

PRECURSOR

PPELX_ERWCH
EXOPOLYGALACTURONATE

ERWINIA CHRYSANTHEMI

466-493

LYASE PRECURSOR

PPEPD_ECOLI
AMINOACYL-HISTIDINE

ESCHERICHIA COLI

264-314

DIPEPTIDASE

PPEPQ_ECOLI
X-PRO DIPEPTIDASE

ESCHERICHIA COLI

251-278

PPERT_BORBR
PERTACTIN PRECURSOR

BORDETELLA BRONCHISEPTICA

617-644

PPERT_BORPA
PERTACTIN PRECURSOR

BORDETELLA PARAPERTUSSIS

628-655

PPERT_BORPE
PERTACTIN PRECURSOR

BORDETELLA PERTUSSIS

616-643

PPGK_CORGL
PHOSPHOGLYCERATE

CORYNEBACTERIUM GLUTMICUM

83-117

KINASE

PPGK_ECOLI
PHOSPHOGLYCERATE

ESCHERICHIA COLI

186-216

KINASE

PPGK_METBR
PHOSPHOGLYCERATE

METHANOBACTERIUM BRYANTII

36-63

KINASE

PPGK_THETH
PHOSPHOGLYCERATE

THERMUS AQUATICUS

222-249

KINASE

PPGL1_ERWCA
ENDO-POLYGALACTURO-

ERWINIA CAROTOVORA

237-271

NASE PRECURSOR

PPGTE_SALTY
OUTER MEMBRANE

SALMONELLA TYPHIMURIUM

66-93

PROTEASE E PRECURSOR

PPHA1_FREDI
C-PHYCOCYANIN-1 ALPHA

FREMYELLA DIPLOSIPHON

21-48

CHAIN

PPHA2_FREDI
C-PHYCOCYANIN-2 ALPHA

FREMYELLA DIPLOSIPHON

21-48

CHAIN

PPHAA_PSEOL
POLY(3-HYDROXY-

PSEUDOMONAS OLEOVORANS

264-291

ALKANOATE) POLYMERASE 1

PPHAB_ANACY
ALLOPHYCOCYANIN BETA

ANABAENA CYLINDRICA

7-48

CHAIN

PPHAB_ANAVA
ALLOPHYCOCYANIN BETA

ANABAENA VARIABILIS

14-48

CHAIN

PPHAB_FREDI
ALLOPHYCOCYANIN BETA

FREMYELLA DIPLOSIPHON

8-49

CHAIN

PPHAB_MASLA
ALLOPHYCOCYANIN BETA

MASTIGOCLADUS LAMINOSUS

14-41

CHAIN

PPHAB_SYNP6
ALLOPHYCOCYANIN BETA

SYNECHOCOCCUS SP
14-41

CHAIN

PPHAC_SYNP6
ALLOPHYCOCYANIN ALPHA-

SYNECHOCOCCUS SP
33-60

B CHAIN

PPHAG_FREDI
ALLOPHYCOCYANIN GAMMA

FREMYELLA DIPLOSIPHON

32-59

CHAIN

PPHB3_FREDI
C-PHYCOCYANIN-3 BETA

FREMYELLA DIPLOSIPHON

29-56

CHAIN

PPHBB_ALCEU
ACETOACETYL-COA

ALCALIGENES EUTROPHUS

55-85

REDUCTASE

PPHCA_SYNY1
C-PHYCOCYANIN ALPHA

SYNECHOCYSTIS SP
21-55

CHAIN

PPHCB_SYNP6
C-PHYCOCYANIN BETA

SYNECHOCOCCUS SP
28-55

CHAIN

PPHCB_SYNP7
C-PHYCOCYANIN BETA

SYNECHOCOCCUS SP
28-55

CHAIN

PPHCB_SYNY1
C-PHYCOCYANIN BETA

SYNECHOCYSTIS SP
21-55

CHAIN

PPHEA_ECOLI
CHORISMATE MUTASE

ESCHERICHIA COLI

10-37

PPHEA_ERWHE
CHORISMATE MUTASE

ERWINIA HERBICOLA

10-37
159-186
252-286

PPHEA_PSESP
PHENOL 2-MONOOXYGENASE

PSEUDOMONAS SP
171-201
282-314
437-464

PPHEB_MASLA
PHYCOERYTHROCYANIN

MASTIGOCLADUS LAMINOSUS

21-62

BETA CHAIN

PPHEB_PSESP
CATHECHOL 1,2-

PSEUDOMONAS SP
24-51

DIOXYGENASE

PPHEG_SYNPY
LINKER POLYPEPTIDE

SYNECHOCOCCUS SP
158-185

PPHEP_ECOLI
PHENYLALANINE-SPECIFIC

ESCHERICHIA COLI

284-311

PERMEASE

PPHF1_CLOPA
PERIPLASMIC [FE]

CLOSTRIDIUM PASTEURIANUM

434-471

HYDROGENASE 1

PPHL1_BACCE
SPHINGOMYELINASE C

BACILLUS CEREUS

2-36

PRECURSOR

PPHL2_BACCE
SPHINGOMYELINASE C

BACILLUS CEREUS

2-36

PRECURSOR

PPHL3_BACCE
SPHINGOMYELINASE C

BACILLUS CEREUS

2-36

PRECURSOR

PPHLC_BACCE
PHOSPHOLIPASE C

BACILLUS CEREUS

32-59
179-206

PRECURSOR

PPHLC_CLOBI
PHOSPHOLIPASE C

CLOSTRIDIUM BIFERMENTANS

50-77
335-365

PRECURSOR

PPHLC_CLOPE
PHOSPHOLIPASE C

CLOSTRIDIUM PERFRINGENS

210-237
369-398

PRECURSOR

PPHLC_LISMO
PHOSPHOLIPASE C

LISTERIA MONOCYTOGENES

147-174

PRECURSOR

PPHLC_PSEAE
HEMOLYTIC PHOSPHOLIPASE

PSEUDOMONAS AERUGINOSA

685-712

C PRECURSOR

PPHLC_STAAU
PHOSPHOLIPASE C

STAPHYLOCOCCUS AUREUS

6-33

PRECURSOR

PPHLD_BACCE
PHOSPHOLIPASE C

BACILLUS CEREUS

179-206

PRECURSOR

PPHL_LEPIN
SPHINGOMYELINASE C

LEPTOSPIRA INTERROGANS

30-57
394-428

PRECURSOR

PPHND_ECOLI
PHND PROTEIN

ESCHERICHIA COLI

296-326

PPHNK_ECOLI
PHNK PROTEIN

ESCHERICHIA COLI

178-205

PPHNM_ECOLI
PHNM PROTEIN

ESCHERICHIA COLI

5-35

PPHOE_CITFR
OUTER MEMBRANE PORE

CITROBACTER FREUNDII

13-40
47-105

PROTEIN E PRECURSOR

PPHOE_ECOLI
OUTER MEMBRANE PORE

ESCHERICHIA COLI

13-40
64-105
168-195
226-253

PROTEIN E PRECURSOR

PPHOE_KLEOX
OUTER MEMBRANE PORE

KLEBSIELLA OXYTOCA

13-40
64-91

PROTEIN E PRECURSOR

PPHOE_KLEPN
OUTER MEMBRANE PORE

KLEBSIELLA PNEUMONIAE

13-40
64-105

PROTEIN E PRECURSOR

PPHOE_SALTY
OUTER MEMBRANE PORE

SALMONELLA TYPHIMURIUM

63-104
320-347

PROTEIN E PRECURSOR

PPHOP_BACSU
ALK PHOS SYNTHESIS

BACILLUS SUBTILIS

185-219

TRANS REG PROTEIN

PPHOQ_ECOLI
SENSOR PROTEIN PHOQ

ESCHERICHIA COLI

244-278

PPHOQ_SALTY
VIRULENCE SENSOR PROTEIN

SALMONELLA TYPHIMURIUM

226-260

PHOQ

PPHOR_BACSU
ALK PHOS SYNTHESIS

BACILLUS SUBTILIS

89-145
387-425

SENSOR PROTEIN PHOR

PPHRA_ECOLI
PHOTOREPAIR PROTEIN

ESCHERICHIA COLI

63-90
207-241

PHRA

PPHRA_SYNPY
R-PHYCOCYANIN II ALPHA

SYNECHOCOCCUS SP
20-47

CHAIN

PPHRA_SYNPZ
R-PHYCOCYANIN II ALPHA

SYNECHOCOCCUS SP
20-47

CHAIN

PPHSG_ECOLI
GLYCOGEN PHOSPHORYLASE

ESCHERICHIA COLI

157-184
488-515

PPHSM_ECOLI
MALTODEXTRIN

ESCHERICHIA COLI

71-108

PHOSPHORYLASE

PPILA_NEIGO
PROB SIGNAL RECOGNITION

NEISSERIA GONORRHOEAE

17-68

PARTICLE PROTEIN

PPILB_PSEAE
FIMBRIAL ASSEMBLY

PSEUDOMONAS AERUGINOSA

16-60

PROTEIN PILB

PPILC_PSEAE
PILC PROTEIN

PSEUDOMONAS AERUGINOSA

143-170

PPILD_NEIGO
LEADER PEPTIDASE

NEISSERIA GONORRHOEAE

110-137

PPILQ_PSEAE
FIMBRIAL ASSEMBLY

PSEUDOMONAS AERUGINOSA

71-115
639-666

PROTEIN PILQ PRECURSOR

PPILS_PSEAE
SENSOR PROTEIN PILS

PSEUDOMONAS AERUGINOSA

9-46

PPIR_ECOLI
P1 PROTEIN

ESCHERICHIA COLI

156-188

PPIV_MORBO
PILIN GENE INVERTING

MORAXELLA BOVIS

42-69
152-182

PROTEIN

PPIV_MORLA
PILIN GENE INVERTING

MORAXELLA LACUNATA

152-182

PROTEIN

PPLC_BACCE
PHOSPHODIESTERASE

BACILLUS CEREUS

217-245

PRECURSOR

PPLC_BACTU
PHOSPHODIESTERASE

BACILLUS THURINGIENSIS

216-245

PRECURSOR

PPLC_LISMO
PHOSPHODIESTERASE

LISTERIA MONOCYTOGENES

238-265

PRECURSOR

PPLSC_ECOLI
ACYLTRANSFERASE

ESCHERICHIA COLI

106-133

PPLSX_ECOLI
PLSX PROTEIN

ESCHERICHIA COLI

241-270

PPLYD_ERWCA
PECTIN LYASE

ERWINIA CAROTOVORA

27-92

PPMBA_ECOLI
PMPA PROTEIN

ESCHERICHIA COLI

9-50

PPME_ERWCH
PECTINESTERASE

ERWINIA CHRYSANTHEMI

60-87

PRECURSOR

PPMGY_ECOLI
PHOSPHOGLYCERATE

ESCHERICHIA COLI

82-116

MUTASE

PPMGY_ZYMM
PHOSPHOGLYCERATE

ZYMOMONAS MOBILIS

13-40
80-110

MUTASE

PPNP_ECOLI
POLYRIBONUC

ESCHERICHIA COLI

260-294

NUCLEOTIDYLTRANSF

PPNUC_SALTY
PNUC PROTEIN

SALMONELLA TYPHIMURIUM

178-205

PPODK_BACSY
PYRUVATE, ORTHO-

BACTEROIDES SYMBIOSUS

51-78

PHOSPHATE DIKINASE

PPORF_PSESY
OUTER MEMBRANE PORIN

PSEUDOMONAS SYRINGAE

111-138

F PRECURSOR

PPORO_PSEAE
PORIN O PRECURSOR

PSEUDOMONAS AERUGINOSA

390-424

PPORP_PSEAE
PORIN P PRECURSOR

PSEUDOMONAS AERUGINOSA

139-181
260-287
369-396

PPOTD_ECOLI
BINDING PROTEIN

ESCHERICHIA COLI

320-347

PRECURSOR

PPOTE_ECOLI
PUTRESCINE-ORNITHINE

ESCHERICHIA COLI

91-118

ANTIPORTER

PPOXB_ECOLI
PYRUVATE DEHYDRO-

ESCHERICHIA COLI

8-38

GENASE

PPPB3_BACSU
ALKALINE PHOSPHATASE III

BACILLUS SUBTILIS

109-150
433-460

PRECURSOR

PPPB4_BACSU
ALKALINE PHOSPHATASE IV

BACILLUS SUBTILIS

85-123
336-363

PRECURSOR

PPPB_ECOLI
ALKALINE PHOSPHATASE

ESCHERICHIA COLI

235-262

PRECURSOR

PPPB_ESCFE
ALKALINE PHOSPHATE

ESCHERICHIA FERGUSONII

236-263

PRECURSOR

PPPCE_FLAME
PROLYL ENDOPEPTIDASE

FLAVOBACTERIUM

158-199

PRECURSOR

MENINGOSEPTICUM

PPPCF_FLAME
PROLYL ENDOPEPTIDASE

FLAVOBACTERIUM

158-199
256-283

PRECURSOR

MENINGOSEPTICUM

PPPCK_ECOLI
PHOSPHOENOLPYRUVATE

ESCHERICHIA COLI

45-72

CARBOXYKINASE

PPPDA_CLOPE
PROTEIN A PRECURSOR

CLOSTRIDIUM PERFRINGENS

73-107

PPPSA_ECOLI
PHOSPHOENOLPYRUVATE

ESCHERICHIA COLI

49-76

SYNTHASE

PPQQ2_ACICA
COENZYME PQQ SYNTHESIS

ACINETOBACTER CALCOACETICUS

40-74

PROTEIN II

PPRCA_ANAVA
CALCIUM DEPENDENT

ANABAENA VARIABILIS

371-398

PROTEASE PRECURSOR

PPRCA_THEAC
PROTEASOME, ALPHA

THERMOPLASMA ACIDOPHILUM

88-115

SUBUNIT

PPRC_ECOLI
TAIL-SPECIFIC PROTEASE

ESCHERICHIA COLI

158-192
366-393

PRECURSOR

PPRE1_STAAU
PLASMID RECOMBINATION

STAPHYLOCOCCUS AUREUS

27-78
152-179
264-347

ENZYME

PPRE2_STAAU
PLASMID RECOMBINATION

STAPHYLOCOCCUS AUREUS

48-75
181-208
310-361
366-393

ENZYME

PPREA_LACPL
PLASMID RECOMBINATION

LACTOBACILLUS PLANTARUM

37-71
291-318

ENZYME

PPRE_BACLI
REGULATORY PROTEIN

BACILLUS LICHENIFORMIS

2-40

PPRE_BACSP
PLASMID RECOMBINATION

BACILLUS SP
181-224
288-345

ENZYME

PPRE_STRAG
PLASMID RECOMBINATION

STREPTOCOCCUS AGALACTIAE

285-319
332-359
420-454

ENZYME

PPRFA_LISMO
LISTERIOLYSIN REGULA-

LISTERIA MONOCYTOGENES

76-110
173-204

TORY PROTEIN

PPRIA_ECOLI
PRIMOSOMAL PROTEIN N′

ESCHERICHIA COLI

218-245

PPRIM_BACSU
DNA PRIMASE

BACILLUS SUBTILIS

383-433

PPRIM_BUCAP
DNA PRIMASE

BUCHNERA APHIDICOLA

13-43
282-319

PPRIM_CLOAB
DNA PRIMASE

CLOSTRIDIUM ACETOBUTYLICUM

87-114

PPRIM_LACLA
DNA PRIMASE

LACTOCOCCUS LACTIS

269-296

PPRIM_RICPR
DNA PRIMASE

RICKETTSIA PROWAZEKII

10-37
245-286
477-504
526-593

PPRIS_DESDE
PRISMANE PROTEIN

DESULFOVIBRIO DESULFURICANS

30-57

PPRLB_ACHLY
BETA-LYTIC METALLOENDO-

ACHROMOBACTER LYTICUS

317-344

PEPTIDASE

PPRLB_LYSEN
BETA-LYTIC METALLOENDO-

LYSOBACTER ENZYMOGENES

121-148

PEPTIDASE

PPRO1_LISMO
ZINC METALLOPROTEINASE

LISTERIA MONOCYTOGENES

111-145
275-316

PRECURSOR

PPRO2_LISMO
ZINC METALLOPROTEINASE

LISTERIA MONOCYTOGENES

111-145

PRECURSOR

PPROA_SERMA
GAMMA-GLUTAMYL

SERRATIA MARCESCENS

309-336

PHOSPHATE REDUCTASE

PPROA_STAAU
PROTEIN A PRECURSOR

STAPHYLOCOCCUS AUREUS

2-29

PPROB_SERMA
GLUTAMATE 5-KINASE

SERRATIA MARCESCENS

7-34

PPROB_STRAG
PROTEIN B

STREPTOCOCCUS AGALACTIAE

58-85

PPROC_PSEAE
PYRROLINE-5-

PSEUDOMONAS AERUGINOSA

148-175

CARBOXYLATE REDUCTASE

PPROH_BACSU
PYRROLINE-5-

BACILLUS SUBTILIS

200-227

CARBOXYLATE REDUCTASE

HOMOL

PPROP_ECOLI
PROLINE/BETAINE

ESCHERICHIA COLI

460-487

TRANSPORTER

PPROV_ECOLI
PERIPHERAL MEMBRANE

ESCHERICHIA COLI

24-54

PROTEIN PROV

PPROV_SALTY
PERIPHERAL MEMBRANE

SALMONELLA TYPHIMURIUM

24-54

PROTEIN PROV

PPRRB_ECOLI
PRRB PROTEIN

ESCHERICHIA COLI

170-197

PPRRC_ECOLI
ANTICODON NUCLEASE

ESCHERICHIA COLI

282-309

PPRRD_ECOLI
PRRD PROTEIN

ESCHERICHIA COLI

278-305

PPRSA_BACSU
PROTEIN EXPORT PROTEIN

BACILLUS SUBTILIS

52-87
95-157

PRSA PRECURSOR

PPRTA_STRGR
PROTEASE A PRECURSOR

STREPTOMYCES GRISEUS

56-110

PPRTC_ERWCH
SECRETED PROTEASE C

ERWINIA CHRYSANTHEMI

103-130

PRECURSOR

PPRTC_PORGI
COLLAGENASE PRECURSOR

PORPHYROMONAS GINGIVALIS

285-312

PPRTD_ERWCH
PROTEASES SECRETION

ERWINIA CHRYSANTHEMI

328-355

PROTEIN PRTD

PPRTE_BACNO
EXTRACELLULAR SERINE

BACTEROIDES NODOSUS

106-133
219-265
346-384

PROTEASE PRECURSOR

PPRTE_ERWCH
PROTEASES SECRETION

ERWINIA CHRYSANTHEMI

108-135
158-192
231-290

PROTEIN PRTE

PPRTF_ERWCH
PROTEASES SECRETION

ERWINIA CHRYSANTHEMI

280-310

PROTEIN PRTF

PPRTM_LACLA
PROTEASE MATURATION

LACTOCOCCUS LACTIS

76-103
112-139

PROTEIN PRECURSOR

PPRTM_LACLC
PROTEASE MATURATION

LACTOCOCCUS LACTIS

26-53
76-103
112-139

PROTEIN PRECURSOR

PPRTM_LACPA
PROTEASE MATURATION

LACTOBACILLUS PARACASEI

76-103
112-139

PROTEIN PRECURSOR

PPRTS_SERMA
EXTRACELLULAR SERINE

SERRATIA MARCESCENS

304-331
576-607
1007-1041

PROTEASE PRECURSOR

PPRTT_SERMA
EXTRACELLULAR SERINE

SERRATIA MARCESCENS

304-331
464-491
1007-1041

PROTEASE PRECURSOR

PPRTX_ERWCH
SECRETED PROTEASE C

ERWINIA CHRYSANTHEMI

314-341

PRECURSOR

PPSAA_SYNEN
CHLOROPHYLL A

SYNECHOCOCCUS ELONGATUS

120-147

APOPROTEIN A1

NAEGEL

PPSAA_SYNP2
CHLOROPHYLL A

SYNECHOCOCCUS SP
109-136
326-356

APOPROTEIN A1

PPSAA_SYNVU
CHLOROPHYLL A

SYNECHOCOCCUS VULCANUS

120-147

APOPROTEIN A1

PPSAA_SYNY3
CHLOROPHYLL A

SYNECHOCYSTIS SP
44-71
120-147
338-368

APOPROTEIN A1

PPSAB_YERPE
CHAPERONE PROTEIN PSAB

YERSINIA PESTIS

244-271

PRECURSOR

PPSAD_SYNP6
PHOTOSYSTEM 1 REACTION

SYNECHOCOCCUS SP
11-38

CENTRE SUBUNIT II

PPSAE_YERPE
PSAE PROTEIN PRECURSOR

YERSINIA PESTIS

66-118

PPSBO_ANANI
STABILIZING POLYPEPTIDE

ANACYSTIS NIDULANS

99-126
209-243

PRECURSOR

PPSPA_ECOLI
PHAGE SHOCK PROTEIN A

ESCHERICHIA COLI

55-82

PPSRA_WOLSU
POLYSULFIDE REDUCTASE

WOLINELLA SUCCINOGENES

114-141

CHAIN A PRECURSOR

PPSTS_ECOLI
PHOSPHATE-BINDING

ESCHERICHIA COLI

40-74

PROTEIN PRECURSOR

PPT1_BACSU
PHOSPHOTRANSFERASE

BACILLUS SUBTILIS

26-60

PPT1_ECOLI
PHOSPHOTRANSFERASE

ESCHERICHIA COLI

135-162
399-426

PPT1_SALTY
PHOSPHOTRANSFERASE

SALMONELLA TYPHIMURIUM

232-259
399-426

PPT1_STACA
PHOSPHOTRANSFERASE

STAPHYLOCOCCUS CARNOSUS

34-61

PPT1_STRSL
PHOSPHOTRANSFERASE

STREPTOCOCCUS SALIVARIUS

34-61
198-232

PPT2B_ERWCH
PHOSPHOTRANSFERASE

ERWINIA CHRYSANTHEMI

127-154

ENZYME II

PPT2G_BACSU
PHOSPHOTRANSFERASE

BACILLUS SUBTILIS

670-697

ENZYME II

PPT2L_LACCA
PHOSPHOTRANSFERASE

LACTOBACILLUS CASEI

537-564

ENZYME II

PPT2L_LACLA
PHOSPHOTRANSFERASE

LACTOCOCCUS LACTIS

183-214
409-436

ENZYME II

PPT2L_STAAU
PHOSPHOTRANSFERASE

STAPHYLOCOCCUS AUREUS

421-448
530-557

ENZYME II

PPT2M_ECOLI
PHOSPHOTRANSFERASE

ESCHERICHIA COLI

445-489

ENZYME II

PPT2M_STACA
PHOSPHOTRANSFERASE

STAPHYLOCOCCUS CARNOSUS

388-415

ENZYME II

PPT2N_ECOLI
N-ACETYLGLUCOSAMINE-

ESCHERICHIA COLI

370-400

PERMEASE

PPT2S_STRMU
PHOSPHOTRANSFERASE

STREPTOCOCCUS MUTANS

600-627

ENZYME II

PPT3F_SALTY
PHOSPHOTRANSFERASE

SALMONELLA TYPHIMURIUM

107-134

FPR PROTEIN

PPT3L_LACCA
PHOSPHOTRANSFERASE

LACTOBACILLUS CASEI

40-67

FACTOR III

PPTHP_ECOLI
PHOSPHOCARRIER PROTEIN

ESCHERICHIA COLI &
31-65

HPR

SALMONELLA TYPHIMURIUM

PPTHP_KLEPN
PHOSPHOCARRIER PROTEIN

KLEBSIELLA PNEUMONIAE

31-65

HPR

PPTRB_ECOLI
PROTEASE II

ESCHERICHIA COLI

94-121
217-251

PPULA_KLEAE
PULLULANASE

KLEBSIELLA AEROGENES

894-928

PPULA_KLEPN
PULLULANASE

KLEBSIELLA PNEUMONIAE

894-918

PPULO_KLEPN
LEADER PEPTIDASE

KLEBSIELLA PNEUMONIAE

178-205

PPULS_KLEPN
PULS PRECURSOR

KLEBSIELLA PNEUMONIAE

70-97

PPUPA_PSEPU
UPTAKE PROTEIN

PSEUDOMONAS PUTIDA

112-162
210-237
429-463
736-763

PRECURSOR

PPUR1_BACSU
AMIDOPHOSPHORIBOSYL-

BACILLUS SUBTILIS

394-421

TRANSF PREC

PPUR2_BACSU
PHOSPHORIBOSYLAMINE--

BACILLUS SUBTILIS

349-376

GLYCINE LIGASE

PPUR3_BACSU
FORMYLTRANSFERASE

BACILLUS SUBTILIS

149-176

PPUR3_ECOLI
FORMYLTRANSFERASE

ESCHERICHIA COLI

27-54

PPUR4_BACSU
SYNTHASE I

BACILLUS SUBTILIS

18-45

PPUR5_BACSU
CYCLO-LIGASE

BACILLUS SUBTILIS

153-194

PPUR6_ECOLI
AIR CARBOXYLASE

ESCHERICHIA COLI

131-158

PPUR7_BACSU
SAICAR SYNTHETASE

BACILLUS SUBTILIS

3-43

PPUR8_BACSU
ADENYLOSUCCINATE LYASE

BACILLUS SUBTILIS

56-130
226-253

PPUR8_ECOLI
ADENYLOSUCCINATE LYASE

ESCHERICHIA COLI

194-221
331-372

PPUR9_BACSU
AICAR TRANSFORMYLASE

BACILLUS SUBTILIS

19-53
345-372

PPUR9_ECOLI
AICAR TRANSFORMYLASE

ESCHERICHIA COLI

239-268

PPUR9_SALTY
AICAR TRANSFORMYLASE

SALMONELLA TYPHIMURIUM

218-247

PPURL_BACSU
SYNTHASE II

BACILLUS SUBTILIS

609-636

PPYG1_ANASP
LINKER POLYPEPTIDE CPCG1

ANABAENA SP
88-115

PPYG1_MASLA
LINKER POLYPEPTIDE CPCG1

MASTIGOCLADUS LAMINOSUS

89-116

PPYG2_ANASP
LINKER POLYPEPTIDE CPCG2

ANABAENA SP
88-115

PPYG2_MASLA
LINKER POLYPEPTIDE CPCG2

MASTIGOCLADUS LAMINOSUS

89-116

PPYG3_MASLA
LINKER POLYPEPTIDE CPCG3

MASTIGOCLADUS LAMINOSUS

91-132

PPYG4_ANASP
LINKER POLYPEPTIDE CPCG4

ANABAENA SP
90-131

PPYR1_ANASP
32.1 KD LINKER POLYPEPTIDE

ANABAENA SP
35-62

PPYR2_FREDI
27.9 KD LINKER POLYPEPTIDE

FREMYELLA DIPLOSIPHON

105-132

PPYR4_FREDI
31.6 KD LINKER POLYPEPTIDE

FREMYELLA DIPLOSIPHON

22-66

PPYR5_FREDI
37.5 KD LINKER POLYPEPTIDE

FREMYELLA DIPLOSIPHON

106-143

PPYR6_FREDI
30.8 KD LINKER POLYPEPTIDE

FREMYELLA DIPLOSIPHON

43-70
113-140

PPYRB_BACSU
ASPARTATE CARBAMOYL-

BACILLUS SUBTILIS

9-36

TRANSFERASE

PPYRB_SERMA
ASPARTATE CARBAMOYL-

SERRATIA MARCESCENS

70-97

TRANSFERASE

PPYRD_ECOLI
DIHYDROOROTATE

ESCHERICHIA COLI

115-142

DEHYDROGENASE

PPYRD_SALTY
DIHYDROOROTATE

SALMONELLA TYPHIMURIUM

115-142
183-210

DEHYDROGENASE

PPYRG_BACSU
CTP SYNTHASE

BACILLUS SUBTILIS

275-302
322-349

PPYS1_FREDI
PHYCOBILISOME 9.7 KD

FREMYELLA DIPLOSIPHON

21-48

LINKER POLYPEPTIDE

PQOR_ECOLI
QUINONE OXIDOREDUCTASE

ESCHERICHIA COLI

180-215

PQUEA_ECOLI
QUEUOSINE BIOSYNTHESIS

ESCHERICHIA COLI

234-261

PROTEIN QUEA

PR34K_CLOPA
34.2 KD PROTEIN IN

CLOSTRIDIUM PASTEURIANUM

23-50
157-232

RUBREDOXIN OPERON

PRACC_ECOLI
RACC PROTEIN

ESCHERICHIA COLI

5-32

PRACD_STRTR
ASPARTATE RACEMASE

STREPTOCOCCUS THERMOPHILUS

152-189

PRACX_BACSU
PROBABLE AMINO ACID

BACILLUS SUBTILIS

132-162

RACEMASE

PRAFA_ECOLI
ALPHA-GALACTOSIDASE

ESCHERICHIA COLI

89-116

PRAFD_ECOLI
RAFFINOSE INVERTASE

ESCHERICHIA COLI

348-375

PRBSC_ECOLI
RIBOSE TRANSPORT SYSTEM

ESCHERICHIA COLI

65-99
195-222

COMPONENT

PRBSK_ECOLI
RIBOKINASE

ESCHERICHIA COLI

200-239

PRBTR_KLEAE
RIBITOL (RBT) OPERON

KLEBSIELLA AEROGENES

6-47

REPRESSOR

PRCSA_ECOLI
BIOSYNTHESIS ACTIVATION

ESCHERICHIA COLI

170-197

PROTEIN A

PRCSA_ERWAM
BIOSYNTHESIS ACTIVATION

ERWINIA AMYLOVORA

92-119
174-201

PROTEIN A

PRCSA_ERWST
BIOSYNTHESIS ACTIVATION

ERWINIA STEWARTII

174-201

PROTEIN A

PRCSA_KLEAE
BIOSYNTHESIS ACTIVATION

KLEBSIELLA AEROGENES

168-205

PROTEIN A

PRCSB_ECOLI
CAPSULE SYNTHESIS B

ESCHERICHIA COLI

14-41
159-186

COMPONENT

PREC2_LEGPN
RECA PROTEIN

LEGIONELLA PNEUMOPHILA

262-310

PRECA_ACHLA
RECA PROTEIN

ACHOLEPLASMA LAIDLAWII

283-310

PRECA_AGRTU
RECA PROTEIN

AGROBACTERIUM TUMEFACIENS

3-30
132-159
281-308

PRECA_ANAVA
RECA PROTEIN

ANABAENA VARIABILIS

322-349

PRECA_AQUPY
RECA PROTEIN

AQUIFEX PYROPHILUS

63-90
126-153

PRECA_BACFR
RECA PROTEIN

BACTEROIDES FRAGILIS

108-135

PRECA_BACSU
RECE PROTEIN

BACILLUS SUBTILIS

267-294

PRECA_BRUAB
RECA PROTEIN

BRUCELLA ABORTUS

3-30
132-159
280-307

PRECA_BURCE
RECA PROTEIN

BURKHOLDERIA CEPACIA

75-109

PRECA_ERWCA
RECA PROTEIN

ERWINIA CAROTOVORA

284-311

PRECA_LACDE
RECA PROTEIN

LACTOBACILLUS DELBRUECKII

20-47

PRECA_LACHE
RECA PROTEIN

LACTOBACILLUS HELVETICUS

20-47

PRECA_LACLA
RECA PROTEIN

LACTOCOCCUS LACTIS

135-162
232-269
288-315

PRECA_METCL
RECA PROTEIN

METHYLOMONAS CLARA

266-303

PRECA_METFL
RECA PROTEIN

METHYLOBACILLUS FLAGELLATUM

276-303

PRECA_MYCPU
RECA PROTEIN

MYCOPLASMA PULMONIS

30-57

PRECA_MYCTU
RECA PROTEIN

MYCOBACTERIUM TUBERCULOSIS

749-776

PRECA_NEIGO
RECA PROTEIN

NEISSERIA GONORRHOEAE

263-310

PRECA_PROMI
RECA PROTEIN

PROTEUS MIRABILIS

283-310

PRECA_PSEAE
RECA PROTEIN

PSEUDOMONAS AERUGINOSA

282-309

PRECA_RHILP
RECA PROTEIN

RHIZOBIUM LEGUMINOSARUM

3-30
131-158
280-307

PRECA_RHILV
RECA PROTEIN

RHIZOBIUM LEGUMINOSARUM

119-146
268-295

PRECA_RHIME
RECA PROTEIN

RHIZOBIUM MELILOTI

119-146
268-295

PRECA_RHOSH
RECA PROTEIN

RHODOBACTER SPHAEROIDES

119-146

PRECA_STRPN
RECA PROTEIN

STREPTOCOCCUS PNEUMONIAE

134-161
293-327

PRECA_SYNP2
RECA PROTEIN

SYNECHOCOCCUS SP
124-151

PRECA_VIBCH
RECA PROTEIN

VIBRIO CHOLERAE

290-317

PRECF_BACSU
RECF PROTEIN

BACILLUS SUBTILIS

4-31
178-205

PRECF_ECOLI
RECF PROTEIN

ESCHERICHIA COLI

82-109
147-174

PRECF_PROMI
RECF PROTEIN

PROTEUS MIRABILIS

86-113

PRECF_PSEPU
RECF PROTEIN

PSEUDOMONAS PUTIDA

84-111

PRECF_SALTY
RECF PROTEIN

SALMONELLA TYPHIMURIUM

147-174

PRECJ_ECOLI
EXONUCLEASE RECJ

ESCHERICHIA COLI

52-79

PRECN_BACSU
RECOMBINATION PROTEIN

BACILLUS SUBTILIS

21-48
156-184
192-247
299-336
344-378

PRECQ_ECOLI
DNA HELICASE RECQ

ESCHERICHIA COLI

468-495

PRELA_ECOLI
GTP PYROPHOSPHOKINASE

ESCHERICHIA COLI

680-707

PREMA_BACSU
REPLICATION AND

BACILLUS SUBTILIS

2-36
81-108

MAINTENANCE PROTEIN

PREMA_STAAU
REPLICATION AND

STAPHYLOCOCCUS AUREUS

2-36
81-108

MAINTENANCE PROTEIN

PREMA_STAEP
REPLICATION AND

STAPHYLOCOCCUS EPIDERMIDIS

2-36
81-108

MAINTENANCE PROTEIN

PREP5_ECOLI
REPLICATION PROTEIN REPA

ESCHERICHIA COLI

50-77
90-117

PREPA_BACSU
REPA PROTEIN

BACILLUS SUBTILIS

342-373

PREPA_ECOLI
REPA PROTEIN

ESCHERICHIA COLI

91-118
228-255

PREPA_NEIGO
REPLICATION PROTEIN

NEISSERIA GONORRHOEAE

57-84
138-172

PREPB_LACPL
REPLICATION PROTEIN

LACTOBACILLUS PLANTARUM

184-211

REPB

PREPM_STAAU
REPLICATION INITIATION

STAPHYLOCOCCUS AUREUS

254-284

PROTEIN

PREPN_STAAU
REPLICATION INITIATION

STAPHYLOCOCCUS AUREUS

258-285

PROTEIN

PREPR_STRAG
REPR PROTEIN

STREPTOCOCCUS AGALACTIAE

430-467

PREPS_STRPY
REPS PROTEIN

STREPTOCOCCUS PYOGENES

423-467

PREPX_STAAU
REP PROTEIN

STAPHYLOCOCCUS AUREUS

111-150
172-210

PREPY_ECOLI
REPLICATION INITIATION

ESCHERICHIA COLI

288-315

PROTEIN

PREP_CLOPE
REPLICATION PROTEIN

CLOSTRIDIUM PERFRINGENS

168-195
297-324
343-375

PREP_ECOLI
REP HELICASE

ESCHERICHIA COLI

119-146
205-243

PREP_LACPL
REP PROTEIN

LACTOBACILLUS PLANTARUM

119-199
260-287

PRESP_CLOPE
RESOLVASE

CLOSTRIDIUM PERFRINGENS

68-102
151-185

PRF2_BACSU
PROBABLE PEPTIDE CHAIN

BACILLUS SUBTILIS

34-68

RELEASE FACTOR 2

PRF2_ECOLI
PEPTIDE CHAIN RELEASE

ESCHERICHIA COLI

86-113
163-204

FACTOR 2

PRF2_SALTY
PEPTIDE CHAIN RELEASE

SALMONELLA TYPHIMURIUM

86-113
163-204

FACTOR 2

PRF3_ECOLI
PEPTIDE CHAIN RELEASE

ESCHERICHIA COLI

180-210
443-473

FACTOR 3

PRFAB_ECOLI
1,6-GALACTOSYL-

ESCHERICHIA COLI

199-226

TRANSFERASE

PRFAG_ECOLI
BIOSYNTHESIS PROTEIN

ESCHERICHIA COLI

185-212

RFAG

PRFAJ_ECOLI
1,2-GLUCOSYLTRANSFERASE

ESCHERICHIA COLI

39-66
233-268

PRFAJ_SALTY
1,2-GLUCOSYLTRANSFERASE

SALMONELLA TYPHIMURIUM

68-95
145-172
236-263

PRFAK_SALTY
1,2-N-ACETYLGLUCOSAMINE-

SALMONELLA TYPHIMURIUM

335-369

TRANSFERASE

PRFAL_ECOLI
O-ANTIGEN LIGASE

ESCHERICHIA COLI

366-393

PRFAL_SALTY
O-ANTIGEN LIGASE

SALMONELLA TYPHIMURIUM

326-360

PRFAP_ECOLI
BIOSYNTHESIS PROTEIN RFAP

ESCHERICHIA COLI

8-35

PRFAS_ECOLI
BIOSYNTHESIS PROTEIN RFAS

ESCHERICHIA COLI

62-89
184-240

PRFAY_ECOLI
BIOSYNTHESIS PROTEIN

ESCHERICHIA COLI

18-45

RFAY

PRFAZ_ECOLI
BIOSYNTHESIS PROTEIN

ESCHERICHIA COLI

3-30
85-112

RFAZ

PRFBB_SALTY
DTDP-GLUCOSE 4,6-

SALMONELLA TYPHIMURIUM

320-359

DEHYDRATASE

PRFBM_SALTY
MANNOSE-1-PHOSPHATE

SALMONELLA TYPHIMURIUM

313-361

GUANYLYLTRANSFERASE

PRFBS_SALTI
PARATOSE SYNTHASE

SALMONELLA TYPHI

22-56
205-232

PRFEA_VIBAN
PRECURSOR FOR FERRIC

VIBRIO ANGUILLARUM

349-376

ANGUIBACTIN

PRFH_ECOLI
PEPTIDE CHAIN RELEASE

ESCHERICHIA COLI

83-110

FACTOR HOMOLOG

PRG12_BACTU
PUTATIVE G12 SITE-SPECIFIC

BACILLUS THURINGIENSIS

15-68
190-262
310-383

RECOMBINASE

PRHAB_ECOLI
RHAMNULOKINASE

ESCHERICHIA COLI

175-202

PRHAB_SALTY
RHAMNULOKINASE

SALMONELLA TYPHIMURIUM

175-202

PRHAR_ECOLI
L-RHAMNOSE OPERON

ESCHERICHIA COLI

10-41

TRANSACTIVATOR

PRHAS_ECOLI
L-RHAMNOSE OPERON REG

ESCHERICHIA COLI

152-179

PROTEIN RHAS

PRHIR_RHILV
RHIR REGULATORY PROTEIN

RHIZOBIUM LEGUMINOSARUM

206-233

PRHLB_ECOLI
RNA HELICASE RHLB/MMRA

ESCHERICHIA COLI

138-165

PRHO_BORBU
TRANS TERM FACTOR RHO

BORRELIA BURGDORFERI

215-242
327-369

PRHPR_BACSU
PROTEASE PROD REG

BACILLUS SUBTILIS

82-109

PROTEIN HPR

PRHSA_ECOLI
RHSA PROTEIN PRECURSOR

ESCHERICHIA COLI

667-694

PRHSB_ECOLI
RHSB PROTEIN PRECURSOR

ESCHERICHIA COLI

667-694

PRHSC_ECOLI
RHSC PROTEIN PRECURSOR

ESCHERICHIA COLI

380-414
667-694
1056-1083

PRHSD_ECOLI
RHSD PROTEIN PRECURSOR

ESCHERICHIA COLI

671-712
1071-1098

PRHSE_ECOLI
RHSE PROTEIN

ESCHERICHIA COLI

345-372

PRIML_ECOLI
ACETYLTRANSFERASE

ESCHERICHIA COLI

93-127

PRIR2_ECOLI
RIBONUCLEOSIDE-

ESCHERICHIA COLI

167-194

DIPHOSPHATE REDUCTASE

PRISA_PHOLE
RIBOFLAVIN SYNTHASE

PHOTOBACTERIUM LEIOGNATHI

2-47
131-158

ALPHA CHAIN

PRISB_BACSU
RIBOFLAVIN SYNTHASE

BACILLUS SUBTILIS

8-35

BETA CHAIN

PRISB_PHOLE
RIBOFLAVIN SYNTHASE

PHOTOBACTERIUM LEIOGNATHI

14-41

BETA CHAIN

PRL10_STRAT
50S RIBOSOMAL PROTEIN L10

STREPTOMYCES ANTIBIOTICUS

14-72
106-133

PRL12_SYNY3
50S RIBOSOMAL PROTEIN L12

SYNECHOCYSTIS SP
2-34

PRL12_THEMA
50S RIBOSOMAL PROTEIN L12

THERMOTOGA MARITIMA

8-35
56-86

PRL14_BACST
50S RIBOSOMAL PROTEIN L14

BACILLUS STEAROTHERMOPHILUS

18-45

PRL14_MICLU
50S RIBOSOMAL PROTEIN L14

MICROCOCCUS LUTEUS

18-45

PRL14_MYCCA
50S RIBOSOMAL PROTEIN L14

MYCOPLASMA CAPRICOLUM

51-92

PRL15_BACLI
50S RIBOSOMAL PROTEIN L15

BACILLUS LICHENIFORMIS

21-48

PRL15_BACST
50S RIBOSOMAL PROTEIN L15

BACILLUS STEAROTHERMOPHILUS

95-134

PRL15_BACSU
50S RIBOSOMAL PROTEIN L15

BACILLUS SUBTILIS

95-122

PRL15_CHLTR
50S RIBOSOMAL PROTEIN L15

CHLAMYDIA TRACHOMATIS

110-144

PRL15_ECOLI
50S RIBOSOMAL PROTEIN L15

ESCHERICHIA COLI

79-113

PRL15_LACLA
50S RIBOSOMAL PROTEIN L15

LACTOCOCCUS LACTIS

8-35

PRL15_METVA
50S RIBOSOMAL PROTEIN L15

METHANOCOCCUS VANNIELII

68-102

PRL15_MYCCA
50S RIBOSOMAL PROTEIN L15

MYCOPLASMA CAPRICOLUM

63-135

PRL18_BACST
50S RIBOSOMAL PROTEIN L18

BACILLUS STEAROTHERMOPHILUS

31-58

PRL18_CHLTR
50S RIBOSOMAL PROTEIN L18

CHLAMYDIA TRACHOMATIS

32-86

PRL18_HALMA
50S RIBOSOMAL PROTEIN L18

HALOARCULA MARISMORTUI

80-107

PRL18_MYCCA
50S RIBOSOMAL PROTEIN L18

MYCOPLASMA CAPRICOLUM

61-88

PRL19_ECOLI
50S RIBOSOMAL PROTEIN L19

ESCHERICHIA COLI

25-52

PRL19_HALMA
50S RIBOSOMAL PROTEIN L19

HALOARCULA MARISMORTUI

101-128

PRL19_METVA
PROBABLE 50S RIBOSOMAL

METHANOCOCCUS VANNIELII

45-72

PROTEIN

PRL1_PROVU
50S RIBOSOMAL PROTEIN L1

PROTEUS VULGARIS

159-194

PRL1_SULSO
50S RIBOSOMAL PROTEIN L1

SULFOLOBUS SOLFATARICUS

5-32
184-211

PRL20_ECOLI
50S RIBOSOMAL PROTEIN L20

ESCHERICHIA COLI

14-41

PRL20_MYCFE
50S RIBOSOMAL PROTEIN L20

MYCOPLASMA FERMENTANS

14-41

PRL21_BACSU
50S RIBOSOMAL PROTEIN L21

BACILLUS SUBTILIS

4-38

PRL22_ECOLI
50S RIBOSOMAL PROTEIN L22

ESCHERICHIA COLI

28-55

PRL23_METVA
50S RIBOSOMAL PROTEIN L23

METHANOCOCCUS VANNIELII

30-57

PRL23_MYCCA
50S RIBOSOMAL PROTEIN L23

MYCOPLASMA CAPRICOLUM

32-59

PRL24_HALMA
50S RIBOSOMAL PROTEIN L24

HALOARCULA MARISMORTUI

48-75

PRL24_METVA
50S RIBOSOMAL PROTEIN L24

METHANOCOCCUS VANNIELII

61-90

PRL24_MICLU
50S RIBOSOMAL PROTEIN L24

MICROCOCCUS LUTEUS

36-63

PRL29_CHLTR
50S RIBOSOMAL PROTEIN L29

CHLAMYDIA TRACHOMATIS

39-66

PRL29_ECOLI
50S RIBOSOMAL PROTEIN L29

ESCHERICHIA COLI

36-63

PRL29_MYCCA
50S RIBOSOMAL PROTEIN L29

MYCOPLASMA CAPRICOLUM

39-85

PRL4_BACST
50S RIBOSOMAL PROTEIN L4

BACILLUS STEAROTHERMOPHILUS

141-168

PRL4_MYCCA
50S RIBOSOMAL PROTEIN L4

MYCOPLASMA CAPRICOLUM

144-198

PRL5_THETH
50S RIBOSOMAL PROTEIN L5

THERMUS AQUATICUS

38-65

PRL6_BACST
50S RIBOSOMAL PROTEIN L6

BACILLUS STEAROTHERMOPHILUS

79-106

PRL6_ECOLI
50S RIBOSOMAL PROTEIN L6

ESCHERICHIA COLI

19-46

PRL6_METVA
50S RIBOSOMAL PROTEIN L6

METHANOCOCCUS VANNIELII

129-159

PRL9_BACST
50S RIBOSOMAL PROTEIN L9

BACILLUS STEAROTHERMOPHILUS

47-77

PRL9_ECOLI
50S RIBOSOMAL PROTEIN L9

ESCHERICHIA COLI

122-149

PRLA0_HALCU
ACIDIC RIBOSOMAL PROTEIN

HALBACTERIUM CUTIRUBRUM

138-182

P0 HOMOLOG

PRLA0_HALHA
ACIDIC RIBOSOMAL PROTEIN

HALOBACTERIUM HALOBIUM

138-182

P0 HOMOLOG

PRLA0_HALMA
ACIDIC RIBOSOMAL PROTEIN

HALOARCULA MARISMORTUI

64-91
153-184

P0 HOMOLOG

PRLA0_METVA
ACIDIC RIBOSOMAL PROTEIN

METHANOCOCCUS VANNIELII

194-221

P0 HOMOLOG

PRLA_HALEU
RIBOSOMAL PROTEIN ‘A’

HALOPHILIC EUBACTERIUM

59-86

NRCC 41227

PRLA_HALHA
50S RIBOSOMAL PROTEIN L20

HALOBACTERIUM HALOBIUM

2-29

PRLA_HALMA
50S RIBOSOMAL PROTEIN L12

HALOARCULA MARISMORTUI

2-29

PRLA_METVA
RIBOSOMAL PROTEIN ‘A’

METHANOCOCCUS VANNIELII

2-29

PRLA_MICLU
50S RIBOSOMAL PROTEIN MA

MICROCOCCUS LUTEUS

55-82
90-117

PRLX1_SALTY
43 KD RELAXATION PROTEIN

SALMONELLA TYPHIMURIUM

226-260

PRLX1_STAAU
RLX PROTEIN

STAPHYLOCOCCUS AUREUS

3-30
102-132
177-218
266-300

PRLX2_SALTY
22 KD RELAXATION PROTEIN

SALMONELLA TYPHIMURIUM

19-53

PRLX2_STAAU
RLX PROTEIN

STAPHYLOCOCCUS AUREUS

3-30
102-133
261-295

PRLX3_STAAU
RLX PROTEIN

STAPHYLOCOCCUS AUREUS

3-30
146-216

PRLX_SULSO
50S RIBOSOMAL PROTEIN LX

SULFOLOBUS SOLFATARICUS

32-62

PRNBR_BACAM
RIBONUCLEASE PRECURSOR

BACILLUS AMYLOLIQUEFACIENS

33-67
129-156

PRNC_ECOLI
RIBONUCLEASE III

ESCHERICHIA COLI

10-37
117-144

PRNE_ECOLI
RIBONUCLEASE E

ESCHERICHIA COLI

413-440
628-662

PRNPA_BUCAP
RIBONUCLEASE P PROTEIN

BUCHNERA APHIDICOLA

85-114

COMPONENT

PRNPH_BACSU
RIBONUCLEASE PH

BACILLUS SUBTILIS

159-186

PRNS_ECOLI
REGULATORY PROTEIN RNS

ESCHERICHIA COLI

116-160

PRN_BACCI
RIBONUCLEASE

BACILLUS CIRCULANS

82-109

PRN_BACIN
RIBONUCLEASE PRECURSOR

BACILLUS INTERMEDIUS

38-72

PRP28_BACTK
RNA POLYMERASE SIGMA-28

BACILLUS THURINGIENSIS

73-107

FACTOR PRECURSOR

PRP32_CITFR
RNA POLYMERASE SIGMA-32

CITROBACTER FREUNDII

30-57

FACTOR

PRP35_BACTK
RNA POLYMERASE SIGMA-35

BACILLUS THURINGIENSIS

8-35
63-90

FACTOR PRECURSOR

PRP54_ALCEU
RNA POLYMERASE SIGMA-54

ALCALIGENES EUTROPHUS

229-266

FACTOR

PRP54_AZOCA
RNA POLYMERASE SIGMA-54

AZORHIZOBIUM CAULINODANS

174-208

FACTOR

PRP54_BACSU
RNA POLYMERASE SIGMA-54

BACILLUS SUBTILIS

16-43
97-124
274-308
396-423

FACTOR

PRP54_BRAJA
RNA POLYMERASE SIGMA-54

BRADYRHIZOBIUM JAPONICUM

97-124

FACTOR 1

PRP54_KLEPN
RNA POLYMERASE SIGMA-54

KLEBSIELLA PNEUMONIAE

148-182

FACTOR

PRP54_RHOCA
RNA POLYMERASE SIGMA-54

RHODOBACTER CAPSULATUS

155-185

FACTOR

PRP55_BRAJA
RNA POLYMERASE SIGMA-54

BRADYRHIZOBIUM JAPONICUM

145-172

FACTOR 2

PRP5M_ALCEU
PROBABLE SIGMA (54)

ALCALIGENES EUTROPHUS

21-51

MODULATION PROTEIN

PRP5M_ECOLI
PROBABLE SIGMA (54)

ESCHERICHIA COLI

21-67

MODULATION PROTEIN

PRP5M_SALTY
PROBABLE SIGMA (54)

SALMONELLA TYPHIMURIUM

21-67

MODULATION PROTEIN

PRP70_BUCAP
RNA POLYMERASE SIGMA-70

BUCHNERA APHIDICOLA

69-96
109-136
173-217
228-255
303-337

FACTOR

PRP70_CHLTR
RNA POLYMERASE SIGMA-70

CHLAMYDIA TRACHOMATIS

5-32

FACTOR

PRP70_ECOLI
RNA POLYMERASE SIGMA-70

ESCHERICHIA COLI

327-361

FACTOR

PRP70_PSEAE
RNA POLYMERASE SIGMA-70

PSEUDOMONAS AERUGINOSA

334-368

FACTOR

PRP70_RICPR
RNA POLYMERASE SIGMA-70

RICKETTSIA PROWAZEKII

244-321
348-382

FACTOR

PRP80_MYXXA
RNA POLYMERASE SIGMA-80

MYXOCOCCUS XANTHUS

208-235
318-347
359-386

FACTOR

PRPCF_SYNPY
BILIN BIOSYNTHESIS

SYNECHOCOCCUS SP
180-207

PROTEIN RPCF

PRPOA_BACSU
DNA-DIRECTED RNA

BACILLUS SUBTILIS

55-107

POLYMERASE ALPHA CHAIN

PRPOA_ECOLI
A-DIRECTED RNA

ESCHERICHIA COLI &
57-105

POLYMERASE ALPHA CHAIN

SALMONELLA TYPHIMURIUM

PRPOA_HALHA
DNA-DIRECTED RNA

HALOBACTERIUM HALOBIUM

863-904

POLYMERASE SUBUNIT A

PRPOA_HALMO
A-DIRECTED RNA

HALOCOCCUS MORRHUAE

229-270

POLYMERASE SUBUNIT A

PRPOA_METTH
DNA-DIRECTED RNA

METHANOBACTERIUM

218-245
486-513
642-669

POLYMERASE SUBUNIT A

THERMOAUTOTROPHICU

PRPOA_SULAC
DNA-DIRECTED RNA

SULFOLOBUS ACIDOCALDARIUS

222-256
500-527
693-720

POLYMERASE SUBUNIT A

PRPOA_THECE
DNA-DIRECTED RNA

THERMOCOCCUS CELER

228-262

POLYMERASE SUBUNIT A′

PRPOB_ECOLI
DNA-DIRECTED RNA

ESCHERICHIA COLI

599-626
1011-1038

POLYMERASE BETA CHAIN

PRPOB_MYCLE
DNA-DIRECTED RNA

MYCOBACTERIUM LEPRAE

723-760
1084-1111

POLYMERASE BETA CHAIN

PRPOB_SALTY
A-DIRECTED RNA

SALMONELLA TYPHIMURIUM

599-626
958-985
1011-1038

POLYMERASE BETA CHAIN

PRPOB_SULAC
A-DIRECTED RNA

SULFOLOBUS ACIDOCALDARIUS

160-187
255-282
534-561
827-861

POLYMERASE SUBUNIT B

PRPOB_THEMA
A-DIRECTED RNA

THERMOTOGA MARITIMA

350-377

POLYMERASE BETA CHAIN

PRPOC_ANASP
DNA-DIRECTED RNA

ANABAENA SP
152-194

POLYMERASE GAMMA CHAIN

PRPOC_ECOLI
DNA-DIRECTED RNA

ESCHERICHIA COLI

786-813
948-994
1223-1257

POLYMERASE BETA CHAIN

PRPOC_HALHA
DNA-DIRECTED RNA

HALOBACTERIUM HALOBIUM

175-202

POLYMERASE SUBUNIT C

PRPOC_HALMO
DNA-DIRECTED RNA

HALOCOCCUS MORRHUAE

27-54
117-144
207-234

POLYMERASE SUBUNIT C

PRPOC_METTH
DNA-DIRECTED RNA

METHANOBACTERIUM

58-85
272-302
327-354

POLYMERASE SUBUNIT C

THERMOAUTOTROPHICU

PRPOC_MYCLE
A-DIRECTED RNA

MYCOBACTERIUM LEPRAE

273-300
860-887
911-938
1131-1158

POLYMERASE BETA′ CHAIN

PRPOC_NOSCO
DNA-DIRECTED RNA

NOSTOC COMMUNE

150-192

POLYMERASE GAMMA CHAIN

PRPOC_SULAC
DNA-DIRECTED RNA

SULFOLOBUS ACIDOCALDARIUS

36-63
172-214
224-251

POLYMERASE SUBUNIT C

PRPOC_THECE
DNA-DIRECTED RNA

THERMOCOCCUS CELER

21-58

POLYMERASE SUBUNIT A″

PRPOD_NOSCO
DNA-DIRECTED RNA

NOSTOC COMMUNE

72-116
402-449
539-566

POLYMERASE DELTA CHAIN

PRPOE_ECOLI
RNA POLYMERASE SIGMA-E

ESCHERICHIA COLI

5-39

FACTOR

PRPOS_ECOLI
RNA POLYMERASE SIGMA

ESCHERICHIA COLI

281-308

FACTOR KATF

PRPOU_HALHA
DNA-DIRECTED RNA

HALOBACTERIUM HALOBIUM

91-118

POLYMERASE SUBUNIT B′

PRPSA_AGRTU
RNA POLYMERASE SIGMA-A

AGROBACTERIUM TUMEFACIENS

310-347
397-427

FACTOR

PRPSA_ANASP
RNA POLYMERASE SIGMA-A

ANABAENA SP
71-105

FACTOR

PRPSA_CLOAB
RNA POLYMERASE SIGMA-A

CLOSTRIDIUM ACETOBUTYLICUM

2-29

FACTOR

PRPSA_STRAU
RNA POLYMERASE SIGMA

STREPTOMYCES AUREOFACIENS

278-305

FACTOR RPOD

PRPSB_ANASP
RNA POLYMERASE SIGMA-B

ANABAENA SP
4-31

FACTOR

PRPSB_BACSU
RNA POLYMERASE SIGMA-B

BACILLUS SUBTILIS

5-35
169-196
200-230

FACTOR

PRPSB_MYXXA
RNA POLYMERASE SIGMA-B

MYXOCOCCUS XANTHUS

47-74

FACTOR

PRPSB_STIAU
RNA POLYMERASE SIGMA-B

STIGMATELLA AURANTIACA

96-123

FACTOR

PRPSC_ANASP
RNA POLYMERASE SIGMA-C

ANABAENA SP
58-85

FACTOR

PRPSD_BACSU
RNA POLYMERASE SIGMA-D

BACILLUS SUBTILIS

192-249

FACTOR

PRPSE_BACSU
RNA POLYMERASE SIGMA-E

BACILLUS SUBTILIS

63-90

FACTOR PRECURSOR

PRPSE_CLOAB
RNA POLYMERASE SIGMA-E

CLOSTRIDIUM ACETOBUTYLICUM

14-41
116-160

FACTOR

PRPSF_BACLI
RNA POLYMERASE SIGMA-F

BACILLUS LICHENIFORMIS

4-31
191-248

FACTOR

PRPSF_BACME
RNA POLYMERASE SIGMA-F

BACILLUS MEGATERIUM

191-225

FACTOR

PRPSF_BACSU
RNA POLYMERASE SIGMA-F

BACILLUS SUBTILIS

4-31
191-248

FACTOR

PRPSH_BACLI
RNA POLYMERASE SIGMA-H

BACILLUS LICHENIFORMIS

191-218

FACTOR

PRPSH_BACSU
RNA POLYMERASE SIGMA-H

BACILLUS SUBTILIS

186-213

FACTOR

PRPSK_BACSU
RNA POLYMERASE SIGMA-K

BACILLUS SUBTILIS

75-109
189-216

FACTOR

PRPSP_STAAU
RNA POLYMERASE SIGMA

STAPHYLOCOCCUS AUREUS

19-46

FACTOR PLAC

PRPSW_STRCO
RNA POLYMERASE SIGMA

STREPOMYCES COELICOLOR

232-273

FACTOR WHIG

PRPSX_BACTK
POSSIBLE RNA POLYMERASE

BACILLUS THURINGIENSIS

33-60

SIGMA-G FACTOR

PRS10_ECOLI
30S RIBOSOMAL PROTEIN S10

ESCHERICHIA COLI

3-30

PRS11_BACSU
30S RIBOSOMAL PROTEIN S11

BACILLUS SUBTILIS

8-42

PRS13_BACSU
30S RIBOSOMAL PROTEIN S13

BACILLUS SUBTILIS

44-85

PRS17_METVA
30S RIBOSOMAL PROTEIN S17

METHANOCOCCUS VANNIELII

34-73

PRS1_ECOLI
30S RIBOSOMAL PROTEIN S1

ESCHERICHIA COLI

99-126
144-171

PRS1_PROSP
30S RIBOSOMAL PROTEIN S1

PROVIDENCIA SP
39-66
265-292
349-376

PRS1_RHIME
30S RIBOSOMAL PROTEIN S1

RHIZOBIUM MELILOTI

91-125
172-217

PRS21_BACST
30S RIBOSOMAL PROTEIN S21

BACILLUS STEAROTHERMOPHILUS

1-28

PRS2_SPICI
30S RIBOSOMAL PROTEIN S2

SPIROPLASMA CITRI

91-125

PRS3_ACHLA
30S RIBOSOMAL PROTEIN S3

ACHOLEPLASMA LAIDLAWII

83-110

PRS3_MYCCA
30S RIBOSOMAL PROTEIN S3

MYCOPLASMA CAPRICOLUM

77-106
136-163

PRS4_ECOLI
30S RIBOSOMAL PROTEIN S4

ESCHERICHIA COLI

50-77

PRS5_HALMA
30S RIBOSOMAL PROTEIN S5

HALOARCULA MARISMORTUI

160-187

PRS5_MYCCA
30S RIBOSOMAL PROTEIN S5

MYCOPLASMA CAPRICOLUM

35-62
182-216

PRS6_THETH
30S RIBOSOMAL PROTEIN S6

THERMUS AQUATICUS

16-43

PRS7_METVA
30S RIBOSOMAL PROTEIN S7

METHANOCOCCUS VANNIELII

69-96

PRS7_MYCLE
30S RIBOSOMAL PROTEIN S7

MYCOBACTERIUM LEPRAE

22-49

PRS8_MICLU
30S RIBOSOMAL PROTEIN S8

MICROCOCCUS LUTEUS

103-130

PRS8_MYCCA
30S RIBOSOMAL PROTEIN S8

MYCOPLASMA CAPRICOLUM

41-78

PRSGA_ECOLI
FERRITIN LIKE PROTEIN

ESCHERICHIA COLI

80-107

PRT67_ECOLI
RNA-DIRECTED DNA

ESCHERICHIA COLI

225-268

POLYMERASE

PSACB_BACAM
LEVANSUCRASE PRECURSOR

BACILLUS AMYLOLIQUEFACIENS

175-202
254-281

PSACB_BACSU
LEVANSUCRASE PRECURSOR

BACILLUS SUBTILIS

175-202
254-288

PSACB_STRMU
LEVANSUCRASE PRECURSOR

STREPTOCOCCUS MUTANS

31-65
155-189
314-369

PSACQ_BACLI
SACQ REGULATORY FACTOR

BACILLUS LICHENIFORMIS

2-46

PSACT_BACSU
SACPA OPERON ANTI-

BACILLUS SUBTILIS

102-129
189-216

TERMINATOR

PSAGP_STRPY
STREPTOCOCCAL ACID

STREPTOCOCCUS PYOGENES

294-331
362-389

GLYCOPROTEIN

PSAOX_BACSN
SARCOSINE OXIDASE

BACILLUS SP
350-377

PSAS2_CLOBI
SPORE PROTEIN

CLOSTRIDIUM BIFERMENTANS

17-47

PSASG_BACCE
SPORE PROTEIN GAMMA-

BACILLUS CEREUS

31-58

TYPE

PSASG_BACST
SPORE PROTEIN GAMMA-

BACILLUS STEAROTHERMOPHILUS

37-64

TYPE

PSBCC_ECOLI
EXONUCLEASE SBCC

ESCHERICHIA COLI

218-260
337-364
535-585
622-656
778-812
821-865
915-942

PSBCD_ECOLI
EXONUCLEASE SBCD

ESCHERICHIA COLI

137-164
334-397

PSBM_ECOLI
SBM PROTEIN

ESCHERICHIA COLI

5-32
436-470
553-580

PSBP_BACSU
SBP PROTEIN

BACILLUS SUBTILIS

28-55

PSCPA_STRPY
C5A PEPTIDASE PRECURSOR

STREPTOCOCCUS PYOGENES

126-160
784-811
831-880

PSCRB_KLEPN
SUCROSE-6-PHOSPHATE

KLEBSIELLA PNEUMONIAE

174-201

HYDROLASE

PSCRB_LACLA
SUCROSE-6-PHOSPHATE

LACTOCOCCUS LACTIS

182-217
354-385
395-422

HYDROLASE

PSCRB_STRMU
SUCROSE-6-PHOSPHATE

STREPTOCOCCUS MUTANS

335-362

HYDROLASE

PSCRK_SALTH
FRUCTOKINASE

SALMONELLA THOMPSON

97-124

PSCRK_SALTY
FRUCTOKINASE

SALMONELLA TYPHIMURIUM

183-210

PSCRY_KLEPN
SUCROSE PORIN PRECURSOR

KLEBSIELLA PNEUMONIAE

61-88
240-267

PSCRY_SALTY
SUCROSE PORIN PRECURSOR

SALMONELLA TYPHIMURIUM

16-54
61-88
240-267

PSECA_BACSU
PREPROTEIN TRANSLOCASE

BACILLUS SUBTILIS

12-39
226-260

SECA SUBUNIT

PSECA_ECOLI
PREPROTEIN TRANSLOCASE

ESCHERICHIA COLI

360-387
453-481

SECA SUBUNIT

PSECB_ECOLI
PROTEIN-EXPORT PROTEIN

ESCHERICHIA COLI

41-68

SECB

PSECD_ECOLI
PROTEIN-EXPORT

ESCHERICHIA COLI

46-73
378-412

MEMBRANE PROTEIN SECD

PSECF_ECOLI
PROTEIN-EXPORT

ESCHERICHIA COLI

174-201

MEMBRANE PROTEIN SECF

PSECY_ECOLI
PREPROTEIN TRANSLOCASE

ESCHERICHIA COLI

101-128

SECY SUBUNIT

PSECY_LACLA
PREPROTEIN TRANSLOCASE

LACTOCOCCUS LACTIS

403-430

SECY SUBUNIT

PSECY_METVA
PREPROTEIN TRANSLOCASE

METHANOCOCCUS VANNIELII

131-161
396-423

SECY SUBUNIT

PSECY_STACA
PREPROTEIN TRANSLOCASE

STAPHYLOCOCCUS CARNOSUS

149-191

SECY SUBUNIT

PSEFC_SALEN
SEFC PROTEIN PRECURSOR

SALMONELLA ENTERITIDIS

137-164
475-535

PSERA_BACSU
D-3-PHOSPHOGLYCERATE

BACILLUS SUBTILIS

16-43
347-374

DEHYDROGENASE

PSFAA_ECOLI
S-FIMBRIAL PROTEIN

ESCHERICHIA COLI

11-38

SUBUNIT PRECURSOR

PSFSA_ECOLI
SUGAR FERMENTATION

ESCHERICHIA COLI

81-115

STIMULATION PROTEIN

PSFUA_SERMA
IRON-TRANSPORT SFUA

SERRATIA MARCESCENS

34-61

PROTEIN PRECURSOR

PSHU1_ECOLI
SHUFFLON PROTEIN A

ESCHERICHIA COLI

224-262

PSHU2_ECOLI
SHUFFLON PROTEIN A′

ESCHERICHIA COLI

224-262

PSHU3_ECOLI
SHUFFLON PROTEIN B

ESCHERICHIA COLI

224-262

PSHU4_ECOLI
SHUFFLON PROTEIN B′

ESCHERICHIA COLI

224-262

PSHU5_ECOLI
SHUFFLON PROTEIN C

ESCHERICHIA COLI

224-262
402-429

PSHU6_ECOLI
SHUFFLON PROTEIN C′

ESCHERICHIA COLI

224-262

PSHU7_ECOLI
SHUFFLON PROTEIN D′

ESCHERICHIA COLI

224-262

PSINR_BACLI
SINR PROTEIN

BACILLUS LICHENIFORMIS

9-36
43-80

PSINR_BACSU
SINR PROTEIN

BACILLUS SUBTILIS

9-36
43-70

PSLAP_ACEKI
CELL SURFACE PROTEIN

ACETOGENIUM KIVUI

237-264
282-309
313-453
458-489
517-544
563-593
641-685
726-753

PRECURSOR

PSLPA_ECOLI
PROPHAGE CP4-57

ESCHERICHIA COLI

93-136

INTEGRASE

PSMF_ECOLI
SMF PROTEIN

ESCHERICHIA COLI

24-51

PSMPB_ECOLI
SMALL PROTEIN B

ESCHERICHIA COLI

27-61
90-117

PSMP_ECOLI
SMP PROTEIN PRECURSOR

ESCHERICHIA COLI

71-98

PSMTB_SYNP7
TRANSCRIPTIONAL

SYNECHOCOCCUS SP
62-96

REPRESSOR SMTB

PSODF_COXBU
SUPEROXIDE DISMUTASE

COXIELLA BURNETII

116-143

PSODF_ECOLI
SUPEROXIDE DISMUTASE

ESCHERICHIA COLI

115-142

PSODF_METTH
SUPEROXIDE DISMUTASE

METHANOBACTERIUM

25-52

THERMOAUTOTROPHICU

PSODF_PHOLE
SUPEROXIDE DISMUTASE

PHOTOBACTERIUM LEIOGNATHI

22-63

PSODM_PROFR
SUPEROXIDE DISMUTASE

PROPIONIBACTERIUM

164-191

FREUDENREICHII

PSOHB_ECOLI
SOHB PROTEIN PRECURSOR

ESCHERICHIA COLI

7-48
70-97
273-300

PSOPB_ECOLI
SOPB PROTEIN

ESCHERICHIA COLI

252-279

PSOXR_ECOLI
SOXR PROTEIN

ESCHERICHIA COLI

16-63

PSP0J_BACSU
STAGE 0 SPORULATION

BACILLUS SUBTILIS

131-158

PROTEIN J

PSP2A_BACME
STAGE II SPORULATION

BACILLUS MEGATERIUM

19-53

PROTEIN AA

PSP2A_BACSU
STAGE II SPORULATION

BACILLUS SUBTILIS

21-55

PROTEIN AA

PSP2B_BACLI
STAGE II SPORULATION

BACILLUS LICHENIFORMIS

42-69

PROTEIN AB

PSP2B_BACME
STAGE II SPORULATION

BACILLUS MEGATERIUM

36-73

PROTEIN AB

PSP2D_BACSU
STAGE II SPORULATION

BACILLUS SUBTILIS

134-161

PROTEIN D

PSP2G_BACTK
POSSIBLE ASPARTYL

BACILLUS THURINGIENSIS

4-36
117-144

PROTEASE

PSP2J_BACSU
STAGE II SPORULATION

BACILLUS SUBTILIS

14-44
463-500

PROTEIN J

PSP3D_BACSU
STAGE III SPORULATION

BACILLUS SUBTILIS

9-36
52-86

PROTEIN D

PSP3J_BACSU
STAGE III SPORULATION

BACILLUS SUBTILIS

44-75

PROTEIN J PRECURSOR

PSP4A_BACSU
STAGE IV SPORULATION

BACILLUS SUBTILIS

139-180

PROTEIN A

PSP4B_BACSU
STAGE IV SPORULATION

BACILLUS SUBTILIS

39-66

PROTEIN B

PSP4G_BACSU
STAGE IV SPORULATION

BACILLUS SUBTILIS

251-278

PROTEIN FB

PSP5A_BACSU
STAGE V SPORULATION

BACILLUS SUBTILIS

9-36

PROTEIN AF

PSPAA_STRDO
ANTIGEN I

STREPTOCOCCUS DOWNEI

184-218

PSPAB_BACSU
SUBTILIN BIOSYNTHESIS

BACILLUS SUBTILIS

181-208

117 KD PROTEIN

PSPAC_BACSU
SUBTILIN BIOSYNTHESIS

BACILLUS SUBTILIS

311-338

PROTEIN SPAC

PSPAK_BACSU
SENSOR PROTEIN SPAK

BACILLUS SUBTILIS

80-107
224-251
290-324

PSPAP_STRMU
CELL SURFACE ANTIGEN I/

STREPTOCOCCUS MUTANS

122-276
281-465
538-565
576-630
1071-1098
1155-1182
1377-1430

II PRECURSOR

PSPAR_BACSU
REGULATORY PROTEIN

BACILLUS SUBTILIS

4-31
172-199

PSPAT_BACSU
SUBTILIN TRANSPORT

BACILLUS SUBTILIS

55-82
226-267

PROTEIN SPAT

PSPEC_STRPY
EXOTOXIN TYPE C

STREPTOCOCCUS PYOGENES

12-39

PRECURSOR

PSPIR_SPICI
SPIRALIN

SPIROPLASMA CITRI

82-109
155-182

PSPIR_SPIME
SPIRALIN

SPIROPLASMA MELLIFERUM

195-222

PSPOT_ECOLI
GUAN-3′,5′-BIS(DIPHOS) 3′-

ESCHERICHIA COLI

637-664

PYROPHOSPHOHYDROLA

PSPPA_ECOLI
PROTEASE IV

ESCHERICHIA COLI

278-305

PSQHC_ZYMMO
SQUALENE-HOPENE CYCLASE

ZYMOMONAS MOBILIS

590-617

PSRFA_BACSU
SURFACTIN SYNTHETASE

BACILLUS SUBTILIS

159-186
244-271

SUBUNIT A

PSRP5_ECOLI
SIGNAL RECOGNITION

ESCHERICHIA COLI

301-328

PARTICLE PROTEIN

PSRP5_MYCMY
SIGNAL RECOGNITION

MYCOPLASMA MYCOIDES

21-65
107-141
394-428

PARTICLE PROTEIN

PSSA1_PASHA
SEROTYPE-SPECIFIC ANTIGEN

PASTEURELLA HAEMOLYTICA

151-178
358-385
465-518
529-570
860-904

1 PRECURSOR

PSSAB_STRPA
ADHESIN B PRECURSOR

STREPTOCOCCUS PARASANGUIS

32-59

PSSAB_STRSA
ADHESIN B PRECURSOR

STREPTOCOCCUS SANGUIS

21-59
101-128

PSSB_ECOLI
SINGLE-STRAND BINDING

ESCHERICHIA COLI

68-95

PROTEIN

PSSB_PROMI
SINGLE-STRAND BINDING

PROTEUS MIRABILIS

63-104

PROTEIN

PSSB_SERMA
SINGLE-STRAND BINDING

SERRATIA MERCESCENS

63-104

PROTEIN

PSSP5_STRSA
AGGLUTININ RECEPTOR

STREPTOCOCCUS SANGUIS

131-173
178-287
295-483
565-592
676-710
1081-1131

PRECURSOR

PSTAV_STRAV
STREPTAVIDIN PRECURSOR

STREPTOMYCES AVIDINII

125-152

PSTA_ECOLI
STREPTOTHRICIN ACETYL-

ESCHERICHIA COLI

66-93

TRANSFERASE

PSTC1_STAAU
STAPHYLOCOAGULASE

STAPHYLOCOCCUS AUREUS

90-119
172-199
280-311

PRECURSOR

PSTC2_STAAU
STAPHYLOCOAGULASE

STAPHYLOCOCCUS AUREUS

90-117
264-291

PRECURSOR

PSTC_CLOBE
L-TRANSD TRANSC CONTROL

CLOSTRIDIUM BEIJERINCKII

47-74

PROTEIN

PSTPA_ECOLI
STPA PROTEIN

ESCHERICHIA COLI

36-63

PSTR1_STRGR
INOSAMINE-PHOSPHATE

STREPTOMYCES GRISEUS

183-210

AMIDINOTRANSFERASE 1

PSTRP_STREQ
STREPTOKINASE C

STREPTOCOCCUS EQUISIMILIS

209-236
281-308

PRECURSOR

PSTRP_STRPY
STREPTOKINASE A

STREPTOCOCCUS PYOGENES

209-236

PRECURSOR

PSTRP_STRSP
STREPTOKINASE G

STREPTOCOCCUS SP
209-236
281-308

PRECURSOR

PSUBE_BACSU
MINOR EXTRACELLULAR

BACILLUS SUBTILIS

435-462
522-563
605-639

PROTEASE EPR PREC

PSUBF_BACSU
BACILLOPEPTIDASE F

BACILLUS SUBTILIS

40-67
89-116
121-148
554-597

PRECURSOR

PSUBI_SALTY
SULFATE-BINDING PROTEIN

SALMONELLA TYPHIMURIUM

37-74

PSUBI_SYNP7
SULFATE-BINDING PROTEIN

SYNECHOCOCCUS SP
63-94

PRECURSOR

PSUBI_SYNY3
SULFATE-BINDING PROTEIN

SYNECHOCYSTIS SP
64-91

PRECURSOR

PSUBT_BACLI
SUBTILISIN CARLSBERG

BACILLUS LICHENIFORMIS

191-222

PRECURSOR

PSUBT_BACMS
SUBTILISIN

BACILLUS MESENTERICUS

91-118

PSUBT_BACS9
SUBTILISIN PRECURSOR

BACILLUS SP
36-63
250-277

PSUBT_BACSA
SUBTILISIN AMYLO-

BACILLUS SUBTILIS

197-224

SACCHARITICUS PRECURSOR

PSUBT_BACSD
SUBTILISIN

BACILLUS SUBTILIS

86-117

PSUBT_BACST
SUBTILISIN J PRECURSOR

BACILLUS STEAROTHERMOPHILUS

197-224

PSUBT_BACSU
SUBTILISIN E PRECURSOR

BACILLUS SUBTILIS

197-224

PSUBV_BACSU
MINOR EXTRACELLULAR

BACILLUS SUBTILIS

55-108
613-654
741-768

PROTEASE VPR PRECUR

PSUCC_ECOLI
SUCCINYL-COA SYNTHETASE

ESCHERICHIA COLI

62-89

SYNTHETASE BETA

PSUCP_AGRVI
SUCROSE PHOSPHORYLASE

AGROBACTERIUM VITIS

449-476

PSULA_ENTAE
CELL DIVISION INHIBITOR

ENTEROBACTER AEROGENES

112-139

PSYA_ECOLI
ALANYL-TRNA SYNTHETASE

ESCHERICHIA COLI

257-287
725-752
790-821

PSYD_ECOLI
ASPARTYL-TRNA

ESCHERICHIA COLI

330-357

SYNTHETASE

PSYE_BACST
GLUTAMYL-TRNA

BACILLUS STEAROTHERMOPHILUS

49-76

SYNTHETASE

PSYE_BACSU
GLUTAMYL-TRNA

BACILLUS SUBTILIS

49-76
351-386

SYNTHETASE

PSYE_THETH
GLUTAMYL-TRNA

THERMUS AQUATICUS

405-432

SYNTHETASE

PSYFA_BACSU
PHENYLALANYL-TRNA

BACILLUS SUBTILIS

7-34

SYNTHETASE A CHAIN

PSYFB_BACSU
PHENYLALANYL-TRNA

BACILLUS SUBTILIS

340-367
407-441

SYNTHETASE BETA CHAIN

PSYFB_ECOLI
PHENYLALANYL-TRNA

ESCHERICHIA COLI

546-573
607-634
744-771

SYNTHETASE BETA CHAIN

PSYGB_ECOLI
GLYCYL-TRNA SYNTHETASE

ESCHERICHIA COLI

354-381
487-514

BETA CHAIN

PSYH_STREQ
HISTIDYL-TRNA SYNTHETASE

STREPTOCOCCUS EQUISIMILIS

376-403

PSYI_METTH
ISOLEUCYL-TRNA

METHANOBACTERIUM

1010-1037

SYNTHETASE

THERMOAUTOTROPHICU

PSYK1_ECOLI
LYSYL-TRNA SYNTHETASE

ESCHERICHIA COLI

283-310

PSYK2_ECOLI
LYSYL-TRNA SYNTHETASE,

ESCHERICHIA COLI

45-72
283-310

HEAT INDUCIBLE

PSYL_ECOLI
LEUCYL-TRNA SYNTHETASE

ESCHERICHIA COLI

220-247

PSYM_BACST
METHIONYL-TRNA

BACILLUS STEAROTHERMOPHILUS

69-99

SYNTHETASE

PSYM_ECOLI
METHIONYL-TRNA

ESCHERICHIA COLI

87-124

SYNTHETASE

PSYP_ECOLI
PROLYL-TRNA SYNTHETASE

ESCHERICHIA COLI

541-568

PSYQ_ECOLI
GLUTAMINYL-TRNA

ESCHERICHIA COLI

394-421

SYNTHETASE

PSYRD_PSESY
SYRD PROTEIN

PSEUDOMONAS SYRINGAE

449-483

PSYR_ECOLI
ARGINYL-TRNA SYNTHETASE

ESCHERICHIA COLI

540-574

PSYT1_BACSU
THREONYL-TRNA

BACILLUS SUBTILIS

401-428
605-639

SYNTHETASE

PSYV_BACST
VALYL-TRNA SYNTHETASE

BACILLUS STEAROTHERMOPHILUS

603-630
809-843

PSYV_ECOLI
VALYL-TRNA SYNTHETASE

ESCHERICHIA COLI

300-327
882-912
924-951

PSYW_BACST
TRYPTOPHANYL-TRNA

BACILLUS STEAROTHERMOPHILUS

204-231
239-266

SYNTHETASE

PSYY1_BACSU
TYROSYL-TRNA SYNTHETASE

BACILLUS SUBTILIS

81-115
375-409

1

PSYY2_BACSU
TYROSYL-TRNA SYNTHETASE

BACILLUS SUBTILIS

69-96

2

PSYY_BACCA
TYROSYL-TRNA SYNTHETASE

BACILLUS CALDOTENAX

295-322
372-416

PSYY_BACST
TYROSYL-TRNA SYNTHETASE

BACILLUS STEAROTHERMOPHILUS

295-322
372-416

PT1M1_ECOLI
ENZYME ECOR124/3 1 M

ESCHERICHIA COLI

126-167
405-432
485-512

PROTEIN

PT1R1_—ECOLI
ENZYME ECOR124/3 R

ESCHERICHIA COLI

30-57
624-651
702-736
768-795
843-870
966-1000

PROTEIN

PT1R_ECOLI
ENZYME ECOK 1 R PROTEIN

ESCHERICHIA COLI

158-263

PT1S1_ECOLI
ENZYME ECOR124/3 I

ESCHERICHIA COLI

154-181

SPECIFICITY PROTEIN

PT1SA_ECOLI
ENZYME ECOA I SPECIFICITY

ESCHERICHIA COLI

279-306

PROTEIN

PT1SB_ECOLI
ENZYME ECOB I SPECIFICITY

ESCHERICHIA COLI

278-312

PROTEIN

PT1SD_ECOLI
ENZYME ECOD I SPECIFICITY

ESCHERICHIA COLI

249-283

PROTEIN

PT1SE_ECOLI
ENZYME ECOE I SPECIFICITY

ESCHERICHIA COLI

279-306

PROTEIN

PT1S_SALPO
ENZYME SPECIFICITY

SALMONELLA POTSDAM

396-423

PROTEIN

PT1S_SALTY
ENZYME SPECIFICITY

SALMONELLA TYPHIMURIUM

194-221
276-304
402-429

PROTEIN

PT257_ECOLI
TYPE IIS RESTRICTION

ESCHERICHIA COLI

138-196
265-295
406-440
639-682
687-728
926-954

ENZYME ECO571

PT2A1_ACICA
TYPE II RESTRICTION

ACINETOBACTER CALCOACETICUS

49-76

ENZYME ACCI

PT2BF_BACSU
TYPE II RESTRICTION

BACILLUS SUBTILIS

3-43
135-223
236-280

ENZYME BSUFI

PT2BR_BACSU
TYPE II RESTRICTION

BACILLUS SUBTILIS

3-45
338-384
401-430
532-559

ENZYME BSURI

PT2C1_CITFR
TYPE II RESTRICTION

CITROBACTER FREUNDII

35-62

ENZYME CFRBI

PT2C1_HERAU
TYPE II RESTRICTION

HERPETOSIPHON AURANTIACUS

176-215

ENZYME HGICI

PT2C2_HERAU
TYPE II RESTRICTION

HERPETOSIPHON AURANTIACUS

243-273

ENZYME HGICII

PT2D1_DESDN
TYPE II RESTRICTION

DESULFOVIBRIO DESULFURICANS

85-122

ENZYME DDEI

PT2D1_STRPN
TYPE II RESTRICTION

STREPTOCOCCUS PNEUMONIAE

213-240

ENZYME DPNI

PT2E1_ECOLI
TYPE II RESTRICTION

ESCHERICHIA COLI

2-29

ENZYME ECORI

PT2E2_ECOLI
TYPE II RESTRICTION

ESCHERICHIA COLI

333-360

ENZYME ECORII

PT2E5_ECOLI
TYPE II RESTRICTION

ESCHERICHIA COLI

128-155
214-241

ENZYME ECORV

PT2F1_FLAOK
TYPE IIS RESTRICTION

FLAVOBACTERIUM OKEANOKOITES

302-336

ENZYME FOKI

PT2H1_HAEIN
TYPE II RESTRICTION

HAEMOPHILUS INFLUENZAE

6-38
69-96

ENZYME HINFI

PT2H1_HAEPA
TYPE II RESTRICTION

HAEMOPHILUS PARAINFLUENZAE

77-125

ENZYME HPAI

PT2H2_HAEHA
TYPE II RESTRICTION

HAEMOPHILUS HAEMOLYTICUS

23-50

ENZYME HHAII

PT2H2_HAEIN
TYPE II RESTRICTION

HAEMOPHILUS INFLUENZAE

97-138

ENZYME HINCII

PT2K1_KLEPN
TYPE II RESTRICTION

KLEBSIELLA PENUMONIAE

18-45
178-205

ENZYME KPNI

PT2M1_MORBO
TYPE II RESTRICTION

MORAXELLA BOVIS

15-61
187-215
225-252

ENZYME MBOI

PT2M2_MORBO
TYPE IIS RESTRICTION

MORAXELLA BOVIS

3-30
158-185
337-364

ENZYME MBOII

PT2MZ_METTF
POSSIBLE TYPE II

METHANOBACTERIUM

105-151

RESTRICTION ENZYME MTHZI

THERMOFORMICICUM

PT2NG_NEIGO
TYPE II RESTRICTION

NEISSERIA GONORRHOEAE

117-144
231-258

ENZYME NGOPII

PT2S1_STRSA
TYPE II RESTRICTION

STREPTOCOCCUS SANGUIS

5-32
41-68
395-446

ENZYME STSI

PT2S2_SHISO
TYPE II RESTRICTION

SHIGELLA SONNEI

206-243
258-288

ENZYME SSOII

PT2S3_STAAU
TYPE II RESTRICTION

STAPHYLOCOCCUS AUREUS

70-102

ENZYME SAU3AI

PT2SI_SALIN
TYPE II RESTRICTION

SALMONELLA INFANTIS

144-181

ENZYME SINI

PT2SM_SERMA
TYPE II RESTRICTION

SERRATIA MARCESCENS

61-88

ENZYME SMAI

PT2TA_THEAQ
TYPE II RESTRICTION

THERMUS AQUATICUS

147-181
203-237

ENZYME TAQI

PT3MO_ECOLI
SYSTEM ECOP15 ENZYME

ESCHERICHIA COLI

37-71
75-102
236-296
378-405

MOD

PT3RE_BACCE
SYSTEM ENZYME RES

BACILLUS CEREUS

62-89
256-283

PTA47_TREPA
47 KD MEMBRANE ANTIGEN

TREPONEMA PALLIDUM

26-53

PRECURSOR

PTA53_TREDE
53 KD MEMBRANE ANTIGEN

TREPONEMA DENTICOLA

99-126
298-329

A PRECUSOR

PTACY_BACAL
ALVEOLYSIN PRECURSOR

BACILLUS ALVEI

272-302
374-401

PTACY_CLOPE
PERFRINGOLYSIN O

CLOSTRIDIUM PERFRINGENS

270-311
372-434

PRECURSOR

PTACY_LISIV
IVANOLYSIN PRECURSOR

LISTERIA IVANOVII

93-120
167-195
396-423

PTACY_LISMO
LISTERIOLYSIN O

LISTERIA MONOCYTOGENES

98-125
168-196
295-329
397-424

PRECURSOR

PTACY_LISSE
SEELIGERIOLYSIN

LISTERIA SEELIGERI

99-126
296-323
349-376
398-463

PRECURSOR

PTACY_STRPN
PNEUMOLYSIN

STREPTOCOCCUS PNEUMONIAE

234-272

PTACY_STRPY
STREPTOLYSIN O

STREPTOCOCCUS PYOGENES

86-133
355-382
440-470

PRECURSOR

PTAGB_BACSU
TECHOIC ACID BIOSYN

BACILLUS SUBTILIS

42-69

PROTEIN B PREC

PTAGC_BACSU
TECHOIC ACID BIO-

BACILLUS SUBTILIS

348-375

SYNTHESIS PROTEIN C

PTAGE_BACSU
TECHOIC ACID BIO-

BACILLUS SUBTILIS

59-93
144-181
185-243
565-592
600-627

SYNTHESIS PROTEIN E

PTAGF_BACSU
TECHOIC ACID BIO-

BACILLUS SUBTILIS

182-209

SYNTHESIS PROTEIN F

PTBP1_NEIGO
TRANSFERRIN-BINDING

NEISSERIA GONORRHOEAE

39-73
127-164
398-425
810-841

PROTEIN 1 PRECURSOR

PTBUD_PSEPI
PHENOL 2-MONOOXYGENASE

PSEUDOMONAS PICKETTII

38-65
227-254
375-402

PTCDT_SALTY
TRANSCRIPTIONAL

SALMONELLA TYPHIMURIUM

105-132

REGULATORY PROTEIN TCDT

PTCPC_VIBCH
MEMBRANE PROTEIN TCPC

VIBRIO CHOLERAE

20-47
83-128
199-233
263-290
344-375
459-486

PRECURSOR

PTCPE_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

24-59
77-111

PROTEIN TCPE

PTCPF_VIBCH
TCP PILUS SECRETION

VIBRIO CHOLERAE

32-66
211-238

PROTEIN TCPF

PTCPH_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

95-122

PROTEIN TCPH

PTCIP_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

25-52
234-261
279-306
346-379

PROTEIN TCPI

PTCPN_VIBCH
TCP PILUS VIRULENCE

VIBRIO CHOLERAE

48-75

REGULATORY PROTEIN

PTCPO_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

230-257

PROTEIN TCPO

PTCPY_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

121-148

PROTEIN TCPY

PTCPZ_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

44-85

PROTEIN TCPZ

PTCR2_BACSU
TETRACYCLINE RESISTANCE

BACILLUS SUBTILIS

404-434

PROTEIN

PTCR_BACST
TETRACYCLINE RESISTANCE

BACILLUS STEAROTHERMOPHILUS

422-453

PROTEIN

PTCR_STAAU
TETRACYCLINE RESISTANCE

STAPHYLOCOCCUS AUREUS

404-431

PROTEIN

PTCR_STRAG
TETRACYCLINE RESISTANCE

STREPTOCOCCUS AGALACTIAE

422-453

PROTEIN

PTCR_STRPN
TETRACYCLINE RESISTANCE

STREPTOCOCCUS PNEUMONIAE

422-453

PROTEIN

PTDCA_ECOLI
TDCABC OPERON TRANS-

ESCHERICHIA COLI

210-239

CRIPTIONAL ACTIVATOR

PTDCC_ECOLI
TDCC PROTEIN

ESCHERICHIA COLI

334-361

PTEE6_STRPY
TRYPSIN-RESIST SURFACE

STREPTOCOCCUS PYOGENES

137-164
361-395
400-437

T6 PROTEIN PREC

PTER2_ECOLI
TETRACYCLINE REPRESSOR

ESCHERICHIA COLI

8-36

PROTEIN CLASS B

PTER4_ECOLI
TETRACYCLINE REPRESSOR

ESCHERICHIA COLI

183-210

PROTEIN CLASS D

PTERA_ALCSP
TELLURIUM RESISTANCE

ALCALIGENES SP
48-86

PROTEIN TERA

PTESB_ECOLI
ACYL-COA THIOESTERASE II

ESCHERICHIA COLI

4-31

PTET5_ENTFA
TETRACYCLINE RESISTANCE

ENTEROCOCCUS FAECALIS

2-36
130-159
179-206
217-244

PROTEIN TETM

PTET9_ENTFA
TETRACYCLINE RESISTANCE

ENTEROCOCCUS FAECALIS

2-36
130-159
217-244
260-287

PROTEIN TETM

PTETC_ECOLI
TRANSPOSON TN10 TETC

ESCHERICHIA COLI

72-106
116-158

PROTEIN

PTETM_STRLI
TETRACYCLINE RESISTANCE

STREPTOMYCES LIVIDANS

82-109

PROTEIN

PTETM_UREUR
TETRACYCLINE RESISTANCE

UREAPLASMA UREALYTICUM

2-36
130-159
217-244
260-287

PROTEIN TETM

PTETO_CAMCO
TETRACYCLINE RESISTANCE

CAMPYLOBACTER COLI

2-29

PROTEIN TETO

PTETO_CAMJE
TETRACYCLINE RESISTANCE

CAMPYLOBACTER JEJUNI

2-36

PROTEIN TETO

PTETO_STRMU
TETRACYCLINE RESISTANCE

STREPTOCOCCUS MUTANS

2-29

PROTEIN TETO

PTETX_BACFR
TETRACYCLINE RESISTANCE

BACTEROIDES FRAGILIS

25-62

PROTEIN

PTETX_CLOTE
TETANUS TOXIN PRECURSOR

CLOSTRIDIUM TETANI

274-304
540-567
615-642
692-719
985-1012
1240-1277

PTF2B_PYRWO
TRANS INITIATION FACTOR

PYROCOCCUS WOESEI

218-258

IIB HOMOLOG

PTFDC_ALCEU
CHLOROCATECHOL 1,2-

ALCALIGENES EUTROPHUS

2-33

DIOXYGENASE

PTGT_ECOLI
QUEUINE TRNA-RIBOSYL-

ESCHERICHIA COLI

173-200

TRANSFERASE

PTHD1_LACLA
THREONINE DEHYDRATASE

LACTOCOCCUS LACTIS

267-303

BIOSYNTHETIC

PTHD2_ECOLI
THREONINE DEHYDRATASE

ESCHERICHIA COLI

293-320

CATABOLIC

PTHDF_BACSU
FURAN OXIDATION PROTEIN

BACILLUS SUBTILIS

153-180
192-226
282-316
391-418

THDF

PTHDF_ECOLI
FURAN OXIDATION PROTEIN

ESCHERICHIA COLI

226-260
404-431

THDF

PTHDF_PSEPU
FURAN OXIDATION PROTEIN

PSEUDOMONAS PUTIDA

226-260

THDF

PTHER_BACCE
THERMOLYSIN

BACILLUS CEREUS

4-38
240-267

PTHER_BACST
THERMOLYSIN PRECURSOR

BACILLUS STEAROTHERMOPHILUS

45-72

PTHER_BACTH
THERMOLYSIN

BACILLUS THERMO-
86-113

PROTEOLYTICUS

PTHET_THEVU
THERMITASE

THERMOACTINOMYCES VULGARIS

131-161

PTHIC_ECOLI
THIC PROTEIN

ESCHERICHIA COLI

232-263
301-328

PTHIG_ECOLI
THIG PROTEIN

ESCHERICHIA COLI

138-165

PTHPS_SULAC
THERMOPSIN PRECURSOR

SULFOLOBUS ACIDOCALDARIUS

135-172
199-233

PTHRC_BRELA
THREONINE SYNTHASE

BREVIBACTERIUM

288-315

LACTOFERMENTUM

PTHTR_SACER
PUTATIVE THIOSULFATE

SACCHAROPOLYSPORA ERYTHRAEA

69-96

SULFURTRANSFERASE

PTIG_ECOLI
TRIGGER FACTOR

ESCHERICHIA COLI

144-171

PTMPA_TREPA
TREPONEMAL MEMBRANE

TREPONEMA PALLIDUM

236-266

PROTEIN A PRECURSOR

PTMPB_TREPA
TREPONEMAL MEMBRANE

TREPONEMA PALLIDUM

44-71

PROTEIN B PRECURSOR

PTMPB_TREPH
TREPONEMAL MEMBRANE

TREPONEMA PHAGEDENIS

41-68

PROTEIN B PRECURSOR

PTNAB_ECOLI
LOW AFFINITY TRYPTOPHAN

ESCHERICHIA COLI

74-108

PERMEASE

PTNP4_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

52-79
322-349

PTNP7_ENTFA
TRANSPOSON TN917

ENTEROCOCCUS FAECALIS

59-97
111-138

RESOLVASE

PTNPA_STAAU
TRANSPOSASE A

STAPHYLOCOCCUS AUREUS

151-178

PTNPB_STAAU
TRANSPOSASE B

STAPHYLOCOCCUS AUREUS

589-625

PTNPI_BACTU
TNP I RESOLVASE

BACILLUS THURINGIENSIS

7-62
65-92
174-201

PTNSB_ECOLI
TRANSPOSON TN7 TRANS-

ESCHERICHIA COLI

99-126
510-537

POSITION PROTEIN TNSB

PTNSC_ECOLI
TRANSPOSON TN7 TRANS-

ESCHERICHIA COLI

32-59
314-341

POSITION PROTEIN TNSC

PTNSD_ECOLI
TRANSPOSON TN7 TRANS-

ESCHERICHIA COLI

339-366

POSITION PROTEIN TNSD

PTNSE_ECOLI
TRANSPOSON TN7 TRANS-

ESCHERICHIA COLI

463-490

POSITION PROTEIN TNSE

PTOD1_PSEPU
TOLUENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

36-63

ALPHA SUBUNIT

PTOD2_PSEPU
TOLUENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

119-153

BETA SUBUNIT

PTODA_PSEPU
TOLUENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

179-213

SYSTEM

PTODJ_PSEPU
TODF PRODUCT HYDRATASE

PSEUDOMONAS PUTIDA

143-170

PTOLA_ECOLI
TOLA PROTEIN

ESCHERICHIA COLI

101-138

PTOLC_ECOLI
OUTER MEMBRANE PROTEIN

ESCHERICHIA COLI

144-178
184-211
239-266
348-375
383-443

TOLC PRECURSOR

PTOP1_SYNP7
DNA TOPOISOMERASE I

SYNECHOCOCCUS SP
203-230

PTORA_ECOLI
TRIMETHYLAMINE-N-OXIDE

ESCHERICHIA COLI

797-824

REDUCTASE

PTOX1_BORPE
PERTUSSIS TOXIN SUBUNIT

BORDETELLA PERTUSSIS

179-206

1 (S1) PRECURSOR

PTOX2_BORPE
PERTUSSIS TOXIN SUBUNIT

BORDETELLA PERTUSSIS

58-85

2 (S2) PRECURSOR

PTOXA_CLODI
TOXIN A

CLOSTRIDIUM DIFFICILE

20-88
99-159
204-231
342-369
373-414
847-962
966-994
997-1024
1348-1402

PTOXA_PSEAE
EXOTOXIN A PRECURSOR

PSEUDOMONAS AERUGINOSA

470-497

PTOXB_CLODI
TOXIN B

CLOSTRIDIUM DIFFICILE

38-72
133-163
199-241
825-869
923-950
1334-1388
1403-1433
1506-1565
1716-1747

PTOXS_VIBCH
TRANSMEMBRANE

VIBRIO CHOLERAE

13-40

REGULATORY PROTEIN TOXS

PTPF1_TREPA
ANTIGEN TPF 1

TREPONEMA PALLIDUM

106-143

PTPIS_ECOLI
TRIOSEPHOSPHATE

ESCHERICHIA COLI

83-110

ISOMERASE

PTPIS_MORSP
TRIOSEPHOSPHATE

MORAXELLA SP
139-166

ISOMERASE

PTPR_PORGI
THIOL PROTEASE

PORPHYROMONAS GINGIVALIS

117-144

PRECURSOR

PTR2M_AGRT3
TRYPTOPHAN 2-MONO-

AGROBACTERIUM TUMEFACIENS

239-266
501-529

OXYGENASE

PTR2M_AGRT4
TRYPTOPHAN 2-MONO-

AGROBACTERIUM TUMEFACIENS

239-266
501-529

OXYGENASE

PTR2M_PSESS
TRYPTOPHAN 2-MONO-

PSEUDOMONAS SYRINGAE

41-68

OXYGENASE

PTRA1_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

58-113

PTRA2_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

11-38
58-113

PTRA3_ECOLI
TRANSPOSASE

ESCHERICHIA COLI

721-755

PTRA3_RHIME
TRANSPOSASE

RHIZOBIUM MELILOTI

179-206

PTRA3_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

33-60
68-95

PTRA4_ECOLI
TRANSPOSASE

ESCHERICHIA COLI

181-208
308-340
720-754

PTRA6_ECOLI
TRANSPOSASE

ESCHERICHIA COLI

51-78

PTRA6_SHISO
TRANSPOSASE

SHIGELLA SONNEI

51-78
200-227
231-258

PTRA7_ECOLI
TRANSPOSASE

ESCHERICHIA COLI

729-756

PTRA9_MYCTU
PUTATIVE TRANSPOSASE

MYCOBACTERIUM TUBERCULOSIS

159-186

PTRAB_BACTB
IS231B PROBABLE

BACILLUS THURINGINESIS

281-308
419-446

TRANSPOSASE

PTRAC_BACTB
IS231C PROBABLE

BACILLUS THIRINGIENSIS

281-308
419-446

TRANSPOSASE

PTRAC_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

4-31
45-72

PTRAX_BACTB
IS231 PROBABLE

BACILLUS THURINGIENSIS

281-308
419-446

TRANSPOSASE

PTRA_BACTU
TRANSPOSASE

BACILLUS THURINGIENSIS

93-127
509-539

PTRA_PSEAE
TRANSPOSASE

PSEUDOMONAS AERUGINOSA

127-154
721-755

PTRB1_ECOLI
TRAB PROTEIN

ESCHERICHIA COLI

113-143

PTRBF_ECOLI
TRBF PROTEIN

ESCHERICHIA COLI

12-39

PTRB1_ECOLI
TRB1 PROTEIN

ESCHERICHIA COLI

70-97

PTRC1_ECOLI
TRAC-1 PROTEIN

ESCHERICHIA COLI

1006-1058

PTRC2_ECOLI
TRAC-2 PROTEIN

ESCHERICHIA COLI

1102-1149

PTRC3_ECOLI
TRAC-3 PROTEIN

ESCHERICHIA COLI

884-931

PTRD1_ECOLI
TRAD PROTEIN

ESCHERICHIA COLI

297-348

PTREA_ECOLI
PERIPLASMIC TREHALASE

ESCHERICHIA COLI

362-403
477-508

PRECURSOR

PTREC_ECOLI
AMYLOTREHALASE

ESCHERICHIA COLI

280-307

PTRFA_ECOLI
TRFA TRANSCRIPTIONAL

ESCHERICHIA COLI

5-32
105-132

REPRESSOR PROTEIN

PTRG1_ECOLI
TRAG PROTEIN

ESCHERICHIA COLI

61-88
630-657
831-858
865-895

PTRG5_ECOLI
TRAG PROTEIN

ESCHERICHIA COLI

196-223

PTRG6_ECOLI
TRAG PROTEIN

ESCHERICHIA COLI

195-222
518-545

PTRI1_ECOLI
TRAI PROTEIN

ESCHERICHIA COLI

155-209
597-624
887-914
1350-1377

PTRI2_ECOLI
TRAI PROTEIN

ESCHERICHIA COLI

155-209
597-624
887-914
1350-1377

PTRI5_ECOLI
TRAI PROTEIN

ESCHERICHIA COLI

47-74
328-371

PTRJ4_ECOLI
TRAJ PROTEIN

ESCHERICHIA COLI

36-63

PTRM8_ECOLI
TRAM PROTEIN

ESCHERICHIA COLI

5-32

PTRMA_ECOLI
TRNA (URACIL-5-)-METHYL-

ESCHERICHIA COLI

107-137

TRANSFERASE

PTRMD_ECOLI
TRNA (GUANINE-N1)-

ESCHERICHIA COLI

115-142
226-253

METHYLTRANSFERASE

PTRPA_BACSU
TRYPTOPHAN SYNTHASE

BACILLUS SUBTILIS

220-247

ALPHA CHAIN

PTRPA_CAUCR
TRYPTOPHAN SYNTHASE

CAULOBACTER CRESCENTUS

241-275

ALPHA CHAIN

PTRPA_PSEAE
TRYPTOPHAN SYNTHASE

PSEUDOMONAS AERUGINOSA

176-203

ALPHA CHAIN

PTRPB_ACICA
TRYPTOPHAN SYNTHASE

ACINETOBACTER CALCOACETICUS

79-113

BETA CHAIN

PTRPB_BACSU
TRYPTOPHAN SYNTHASE

BACILLUS SUBTILIS

76-103
318-345

BETA CHAIN

PTRPB_BRELA
TRYPTOPHAN SYNTHASE

BREVIBACTERIUM

172-199

BETA CHAIN

LACTOFERMENTUM

PTRPB_LACCA
TRYPTOPHAN SYNTHASE

LACTOBACILLUS CASEI

83-117

BETA CHAIN

PTRPB_LACLA
TRYPTOPHAN SYNTHASE

LACTOBACILLUS LACTIS

77-104
164-191

BETA CHAIN

PTRPB_VIBPA
TRYPTOPHAN SYNTHASE

VIBRIO PARAHAEMOLYTICUS

56-83

BETA CHAIN

PTRPC_BRELA
INDOLE-3-GLYCEROL

BREVIBACTERIUM

229-256

PHOSPHATE SYNTHASE

LACTOFERMENTUM

PTRPC_ECOLI
INDOLE-3-GLYCEROL

ESCHERICHIA COLI

205-232

PHOSPHATE SYNTHASE

PTRPC_LACLA
INDOLE-3-GLYCEROL

LACTOCOCCUS LACTIS

148-175

PHOSPHATE SYNTHASE

PTRPC_VIBPA
INDOLE-3-GLYCEROL

VIBRIO PARAHAEMOLYTICUS

346-376

PHOSPHATE SYNTHASE

PTRPD_ACICA
ANTHRANILATE PHOSPHOR-

ACINETOBACTER CALCOACETICUS

223-250
260-294

IBOSYLTRANSFERASE

PTRPD_PSEAE
ANTHRANILATE PHOSPHOR-

PSEUDOMONAS AERUGINOSA

205-232

IBOSYLTRANSFERASE

PTRPD_PSEPU
ANTHRANILATE PHOSPHOR-

PSEUDOMONAS PUTIDA

205-232

IBOSYLTRANSFERASE

PTRPD_VIBPA
ANTHRANILATE PHOSPHOR-

VIBRIO PARAHAEMOLYTICUS

2-29

IBOSYLTRANSFERASE

PTRPE_BACPU
ANTHRANILATE SYNTHASE

BACILLUS PUMILUS

33-60

COMPONENT I

PTRPE_CLOTM
ANTHRANILATE SYNTHASE

CLOSTRIDIUM THERMOCELLUM

165-226

COMPONENT I

PTRPE_LACLA
ANTHRANILATE SYNTHASE

LACTOCOCCUS LACTIS

142-191

COMPONENT I

PTRPE_LEPBI
ANTHRANILATE SYNTHASE

LEPTOSPIRA BIFLEXA

145-179

COMPONENT I

PTRPE_RHIME
ANTHRANILATE SYNTHASE

RHIZOBIUM MELILOTI

139-166

PTRPE_SALTY
ANTHRANILATE SYNTHASE

SALMONELLA TYPHIMURIUM

191-218

COMPONENT I

PTRPE_SULSO
ANTHRANILATE SYNTHASE

SULFOLOBUS SOLFATARICUS

143-183
298-328

COMPONENT I

PTRPE_VIBPA
ANTHRANILATE SYNTHASE

VIBRIO PARAHAEMOLYTICUS

9-36
54-81

COMPONENT I

PTRPG_ACICA
ANTHRANILATE SYNTHASE

ACINETOBACTER CALCOACETICUS

12-39

COMPONENT II

PTRPG_AZOBR
ANTHRANILATE SYNTHASE

AZOSPIRILLUM BRASILENSE

4-31

COMPONENT II

PTRPG_ECOLI
ANTHRANILATE SYNTHASE

ESCHERICHIA COLI

5-32

COMPONENT II

PTRPG_LACLA
ANTHRANILATE SYNTHASE

LACTOCOCCUS LACTIS

4-31

COMPONENT II

PTRPG_PSEAE
ANTHRANILATE SYNTHASE

PSEUDOMONAS AERUGINOSA

12-39

COMPONENT II

PTRPG_SALTY
ANTHRANILATE SYNTHASE

SALMONELLA TYPHIMURIUM

5-32

COMPONENT II

PTRPG_SERMA
ANTHRANILATE SYNTHASE

SERRATIA MARCESCENS

9-43

COMPONENT II

PTRPG_SHIDY
ANTHRANILATE SYNTHASE

SHIGELLA DYSENTERIAE

5-32

COMPONENT II

PTRPO_PSEAE
PUTATIVE TRANSCRIPTIONAL

PSEUDOMONAS AERUGINOSA

147-174

REGULATOR

PTRS2_ECOLI
TRAS PROTEIN

ESCHERICHIA COLI

85-119

PTRT3_ECOLI
RESISTANCE PROTEIN

ESCHERICHIA COLI

184-221

PRECURSOR

PTRY1_SALTY
TRAY PROTEIN

SALMONELLA TYPHIMURIUM

30-57

PTRYP_STRGR
TRYPSIN PRECURSOR

STREPTOMYCES GRISEUS

80-107

PTSR_STRAZ
RRNA METHYLTRANSFERASE

STREPTOMYCES AZUREUS

126-153

PTSST_STAAU
TOXIC SHOCK SYNDROME

STAPHYLOCOCCUS AUREUS

29-63
102-129

TOXIN-1 PRECURSOR

PTSX_ECOLI
CHANNEL-FORMING PROTEIN

ESCHERICHIA COLI

225-252

TSX PRECURSOR

PTTK_ECOLI
HYPOTHETICAL 24.3 KD

ESCHERICHIA COLI

81-115

PROTEIN

PTUS_ECOLI
SITE-BINDING PROTEIN

ESCHERICHIA COLI

57-91
107-134

PTYCA_BACBR
TRYOCIDINE SYNTHETASE I

BACILLUS BREVIS

117-147
534-561
1019-1051

PTYF1_TREPE
ANTIGEN TYF1

TREPONEMA PERTENUE

106-143

PTYRA_BACSU
POSSIBLE PREPHENATE

BACILLUS SUBTILIS

244-271
312-342

DEHYDROGENASE

PTYRA_ECOLI
CHORISMATE MUTASE

ESCHERICHIA COLI

329-370

PTYRR_ECOLI
TRANSCRIPTIONAL

ESCHERICHIA COLI

483-510

REGULATORY PROTEIN TYRR

PTYSY_LACCA
THYMIDYLATE SYNTHASE

LACTOBACILLUS CASEI

139-173

PTYSY_LACLA
THYMIDYLATE SYNTHASE

LACTOCOCCUS LACTIS

75-109

PTYSY_STAAU
THYMIDYLATE SYNTHASE

STAPHYLOCOCCUS AUREUS

69-96

PUHPB_ECOLI
SENSOR PROTEIN UHPB

ESCHERICHIA COLI

276-303
316-343

PUHPB_SALTY
SENSOR PROTEIN UHPB

SALMONELLA TYPHIMURIUM

276-303
316-343

PUMUC_SALTY
UMUC PROTEIN

SALMONELLA TYPHIMURIUM

204-231

PUPP_ECOLI
URACIL PHOSPHORIBOSYL-

ESCHERICHIA COLI

30-57

TRANSFERASE

PURAA_ECOLI
URACIL PERMEASE

ESCHERICHIA COLI

350-384

PURE1_HELPY
UREASE ALPHA SUBUNIT

HELICOBACTER PYLORI

15-42

PURE1_PROMI
UREASE ALPHA SUBUNIT

PROTEUS MIRABILIS

72-99

PURE1_PROVU
UREASE ALPHA SUBUNIT

PROTEUS VULGARIS

72-99

PURE1_UREUR
UREASE ALPHA SUBUNIT

UREAPLASMA UREALYTICUM

13-40
483-517

PURE2_HELPY
UREASE BETA SUBUNIT

HELICOBACTER PYLORI

62-99

PURED_HELPY
UREASE OPERON URED

HELICOBACTER PYLORI

17-44

PROTEIN

PUREE_PROMI
UREASE ACCESSORY

PROTEUS MIRABILIS

57-84

PROTEIN UREE

PUREF_KLEAE
UREASE ACCESSORY

KLEBSIELLA AEROGENES

20-47

PROTEIN UREF PRECURSOR

PUS45_LACLA
SECRETED 45 KD PROTEIN

LACTOCOCCUS LACTIS

44-98
150-223
276-303

PRECURSOR

PUSHA_ECOLI
P-SUGAR HYDROLASE

ESCHERICHIA COLI

56-83

PRECURSOR

PUSHA_SALTY
SILENT PROTEIN USHA (0)

SALMONELLA TYPHIMURIUM

56-83

PRECURSOR

PUVRA_ECOLI
EXCINUCLEASE ABC

ESCHERICHIA COLI

527-554
871-898

SUBUNIT A

PUVRA_MICLU
EXCINUCLEASE ABC

MICROCOCCUS LUTEUS

579-606
619-646
684-718
922-949

SUBUNIT A

PUVRA_PARDE
EXCINUCLEASE ABC

PARACOCCUS DENITRIFICANS

33-60

SUBUNIT A

PUVRC_BACSU
EXCINUCLEASE ABC

BACILLUS SUBTILIS

342-372
511-538

SUBUNIT C

PUVRC_ECOLI
EXCINUCLEASE ABC

ESCHERICHIA COLI

37-64
332-362

SUBUNIT C

PUVRD_ECOLI
HELICASE II

ESCHERICHIA COLI

280-307

PVANA_ENTFC
VANCOMYCIN RESISTANCE

ENTEROCOCCUS FAECIUM

182-209

PROTEIN VANA

PVANC_ENTGA
VANCOMYCIN RESISTANCE

ENTEROCOCCUS GALLINARUM

177-211

PROTEIN VANC

PVIB4_AGRT5
VIRB4 PROTEIN PRECURSOR

AGROBACTERIUM TUMEFACIENS

138-172

PVIB6_AGRT5
VIRB6 PROTEIN

AGROBACTERIUM TUMEFACIENS

190-227

PVIB6_AGRT6
VIRB6 PROTEIN

AGROBACTERIUM TUMEFACIENS

190-227

PVIB6_AGRT9
VIRB6 PROTEIN

AGROBACTERIUM TUMEFACIENS

190-227

PVIBX_AGRT5
VIRB10 PROTEIN

AGROBACTERIUM TUMEFACIENS

32-59
212-239

PVIBX_AGRT6
VIRB10 PROTEIN

AGROBACTERIUM TUMEFACIENS

32-59
211-238

PVIBX_AGRT9
VIRB10 PROTEIN

AGROBACTERIUM TUMEFACIENS

32-59
212-239

PVIC1_AGRRA
VIRC1 PROTEIN

AGROBACTERIUM RHIZOGENES

81-108

TUMEFACIENS

PVIC1_AGRT5
VIRC1 PROTEIN

AGROBACTERIUM TUMEFACIENS

81-108

PVIC1_AGRT6
VIRC1 PROTEIN

AGROBACTERIUM TUMEFACIENS

81-108

PVID3_AGRRA
VIRD3 PROTEIN

AGROBACTERIUM RHIZOGENES

149-176
265-292

PVIRA_AGRT5
WIDE HOST RANGE (WHR)

AGROBACTERIUM TUMEFACIENS

42-76
113-147
657-684

VIRA PROTEIN

PVIRA_AGRT6
WIDE HOST RANGE (WHR)

AGROBACTERIUM TUMEFACIENS

42-69
84-125
653-680

VIRA PROTEIN

PVIRA_AGRT9
WIDE HOST RANGE (WHR)

AGROBACTERIUM TUMEFACIENS

42-69
84-125
653-680

VIRA PROTEIN

PVIRB_SHIFL
VIRB TRANSCRIPTIONAL

SHIGELLA FLEXNERI

37-71
107-134
187-214
252-291

ACTIVATOR

PVIRF_YEREN
VIRULENCE REGULON

YERSINIA ENTEROCOLITICA

16-46

TRANSACTIVATOR

PVIRG_AGRRA
VIRG REGULATORY PROTEIN

AGROBACTERIUM RHIZOGENES

34-61

PVIRL_AGRT6
LIMITED HOST RANGE (LHR)

AGROBACTERIUM TUMEFACIENS

106-157

VIRA PROTEIN

PVISC_ECOLI
VISC PROTEIN

ESCHERICHIA COLI

47-74

PVLPA_MYCHR
VARIANT SURFACE ANTIGEN

MYCOPLASMA HYORHINIS

74-112

A PRECURSOR

PVM03_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

54-81

PROTEIN 3 PRECURSOR

PVM07_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

332-359

PROTEIN 7 PRECURSOR

PVM21_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

330-357

PROTEIN 21 PRECURSOR

PVM24_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

47-143

PROTEIN 24 PRECURSOR

PVM25_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

315-356

PROTEIN 25 PRECURSOR

PVNFA_AZOVI
NITROGEN FIXATION

AZOTOBACTER VINELANDII

158-188
218-245

PROTEIN VNFA

PVNFK_AZOCH
NITROGENASE VANADIUM-

AZOTOBACTER CHROOCOCCUM

68-95

IRON PROTEIN
MCD 1

PVNFK_AZOVI
NITROGENASE VANADIUM-

AZOTOBACTER VINELANDII

68-95
372-403

IRON PROTEIN

PVRP2_SALCH
65 KD VIRULENCE PROTEIN

SALMONELLA CHOLERAE-SUIS
509-536

PVRP2_SALDU
65 KD VIRULENCE PROTEIN

SALMONELLA DUBLIN

511-538

PVSDE_SALDU
VIRULENCE PROTEIN VSDE

SALMONELLA DUBLIN

3-36

PVVHB_VIBVU
CYTOLYSIN SECRETION

VIBRIO VULNIFICUS

30-75

PROTEIN

PWAPA_STRMU
WALL-ASSOCIATED PROTEIN

STREPTOCOCCUS MUTANS

4-41
313-386

PRECURSOR

PWRBA_ECOLI
TRP REPRESSOR BINDING

ESCHERICHIA COLI

89-116

PROTEIN

PX191_ECOLI
X POLYPEPTIDE

ESCHERICHIA COLI

104-131

PX192_ECOLI
X POLYPEPTIDE

ESCHERICHIA COLI

104-131

PX193_ECOLI
X POLYPEPTIDE

ESCHERICHIA COLI

104-131

PXISA_ANASP
EXCISASE A

ANABAENA SP
4-31
89-116
135-162

PXPRB_ECOLI
POSSIBLE INTEGRASE/

ESCHERICHIA COLI

268-295

RECOMBINASE XPRB

PXYLA_STAXY
XYLOSE ISOMERASE

STAPHYLOCOCCUS XYLOSUS

411-438

PXYLK_KLEAE
XYLULOSE KINASE

KLEBSIELLA AEROGENES

2-29

PXYLK_LACPE
XYLULOSE KINASE

LACTOBACILLUS PENTOSUS

52-79
211-238
260-287

PXYLK_STAXY
XYLULOSE KINASE

STAPHYLOCOCCUS XYLOSUS

4-31
96-130
209-236
246-273

PXYLR_BACSU
XYLOSE REPRESSOR

BACILLUS SUBTILIS

75-102
260-287

PXYLR_LACPE
XYLOSE REPRESSOR

LACTOBACILLUS PENTOSUS

262-289

PXYLR_STAXY
XYLOSE REPRESSOR

STAPHYLOCOCCUS XYLOSUS

20-64
101-158
181-215
221-255
274-301

PXYLZ_PSEPU
ELECTRON TRANSFER

PSEUDOMONAS PUTIDA

51-78
104-131

COMPONENT

PXYN4_CALSA
PUTATIVE ENDO-1,4-

CALDOCELLUM

198-225

BETA-XYLANASE

SACCHAROLYTICUM

PXYNA_BACCI
O-1,4-BETA-XYLANASE

BACILLUS CIRCULANS

47-74

PRECURSOR

PXYNA_BACSS
ENDO-1,4-BETA-XYLANASE

BACILLUS SP
173-200

PRECURSOR

PXYNA_BACSU
ENDO-1,4-BETA-XYLANASE

BACILLUS SUBTILIS

47-74

PRECURSOR

PXYNA_CALSA
ENDO-1,4-BETA-XYLANASE A

CALDOCELLUM

132-159
226-256

PRECURSOR

SACCHAROLYTICUM

PXYNA_PSEFL
ENDO-1,4-BETA-XYLANASE

PSEUDOMONAS FLUORESCENS

33-82

PRECURSOR

PXYNB_BACPU
BETA-XYLOSIDASE

BACILLUS PUMILUS

459-486

PXYNB_CALSA
BETA-XYLOSIDASE

CALDOCELLUM

440-474

SACCHAROLYTICUM

PXYNB_PSEFL
ENDO-1,4-BETA-XYLANASE

PSEUDOMONAS FLUORESCENS

51-78
251-278
317-344
475-502

PRECURSOR

PXYNC_PSEFL
ALPHA-L-ARABINOFURAN-

PSEUDOMONAS FLUORESCENS

51-78
251-278

OSIDASE C PRECURSOR

PXYNC_STRLI
ENDO-1,4-BETA-XYLANASE

STREPTOMYCES LIVIDANS

183-210

C PRECURSOR

PY14K_HALMO
HYPOTHETICAL 14.9 KD

HALOCOCCUS MORRHUAE

56-83

PROTEIN

PY23K_STROR
HYPOTHETICAL 23.1 KD

STREPTOCOCCUS ORALIS

78-105

PROTEIN

PY36K_METSM
HYPOTHETICAL 36.7 KD

METHANOBREVIBACTER SMITHII

128-162
172-218

PROTEIN

PYAAC_ECOLI
HYPOTHETICAL 34.6 KD

ESCHERICHIA COLI

271-298

PROTEIN

PYAAC_PSEFL
HYPOTHETICAL 33.9 KD

PSEUDOMONAS FLUORESCENS

274-301

PROTEIN

PYAAM_ECOLI
HYPOTHETICAL 59.1 KD

ESCHERICHIA COLI

45-72

PROTEIN

PYAAP_ECOLI
HYPOTHETICAL 56.6 KD

ESCHERICHIA COLI

352-379

PROTEIN

PYAAQ_ECOLI
HYPOTHETICAL 28.5 KD

ESCHERICHIA COLI

155-182

PROTEIN

PYABC_ECOLI
HYPOTHETICAL 34.9 KD

ESCHERICHIA COLI

131-158

PROTEIN

PYABG_ECOLI
HYPOTHETICAL 89.7 KD

ESCHERICHIA COLI

446-480
627-654

PROTEIN

PYABN_ECOLI
HYPOTHETICAL 63.9 KD

ESCHERICHIA COLI

428-455

PROTEIN

PYAC3_PSEAE
HYPOTHETICAL 23.9 KD

PSEUDOMONAS AERUGINOSA

48-75
150-177

PROTEIN

PYAD2_CLOAB
HYPOTHETICAL 21.6 KD

CLOSTRIDIUM ACETOBUTYLICUM

75-109
114-144

PROTEIN

PYAD3_CLOAB
HYPOTHETICAL 36.9 KD

CLOSTRIDIUM ACETOBUTYLICUM

132-159
165-196
210-237

PROTEIN

PYAD6_CLOAB
HYPOTHETICAL PROTEIN

CLOSTRIDIUM ACETOBUTYLICUM

21-55

PYADA_YEREN
INVASIN PRECURSOR

YERSINIA ENTEROCOLITICA

196-230
247-274
318-381

PYADA_YERPS
INVASIN PRECURSOR

YERSINIA PSEUDOTUBERCULOSIS

255-282
297-360

PYADC_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

13-40
101-131

PYAEA_RICRI
17 KD PROTEIN

RICKETTSIA RICKETTSII

107-134

PYAFB_ECOLI
HYPOTHETICAL 29.4 KD

ESCHERICHIA COLI

221-248

PROTEIN

PYAFD_ECOLI
HYPOTHETICAL 29.1 KD

ESCHERICHIA COLI

34-71

PROTEIN

PYAFE_ECOLI
HYPOTHETICAL 23.0 KD

ESCHERICHIA COLI

123-150

PROTEIN

PYA1B_ESCFE
HYPOTHETICAL PROTEIN

ESCHERICHIA FERGUSONII

2-35

PYAM1_SALTY
PUTATIVE AMIDASE

SALMONELLA TYPHIMURIUM

73-100

PYAT1_SYNY3
HYPOTHETICAL 13.0 KD

SYNECHOCYSTIS SP
26-60

PROTEIN

PYATP_MYCLE
HYPO PROTEIN PUTATIVE

MYCOBACTERIUM LEPRAE

23-57
91-158
511-538

ATP OPERON

PYATR_BACFI
HYPOL ATP-BINDING

BACILLUS FIRMUS

211-238

TRANSPORT PROTEIN

PYATS_MYCGA
HYPOTHETICAL PROTEIN

MYCOPLASMA GALLISEPTICUM

7-41

PYATU_MYCGA
HYPOTHETICAL PROTEIN

MYCOPLASMA GALLISEPTICUM

29-56
60-87

PYAV5_XANCV
HYPOTHETICAL 50 KD

XANTHOMONAS CAMPESTRIS

68-98
199-226

AVIRULENCE PROTEIN

PYBAH_ECOLI
HYPOTHETICAL 24.8 KD

ESCHERICHIA COLI

49-79

PROTEIN

PYBBA_ECOLI
HYPOTHETICAL ABC

ESCHERICHIA COLI

6-69

TRANSPORTER

PYBED_ECOLI
HYPOTHETICAL 9.8 KD

ESCHERICHIA COLI

51-82

PROTEIN

PYBID_ECOLI
HYPOTHETICAL 14.1 KD

ESCHERICHIA COLI

97-124

PROTEIN

PYCAE_ECOLI
HYPOTHETICAL 24.5 KD

ESCHERICHIA COLI

34-61

PROTEIN

PYCBA_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

38-65

PYCBL_BACUN
HYPOTHETICAL 17.3 KD

BACTEROIDES UNIFORMIS

66-100

PROTEIN

PYCEA_BACLA
HYPOTHETICAL PROTEIN

BACILLUS LAUTUS

111-138

PYCFC_ECOLI
HYPOTHETICAL 22.9 KD

ESCHERICHIA COLI

52-79

PROTEIN

PYCHR_ALCEU
HYPOTHETICAL PROTEIN

ALCALIGENES EUTROPHUS

21-48

PYCIB_ECOLI
HYPOTHETICAL 20.8 KD

ESCHERICHIA COLI

16-43

PROTEIN

PYCIF_ECOLI
18.6 KD PROTEIN

ESCHERICHIA COLI

7-68
134-166

PYCIK_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

35-62

PYCL1_ECOLI
HYPOTHETICAL 43.3 KD

ESCHERICHIA COLI

54-81

PROTEIN

PYCP3_SYNPY
HYPOTHETICAL 29.3 KD

SYNECHOCOCCUS SP
194-221

PROTEIN

PYCP3_SYNY3
HYPOTHETICAL 28.0 KD

SYNECHOCYSTIS SP
7-34
120-154

PROTEIN

PYCP5_SYNY3
HYPOTETHICAL 39.5 KD

SYNECHOCYSTIS SP
277-308

PROTEIN

PYCPG_MASLA
HYPOTHETICAL PROTEIN

MASTIGOCLADUS LAMINOSUS

2-29

PYCPY_PSEA9
HYPO PHYCOCYANIN

PSEUDANABAENA SP
380-407

OPERON PROTEIN Y

PYCR2_BACTK
HYPOTHETICAL 29.1 KD

BACILLUS THURINGIENSIS

42-84
153-180

PROTEIN

PYCS5_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

32-59

PRECURSOR

PYCW5_BACSU
HYPOTHETICAL PROTEIN

BACILLUS SUBTILIS

3-30
59-86

PYD3M_HERAU
HYPOTHETICAL 68.4 KD

HERPETOSIPHON AURANTIACUS

12-39
151-178
360-416

PROTEIN

PYDBA_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

32-66
117-144
163-216
233-267
295-329
458-485
676-717
1136-1163
1499-1530

PYDBD_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

80-107

PYDDB_ECOLI
HYPOTHETICAL 86.7 KD

ESCHERICHIA COLI

606-641
683-714
726-753

PROTEIN

PYDDC_ECOLI
HYPOTHETICAL 80.8 KD

ESCHERICHIA COLI

373-400
421-452
621-648

PROTEIN

PYDDD_ECOLI
HYPOTHETICAL 24.1 KD

ESCHERICHIA COLI

133-174

PROTEIN

PYDEH_ECOLI
HYPOTHETICAL 20.5 KD

ESCHERICHIA COLI

96-130

PROTEIN

PYDEJ_ECOLI
HYPOTHETICAL 18.3 KD

ESCHERICHIA COLI

4-38

PROTEIN

PYDEK_ECOLI
HYPOTHETICAL 65.5 KD

ESCHERICHIA COLI

333-360
524-551
565-592

PROTEIN

PYDNN_BORBU
HYPOTHETICAL 11.2 KD

BORRELIA BURGDORFERI

6-36

PROTEIN

PYDO1_SULSO
HYPOTHETICAL 14.7 KD

SULFOLOBUS SOLFATARICUS

17-58
71-103

PROTEIN

PYDO3_SULSO
HYPOTHETICAL 16.9 KD

SULFOLOBUS SOLFATARICUS

11-38

PROTEIN

PYEBA_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

93-120

PYEBG_ECOLI
HYPOTHETICAL 10.7 KD

ESCHERICHIA COLI

50-77

PROTEIN

PYEEE_ECOLI
HYPOTHETICAL 38.1 KD

ESCHERICHIA COLI

43-70

PROTEIN

PYEEF_ECOLI
HYPO 49.8 KD TRANSPORT

ESCHERICHIA COLI

147-174

PROTEIN

PYEGA_ECOLI
HYPOTHETICAL IN DCD

ESCHERICHIA COLI

145-172

3′ REGION

PYEHA_ECOLI
HYPOTHETICAL 36.9 KD

ESCHERICHIA COLI

69-106
283-310

PROTEIN

PYEHB_ECOLI
HYPOTHETICAL 92.3 KD

ESCHERICHIA COLI

151-178
501-545

PROTEIN

PYEHD_ECOLI
HYPOTHETICAL 19.1 KD

ESCHERICHIA COLI

96-123

PROTEIN

PYEHF_ECOLI
HYPOTHETICAL 141.0 KD

ESCHERICHIA COLI

543-570

PROTEIN

PYEHI_ECOLI
HYPOTHETICAL 138.1 KD

ESCHERICHIA COLI

35-70
102-129

PROTEIN

PYEHU_ECOLI
HYPOTHETICAL 62.1 KD

ESCHERICHIA COLI

326-353

PROTEIN

PYEIC_ECOLI
HYPOTHETICAL 33.6 KD

ESCHERICHIA COLI

46-80

PROTEIN

PYEIF_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

61-88

PYEIJ_ECOLI
HYPOTHETICAL 43.4 KD

ESCHERICHIA COLI

15-42

PROTEIN

PYEJA_ECOLI
HYPOTHETICAL ABC

ESCHERICHIA COLI

83-110

TRANSPORTER

PYEJF_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

453-480

PYEJO_ECOLI
HYPOTHETICAL 91.2 KD

ESCHERICHIA COLI

399-433

PROTEIN

PYFHD_ECOLI
HYPOTHETICAL 40.6 KD

ESCHERICHIA COLI

175-202

PROTEIN

PYFU2_BACST
HYPOTHETICAL 30.6 KD

BACILLUS STEAROTHERMOPHILUS

133-160

PROTEIN

PYFXK_BRAJA
HYPOTHETICAL PROTEIN

BRADYRHIZOBIUM JAPONICUM

109-150

PYGAP_BACME
HYPOTHETICAL 37.7 KD

BACILLUS MEGATERIUM

40-67

PROTEIN

PYGFD_ECOLI
HYPOTHETICAL 29.4 KD

ESCHERICHIA COLI

214-241

PROTEIN

PYGGB_ECOLI
HYPOTHETICAL 30.9 KD

ESCHERICHIA COLI

225-252

PROTEIN

PYGGG_ECOLI
HYPOTHETICAL 31.8 KD

ESCHERICHIA COLI

209-236

PROTEIN

PYG12_BACTU
HYPOTHETICAL 22.8 KD

BACILLUS THURINGIENSIS

26-61

PROTEIN

PYG12_PSEPU
HYPOTHETICAL 32.4 KD

PSEUDOMONAS PUTIDA

145-172

PROTEIN

PYGiF_ECOLI
HYPOTHETICAL 48.4 KD

ESCHERICHIA COLI

223-264

PROTEIN

PYGL4_BACST
HYPOTHETICAL 35.5 KD

BACILLUS STEAROTHERMOPHILUS

6-33

PROTEIN

PYGL5_BACST
HYPOTHETICAL PROTEIN

BACILLUS STEAROTHERMOPHILUS

182-209

PYGLN_BACCE
HYPOTHETICAL 15 KD

BACILLUS CEREUS

79-124

PROTEIN

PYGRD_BACSU
HYPOTHETICAL PROTEIN

BACILLUS SUBTILIS

20-47

PYGRE_BACSU
HYPOTHETICAL 17.1 KD

BACILLUS SUBTILIS

84-111

PROTEIN

PYGRP_BACSU
HYPOTHETICAL 39.0 KD

BACILLUS SUBTILIS

98-125

PROTEIN

PYGRP_CLOAB
HYPOTHETICAL 38.8 KD

CLOSTRIDIUM ACETOBUTYLICUM

160-210

PROTEIN

PYGT2_STRMU
HYPOTHETICAL PROTEIN 2

STREPTOCOCCUS MUTANS

4-40
110-138
235-262

PYHAB_ECOLI
HYPOTHETICAL 20.6 KD

ESCHERICHIA COLI

20-66

PROTEIN

PYHAC_ECOLI
HYPOTHETICAL 45.2 KD

ESCHERICHIA COLI

69-96

PROTEIN

PYHAF_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

44-71
138-165

PYHBG_ECOLI
PROBABLE ABC

ESCHERICHIA COLI

176-203

TRANSPORTER

PYHBG_PSEPU
PROBABLE ABC

PSEUDOMONAS PUTIDA

74-101
106-133
147-174

TRANSPORTER

PYHBG_THIFE
PROBABLE ABC

THIOBACILLUS FERROOXIDANS

113-140

TRANSPORTER

PYHDF_ECOLI
HYPOTHETICAL 55.4 KD

ESCHERICHIA COLI

267-297

PROTEIN

PYHEM_BACSU
HYPOTHETICAL 32.0 KD

BACILLUS SUBTILIS

222-253

PROTEIN

PYHET_ANASP
HYPOTHETICAL PROTEIN

ANABAENA SP
72-99

PYHHA_ECOLI
HYPOTHETICAL 16.6 KD

ESCHERICHIA COLI

56-84

PROTEIN

PYHHG_ECOLI
HYPOTHETICAL 15.1 KD

ESCHERICHIA COLI

43-77

PROTEIN

PYHHH_ECOLI
HYPOTHETICAL 14.5 KD

ESCHERICHIA COLI

43-73

PROTEIN

PYHI1_LACLA
HYPOTHETICAL PROTEIN

LACTOCOCCUS LACTIS

167-194

PYHI3_LACLA
HYPOTHETICAL 38.0 KD

LACTOCOCCUS LACTIS

90-124
132-159

PROTEIN

PYHI6_LACLA
HYPOTHETICAL 30.7 KD

LACTOCOCCUS LACTIS

92-148

PROTEIN

PYHI8_LACLA
HYPOTHETICAL 30.7 KD

LACTOCOCCUS LACTIS

77-104
156-183

PROTEIN

PYHLB_STAAU
HYPOTHETICAL PROTEIN

STAPHYLOCOCCUS AUREUS

18-67

PYHLB_VIBCH
HYPOTHETICAL 18.3 KD

VIBRIO CHOLERAE

99-126

PROTEIN

PYHMF_METFE
HYPOTHETICAL 32.2 KD

METHANOTHERMUS FERVIDUS

106-133

PROTEIN

PYHS1_CLOAB
HYPOTHETICAL 11.0 KD

CLOSTRIDIUM ACETOBUTYLICUM

41-85

PROTEIN

PYHSA_CLOAB
HYPOTHETICAL 20.6 KD

CLOSTRIDIUM ACETOBUTYLICUM

98-125

PROTEIN

PYHSC_CLOAB
HYPOTHETICAL 42.4 KD

CLOSTRIDIUM ACETOBUTYLICUM

25-52
208-253
276-310

PROTEIN

PYHV1_LACHE
HYPOTHETICAL PROTEIN

LACTOBACILLUS HELVETICUS

93-120
127-154

PYHYA_PSESN
HYPOTHETICAL PROTEIN

PSEUDOMONAS SP
217-266

PYI11_HALHA
HYPOTHETICAL 38.0 KD

HALOBACTERIUM HALOBIUM

245-272

PROTEIN

PYI32_MYCTU
IS986 HYPOTHETICAL 6.6 KD

MYCOBACTERIUM TUBERCULOSIS

19-46

PROTEIN

PYI42_PSEAY
HYPOTHETICAL 42.6 KD

PSEUDOMONAS AMYLODERAMOSA

9-36

PROTEIN

PYI48_METSM
ISM1 HYPOTHETICAL 48.3 KD

METHANOBREVIBACTER SMITHII

73-100
154-184
338-365

PROTEIN

PYI52_HALHA
HYPOTHETICAL 31 KD

HALOBACTERIUM HALOBIUM

86-113

PROTEIN

PYIBB_ECOLI
HYPOTHETICAL 34.0 KD

ESCHERICHIA COLI

202-239

PROTEIN

PYIBD_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

9-43

PYIBF_ECOLI
HYPOTHETICAL 22.6 KD

ESCHERICHIA COLI

131-158

PROTEIN

PYIBG_ECOLI
HYPOTHETICAL 18.1 KD

ESCHERICHIA COLI

70-97

PROTEIN

PYICC_ECOLI
HYPOTHETICAL 33.2 KD

ESCHERICHIA COLI

143-170

PROTEIN

PYICD_ECOLI
HYPOTHETICAL 31.1 KD

ESCHERICHIA COLI

132-159

PROTEIN

PYICH_ECOLI
HYPOTHETICAL 62.3 KD

ESCHERICHIA COLI

408-435

PROTEIN

PYICI_ECOLI
HYPOTHETICAL 88.1 KD

ESCHERICHIA COLI

122-149

PROTEIN

PYICN_ECOLI
HYPOTHETICAL 18.2 KD

ESCHERICHIA COLI

76-103

PROTEIN

PYICO_ECOLI
HYPOTHETICAL 49.9 KD

ESCHERICHIA COLI

320-347

PROTEIN

PYIDB_ECOLI
HYPOTHETICAL 13.8 KD

ESCHERICHIA COLI

34-78

PROTEIN

PYIDE_ECOLI
HYPOTHETICAL 58.9 KD

ESCHERICHIA COLI

86-113
182-209
277-304

PROTEIN

PYIDI_ECOLI
HYPOTHETICAL 15.7 KD

ESCHERICHIA COLI

56-83

PROTEIN

PYIDK_ECOLI
HYPOTHETICAL 62.1 KD

ESCHERICHIA COLI

2-39

PROTEIN

PYIDP_ECOLI
HYPOTHETICAL 27.3 KD

ESCHERICHIA COLI

63-97

PROTEIN

PYIEA_ECOLI
HYPOTHETICAL 49.2 KD

ESCHERICHIA COLI

221-248

PROTEIN

PYIEC_ECOLI
HYPOTHETICAL 60.6 KD

ESCHERICHIA COLI

20-58
270-297

PROTEIN

PYIEC_ERWCH
HYPOTHETICAL PROTEIN

ERWINIA CHRYSANTHEMI

22-67

PYIED_ECOLI
HYPOTHETICAL 34.8 KD

ESCHERICHIA COLI

86-120

PROTEIN

PYIEG_ECOLI
HYPOTHETICAL 46.9 KD

ESCHERICHIA COLI

293-327

PROTEIN

PYIEH_ECOLI
HYPOTHETICAL 24.7 KD

ESCHERICHIA COLI

51-78

PROTEIN

PYIEM_ECOLI
HYPOTHETICAL 15.0 KD

ESCHERICHIA COLI

73-105

PROTEIN

PYIEO_ECOLI
HYPOTHETICAL 51.5 KD

ESCHERICHIA COLI

201-242
380-407

PROTEIN

PYIFC_ECOLI
HYPOTHETICAL 39.6 KD

ESCHERICHIA COLI

175-202

PROTEIN

PYIGJ_ECOLI
HYPOTHETICAL 14.0 KD

ESCHERICHIA COLI

51-92

PROTEIN

PYIGM_ECOLI
HYPOTHETICAL 33.7 KD

ESCHERICHIA COLI

120-154

PROTEIN

PYIGN_ECOLI
HYPOTHETICAL 54.7 KD

ESCHERICHIA COLI

207-234

PROTEIN

PYIGO_ECOLI
HYPOTHETICAL 28.1 KD

ESCHERICHIA COLI

67-94

PROTEIN

PYIGP_ECOLI
HYPOTHETICAL 22.3 KD

ESCHERICHIA COLI

173-200

PROTEIN

PYIGT_ECOLI
HYPOTHETICAL 27.8 KD

ESCHERICHIA COLI

132-159

PROTEIN

PYIHB_ECOLI
HYPOTHETICAL 21.2 KD

ESCHERICHIA COLI

13-40

PROTEIN

PYIHD_ECOLI
HYPOTHETICAL 10.3 KD

ESCHERICHIA COLI

28-55

PROTEIN

PYIHF_ECOLI
HYPOTHETICAL 54.1 KD

ESCHERICHIA COLI

272-306

PROTEIN

PYIHI_ECOLI
HYPOTHETICAL 19.1 KD

ESCHERICHIA COLI

112-139

PROTEIN

PYIHK_ECOLI
HYPOTHETICAL 65.4 KD

ESCHERICHIA COLI

4-31

PROTEIN

PYIHM_ECOLI
HYPOTHETICAL 36.9 KD

ESCHERICHIA COLI

83-110
120-154
297-324

PROTEIN

PYIHO_ECOLI
HYPOTHETICAL 81.8 KD

ESCHERICHIA COLI

612-646

PROTEIN

PYIHP_ECOLI
HYPOTHETICAL 53.1 KD

ESCHERICHIA COLI

357-384

PROTEIN

PYIHV_ECOLI
HYPOTHETICAL 31.9 KD

ESCHERICHIA COLI

72-99

PROTEIN

PYIHX_ECOLI
HYPOTHETICAL 23.5 KD

ESCHERICHIA COLI

9-36

PROTEIN

PYIHZ_ECOLI
HYPOTHETICAL 15.9 KD

ESCHERICHIA COLI

6-33

PROTEIN

PYIIP_ECOLI
HYPOTHETICAL 32.9 KD

ESCHERICHIA COLI

22-63

PROTEIN

PYIIU_ECOLI
HYPOTHETICAL 9.6 KD

ESCHERICHIA COLI

28-71

PROTEIN

PYIJC_ECOLI
HYPOTHETICAL 26.6 KD

ESCHERICHIA COLI

136-163

PROTEIN

PYIJH_ECOLI
HYPOTHETICAL 78.3 KD

ESCHERICHIA COLI

225-263

PROTEIN

PYIJK_ECOLI
HYPOTHETICAL 11.2 KD

ESCHERICHIA COLI

26-53

PROTEIN

PYIJO_ECOLI
HYPOTHETICAL 32.1 KD

ESCHERICHIA COLI

214-241

PROTEIN

PYIJP_ECOLI
HYPOTHETICAL 66.6 KD

ESCHERICHIA COLI

110-137
419-446

PROTEIN

PYINL_LISMO
HYPOTHETICAL 26.8 KD

LISTERIA MONOCYTOGENES

7-34

PROTEIN

PYIS1_SHISO
INSERTION ELEMENT IS600

SHIGELLA SONNEI

62-89

PYIS1_STRCO
IS110 HYPOTHETICAL 43.6 KD

STREPTOMYCES COELICOLOR

125-152

PROTEIN

PYIS3_SHISO
INSERTION LEMENT IS629

SHIGELLA SONNEI

66-100

PYISP_BACSP
HYPOTHETICAL 41.2 KD

BACILLUS SP
312-339

PROTEIN

PYJAG_ECOLI
HYPOTHETICAL 22.6 KD

ESCHERICHIA COLI

51-78

PROTEIN

PYJAI_ECOLI
HYPOTHETICAL 20.4 KD

ESCHERICHIA COLI

88-122

PROTEIN

PYJBH_ECOLI
HYPOTHETICAL 78.5 KD

ESCHERICHIA COLI

93-120

PROTEIN

PYJBL_ECOLI
HYPOTHETICAL 9.7 KD

ESCHERICHIA COLI

30-57

PROTEIN

PYJBM_ECOLI
HYPOTHETICAL 26.7 KD

ESCHERICHIA COLI

112-149

PROTEIN

PYJBQ_ECOLI
HYPOTHETICAL 15.7 KD

ESCHERICHIA COLI

2-29

PROTEIN

PYJCC_ECOLI
HYPOTHETICAL 60.8 KD

ESCHERICHIA COLI

38-65
414-441
451-492

PROTEIN

PYJCE_ECOLI
HYPOTHETICAL 60.5 KD

ESCHERICHIA COLI

454-481

PROTEIN

PYJCG_ECOLI
HYPOTHETICAL 59.2 KD

ESCHERICHIA COLI

394-421

PROTEIN

PYJCO_ECOLI
HYPOTHETICAL 25.1 KD

ESCHERICHIA COLI

91-118

PROTEIN

PYJCP_ECOLI
HYPOTHETICAL 53.4 KD

ESCHERICHIA COLI

242-269

PROTEIN

PYJCS_ECOLI
HYPOTHETICAL 73.7 KD

ESCHERICHIA COLI

366-396

PROTEIN

PYJCW_ECOLI
HYPOTHETICAL ABC

ESCHERICHIA COLI

50-84

TRANSPORTER

PYJDA_ECOLI
HYPOTHETICAL 84.2 KD

ESCHERICHIA COLI

2-29
451-485

PROTEIN

PYJDB_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

103-134

PRECURSOR

PYJJA_ECOLI
HYPOTHETICAL 17.5 KD

ESCHERICHIA COLI

35-69
88-129

PROTEIN

PYKAB_BACFI
HYPOTHETICAL 48.8 KD

BACILLUS FIRMUS

321-355

PROTEIN

PYLA1_LACAC
HYPOTHETICAL PROTEIN

LACTOBACILLUS ACIDOPHILUS

47-74

PYLA2_LACAC
HYPOTHETICAL 14.5 KD

LACTOBACILLUS ACIDOPHILUS

15-42

PROTEIN

PYLA3_LACAC
HYPOTHETICAL 14.4 KD

LACTOBACILLUS ACIDOPHILUS

47-74

PROTEIN

PYLAC_SULSO
HYPOTHETICAL 24.4 KD

SULFOLOBUS SOLFATARICUS

23-50

PROTEIN

PYLP3_PSEPU
HYPOTHETICAL 44.7 KD

PSEUDOMONAS PUTIDA

186-213
314-341

PROTEIN

PYLPA_YEREN
YLPA LIPOPROTEIN

YERSINIA ENTEROCOLITICA

184-221

PRECURSOR

PYLT3_ANAVA
HYPOTHETICAL 22.6 KD

ANABAENA VARIABILIS

172-199

PROTEIN

PYLUD_LACLA
HYPOTHETICAL 29.7 KD

LACTOCOCCUS LACTIS

35-70

PROTEIN

PYME2_BACSU
HYOPTHETICAL 35.3 KD

BACILLUS SUBTILIS

52-79

PROTEIN

PYMG2_MYCGE
HYPOTHETICAL 114.4 KD

MYCOPLASMA GENITALIUM

56-83
159-193
420-445
981-1008

PROTEIN PRECURSOR

PYNGA_CLOPE
HYPOTHETICAL PROTEIN

CLOSTRIDIUM PERFRINGENS

139-166

PYNGB_CLOPE
HYPOTHETICAL 31.2 KD

CLOSTRIDIUM PERFRINGENS

12-49
63-97
182-211

PROTEIN

PYNI1_METTL
HYPOTHETICAL PROTEIN

METHANOCOCCUS

55-89

THERMOLITHOTROPHICUS

PYNQ1_PARDE
HYPOTHETICAL 9.3 KD

PARACOCCUS DENITRIFICANS

52-86

PROTEIN

PYNT3_ANASP
HYPOTHETICAL 28.1 KD

ANABAENA SP
171-198

PROTEIN

PYNT5_ANASP
HYPOTHETICAL PROTEIN

ANABAENA SP
87-165

PYOHD_ECOLI
HYPOTHETICAL 21.4 KD

ESCHERICHIA COLI

5-32

PROTEIN

PYOHG_ECOLI
HYPOTHETICAL 43.3 KD

ESCHERICHIA COLI

104-171
289-316

PROTEIN

PYOJA_ECOLI
HYPOTHETICAL 15.0 KD

ESCHERICHIA COLI

17-44

PROTEIN

PYOJE_ECOLI
HYPOTHETICAL 93.5 KD

ESCHERICHIA COLI

221-248

PROTEIN

PYOJF_ECOLI
HYPOTHETICAL 9.5 KD

ESCHERICHIA COLI

41-82

PROTEIN

PYOJH_ECOLI
HYPOTHETICAL 54.3 KD

ESCHERICHIA COLI

145-193

PROTEIN

PYOJJ_ECOLI
HYPOTHETICAL 36.2 KD

ESCHERICHIA COLI

94-121

PROTEIN

PYOMA2_PHOS9
HYPOTHETICAL PROTEIN IN

PHOTOBACTERIUM SP
32-59

OMPH 3′ REGION

PYOPH_YEREN
PROTEIN-TYROSINE

YERSINIA ENTEROCOLITICA

63-105

PHOSPHATASE YOPH

PYOPH_YERPS
PROTEIN-TYROSINE

YERSINIA PSEUDOTUBERCULOSIS

63-105

PHOSPHATASE YOPH

PYOPN_YEREN
OUTER MEMBRANE PROTEIN

YERSINIA ENTEROCOLITICA

23-50
66-93
235-262

YOPN

PYOPN_YERPS
OUTER MEMBRANE PROTEIN

YERSINIA PSEUDOTUBERCULOSIS

23-50
66-93
235-262

YOPN

PYOPQ_YEREN
YOPQ PROTEIN PRECURSOR

YERSINIA ENTEROCOLITICA

61-88

PYORA_HAEIN
HYPOTHETICAL 31.5 KD

HAEMOPHILUS INFLUENZAE

147-174

PROTEIN

PYORA_LISMO
HYPOTHETICAL 25.6 KD

LISTERIA MONOCYTOGENES

32-77

PROTEIN

PYORA_PYRWO
HYPOTHETICAL 24.7 KD

PYROCOCCUS WOESEI

183-210

PROTEIN

PYORB_HAEIN
HYPOTHETICAL 19.8 KD

HAEMOPHILUS INFLUENZAE

39-66

PROTEIN

PYORC_HAEIN
HYPOTHETICAL 19.9 KD

HAEMOPHILUS INFLUENZAE

49-79

PROTEIN

PYORE_HAEIN
8 KD PROTEIN

HAEMOPHILUS INFLUENZAE

47-74
82-109

PYORF_HAEIN
26.8 KD PROTEIN

HAEMOPHILUS INFLUENZAE

199-229

PYORH_HAEIN
HYPOTHETICAL 13.7 KD

HAEMOPHILUS INFLUENZAE

7-34

PROTEIN

PYORI_HAEIN
95.4 KD PROTEIN

HAEMOPHILUS INFLUENZAE

416-450
688-722

PYORQ_BACSU
HYPOTHETICAL 34 KD

BACILLUS SUBTILIS

148-175

PROTEIN

PYORX_PYRWO
HYPOTHETICAL PROTEIN

PYROCOCCUS WOESEI

66-93

PYORZ_LISMO
HYPOTHETICAL 16.9 KD

LISTERIA MONOCYTOGENES

27-54

PROTEIN

PYP15_STAAU
HYPOTHETICAL 15.5 KD

STAPHYLOCOCCUS AUREUS

71-98
110-137

PROTEIN

PYP23_BACSU
HYPOTHETICAL 22.5 KD

BACILLUS SUBTILIS

57-84

PROTEIN

PYP23_STAAU
HYPOTHETICAL 22.2 KD

STAPHYLOCOCCUS AUREUS

29-70

PROTEIN

PYP2A_STAAU
HYPOTHETICAL 26.9 KD

STAPHYLOCOCCUS AUREUS

34-104

PROTEIN

PYP2B_STAAU
HYPOTHETICAL 27.0 KD

STAPHYLOCOCCUS AUREUS

23-60
62-89
179-206

PROTEIN

PYP2C_STAAU
HYPOTHETICAL 27.7 KD

STAPHYLOCOCCUS AUREUS

13-83
129-176

PROTEIN

PYP7_AGRT4
HYPOTHETICAL PROTEIN 7

AGROBACTERIUM TUMEFACIENS

29-56

PYPA2_LEGPN
HYPOTHETICAL PROTEIN

LEGIONELLA PNEUMOPHILA

94-135

PYPAS_ENTFA
HYPOTHETICAL 13 KD

ENTEROCOCCUS FAECALIS

79-106

PROTEIN

PYPA_BACAN
HYPOTHETICAL 21.6 KD

BACILLUS ANTHRACIS

13-47
115-162

PROTEIN

PYPC1_ECOLI
HYPOTHETICAL 27.6 KD

ESCHERICHIA COLI

5-32

PROTEIN

PYPDA_BACSU
HYPOTHETICAL 27.3 KD

BACILLUS SUBTILIS

184-222

PROTEIN

PYPFT_ECOLI
HYPOTHETICAL 12.6 KD

ESCHERICHIA COLI

16-43

PROTEIN

PYPH1_SYNP2
HYPOTHETICAL 18.1 KD

SYNECHOCOCCUS SP
34-61

PROTEIN

PYP16_CLOPE
HYPOTHETICAL 19.7 KD

CLOSTRIDIUM PERFRINGENS

7-34
43-77
83-149

PROTEIN

PYP19_CLOPE
HYPOTHETICAL 14.5 KD

CLOSTRIDIUM PERFRINGENS

2-59

PROTEIN

PYPIX_CLOPE
HYPOTHETICAL 38.4 KD

CLOSTRIDIUM PERFRINGENS

110-137
263-290
303-340

PROTEIN

PYPIY_PSEAE
HYPOTHETICAL 38.5 KD

PSEUDOMONAS AERUGINOSA

22-52

PROTEIN

PYPP_BACSU
HYPOTHETICAL PROCESSING

BACILLUS SUBTILIS

329-356

PROTEASE

PYPQQ_KLEPN
HYPOTHETICAL PROTEIN

KLEBSIELLA PNEUMONIAE

243-270

PYPS2_PLEBO
HYPOTHETICAL 13.1 KD

PLECTONEMA BORYANUM

27-54

PROTEIN

PYPV1_METTF
HYPOTHETICAL 40.7 KD

METHANOBACTERIUM

58-85
308-335

PROTEIN

THERMOFORMICICUM

PYPV3_METTF
HYPOTHETICAL 22.5 KD

METHANOBACTERIUM

3-30

PROTEIN

THERMOFORMICICUM

PYPV7_METTF
HYPOTHETICAL 17.3 KD

METHANOBACTERIUM

69-117

PROTEIN

THERMOFORMICICUM

PYPVB_METTF
HYPOTHETICAL 49.6 KD

METHANOBACTERIUM

333-360
389-430

PROTEIN

THERMOFORMICICUM

PYPYB_BACSU
HYPOTHETICAL 72.4 KD

BACILLUS SUBTILIS

602-636

PROTEIN

PYPZ1_METTF
HYPOTHETICAL 40.6 KD

METHANOBACTERIUM

58-85
308-335

PROTEIN

THERMOFORMICICUM

PYPZ2_METTF
HYPOTHETICAL 33.1 KD

METHANOBACTERIUM

38-65
154-188

PROTEIN

THERMOFORMICICUM

PYPZ5_METTF
HYPOTHETICAL 54.1 KD

METHANOBACTERIUM

193-220
226-253
381-408

PROTEIN

THERMOFORMICICUM

PYPZ7_METTF
HYPOTHETICAL 9.7 KD

METHANOBACTERIUM

5-78

PROTEIN

THERMOFORMICICUM

PYR18_THEPE
HYPOTHETICAL 18.7 KD

THERMOFILUM PENDENS

82-109

PROTEIN

PYRB1_HALCU
HYPOTHETICAL 40 KD

HALOBACTERIUM CUTIRUBRUM

20-51

GTP-BINDING PROTEIN

PYREC_SYNP2
HYPOTHETICAL 28.7 KD

SYNECHOCOCCUS SP
49-76

PROTEIN

PYRF0_SALTY
HYPOTHETICAL 40.6 KD

SALMONELLA TYPHIMURIUM

143-190

PROTEIN

PYRF2_SALTY
HYPOTHETICAL 51.0 KD

SALMONELLA TYPHIMURIUM

428-455

PROTEIN

PYRF5_SALTY
HYPOTHETICAL 20.6 KD

SALMONELLA TYPHIMURIUM

29-56

PROTEIN

PYRF6_SALTY
HYPOTHETICAL 36.6 KD

SALMONELLA TYPHIMURIUM

130-157

PROTEIN

PYRG2_LACLA
HYPOTHETICAL PROTEIN

LACTOCOCCUS LACTIS

140-167

PYRL1_METVA
HYPOTHETICAL PROTEIN

METHANOCOCCUS VANNIELII

40-93
129-156

PYRP2_METVA
HYPOTHETICAL 11.6 KD

METHANOCOCCUS VANNIELII

13-40

PROTEIN

PYRP2_SULAC
HYPOTHETICAL 11.5 KD

SULFOLOBUS ACIDOCALDARIUS

5-51

PROTEIN

PYRP3_SULAC
HYPOTHETICAL 14.5 KD

SULFOLOBUS ACIDOCALDARIUS

37-71

PROTEIN

PYRTP_BACSU
HYPOTHETICAL 25.3 KD

BACILLUS SUBTILIS

29-56

PROTEIN

PYRTS_BACSU
HYPOTHETICAL 11.4 KD

BACILLUS SUBTILIS

3-30
44-81

PROTEIN

PYSCB_YEREN
HYPOTHETICAL YSC OPERON

YERSINIA ENTEROCOLITICA

90-121

PROTEIN B

PYSCC_YEREN
YSC OPERON PROTEIN C

YERSINIA ENTEROCOLITICA

38-72
365-399

PRECURSOR

PYSCD_YEREN
YSC OPERON PROTEIN D

YERSINIA ENTEROCOLITICA

242-269

PYSCH_YEREN
YSC OPERON PROTEIN H

YERSINIA ENTEROCOLITICA

28-58

PYSCH_YERPS
YSC OPERON PROTEIN H

YERSINIA PSEUDOTUBERCULOSIS

28-58

PYSCI_YEREN
YSC OPERON PROTEIN I

YERSINIA ENTEROCOLITICA

49-76

PYSCI_YERPS
YSC OPERON PROTEIN I

YERSINIA PSEUDOTUBERCULOSIS

49-76

PYSCJ_YERPS
YSC OPERON LIPOPROTEIN J

YERSINIA ENTEROCOLITICA

99-126

PRECURSOR

PYSCJ_YEREN
YSC OPERON LIPOPROTEIN J

YERSINIA PSEUDOTUBERCULOSIS

99-126

PRECURSOR

PYSCL_YEREN
YSC OPERON PROTEIN L

YERSINIA ENTEROCOLITICA

41-68

PYSCL_YERPS
YSC OPERON PROTEIN L

YERSINIA PSEUDOTUBERCULOSIS

41-68

PYSMA_SERMA
HYPOTHETICAL 9.5 KD

SERRATIA MARCESCENS

11-70

PROTEIN

PYSO2_DESAM
HYPOTHETICAL 28.3 KD

DESULFUROLOBUS AMBIVALENS

68-109

PROTEIN

PYSO3_DESAM
HYPOTHETICAL PROTEIN

DESULFUROLOBUS AMBIVALENS

65-155

PYSP2_LEPIT
HYPOTHETICAL PROTEIN

LEPTOSPIRA INTERROGANS

6-33
60-94

PYSR1_MYCMY
HYPOTHETICAL PROTEIN

MYCOPLASMA MYCOIDES

35-99
185-227
300-327

PYSY3_BACSU
HYPOTHETICAL 19.6 KD

BACILLUS SUBTILIS

72-99

PROTEIN

PYSYN_METFE
HYPOTHETICAL PROTEIN

METHANOTHERMUS FERVIDUS

78-105

PYT37_STRFR
HYPOTHETICAL 37.1 KD

STREPTOMYCES FRADIAE

246-273

PROTEIN

PYTDK_BACSU
HYPOTHETICAL 35.6 KD

BACILLUS SUBTILIS

244-271
279-306

PROTEIN

PYTRE_LEPBI
HYPOTHETICAL 22 KD

LEPTOSPIRA BIFLEXA

84-113

PROTEIN

PYTRP_LACLA
HYPOTHETICAL 13.3 KD

LACTOCOCCUS LACTIS

76-112

PROTEIN

PYTS1_BACSU
HYPOTHETICAL 20 KD

BACILLUS SUBTILIS

37-64

PROTEIN

PYTSF_SPICI
HYPOTHETICAL 23.8 KD

SPIROPLASMA CITRI

102-149

PROTEIN

PYX04_BACSU
HYPOTHETICAL 12.8 KD

BACILLUS SUBTILIS

37-64
68-95

PROTEIN

PYX06_BACSU
HYPOTHETICAL 21.0 KD

BACILLUS SUBTILIS

142-169

PROTEIN

PYX13_BACSU
HYPOTHETICAL 26.0 KD

BACILLUS SUBTILIS

17-51

PROTEIN

PYX15_BACSU
HYPOTHETICAL 61.8 KD

BACILLUS SUBTILIS

165-207
262-289

PROTEIN

PYX18_BACSU
HYPOTHETICAL 66.8 KD

BACILLUS SUBTILIS

3-30
34-61
94-142

PROTEIN

PYX19_BACSU
HYPOTHETICAL 31.3 KD

BACILLUS SUBTILIS

56-83
85-112

PROTEIN

PYX20_BACSU
HYPOTHETICAL 23.2 KD

BACILLUS SUBTILIS

24-58

PROTEIN

PYX12_ANASP
HYPOTHETICAL 18.9 KD

ANABAENA SP
77-104

PROTEIN

PYXYB_CALSA
HYPOTHETICAL 10.7 KD

CALDOCELLUM

9-39

PROTEIN

SACCHAROLYTICUM

PYXYC_CALSA
HYPOTHETICAL PROTEIN

CALDOCELLUM

41-94

SACCHAROLYTICUM

PYZE1_ECOLI
HYPOTHETICAL 16.7 KD

ESCHERICHIA COLI

41-78

PROTEIN

TABLE IX

107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY FOR ALL HUMAN PROTEINS

PCGENE
107 × 178 × 4 Motif Search on All Human Protein Sequences

FILE NAME
PROTEIN
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9

P143F_HUMAN
14-3-3 PROTEIN ETA (PROTEIN AS1) (FRAGMENT).
101-135

P143S_HUMAN
14-3-3 PROTEIN HOMOLOG STRATIFIN.
45-72

P143T_HUMAN
14-3-3 PROTEIN THETA (14-3-3 PROTEIN T-CELL) (HS1 PROTEIN).
61-92

P143Z_HUMAN
14-3-3 PROTEIN ZETA (PROTEIN KINASE C INHIBITOR
28-55

PROTEIN-1) (KCIP-1)

P1A23_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-114

A-29 (AW-19) A*2901 ALPHA CHAIN

P1A24_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

A-29 (AW-19) A*2902 ALPHA CHAIN

P1B02_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

B-7 B*0702 ALPHA CHAIN

P1B05_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114
148-182

B-13 B*1301 ALPHA CHAIN

P1B10_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

BW-75 (B-15) B*1502 ALPHA CHAIN

P1B11_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

BW-72 (BW-70) B*1503 ALPHA

P1B12_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
76-107

B-62 B*1504 ALPHA CHAIN

P1B13_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-18 B*1801 ALPHA CHAIN

P1B21_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-35 B*3501 ALPHA CHAIN

P1B22_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-35 B*3502 ALPHA CHAIN

P1B23_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-35 B*3503 ALPHA CHAIN

P1B24_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
76-107

B-35 B*3504 ALPHA CHAIN

P1B25_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-35 B*3505 ALPHA CHAIN

P1B26_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-35 B*3506 ALPHA CHAIN

P1B27_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-35 B*3507 ALPHA CHAIN

P1B28_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-35 B*3508 ALPHA CHAIN

P1B29_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
88-115

B-37 B*3701 ALPHA CHAIN

P1B32_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

B-39 B*3902 ALPHA CHAIN

P1B33_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
60-91

BW-60 (B-40) B*4001 ALPHA CHAIN

P1B34_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-40 B*4002 ALPHA CHAIN

P1B35_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-40 B*4003 ALPHA CHAIN

P1B36_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-40 B*4004 ALPHA CHAIN

P1B38_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

BW-41 B*4101 ALPHA CHAIN

P1B39_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-42 B*4201 ALPHA CHAIN

P1B40_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-111

BW-44 (B-12) B*4401 ALPHA CHAIN

P1B41_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-44 (B-12) B*4402 ALPHA CHAIN

P1B42_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-44 (B-12) B*4403 ALPHA CHAIN

P1B43_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

BW-45 (B-12) B*4501 ALPHA CHAIN

P1B44_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-46 B*4601 ALPHA CHAIN

P1B45_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
88-115

BW-47 B*4701 ALPHA CHAIN

P1B46_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

B-48 B*4801 ALPHA CHAIN

P1B47_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

B-49 (B-21) B*4901 ALPHA CHAIN

P1B48_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
84-115

BW-50 (B-21) B*5001 ALPHA CHAIN

P1B53_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-52 (B-5) B*5201 ALPHA CHAIN

P1B55_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-54 (BW-22) B*5401 ALPHA

P1B56_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-55 (BW-22) B*5501 ALPHA

P1B57_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-55 (BW-22) B*5502 ALPHA

P1B58_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-56 (BW-22) B*5601 ALPHA

P1B59_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

BW-56 (BW-22) B*5602 ALPHA

P1C01_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

CW-1 CW*0101 ALPHA CHAIN

P1C02_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

CW-1 CW*0102 ALPHA CHAIN

P1C03_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

CW-2 CW*0201 ALPHA CHAIN

P1C04_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

CW-2 CW*0202 ALPHA CHAIN

P1C06_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

CW-3 CW*0302 ALPHA CHAIN

P1C12_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

CW-8 CW*0801 ALPHA CHAIN

P1C13_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

CW-8 CW*0802 ALPHA CHAIN

P1C14_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

CW-8 CW*0803 ALPHA CHAIN

P1C17_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
87-114

CW*1401 ALPHA CHAIN PRECURSOR

P25A6_HUMAN
69/71 KD (2′-5′) OLIGOADENYLATE
593-620

SYNTHETASE

P2AAA_HUMAN
PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT,
12-49
54-81

ALPHA ISOFORM

P2AAB_HUMAN
PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT,
9-36
41-68
79-106

BETA ISOFORM

P2ABA_HUMAN
PROTEIN PHOSPHATASE PP2A, 55 KD REGULATORY SUBUNIT,
177-218

ALPHA ISOFORM

P411_HUMAN
ERYTHROID PROTEIN 4.1 (BAND 4.1, ERTHROCYTE FORM).
32-66

P412_HUMAN
NON-ERYTHROID PROTEIN 4.1 (BAND 4.1, LYMPHOID FORM)
3-30
708-735

P42_HUMAN
ERYTHROCYTE MEMBRANE PROTEIN BAND 4.2
173-200
518-545

P4F2_HUMAN
4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN (4F2HC)
281-322

(LYMPHOCYTE ACTIVATION

P5H1E_HUMAN
5-HYDROXYTRYPTAMINE 1E RECEPTOR (5-HT-1E) (SEROTONIN
311-338

RECEPTOR)

P5H1F_HUMAN
5-HYDROXYTRYPTAMINE 1F RECEPTOR (5-HT-1F) (SEROTONIN
222-253

RECEPTOR)

P5H2A_HUMAN
5-HYDROXYTRYPTAMINE 2A RECEPTOR (5-HT-2A) (SEROTONIN
22-56

RECEPTOR)

P5H7_HUMAN
5-HYDROXYTRYPTAMINE 7 RECEPTOR (5-HT-7) (5-HT-X)
72-99

(SEROTONIN RECEPTOR)

PA1AC_HUMAN
ALPHA-1-ANTICHYMOTRYPSIN PRECURSOR (ACT).
98-132
330-357

PA1AG_HUMAN
ALPHA-1-ACID GLYCOPROTEIN 1 PRECURSOR (OROSOMUCOID)
92-119

(OMD).

PA1AT_HUMAN
ALPHA-1-ANTITRYPSIN PRECURSOR (ALPHA-1 PROTEASE
168-202

INHIBITOR) (ALPHA-1-

PA1AU_HUMAN
ALPHA-1-ANTITRYPSIN-RELATED PROTEIN PRECURSOR.
163-197

PA2AP_HUMAN
ALPHA-2-ANTIPLASMIN PRECURSOR (ALPHA-2-PLASMIN
191-218
365-395

INHIBITOR) (ALPHA-2-

PA2GL_HUMAN
LEUCINE-RICH ALPHA-2-GLYCOPROTEIN (LRG).
104-134

PA2MG_HUMAN
ALPHA-2-MACROGLOBULIN PRECURSOR (ALPHA-2-M).
53-80
319-349
1085-1112
1402-1429

PA4_HUMAN
ALZHEIMER'S DESEASE AMYLOID A4 PROTEIN PRECURSOR
428-455

(PROTEASE NEXIN-11)

PAACT_HUMAN
ALPHA-ACTININ (F-ACTIN CROSS LINKING PROTEIN).
92-119
720-747

PAATM_HUMAN
ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL
109-136

PRECURSOR (EC 2.6.1.1)

PABP2_HUMAN
ENDOTHELIAL ACTIN-BINDING PROTEIN (ABP-280)
61-88
119-147
2604-2633

(NONMUSCLE FILAMIN)

PAC12_HUMAN
ACTIVATOR 1 37 KD SUBUNIT (REPLICATION FACTOR C 37
306-333

KD SUBUNIT) (A1

PAC15_HUMAN
ACTIVATOR 1 140 KD SUBUNIT (REPLICATION FACTOR C
14-51
182-209
668-700

LARGE SUBUNIT) (A1

PACDL_HUMAN
ACYL-COA DEHYDROGENASE PRECURSOR, LONG-CHAIN
78-108
179-206
313-340

SPECIFIC (EC 1.3.99.13)

PACET_HUMAN
ANGIOTENSIN-CONVERTING ENZYME PRECURSOR, TESTIS-
78-115
126-153
676-710

SPECIFIC (EC 3.4.15.1)

PACE_HUMAN
ANGIOTENSIN-CONVERTING ENZYME PRECURSOR, SOMATIC
652-689
700-727
1250-1284

(EC 3.4.15.1) (ACE)

PACHA_HUMAN
ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN
48-80

PRECURSOR.

PACHE_HUMAN
ACETYLCHOLINE RECEPTOR PROTEIN, EPSILON CHAIN
46-98

PRECURSOR.

PACHG_HUMAN
ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN
45-79
304-331

PRECURSOR.

PACHP_HUMAN
NEURONAL ACETYLCHOLINE RECEPTOR PROTEIN, BETA-4
29-56
70-97

CHAIN (FRAGMENT)

PACRO_HUMAN
ACROSIN PRECURSOR (EC 3.4.21.10).
112-149

PACYM_HUMA
ACYLPHOSPHATASE, MUSCLE TYPE ISOZYME (EC 3.6.1.7)
26-53

(ACYLPHOSPHATE

PADT2_HUMAN
ADP,ATP CARRIER PROTEIN, FIBROBLAST ISOFORM
162-189

(ADP/ATP TRANSLOCASE 2)

PADT3_HUMAN
ADP,ATP CARRIER PROTEIN, LIVER ISOFORM T2 (ADP/ATP
163-190

TRANSLOCASE 3)

PAK79_HUMAN
A-KINASE ANCHOR PROTEIN 79 (AKAP 79) (CAMP-DEPENDENT
197-238
381-414

PROTEIN KINASE

PALFA_HUMAN
FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) A
36-63

(MUSCLE).

PALFB_HUMAN
FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) B
79-113

(LIVER).

PAMD1_HUMAN
AMP DEAMINASE 1 (EC 3.5.4.6) (MYOADENYLATE
59-86

DEAMINASE) (AMP DEAMINASE

PAMD3_HUMAN
AMP DEAMINASE 3 (EC 3.5.4.6) (AMP DEAMINASE
49-76

ISOFORM E).

PAMPN_HUMAN
AMINOPEPTIDASE N (EC 3.4.11.2) (MICROSOMAL
492-523
604-648
926-964

AMINOPEPTIDASE) (GP150)

PAMPR_HUMAN
AMPHIREGULIN PRECURSOR (AR).
213-247

PAMRP_HUMAN
ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN
173-236
263-290

PRECURSOR

PANFB_HUMAN
BRAIN NATRIURETIC PEPTIDE PRECURSOR
36-63

PANK1_HUMAN
ANKYRIN R (ANKYRINS 2.1 AND 2.2) (ERYTHROCYTE
812-839
1004-1031
1617-1644

ANKYRIN)

PANKB_HUMAN
ANKYRIN, BRAIN VARIANT 1 (ANKYRIN B) (ANKYRIN,
1544-1571

NONERYTHROID)

PANKC_HUMAN
ANKYRIN, BRAIN VARIANT 2 (ANKYRIN B) (ANKYRIN,
1811-1838

NONERYTHROID)

PANPA_HUMAN
ATRIAL NATRIURETIC PEPTIDE RECEPTOR A PRECURSOR
553-580
825-852

(ANP-A) (ANPRA) (GC-A)

PANPB_HUMAN
ATRIAL NATRIURETIC PEPTIDE RECEPTOR B PRECURSOR
810-837

(ANP-B) (ANPRB) (GC-B)

PANT3_HUMAN
ANTITHROMBIN-III PRECURSOR (ATIII).
162-196

PANX2_HUMAN
ANNEXIN II (LIPOCORTIN II) (CALPACTIN I HEAVY
40-67
306-333

CHAIN) (CHROMOBINDIN 8)

PANX3_HUMAN
ANNEXIN III (LIPOCORTIN III) (PLACENTAL
215-242

ANTICOAGULANT PROTEIN III)

PANX6_HUMAN
ANNEXIN VI (LIPOCORTIN VI) (P68) (P70) (PROTEIN
60-87
626-653

III) (CHROMOBINDIN 20)

PANXI_HUMAN
ANNEXIN, INTESTINE-SPECIFIC (ISA).
37-78
137-164

PAOFA_HUMAN
AMINE OXIDASE (FLAVIN-CONTAINING) A (EC 1.4.3.4)
16-43
74-104

(MONOAMINE OXIDASE)

PAOFB_HUMAN
AMINE OXIDASE (FLAVIN-CONTAINING) B (EC 1.4.3.4)
68-95

(MONOAMINE OXIDASE)

PAPA1_HUMAN
APOLIPOPROTEIN A-I PRECURSOR (APO-AI).
57-84
585-619

PAPB_HUMAN
APOLIPOPROTEIN B-100 PRECURSOR (APO B-100/APO B-48).
1073-1100
1353-1380
1524-1584
2074-2113
2132-2159
2181-2215
2240-2271
2360-2389

2466-2507
2529-2559
2850-3000
3360-3390
3480-3570
3620-3654
4040-4074
4090-4120
4135-4167

4274-4301
4397-4438
4465-4492
4499-4544

PAPC2_HUMAN
APOLIPOPROTEIN C-II PRECURSOR (APO-CII).
36-63

PAPC_HUMAN
ADENOMATOUS POLYPOSIS COLI PROTEIN (APC PROTEIN)
145-172
617-651
834-861
1795-1822
2172-2212
2572-2609

PAPE_HUMAN
APOLIPOPROTEIN E PRECURSOR (APO-E).
48-81
247-274

PAPOA_HUMAN
APOLIPOPROTEIN (A) PRECURSOR (EC 3.4.21.-)
4448-4475

(APO (A)) (LP (A))

PAQP1_HUMAN
AQUAPORIN-CHIP (WATER CHANNEL PROTEIN FOR RED BLOOD
39-73

CELLS AND KIDNEY

PARK1_HUMAN
BETA-ADRENERGIC RECEPTOR KINASE 1 (EC 2.7.1.126)
523-553

(BETA-ARK-1).

PARLY_HUMAN
ARGININOSUCCINATE LYASE (EC 4.3.2.1)
69-103

(ARGINOSUCCINASE).

PARNT_HUMAN
ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR
223-250

(ARNT PROTEIN) (DIO

PARRC_HUMAN
BETA-ARRESTIN 2.
215-242
305-332

PARRS_HUMAN
ARRESTIN (RETINAL S-ANTIGEN) (48 KD PROTEIN) (S-AG).
299-352

PARY1_HUMAN
ARYLAMINE N-ACETYLTRANSFERASE, MONOMORPHIC
7-34

(EC 2.3.1.5) (MNAT).

PARY2_HUMAN
ARYLAMINE N-ACETYLTRANSFERASE, POLYMORPHIC
7-34

(EC 2.3.1.5) (PNAT).

PASNS_HUMAN
ASPARAGINE SYNTHETASE (GLUTAMINE-HYDROLYZING)
311-338
347-374

(EC 6.3.5.4) (TS11 CELL

PATCD_HUMAN
CALCIUM-TRANSPORTING ATPASE SARCOPLASMIC RETICULUM
163-190

TYPE (EC 3.6.1.38).

PATCE_HUMAN
CALCIUM-TRANSPORTING ATPASE ENDOPLASMIC RETICULUM
163-190

TYPE (EC 3.6.1.38).

PATF1_HUMAN
TRANSCRIPTION FACTOR ATF-1 (FRAGMENT)
203-230

PATF3_HUMAN
TRANSCRIPTION FACTOR ATF-3 (FRAGMENT).
155-183

PATF5_HUMAN
TRANSCRIPTION FACTOR ATF-5 (FRAGMENT)
30-61

PATF6_HUMAN
TRANSCRIPTION FACTOR ATF-6 (FRAGMENT).
34-68

PATFA_HUMAN
TRANSCRIPTION FACTOR ATF-A AND AFT-A-DELTA.
351-394

PATPF_HUMAN
ATP SYNTHASE B CHAIN, MITOCHONDRIAL PRECURSOR
129-163

(EC 3.6.1.34).

PB232_HUMAN
NUCLEOLAR PHOSPHOPROTEIN B23 (NUCLEOPHOSMIN)
114-141

(NUMATRIN).

PB2AR_HUMAN
BETA-2-ADRENERGIC RECEPTOR.
292-319
345-372

PB3A2_HUMAN
ANION EXCHANGE PROTEIN 2 (NON-ERYTHROID BAND
1081-1111

3-LIKE PROTEIN) (BND3L).

PB94_HUMAN
B94 PROTEIN.
115-142
525-562
609-636

PBAN7_HUMAN
ERYTHROCYTE BAND 7 INTEGRAL MEMBRANE PROTEIN.
106-140

PBASO_HUMAN
BASONUCLIN.
120-147
310-337
773-807

PBC2B_HUMAN
TRANSFORMING PROTEIN BCL-2-BETA.
178-205

PBCGF_HUMAN
B-CELL GROWTH FACTOR PRECURSOR (BCGF-12 KD).
33-63

PBCR_HUMAN
BREAKPOINT CLUSTER REGION PROTEIN.
784-825

PBGLR_HUMAN
BETA-GLUCURONIDASE PRECURSOR (EC 3.2.1.31).
246-280
504-531

PBMP2_HUMAN
BONE MORPHOGENETIC PROTEIN 2 PRECURSOR (BMP-2)
216-250

(BMP-2A).

PBMP5_HUMAN
BONE MORPHOGENETIC PROTEIN 5 PRECURSOR (BMP-5).
202-229

PBMP6_HUMAN
BONE MORPHOGENETIC PROTEIN 6 PRECURSOR (BMP-6).
274-301

PBMP7_HUMAN
BONE MORPHOGENETIC PROTEIN 7 PRECURSOR (BMP-7).
192-219

(OSTEOGENIC PROTEIN 1)

PBN51_HUMAN
BN51 PROTEIN.
284-311

PBPI_HUMAN
BACTERICIDAL PERMEABILITY INCREASING PROTEIN
168-195

PRECURSOR (BPI) (CAP 57).

PBRS3_HUMAN
BOMBESIN RECEPTOR SUBTYPE-3 (BRS-3).
10-37

PBTF2_HUMAN
BASIC TRANSCRIPTION FACTOR 62 KD SUBUNIT (P62).
128-162
353-385

PBTG1_HUMAN
BTG1 PROTEIN (B-CELL TRANSLOCATION GENE 1 PROTEIN).
26-53

PC1TC_HUMAN
C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC
330-363

(METHYLENETETRAHYDROFO

PC2TA_HUMAN
MHC CLASS II TRANSACTIVATOR CIITA.
921-948

PCA19_HUMAN
COLLAGEN ALPHA 1 (IX) CHAIN PRECURSOR.
120-150

PCA1B_HUMAN
COLLAGEN ALPHA 1 (XI) CHAIN PRECURSOR.
341-368

PCABV_HUMAN
CALBINDIN (VITAMIN D-DEPENDENT CALCIUM-BINDING
27-54

PROTEIN (CABP), AVIAN-

PCAD5_HUMAN
CADHERIN 5 PRECURSOR (7B4 ANTIGEN).
723-750

PCADE_HUMAN
EPITHELIAL-CADHERIN PRECURSOR (E-CADHERIN)
838-865

(UVOMORULIN) (CAM 120/80)

PCADN_HUMAN
NEURAL-CADHERIN PRECURSOR (N-CADHERIN).
95-122
323-350

PCADP_HUMAN
PLACENTAL-CADHERIN PRECURSOR (P-CADHERIN).
384-411
580-607

PCAGA_HUMAN
CALGRANULIN A (MIGRATION INHBITORY FACTOR-RELATED
2-29

PROTEIN 8) (MRP-8)

PCALR_HUMAN
CALCITONIN RECEPTOR PRECURSOR (CT-R).
140-167

PCAMA_HUMAN
CARTILAGE MATRIX PROTEIN PRECURSOR.
297-324
467-494

PCAP1_HUMAN
CALPAIN 1, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17)
561-588

(CALCIUM-ACTIVATED

PCAP2_HUMAN
CALPAIN 2, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17)
257-284
502-529

(CALCIUM-ACTIVATED

PCAP3_HUMAN
CALPAIN P94, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17)
674-701

(CALCIUM-

PCAPL_HUMAN
PLACENTAL CALCIUM-BINDING PROTEIN.
13-40

PCAP_HUMAN
ADENYLYL CYCLASE-ASSOCIATED PROTEIN (CAP).
111-138
163-197
321-355

PCART_HUMAN
CALRETININ (29 KD CALBINDIN)
217-244

PCASB_HUMAN
BETA CASEIN PRECURSOR.
14-48

PCATA_HUMAN
CATALASE (EC 1.11.1.6).
422-456

PCATD_HUMAN
CATHEPSIN D PRECURSOR (EC 3.4.23.5)
253-282

PCATH_HUMAN
CATHEPSIN H PRECURSOR (EC 3.4.22.16)
41-68

PCATL_HUMAN
CATHEPSIN L PRECURSOR (EC 3.4.22.15) (MAJOR
278-305

EXCRETED PROTEIN) (MEP)

PCATS_HUMAN
CATHEPSIN S PRECURSOR (EC 3.4.22.27).
30-57
142-169

PCBFB_HUMAN
CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT B (CBF-B)
24-58
138-165

(NF-Y PROTEIN

PCBG_HUMAN
CORTICOSTEROID-BINDING GLOBULIN PRECURSOR (CBG)
88-122

(TRANSCORTIN)

PCBPB_HUMAN
CARBOXYPEPTIDASE B PRECURSOR (EC 3.4.17.2)
69-129
278-305
319-346

(PANCREAS-SPECIFIC PROTEIN)

PCBPH_HUMAN
CARBOXYPEPTIDASE H PRECURSOR (EC 3.4.17.10)
355-382

(CARBOXYPEPTIDASE E) (CPE)

PCC21_HUMAN
CDC21 HOMOLOG (P1-CDC21) (FRAGMENT).
35-62

PCC27_HUMAN
PROTEIN CDC27HS.
209-240

PCCG1_HUMAN
TRANSCRIPTION INITIATION FACTOR TFIID 250 KD
1298-1342

SUBUNIT (TBP-ASSOCIATED

PCD14_HUMAN
MONOCYTE DIFFERENTIATION ANTIGEN CD14 PRECURSOR
142-169

(MYELOID CELL-SPECIFI

PCD1A_HUMAN
T-CELL SURFACE GLYCOPROTEIN CD1A PRECURSOR (CD1A
32-63
281-308

ANTIGEN) (T-CELL

PCD1E_HUMAN
T-CELL SURFACE CLYCOPROTEIN CD1E PRECURSOR (CD1E
71-104

ANTIGEN) (R2G1).

PCD20_HUMAN
B-LYMPHOCYTE ANTIGEN CD20 (B-LYMPHOCYTE SURFACE
226-255

ANTIGEN B1) (LEU-16)

PCD2R_HUMAN
CD20 RECEPTOR PRECURSOR.
226-255

PCD2_HUMAN
T-CELL SURFACE ANTIGEN CD2 PRECURSOR (T-CELL SURFACE
88-119

ANTIGEN

PCD34_HUMAN
HEMOPOIETIC PROGENITOR CELL ANTIGEN CD34 PRECURSOR
74-108

PCD37_HUMAN
LEUKOCYTE ANTIGEN CD37.
101-128

PCD3G_HUMAN
T-CELL SURFACE GLYCOPROTEIN CD3 GAMMA CHAIN
7-34

PRECURSOR (T-CELL RECEPT

PCD3L_HUMAN
CD30 LIGAND (CD30-L).
96-130
183-217

PCD4X_HUMAN
CD44 ANTIGEN, EPITHELIAL FORM PRECURSOR (CD44E)
328-355

(PHAGOCYTIC

PCD4_HUMAN
T-CELL SURFACE GLYCOPROTEIN CD4 PRECURSOR (T-CELL
44-71
240-267

SURFACE ANTIGEN

PCD53_HUMAN
LEUKOCYTE SURFACE ANTIGEN CD53.
87-114

PCD72_HUMAN
B-CELL DIFFERENTIATION ANTIGEN CD72 (LYB-2).
118-177

PCDK3_HUMAN
CELL DIVISION PROTEIN KINASE 3 (EC 2.7.1.-).
5-32

PCDK5_HUMAN
CELL DIVISION PROTEIN KINASE 5 (EC 2.7.1.-) (KINASE
5-32

PSSALRE).

PCEBB_HUMAN
CCAAT/ENHANCER BINDING PROTEIN BETA (C/EBP BETA)
296-330

(NUCLEAR FACTOR

PCENB_HUMAN
MAJOR CENTROMERE AUTOANTIGEN B (CENTROMERE
568-595

PROTEIN B) (CENP-B).

PCENC_HUMAN
CENTROMERE PROTEIN C (CENP-C) (CENTROMERE
433-460

AUTOANTIGEN C).

PCENE_HUMAN
CENTROMERIC PROTEIN E (CENP-E PROTEIN).
372-399
493-520
553-607
715-752
767-825
850-884
903-947
963-995
1080-1107

1122-1149
1179-1239
1250-1277
1340-1367
1440-1481
1486-1556
1646-1680
1684-1724
1808-1846

1852-1883
1890-1917
1940-1988
2021-2048
2288-2318
2440-2478
2498-2563

PCERU_HUMAN
CERULOPLASMIN PRECURSOR (EC 1.16.3.1) (FERROXIDASE).
913-940

PCETP_HUMAN
CHOLESTERYL ESTER TRANSFER PROTEIN PRECURSOR
71-108

PCFTR_HUMAN
CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE
158-189
802-829
895-922
1243-1270

REGULATOR (CFTR).

PCGCC_HUMAN
CGMP-GATED CATION CHANNEL PROTEIN (CYCLIC NUCLEOTIDE
216-243

PCGL_HUMAN
CYSTATHIONINE GAMMA-LYASE (EC 4.4.1.1).
315-349

PCHLR_HUMAN
CHLORDECONE REDUCTASE (EC 1.1.1.225) (CDR).
17-51

PCHOL_HUMAN
CHOROIDERAEMIA-LIKE PROTEIN.
56-97
230-257
451-478

PCHOR_HUMAN
CHOROIDERAEMIA PROTEIN (TCD PROTEIN).
112-139

PCINA_HUMAN
SODIUM CHANNEL PROTEIN, CARDIAC AND SKELETAL MUSCLE
787-814
943-970

ALPHA-SUBUNIT

PCLCA_HUMAN
CLATHRIN LIGHT CHAIN A (BRAIN AND LYMPHOCYTE LCA).
121-148

PCLCB_HUMAN
CLATHRIN LIGHT CHAIN B (BRAIN AND LYMPHOCYTE LCB).
123-157

PCLCY_HUMAN
CALCYCLIN (PROLACTIN RECEPTOR ASSOCIATED PROTEIN)
9-50

(PRA) (GROWTH

PCLUS_HUMAN
CLUSTERIN PRECURSOR (COMPLEMENT-ASSOCIATED PROTEIN
36-98
323-350
367-394

SP-40,40)

PCMGA_HUMAN
CHROMOGRANIN A PRECURSOR (CGA) (CONTAINS:
93-120
430-457

PANCREASTATIN AND WE-14)

PCNTF_HUMAN
CILIARY NEUROTROPHIC FACTOR (CNTF).
66-93

PCO02_HUMAN
TUMOR-ASSOCIATED ANTIGEN CO-029.
29-56
95-148

PCO3_HUMAN
COMPLEMENT C3 PRECURSOR.
242-276
593-620
837-867

PCO4_HUMAN
COMPLEMENT C4 PRECURSOR.
1292-1319

PCO5_HUMAN
COMPLEMENT C5 PRECURSOR.
298-342
537-564
970-997
1270-1304

PCO6_HUMAN
COMPLEMENT C6 PRECURSOR.
367-398

PCO7_HUMAN
COMPLEMENT C7 PRECURSOR.
225-261

PCOX1_HUMAN
CYTOCHROME C OXIDASE POLYPEPTIDE I (EC 1.9.3.1).
353-380

PCP70_HUMAN
CYTOCHROME P450 VII (CHOLESTEROL 7-ALPHA-
263-290
346-373

MONOOXYGENASE)

PCPCH_HUMAN
CYTOCHROME P450 IIC17 (EC 1.14.14.1) (P450-254C)
109-136

(FRAGMENT).

PCPE1_HUMAN
CYTOCHROME P450 IIE1 (EC 1.14.14.1) (P450-J)
231-258

(ETHANOL INDUCIBLE).

PCPSM_HUMAN
CARBAMOYL-PHOSPHATE SYNTHASE (AMMONIA)
112-146
420-447

MITOCHONDRIAL PRECURSOR

PCPT2_HUMAN
MITOCHONDRIAL CARNITINE PALMITOYLTRANSFERASE II
410-437

PRECURSOR

PCPT7_HUMAN
CYTOCHROME P450 XVIIA1 (P450-C17) (EC 1.14.99.9)
226-257

(STERIOD 17-ALPHA-

PCPV1_HUMAN
CYTOCHROME P450 XIXA1 (AROMATASE) (EC 1.14.14.1)
234-271

(ESTROGEN

PCR2_HUMAN
COMPLEMENT RECEPTOR TYPE 2 PRECURSOR (CR2)
986-1013

(COMPLEMENT C3D RECEPTOR)

PCRCM_HUMAN
COLORECTAL MUTANT CANCER PROTEIN (MCC PROTEIN).
68-126
379-420
633-678
724-754
763-790

PCREB_HUMAN
CAMP RESPONSE ELEMENT BINDING PROTEINS A AND B
94-125

(CREB-A AND CREB-B).

PCREP_HUMAN
CAMP RESPONSE ELEMENT BINDING PROTEIN CRE-BP1.
380-414

PCRP_HUMAN
C-REACTIVE PROTEIN PRECURSOR.
60-87
150-177

PCS1_HUMAN
CLEAVAGE SIGNAL-1 PROTEIN (CS-1).
203-233

PCSF1_HUMAN
MICROPHAGE COLONY STIMULATING FACTOR-1 PRECURSOR
143-170

(CSF-1) (MCSF).

PCST3_HUMAN
CLEAVAGE STIMULATION FACTOR, 50 KD SUBUNIT (CSTF 50
6-33

KD SUBUNIT) (CF-1

PCTNA_HUMAN
ALPHA-CATENIN (CADHERIN-ASSOCIATED PROTEIN).
681-718

PCTNR_HUMAN
ALPHA-CATENIN RELATED PROTEIN (CATENIN ALPHA-2).
680-717

PCX26_HUMAN
GAP JUNCTION BETA-2 PROTEIN (CONNEXIN 26) (CX26).
108-139

PCX32_HUMAN
GAP JUNCTION BETA-1 PROTEIN (CONNEXIN 32) (CX32)
117-144

(GAP JUNCTION 28 KD

PCX37_HUMAN
GAP JUNCTION ALPHA-4 PROTEIN (CONNEXIN 37) (CX37).
88-115

PCYB5_HUMAN
CYTOCHROME B5.
3-42

PCYG1_HUMAN
GUANYLATE CYCLASE SOLUBLE, BETA-1 CHAIN (EC 4.6.1.2)
80-107
126-153
352-396

(70 KD CHAIN)

PCYG4_HUMAN
GUANYLATE CYCLASE SOLUBLE, ALPHA-2 CHAIN (EC 4.6.1.2).
106-133

PCYGR_HUMAN
RETINAL GUANYLYL CYCLASE PRECURSOR (EC 4.6.1.2).
824-851

PCYRG_HUMAN
CYTOKINE RECEPTOR COMMON GAMMA CHAIN PRECURSOR
293-320

(GAMMA-C)

PCYTA_HUMAN
CYSTATIN A (STEFIN A) (CYSTATIN AS).
27-58

PDBL_HUMAN
PROTO-ONCOGENE DBL PRECURSOR (CONTAINS: MCF2).
233-283
485-524
766-793
801-845

PDESM_HUMAN
DESMIN.
153-180
272-312

PDESP_HUMAN
DESMOPLAKIN I AND II (DPI AND DPII) (FRAGMENT).
31-79
113-143
217-244
269-317
382-434
437-467
528-558
563-598
630-674

697-734
738-789
1456-1493
1508-1535

PDHAP_HUMAN
ALDEHYDE DEHYDROGENASE, DIMERIC NADP-PREFERRING
31-58

(EC 1.2.1.5)

PDMD_HUMAN
DYSTROPHIN
86-116
338-365
484-511
753-780
976-1003
1012-1039
1201-1228
1364-1394
1615-1674

1838-1865
2158-2185
2313-2343
2752-2779
2786-2830
2912-2958
3014-3041
3499-3533

PDNJI_HUMAN
DNAJ PROTEIN HOMOLOG.
45-76

PDNLI_HUMAN
DNA LIGASE I (EC 6.5.1.1) (POLYDEOXYRIBONUCLEOTIDE
130-157
355-392
732-759

SYNTHASE (ATP)).

PDPOA_HUMAN
DNA POLYMERASE ALPHA (EC 2.7.7.7).
25-74
1009-1057
1100-1127

PDPOD_HUMAN
DNA POLYMERASE DELTA CATALYTIC CHAIN (EC 2.7.7.7)
729-756

PDPP4_HUMAN
DIPEPTIDYL PEPTIDASE IV (EC 3.4.14.5) (DPP IV)
29-77
114-148

(T-CELL ACTIVATION

PDRN1_HUMAN
DEOXYRIBONCULEASE I PRECURSOR (EC 3.1.21.1)
44-71

(DNASE I).

PDSC2_HUMAN
DESMOCOLLIN 3A/3B PRECURSOR (DESMOSOMAL
80- 107
355-398

GLYCOPROTEIN II AND III).

PDSG1_HUMAN
DESMOGLEIN 1 PRECURSOR (DESMOSOMAL GLYCOPROTEIN 1)
15-42
271-298
497-531

(DG1).

PDSG3_HUMAN
DEXMOGLEIN 3 PRECURSOR (130 KD PEMPHIGUS VULGARIS
211-248
325-352

ANTIGEN) (PVA).

PDUG_HUMAN
DIVERGENT UPSTREAM PROTEIN (DUP)
584-618

PEAR1_HUMAN
V-ERBA RELATED PROTEIN EAR-1.
523-550

PEBI2_HUMAN
EBV-INDUCED G PROTEIN-COUPLED RECEPTOR 2 (EBI2).
44-78

PEF1B_HUMAN
ELONGATION FACTOR 1-BETA (EF-1-BETA).
105-132

PEF1D_HUMAN
ELONGATION FACTOR 1-DELTA (EF-1-DELTA).
84-118

PEGFR_HUMAN
EPIDERMAL GROWTH FACTOR RECEPTOR PRECURSOR
64-91
440-467

(EC 2.7.1.112).

PEGF_HUMAN
EPIDERMAL GROWTH FACTOR PRECURSOR, KIDNEY (EGF)
47-74

(UROGASTRONE).

PELF1_HUMAN
ETS-RELATED TRANSCRIPTION FACTOR ELF-1.
551-588

PENPL_HUMAN
ENDOPLASMIN PRECURSOR (94 KD GLUCOSE-REGULATED
47-74
246-273

PROTEIN) (GRP94) (GP96

PENV1_HUMAN
RETORVIRUS-RELATED ENV POLYPROTEIN.
382-420

PEPC_HUMAN
IG EPSILON CHAIN C REGION.
161-188

PEPMO_HUMAN
EPIMORPHIN.
35-62
67-94
249-283

PER72_HUMAN
PROTEIN DISULFIDE ISOMERASE-RELATED PROTEIN PRECURSOR
58-85
142-169
458-485

(ERP72).

PERC1_HUMAN
DNA EXCISION REPAIR PROTEIN ERCC-1.
240-270

PERC6_HUMAN
EXCISION REPAIR PROTEIN ERCC-6
160-209
939-973

PESTR_HUMAN
ESTROGEN RECEPTOR (ER).
451-488

PET2_HUMAN
ENDOTHELIN-2 PRECURSOR (ET-2).
133-160

PET3_HUMAN
ENDOTHELIN-3 PRECURSOR (ET-3).
182-209

PEV2A_HUMAN
EVI2A PROTEIN PRECURSOR.
29-56

PEZRI_HUMAN
EZRIN (P81) (CYTOVILLIN) (VILLIN-2).
119-146
351-392
402-429
512-539

PFA5_HUMAN
COAGULATION FACTOR V PRECURSOR.
2103-2137

PFA8_HUMAN
COAGULATION FACTOR VIII PRECURSOR (PROCOAGULANT
871-908
1007-1034
1194-1230

COMPONENT).

PFA9_HUMAN
COAGULATION FACTOR IX PRECURSOR (EC 3.4.21.22)
271-298

(CHRISTMAS FACTOR).

PFABI_HUMAN
FATTY ACID-BINDING PROTEIN, INTESTINAL.
98-125

PFASA_HUMAN
APOPTOSIS-MEDIATING SURFACE ANTIGEN FAS PRECURSOR
23-50
249-301
306-333

(APO-1 ANTIGEN).

PFCE2_HUMAN
LOW AFFINITY IMMUNOGLOBULIN EPSILON FC RECEPTOR
81- 115

(LYMPHOCYTE IGE

PFCEA_HUMAN
HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR ALPHA-
140-174

SUBUNIT (FCERI)

PFGR2_HUMAN
FIBROBLAST GROWTH FACTOR RECEPTOR
310-337

2 PRECURSOR (EC 2.7.1.112).

PFIBA_HUMAN
FIBRINOGEN ALPHA CHAIN PRECURSOR.
131-165
427-457

PFIBB_HUMAN
FIBRINOGEN BETA CHAIN PRECURSOR.
149-186

PFIBG_HUMAN
FIBRINOGEN GAMMA-A CHAIN PRECURSOR.
59-93
125-160

PFIBH_HUMAN
FIBRINOGEN GAMMA-G CHAIN (FIBRINOGEN GAMMA′).
59-93
125-160

PFINC_HUMAN
FIBRONECTIN PRECURSOR.
2168-2199

PFLI1_HUMAN
FLI-1 ONCOGENE (ERGB TRANSCRIPTION FACTOR).
172-209

PFMO3_HUMAN
DIMETHYLANILINE MONOOXYGENASE (N-OXIDE FORMING) 3
184-218
256-283
301-328

(EC 1.14.13.8)

PFOS_HUMAN
P55-C-FOS PROTO-ONCOGENE PROTEIN.
162-193

PFRA1_HUMAN
FOS-RELATED ANTIGEN 1.
133-168

PFRA2_HUMAN
FOS-RELATED ANTIGEN 2.
149-180

PFRIH_HUMAN
FERRITIN HEAVY CHAIN.
7-34

PFRIL_HUMAN
FERRITIN LIGHT CHAIN.
3-33

PFSHR_HUMAN
FOLLICLE STIMULATING HORMONE RECEPTOR PRECURSOR
364-395

(FSH-R).

PFUCO_HUMAN
TISSUE ALPHA-L-FUCOSIDASE PRECURSOR (EC 3.2.1.51)
308-335

(ALPHA-L-FUCOSIDASE

PFUMH_HUMAN
FUMARATE HYDRATASE, MITOCHONDRIAL (EC 4.2.1.2)
424-451

(FUMARASE).

PG0S2_HUMAN
PUTATIVE LYMPHOCYTE G0/G1 SWITCH PROTEIN.
56-83

PG19P_HUMAN
PROTEIN KINASE C SUBSTRATE, 80 KD PROTEIN, HEAVY
146-173

CHAIN (PKCSH)

PG6PI_HUMAN
GLUCOSE-6-PHOSPHATE ISOMERASE (GPI) (EC 5.3.1.9)
16-50

(PHOSPHOGLUCOSE

PG732_HUMAN
MAJOR GASTROINTESTINAL TUMOR-ASSOCIATED PROTEIN
181-215

GA733-2 PRECURSOR

PGA12_HUMAN
GALACTOKINASE 2 (EC 2.7.1.6).
254-281

PGAA1_HUMAN
GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-1 SUBUNIT
210-237

PRECURSOR (GABA(A)

PGAA3_HUMAN
GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-3 SUBUNIT
211-255

PRECURSOR (GABA(A)

PGASR_HUMAN
GASTRIN/CHOLECYSTOKININ TYPE B RECEPTOR (CCK-B
75-105

RECEPTOR).

PGB01_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(O), ALPHA
22-49

SUBUNIT 1.

PGB02_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(O), ALPHA
22-49

SUBUNIT 2.

PGBAK_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(K), ALPHA
22-49

SUBUNIT (G(I) ALPHA-3).

PGBAS_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S), ALPHA
7-34

SUBUNIT (ADENYLATE

PGBAY_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(Y), ALPHA
95-122

SUBUNIT (ALPHA-11).

PGBB3_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T)
65-92

BETA SUBUNIT 3

PGBLP_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN BETA
110-137
255-282
289-316

SUBUNIT-LIKE PROTEIN 12.3.

PGBP2_HUMAN
INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN 2
454-488

(GUANINE NUCLEOTIDE-

PGBT2_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(T), ALPHA-2
22-49

SUBUNIT (TRANSDUCIN

PGCF_HUMAN
GC-RICH SEQUENCE DNA-BINDING FACTOR (GCF)
200-227
293-320
367-394
396-423
647-674

(TRANSCRIPTION FACTOR 9)

PGCH1_HUMAN
GTP CYCLOHYDROLASE I (EC 3.5.4.16).
165-192

PGCRA_HUMAN
GLUCOCORTICOID RECEPTOR, ALPHA (GR).
167-194

PGCRB_HUMAN
GLUCOCORTICOID RECEPTOR, BETA (GR).
167-194

PGCSP_HUMAN
GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR
460-487

(EC 1.4.4.2)

PGDN_HUMAN
GLIA DERIVED NEXIN (GDN) (PROTEASE NEXIN I).
83-110

PGELS_HUMAN
GELSOLIN PRECURSOR, PLASMA (ACTIN-DEPOLYMERIZING
701-728

FACTOR) (ADF)

PGFAP_HUMAN
GLIAL FIBRILLARY ACIDIC PROTEIN, ASTROCYTE.
189-216
349-376
384-411

PGL6S_HUMAN
N-ACETYLGLUCOSAMINE-6-SULFATASE PRECURSOR
170-221

(EC 3.1.6.14) (G6S)

PGLPK_HUMAN
GLYCEROL KINASE (EC 2.7.1.30) (APT: GLYCEROL
78-112
251-278

3-PHOSPHOTRANSFERASE)

PGLY1_HUMAN
SERINE HYDROXYMETHYLTRANSFERASE, CYTOSOLIC
32-59
344—371

(EC 2.1.2.1) (SERINE

PGLY2_HUMAN
SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL
417-444

(EC 2.1.2.1) (SERINE

PGR78_HUMAN
78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78)
564-591
598-625

(IMMUNOGLOBULIN

PGRA2_HUMAN
GLYCINE RECEPTOR ALPHA-2 CHAIN PRECURSOR.
142-169
341-368

PGRAV_HUMAN
GRAVIN (FRAGMENT).
9-43
61-88

PGRFR_HUMAN
GROWTH HORMONE-RELEASING HORMONE RECEPTOR
128-155

PRECURSOR (GHRH RECEPT

PGTH2_HUMAN
GLUTATHIONE S-TRANSFERASE HA SUBUNIT 2
64-91

(EC 2.5.1.18) (GTH2) (CLASS-

PGTPA_HUMAN
GTPASE-ACTIVATING PROTEIN (GAP) (RAS P21 PROTEIN
474-501
1012-1047

ACTIVATOR).

PGTR1_HUMAN
GLUCOSE TRANSPORTER TYPE 1, ERYTHROCYTE/BRAIN.
274-301

PGTR3_HUMAN
GLUCOSE TRANSPORTER TYPE 3, BRAIN.
272-299

PGTR4_HUMAN
GLUCOSE TRANSPORTER TYPE 4, INSULIN-RESPONSIVE.
290-317

PH10_HUMAN
ISTONE H1′.
44-89

PH1A_HUMAN
HISTONE H1A (H1.1).
73-104

PH1B_HUMAN
HISTONE H1B (H1.4).
70-101

PH1C_HUMAN
HISTONE H1C (H1.3).
71-102

PH1D_HUMAN
HISTONE H1D (H1.2).
70-101

PH1T_HUMAN
HISTONE H1T.
74-105

PH2B0_HUMAN
HISTONE H2B.1.
20-47

PH2B2_HUMAN
HISTONE H2B.2.
20-47

PH2B_HUMAN
HISTONE H2B (H2B.1 A).
20-47

PHA25_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DQ(5)
142-169

ALPHA CHAIN PRECURSOR

PHB2K_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-W53
56-83

BETA CHAIN PRECURSOR

PHB2P_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP(W4)
50-77

BETA CHAIN PRECURSOR

PHB2Q_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP(W2)
50-77

BETA CHAIN PRECURSOR

PHB2S_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, SB BETA
16-43

CHAIN (FRAGMENT).

PHBG1_HUMAN
HEPARIN-BINDING GROWTH FACTOR PRECURSOR 1 (HBGF-1)
102-129

(ACIDIC FIBROBLAST

PHBG3_HUMAN
INT-2 PROTO-ONCOGENE PROTEIN PRECURSOR (HBGF-3).
61-91

PHBG6_HUMAN
FIBROBLAST GROWTH FACTOR-6 PRECURSOR (FGF-6)
41-75
159-186

(HBGF-6) (HST-2).

PHBI_HUMAN
P59 PROTEIN (HSP BINDING IMMUNOPHILIN) (HBI)
264-312

(POSSIBLE PEPTIDYL-PROLYL

PHEM4_HUMAN
UROPORPHYRINOGEN-III SYNTHASE (EC 4.2.1.75)
74-118

(UROPORPHYRINOGEN-III

PHEP2_HUMAN
HEPARIN COFACTOR II PRECURSOR (HC-II) (PROTEASE
169-196

INHIBITOR LEUSERPIN 2)

PHEPS_HUMAN
SERIN PROTEASE HEPSIN (EC 3.4.21.-).
22-49

PHEXA_HUMAN
BETA-HEXOSAMINIDASE ALPHA CHAIN PRECURSOR
356-383

(EC 3.2.1.52) (N-ACETYL-

PHEXB_HUMAN
BETA-HEXOSAMINIDASE BETA CHAIN PRECURSOR
388-415

(EC 3.2.1.52) (N-ACETYL-BETA

PHMX1_HUMAN
HOMEOBOX PROTEIN MSX-1 (HOX-7).
178-212

PHNFA_HUMAN
HEPATOCYTE NUCLEAR FACTOR 1-ALPHA (HNF-1A) (LIVER
2-29

SPECIFIC

PHO1_HUMAN
HEME OXYGENASE 1 (EC 1.14.99.3) (HO-1).
197-224

PHPPD_HUMAN
4-HYDROXYPHENYLPYRUVATE DIOXYGENASE (EC 1.13.11.27)
306-333

(4HPPD).

PHRX_HUMAN
ZINC FINGER PROTEIN HRX.
521-548
914-974
1637-1666
2215-2286
2289-2316
3317-3344
3448-3475

PHS1_HUMAN
HEMATOPOIETIC LINEAGE CELL SPECIFIC PROTEIN.
43-70

PHS9A_HUMAN
HEAT SHOCK PROTEIN HSP 90-ALPHA (HSP 86).
443-470
640-674

PHSER_HUMAN
HEAT-STABLE ENTEROTOXIN RECEPTOR PRECURSOR (GC-C)
511-545

(INTESTINAL

PHSF1_HUMAN
HEAT SHOCK FACTOR PROTEIN 1 (HSF 1) (HEAT SHOCK
113-140
168-209

TRANSCRIPTION FACTOR.

PHSF2_HUMAN
HEAT SHOCK FACTOR PROTEIN 2 (HSF 2) (HEAT SHOCK
117-198

TRANSCRIPTION FACTOR.

PHV2I_HUMAN
IG HEAVY CHAIN PRECURSOR V-II REGION (ARH-77).
67-108

PHV3T_HUMAN
IG HEAVY CHAIN V-III REGION (GAL).
47-74

PHX11_HUMAN
HOMEOBOX PROTEIN HOX-II (TCL-3 PROTO-ONOGENE).
262-289

PHXB7_HUMAN
HOMEOBOX PROTEIN HOX-B7 (HOX-2C) (HHO.C1).
135-162

PIAPP_HUMAN
ISLET AMYLOID POLYPEPTIDE
53-80

PIBP3_HUMAN
INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN 3
183-210

PRECURSOR (IGFBP-3)

PIC1_HUMAN
PLASMA PROTEASE C1 INHIBITOR PRECURSOR (C1 INH).
251-278

PICA2_HUMAN
INTERCELLULAR ADHESION MOLECULE-2 PRECURSOR (ICAM-2).
57-84

PIDE_HUMAN
INSULIN-DEGRADING ENZYME (EC 3.4.99.45) (INSULINASE)
474-504
907-941

(INSULIN

PIF41_HUMAN
EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I).
232-259
322-349

PIF4B_HUMAN
INTRINSIC FACTOR PRECURSOR (IF) (GASTRIC INTRINSIC
149-176
406-433

FACTOR).

PIF_HUMAN
INHIBIN BETA A CHAIN PRECURSOR (ACTIVIN BETA-A CHAIN)
308-349

(ERYTHROID

PIHBA_HUMAN
INTERLEUKIN-1 ALPHA PRECURSOR (IL-1 ALPHA)
80-107
183-210

(HEMATOPOIETIN-1).

PIL1A_HUMAN
INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-1R1)
76-110
172-199

(P80).

PIL1R_HUMAN
INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-1R1)
437-467

(P80).

PIL1S_HUMAN
INTERLEUKIN-1 RECEPTOR, TYPE II PRECURSOR (IL-1R2).
159-186

PIL5R_HUMAN
INTERLEUKIN-5 RECEPTOR ALPHA CHAIN PRECURSOR
87-114

(IL-5R-ALPHA).

PIL6_HUMAN
INTERLEUKIN-6 PRECURSOR (IL-6) (B-CELL STIMULATORY
112-139

FACTOR 2) (BSF-2)

PINAI_HUMAN
INTERFERON ALPHA-1 PRECURSOR.
94-121

PINAR_HUMAN
INTERFERON ALPHA RECEPTOR PRECURSOR (IFN-ALPHA-REC).
90-117
164-191
300-327
508-535

PINB_HUMAN
INTERFERON BETA PRECURSOR (FIBROBLAST).
88-129

PINI1_HUMAN
INTERFERON-INDUCED 17 KD PROTEIN (CONTAINS:
83-121

INTERFERON-INDUCED 15 KD

PINI6_HUMAN
INTERFERON-INDUCED 56 KD PROTEIN (IFI-56K).
51-78
216-245
393-430

PINSR_HUMAN
INSULIN RECEPTOR PRECURSOR (EC 2.7.1.112) (IR).
592-619

PINVO_HUMAN
INVOLUCRIN.
119-146
229-273
326-363
386-450

PIP3K_HUMAN
1D-MYO-INOSITOL-TRISPHOSPHATE 3-KINASE A
121-162

(EC 2.7.1.127) (INOSITOL

PIPSP_HUMAN
PLASMA SERINE PROTEASE (PROTEIN C) INHIBITOR
90-117
206-233

PRECURSOR (PCI)

PIRBP_HUMAN
INTERPHOTORECEPTOR RETINOID-BINDING PROTEIN
670-697

PRECURSOR (IRBP)

PIRF2_HUMAN
INTERFERON REGULATORY FACTOR 2 (IRF-2).
157-193

PIT5P_HUMAN
75 KD INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE
235-262

PRECURSOR

PITA2_HUMAN
PLATELET MEMBRANE GLYCOPROTEIN IA PRECURSOR (GPIA)
579-606
900-927

(COLLAGEN RECEPTO

PITA5_HUMAN
FIBRONECTIN RECEPTOR ALPHA SUBUNIT PRECURSOR
250-284
657-695
765-792

(INTEGRIN ALPHA-F)

PITA6_HUMAN
INTEGRIN ALPHA-6 PRECURSOR (VLA-6) (INTEGRIN
884-911
944-974

ALPHA-E) (CD49F).

PITAL_HUMAN
LEUKOCYTE ADHESION GLYCOPROTEIN LFA-1 ALPHA CHAIN
256-283
310-341
795-822

PRECURSOR (LEUKOC

PITAM_HUMAN
CELL SURFACE GLYCOPROTEIN MAC-1 ALPHA SUBUNIT
1044-1078

PRECURSOR (CR-3 ALPHA

PITAV_HUMAN
VITRONECTIN RECEPTOR ALPHA SUBUNIT PRECURSOR
230-264

(INTEGRIN ALPHA-V)

PITB1_HUMAN
FIBRONECTIN RECEPTOR BETA SUBUNIT PRECURSOR
218-245
354-399

(INTEGRIN BETA-1) (CD29)

PITB2_HUMAN
CELL SURFACE ADHESION GLYCOPROTEINS LFA-1, CR3 AND
339-366
705-732

P150,95, BETA-

PITB3_HUMAN
PLATELET MEMBRANE GLYCOPROTEIN IIIA PRECURSOR
324-351

(GPIIIA) (INTEGRIN BETA-

PITB4_HUMAN
INTEGRIN BETA-4 SUBUNIT PRECURSOR (GP150).
342-369

PITB5_HUMAN
INTEGRIN BETA-5 SUBUNIT PRECURSOR.
724-751

PITB6_HUMAN
INTEGRIN BETA-6 SUBUNIT PRECURSOR.
311-338
352-393

PITB8_HUMAN
INTEGRIN BETA-8 SUBUNIT PRECURSOR.
362-399
696-737

PITI2_HUMAN
INTER-ALPHA-TRYPSIN INHIBITOR COMPLEX COMPONENT II
134-161
425-452
772-818

PRECURSOR

PK1CJ_HUMAN
KERATIN, TYPE I CYTOSKELETAL 10 (CYTOKERATIN 10).
154-187
196-227
337-399
428-462

(K10)

PK1CM_HUMAN
KERATIN, TYPE I CYTOSKELETAL 13 (CYTOKERATIN 13).
112-142

(K13)

PK1CN_HUMAN
KERATIN, TYPE I CYTOSKELETAL 14 (CYTOKERATIN 14).
122-152
306-335
393-424

(K14)

PK1CO_HUMAN
KERATIN, TYPE I CYTOSKELETAL 15 (CYTOKERATIN 15).
113-143

(K15)

PK1CP_HUMAN
KERATIN, TYPE I CYTOSKELETAL 16 (CYTOKERATIN 16).
308-339

(K16)

PK1CQ_HUMAN
KERATIN, TYPE I CYTOSKELETAL 17 (CYTOKERATIN 17).
122-152
302-346
393-431

(K17)

PK1CR_HUMAN
KERATIN, TYPE I CYTOSKELETAL 18 (CYTOKERATIN 18).
87-114
251-298
337-385

(K18)

PK1CS_HUMAN
KERATIN, TYPE I CYTOSKELETAL 19 (CYTOKERATIN 19).
88-118
317-362
370-397

(K19).

PK2C1_HUMAN
KERATIN, TYPE I CYTOSKELETAL 1 (CYTOKERATIN 1) (K1)
196-226
346-384
390-467

(CYTOSKELETAL 67

PK2C2_HUMAN
KERATIN, TYPE II CYTOSKELETAL 65 KD.
215-248
364-405
461-488

PK2C4_HUMAN
KERATIN, TYPE II CYTOSKELETAL 4 (CYTOKERATIN 4) (K4)
42-73
126-153
189-248

(FRAGMENT).

PK2C5_HUMAN
KERATIN, TYPE II CYTOSKELETAL 5 (CYTOKERATIN 5) (K5)
185-246
332-373

(58 KD

PK2C6_HUMAN
KERATIN, TYPE II CYTOSKELETAL 6 (CYTOKERATIN 6)
178-239
325-366
422-449

(K6B KERATIN).

PK2C8_HUMAN
KERATIN, TYPE II CYTOSKELETAL 8 (CYTOKERATIN 8) (K8)
140-167

PK2CA_HUMAN
KERATIN, TYPE II CYTOSKELETAL 56 KD (K6A KERATIN)
7-34
120-161
217-244

(FRAGMENT).

PK6PF_HUMAN
6-PHOSPHOFRUCTOKINASE, MUSCLE TYPE (EC 2.7.1.11)
140-167

(PHOSPHOFRUCTOKINASE

PK6PL_HUMAN
6-PHOSPHOFRUCTOKINASE, LIVER TYPE (EC 2.7.1.11)
49-80
128-159

(PHOSPHOFRUCTOKINASE

PKABL_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL
498-525

(EC 2.7.1.112) (P150)

PKAC_HUMAN
IG KAPPA CHAIN C REGION.
37-85

PKALM_HUMAN
KALLMANN SYNDROME PROTEIN PRECURSOR (ADHESION
380-414

MOLECULE-LIKE X-LINK

PKAP0_HUMAN
CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA
179-206

REGULATORY CHAIN

PKAP1_HUMAN
CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA
177-204

REGULATORY CHAIN

PKAP2_HUMAN
CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA
175-202
290-317

REGULATORY CHAIN

PKBF1_HUMAN
NUCLEAR FACTOR KAPPA-B SUBUNIT-1 (NF-KAPPA-B P105
529-570

SUBUNIT)

PKCRB_HUMAN
CREATINE KINASE, B CHAIN (EC 2.7.3.2).
301-328

PKECK_HUMAN
TYROSINE PROTEIN-KINASE ECK PRECURSOR (EC 2.7.1.112)
466-493

(EPITHELIAL CELL

PKFER_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FER
219-246
564-591

(EC 2.7.1.112) (P94-FER)

PKFES_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FES/FPS
101-145
295-322

(EC 2.7.1.112) (C-FES)

PKFLT_HUMAN
RECEPTOR-RELATED TYROSINE KINASE FLT PRECURSOR
208-235
319-353

(EC 2.7.1.112).

PKFMS_HUMAN
MACROPHAGE COLONY STIMULATING FACTOR I RECEPTOR
293-320

PRECURSOR (CSF-1-R)

PKFYN_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FYN
199-233

(EC 2.7.1.112) (P59-FYN)

PKGPB_HUMAN
CGMP-DEPENDENT PROTEIN KINASE, BETA ISOZYME (CGK)
17-54

(EC 2.7.1.37).

PKHEK_HUMAN
TYROSINE KINASE HEK RECEPTOR PRECURSOR (EC 2.7.1.112)
646-673

PKINH_HUMAN
KINESIN HEAVY CHAIN.
125-155
425-452
471-542
633-680
689-716
872-899

PKKIT_HUMAN
KIT PROTO-ONCOGENE TYROSINE KINASE PRECURSOR
235-263

(EC 2.7.1.112)

PKMET_HUMAN
HEPATOCYTE GROWTH FACTOR RECEPTOR PRECURSOR
898-925

(MET PROTO-ONCOGENE

PHNH_HUMAN
KININOGEN, HMW PRECURSOR (ALPHA-2-THIOL PROTEINASE
505-532

INHIBITOR)

PKP58_HUMAN
GALACTOSYLTRANSFERASE ASSOCICATED PROTEIN KINASE
81-108

P58/GTA (EC 2.7.1.-)

PKP68_HUMAN
INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED
149-179
191-225
285-312

PROTEIN KINASE

PKP78_HUMAN
PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78
582-609

(EC 2.7.1.-).

PKPCL_HUMAN
PROTEIN KINASE C, ETA TYPE (EC 2.7.1.-) (NPKC-ETA)
318-345

(PKC-L).

PKPT1_HUMAN
SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1-).
149-176
209-253

PKPY1_HUMAN
PYRUVATE KINASE, M1 (MUSCLE) ISOZYME (EC 2.7.1.40)
243-289

(CYTOSOLIC THYROID

PKPY2_HUMAN
PYRUVATE KINASE, M2 (ISOZYME) (EC 2.7.1.40).
243-289

PKPYR_HUMAN
PYRUVATE KINASE, ISOZYME R (EC 2.7.1.40).
2-29

PKRET_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RET
183-217

(EC 2.7.1.112).

PKROS_HUMAN
ROS PROTO-ONCOGENE TYROSINE KINASE (EC 2.7.1.112)
157-203

(FRAGMENT).

PKSRC_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC
143-170

(EC 2.7.1.112) (P60-SRC)

PKU7_HUMAN
LUPUS KU AUTOANTIGEN PROTEIN P70 (70 KD SUBUNIT OF
235-279

KU ANTIGEN).

PKU86_HUMAN
LUPUS KU AUTOANTIGEN PROTEIN P86 (86 KD SUBUNIT OF
258-292

KU ANTIGEN).

PKYES_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE YES
209-243

(EC 2.7.1.112) (P61-YES)

PLAM1_HUMAN
LAMIN B1.
32-66
117-144
152-193
214-241
397-424
480-507
510-539

PLAMA_HUMAN
LAMIN A (70 KD LAMIN).
32-88
114-165
292-343

PLAMC_HUMAN
LAMIN C.
32-88
114-165
292-343

PLAR_HUMAN
LAR PROTEIN PRECURSOR (LEUKOCYTE ANTIGEN RELATED)
935-969

(EC 3.1.3.48).

PLA_HUMAN
LUPUS LA PROTEIN (SJOGREN SYNDROME TYPE B ANTIGEN
191-222
295-342

(SS-B))

PLCAT_HUMAN
PHOSPHATIDYLCHOLINE-STEROL ACYLTRANSFERASE
131-158

PRECURSOR (EC 2.3.1.43)

PLDHH_HUMAN
L-LACTATE DEHYDROGENASE H CHAIN (EC 1.1.1.27)
81-108
302-329

(LDH-B).

PLDHM_HUMAN
L-LACTATE DEHYDROGENASE M CHAIN (EC 1.1.1.27)
225-252

(LDH-A).

PLDLR_HUMAN
LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR.
483-510

PLECH_HUMAN
ASIALOGLYCOPROTEIN RECEPTOR 1 (HEPATIC LECTIN H1)
62-96

(ASGPR).

PLEM3_HUMAN
P-SELECTIN PRECURSOR (GRANULE MEMBRANE PROTEIN 140)
32-59
87-116

(GMP-140) (PADGEM)

PLGUL_HUMAN
LACTOYLGLUTATHIONE LYASE (EC 4.4.1.5)
83-117

(METHYLGLYOXALASE)

PLIF_HUMAN
LEUKAEMIA INHIBITORY FACTOR PRECURSOR (LIF)
95-122

(DIFFERENTIATION-

PLIN1_HUMAN
LINE-1 REVERSE TRANSCRIPTASE HOMOLOG.
152-179
232-263
298-358
671-698
874-901
1036-1066

PLIPG_HUMAN
TRIACYLGLYCEROL LIPASE PRECURSOR (EC 3.1.1.3)
158-185

(LIPASE, GASTRIC).

PLIPS_HUMAN
HORMONE SENSITIVE LIPASE (EC 3.1.1.-) (HSL).
305-332

PLKHA_HUMAN
LEUKOTRIENE A-4 HYDROLASE (EC 3.3.2.6) (LTA-4
42-83
290-324

HYDROLASE) (LEUKOTRIENE

PLMA_HUMAN
LAMININ A CHAIN PRECURSOR.
1318-1345
1741-1771
1785-1812
1824-1851
1884-1921
1965-1999
2026-2059
2091-2118

PLMB1_HUMAN
LAMININ B1 CHAIN PRECURSOR.
1267-1314
1364-1394
1597-1631
1651-1714
1722-1781

PLMB2_HUMAN
LAMININ B2 CHAIN PRECURSOR.
1103-1135
1513-1547

PLMP2_HUMAN
LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 2
155-182

PRECURSOR (LAMP-2).

PLOX2_HUMAN
ARACHIDONATE 12-LIPOXYGENASE (EC 1.13.11.31)
341-368

(12-LOX).

PLOX5_HUMAN
ARACHIDONATE 5-LIPOXYGENASE (EC 1.13.11.34)
50-87

(5-LIPOXYGENASE) (5-LO).

PLPH_HUMAN
LACTASE-PHLORIZIN HYDROLASE PRECURSOR (EC 3.2.1.108)
776-803

(EC 3.2.1.62)

PLRPB_HUMAN
PROTEIN-TYROSINE PHOSPHATASE BETA PRECURSOR
140-167
589-637

(EC 3.1.3.48) (PTP-BETA).

PLRPG_HUMAN
PROTEIN-TYROSINE PHOSPHATASE GAMMA PRECURSOR
1081-1108

(EC 3.1.3.48)

PLRPZ_HUMAN
PROTEIN-TYROSINE PHOSPHATASE ZETA PRECURSOR
553-587
1024-1051
1973-2000

(EC 3.1.3.48) (PTP-ZETA).

PLSHR_HUMAN
LUTROPIN-CHORIOGONALDOTROPIC HORMONE RECEPTOR
66-114
448-480

PRECURSOR (LH/CG-R)

PLV2B_HUMAN
IG LAMBDA CHAIN V-II REGION (NEI).
61-88

PLYAG_HUMAN
LYSOSOMAL ALPHA-GLUCOSIDASE PRECURSOR (EC 3.2.1.20)
885-912

(ACID MALTASE).

PM2OM_HUMAN
MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER PROTEIN
50-77

(OGCP).

PMAC2_HUMAN
GALACTOSE-SPECIFIC LECTIN (MAC-2 ANTIGEN)
219-246

(IGE-BINDING PROTEIN) (35 KD

PMAN9_HUMAN
MAN(9)-ALPHA-MANNOSIDASE (EC 3.2.1.-).
414-441

PMANA_HUMAN
MANNOSE-6-PHOSPHATE ISOMERASE (EC 5.3.1.8)
60-87

(PHOSPHOMANNOSE ISOMERASE)

PMANR_HUMAN
MACROPHAGE MANNOSE RECEPTOR PRECURSOR
248-284
1147-1182

PMAP2_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN 2 (FRAGMENT).
434-478

PMAP4_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN 4.
408-449

PMAX_HUMAN
MAX PROTEIN.
117-144

PMDM2_HUMAN
MDM2 PROTEIN (P53-ASSOCIATED PROTEIN).
235-288

PMDR1_HUMAN
MULTIDRUG RESISTANCE PROTEIN 1 (P-GLYCOPROTEIN 1).
561-595

PMERL_HUMAN
MERLIN (SCHWANNOMIN).
377-407
532-566

PMERO_HUMAN
MEROSIN HEAVY CHAIN (LAMININ CHAIN A2) (FRAGMENT).
71-105
139-173
431-458
791-818

PMGMT_HUMAN
METHYLATED-DNA-PROTEIN-CYSTEINE METHYLTRANSFERASE
91-118

(EC 2.1.1.63) (6-O-

PMKLP_HUMAN
MITOTIC KINESIN-LIKE PROTEIN-1.
207-234
319-346
510-537
549-608

PMLCH_HUMAN
MELANIN-CONCENTRATING HORMONE PRECURSOR.
8-35

PMLK1_HUMAN
MIXED LINEAGE KINASE 1 (EC 2.7.1.-) (FRAGMENT).
130-157
321-348

PMMSA_HUMAN
METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE
393-420

PMOES_HUMAN
MOESIN (MEMBRANE-ORGANIZING EXTENSION SPIKE PROTEIN).
119-146
351-403

PMPCP_HUMAN
MITOCHONDRIAL PHOSPHATE CARRIER PROTEIN PRECURSOR.
286-313

PMPI3_HUMAN
M-PHASE INDUCER PHOSPHATASE 3 (EC 3.1.3.48).
72-99

PMPKK_HUMAN
DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE
19-50

KINASE (EC 2.7.1.-)

PMPRI_HUMAN
CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR
1569-1596
2437-2478

PRECURSOR (CI MAN-6-

PMRP_HUMAN
MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN.
396-423
507-548

PMSHR_HUMAN
MELANOCYTE STIMULATING HORMONE RECEPTOR (MSH-R)
38-65

(MELANOTROPIN

PMSRE_HUMAN
MACROPHAGE SCAVENGER RECEPTOR TYPES I AND II
173-204
230-260

(MACROPHAGE ACETYLATED

PMTDM_HUMAN
DNA (CYTOSINE-5)-METHYLTRANSFERASE (EC 2.1.1.37)
387-414
601-628

(DNA

PMTF1_HUMAN
MITOCHONDRIAL TRNASCRIPTION FACTOR 1 PRECURSOR
181-212

(MTTF1).

PMUTA_HUMAN
METHYLMALONYL-COA MUTASE PRECURSOR (EC 5.4.99.2)
468-519

(MCM)

PMX1_HUMAN
INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN
108-150

MXA (INTERFERON-

PMX2_HUMAN
INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN
451-489
670-697

MXB (P78 RELATED

PMYBA_HUMA
MYB-RELATED PROTEIN A (FRAGMENT).
619-646

PMYBB_HUMAN
MYB-RELATED PROTEIN B.
87-117

PMYCN_HUMA
N-MYC PROTO-ONCOGENE PROTEIN.
263-300
413-461

PMYC_HUMAN
MYC PROTO-ONCOGENE PROTEIN.
393-422

PMYF4_HUMAN
MYOGENIC FACTOR MYF-4 (MYOGENIN).
119-146

PMYF5_HUMAN
MYOGENIC FACTOR MYF-5.
121-148

PMYP2_HUMAN
MYOGENIC P2 PROTEIN.
70-110

PMYPR_HUMAN
MYELIN PROTEOLIPID PROTEIN (PLP) (LIPOPHILIN)
43-70

(CONTAINS: MYELIN

PMYSA_HUMAN
MYOSIN HEAVY CHAIN, CARDIAC MUSCLE ALPHA ISOFORM
38-75
84-111
137-178
236-324
398-435
440-485

(FRAGMENT).

PMYSB_HUMAN
MYOSIN HEAVY CHAIN, CARDIAC MUSCLE BETA ISOFORM.
48-75
951-981
997-1044
1088-1122
1192-1234
1266-1332
1360-1408
1442-1479
1488-1532

1541-1582
1640-1681
1683-1710
1801-1838

PMYSE_HUMAN
MYOSIN HEAVY CHAIN, FAST SKELETAL MUSCLE, EMBRYONIC.
46-73
860-903
952-1077
1119-1146
1193-1235
1267-1340
1364-1411
1483-1597
1641-1675

1707-1734
1827-1858

PMYSP_HUMAN
MYOSIN HEAVY CHAIN, PERINATAL CARDIAC MUSCLE
50-77
95-125
141-188
215-272
403-483
507-552
586-624
685-736
784-818

(FRAGMENT)

823-907
946-987
1049-1076

PMYSS_HUMAN
MYOSIN HEAVY CHAIN, SKELETAL MUSCLE (FRAGMENT).
133-160
193-280
304-349
423-460
468-526
581-608
645-681
743-798
808-835

846-873

PMYT1_HUMAN
MYELIN TRANSCRIPTION FACTOR 1 (MYTI) (FRAGMENT)
640-678

PNACA_HUMAN
SODIUM/CALCIUM EXCHANGER PRECURSOR (NA+/CA2+-
492-519
594-621
705-735

EXCHANGE PROTEIN).

PNCA2_HUMAN
NEURAL CELL ADHESION MOLECULE, PHOSPHATIDYLINOSITOL-
255-282

LINKED ISOFORM

PNCF1_HUMAN
NEUTROPHIL CYTOSOL FACTOR 1 (NCF-47K) (47 KD
234-261
310-337

AUTOSOMAL CHRONIC

PNCF2_HUMAN
NEUTROPHIL NADPH OXIDASE FACTOR (P67-PHOX).
5-32

PNEFA_HUMAN
DNA-BINDING PROTEIN NEFA PRECURSOR.
50-77
82-112
343-395

PNEP_HUMAN
NEPRILYSIN (EC 3.4.24.11) (NEUTRAL ENDOPEPTIDASE)
170-216
644-671

(NEP)

PNF1_HUMAN
NEUROFIBROMIN (NEUROFIBROMATOSIS-RELATED PROTEIN
1145-1172
1388-1422
1639-1666

NF-1) (FRAGMENT).

PNFH_HUMAN
NEUROFILAMENT TRIPLET H PROTEIN (200 KD
91-128
431-490

NEUROFILAMENT PROTEIN) (NF-H).

PNFL_HUMAN
NEUROFILAMENT TRIPLET L PROTEIN (68 KD NEUROFILAMENT
92-126
441-468

PROTEIN) (NF-L).

PNFM_HUMAN
NEUROFILAMENT TRIPLET M PROTEIN (160 KD NEUROFILAMENT
101-141
164-194
215-280
315-372
737-764
794-826
872-913

PROTEIN) (NF-M).

PNK1R_HUMAN
SUBSTANCE-P RECEPTOR (SPR) (NK-1 RECEPTOR) (NK-1R).
338-365

PNK4_HUMAN
NATURAL KILLER CELLS PROTEIN 4 PRECURSOR.
166-193

PNKCR_HUMAN
NK-TUMOR RECOGNITION PROTEIN (NATURAL-KILLER CELLS
187-214
448-475
559-599
701-742
816-843
1080-1133

CYCLOPHILIN-

PNKGA_HUMAN
NKG2-A AND NKG2-B TYPE II INTEGRAL MEMBRANE
28-55

PROTEINS.

PNOS1_HUMAN
NITRIC-OXIDE SYNTHASE, BRAIN (EC 1.14.13.39) (NOS,
389-416
1116-1146
1292-1319

TYPE I).

PNOS3_HUMAN
NITRIC-OXIDE SYNTHASE, ENDOTHELIAL (EC 1.14.13.39)
389-416

(EC-NOS) (NOS,

PNTGI_HUMAN
SODIUM- AND CHLORIDE-DEPENDENT GABA TRANSPORTER 1.
131-158

PNTR_HUMAN
NEUROTENSIN RECEPTOR (NT-R).
57-84

PNTSE_HUMAN
SODIUM DEPENDENT SEROTONIN TRANSPORTER (5HT
71-98

TRANSPORTER) (5HTT)

PNTTA_HUMAN
SODIUM- AND CHLORIDE-DEPENDENT TAURINE TRANSPORTER.
120-147

PNU2M_HUMAN
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2 (EC 1.6.5.3).
202-240

PNU4M_HUMAN
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (EC 1.6.5.3).
164-191
372-399

PNUBN_HUMAN
NUCLEOBINDIN PRECURSOR.
46-73
360-387

PNUCL_HUMAN
NUCLEOLIN (PROTEIN C23).
462-508

PNY3R_HUMAN
PUTATIVE NEUROPEPTIDE Y RECEPTOR TYPE 3 (NPY3-R)
115-142

(FB22) (NPYRL)

POAT_HUMAN
ORNITHINE AMINOTRANSFERASE PRECURSOR (EC 2.6.1.13)
98-128

(ORNITHINE-OXO-

POC3A_HUMAN
OCTAMER-BINDING TRANSCRIPTION FACTOR 3A (OCT-3A).
139-173

POC3B_HUMAN
OCTAMER-BINDING TRANSCRIPTION FACTOR 3B (OCT-3B).
37-78

POCRL_HUMAN
LOWE'S OCULOCEREBRORENAL SYNDROME PROTEIN.
704-735

PODB2_HUMAN
LIPOAMIDE ACYLTRANSFERASE COMPONENT (E2) PRECURSOR
100-127
375-402

OF BRANCHED-CHAI

PODP2_HUMAN
DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT (E2)
72-99

OF PYRUVATE

POMGP_HUMAN
OLIGODENDROCYTE-MYELIN GLYCOPROTEIN PRECURSOR
53-80

(OMG).

POPSB_HUMAN
BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR
220-247

PIGMENT).

POPSG_HUMAN
GREEN-SENSITIVE OPSIN (GREEN CONE PHOTORECEPTOR
90-117
239-266

PIGMENT).

POPSR_HUMAN
RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT).
90-117
239-266

POSTP_HUMAN
OSTEOPONTIN PRECURSOR (BONE SIALOPROTEIN 1)
239-266

(URINARY STONE PROTEIN)

POTC_HUMAN
ORNITHINE CARBAMOYLTRANSFERASE PERCURSOR (EC 2.1.3.3).
170-204

POTNC_HUMAN
OSTEONECTIN PRECURSOR (BASEMENT MEMBRANE PROTEIN
173-207

BM-40).

POXYB_HUMAN
OXYSTEROL-BINDING PROTEIN.
89-123
190-217
290-317
577-604

POXYR_HUMAN
OXYTOCIN RECEPTOR (OT-R).
350-377

PP107_HUMAN
RETINOBLASTOMA-ASSOCIATED PROTEIN-LIKE 107 KD
159-186
422-449

HOMOLOG (P107)

PP1DP_HUMAN
DNA POLYMERASE ALPHA HOLOENZYME-ASSOCIATED
19-60
637-664

PROTEIN P1.

PP47_HUMAN
PLECKSTRIN (P47).
298-325

PP4HA_HUMAN
PROLYL 4-HYDROXYLASE ALPHA SUBUNIT PRECURSOR
29-69
191-218

(EC 1.14.11.2)

PP60_HUMAN
MITOCHONDRIAL MATRIX PROTEIN P1 PRECURSOR (P60
72-99
271-298
361-407

LYMPHOCYTE PROTEIN)

PP85A_HUMAN
PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA
12-39
428-476
586-613
688-715

SUBUNIT (P13-KINASE

PPAP1_HUMAN
PANCREATITIS ASSOCIATED PROTEIN 1 PRECURSOR.
77-104

PPAX5_HUMAN
PAIRED BOX PROTEIN PAX-5 (B-CELL SPECIFIC
157-187

TRANSCRIPTION FACTOR)

PPDGA_HUMAN
PLATELET-DERIVED GROWTH FACTOR, A CHAIN PRECURSOR
38-65

(PDGF A-CHAIN)

PPEC1_HUMAN
PLATELET ENDOTHELIAL CELL ADHESION MOLECULE
685-719

PRECURSOR (PECAM-1)

PPENK_HUMAN
PROENKEPHALIN A PRECURSOR.
142-176

PPERE_HUMAN
EOSINOPHIL PEROXIDASE PRECURSOR (EC 1.11.1.7) (EPO)
308-335

(FRAGMENT)

PPERF_HUMAN
PERFORIN 1 PRECURSOR (P1) (LYMPHOCYTE PORE FORMING
411-438

PROTEIN) (PFP)

PPF4L_HUMAN
PLATELET BASIC PROTEIN PRECURSOR (PBP) (CONTAINS:
21-55

CONNECTIVE-TISSUE

PPGCA_HUMAN
CARTILAGE-SPECIFIC PROTEOGLYCAN CORE PROTEIN
73-100

PRECURSOR (CSPCP)

PPGCS_HUMAN
LARGE FIBROBLAST PROTEOGLYCAN PRECURSOR (VERSICAN)
64-98
1390-1417
1553-1580

(CHONDROITIN

PPGDH_HUMAN
15-HYDROXYPROSTAGLANDIN DEHYDROGENASE (NAD(+))
87-118

(EC 1.1.1.141) (PGDH)

PPGDR_HUMAN
BETA PLATELET-DERIVED GROWTH FACTOR RECEPTOR
294-321
354-384
465-495

PRECURSOR (EC 2.7.1.112).

PPGDS_HUMAN
ALPHA PLATELET-DERIVED GROWTH FACTOR RECEPTOR
64-94
347-395
461-488
524-551
986-1058

PRECURSOR

PPGHS_HUMAN
PROSTAGLANDIN G/H SYNTHASE PRECURSOR (EC 1.14.99.1)
331-358

(CYCLOOXYGENSE)

PPGS1_HUMAN
BONE/CARTILAGE PROTEOGLYCAN I PRECURSOR (BIGLYCAN)
100-127

(PG-S1)

PPH4H_HUMAN
PHENYLALANINE-4-HYDROXYLASE (EC 1.14.16.1) (PAH)
239-266

(PHE-4-

PPHB_HUMAN
PROHIBITIN.
41-68

PPHOS_HUMAN
PHOSDUCIN (33 KD PHOTOTRANSDUCING PROTEIN) (MEKA
184-225

PROTEIN).

PPHS1_HUMAN
GLYCOGEN PHOSPHORYLASE, LIVER FORM (EC 2.4.1.1).
116-143

PPHS2_HUMAN
GLYCOGEN PHOSPHORYLASE, MUSCLE FORM (EC 2.4.1.1).
532-559

PPHS3_HUMAN
GLYCOGEN PHOSPHORYLASE, BRAIN FORM (EC 2.4.1.1).
533-560

PPIP4_HUMAN
1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE
908-935

PHOSPHODIESTERASE BETA 2

PPIP5_HUMAN
1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE
142-169
239-266

PHOSPHODIESTERASE GAMMA 2

PPLAK_HUMAN
PLAKOGLOBIN (DESMOPLAKIN III)
373-400

PPLSL_HUMAN
L-PLASTIN (FIMBRIN).
507-534

PPLST_HUMAN
T-PLASTIN (FIMBRIN).
510-561

PPM22_HUMAN
PERIPHERAL MYELIN PROTEIN 22 (PMP-22)
3-33

PPMGB_HUMAN
PHOSPHOGLYCERATE MUTASE, BRAIN FORM (EC 5.4.2.1)
81-111

(PGAM-B) (EC 5.4.2.4)

PPMGM_HUMA
PHOSPHOGLYCERATE MUTASE, MUSCLE FORM (EC 5.4.2.1)
81-115

(PGAM-M)

PPML1_HUMAN
PROBABLE TRANSCRIPTION FACTOR PML-1.
551-585

PPMLX_HUMAN
PROBABLE TRANSCRIPTION FACTOR PML-X
551-585

PPMSC_HUMAN
AUTOANTIGEN PM-SCL.
103-130

PPOGA_HUMAN
DNA-BINDING PROTEIN PO-GA.
14-51
182-209
610-637
667-699

PPOL1_HUMAN
RETROVIRUS-RELATED POL POLYPROTEIN (REVERSE
774-804

TRANSCRIPTASE

PPOL2_HUMAN
RETROVIRUS-RELATED POL POLYPROTEIN (FRAGMENT).
78-138
171-205

PPOR1_HUMAN
OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN
33-76
189-216

(VOLTAGE-DEPENDENT ANIO

PPPAP_HUMAN
PROSTATIC ACID PHOSPHATASE PRECURSOR (EC 3.1.3.2).
235-269

PPPAS_HUMAN
RED CELL ACID PHOPHATASE 1, ISOZYME S (EC 3.1.3.2)
26-53

(ACP1).

PPPOL_HUMAN
NAD(+) ADP-RIBOSYLTRANSFERASE (EC 2.4.2.30)
699-729
972-1003

(POLY(ADP-RIBOSE)

PPRC2_HUMAN
PROTEASOME COMPONENT C2 (EC 3.4.99.46) (MACROPAIN
39-66

SUBUNIT C2)

PPRC3_HUMAN
PROTEASOME COMPONENT C3 (EC 3.4.99.46) (MACROPAIN
34-61

SUBUNIT C3)

PPRC9_HUMAN
PROTEASOME COMPONENT C9 (EC 3.4.99.46) (MACROPAIN
203-261

SUBUNIT C9)

PPRGR_HUMAN
PROGESTERONE RECEPTOR (PR) (FORMS A AND B).
846-890

PPRTS_HUMAN
VITAMIN K-DEPENDENT PROTEIN S (BLOOD CLOTTING)
337-371

PRECURSOR.

PPRTZ_HUMAN
VITAMIN K-DEPENDENT PROTEIN Z PRECURSOR.
29-56

PPSOR_HUMAN
PSORIASIN.
65-92

PPSPD_HUMAN
PULMONARY SURFACTANT-ASSOCIATED PROTEIN D PRECURSOR
224-251

(PSP-D) (SP-D).

PPTHY_HUMAN
PARATHYROID HORMONE PRECURSOR (PARATHYRIN).
86-113

PPTN1_HUMAN
PROTEIN-TYROSINE PHOSPHATASE 1B (EC 3.1.3.48)
136-177

(PTP-1B).

PPTN2_HUMAN
T-CELL PROTEIN-TYROSINE PHOSPHATASE (EC 3.1.3.48)
59-86
138-178

(TCPTP).

PPTN6_HUMAN
PROTEIN-TYROSINE PHOSPHATASE 1C (EC 3.1.3.48)
227-261
512-580

(PTP-1C) (HEMATOPOIETIC

PPTNB_HUMAN
PROTEIN-TYROSINE PHOSPHATASE 2C (EC 3.1.3.48)
41-68
218-245

(PTP-2C) (PTP-1D)

PPTNC_HUMAN
PROTEIN-TYROSINE PHOSPHATASE G1 (EC 3.1.3.48)
618-645
695-722

(PTPG1).

PPTRR_HUMAN
PARATHYROID HORMONE/PARATHYROID HORMONE-RELATED
368-395

PEPTIDE

PPTX3_HUMAN
PENTAXIN-RELATED PROTEIN PTX3 PRECURSOR.
74-101

PPUR2_HUMAN
PHOSPHORIBOSYLAMINE-GLYCINE LIGASE (EC 6.3.4.13)
803-830

(GARS) (GLYCINAMIDE

PPUR6_HUMAN
MULTIFUNCTIONAL PROTEIN ADE2H1
391-418

(PHOSPHORIBOSYLAMINOIMIDAZOLE-

PPUR8_HUMAN
ADENYLOSUCCINATE LYASE (EC 4.3.2.2)
204-231

(ADENYLOSUCCINASE) (ASL).

PPYR5_HUMAN
URIDINE 5′-MONOPHOSPHATE SYNTHASE (UMP
120-150

SYNTHASE) (OROTATE

PPYRG_HUMAN
CTP SYNTHASE (EC 6.3.4.2) (UTP-AMMONIA LIGASE) (CTP
86-113
300-334

SYNTHETASE).

PPZP_HUMAN
PREGNANCY ZONE PROTEIN PRECURSOR.
315-354
990-1024
1162-1189
1405-1432

PRA74_HUMAN
TRANSCRIPTION FACTOR IIF, ALPHA SUBUNIT (TFIIF,
474-501

ALPHA SUBUNIT)

PRAB4_HUMAN
RAS-RELATED PROTEIN RAB-4.
38-65

PRAB6_HUMAN
RAS-RELATED PROTEIN RAB-6.
123-150

PRADI_HUMAN
RADIXIN.
308-335
414-463
510-537

PRB11_HUMAN
RAS-RELATED PROTEIN RAB-11 (24KG) (YL8).
151-178

PRBB3_HUMAN
RETINOBLASTOMA BINDING PROTEIN 3 (RBBP-3)
129-156
161-223

(PRB-BINDING PROTEIN E2F-1)

PRDP_HUMAN
RD PROTEIN.
9-53

PRENI_HUMAN
RENIN PRECURSOR, RENAL (EC 3.4.23.15)
136-163

(ANGIOTENSINOGENASE).

PREST_HUMAN
RESTIN (CYTOPLASMIC LINKER PROTEIN-170 ALPHA-2)
190-217
333-370
445-472
571-619
744-771
784-852
1023-1050
1088-1139
1157-1184

(CLIP-170).

1216-1306

PRFA1_HUMAN
REPLICATION PROTEIN A 70 KD DNA-BINDING SUBUNIT
208-235
425-455

(RP-A) (RF-A).

PRFP_HUMAN
TRANSFORMING PROTEIN (RFP) (RET FINGER PROTEIN).
183-217

PRH_HUMAN
BLOOD GROUP RH(D) POLYPEPTIDE
361-388

PRIB1_HUMAN
RIBOPHORIN I PRECURSOR.
81-108
496-530

PRIB2_HUMAN
RIBOPHORIN II PRECURSOR.
142-172
361-388

PRIR1_HUMAN
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M1 CHAIN
42-69
370-400

(EC 1.17.4.1)

PRL22_HUMAN
60S RIBOSOMAL PROTEIN L22 (EPSTEIN-BARR VIRUS SMALL
78-112

RNA ASSOCIATED

PRL26_HUMAN
60S RIBOSOMAL PROTEIN L26.
55-89
103-137

PRL9_HUMAN
60S ROBOSOMAL PROTEIN L9.
146-192

PRLA0_HUMAN
60S ACIDIC ROBOSOMAL PROTEIN P0 (L10E).
138-165

PRO5_HUMAN
52 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN
190-235
238-265

(SS-A)).

PRO6_HUMAN
60 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN
192-245

(SS-A)).

PROC_HUMAN
HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINS C1/C2
16-43

(HNRNP C1 AND HNRNP

PROL_HUMAN
HETEROGENEOUS RIBONUCLEOPROTEIN L (HRNPL).
501-528

PROU_HUMAN
HETEROGENEOUS RIBONUCLEOPROTEIN U.
630-657

PRPB1_HUMAN
DNA-DIRECTED RNA POLYMERASE II 215 KD POLYPEPTIDE
269-296
665-720
879-906
1314-1341
1371-1398

PRPB2_HUMAN
DNA-DIRECTED RNA POLYMERASE II 140 KD POLYPEPTIDE
626-667
1008-1035

PRPB3_HUMAN
DNA-DIRECTED RNA POLYMERASE II 33 KD POLYPEPTIDE
242-274

PRRXA_HUMAN
RETINOIC ACID RECEPTOR RXR-ALPHA.
318-352

PRRXB_HUMAN
RETINOIC ACID RECEPTOR RXR-BETA ISOFORM 1.
376-403

PRRXC_HUMAN
RETINOIC ACID RECEPTOR RXR-BETA ISOFORM 2
396-423

PRS12_HUMAN
40S RIBOSOMAL PROTEIN S12
60-87

PRS16_HUMAN
40S RIBOSOMAL PROTEIN S16
89-116

PRS25_HUMAN
40S RIBOSOMAL PROTEIN S25.
26-53

PRS27_HUMAN
40S RIBOSOMAL PROTEIN S27A.
14-41

PRS7_HUMAN
40S RIBOSOMAL PROTEIN S7 (S8)
73-100

PRS8_HUMAN
40S RIBOSOMAL PROTEIN S8
136-163

PRTC1_HUMAN
RAS-LIKE PROTEIN TC21.
123-150

PRU1A_HUMAN
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (U1 SNRNP A
13-47

PROTEIN)

PRU2B_HUMAN
U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B″
17-44

PRYNR_HUMAN
RYANODINE RECEPTOR, SKELETAL MUSCLE
154-188
495-522
866-893
2750-2777
2820-2847
3304-3331
3529-3556
3912-3939
4921-4948

PS10A_HUMAN
S-100 PROTEIN, ALPHA CHAIN
12-54

PS10B_HUMAN
S-100 PROTEIN, BETA CHAIN
14-56

PS10D_HUMAN
S-100D PROTEIN.
31-58

PSAHH_HUMAN
ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1) (S-ADENOSYL-L-
389-416

HOMOCYSTEINE

PSAT1_HUMAN
DNA-BINDING PROTEIN SATB1.
709-736

PSCCA_HUMAN
SQUAMOUS CELL CARCINOMA ANTIGEN (SCCA)
78-105

(PROTEIN T4-A)

PSCF_HUMAN
STEM CELL FACTOR PRECURSOR (SCF)
74-101

PSEM1_HUMAN
SEMENOGELIN I PROTEIN PRECURSOR (SGI) (CONTAINS:
64-98
176-226
288-329
334-368

SEMINAL BASIC

PSEM2_HUMAN
SEMENOGELIN II PRECURSOR (SGII).
71-98
183-226
304-355
405-439
539-575

PSET_HUMAN
SET PROTEIN.
38-65
154-181

PSG1_HUMAN
SECRETOGRANIN I PRECURSOR (CHROMOGRANIN B).
144-178

PSG2_HUMAN
SECRETOGRANIN II PRECURSOR (CHROMOGRANIN C).
254-281
290-317
534-561

PSIAL_HUMAN
BONE SIALOPROTEIN II PRECURSOR (BSP II).
84-113
155-193
256-283

PSN2L_HUMAN
POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L.
231-258
545-572

PSNOB_HUMAN
SK1-RELATED ONCOGENE SNON.
414-441

PSPCA_HUMAN
SPECTRIN ALPHA CHAIN.
193-220
570-621
655-712
1099-1126
1461-1502
1882-1901
1988-2022
2120-2154
2223-2250

2346-2373

PSPCB_HUMAN
SPECTRIN BETA CHAIN, ERYTHROCYTE.
150-177
316-350
486-520
648-675
987-1021
1027-1083
1287-1324
1347-1374
1834-1861

PSPRE_HUMAN
SEPIAPTERIN REDUCTASE (EC 1.1.1.153) (SPR).
90-124

PSRF_HUMAN
SERUM RESPONSE FACTOR (SRF).
77-104
480-507

PSRPR_HUMAN
SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT
76-110

(SR-ALPHA)

PSSR1_HUMAN
SOMATOSTATIN RECEPTOR TYPE 1.
289-316

PSTHM_HUMAN
STATHMIN (PHOSPHOPROTEIN P19) (ONCOPROTEIN P18)
47-74

(LEUKEMIA-ASSOCIATED

PSUIS_HUMAN
SUCRASE-ISOMALTASE, INTESTINAL (EC 3.2.1.48)/
1748-1775

(EC 3.2.1.10).

PSYB1_HUMAN
SYNAPTOBREVIN 1.
31-67

PSYD2_HUMAN
ASPARTYL-TRNA SYNTHETASE ALPHA-2 SUBUNIT
44-71

(EC 6.1.1.12) (ASPARTATE-

PSYEP_HUMAN
MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE
174-201
740-771

(CONTAINS: GLUTAMYL-TRN

PSYH_HUMAN
HISTIDYL-TRNA SYNTHETASE (EC 6.1.1.21) (HISTIDINE-
380-442
468-502

TRNA LIGASE).

PSYT1_HUMAN
SYNAPTOTAGMIN I (P65).
140-167
250-277

PSYTC_HUMAN
THREONYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.3)
497-524
658-685

(THREONINE-TRNA

PSYV_HUMAN
VALYL-TRNA SYNTHETASE (EC 6.1.1.9) (VALINE-TRNA
230-257
413-440

LIGASE) (VALRS).

PSYW_HUMAN
TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2)
93-127
196-223

(TRYPTOPHAN-TRNA LIGASE)

PT2EB_HUMAN
TRANSCRIPTION INITIATION FACTOR IIE-BETA CHAIN
34-68

(TFIIE-BETA).

PTAP4_HUMAN
TRANSCRIPTION FACTOR AP-4 (FRAGMENT).
169-196
245-272

PTAPB_HUMAN
TRANSCRIPTION FACTOR JUN-B
296-323

PTAPD_HUMAN
TRANSCRIPTION FACTOR JUN-D.
291-333

PTAU1_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN TAU
278-305

PTAU2_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN TAU, FETAL.
211-238

PTCO1_HUMAN
TRANSCOBALAMIN I PRECURSOR.
201-241
330-357

PTCP1_HUMAN
T-COMPLEX PROTEIN 1 (TCP-1).
316-343

PTDT_HUMAN
DNA NUCLEOTIDYLEXOTRANSFERASE (EC 2.7.7.31)
61-95

(TERMINAL ADDITION ENZYME)

PTEK_HUMAN
RECEPTOR TYROSINE-PROTEIN KINASE TEK PRECURSOR
644-678
969-996
1007-1036

(EC 2.7.1.112) (HPK-6).

PTF2B_HUMAN
TRANSCRIPTION INITIATION FACTOR 11B (FT11B).
135-162

PTFE3_HUMAN
TRANSCRIPTION FACTOR E3 (FRAGMENT).
43-70
122-149
178-226

PTFS2_HUMAN
TRANSCRIPTION ELONGATION FACTOR S-II.
29-56

PTF_HUMAN
TISSUE FACTOR PRECURSOR (TF) (COAGULATION FACTOR III).
148-175

PTGF1_HUMAN
TRANSFORMING GROWTH FACTOR BETA 1 PRECURSOR
148-185

(TGF-BETA 1).

PTGF2_HUMAN
TRANSFORMING GROWTH FACTOR BETA 2 PRECURSOR
243-270

(TGF-BETA 2) (GLIOBLASTO

PTGFA_HUMAN
TRANSFORMING GROWTH FACTOR ALPHA PRECURSOR
87-114

(TGF-ALPHA) (EGF-LIKE TGR

PTGLK_HUMAN
PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE K
258-285

(EC 2.3.2.13)

PTHBS_HUMAN
THROMBOSPONDIN PRECURSOR.
110-165
284-314

PTHIK_HUMAN
3-KETOACYL-COA THIOLASE PEROXISOMAL PRECURSOR
185-212

(EC 2.3.1.16) (BETA-

PTKNB_HUMAN
PROTACHYKININ BETA PRECURSOR (CONTAINS:
11-38

SUBSTANCE P, NEUROKININ A

PTLE1_HUMAN
TRANSDUCIN-LIKE ENHANCER PROTEIN 1.
626-653

PTLE2_HUMAN
TRANSDUCIN-LIKE ENHANCER PROTEIN 2.
94-125

PTLE4_HUMAN
TRANSDUCIN-LIKE ENHANCER PROTEIN 4 (FRAGMENT).
304-331

PTOPA_HUMAN
DNA TOPOISOMERASE II, ALPHA ISOZYME (EC 5.99.1.3).
19-46
503-532

PTOPB_HUMAN
DNA TOPOISOMERASE II, BETA ISOZYME (EC 5.99.1.3).
35-65
616-647

PTPM3_HUMAN
TROPOMYOSIN, FIBROBLAST ISOFORM TM3.
16-74
82-116

PTPMA_HUMAN
TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE.
16-43
47-74
82-116
147-174
191-237
243-277

PTPMB_HUMAN
TROPOMYOSIN BETA CHAIN, SKELETAL MUSCLE.
37-116
193-240

PTPMC_HUMAN
TROPOMYOSIN ALPHA CHAIN, CARDIAC MUSCLE
16-74
82-116
193-277

PTPMF_HUMAN
TROPOMYOSIN, FIBROBLAST AND EPITHELIAL MUSCLE-TYPE
37-116
210-240
243-270

(TM36) (TME1)

PTPMG_HUMAN
TROPOMYOSIN, FIBROBLAST NON-MUSCLE TYPE (TM30PL).
46-80
111-138
158-199
207-234

PTPM1_HUMAN
TROPOMYOSIN, CYTOSKELETAL TYPE (TM30NM).
46-80
111-138
172-199

PTPMS_HUMAN
TROPOMYOSIN ALPHA CHAIN, SMOOTH MUSCLE (FRAGMENT)
25-59
147-178

PTPP2_HUMAN
TRIPEPTIDYL-PEPTIDASE II (EC 3.4.14.10) (TPP II)
153-187
1004-1031
1160-1187

(TRIPEPTIDYL

PTPR_HUMAN
TPR ONCOGENE (FRAGMENT).
82-147

PTR36_HUMAN
TREB36 PROTEIN.
18-45
242-269

PTRFR_HUMAN
THYROTROPIN-RELEASING HORMONE RECEPTOR (TRH-R)
349-383

(THYROLIBERIN

PTRIC_HUMAN
TROPONIN I, CARDIAC MUSCLE.
36-63

PTRKA_HUMAN
HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR
66-93
117-148

PRECURSOR (EC 2.7.1.112)

PTRSR_HUMAN
TRANSFERRIN RECEPTOR PROTEIN (TR) (ANTIGEN CD71)
188-215
366-393

(T9)

PTSHR_HUMAN
THYROTROPIN RECEPTOR PRECURSOR (TSH-R).
87-117
420-447

PTTK_HUMAN
PROTEIN KINASE TKK (EC 2.7.1.-).
170-197
324-359
510-544
549-583

PTYK2_HUMAN
NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2
150-177

(EC 2.7.1.112).

PUBA1_HUMAN
UBIQUITIN-ACTIVATING ENZYME E1 (A1S9 PROTEIN).
448-475

PUBF1_HUMAN
NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING
227-254

FACTOR 1) (UBF-1).

PUDP0_HUMAN
UDP-GLUCURONOSYLTRANSFERASE PRECURSOR MICROSOMAL
227-254

(EC 2.4.1.17)

PUFO_HUMAN
RECEPTOR TYROSINE-PROTEIN KINASE UFO PRECURSOR
488-522

(EC 2.7.1.112)

PUSF1_HUMAN
UPSTREAM STIMULATORY FACTOR 1.
251-295

PVATC_HUMAN
VACUOLAR ATP SYNTHASE SUBUNIT C (EC 3.6.1.34)
47-74
117-147

(V-ATPASE C SUBUNIT).

PVIL1_HUMAN
VILLIN.
338-372
427-461
717-744

PVIME_HUMAN
VIMENTIN.
119-146
233-260

PVINC_HUMAN
VINCULIN.
108-135

PVPRT_HUMAN
RETROVIRUS-RELATED PROTEASE (EC 3.4.23.-).
95-134

PWEE1_HUMAN
WEE1-LIKE PROTEIN KINASE (EC 2.7.1.112).
354-388

PWT1_HUMAN
WILMS' TUMOR PROTEIN (WT33).
247-274

PXBP1_HUMAN
X BOX BINDING PROTEIN-1 (XBP-1) (TREB5 PROTEIN).
97-135

PXPAC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-A CELLS
180-211

(XERODERMA PIGMENTOSUM

PXPCC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-C CELLS
134-168
701-728

(XERODERMA PIGMENTOSUM

PXPDC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-D CELLS
264-291

(XERODERMA PIGMENTOSUM

PXPGC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-G CELLS
83-110
715-766
1047-1081

(XERODERMA PIGMENTOSUM

PXRCC_HUMAN
DNA-REPAIR PROTEIN XRCC1.
23-57

PZN10_HUMAN
ZINC FINGER PROTEIN 10 (ZINC FINGER PROTEIN KOX1)
29-56

(FRAGMENT).

PZN40_HUMAN
ZINC FINGER PROTEIN 40 (HUMAN IMMUNODEFICIENCY
17-62
307-334
1071-1098
1469-1500
2013-2057
2146-2180

VIRUS TYPE I ENHANCER-

PZN45_HUMAN
ZINC FINGER PROTEIN 45 (BRC1744) (FRAGMENT).
3-30
201-228

PZN46_HUMAN
ZINC FINGER PROTEIN 46 (ZINC FINGER PROTEIN KUP)
121-149

TABLE X

Search Results Summary for PCTLZIP, P1CTLZIP, and P2CTLZIP Motifs

PCTLZIP
P1CTLZIP
P2CTLZIP

LIBRARY FILE
LIBRARY FILE
LIBRARY FILE

PENV_FOAMV
481-496

PENV_BIVO6
434-450

PENV_BIVO6
525-542

PENV_HV1MA
438-453

PENV_BIV27
463-479

PENV_BIV27
554-571

PENV_HV1MF
183-198

PENV_FOAMV
481-496
864-880

PENV_FENV1
30-47
630-647

PENV_HV1RH
445-460

PENV_HV1KB
752-768

PENV_FIVPE
781-798

PENV_HV1SC
186-201

PENV_HV1MA
437-453

PENV_FIVSD
779-796

PENV_HV1Z2
123-138

PENV_HV1MF
183-198

PENV_FIVT2
780-797

PENV_HV1ZH
438-453

PENV_HV1RH
444-460

PENV_FLVC6
38-55
624-641

PENV_HV2BE
750-765

PENV_HV1S1
738-754

PENV_FLVGL
605-622

PENV_HV2D1
741-756

PENV_HV1SC
186-201

PENV_FLVLB
625-642

PENV_HV2G1
741-756

PENV_HV1Z2
123-138

PENV_FLVSA
602-619

PENV_HV2NZ
742-757

PENV_HV1Z3
117-133

PENV_FOAMV
710-727
957-974

PENV_HV2RO
751-766

PENV_HV1ZH
437-453

PENV_FSVGA
625-642

PENV_HV2SB
743-758

PENV_HV2BE
750-765

PENV_FSVGB
605-622

PENV_HV2ST
745-760

PENV_HV2D1
741-756

PENV_FSVSM
608-625

PENV_JSRV
104-119

PENV_HV2G1
741-756

PENV_HV1OY
123-140

PENV_MMTVB
618-633

PENV_HV2NZ
742-757

PENV_HV1Z2
410-427

PENV_MMTVG
618-633

PENV_HV2RO
751-766

PENV_HV1Z3
154-171

PENV_SIVMK
139-154

PENV_HV2SB
743-758

PENV_HV2CA
750-767

PENV_SIVML
139-154

PENV_HV2ST
745-760

PENV_MCFF
600-617

PHEMA_CVBLY
391-406

PENV_JSRV
104-119
541-557

PENV_MCFF3
601-618

PHEMA_CVBM
391-406

PENV_MCFF
397-413

PENV_MLVAV
630-647

PHEMA_CVBQ
391-406

PENV_MCFF3
397-413

PENV_MLVCB
625-642

PHEMA_CVHOC
391-406

PENV_MLVAV
427-443

PENV_MLVF5
639-656

PHEMA_CVMA5
402-417

PENV_MLVCB
422-438

PENV_MLVFF
639-656

PHEMA_CVMS
403-418

PENV_MLVHO
423-439

PENV_MLVFP
639-656

PHEMA_INBAA
295-310

PENV_MLVMO
426-442

PENV_MLVHO
626-643

PHEMA_INBBE
303-318

PENV_MLVRD
424-440

PENV_MLVKI
167-184

PHEMA_INBBO
293-308

PENV_MLVRK
424-440

PENV_MLVMO
629-646

PHEMA_INBEN
301-316

PENV_MMTVB
618-633

PENV_MLVRD
624-641

PHEMA_INBFU
286-301

PENV_MMTVG
618-633

PENV_MLVRK
624-641

PHEMA_INBGL
296-311

PENV_SFV1
864-880

PENV_MSVFB
170-187

PHEMA_INBHK
293-308

PENV_SFV3L
861-877

PENV_RMCFV
603-620

PHEMA_INBIB
288-303

PENV_SIVGB
93-109

PENV_SFV1
710-727
957-974

PHEMA_INBID
299-314

PENV_SIVMK
139-154
802-818

PENV_SFV3L
707-724
954-971

PHEMA_INBLE
302-317

PENV_SIVML
139-154
801-817

PENV_SIVM1
766-783

PHEMA_INBMD
292-307

PENV_SIVS4
806-822

PENV_SIVMK
765-782

PHEMA_INBME
296-311

PENV_SIVSP
810-826

PENV_SIVML
764-781

PHEMA_INBNA
288-303

PHEMA_CDVO
36-52

PENV_SIVS4
769-786

PHEMA_INBOR
301-316

PHEMA_CVBLY
391-406

PENV_SIVSP
773-790

PHEMA_INBSI
301-316

PHEMA_CVBM
391-406

PENV_SMRVH
536-553

PHEMA_INBSJ
296-313

PHEMA_CVBQ
391-406

PENV_SMSAV
42-59

PHEMA_INBUS
294-309

PHEMA_CVHOC
391-406

PHEMA_CDVO
36-53
200-217

PHEMA_INBVI
296-311

PHEMA_CVMA5
402-417

PHEMA_CVBLY
391-408

PHEMA_INBVK
303-318

PHEMA_CVMS
403-418

PHEMA_CVBM
391-408

PHEMA_INBYB
286-301

PHEMA_IAAIC
237-253

PHEMA_CVBQ
391-408

PHEMA_MUMPM
133-148

PHEMA_IABAN
221-237

PHEMA_CVHOC
391-408

PHEMA_MUMPR
133-148

PHEMA_IABUD
234-250

PHEMA_IAAIC
322-339

PHEMA_MUMPS
133-148

PHEMA_IACKA
234-250

PHEMA_IABAN
306-323

PHEMA_PI1HW
345-360

PHEMA_IACKG
231-247

PHEMA_IABUD
320-337

PHEMA_PI2H
65-80

PHEMA_IACKV
230-246

PHEMA_IACKA
320-337

PHEMA_PI2HT
65-80

PHEMA_IADA1
234-250

PHEMA_IACKG
316-333

PHEMA_RINDK
368-383

PHEMA_IADA3
237-253

PHEMA_IACKP
302-319

PHEMA_SV5
7-94

PHEMA_IADCZ
234-250

PHEMA_IACKQ
302-319

PHEMA_SV5CM
7-94

PHEMA_IADH1
221-237

PHEMA_IACKS
319-336

PHEMA_SV5CP
7-94

PHEMA_IADH2
221-237

PHEMA_IACKV
315-332

PHEMA_SV5LN
7-94

PHEMA_IADH3
221-237

PHEMA_IADA1
320-337

PVENV_DHVI1
42-57

PHEMA_IADH4
221-237

PHEMA_IADA3
322-339

PVFP7_CAPVK
89-104

PHEMA_IADH5
221-237

PHEMA_IADCZ
320-337

PVFUS_VACC6
72-87

PHEMA_IADH6
221-237

PHEMA_IADH1
306-323

PVG01_BPP22
242-257

PHEMA_IADH7
221-237

PHEMA_IADH2
306-323

PVG01_HSVEB
169-184

PHEMA_IADM2
237-253

PHEMA_IADH3
306-323

PVG01_HSVI1
210-225
317-332
PHEMA_IADNZ
234-250

PHEMA_IADH4
306-323

PVG06_BFT4
184-199

PHEMA_IAEN6
221-237

PHEMA_IADH6
306-323

PVG07_BPT4
885-900

PHEMA_IAEN7
237-253

PHEMA_IADH7
306-323

PVG08_HSVI1
134-149

PHEMA_IAFPR
230-246

PHEMA_IADM2
322-339

PVG10_BPPH2
183-198

PHEMA_IAHAL
236-252

PHEMA_IADNZ
320-337

PVG10_BPPZA
183-198

PHEMA_IAHAR
235-251

PHEMA_IADU3
322-339

PVG10_HSVSA
109-124

PHEMA_IAHC6
230-246

PHEMA_IAEN6
306-323

PVG16_BPP1
81-96

PHEMA_IAHC7
230-246

PHEMA_IAEN7
322-339

PVG18_BPT4
468-483

PHEMA_IAHCD
230-246

PHEMA_IAFPR
315-332

PVG25_BPT4
97-112

PHEMA_IAHDE
230-246

PHEMA_IAGRE
320-337

PVG29_HSVI1
20-35

PHEMA_IAHFO
236-252

PHEMA_IAGU2
320-337

PVG30_BPPH8
11-94

PHEMA_IAHK6
236-252

PHEMA_IAGUA
319-336

PVG36_BPOX2
22-37

PHEMA_IAHK7
236-252

PHEMA_IAHAL
321-338

PVG36_HSVSA
108-123

PHEMA_IAHLE
230-246

PHEMA_IAHC6
315-332

PVG37_BPT2
1253-1268

PHEMA_IAHLO
230-246

PHEMA_IAHC7
315-332

PVG37_HSVI1
284-299

PHEMA_IAHMI
236-252

PHEMA_IAHCD
315-332

PVG55_HSVI1
22-37
143-158
PHEMA_IAHNM
236-252

PHEMA_IAHDE
315-332

PVG56_HSVI1
268-283

PHEMA_IAHRO
236-252

PHEMA_IAHFO
321-338

PVG56_HSVI1
102-117

PHEMA_IAHSA
236-252

PHEMA_IAHK6
321-338

PVG59_HSVI1
267-282

PHEMA_IAHSP
230-246

PHEMA_IAHK7
321-338

PVG65_HSVI1
518-533

PHEMA_IAHSW
230-246

PHEMA_IAHLE
315-332

PVG9_BPPH2
234-249

PHEMA_IAHTE
236-252

PHEMA_IAHLO
315-332

PVG9_BPPZA
234-249

PHEMA_IAHTO
236-252

PHEMA_IAHMI
321-338

PVG9_BPV1R
57-72

PHEMA_IAHUR
236-252

PHEMA_IAHNM
321-338

PVGF_BPPHX
234-249

PHEMA_IAKIE
235-251

PHEMA_IAHNN
315-332

PVGL2_CVBF
264-279

PHEMA_IALEN
235-251

PHEMA_IAHPR
315-332

PVGL2_CFBL9
264-279

PHEMA_IAMAA
233-249

PHEMA_IAHRO
321-338

PVGL2_CVBLY
264-279

PHEMA_IAMAB
238-254

PHEMA_IAHSA
321-338

PVGL2_CVBM
264-279

PHEMA_IAMAO
237-253

PHEMA_IAHSP
315-332

PVGL2_CVBQ
264-279

PHEMA_IAME1
237-253

PHEMA_IAHSW
315-332

PVGL2_CVBV
264-279

PHEMA_IAME2
237-253

PHEMA_IAHTE
321-338

PVGL2_CVPFS
442-457

PHEMA_IAME6
221-237

PHEMA_IAHTO
321-338

PVGL2_CVPPU
440-455
504-519
PHEMA_IAMIN
85-101
231-247

PHEMA_IAHUR
321-338

PVGL2_CVPR8
218-233

PHEMA_IANT6
237-253

PHEMA_IAJAP
317-334

PVGL2_CVPRM
218-233

PHEMA_IAQU7
221-237

PHEMA_IAMAA
319-336

PVGL2_IBV6
1056-1071

PHEMA_IARUD
234-250

PHEMA_IAMAB
324-341

PVGL2_IBVB
1055-1070

PHEMA_IASE2
234-250

PHEMA_IAMAO
322-339

PVGL2_IBVD2
1056-1071

PHEMA_IASH2
234-250

PHEMA_IAME1
322-339

PVGL2_IBVK
1055-1070

PHEMA_IASTA
230-246

PHEMA_IAME2
322-339

PVGL2_IBVM
1055-1070

PHEMA_IATAI
235-251

PHEMA_IAME6
306-323

PVGLB_HSVSA
701-716

PHEMA_IATKM
234-250

PHEMA_IAMIN
316-333

PVGLB_PRVIF
203-216

PHEMA_IATKO
233-249

PHEMA_IANT6
322-339

PVGLC_HSVBC
475-490

PHEMA_IATKR
230-246

PHEMA_IAPIL
320-337

PVGLC_HSVE4
444-459

PHEMA_IATKW
229-245

PHEMA_IAQU7
306-323

PVGLC_HSVEB
427-442

PHEMA_IAUDO
237-253

PHEMA_IARUD
320-337

PVGLC_PRVIF
446-461

PHEMA_IAUSS
235-251

PHEMA_IASE2
320-337

PVGLD_HSV11
79-94

PHEMA_IAVI7
238-254

PHEMA_IASH2
321-338

PVGLD_HSV2
79-94

PHEMA_IAXIA
235-251

PHEMA_IASTA
315-332

PVGLF_BRSVA
265-280

PHEMA_IAZCO
237-253

PHEMA_IATKM
320-337

PVGLF_BRSVC
265-280

PHEMA_IAZH2
221-237

PHEMA_IAUDO
322-339
380-397

PVGLF_BRSVR
265-280

PHEMA_IAZH3
221-237

PHEMA_IAVI7
323-340

PVGLF_HRSV1
265-280

PHEMA_IAZUK
237-253

PHEMA_IAZCO
322-339

PVGLF_HRSVA
265-280

PHEMA_INBAA
115-131
295-310

PHEMA_IAZH2
306-323

PVGLF_HRSVL
265-280

PHEMA_INBBE
123-139
303-318

PHEMA_IAZH3
306-323

PVGLF_HRSVR
265-280

PHEMA_INBBO
116-132
293-308

PHEMA_IAZUK
322-339

PVGLF_MUMPS
5-94

PHEMA_INBEN
123-139
301-316

PHEMA_MUMPM
101-118

PVGLI_VZVD
278-293

PHEMA_INBFU
108-124
286-301

PHEMA_MUMPR
101-118

PVGLM_HANTB
900-915

PHEMA_INBGL
119-135
296-311

PHEMA_MPMPS
101-118

PVGLM_PTPV
743-758

PHEMA_INBHK
116-132
293-308

PHEMA_NDVA
93-110

PVGLM_SEOUR
901-916

PHEMA_INBIB
108-124
288-303

PHEMA_NDVB
93-110

PVGLM_SEOUS
900-915

PHEMA_INBID
120-136
299-314

PHEMA_NDVD
93-110

PVGLY_LASSG
426-441

PHEMA_INBLE
123-139
302-317

PHEMA_NDVH
93-110

PVGLY_LASSJ
427-442

PHEMA_INBMD
113-129
292-307

PHEMA_NDVI
93-110

PVGLY_MOPEI
425-440

PHEMA_INBME
116-132
296-311

PHEMA_NDVM
93-110

PVM3_REOVD
521-536

PHEMA_INBNA
108-124
288-303

PHEMA_NDVQ
93-110

PVMSA_HPBGS
380-395

PHEMA_INBOR
123-139
301-316

PHEMA_NDVTG
93-110

PVMSA_HPBV9
187-202

PHEMA_INBSI
123-139
301-316

PHEMA_NDVU
93-110

PVMSA_WHV1
378-393

PHEMA_INBSJ
119-135
298-313

PHEMA_PHODV
36-53

PVMSA_WHV59
383-398

PHEMA_INBUS
116-132
294-309

PHEMA_PI1HW
486-503

PVMSA_WHV7
383-398

PHEMA_INBVI
116-132
296-311

PHEMA_PI3B
111-128

PVMSA_WHV8
383-398

PHEMA_INBVK
123-139
303-318

PHEMA_PI3H4
111-128

PVMSA_WHV8I
383-398

PHEMA_INBYB
108-124
286-301

PHEMA_PI3HA
111-128

PVMSA_WHVW6
234-249

PHEMA_MUMPM
133-148

PHEMA_PI3HT
111-128

PVMT2_IAANN
25-40

PHEMA_MUMPR
133-148

PHEMA_PI3HU
111-128

PVMT2_IABAN
25-40

PHEMA_MUMPS
133-148

PHEMA_PI3HV
111-128

PVMT2_IAFOW
25-40

PHEMA_PI1HW
345-360

PHEMA_PI3HW
111-128

PVMT2_IAFPR
25-40

PHEMA_PI2H
65-81

PHEMA_PI3HX
111-128

PVMT2_IAFPW
25-40

PHEMA_PI2HT
65-81

PHEMA_PI4HA
50-67

PVMT2_IALE1
25-40

PHEMA_PI3B
324-340

PHEMA_SV41
85-102

PVMT2_IALE2
25-40

PHEMA_PI3H4
324-340

PHEMA_SV5
84-101

PVMT2_IAMAN
25-40

PHEMA_PI3HA
324-340

PHEMA_SV5CM
84-101

PVMT2_IAPUE
25-40

PHEMA_PI3HT
324-340

PHEMA_SV5CP
84-101

PVMT2_IASIN
25-40

PHEMA_PI3HU
324-340

PHEMA_SV5LN
84-101

PVMT2_IAUDO
25-40

PHEMA_PI3HV
324-340

PVFO5_VACCC
280-297

PVMT2_IAWIL
25-40

PHEMA_PI3HW
324-340

PVFO5_VACCP
280-297

PVMT9_MYXVL
226-241

PHEMA_PI3HX
324-340

PVFO5_VACCV
281-298

PHEMA_RINDK
368-383

PVFO9_VACCC
176-193

PHEMA_SV5
7-94

PVFO9_VACCV
176-193

PHEMA_SV5CM
7-94

PVG27_HSVSA
209-226

PHEMA_SV5CP
7-94

PVG28_HSVI1
173-190

PHEMA_SV5LN
7-94

PVG39_HSVI1
648-665

PVENV_DHVI1
42-57

PVG43_HSVI1
109-126
521-538

PVENV_EAV
25-41

PVG67_HSVI1
171-188

PVFP2_FOWPV
88-104

PVG72_HSVI1
1252-1269

PVFP7_CAPVK
89-104

PVGF1_IBVB
3073-3090

PVFUS_VACC6
72-87

PVGL2_IBV6
1094-1111

PVG01_HSVEB
169-184

PVGLB_HSVE1
736-753

PVG01_HSVI1
209-225
317-332

PVGLB_HSVE4
675-692

PVG08_HSVI1
134-149

PVGLB_HSVEA
736-753

PVG10_HSVSA
109-124

PVGLB_HSVEB
736-753

PVG11_HSVI1
103-119

PVGLB_HSVEL
736-753

PVG12_HSVI1
270-286

PVGLB_ILTV6
597-614

PVG1_SPV1R
76-92

PVGLB_ILTV5
607-624

PVG29_HSVI1
20-35

PVGLB_ILTVT
607-624

PVG86_BPOX2
22-37

PVGLC_PRVIF
180-197

PVG36_HSVSA
108-123

PVGLE_VZVD
469-486

PVG37_HSVI1
284-299

PVGLF_SV5
401-418

PVG41_HSVI1
244-260

PVGLH_HCMVA
365-382

PVG46_HSVI1
1244-1260

PVGLH_HCMVT
364-381

PVG55_HSVI1
22-37
143-158

PVGLH_HSV11
245-262
803-820

PVG56_HSVI1
268-283

PVGLH_HSV1E
245-262
803-820

PVG58_HSVI1
101-117

PVGLI_HSV11
43-60

PVG58_HSVSA
130-146
330-346

PVGLM_BUNL7
81-98

PVG59_HSVI1
267-282

PVGLM_BUNSH
81-98

PVG65_HSVI1
362-378
518-533

PVGLM_PUUMH
712-729

PVG71_HSVSA
89-105

PVGLM_PUUMS
712-729

PVG9_BPPH2
234-249

PVGLM_RVFV
344-361

PVG9_BPPZA
234-249

PVGLM_RVFVZ
344-361

PVG9_SPV1R
57-72

PVGLY_LASSG
12-94

PVGF1_IBVB
2210-2226

PVGLY_LASSJ
12-94

PVGL2_CVBF
123-139
174-190
264-279

PVGLY_LYCVA
12-94

PVGL2_CVBL9
123-139
174-190
264-279

PVGLY_LYCVW
12-94

PVGL2_CVBLY
123-139
174-190
264-279

PVGLY_MOPEI
12-94

PVGL2_CVBM
123-139
174-190
264-279

PVM1_REOVD
280-297

PVGL2_CVBQ
31-47
123-139
174-190
264-279
PVM1_REOVL
280-297

PVGL2_CVBV
123-139
174-190
264-279

PVMAT_CDVO
148-165

PVGL2_CVM4
95-111
1267-1283

PVMAT_MEASI
87-104

PVGL2_CVMA5
95-111
1216-1231

PVMP_CAMVC
147-164

PVGL2_CVMJH
95-111
1126-1142

PVMP_CAMVD
147-164

PVGL2_CVPFS
442-457
800-818
1274-1290

PVMP_CAMVE
147-164

PVGL2_CVPPU
440-455
504-519
798-814
1272-1288
PVMP_CAMVN
147-164

PVGL2_CVPR8
218-233
576-592
1050-1066

PVMP_CAMVS
147-164

PVGL2_CVPRM
218-233
576-592
1050-1066

PVMP_CAMVW
147-164

PVGL2_FIPV
803-819
1277-1293

PVMSA_HPBVO
11-94

PVGL2_IBV6
1056-1071

PVMSA_HPBV2
185-202

PVGL2_IBVB
1055-1070

PVMSA_HPBV4
185-202

PVGL2_IBVD2
1056-1071

PVMSA_HPBVA
174-191

PVGL2_IBVK
1055-1070

PVMSA_HPBVD
11-94

PVGL2_IBVM
1055-1070

PVMSA_HPBVJ
174-191

PVGLB_HSVSA
701-716

PVMSA_HPBVL
174-191

PVGLB_PRVIF
203-218

PVMSA_HPBVN
11-94

PVGLB_VZVD
522-538

PVMSA_HPBVO
174-191

PVGLC_HSVBC
475-490

PVMSA_HPBVP
185-202

PVGLC_HSVE4
444-459

PVMSA_HPBVR
185-202

PVGLC_HSVEB
427-442

PVMSA_HPBVS
11-94

PVGLC_PRVIF
446-461

PVMSA_HPBVW
174-191

PVGLC_VZVD
150-166

PVMSA_HPBVY
174-191

PVGLC_VZVS
150-166

PVMSA_HPBVZ
174-191

PVGLD_HSV11
79-94

PVMT2_IAANN
25-42

PVGLD_HSV2
79-94

PVMT2_IABAN
25-42

PVGLE_PRVRI
3-94

PVMT2_IAFOW
25-42

PVGLF_BRSVA
205-221
265-280

PVMT2_IAFPR
25-42

PVGLF_BRSVC
205-221
265-280

PVMT2_IAFPW
25-42

PVGLF_BRSVR
205-221
265-280

PVMT2_IALE1
25-42

PVGLF_COVO
398-414

PVMT2_IALE2
25-42

PVGLF_HRSV1
205-221
265-280

PVMT2_IAMAN
25-42

PVGLF_HRSVA
205-221
265-280

PVMT2_IAPUE
25-42

PVGLF_HRSVL
205-221
265-280

PVMT2_IASIN
25-42

PVGLF_HRSVR
205-221
265-280

PVMT2_IAUDO
25-42

PVGLF_MEASE
286-302

PVMT2_IAWIL
25-42

PVGLF_MEASI
289-305

PVGLF_MEASY
286-302

PVGLF_MUMPM
276-292

PVGLF_MUMPR
276-292

PVGLF_MUMPS
5-94
276-292

PVGLF_NDVA
273-289

PVGLF_NDVB
273-289

PVGLF_NDVM
273-289

PVGLF_NDVT
273-289

PVGLF_NDVTG
273-289

PVGLF_NDVU
273-289

PVGLF_PHODV
269-285
367-383

PVGLF_RINDK
282-298

PVGLF_RINDL
282-298

PVGLF_TRTV
175-191

PVGLI_VZVD
278-293

PVGLM_HANTB
355-371
900-915

PVGLM_HANTH
499-515

PVGLM_HANTL
499-515

PVGLM_HANTV
499-515

PVGLM_PTPV
743-758

PVGLM_PUUMH
509-525

PVGLM_PUUMS
509-525

PVGLM_SEOUR
355-371
901-916

PVGLM_SEOUS
355-371
900-915

PVGLM_UUK
826-842

PVGLP_BEV
869-885

PVGLY_LASSG
12-94
426-441

PVGLY_LASSJ
12-94
427-442

PVGLY_LYCVA
12-94

PVGLY_LYCVW
12-94

PVGLY_MOPEI
12-94
425-440

PVGLY_PIARV
12-94

PVGNM_CPMV
1021-1037

PVM3_REOVD
521-536

PVMAT_MUMPS
191-207

PVMAT_NDVA
135-151

PVMAT_NDVB
135-151

PVMAT_PI2HT
189-205

PVMAT_SV41
189-205

PVMAT_SV5
98-114
132-148

PVMP_CAMVC
118-134

PVMP_CAMVD
118-134

PVMP_CAMVE
118-134

PVMP_CAMVN
118-134

PVMP_CAMVS
118-134

PVMP_CAMVW
118-134

PVMP_FMVD
115-131

PVMSA_HPBGS
380-395

PVMSA_HPBV9
187-202

PVMSA_WHV1
378-393

PVMSA_WHV59
383-398

PVMSA_WHV7
383-398

PVMSA_WHV8
383-398

PVMSA_WHV8I
383-398

PVMSA_WHVW6
234-249

PVMT2_IAANN
25-40

PVMT2_IABAN
25-40

PVMT2_IAFOW
25-40

PVMT2_IAFPR
25-40

PVMT2_IAFPW
25-40

PVMT2_IALE1
25-40

PVMT2_IALE2
25-40

PVMT2_IAMAN
25-40

PVMT2_IAPUE
25-40

PVMT2_IASIN
25-40

PVMT2_IAUDO
25-40

PVMT2_IAWIL
25-40

PVMT9_MYXVL
226-241

TABLE XI

Search Results Summary for P3CTLZIP, P4CTLZIP, P5CTLZIP, and P6CTLZIP Motifs

P3CTLZIP
P4CTLZIP
P5CTLZIP
P6CTLZIP

LIBRARY FILE
LIBRARY FILE
LIBRARY FILE
LIBRARY FILE

PENV_BIV27
147-165

PENV1_FRSFV
380-399

PENV1_FRSFV
380-400

PENV_BIVO6
47-68
525-546

PENV_CAEVC
810-828

PENV_AVISU
98-117

PENV2_FRSFV
380-400

PENV_BIV27
47-68
147-168
564-575

PENV_CAEVG
808-826

PENV_BIV27
147-166

PENV_BAEVM
170-190

PENV_FENV1
225-246
630-651

PENV_HV2BE
750-768

PENV_HV1ZH
123-142

PENV_FIVPE
781-801

PENV_FLVC6
624-645

PENV_HV2D1
741-759

PENV_HV2D2
9-29

PENV_FIVSD
779-799

PENV_FLVGL
447-468
605-626

PENV_HV2G1
741-759

PENV_HV2SB
778-797

PENV_FIVT2
780-800

PENV_FLVLB
467-488
625-646

PENV_HV2NZ
742-760

PENV_JSRV
541-560

PENV_FLVGL
9-29

PENV_FLVSA
444-465
602-623

PENV_HV2RO
751-769

PENV_RSVP
533-552

PENV_FOAMV
255-275
924-944
PENV_FOAMV
153-174
957-978

PENV_HV2SB
743-761

PHEMA_VACCC
173-192

PENV_FSVGA
9-29

PENV_FSVGA
467-488
625-646

PENV_HV2ST
745-763

PHEMA_VACCI
173-192

PENV_HV1C4
428-448

PENV_FSVGB
447-468
605-626

PENV_JSRV
376-394

PHEMA_VACCT
173-192

PENV_HV2CA
750-770

PENV_FSVSM
450-471
608-629

PHEMA_PI2H
118-136

PHEMA_VACCV
173-192

PENV_MLVF5
400-420

PENV_FSVST
467-488

PHEMA_PI2HT
118-136

PVENV_BEV
62-81

PENV_MMTVB
643-663

PENV_GALV
52-73
519-540

PHEMA_SV41
55-73

PVENV_MCV1
61-80

PENV_MMTVG
643-663

PENV_HV2BE
750-771

PVENV_THOGV
473-491

PVENV_MCV2
61-80

PENV_OMVVS
75-95

PENV_HV2G1
741-762

PVG16_BPP22
83-101

PVFUS_ORFNZ
29-48

PENV_RSVP
42-62

PENV_HV2NZ
742-763

PVG24_BPT4
115-133

PVGO1_HSVEB
169-188

PENV_SFV1
924-944

PENV_HV2RO
751-772

PVG36_HSVSA
344-362

PVGO1_VACCC
376-395

PENV_SFV3L
921-941

PENV_HV2ST
745-766

PVG40_HSVI1
14-32

PVGO1_VACCV
315-334

PENV_SIVM1
766-786

PENV_MCFF
600-621

PVG50_HSVSA
5-94

PVGO1_VARV
376-395

PENV_SIVMK
765-785

PENV_MCFF3
601-622

PVG51_BPT4
63-81

PVGO6_BPT4
627-646

PENV_SIVML
764-784

PENV_MLVAV
630-651

PVG51_HSVI1
84-102

PVG10_HSVI1
35-54

PENV_SIVS4
769-789

PENV_MLVCB
625-646

PVG65_HSVI1
155-173

PVG11_HSVI1
103-122
150-169
PENV_SIVSP
773-793

PENV_MLVF5
639-660

PVGF1_IBVB
2788-2806
3374-3392
PVG1_BPPH2
31-50

PHEMA_CDVO
493-513

PENV_MLVFF
639-660

PVGL2_CVH22
1053-1071

PVG1_SPV1R
659-678

PHEMA_CVBLY
391-411

PENV_MLVFP
639-660

PVGL2_IBV6
1056-1074

PVG20_BPT4
231-250

PHEMA_CVBM
391-411

PENV_MLVHO
626-647

PVGL2_IBVB
1055-1073

PVG32_VZVD
90-109

PHEMA_CVBQ
391-411

PENV_MLVKI
167-188

PVGL2_IBVD2
1056-1074

PVG36_BPK3
132-151

PHEMA_CVHOC
391-411

PENV_MLVMO
629-650

PVGL2_IBVK
1055-1073

PVG37_BPT2
19-38
629-648
PHEMA_CVMA5
402-422

PENV_MLVRD
624-645

PVGL2_IBVM
1055-1073

PVG37_BPT4
19-38
625-644
PHEMA_IACKG
81-101

PENV_MLVRK
624-645

PVGLB_HSVB1
560-578
689-707
PVG39_HSVI1
1038-1057

PHEMA_IADMA
81-101

PENV_MSVFB
170-191

PVGLB_HSVBC
692-710

PVG41_HSVI1
62-81

PHEMA_MUMPM
397-417

PENV_RMCFV
603-624

PVGLB_HSVSA
584-602

PVG43_BPPF3
380-399

PHEMA_MUMPR
397-417

PENV_SFV1
957-978

PVGLB_ILTV6
740-758

PVG46_BPPF1
337-356

PHEMA_MUMPS
397-417

PENV_SFV3L
157-178
954-975

PVGLB_ILTVS
750-768

PVG59_HSVI1
142-161

PHEMA_PHODV
493-513

PENV_SIVA1
437-458

PVGLB_ILTVT
750-768

PVG61_HSVI1
117-136

PHEMA_PI1HW
322-342

PENV_SIVAG
442-463

PVGLC_VZVD
431-449

PVG67_HSVI1
318-337
1072-1091
PHEMA_PI2H
13-33

PENV_SIVAI
421-442

PVGLC_VZVS
431-449

PVGF1_IBVB
1587-1606
2108-2127
PHEMA_PI2HT
13-33

PENV_SIVAT
435-456

PVGLF_PI3H4
2-94

PVGL2_CVBF
991-1010

PHEMA_RINDL
497-517

PENV_SMSAV
42-63

PVGLH_HSV6G
314-332

PVGL2_CVBL9
991-1010

PHEMA_SEND5
322-342

PHEMA_CVMA5
402-423

PVGLH_HSVE4
814-832

PVGL2_CVBLY
991-1010

PHEMA_SENDF
322-342

PHEMA_IADE1
266-287

PVGLH_HSVEB
807-825

PVGL2_CVBM
991-1010

PHEMA_SENDH
322-342

PHEMA_MUMPM
225-246

PVGLI_HSV11
5-94

PVGL2_CVBQ
991-1010

PHEMA_SENDJ
322-342

PHEMA_MUMPR
225-246

PVGNM_BPMV
678-696

PVGL2_CVBV
991-1010

PHEMA_SENDZ
322-342

PHEMA_MUMPS
225-246

PVMO1_VACCC
134-152
177-195
PVGL2_CVH22
768-787
1115-1134
PVENV_LELV
27-47
148-168
PHEMA_PHODV
213-234

PVMO1_VACCV
83-101
126-144
PVGL2_CVM4
999-1018

PVENV_THOGV
356-376

PHEMA_PI2H
13-34

PVM1_REOVD
227-245

PVGL2_CVMA5
947-966

PVGO1_VACCC
298-318

PHEMA_PI2HT
13-34

PVM1_REOVL
227-245

PVGL2_CVMJH
858-877

PVGO1_VACCV
237-257

PHEMA_SV5
7-28
379-400

PVMAT_HRSVA
44-62

PVGL2_CVPFS
64-83
1038-1057
PVGO1_VARV
298-318

PHEMA_SV5CM
7-28
379-400

PVMAT_NDVA
190-208

PVGL2_CVPPU
64-83
1036-1055
PVGO6_VACCC
31-51

PHEMA_SV5CP
7-28
379-400

PVMAT_NDVB
190-208

PVGL2_CVPR8
814-833

PVGO6_VARV
31-51

PHEMA_SV5LN
7-28
379-400

PVMP_CAMVC
183-201

PVGL2_CVPRM
814-833

PVGO9_BPPF1
25-45

PVGO1_HSVEB
169-190

PVMP_CAMVD
183-201

PVGL2_FIPV
1041-1060

PVG12_HSVI1
151-171

PVGO1_HSVI1
589-610

PVMP_CAMVE
183-201

PVGL2_IBV6
588-607
771-790
PVG22_HSVI1
300-320

PVG23_HSVI1
314-335

PVMP_CAMVN
183-201

PVGL2_IBVB
587-606
770-789
PVG39_HSVI1
648-668
970-990
PVG37_BPOX2
65-86

PVMP_CAMVS
183-201

PVGL2_IBVD2
588-607
771-790
PVG51_HSVI1
29-49

PVG43_HSVI1
157-178

PVMP_CAMVW
183-201

PVGL2_IBVK
587-606
770-789
PVG63_HSVI1
336-356

PVG55_HSVI1
288-309

PVMP_FMVD
180-198

PVGL2_IBVM
587-606
770-789
PVG65_HSVI1
117-137

PVG55_HSVSA
85-106

PVGLB_HCMVA
706-725

PVG74_HSVSA
124-144

PVG56_HSVI1
1155-1176

PVGLB_HCMVT
707-726

PVGL2_IBV6
328-348

PVG58_HSVSA
266-287

PVGLB_HSV6U
117-136

PVGL2_IBVB
327-347

PVG60_HSVI1
30-51

PVGLB_ILTV6
256-275

PVGL2_IBVD2
328-348

PVG83_HSVI1
238-259

PVGLB_ILTVS
266-285

PVGL2_IBVD3
328-348

PVGF1_IBVB
1856-1877

PVGLB_ILTVT
266-285

PVGL2_IBVK
327-347

PVGH3_HCMVA
157-178

PVGLC_HSV11
3-94
467-486
PVGL2_IBVM
327-347
378-398
PVGL2_CVBF
1259-1280

PVGLC_HSV1K
3-94
467-486
PVGL2_IBVU2
310-330

PVGL2_CVBL9
1259-1280

PVGLC_HSVBC
475-494

PVGLB_EBV
732-752

PVGL2_CVBLY
1259-1280

PVGLG_CHAV
436-455

PVGLB_HCMVA
750-770

PVGL2_CVBM
1259-1280

PVGLG_RABVH
372-391

PVGLB_HCMVT
751-771

PVGL2_CVBQ
1259-1280

PVGLI_HSVEB
44-63

PVGLB_HSV23
79-99

PVGL2_CVBV
1259-1280

PVGLI_VZVD
278-297

PVGLB_HSV2H
79-99

PVGL2_CVM4
1317-1338

PVGLM_BUNGE
117-136

PVGLB_HSV2S
65-85

PVGL2_CVMA5
1265-1286

PVGLM_PHV
152-171

PVGLB_HSV6U
72-92

PVGL2_CVMJH
1176-1197

PVGLM_PTPV
997-1016

PVGLB_HSVB2
279-299

PVGLB_HSV11
83-104

PVGLM_PUUMH
155-174

PVGLB_HSVSA
63-83

PVGLB_HSV1F
82-103

PVGLM_PUUMS
155-174

PVGLB_MCMVS
738-758

PVGLB_HSV1K
82-103

PVGLM_RVFV
830-849

PVGLF_PI3H4
283-303

PVGLB_HSV1P
83-104

PVGLM_RVFVZ
830-849

PVGLG_RABVE
454-474

PVGLB_MCMVS
135-156

PVGLM_UUK
655-674

PVGLG_RABVH
454-474

PVGLC_PRVIF
446-467

PVGLY_LYCVW
89-108

PVGLG_RABVP
454-474

PVGLF_CDVO
336-357

PVGNB_CPMV
1165-1184

PVGLG_RABVS
454-474

PVGLF_MEASE
224-245

PVM3_REOVD
521-540

PVGLG_RABVT
454-474

PVGLF_MEASI
227-248

PVME1_CVBM
171-190

PVGLH_MCMVS
670-690

PVGLF_MEASY
224-245

PVME1_CVH22
136-155

PVGLM_BUNL7
1325-1345

PVGLF_MUMPM
446-467

PVME1_CVPFS
174-193

PVGLM_BUNSH
1325-1345

PVGLF_MUMPR
446-467

PVME1_CVPPU
174-193

PVGLM_BUNYW
996-1016

PVGLF_MUMPS
446-467

PVME1_CVPRM
174-193

PVGLM_HANTB
999-1019

PVGLF_PHODV
305-326

PVME1_CVTKE
171-190

PVGLM_HANTH
1000-1020

PVGLF_PI1HC
456-477

PVGLM_HANTL
1001-1021

PVGLF_PI2H
450-471

PVGLM_HANTV
1001-1021

PVGLF_PI2HG
450-471

PVGLM_RVFVZ
1156-1176

PVGLF_PI2HT
450-471

PVGLM_SEOUR
1000-1020

PVGLF_PI3B
405-426
453-474

PVGLM_SEOUS
999-1019

PVGLF_PI3H4
453-474

PVGLM_UUK
925-945

PVGLF_RINDK
220-241

PVGLY_LYCVA
12-32

PVGLF_RINDL
220-241

PVGLY_LYCVW
12-32

PVGLF_SEND5
460-481

PVGLY_PIARV
12-32

PVGLF_SENDF
460-481

PVGNB_CPMV
141-161

PVGLF_SENDH
460-481

PVMAT_MUMPS
310-330

PVGLF_SENDJ
460-481

PVMAT_NDVA
309-329

PVGLF_SENDZ
460-481

PVMAT_NDVB
309-329

PVGLF_SV41
453-474

PVMAT_PI2HT
308-328

PVGLF_SV5
446-467

PVMAT_PI4HA
312-332

PVGLH_HCMVA
691-712

PVMAT_PI4HB
312-332

PVGLH_HCMVT
690-711

PVMAT_SV41
308-328

PVGLH_HSVE4
304-325

PVMAT_SV5
308-328

PVGLH_HSVEB
297-318

PVME1_IBV6
74-94

PVGLH_HSVSA
658-679

PVME1_IBVB
74-94

PVGLI_HSV2
2-23

PVME1_IBVB2
74-94

PVGLI_HSV23
2-23

PVME1_IBVK
74-94

PVGLM_BUNGE
197-218

PVMSA_HPBDB
201-221

PVGLM_BUNL7
190-211

PVMSA_HPBGS
209-229

PVGLM_BUNSH
190-211

PVMSA_HPBHE
293-313

PVGLM_BUNYW
193-214

PVMSA_WHV1
207-227

PVGLY_LASSG
237-258

PVMSA_WHV59
212-232

PVGLY_LASSJ
238-259

PVMSA_WHV7
212-232

PVGP8_EBV
67-88

PVMSA_WHV8
212-232

PVMO1_VACCC
281-302

PVMSA_WHVBI
212-232

PVMO1_VACCV
230-251

PVMSA_WHVW6
63-83

PVMAT_HRSVA
139-160

PVMAT_RINDK
200-221
239-260

PVMAT_TRTV
122-143

PVME1_CVHOC
64-85

PVMSA_HPBDB
201-222

PVMSA_HPBVO
70-91

PVMSA_HPBV2
244-265

PVMSA_HPBV4
244-265

PVMSA_HPBV9
244-265

PVMSA_HPBVA
233-254

PVMSA_HPBVD
70-91

PVMSA_HPBVI
233-254

PVMSA_HPBVJ
233-254

PVMSA_HPBVL
233-254

PVMSA_HPBVN
70-91

PVMSA_HPBVO
233-254

PVMSA_HPBVP
244-265

PVMSA_HPBVR
244-265

PVMSA_HPBVS
70-91

PVMSA_HPBVW
233-254

PVMSA_HPBVY
233-254

PVMSA_HPBVZ
233-254

PVMT2_IAANN
25-46

PVMT2_IABAN
25-46

PVMT2_IAFOW
25-46

PVMT2_IAFPR
25-46

PVMT2_IAFPW
25-46

PVMT2_IALE1
25-46

PVMT2_IALE2
25-46

PVMT2_IAMAN
25-46

PVMT2_IAPUE
25-46

PVMT2_IASIN
25-46

PVMT2_IAUDO
25-46

PVMT2_IAWIL
25-46

TABLE XII

Search Results Summary for P7CTLZIP, P8CTLZIP, and P9CTLZIP Motifs

P7CTLZIP
P8CTLZIP
P9CTLZIP

LIBRARY FILE
LIBRARY FILE
LIBRARY FILE

PENV_BAEVM
202-224

PENV1_FRSFV
380-403

PENV_BLVAF
303-327

PENV_HV1B1
498-520

PENV2_FRSFV
380-403

PENV_BLVAU
303-327

PENV_HV1B8
493-516

PENV_BIVO6
178-201

PENV_BLVAV
303-327

PENV_HV1BN
494-516

PENV_BIV27
207-230

PENV_BLVB2
303-327

PENV_HV1BR
503-525

PENV_FOAMV
864-887

PENV_BLVB6
303-327

PENV_HV1EL
495-517

PENV_HV1Z3
175-198

PENV_BLVJ
303-327

PENV_HV1H2
498-520

PENV_HV2BE
3-26
781-804
PENV_FIVPE
781-805

PENV_HV1H3
498-520

PENV_HV2CA
750-773

PENV_FIVSD
779-803

PENV_HV1J3
510-532

PENV_HV2D1
3-26
772-795
PENV_FIVT2
780-804

PENV_HV1JR
490-512

PENV_HV2G1
772-795

PHEMA_CVBLY
391-415

PENV_HV1KB
504-526

PENV_HV2NZ
777-800

PHEMA_CVBM
391-415

PENV_HV1MA
500-522

PENV_JSRV
541-564

PHEMA_CVBQ
391-415

PENV_HV1MF
496-518

PENV_SFV1
864-887

PHEMA_CVHOC
391-415

PENV_HV1ND
488-510

PENV_SFV3L
861-884

PHEMA_INCCA
442-466

PENV_HV1PV
498-520

PENV_SIVM1
803-826

PHEMA_INCEN
430-454

PENV_HV1S1
489-511

PENV_SIVMK
802-825

PHEMA_INCGL
430-454

PENV_HV1Z2
123-145
495-517
PENV_SIVML
801-824

PHEMA_INCHY
429-453

PENV_HV1Z6
497-519

PENV_SIVS4
806-829

PHEMA_INCJH
443-467

PENV_HV1Z8
505-527

PENV_SIVSP
810-833

PHEMA_INCKY
429-453

PENV_HV1ZH
498-520

PHEMA_CDVO
200-223

PHEMA_INCMI
429-453

PENV_JSRV
376-398

PHEMA_PI2H
65-88

PHEMA_INCNA
429-453

PENV_MPMV
213-235

PHEMA_PI2HT
65-88

PHEMA_INCP1
430-454

PENV_SRV1
213-235

PVF11_VACCC
161-184

PHEMA_INCP2
430-454

PHEMA_IAAIC
37-59

PVF15_VACCC
25-48

PHEMA_INCP3
430-454

PHEMA_IABAN
21-43

PVF16_VACCP
3-26

PHEMA_INCTA
430-454

PHEMA_IADA3
37-59

PVG1L_AMEPV
313-336

PHEMA_INCYA
430-454

PHEMA_IADH2
21-43

PVG28_HSVI1
491-514

PHEMA_MUMPM
101-125

PHEMA_IADH3
21-43

PVG43_HSVI1
322-345

PHEMA_MUMPR
101-125

PHEMA_IADH4
21-43

PVG52_HSVI1
229-252

PHEMA_MUMPS
101-125

PHEMA_IADH5
21-43

PVG67_HSVI1
722-745

PHEMA_PI1HW
29-53

PHEMA_IADH6
21-43

PVGL2_CVBF
10-33

PVENV_BEV
62-86

PHEMA_IADH7
21-43

PVGL2_CVBL9
651-674

PVFO5_VACCC
280-304

PHEMA_IADM2
37-59

PVGL2_CVBLY
10-33

PVFO5_VACCP
280-304

PHEMA_IADMA
28-50

PVGL2_CVM4
1267-1290

PVFO5_VACCV
281-305

PHEMA_IADU3
37-59

PVGL2_CVMA5
1215-1238

PVFO9_VACCC
176-200

PHEMA_IAEN6
21-43

PVGL2_CVMJH
1126-1149

PVFO9_VACCV
176-200

PHEMA_IAEN7
37-59

PVGL2_CVPFS
1274-1297

PVGO1_VZVD
58-82

PHEMA_IAMAO
37-59

PVGL2_CVPPU
1272-1295

PVG10_HSVSA
355-379

PHEMA_IAME1
37-59

PVGL2_CVPR8
1050-1073

PVG12_HSVSA
68-92

PHEMA_IAME2
37-59

PVGL2_CVPRM
1050-1073

PVG19_HSVI1
88-112

PHEMA_IAME6
21-43

PVGL2_FIPV
1277-1300

PVG28_HSVI1
173-197

PHEMA_IANT6
37-59

PVGL2_IBV6
196-219

PVG43_HSVI1
109-133

PHEMA_IAQU7
21-43

PVGL2_IBVB
195-218

PVG87_HSVI1
108-132
1005-1029

PHEMA_IATKM
33-55

PVGL2_IBVD2
196-219

PVG72_HSVI1
720-744

PHEMA_IAUDO
37-59

PVGL2_IBVD3
196-219

PVGF1_IBVB
3601-3625

PHEMA_IAVI7
38-60

PVGL2_IBVK
195-218

PVGLB_HSVMD
589-613

PHEMA_IAX31
37-59

PVGL2_IBVM
195-218

PVGLB_ILTV6
597-621

PHEMA_IAZCO
37-59

PVGL2_IBVU1
178-201

PVGLB_ILTVS
607-631

PHEMA_IAZH2
21-43

PVGL2_IBVU2
178-201

PVGLB_ILTVT
607-631

PHEMA_IAZH3
21-43

PVGL2_IBVU3
178-201

PVGLE_HSV11
413-437

PHEMA_IAZUK
37-59

PVGLB_HCMVA
535-558

PVGLE_VZVD
469-493

PHEMA_PHODV
36-58

PVGLB_HCMVT
536-559

PVGLF_SV5
401-425

PHEMA_PI2H
65-87

PVGLB_HSVSA
483-506

PVGLH_HCMVA
574-598

PHEMA_PI2HT
65-87

PVGLB_MCMVS
566-589

PVGLH_HCMVT
573-597

PVFP7_CAPVK
89-111

PVGLC_HSV11
467-490

PVGLH_HSV11
443-467
803-827

PVFUS_VACC6
72-94

PVGLC_HSV1K
467-490

PVGLH_HSV1E
443-467
803-827

PVGO1_HSVI1
317-339

PVGLC_HSV2
435-458

PVGLM_BUNL7
31-55

PVGO3_VACCC
50-72

PVGLC_HSV23
436-459

PVGLM_BUNSH
31-55

PVGO3_VARV
50-72

PVGLM_BUNL7
1387-1410

PVGLM_HANTH
694-718

PVGO4_VACCC
11-33

PVGLM_BUNSH
1387-1410

PVGLM_RVFV
344-368

PVGO4_VARV
11-33

PVGLM_UUK
966-989

PVGLM_RVFVZ
344-368

PVG19_HSVI1
88-110

PVGLY_JUNIN
12-35

PVGLM_UUK
561-585

PVG28_HSVI1
173-195

PVGLY_LASSG
12-35

PVGNM_CPMV
311-335

PVG29_HSVI1
20-42

PVGLY_LASSJ
12-35

PVGP2_EBV
657-681

PVG46_HSVI1
134-156

PVGLY_LYCVA
12-35

PVGP3_EBV
854-878

PVG48_HSVSA
71-93

PVGLY_LYCVW
12-35

PVM1_REOVD
280-304

PVG58_HSVSA
266-288

PVGLY_MOPEI
12-35

PVM1_REOVL
280-304

PVG59_HSVI1
267-289

PVGLY_TACV
12-35

PVM21_REOVD
168-192

PVG5_SPV4
42-64

PVGLY_TACV5
12-35

PVM22_REOVD
168-192

PVG60_HSVI1
63-75

PVGLY_TACV7
12-35

PVM2_REOVJ
168-192

PVG65_HSVI1
1347-1369

PVGLY_TACVT
12-35

PVM2_REOVL
168-192

PVG6_SPV1R
60-82

PVGNM_CPMV
741-764

PVMAT_MEASI
87-111

PVGL2_IBV6
1056-1078

PVM1_REOVD
324-347
454-477
PVMAT_SSPVB
314-338

PVGL2_IBVB
1055-1077

PVM1_REOVL
454-477

PVME1_CVBM
137-161

PVGL2_IBVD2
1056-1078

PVMAT_MUMPS
227-250

PVME1_CVHOC
137-161

PVGL2_IBVK
1055-1077

PVMSA_HPBDB
269-292

PVME1_CVTKE
137-161

PVGL2_IBVM
1055-1077

PVMSA_HPBDC
268-291

PVME1_IBV6
74-98

PVGLB_HSVSU
117-139

PVMSA_HPBDU
231-254

PVME1_IBVB
74-98

PVGLB_HSVB2
745-767

PVMSA_HPBDW
269-292

PVME1_IBVB2
74-98

PVGLC_HSVMB
399-421

PVMSA_HPBHE
236-259

PVME1_IBVK
74-98

PVGLC_HSVMG
398-420

PVMSA_HPBGS
271-295

PVGLC_HSVMM
399-421

PVMSA_WHV1
289-293

PVGLF_BRSVA
265-287
482-504

PVMSA_WHV59
274-298

PVGLF_BRSVC
484-506

PVMSA_WHV7
274-298

PVGLF_BRSVR
484-506

PVMSA_WHV8
274-298

PVGLF_HRSV1
484-506

PVMSA_WHV8I
274-298

PVGLF_HRSVA
484-506

PVMSA_WHVW6
125-149

PVGLF_HRSVL
484-506

PVGLF_HRSVR
484-506

PVGLF_TRTV
452-474

PVGLG_IHNV
77-99

PVGLG_VHSVO
406-428

PVGLH_HSVE4
814-836

PVGLH_HSVEB
807-829

PVGLI_HCMVA
158-180

PVGLM_PTPV
743-765

PVGLP_BEV
430-452
1546-1568

PVGLY_LASSG
426-448

PVGLY_LASSJ
427-449

PVGLY_MOPEI
425-447

PVGP2_EBV
657-679

PVGP3_EBV
854-876

PVM1_REOVD
414-436

PVM1_REOVL
414-436

PVM3_REOVD
304-326

PVMAT_PI1HC
195-217

PVMAT_PI2HT
132-154

PVMAT_SENDF
195-217

PVMAT_SENDH
195-217

PVMAT_SENDZ
195-217

PVMAT_SV41
132-154

PVMEM_EBV
131-153

PVMP_CERV
293-315

TABLE XIII

SEARCH RESULTS SUMMARY FOR P12LZIPC MOTIF

PCGENE
P12CTLZIP
All Viruses (No Bacteriophages)

FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9

P194K_TRVSY
POTENTIAL 194 KD PROTEIN
TOBACCO RATTLE VIRUS
360-378
463-478
600-619
641-668
1011-1030
1299-1325
1385-1409

(STRAIN SYM)

P3BHS_VACCC
3BETA-HSD
VACCINIA VIRUS (STRAIN
41-56
297-321

COPENHAGEN)

P3BHS_VACCV
3BETA-HSD
VACCINIA VIRUS (STRAIN WR)
41-56
297-321

P3BHS_VARV
3BETA-HSD
VARIOLA VIRUS
41-56

PAT3H_FOWPM
ANTITHROMBIN-III
FOWLPOX VIRUS (ISOLATE
47-69

HOMOLOG
HP-438[MUNICH])

PATI1_VACCV
94 KD A-TYPE INCLU-
VACCINIA VIRUS
387-410

SION PROTEIN
(STRAIN WR)

PATI1_VARV
81 KD A-TYPE INCLUSION
VARIOLA VIRUS
388-411

PROTEIN

PATI2_HSV11
UL46
HERPES SIMPLEX VIRUS
279-305

(TYPE I/STRAIN 17)

PATI2_HSV1F
UL46
HERPES SIMPLEX VIRUS
279-305

(TYPE I/STRAIN F)

PATI2_HSVEB
ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE I
197-222

FACTOR 82 KD PROTEIN
(STRAIN AB4P)

PATI2_VACCC
PUTATIVE A-TYPE INCLUSION
VACCINIA VIRUS (STRAIN
215-241

PROTEIN
COPENHAGEN)

PATI2_VZVD
ALPHA TRANS-INDUCING
VARICELLA-ZOSTER VIRUS
61-79
377-397

FACTOR 74 KD PROTEIN
(STRAIN DUMAS)

PATI3_VACCV
PUTATIVE A-TYPE INCLUSION
VACCINIA VIRUS (STRAIN WR)
47-73

PROTEIN

PATIN_HSVBP
ALPHA TRANS-INDUCING
BOVINE HERPESVIRUS TYPE I
101-120
277-292

PROTEIN
(STRAIN P8-2)

PATIN_HSVE4
ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE 4
104-123

PROTEIN

PATIN_HSVEB
ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE 1
129-148

PROTEIN
(STRAIN AB4P)

PATIN_VZVD
ALPHA TRANS-INDUCING
VARICELLA-ZOSTER VIRUS
203-230

PROTEIN
(STRAIN DUMAS)

PATI_COWPX
A-TYPE INCLUSION PROTEIN
COWPOX VIRUS
389-412
1102-1128

PB2_BBV
B2 PROTEIN
BLACK BEETLE VIRUS
31-52

PB701-HSV6G
TRANSCRIPTIONAL
HERPES SIMPLEX VIRUS
55-78

REGULATORY PROTEIN
(TYPE 6/STRAIN GS)

PBCRF_EBV
BCRF1 PROTEIN PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN
96-123

B95-8)

PBRL1_EBV
TRANSCRIPTION ACTIVATOR
EPSTEIN-BARR VIRUS
16-32
200-224

BRLF1
(STRAIN B95-8)

PCAHH_VACCC
CELL SURFACE-BINDING
VACCINIA VIRUS (STRAIN
188-203

PROTEIN
COPENHAGEN)

PCAHH_VACCV
CELL SURFACE-BINDING
VACCINIA VIRUS (STRAIN WR)
188-203

PROTEIN

PCAHH_VARV
CELL SURFACE-BINDING
VARIOLA VIRUS
188-203

PROTEIN

PCCPH_HSVSA
COMPL CONTROL PROTEIN
HERPESVIRUS SAIMIRI
326-348

HOMOLOG PREC
(STRAIN 11)

PCELF_HSV11
CELL FUSION PROTEIN
HERPES SIMPLEX VIRUS
178-196
212-238
286-309

PRECURSOR
(TYPE 1/STRAIN 17)

PCELF_HSV1K
CELL FUSION PROTEIN
HERPES SIMPLEX VIRUS
178-196
212-238

PRECURSOR
(TYPE 1/STRAIN KOS)

PCELF_HSV2H
CELL FUSION PROTEIN
HERPES SIMPLEX VIRUS
178-196
212-238
285-309

PRECURSOR
(TYPE 2/STRAIN HG52)

PCELF_HSVEB
CELL FUSION PROTEIN
HERPESVIRUS TYPE 1
205-223
249-268

PRECURSOR
(STRAIN KENTUCKY A)

PCELF_VZVD
CELL FUSION PROTEIN
VARICELLA-ZOSTER VIRUS
246-269

PRECURSOR
(STRAIN DUMAS)

PCGH2_HSVSA
CYCLIN HOMOLOG
HERPESVIRUS SAIMIRI
35-61
216-242

(STRAIN 11)

PCOA1_BFDV
COAT PROTEIN VP1
BUDGERIGAR FLEDGLING
93-110

DISEASE VIRUS

PCOA1_POVBA
COAT PROTEIN VP1
POLYOMAVIRUS BK (STRAIN AS)
25-52
97-123
233-251

PCOA1_POVBK
COAT PROTEIN VP1
POLYOMAVIRUS BK
25-52
97-123
233-251

PCOA1_POVBO
COAT PROTEIN VP1
BOVINE POLYOMAVIRUS
96-120

PCOA1_POVHA
COAT PROTEIN VP1
HAMSTER POLYOMAVIRUS
16-43

PCOA1_POVJC
COAT PROTEIN VP1
POLYOMAVIRUS JC
17-44
89-115
225-243

PCOA1_POVLY
COAT PROTEIN VP1
LYMPHOTROPIC POLYOMAVIRUS
97-123

PCOA1_POVMK
COAT PROTEIN VP1
MOUSE POLYOMAVIRUS (STRAIN
142-160
231-249

KILHAM)

PCOA1_SV40
COAT PROTEIN VP1
SIMIAN VIRUS 40
27-44
99-125
235-253

PCOA1_TTV1
COAT PROTEIN TP1
THERMOPROTEUS TENAX VIRUS 1
80-103

(STRAIN KRA1)

PCOA2_POVBO
COAT PROTEIN VP2
BOVINE POLYOMAVIRUS
77-104

PCOA2_POVLY
COAT PROTEIN VP2
LYMPHOTROPIC POLYOMAVIRUS
79-102

PCOA2_POVM3
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
205-226

(STRAIN 3)

PCOA3_TTV1
COAT PROTEIN TP3
THERMOPROTEUS TENAX VIRUS
33-55

1 (STRAIN KRA1)

PCOAT_ABMVW
COAT PROTEIN
ABUTILON MASAIC VIRUS
148-171

(ISOLATE WEST INDIA)

PCOAT_BOOLV
COAT PROTEIN PRECURSOR
BOOLARRA VIRUS
383-401

PCOAT_CHVP1
MAJOR CAPSID PROTEIN
PARAMECIUM BURSARIA
364-387
392-409

CHLORELLA VIRUS 1

PCOAT_CLVK
COAT PROTEIN
CASSAVA LATENT VIRUS (STRAIN
165-188

WEST KENYAN 844)

PCOAT_CLVN
COAT PROTEIN
CASSAVA LATENT VIRUS (STRAIN
165-188

NIGERIAN)

PCOAT_CMVSI
COAT PROTEIN
CYMBIDIUM MOSAIC VIRUS
58-76

(STRAIN SINGAPORE)

PCOAT_CNV
COAT PROTEIN
CUCUMBER NECROSIS VIRUS
19-42

PCOAT_CSMV
COAT PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
219-238

PCOAT_CTV36
COAT PROTEIN
CITRUS TRISTEZA VIRUS
72-94

(ISOLATE T36)

PCOAT_FCVC6
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN
564-587
642-664

CFI/68 FIV)

PCOAT_FCVF4
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN
564-587
642-657

JAPANESE F4)

PCOAT_FCVF9
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN F9)
567-590
645-660

PCOAT_FPV
COAT PROTEIN VP1
FELINE PANLEUKOPENIA VIRUS
690-705

PCOAT_FPV19
COAT PROTEIN VP1
FELINE PANLEUKOPENIA VIRUS
690-705

(STRAIN 193)

PCOAT_HEVS
COAT PROTEIN
HELENIUM VIRUS S
47-66

PCOAT_MEVA
COAT PROTEIN VP1
MINK ENTERITIS VIRUS
685-700

(STRAIN ABASHIRI)

PCOAT_MNSV
COAT PROTEIN
MELON NECROTIC SPOT VIRUS
37-53

PCOAT_MSTV
COAT PROTEIN
MAIZE STRIPE VIRUS
176-197
204-227

PCOAT_NMV
COAT PROTEIN
NARCISSUS MOSAIC VIRUS
67-86

PCOAT_NODAV
COAT PROTEIN PRECURSOR
NODAMURA VIRUS
379-394

PCOAT_ORSV
COAT PROTEIN
ODONTOGLOSSUM RINGSPOT
104-130

VIRUS

PCOAT_OYMV
COAT PROTEIN
ONONIS YELLOW MOSAIC VIRUS
35-52

PCOAT_PAVC2
COAT PROTEIN VP2
CANINE PARVOVIRUS
547-562

(TYPE 2/STRAIN A72)

PCOAT_PAVC7
COAT PROTEIN VP1
CANINE PARVOVIRUS (STRAIN
685-700

780929)

PCOAT_PAVCD
COAT PROTEIN VP1
CANINE PARVOVIRUS (STRAIN
700-715

CPV-D CORNELL 320)

PCOAT_PAVCN
COAT PROTEIN VP1
CANINE PARVOVIRUS (STAIN N)
711-726

PCOAT_PEMV
COAT PROTEIN PRECURSOR
PEPPER MOTTLE VIRUS
273-295

PCOAT_PMV
COAT PROTEIN
PAPAYA MOSAIC POTEXVIRUS
85-103

PCOAT_PPMVS
COAT PROTEIN
PEPPER MILD MOTTLE VIRUS
64-84
103-129

(STRAIN SPAIN)

PCOAT_PVSP
COAT PROTEIN
POTATO VIRUS S (STRAIN
129-147

PERUVIAN)

PCOAT_RSV
COAT PROTEIN
RICE STRIPE VIRUS
128-152

PCOAT_SMWLM
COAT PROTEIN
SATELLITE MAIZE WHITE LINE
51-67

MOSAIC VIRUS

PCOAT_SMYEA
COAT PROTEIN
STRAWBERRY MILD YELLOW
57-72

EDGE-ASSOCIATED VIRUS

PCOAT_TAMV
GENOME POLYPROTEIN
TAMARILLO MOSAIC VIRUS
222-237

PCOAT_TBSVB
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS
359-383

(STRAIN BS-3)

PCOAT_TCV
COAT PROTEIN
TURNIP CRINKLE VIRUS
73-89

PCOAT_TGMV
COAT PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
154-177

PCOAT_TMGMV
COAT PROTEIN
TOBACCO MILD GREEN MOSAIC
102-128

VIRUS (TMV STRAIN U2)

PCOAT_TMV
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128

(VULGARE)

PCOAT_TMV06
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128

(STRAIN 06)

PCOAT_TMVDA
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128

(STRAIN DAHLEMENSE)

PCOAT_TMVER
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128

(STRAIN ER)

PCOAT_TMVHR
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128

(STRAIN HOLMES RIBGRASS (HR))

PCOAT_TMVO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128

(STRAIN O)

PCOAT_TMVOM
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128

(STAIN OM)

PCOAT_TMVTO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128

(STRAIN TOMATO/L)

PCOAT_TNVA
COAT PROTEIN
TOBACCO NECROSIS VIRUS
119-142

(STRAIN A)

PCOAT_TNVD
COAT PROTEIN
TOBACCO NECROSIS VIRUS
108-134

(STRAIN D)

PCOLL_HSVSC
COLLAGEN-LIKE PROTEIN
HERPESVIRUS SAIMIRI
71-96

(SUBGROUP C/STRAIN 488)

PCORA_HPBV2
CORE ANTIGEN
HEPATITIS B VIRUS
79-100

(SUBTYPE ADW2)

PCORA_HPBVA
CORE ANTIGEN
HEPATITIS B VIRUS
15-31

(STRAIN ALPHA1)

PCORA_HPBVZ
CORE ANTIGEN
HEPATITIS B VIRUS
79-100

(SUBTYPE ADYW)

PDNBI_ADE02
PROBABLE DNA-BINDING
HUMAN ADENOVIRUS TYPE 2
71-93

PROTEIN

PDNBI_EBV
MAJOR DNA-BINDING
EPSTEIN-BARR VIRUS
649-673

PROTEIN
(STRAIN B95-8)

PDNBI_HCMVA
MAJOR DNA-BINDING
HUMAN CYTOMEGALOVIRUS
681-708

PROTEIN
(STRAIN AD169)

PDNBI_HSV11
MAJOR DNA-BINDING
HERPES SIMPLEX VIRUS
459-476
597-620

PROTEIN
(TYPE 1/STRAIN 17)

PDNBI_HSV1F
MAJOR DNA-BINDING
HERPES SIMPLEX VIRUS
459-476
597-620

PROTEIN
(TYPE 1/STRAIN F)

PDNBI_HSV1K
MAJOR DNA-BINDING
HERPES SIMPLEX VIRUS
459-476
597-620

PROTEIN
(TYPE 1/STRAIN KOS)

PDNBI_HSVB2
MAJOR DNA-BINDING
BOVINE HERPESVIRUS TYPE 2
455-472
596-616

PROTEIN
(STRAIN BMV)

PDNBI_HSVEB
MAJOR DNA-BINDING
EQUINE HERPESVIRUS TYPE 1
810-831

PROTEIN
(STRAIN AD4P)

PDNBI_HSVSA
MAJOR DNA-BINDING
HERPESVIRUS SAIMIRI
108-127
610-629
869-887
974-1000

PROTEIN
(STRAIN 11)

PDNBI_MCMVS
MAJOR DNA-BINDING
MURINE CYTOMEGALOVIRUS
657-684

PROTEIN
(STRAIN SMITH)

PDNBI_SCMVC
MAJOR DNA-BINDING
SIMIAN CYTOMEGALOVIRUS
188-212
643-670

PROTEIN
(STRAIN COLBURN)

PDNLI_VARV
DNA LIGASE
VARIOLA VIRUS
269-294

PDPOL_ADE02
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 2
264-283
828-850

PDPOL_ADE05
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 5
264-283
828-850

PDPOL_ADE07
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 7
331-350
494-517
894-916

PDPOL_ADE12
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 12
262-281
562-583
826-848

PDPOL_CBEPV
DNA POLYMERASE
CHORISTONEURA BIENNIS
430-454
654-678
732-757

ENTOMOPOXVIRUS

PDPOL_CHVN2
DNA POLYMERASE
CHLORELLA VIRUS NY-2A
424-442

PDPOL_CHVP1
DNA POLYMERASE
PARAMECIUM BURSARIA
153-172
424-442

CHLORELLA VIRUS 1

PDPOL_EBV
DNA POLYMERASE
EPSTEIN-BARR VIRUS
354-374
438-463
524-542
667-687
973-990

(STRAIN B95-8)

PDPOL_FOWPV
DNA POLYMERASE
FOWLPOX VIRUS
60-77
220-247

PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS
569-587
945-960
1029-1053

(STRAIN AD169)

PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
4-29
157-174
522-541
554-572

(BROWN SHANGHAI DUCK

ISOLATE S5)

PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
4-29
157-174
521-540
553-571

(STRAIN CHINA)

PDPOL_HPBDU
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
181-200
213-231

PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (WHITE
4-29
157-174
522-541
554-572

SHANGHAI DUCK ISOLATE S31)

PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS
448-475

VIRUS

PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
4-29
554-572

PDPOL_HPBV2
DNA POLYMERASE
HEPATITIS B VIRUS
412-439
447-463
763-780

(SUBTYPE ADW2)

PDPOL_HPBV4
DNA POLYMERASE
HEPATITIS B VIRUS
410-417

(SUBTYPE ADR4)

PDPOL_HPBV9
DNA POLYMERASE
HEPATITIS B VIRUS
412-439
447-463
763-780

(SUBTYPE ADW/STRAIN 991)

PDPOL_HPBVA
DNA POLYMERASE
HEPATITIS B VIRUS
80-96
399-426
434-450
750-767

(STRAIN ALPHA1)

PDPOL_HPBVI
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
445-468
761-778

ADW/STRAIN INDONESIA/

PIDW420)

PDPOL_HPBVJ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
445-468
761-778

ADW/STRAIN JAPAN/PJDW233)

PDPOL_HPBVL
DNA POLYMERASE
HEPATITIS B VIRUS (STRAIN
80-96
399-426
434-457
750-767

LSH/CHIMPANZEE ISOLATE)

PDPOL_HPBVM
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
760-777

ADR/MUTANT)

PDPOL_HPBVO
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
445-468
761-778

ADW/STRAIN OKINAWA/

PODW282)

PDPOL_HPBVP
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
412-439
447-463

ADW/STRAIN PHILIPPINO/

PFDW294)

PDPOL_HPBVR
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
761-778

ADR)

PDPOL_HPBVW
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
82-98
405-432
440-456

ADW)

PDPOL_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
399-426
434-457
750-767

AYW)

PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
399-426
434-457

ADYW)

PDPOL_HSV11
DNA POLYMERASE
HERPES SIMPLEX VIRUS
797-817
877-897
1073-1090

(TYPE 1/STRAIN 17)

PDPOL_HSV1A
DNA POLYMERASE
HERPES SIMPLEX VIRUS
797-817
877-897
1073-1090

(TYPE 1/STRAIN ANGELOTTI)

PDPOL_HSV1K
DNA POLYMERASE
HERPES SIMPLEX VIRUS
797-817
877-897
1073-1090

(TYPE 1/STRAIN KOS)

PDPOL_HSV1S
DNA POLYMERASE
HERPES SIMPLEX VIRUS
797-817
877-897
1073-1090

(TYPE 1/STRAIN SC16)

PDPOL_HSV21
DNA POLYMERASE
HERPES SIMPLEX VIRUS
802-822
882-902
1078-1095

(TYPE 2/STRAIN 186)

PDPOL_HSV6U
DNA POLYMERASE
HERPES SIMPLEX VIRUS
652-672
786-803
858-882

(TYPE 6/STRAIN UGANDA-1102)

PDPOL_HSVEB
DNA POLYMERASE
EQUINE HERPESVIRUS TYPE 1
283-299
377-392
454-477
798-818
878-898

(STRAIN AB4P)

PDPOL_HSVI1
DNA POLYMERASE
ICTALURID HERPESVIRUS 1
257-275
397-418

PDPOL_HSVSA
DNA POLYMERASE
HERPESVIRUS SAIMIRI
118-137
297-319
344-364
514-532
955-972

(STRAIN 11)

PDPOL_MCMVS
DNA POLYMERASE
MURINE CYTOMEGALOVIRUS
303-322
535-553
780-802

(STRAIN SMITH)

PDPOL_NPVAC
DNA POLYMERASE
AUTOGRAPHA CALIFORNICA
518-536
676-697

NUCLEAR POLYHEDROSIS VIRUS

PDPOL_VARV
DNA POLYMERASE
VARIOLA VIRUS
421-437

PDPOL_VZVD
DNA POLYMERASE
VARICELLA-ZOSTER VIRUS
312-331
363-382
440-463
713-740
757-781
1006-1024

(STRAIN DUMAS)

PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 1
446-473

PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS
451-478

VIRUS 59

PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
451-478

PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
450-477
554-571

PDPOL_WHV8I
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
451-478

PDPOL_WHVW6
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS
123-150

W64 (ISOLATE PWS23)

PDPOM_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS
399-426
434-450
750-767

(SUBTYPE AYW)

PDUT_HCMVA
DUTPASE
HUMAN CYTOMEGALOVIRUS
107-126

(STAIN AD169)

PDUT_HSVE4
DUTPASE
EQUINE HERPESVIRUS TYPE 4
130-154

(STRAIN 1942)

PDUT_HSVEB
DUTPASE
EQUINE HERPESVIRUS TYPE 1
130-149

(STRAIN AB4P)

PDUT_HDVI1
DUTPASE
ICTALURID HERPESVIRUS 1
72-95

PDUT_HSVSA
DUTPASE
HERPESVIRUS SAIMIRI
22-45
79-104
168-183

(STRAIN 11)

PE111_ADEM1
EARLY E1A 11 KD PROTEIN
MOUSE ADENOVIRUS TYPE 1
24-47

PE1A6_ADE07
EARLY E1A 6 3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
8-35

PE1A_ADE04
EARLY E1A 28 KD PROTEIN
HUMAN ADENOVIRUS TYPE 4
104-120

PE1A_ADE07
EARLY E1A 28 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
8-35

PE1A_ADES7
EARLY E1A 28 KD PROTEIN
SIMIAN ADENOVIRUS TYPE 7
173-189
238-254

PE1BL_ADE12
E1B PROTEIN, LARGE
HUMAN ADENOVIRUS TYPE 12
451-467

T-ANTIGEN

PE1BL_ADEC2
E1B PROTEIN, LARGE
CANINE ADENOVIRUS TYPE 2
101-122

T-ANTIGEN

PE1BL_ADENT
EARLY E1B 44 KD PROTEIN
TUPAIA ADENOVIRUS
75-101

PE1BS_ADEC2
E1B PROTEIN, SMALL
CANINE ADENOVIRUS TYPE 2
55-77

T-ANTIGEN

PE1BS_ADEM1
E1B PROTEIN, SMALL
MOUSE ADENOVIRUS TYPE 1
118-138

T-ANTIGEN

PE310_ADE02
EARLY E3B 10 4 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
3-21
34-60

PRECURSOR

PE310_ADE05
EARLY E3B 10 4 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
3-21
33-60

PRECURSOR

PE310_ADE07
EARLY E3B 4 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
3-24

PRECURSOR

PE311_ADE02
EARLY E3A 11 6 KD
HUMAN ADENOVIRUS TYPE 2
27-53

GLYCOPROTEIN

PE311_ADE03
EARLY E3 9 0 KD
HUMAN ADENOVIRUS TYPE 3
19-45

GLYCOPROTEIN

PE311_ADE05
EARLY E3A 10 5 KD
HUMAN ADENOVIRUS TYPE 5
20-46

GLYCOPROTEIN

PE311_ADE07
EARLY E3 7 7 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
36-62

PE314_ADE05
EARLY E3 14 5 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
108-125

PE315_ADE03
EARLY E3B 14 5 KD PROTEIN
HUMAN ADENOVIRUS TYPE 3
52-72

PRECURSOR

PE315_ADE07
EARLY E3B 14 9 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
52-72

PRECURSOR

PE316_ADE03
EARLY E3 16 KD
HUMAN ADENOVIRUS TYPE 3
102-125

GLYCOPROTEIN

PE321_ADE03
EARLY E3 20 5 KD
HUMAN ADENOVIRUS TYPE 3
146-167

GLYCOPROTEIN

PE321_ADE07
EARLY E3 20 5 KD
HUMAN ADENOVIRUS TYPE 7
146-167

GLYCOPROTEIN

PE322_ADEC1
EARLY E3 22 2 KD
CANINE ADENOVIRUS TYPE 1
155-177

GLYCOPROTEIN
(STRAIN GLAXO)

PE3GL_ADEM1
EARLY E3 17 7 KD
MOUSE ADENOVIRUS TYPE 1
105-127

GLYCOPROTEIN

PE411_ADE02
PROBABLE EARLY E4 11 KD
HUMAN ADENOVIRUS TYPE 2
56-77

PROTEIN

PE411_ADE05
PROBABLE EARLY E4 11 KD
HUMAN ADENOVIRUS TYPE 5
56-77

PROTEIN

PE433_ADEM1
PROBABLE EARLY E4 33 KD
MOUSE ADENOVIRUS TYPE 1
61-80

PROTEIN

PE434_ADE02
EARLY E4 34 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
80-106

PEAD_EBV
EARLY ANTIGEN PROTEIN D
EPSTEIN-BARR VIRUS
263-286

(STRAIN B95-8)

PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS
159-184

(STRAIN B95-8)

PEBN2_EBV
EBNA-2 NUCLEAR PROTEIN
EPSTEIN-BARR VIRUS
126-141

(STRAIN B95-8)

PEBN3_EBV
EBNA-3 NUCLEAR PROTEIN
EPSTEIN-BARR VIRUS
113-131
662-683

(STRAIN B95-8)

PEFT1_VARV
EARLY TRANSCRIPTION
VARIOLA VIRUS
21-41

FACTOR 70 KD SUBUNIT

PENV1_FRSFV
ENV POLYPROTEIN
FRIEND SPLEEN FOCUS-FORMIMG
380-407

PRECURSOR
VIRUS

PENV2_FRSFV
ENV POLYPROTEIN
FRIEND SPLEEN FOCUS-FORMING
380-407

PRECURSOR
VIRUS

PENV_AVIR3
ENV POLYPROTEIN
AVIAN RETROVIRUS RPL30
206-225

PENV_AVISU
COAT PROTEIN GP37
AVIAN SARCOMA VIRUS
98-117

(STRAIN UR2)

PENV_BAEVM
ENV POLYPROTEIN
BABOON ENDOGENOUS VIRUS
170-190
202-224

(STRAIN M7)

PENV_BIV06
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
47-68
178-201
434-450
525-546

PRECURSOR
VIRUS (ISOLATE 106)

PENV_BIV27
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
47-68
147-168
207-230
463-479
554-575

PRECURSOR
VIRUS (ISOLATE 127)

PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327

(AMERICAN ISOLATE FLK)

PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327

(AUSTRALIAN ISOLATE)

PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327

(AMERICAN ISOLATE VDM)

PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327

(BELGIUM ISOLATE LB285)

PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327

(BELGIUM ISOLATE LB59)

PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327

(JAPANESE ISOLATE BLV-1)

PENV_FENV1
ENV POLYPROTEIN
FELINE ENDOGENOUS VIRUS
30-47
225-246
630-651

PRECURSOR
ECE1

PENV_FIVPE
ENV POLYPROTEIN
FELINE ENDOGENOUS VIRUS
30-47
225-246
630-651

PRECURSOR
ECE1

PENV_FLVC6
ENV POLYPROTEIN
FELINE LEUKEMIA PROVIRUS
38-55
624-645

PRECURSOR
(CLONE CFE-6)

PENV_FLVGL
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
9-29
447-468
605-626

PRECURSOR
(STRAIN A/GLASGOW-1)

PENV_FLVLB
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
467-488
625-646

PRECURSOR
(STRAIN LAMBDA-B1)

PENV_FLVSA
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
444-465
602-623

PRECURSOR
(STRAIN SARMA)

PENV_FOAMV
ENV POLYPROTEIN
HUMAN SPUMARETROVIRUS
153-174
255-275
300-325
481-496
710-727
864-887
924-951
957-978

(FOAMY VIRUS)

PENV_FSVGA
ENV POLYPROTEIN
FELINE SARCOMA VIRUS
467-488
625-646

PRECURSOR
(STRAIN GARDNER-ARNSTEIN)

PENV_FSVGB
ENV POLYPROTEIN
FELINE SARCOMA VIRUS
447-468
605-626

PRECURSOR
(STRAIN GA)

PENV_FSVSM
ENV POLYPROTEIN
FELINE SARCOMA VIRUS
450-471
608-629

PRECURSOR
(STRAIN SM)

PENV_FSVST
ENV POLYPROTEIN
FELINE SARCOMA VIRUS
467-488

PRECURSOR
(STRAIN SNYDER-THEILEN)

PENV_GALV
ENV POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
519-540

PRECURSOR

PENV_HV1B1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
498-520

VIRUS TYPE 1 (BH10 ISOLATE)

PENV_HV1B8
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
493-515

VIRUS TYPE 1 (BH8 ISOLATE)

PENV_HV1BN
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
494-516

VIRUS TYPE 1 (BRAIN ISOLATE)

PENV_HV1BR
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
503-525

VIRUS TYPE 1 (BRU ISOLATE)

PENV_HV1C4
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
428-448

VIRUS TYPE 1 (CDC-451 ISOLATE)

PENV_HV1EL
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
495-517

VIRUS TYPE 1 (ELI ISOLATE)

PENV_HV1H2
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
498-520

VIRUS TYPE 1 (HXB2 ISOLATE)

PENV_HV1H3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
498-520

VIRUS TYPE 1 (HXB3 ISOLATE)

PENV_HV1J3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
510-532

VIRUS TYPE 1 (JH3 ISOLATE)

PENV_HV1JR
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
490-512

VIRUS TYPE 1 (JRCSF ISOLATE)

PENV_HV1KB
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
504-526
552-579
752-768

VIRUS TYPE 1 (STRAIN KB-1-GP32)

PENV_HV1MA
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
500-522

VIRUS TYPE 1 (MAL ISOLATE)

PENV_HV1MF
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
496-518

VIRUS TYPE 1 (MFA ISOLATE)

PENV_HV1N5
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
178-203

VIRUS TYPE 1 (NEW YORK-5

ISOLATE)

PENV_HV1ND
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
488-510

VIRUS TYPE 1 (NDK ISOLATE)

PENV_HV1OY
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
123-140

VIRUS TYPE 1 (OYI ISOLATE)

PENV_HV1PV
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
498-520

VIRUS TYPE 1 (PV22 ISOLATE)

PENV_HV1RH
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
445-460

VIRUS TYPE 1 (RF/HAT ISOLATE)

PENV_HV1S1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
489-511
738-754

VIRUS TYPE 1 (SF162 ISOLATE)

PENV_HV1S3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
300-322

VIRUS TYPE 1 (SF33 ISOLATE)

PENV_HV122
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
123-145
410-427
495-517

VIRUS TYPE 1 (Z2/CDC-Z34

ISOLATE)

PENV_HV1Z3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
117-133
175-198

VIRUS TYPE 1 (ZAIRE 3 ISOLATE)

PENV_HV1Z6
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
497-519

VIRUS TYPE 1 (ZAIRE 6 ISOLATE)

PENV_HV1Z8
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
505-527

VIRUS TYPE 1 (Z-84 ISOLATE)

PENV_HV1ZH
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
123-142
438-453
498-520

VIRUS TYPE 1 (ZAIRE HZ321

ISOLATE)

PENV_HV2BE
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
3-26
750-775
781-804

VIRUS TYPE 2 (ISOLATE BEN)

PENV_HV2CA
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
750-777

VIRUS TYPE 2 (ISOLATE CAM2)

PENV_HV2D1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
3-26
741-766
772-795

VIRUS TYPE 2 (ISOLATE D194)

PENV_HV2D2
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
9-28

VIRUS TYPE 2 (ISOLATE D205.7)

PENV_HV2G1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
741-766
772-795

VIRUS TYPE 2 (ISOLATE GHANA-1)

PENV_HV2NZ
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
742-767
777-800

VIRUS TYPE 2 (ISOLATE NIH-Z)

PENV_HV2RO
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
751-776

VIRUS TYPE 2 (ISOLATE ROD)

PENV_HV2SB
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
743-768
778-804

VIRUS TYPE 2 (ISOLATE SBLISY)

PENV_HV2ST
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
745-770

VIRUS TYPE 2 (ISOLATE ST)

PENV_JSRV
ENV POLYPROTEIN
SHEEP PULMONARY
104-119
299-325
376-398
541-564

PRECURSOR
ADENOMATOSIS VIRUS

PENV_MCFF
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING
600-621

PRECURSOR
MURINE LEUKEMIA VIRUS

PENV_MCFF3
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING
601-622

PRECURSOR
MURINE LEUKEMIA VIRUS

(ISOLATE CI-

PENV_MLVAV
ENV POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
630-651

PRECURSOR

PENV_MLVCB
ENV POLYPROTEIN
CAS-BR-E MURINE LEUKEMIA
625-646

PRECURSOR
VIRUS

PENV_MLVF5
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
639-660

PRECURSOR
VIRUS (ISOLATE 57)

PENV_MLVFF
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
639-660

PRECURSOR
VIRUS (ISOLATE FB29)

PENV_MLVFP
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
639-660

PRECURSOR
VIRUS (ISOLATE PVC-211)

PENV_MLVHO
ENV POLYPROTEIN
HOMULV MURINE LEUKEMIA
626-647

PRECURSOR
VIRUS (MUS HORTULANUS

VIRUS)

PENV_MLVKI
ENV POLYPROTEIN
KRISTEN MURINE LEUKEMIA
167-188

VIRUS

PENV_MLVMO
ENV POLYPROTEIN
MOLONEY MURINE LEUKEMIA
629-650

PRECURSOR
VIRUS

PENV_MLVRD
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA
624-645

PRECURSOR
VIRUS

PENV_MLVRK
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA
624-645

PRECURSOR
VIRUS (STRAIN KAPLAN)

PENV_MMTVB
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR
643-663

VIRUS (STRAIN BR6)

PENV_MMTVG
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR
643-663

VIRUS (STRAIN GR)

PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
213-235

PENV_MSVFB
ENV POLYPROTEIN
FBJ MURINE OSTEOSARCOMA
170-191

VIRUS

PENV_OMVVS
ENV POLYPROTEIN
OVINE LENTIVIRUS
658-683

PRECURSOR
(STRAIN SA-OMVV)

PENV_RMCFV
ENV POLYPROTEIN
RAUSCHER MINK CELL
603-624

PRECURSOR
FOCUS-INDUCING VIRUS

PENV_RSVP
ENV POLYPROTEIN
ROUS SARCOMA VIRUS
42-69
533-552

(STRAIN PRAGUE C)

PENV_SFV1
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
300-325
710-727
864-887
924-951
957-978

PENV_SFV3L
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS
157-178
304-329
707-724
861-884
921-948
954-975

(TYPE 3/STRAIN LK3)

PENV_SIVA1
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
437-458

VIRUS (AGM155 ISOLATE)

PENV_SIVAG
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
442-463

VIRUS (AGM3 ISOLATE)

PENV_SIVA1
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
421-442

VIRUS (ISOLATE AGM/CLONE

GRI-1)

PENV_SIVAT
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
435-456

VIRUS (TYO-1 ISOLATE)

PENV_SIVGB
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
93-109

VIRUS (ISOLATE GB1)

PENV_SIVM1
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
766-793
803-826

VIRUS (MM142-83 ISOLATE)

PENV_SIVMK
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
139-154
765-792
802-825

VIRUS (K6W ISOLATE)

PENV_SIVML
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
139-154
764-791
801-824

VIRUS (K78 ISOLATE)

PENV_SIVS4
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
769-789
806-829

VIRUS (F236/SMH4 ISOLATE)

PENV_SIVSP
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
773-793
810-833

VIRUS (BPJ/BC13 ISOLATE)

PENV_SMSAV
P15E PROTEIN
SIMIAN SARCOMA VIRUS
42-63

PENV_SRV1
ENV POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
213-235

PERBA_AVIER
ERBA ONCOGENE PROTEIN
AVIAN ERYTHROBLASTOSIS
227-249

VIRUS (STRAIN ES4)

PETF1_FOWP1
EARLY TRANSCRIPTION
FOWLPOX VIRUS (STRAIN FP-1)
21-41
73-92

FACTOR

PETF1_SFVKA
EARLY TRANSCRIPTION
SHOPE FIBROMA VIRUS
21-41

FACTOR
(STRAIN KASZA)

PETF1_VACCC
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN
21-41

FACTOR
COPENHAGEN)

PETF1_VACCV
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN WR)
21-41

FACTOR

PETF2_VACCC
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN
50-73
101-117
165-187
285-308
558-582

FACTOR 82 KD SUBUNIT
COPENHAGEN)

PETF2_VACCV
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN WR)
48-72

FACTOR 82 KD SUBUNIT

PETF2_VARV
EARLY TRANSCRIPTION
VARIOLA VIRUS
50-73
101-117
165-187
285-308
558-582

FACTOR 82 KD SUBUNIT

PEXON_HSV11
ALKALINE EXONUCLEASE
HERPES SIMPLEX VIRUS
165-180

(TYPE 1/STRAIN 17)

PEXON_HSV2
ALKALINE EXONUCLEASE
HERPES SIMPLEX VIRUS (TYPE 2)
155-170

PEXON_HSVEB
ALKALINE EXONUCLEASE
EQUINE HERPES VIRUS TYPE 1
276-291

(STRAIN AB4P)

PEXON_PRVN3
ALKALINE EXONUCLEASE
PSEUDORABIES VIRUS
36-51

(STRAIN NIA-3)

PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS
28-44
217-262

(STRAIN DUMAS)

PFIB2_ADE40
41 4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
116-133

PFIB2_ADE41
41 4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
116-133

PFIBP_ADE03
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 3
152-173

PFIBP_ADE05
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 5
447-473

PFIBP_ADEB3
FIBER PROTEIN
BOVINE ADENOVIRUS TYPE 3
347-372
775-801

(MASTADENOVIRUS BOS3)

PFIBP_ADEC1
FIBER PROTEIN
CANINE ADENOVIRUS TYPE 1
382-397

(STRAIN GLAXO)

PFIBP_ADEM1
FIBER PROTEIN
MOUSE ADENOVIRUS TYPE 1
191-215
227-252
493-513
548-571
579-599

PGAG_AVEV1
GAG POLYPROTEIN
AVIAN ENDOGENOUS VIRUS EV-1
53-78

PGAG_AVEV2
GAG POLYPROTEIN
AVIAN ENDOGENOUS
2-27

ROUS-ASSOCIATED VIRUS-0

PGAG_AVIMC
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS
53-78

VIRUS MC29

PGAG_AVIMD
GAG POLYPROTEIN
AVIAN MYELOCTYOMATOSIS
53-78

VIRUS HB1

PGAG_AVISU
CORE PROTEIN P19
AVIAN SARCOMA VIRUS
53-78

(STRAIN UR2)

PGAG_AVISY
GAG POLYPROTEIN
AVIAN SARCOMA VIRUS
53-78

(STRAIN Y73)

PGAG_BAEVM
GAG POLYPROTEIN
BABOON ENDOGENOUS VIRUS
397-422

(STRAIN M7)

PGAG_BLVAU
GAG POLYPROTEIN
BOVINE LEUKEMIA VIRUS
212-238

(AUSTRALIAN ISOLATE)

PGAG_BLVJ
GAG POLYPROTEIN
BOVINE LEUKEMIA VIRUS
213-239

(JAPANESE ISOLATE BLV-1)

PGAG_CAEVC
GAG POLYPROTEIN
CAPRINE ARTHRITIS
102-119

ENCEPHALITIS VIRUS (STRAIN

CORK)

PGAG_FUJSV
GAG POLYPROTEIN
FUJINAMI SARCOMA VIRUS
53-78

PGAG_HTL1A
GAG POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
77-94

TYPE 1 (STRAIN ATK)

PGAG_HTL1C
GAG POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
77-94

TYPE 1 (CARIBBEAN ISOLATE)

PGAG_HTL1M
GAG POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
77-94

TYPE 1 (ISOLATE MT-2)

PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (ARV2/SF2

ISOLATE)

PGAG_HV1B1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (BH10 ISOLATE)

PGAG_HV1B5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (BH5 ISOLATE)

PGAG_HV1BR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (BRU ISOLATE)

PGAG_HV1C4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (CDC-451 ISOLATE)

PGAG_HV1EL
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (ELI ISOLATE)

PGAG_HV1H2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (HXB2 ISOLATE)

PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (JH3 ISOLATE)

PGAG_HV1JR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (JRCSF ISOLATE)

PGAG_HV1MA
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
262-285

VIRUS TYPE 1 (MAL ISOLATE)

PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (MN ISOLATE)

PGAG_HV1N5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (NEW YORK-5

ISOLATE)

PGAG_HV1ND
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91
352-373

VIRUS TYPE 1 (NDK ISOLATE)

PGAG_HV1OY
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (OY1 ISOLATE)

PGAG_HV1PV
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (PV22 ISOLATE)

PGAG_HV1RH
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (RF/HAT ISOLATE)

PGAG_HV1U4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (STRAIN

UGANDAN/ISO)

PGAG_HV1W2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (WMJ2 ISOLATE)

PGAG_HV1Z2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91

VIRUS TYPE 1 (Z2/CDC-Z34

ISOLATE)

PGAG_IPMA
RETROVIRUS-RELATED GAG
MOUSE INTRACISTERNAL
757-772

POLYPROTEIN
A-PARTICLE

PGAG_MMTVB
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR
82-97

VIRUS (STRAIN BR6)

PGAG_MMTVC
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR
82-97

VIRUS (STRAIN C3H)

PGAG_MMTVG
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR
82-97

VIRUS (STRAIN GR)

PGAG_RSVP
GAG POLYPROTEIN
ROUS SARCOMA VIRUS
53-78

(STRAIN PRAGUE C)

PGAG_SCVLA
MAJOR COAT PROTEIN
SACCAROMYCES CEREVISIAE
618-645

VIRUS L-A

PGAG_SFV1
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
85-103

PGAG_SFV3L
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS
83-101

(TYPE 3/STRAIN LK3)

PGAG_SIVA1
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
189-213

VIRUS (AGM155 ISOLATE)

PGAG_SIVAG
GAG POLYPROTEIN
SIMIAN IMMUNODIFICIENCY
193-217

VIRUS (AGM3 ISOLATE)

PGAG_SIVAT
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
189-213

VIRUS (TYO-1 ISOLATE)

PGAG_SIVCZ
GAG POLYPROTEIN
CHIMPANZEE
66-92

IMMUNODEFICIENCY VIRUS

(SIV(CPZ))

PGAG_SIVGB
GAG POLYPROTEIN
SIMIAN IMMUNODIFICIENCY
66-92

VIRUS (ISOLATE GB1)

PGAG_SIVM1
GAG POLYPROTEIN
SIMIAN IMMUNODEFCICENCY

VIRUS (MM142-83 ISOLATE)

PGAG_SMRVH
GAG POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS
286-307

(SMRV-H)

PGLRX_VACCC
POSSIBLE GLUTAREDOXIN
VACCINIA VIRUS (STRAIN
71-87

COPENHAGEN), AND (STRAIN

L-1VP)

PGLRX_VARV
POSSIBLE GLUTAREDOXIN
VARIOLA VIRUS
71-87

PGRAN_GVAS
GRANULIN
AGROTIS SEGETUM GRANULOSIS
208-226

VIRUS

PGRAN_GVTN
GRANULIN
TRICHOPLUSIA NI GRANULOSIS
209-227

VIRUS

PGRFA_VACCC
GROWTH FACTOR
VACCINIA VIRUS (STRAIN
104-124

COPENHAGEN)

PGRFA_VACCV
GROWTH FACTOR
VACCINIA VIRUS (STRAIN WR)
104-123

PGRFA_VARV
GROWTH FACTOR
VARIOLA VIRUS
104-122

PHELI_EBV
PROBABLE HELICASE
EPSTEIN-BARR VIRUS
180-207
338-361
438-464

(STRAIN B95-8)

PHELI_HCMVA
PROBABLE HELICASE
HUMAN CYTOMEGALOVIRUS
397-420
539-560
826-852

(STRAIN AD169)

PHELI_HSV11
PROBABLE HELICASE
HERPES SIMPLEX VIRUS
389-408
628-646

(TYPE 1/STRAIN 17)

PHELI_HSV2H
PROBABLE HELICASE
HERPES SIMPLEX VIRUS
290-309
529-554

(TYPE 2/STRAIN HG52)

PHELI_HSVEB
PROBABLE HELICASE
EQUINE HERPESVIRUS TYPE 1
181-204
243-266
394-413

(STRAIN AB4P)

PHELI_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI
327-350
389-411
658-683

(STRAIN 11)

PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS
165-189
383-402
561-578
761-786

(STRAIN DUMAS)

PHEMA_CDVO
HEMAGGLUTININ-
CANINE DISTEMPER VIRUS
36-53
200-223

NEURAMINIDASE
(STRAIN ONDERSTEPOORT)

PHEMA_CVBF
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS
391-415

PRECURSOR
(STRAIN F15)

PHEMA_CVBLY
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS
391-415

PRECURSOR
(STRAIN LY-138)

PHEMA_CVBM
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS
391-415

PRECURSOR
(STRAIN MEBUS)

PHEMA_CVBQ
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN
391-415

PRECURSOR
QUEBEC), AND (STRAIN L9)

PHEMA_CVHOC
HEMAGGLUTININ-ESTERASE
HUMAN CORONAVIRUS
391-415

PRECURSOR
(STRAIN OC43)

PHEMA_CVMA5
HEMAGGLUTININ-ESTERASE
MURINE CORONAVIRUS MHV
402-423

PRECURSOR
(STRAIN A59)

PHEMA_CVMS
HEMAGGLUTININ-ESTERASE
MURINE CORONAVIRUS MHZ
403-418

PRECURSOR
(STRAIN S)

PHEMA_IAAIC
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/AICHI/2/68)

PHEMA_IABAN
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/BANGKOK/1/79)

PHEMA_IABUD
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/BUDGERIGAR/HOKKAIDO/1/77)

PHEMA_IACKA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/CHICKEN/ALABAMA/1/75)

PHEMA_IACKG
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
81-101
231-247
316-333

PRECURSOR
A/CHICKEN/GERMANY/N/49)

PHEMA_ICAKP
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
302-319

PRECURSOR
A/CHICKEN/PENNSYLVANIA/1/83)

PHEMA_IACKQ
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
302-319

PRECURSOR
A/CHICKEN/PENNSYLVANIA/

1370/83)

PHEMA_IACKS
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
319-336

PRECURSOR
A/CHICKEN/SCOTLAND/59)

PHEMA_IACKV
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/CHICKEN/VICTORIA/1/85)

PHEMA_IADA1
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/DUCK/ALBERTA/28/76)

PHEMA_IADA3
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/DUCK/ALBERTA/78/76)

PHEMA_IADCZ
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/DUCK/CZECHOSLOVAKIA/56)

PHEMA_IADE1
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
266-287
319-336

PRECURSOR
A/DUCK/ENGLAND/1/56)

PHEMA_IADH1
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
306-323

PRECURSOR
A/DUCK/HOKKAIDO/5/77)

PHEMA_IADH2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/DUCK/HOKKAIDO/8/80)

PHEMA_IADH3
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/DUCK/HOKKAIDO/33/80)

PHEMA_IADH4
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/DUCK/HOKKAIDO/7/82)

PHEMA_IADH5
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
215-237

PRECURSOR
A/DUCK/HOKKAIDO/21/82)

PHEMA_IADH6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/DUCK/HOKKAIDO/9/85)

PHEMA_IADH7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/DUCK/HOKKAIDO/10/85)

PHEMA_IADM2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/DUCK/MEMPHIS/928/74)

PHEMA_IADMA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
28-50
81-101

PRECURSOR
A/DUCK/MANITOBA/1/53)

PHEMA_IADNZ
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/DUCK/NEW ZEALAND/31/76)

PHEMA_IADU3
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/DUCK/UKRAINE/1/63)

PHEMA_IAEN6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

A/ENGLAND/878/69)

PHEMA_IAEN7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/ENGLAND/321/77)

PHEMA_IAFPR
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/FOWL PLAGUE VIRUS/

ROSTOCK/34)

PHEMA_IAGRE
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/GREY TEAL/AUSTRALIA/2/79)

PHEMA_IAGU2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/GULL/MARYLAND/704/77)

PHEMA_IAGUA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
319-336

PRECURSOR
A/GULL/ASTRAKHAN/227/84)

PHEMA_IAHAL
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
321-338

PRECURSOR
A/EQUINE/ALGIERS/72)

PHEMA_IAHC6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/EQUINE/CAMBRIDGE/1/63)

PHEMA_IAHC7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/EQUINE/CAMBRIDGE/1/73)

PHEMA_IAHCD
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/EQUINE/C DETROIT/1/64)

PHEMA_IAHDE
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/EQUINE/DETROIT/1/64)

PHEMA_IAHFO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338

PRECURSOR
A/EQUINE/FONTAINEBLEAU/76)

PHEMA_IAHK6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
321-338

PRECURSOR
A/EQUINE/KENTUCKY/2/86)

PHEMA_IAHK7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338

PRECURSOR
A/EQUINE/KENTUCKY/1/87)

PHEMA_IAHLE
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/EQUINE/LEXINGTON/1/66)

PHEMA_IAHLO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/EQUINE/LONDON/1416/73)

PHEMA_IAHMI
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338

PRECURSOR
A/EQUINE/MIAMI/1/63)

PHEMA_IAHNM
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338

PRECURSOR
A/EQUINE/NEW MARKET/76)

PHEMA_IAHNN
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
315-332

PRECURSOR
A/EQUINE/NEW MARKET/1/77)

PHEMA_IAHPR
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
315-332

PRECURSOR
A/EQUINE/PRAGUE/1/56)

PHEMA_IAHRO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338

PRECURSOR
A/EQUINE/ROMANIA/80)

PHEMA_IAHSA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338

PRECURSOR
A/EQUINE/SANTIAGO/1/85)

PHEMA_IAHSP
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/EQUINE/SAO PAULO/1/76)

PHEMA_IAHSW
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/EQUINE/SWITZERLAND/137/72)

PHEMA_IAHTE
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338

PRECURSOR
A/EQUINE/TENNESSEE/5/86)

PHEMA_IAHTO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338

PRECURSOR
A/EQUINE/TOKYO/71)

PHEMA_IAHUR
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338

PRECURSOR
A/EQUINE/URUGUAY/1/63)

PHEMA_IAJAP
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
317-334

PRECURSOR
A/JAPAN/305/57)

PHEMA_IAMAA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
197-223
319-336

PRECURSOR
A/MALLARD/ASTRAKHAN/244/82)

PHEMA_IAMAB
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
202-228
324-341

PRECURSOR
A/MALLARD/ASTRAKHAN/263/82)

PHEMA_IAMAO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/MALLARD/NEW YORK/6874/78)

PHEMA_IAME1
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/MEMPHIS/1/71)

PHEMA_IAME2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/MEMPHIS/102/72)

PHEMA_IAME6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/MEMPHIS/6/86)

PHEMA_IAMIN
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
85-101
231-247
316-333

PRECURSOR
A/MINK/SWEDEN/84)

PHEMA_IANT6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/NT/60/68)

PHEMA_IAPIL
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/PILOT WHALE/MAINE/328/84)

PHEMA_IAQU7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/QU/T/70)

PHEMA_IARUD
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/RUDDY TURNSTONE/

NEW JERSEY/47)

PHEMA_IASE2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337

PRECURSOR
A/SEAL/MASSACHUSETTS/133/82)

PHEMA_IASH2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
234-250
321-338

PRECURSOR
A/SHEARWATER/AUSTRALIA/72)

PHEMA_IASTA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332

PRECURSOR
A/STARLING/VICTORIA/5156/85)

PHEMA_IATKM
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
33-55
320-337

PRECURSOR
A/TURKEY/MINNESOTA/833/80)

PHEMA_IATKO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
233-249

PRECURSOR
A/TURKEY/ONTARIO/7732/66)

PHEMA_IATKR
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246

PRECURSOR
A/TURKEY/OREGON/71)

PHEMA_IATKW
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
229-245

PRECURSOR
A/TURKEY/WISCONSIN/1/66)

PHEMA_IAUDO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339
380-397

PRECURSOR
A/UDORN/307/72)

PHEMA_IAVI7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
38-60
323-340

PRECURSOR
A/VICTORIA/3/75)

PHEMA_IAX31
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59

PRECURSOR
X-31)

PHEMA_IAZCO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/SWINE/COLORADO/1/77)

PHEMA_IAZH2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/SWINE/HONG KONG/81/78)

PHEMA_IAZH3
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323

PRECURSOR
A/SWINE/HONG KONG/126/82)

PHEMA_IAZUK
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339

PRECURSOR
A/SWINE/UKKEL/1/84)

PHEMA_INBAA
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
115-131
295-310

PRECURSOR
B/ANN ARBOR/1/86)

PHEMA_INBBE
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
303-318

PRECURSOR
B/BEIJING/1/87)

PHEMA_INBBO
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
293-308

PRECURSOR
B/BONN/43)

PHEMA_INBEN
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
301-316

PRECURSOR
B/ENGLAND/222/82)

PHEMA_INBFU
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
108-124
286-301

B/FUKUOKA/80/81)

PHEMA_INBGL
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
119-135
296-311

PRECURSOR
B/GL/54)

PHEMA_INBHK
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
293-308

PRECURSOR
B/HONG KONG/8/73)

PHEMA_INBIB
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
108-124
288-303

B/IBARAKI/2/85)

PHEMA_INBID
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
120-136
299-314

PRECURSOR
B/ID/86)

PHEMA_INBLE
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
302-317

PRECURSOR
B/LEE/40)

PHEMA_INBMD
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
113-129
292-307

PRECURSOR
B/MARYLAND/59)

PHEMA_INBME
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
296-311

PRECURSOR
B/MEMPHIS/6/86)

PHEMA_INBNA
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
108-124
288-303

B/NAGASAKI/1/87)

PHEMA_INBOR
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
301-316

PRECURSOR
B/OREGON/5/80)

PHEMA_INBSI
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
301-316

PRECURSOR
B/SINGAPORE/222/79)

PHEMA_INBSJ
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
119-135
298-313

PRECURSOR
B/SINGAPORE/64)

PHEMA_INBUS
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
294-309

PRECURSOR
B/USSR/100/83)

PHEMA_INBVI
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
296-311

PRECURSOR
B/VICTORIA/3/85)

PHEMA_INBVK
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
303-318

PRECURSOR
B/VICTORIA/2/87)

PHEMA_INBYB
HEMAGGLUTINI
INFLUENZA B VIRUS (STRAIN
108-124
286-301

B/YAMAGATA/16/88)

PHEMA_INCCA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
442-466

PRECURSOR
C/CALIFORNIA/78)

PHEMA_INCEN
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454

PRECURSOR
C/ENGLAND/892/83)

PHEMA_INCGL
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454

PRECURSOR
C/GREAT LAKES/1167/54)

PHEMA_INCHY
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
429-453

C/HYOGO/1/83)

PHEMA_INCJH
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
443-467

PRECURSOR
C/JOHANNESBURG/1/66)

PHEMA_INCKY
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
429-453

C/KYOTO/41/82)

PHEMA_INCMI
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
429-453

PRECURSOR
C/MISSISSIPPI/80)

PHEMA_INCNA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
429-453

C/NARA/82)

PHEMA_INCP1
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454

PRECURSOR
C/PIG/BEIJING/10/81)

PHEMA_INCP2
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454

PRECURSOR
C/PIG/BEIJING/115/81)

PHEMA_INCP3
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454

PRECURSOR
C/PIG/BEIJING/439/82)

PHEMA_INCTA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454

PRECURSOR
C/TAYLOR/1233/47)

PHEMA_INCYA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454

PRECURSOR
C/YAMAGATA/10/81)

PHEMA_MUMP1
HEMAGGLUTININ-
MUMPS VIRUS (STRAIN SBL-1)
101-125
133-148
225-246
367-394
397-417

NEURAMINIDASE

PHEMA_MUMPM
HEMAGGLUTININ-
MUMPS VIRUS (STRAIN
101-125
133-148
225-246
367-394
397-417

NEURAMINIDASE
MIYAHARA VACCINE)

PHEMA_MUMPR
HEMAGGLUTININ-
MUMPS VIRUS (STRAIN RW)
101-125
133-148
225-246
367-394
397-417

NEURAMINIDASE

PHEMA_MUMPS
HEMAGGLUTININ-
MUMPS VIRUS (STRAIN SBL)
101-125
133-148

NEURAMINIDASE

PHEMA_NDVA
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110

NEURAMINIDASE
(STRAIN AUSTRALIA-

VICTORIA/32)

PHEMA_NDVB
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110

NEURAMINIDASE
(STRAIN BEAUDETTE C/45)

PHEMA_NDVD
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110

NEURAMINIDASE
(STRAIN D26/76)

PHEMA_NDVH4
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110

NEURAMINIDASE
(STRAIN B1-HITCHNER/47)

PHEMA_NDVI
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110

NEURAMINIDASE
(STRAIN ITALIEN/45)

PHEMA_NDVM
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110

NEURAMINIDASE
(STRAIN MIYADERA/51)

PHEMA_NDVQ
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110

NEURAMINIDASE
(STRAIN QUEENSLAND/66)

PHEMA_NDVTG
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110

NEURAMINIDASE
(STRAIN TEXAS G B/48)

PHEMA_NDVU
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110

NEURAMINIDASE
(STRAIN ULSTER/67)

PHEMA_PHODV
HEMAGGLUTININ-
PHOCINE DISTEMPER VIRUS
36-58
213-234
493-513

NEURAMINIDASE

PHEMA_PI1HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 1 VIRUS
29-53
322-342
345-360
486-503

NEURAMINIDASE
(STRAIN WASHINGTON/1957)

PHEMA_PI2H
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 2 VIRUS
13-40
65-88
118-136

NEURAMINIDASE
(PIV-2)

PHEMA_PI2HT
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 2 VIRUS
13-40
65-88
118-136

NEURAMINIDASE
(STRAIN TOSHIBA)

PHEMA_PI3B
HEMAGGLUTININ-
BOVINE PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340

NEURAMINIDASE

PHEMA_PI3H4
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340

NEURAMINIDASE
(STRAIN N1H 47885)

PHEMA_PI3HA
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340

NEURAMINIDASE
(STAIN AUS/124854/74)

PHEMA_PI3HT
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340

NEURAMINIDASE
(STRAIN TEX/545/80)

PHEMA_PI3HU
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340

NEURAMINIDASE
(STRAIN TEX/9305/82)

PHEMA_PI3HV
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340

NEURAMINIDASE
(STRAIN TEX/12677/83)

PHEMA_PI3HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340

NEURAMINIDASE
(STRAIN WASH/641/79)

PHEMA_PI3HX
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340

NEURAMINIDASE
(STRAIN WASH/1511/73)

PHEMA_PI4HA
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 4A
50-67

NEURAMINIDASE
VIRUS (STRAIN TOSHIBA)

PHEMA_RINDK
HEMAGGLUTININ-
RINDERPEST VIRUS (STRAIN
368-383

NEURAMINIDASE
KABETE O)

PHEMA_RINDL
HEMAGGLUTININ-
RINDERPEST VIRUS (STRAIN L)
4-30

NEURAMINIDASE

PHEMA_SEND5
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN Z/HOST
322-342

NEURAMINIDASE
MUTANTS)

PHEMA_SENDF
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN FUSHIMI)
322-342

NEURAMINIDASE

PHEMA_SENDH
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN HARRIS)
322-342

NEURAMINIDASE

PHEMA_SENDJ
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN HVJ)
322-342

NEURAMINIDASE

PHEMA_SENDZ
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN Z)
322-342

NEURAMINIDASE

PHEMA_SV41
HEMAGGLUTININ-
SIMIAN VIRUS 41
55-73
85-102
107-132

NEURAMINIDASE

PHEMA_SV5
HEMAGGLUTININ-
SIMIAN VIRUS 5 (STRAIN W3)
7-28
84-101
379-400

NEURAMINIDASE

PHEMA_SV5CM
HEMAGGLUTININ-
SIMIAN VIRUS 5 (ISOLATE
7-28
84-101
379-400

NEURAMINIDASE
CANINE/CP1−)

PHEMA_SV5CP
HEMAGGLUTININ-
SIMIAN VIRUS 5 (ISOLATE
7-28
84-101
379-400

NEURAMINIDASE
CANINE/CP1+)

PHEMA_SV5LN
HEMAGGLUTININ-

7-28
84-101
379-400

NEURAMINIDASE

PHEMA_VACCC
HEMAGGLUTININ
VACCINIA VIRUS (STRAIN
173-192

PRECURSOR
COPENHAGEN)

PHEMA_VACCI
HEMAGGLUTININ
VACCINIA VIRUS (STRAIN IHD-J)
173-192

PRECURSOR

PHEMA_VACCT
HEMAGGLUTININ
VACCINIA VIRUS (STRAIN TIAN
173-192

PRECURSOR
TAN)

PHEMA_VACCV
HEMAGGLUTININ
VACCINIA VIRUS (STRAIN WR)
173-192

PRECURSOR

PHEMA_VARV
HEMAGGLUTININ
VARIOLA VIRUS
175-194

PRECURSOR

PHEX8_ADE02
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 2
38-61
119-140

PROTEIN PRECURSOR

PHEX8_ADE03
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 3
27-48

PROTEIN PRECURSOR

PHEX8_ADE05
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 5
38-61
119-140

PROTEIN PRECURSOR

PHEX8_ADE41
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 41
38-61
128-146

PROTEIN PRECURSOR

PHEX8_ADEM1
HEXON-ASSOCIATED
MOUSE ADENOVIRUS TYPE 1
36-52

PROTEIN PRECURSOR

PHEX9_ADE07
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 7
92-117

PROTEIN
AND 3

PHEX9_ADEC2
HEXON-ASSOCIATED
CANINE ADENOVIRUS TYPE 2
52-77

PROTEIN

PHEX9_ADENT
HEXON-ASSOCIATED
TUPAIA ADENOVIRUS
60-82

PROTEIN

PHRG_COWPX
HOST RANGE PROTEIN
COWPOX VIRUS
517-533
558-583
609-636

PI177_ASFB7
LATE PROTEIN I177L
AFRICAN SWINE FEVER VIRUS
68-83

(STRAIN BA71V)

PI196_ASFB7
LATE PROTEIN I196L
AFRICAN SWINE FEVER VIRUS
169-190

(STRAIN BA71V)

PI226_ASFB7
LATE PROTEIN I226R
AFRICAN SWINE FEVER VIRUS
60-77

(STRAIN BA71V)

PI329_ASFB7
LATE PROTEIN I329L
AFRICAN SWINE FEVER VIRUS
239-260

PRECURSOR
(STRAIN BA71V)

PI78_ASFB7
EARLY PROTEIN I78R
AFRICAN SWINE FEVER VIRUS
2-29

(STRAIN BA71V)

PIBMP_SOCMV
INCLUSION BODY MATRIX
SOYBEAN CHLOROTIC MOTTLE
97-119

PROTEIN
VIRUS

PIC18_EBV
PROBABLE PROCESSING AND
EPSTEIN-BARR VIRUS
101-123
131-153
759-777

TRANSPORT PROTEIN
(STRAIN B95-8)

PIC18_HCMVA
PROBABLE PROCESSING AND
HUMAN CYTOMEGALOVIRUS
156-176
202-222

TRANSPORT PROTEIN
(STRAIN AD169)

PIC18_HSV11
PROCESSING AND
HERPEX SIMPLEX VIRUS
8-29
45-61
122-143
751-768

TRANSPORT PROTEIN
(TYPE 1/STRAIN 17)

PIC18_HSV1A
PROCESSING AND
HERPES SIMPLEX VIRUS
8-29
45-61
122-143
751-768

TRANSPORT PROTEIN
(TYPE 1/STRAIN ANGELOTTI)

PIC18_HSV1F
PROCESSING AND
HERPES SIMPLEX VIRUS
8-29
122-143
746-763

TRANSPORT PROTEIN
(TYPE 1/STRAIN F)

PIC18_HSVB2
PROBABLE PROCESSING AND
BOVINE HERPESVIRUS TYPE 2
12-37
130-151

TRANSPORT PROTEIN
(STRAIN BMV)

PIC18_HSVEB
PROBABLE PROCESSING AND
EQUINE HERPESVIRUS TYPE 1
37-56
129-144
732-755

TRANSPORT PROTEIN

PIC18_HSVSA
PROBABLE PROCESSING AND
HERPESVIRUS SAIMIRI
27-49
51-78
647-672

TRANSPORT PROTEIN
(STRAIN 11)

PIC18_MCMVS
PROBABLE PROCESSING AND
MURINE CYTOMEGALOVIRUS
126-144
202-229
386-411

TRANSPORT PROTEIN
(STRAIN SMITH)

PIC18_PRVIF
PROBABLE PROCESSING AND
PSEUDORABIES VIRUS (STRAIN
285-307
698-718

TRANSPORT PROTEIN
INDIANA-FUNKHAUSER/BECKER)

PIC18_VZVD
PROBABLE PROCESSING AND
VARICELLA-ZOSTER VIRUS
69-88
619-639
725-744

TRANSPORT PROTEIN
(STRAIN DUMAS)

PICP0_HSV11
IMMEDIATE-EARLY PROTEIN
HERPES SIMPLEX VIRUS
668-684

(TYPE 1/STRAIN 17)

PICP0_HSV2H
VMW118 PROTEIN
HERPES SIMPLEX VIRUS
713-729

(TYPE 2/STRAIN HG52)

PICP0_PRVIF
EARLY PROTEIN 0
PSEUDORABIES VIRUS (STRAIN
82-102

INDIANA-FUNKHAUSER/BECKER)

PICP3_HSV1F
INFECTED CELL PROTEIN
HERPES SIMPLEX VIRUS
211-227

(TYPE 1/STRAIN F)

PICP4_HSV11
TRANS-ACTING
HERPES SIMPLEX VIRUS
81-98
621-637

TRANSCRIPTIONAL PROTEIN
(TYPE 1/STRAIN 17)

PICP4_HSVEB
TRANS-ACTING
EQUINE HERPESVIRUS TYPE 1
708-725
736-759

TRANSCRIPTIONAL PROTEIN
(STRAIN AB4P)

PICP4_HSVEK
TRANS-ACTING
EQUINE HERPESVIRUS TYPE 1
708-725
736-759

TRANSCRIPTIONAL PROTEIN
(STRAIN KENTUCKY A)

PICP4_HSVMG
TRANS-ACTING
MAREK'S DISEASE HERPESVIRUS
488-506
585-611
1202-1218

TRANSACTIVATOR PROTEIN
(STRAIN GA)

PICP4_VZVD
TRANS-ACTING
VARICELLA-ZOSTER VIRUS
547-563

TRANSCRIPTIONAL PROTEIN
(STRAIN DUMAS)

PIE18_PRVIF
IMMEDIATE-EARLY
PSEUDORABIES VIRUS (STRAIN
731-748

PROTEIN IE180
INDIANA-FUNKHAUSER/BECKER)

PIE18_PRVKA
IMMEDIATE-EARLY
PSEUDORABIES VIRUS
720-737

PROTEIN IE180
(STRAIN KAPLAN)

PIE63_HCMVA
TRANSCRIPTIONAL
HUMAN CYTOMEGALOVIRUS
286-304
364-383

REGULATOR IE63 HOMOLOG (
(STRAIN AD169)

PIE63_HSV1I
TRANSCRIPTIONAL
HERPES SIMPLEX VIRUS
378-394

REGULATOR IE63
(TYPE 1/STRAIN 17)

PIE63_HSV2H
TRANSCRIPTIONAL
HERPES SIMPLEX VIRUS
378-394

REGULATOR IE63
(TYPE 2/STRAIN HG52)

PIE63_HSVEB
TRANSCRIPTIONAL
EQUINE HERPESVIRUS TYPE 1
337-353
385-406

REGULATOR IE63 HOMOLOG
(STRAIN AB4P)

PIE63_HSVSA
52 KD IMMEDIATE-EARLY
HERPESVIRUS SAIMIRI
301-326

PHOSPHOPROTEIN
(STRAIN 11)

PIE68_HSV11
IMMEDIATE-EARLY
HERPES SIMPLEX VIRUS
189-205

PROTEIN IE68
(TYPE 1/STRAIN 17)

PIE68_HSVE4
IMMEDIATE-EARLY
EQUINE HERPESVIRUS TYPE 4
81-104

PROTEIN IE68

PIE68_HSVEB
IMMEDIATE-EARLY PROTEIN
EQUINE HERPESVIRUS TYPE 1
93-116

PIE68_PRVKA
IMMEDIATE-EARLY PROTEIN
PSEUDORABIES VIRUS
85-108

(STRAIN KAPLAN)

PIE68_VZVD
GENE 63/70 PROTEIN
VARICELLA-ZOSTER VIRUS
57-78

(STRAIN DUMAS)

PIR14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
117-137

(STRAIN AD169)

PKERB_AVIER
ERBB TYROSINE KINASE
AVIAN ERYTHROBLASTOSIS
64-84
297-324

TRANSFORMING PROTEIN
VIRUS

PKFES_FSVGA
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
73-88

TRANSFORMING PROT
(STRAIN GARDNER-ARNSTEIN)

PKFES_FSVST
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
2-22

TRANSFORMING PROT
(STRAIN SNYDER-THEILEN)

PKFGR_FSVGR
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
269-288

TRANSFORMING PROT
(STRAIN GARDNER-RASHEED)

PKFMS_FSVMD
FMS TYROSINE KINASE
FELINE SARCOMA VIRUS
141-159
243-263
434-450
548-563
781-801
856-877

TRANSFORMING PROTEIN
(STRAIN MCDONOUGH)

PKFPS_AVISP
TYROSINE-PROTEIN KINASE
AVIAN SARCOMA VIRUS
247-274

TRANSFORMING PROT
(STRAIN PRC11)

PKFPS_FUJSV
TYROSINE-PROTEIN KINASE
FUJINAMI SARCOMA VIRUS
259-275
346-370
400-420
587-614

TRANSFORMING PROT

PKITH_ASFB7
THYMIDINE KINASE
AFRICAN SWINE FEVER VIRUS
18-41

(STRAIN BA71V)

PKITH_EBV
THYMIDINE KINASE
EPSTEIN-BARR VIRUS
403-418
428-446

(STRAIN B95-8)

PKITH_FLDV
THYMIDINE KINASE
FISH LYMPHOCYSTIS DISEASE
96-117
252-275

VIRUS

PKITH_HSV11
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249

(TYPE 1/STRAIN 17)

PKITH_HSV1C
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249

(TYPE 1/STRAIN CL101)

PKITH_HSV1E
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249

(TYPE 1/STRAIN HFEM)

PKITH_HSV1K
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249

(TYPE 1/STRAIN KOS)

PKITH_HSV1S
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249

(TYPE 1/STRAIN SC16)

PKITH_HSV23
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
224-250
333-348

(TYPE 2/STRAIN 333)

PKITH_HSVB6
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 1
193-219
280-304

(STRAIN 6660)

PKITH_HSVBH
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 2
180-202

(STRAIN BHM-1)

PKITH_HSVBM
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 3
381-399
609-633

(STRAIN WC11)

PKITH_HSVBQ
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 1 2
194-220
282-306

(STRAIN Q3932)

PKITH_HSVE4
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 4
174-193
261-284

(STRAIN 1942)

PKITH_HSVEB
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 1
18-33
174-193
274-298

(STRAIN AB4P) AND

(ISOLATE HVS25A)

PKITH_HSVF
THYMIDINE KINASE
FELINE HERPESVIRUS
171-189

(FELID HERPESVIRUS 1)

PKITH_HSVI1
THYMIDINE KINASE
ICTALURID HERPESVIRUS 1
14-32

PKITH_HSVMR
THYMIDINE KINASE
MARMOSET HERPESVIRUS
189-215

PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI
208-232

(STRAIN 11)

PKITH_ILTVT
THYMIDINE KINASE
INFECTIOUS
183-202
208-234

LARYNGOTRACHEITIS VIRUS

(STRAIN THORNE V882)

PKITH_VZV4
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS
197-216

(ACYCLOVIR-RESISTANT

STRAIN 40A2)

PKITH_VZV7
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS
197-216

(ACYCLOVIR-RESISTANT

STRAIN 7-1-3)

PKITH_VZVD
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS
197-216

(STRAIN DUMAS)

PKITH_VZVG
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS
197-216

(ACYCLOVIR-RESISTANT

STRAIN GK)

PKITH_VZVW
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS (VZV)
197-216

PKKIT_FSVHZ
KIT TYROSINE KINASE
FELINE SARCOMA VIRUS
192-214
276-297

TRANSFORMING PROTEIN
(STRAIN HARDY-ZUCKERMAN 4)

PKR15_HSVI1
GENE 15 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
151-167
358-374

PKR16_HSVI1
GENE 16 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
197-217
286-311

PKR1_HSVI1
SERINE/THREONINE-PROTEIN
HERPES SIMPLEX VIRUS
280-296
358-377

KINASE
(TYPE 1/STRAIN 17)

PKR1_HSV2
SERINE/THREONINE-PROTEIN
HERPES SIMPLEX VIRUS
276-296
358-377

KINASE
(TYPE 2)

PKR1_HSVEB
SERINE/THREONINE-PROTEIN
EQUINE HERPESVIRUS TYPE 1
289-307

KINASE
(STRAIN AB4P)

PKR1_HSVEK
SERINE/THREONINE-PROTEIN
EQUINE HERPESVIRUS TYPE 1
289-307

KINASE
(STRAIN KENTUCKY A)

PKR1_VZVD
SERINE/THREONINE-PROTEIN
VARICELLA-ZOSTER VIRUS
179-197

KINASE
(STRAIN DUMAS)

PKR2_EBV
PROBABLE
EPSTEIN-BARR VIRUS
196-211
313-338

SERINE/THREONINE-
(STRAIN B95-8)

PROTEIN KINASE

PKR2_HSVI1
PROBABLE
HERPES SIMPLEX VIRUS
247-267

SERINE/THREONINE-
(TYPE 1/STRAIN 17)

PROTEIN KINASE

PKR2_HSVEB
PROBABLE
EQUINE HERPESVIRUS TYPE 1
317-339
441-462

SERINE/THREONINE-
(STRAIN AB4P)

PROTEIN KINASE

PKR2_PRVN3
SERINE/THREONINE-
PSEUDORABIES VIRUS
164-185
282-305

PROTEIN KINASE 2
(STRAIN NIA-3)

PKR2_VZVD
PROBABLE
VARICELLA-ZOSTER VIRUS
116-131
226-247
354-373

SERINE/THREONINE-
(STRAIN DUMAS)

PROTEIN KINASE

PKR73_HSVI1
GENE 73 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
841-858

PKR74_HSVI1
GENE 74 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
359-380
548-575

PKRB1_VACCC
30 KD PROTEIN KINASE
VACCINIA VIRUS
199-214

HOMOLOG
(STRAIN COPENHAGEN)

PKRB1_VACCV
30 KD PROTEIN KINASE
VACCINIA VIRUS
199-214

HOMOLOG
(STRAIN WR)

PKRB1_VARV
30 KD PROTEIN KINASE
VARIOLA VIRUS
199-214

HOMOLOG

PKRF1_SFVKA
POSSIBLE PROTEIN KINASE
SHOPE FIBROMA VIRUS
83-98

C20
(STRAIN KASZA)

PKRF1_VACCC
POSSIBLE PROTEIN KINASE
VACCINIA VIRUS
85-100

F10
(STRAIN COPENHAGEN)

PKRF1_VACCP
POSSIBLE PROTEIN KINASE
VACCINIA VIRUS
52-67

F10
(STRAIN L-IVP)

PKRF1_VARV
POSSIBLE PROTEIN KINASE
VARIOLA VIRUS
85-100

F10

PKROS_AVISU
ROS TYR KINASE
AVIAN SARCOMA VIRUS
6-29
202-223
284-305

TRANSFORMING PROTEIN
(STRAIN UR2)

PKRYK_AVIR3
TYR-PROTEIN KINASE
AVIAN RETROVIRUS RPL30
154-172
221-241

TRANSFORMING PROTEIN R

PKSEA_AVIET
TYR-PROTEIN KINASE
AVIAN ERYTHROBLASTOSIS
158-177

TRANSFORMING PROTEIN SE
VIRUS (STRAIN S13)

PKSRC_AVIS2
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377

TRANSFORMING PROTEIN SR
(STRAIN PR2257)

PKSRC_AVISR
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377

TRANSFORMING PROTEIN SR
(STRAIN RASV1441)

PKSRC_AVISS
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377

TRANSFORMING PROTEIN SR
(STRAIN S1)

PKSRC_AVIST
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377

TRANSFORMING PROTEIN SR
(STRAIN S2)

PKSRC_RSVH1
TYR-PROTEIN KINASE
ROUS SARCOMA VIRUS
361-377

TRANSFORMING PROTEIN SR
(STRAIN H-19)

PKSRC_RSVP
TYR-PROTEIN KINASE
ROUS SARCOMA VIRUS
361-377

TRANSFORMING PROTEIN SR
(STRAIN PRAGUE C)

PKSRC_RSVPA
TYR-PROTEIN KINASE
ROUS SARCOMA VIRUS
358-374

TRANSFORMING PROTEIN SR
(STRAIN PA101T)

PKSRC_RSVSR
TYR-PROTEIN KINASE
ROUS SARCOMA VIRUS
361-377

TRANSFORMING PROTEIN SR
(STRAIN SCHMIDT-RUPPIN)

PKYES_AVISY
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377

TRANSFORMING PROTEIN Y
(STRAIN Y73)

PL100_ADE02
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
489-511

PL100_ADE05
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
489-511

PL100_ADE41
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
458-480

PL52_ADE02
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
237-259

PL52_ADE05
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
237-259

PLEC1_FOWPM
HEPATIC LECTIN HOMOLOG
FOWLPOX VIRUS (ISOLATE
2-26

HP-438(MUNICH))

PLMP1_EBV
LATENT MEMBRANE
EPSTEIN-BARR VIRUS
20-43
79-100

PROTEIN 1
(STRAIN B95-8)

PLMP1_EBVC
LATENT MEMBRANE
EPSTEIN-BARR VIRUS
20-43
79-100

PROTEIN 1
(STRAIN B95-8)

PLMP1_EBVR
LATENT MEMBRANE
EPSTEIN-BARR VIRUS
20-43
79-100

PROTEIN 1
(STRAIN B95-8)

PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS
181-196
204-226
267-288
291-315
346-369
390-410

(STRAIN B95-8)

PMCEL_SFVKA
MRNA CAPPING ENZYME,
SHOPE FIBROMA VIRUS
244-260
556-578
679-699

LARGE SUBUNIT
(STRAIN KASZA)

PMCEL_VACCC
MRNA CAPPING ENZYME,
VACCINIA VIRUS
81-102
265-282
289-312
687-707

LARGE SUBUNIT
(STRAIN COPENHAGEN)

PMCEL_VACCV
MRNA CAPPING ENZYME,
VACCINIA VIRUS (STRAIN WR)
81-102
265-282
289-312
687-707

LARGE SUBUNIT

PMCEL_VARV
MRNA CAPPING ENZYME,
VARIOLA VIRUS
81-102
265-282
289-312
687-707

LARGE SUBUNIT

PMCE_ASFB7
MRNA CAPPING ENZYME
AFRICAN SWINE FEVER VIRUS
217-243

(STRAIN BA71V)

PMCE_REOVD
MRNA CAPPING ENZYME
REOVIRUS (TYPE 3/STRAIN
358-384
567-588
714-741

DEARING)

PMOVP_CGMVS
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE
157-172

MOSAIC VIRUS (WATERMELON

STRAIN S)

PMOVP_CGMVW
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE
157-172

MOSAIC VIRUS (WATERMELON

STRAIN)

PMOVP_ORSV
MOVEMENT PROTEIN
ODONTOGLOSSUM RINGSPOT
49-74
178-205

VIRUS

PMOVP_PPMVS
MOVEMENT PROTEIN
PEPPER MILD MOTTLE VIRUS
25-50
186-201

(STRAIN SPAIN)

PMOVP_TMGMV
MOVEMENT PROTEIN
TOBACCO MILD GREEN MOSAIC
186-201

VIRUS (TMV STRAIN U2)

PMOVP_TMVCO
MOVEMENT PROTEIN
TOBACCO MOSAIC VIRUS
88-107
156-171

(STRAIN COWPEA)

PMTC1_CHVN1
MODIFICATION
CHOLRELLA VIRUS NC-1A
129-156

METHYLASE CVIBI

PMTC2_CHVP1
MODIFICATION
PARAMECIUM BURSARIA
72-94

METHYLASE CVIAII
CHLORELLA VIRUS 1 (

PMTC3_CHVN1
MODIFICATION
CHLORELLA VIRUS NC-1A
177-192
265-286

METHYLASE CVIBIII

PMYBE_AVILE
P135-GAG-MYB-ETS
AVIAN LEUKEMIA VIRUS E26
104-124

TRANSFORMING PROTEIN (

PMYB_AVIMB
MYB TRANFORMING PROTEIN
AVIAN MYELOBLASTOSIS VIRUS
218-238
301-326

PNCAP_AINOV
NUCLEOCAPSID PROTEIN
AINO VIRUS
159-181

PNCAP_BUNLC
NUCLEOCAPSID PROTEIN
BUNYAVIRUS LA CROSSE
84-99

PNCAP_BUNSH
NUCLEOCAPSID PROTEIN
BUNYAVIRUS SNOWSHOE HARE
84-99

PNCAP_CDVO
NUCLEOCAPSID PROTEIN
CANINE DISTEMPER VIRUS
31-50

(STRAIN ONDERSTEPOORT)

PNCAP_FIPV
NUCLEOCAPSID PROTEIN
FELINE INFECTIOUS PERITONITIS
57-74

VIRUS (STRAIN 79-1146)

PNCAP_HANTV
NUCLEOCAPSID PROTEIN
HANTAAN VIRUS (STRAIN 76-118)
317-342

PNCAP_HAZVJ
NUCLEOCAPSID PROTEIN
HAZARA VIRUS (ISOLATE JC280)
428-446

PNCAP_IHNV
NUCLEOCAPSID PROTEIN
INFECTIOUS HEMATOPOIETIC
110-137
239-265

NECROSIS VIRUS (STRAIN

ROUND BUT)

PNCAP_INSV
NUCLEOCAPSID PROTEIN
IMPATIENS NECROTIC SPOT
155-179

VIRUS

PNCAP_MEASE
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN
40-59

EDMONSTON)

PNCAP_MEASH
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN HALLE)
40-59

PNCAP_MEASY
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN
40-59

YAMAGATA-1)

PNCAP_MUMP1
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN SBL-1)
156-178

PNCAP_MUMPM
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN
156-178

MIYAHARA VACCINE)

PNCAP_PHV
NUCLEOCAPSID PROTEIN
PROSPECT HILL VIRUS
36-58
218-236
256-277
321-346

PNCAP_PI1HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
42-58
86-102

(STAIN C39)

PNCAP_PI1HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
42-58
86-102

(STRAIN WASHINGTON/1957)

PNCAP_PI3B
NUCLEOCAPSID PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
163-184

PNCAP_PI3H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
163-184

(STRAIN NIH 47885)

PNCAP_PUUMH
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN
36-58
321-346

HALLNAS B1)

PNCAP_PUUMS
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN
36-58
218-236
321-346

SOTKAMO)

PNCAP_RABVA
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN AVO1)
299-322

PNCAP_RABVP
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN PV)
299-322

PNCAP_RABVS
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN SAD B19)
299-322

PNCAP_RVFVZ
NUCLEOCAPSID PROTEIN
RIFT VALLEY FEVER VIRUS
158-180

(STRAIN ZH-548 M12)

PNCAP_SEND5
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z/
29-51
86-102

HOST MUTANTS)

PNCAP_SENDE
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN ENDERS)
42-58
86-102

PNCAP_SENDH
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN HARRIS)
42-58
86-102

PNCAP_SENDZ
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z)
29-51
86-102

PNCAP_SEOUS
NUCLEOCAPSID PROTEIN
SEOUL VIRUS (STRAIN SR-11)
112-138
317-342

PNCAP_SFSV
NUCLEOCAPSID PROTEIN
SANDFLY FEVER SICILIAN VIRUS
156-181

PNCAP_TACV
NUCLEOCAPSID PROTEIN
TACARIBE VIRUS
219-241

PNCAP_UUK
NUCLEOCAPSID PROTEIN
UUKUNIEMI VIRUS
167-189

PNCAP_VHSV0
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC
240-266

SEPTICEMIA VIRUS (STRAIN 07-71)

PNCAP_VHSVM
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC
240-266

SPETICEMIA VIRUS (STRAIN

MAKAH)

PNCAP_VSVJO
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
64-80

SEROTYPE NEW JERSEY/

STRAIN OG)

PNCAP_VSVSJ

PNEF_HV2RO
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
110-129

VIRUS TYPE 2 (ISOLATE ROD)

PNEF_HV2ST
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
106-128

VIRUS TYPE 2 (ISOLATE ST)

PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29

A/BLACK DUCK/AUSTRALIA/

702/78)

PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24

A/CHILE/1/83)

PNRAM_IADA1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24

A/DUCK/ALBERTA/28/76)

PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29

A/DUCK/GERMANY/49)

PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29
301-317

A/FOWL PLAGUE VIRUS/

WEYBRIDGE)

PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
299-315

A/EQUINE/COR/16/74)

PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29

A/EQUINE/KENTUCKY/1/81)

PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24

A/KIEV/59/79)

PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24

A/LENINGRAD/54/1)

PNRAM_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-30

A/MEMPHIS/1/71H-A/

BELLAMY/42N)

PNRAM_IAPAR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-30

A/PARROT/ULSTER/73)

PNRAM_IAPUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-30

A/PUERTO RICO/8/34)

PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29

A/RUDDY TURNSTONE/

NEW JERSEY/60/)

PNRAM_IASH2
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29

A/SHEARWATER/AUSTRALIA/72)

PNRAM_IATKR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24
56-77

A/TURKEY/OREGON/71)

PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29

A/TERN/AUSTRALIA/G70C/75)

PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24

A/USSR/90/77)

PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29

A/WHALE/MAINE/1/84)

PNRAM_IAWIL
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-30

A/WILSON-SMITH/33)

PNRAM_INBBE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/BEIJING/1/87)

PNRAM_INBHK
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/HONG KONG/8/73)

PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/LEE/40)

PNRAM_INBLN
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/LENINGRAD/179/86)

PNRAM_INBMD
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/MARYLAND/59)

PNRAM_INBMF
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/MEMPHIS/3/89)

PNRAM_INBOR
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/OREGON/5/80)

PNRAM_INBSI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/SINGAPORE/222/79)

PNRAM_INBUS
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/USSR/100/83)

PNRAM_INBV1
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20

B/VICTORIA/3/85)

PNS1_SIDEV
PROBABLE NONSTRUCTURAL
BOMBYX DENSONUCLEOSIS
135-151

PROTEIN PRECURSO
VIRUS

PNS2_SIDEV
PROBABLE STRUCTURAL
BOMBYX DENSONUCLEOSIS
2-26
196-221
783-806

PROTEIN PRESURSO
VIRUS

PNS3_SIDEV
PROBABLE NONSTRUCTURAL
BOMBYX DENSONUCLEOSIS
60-78

PROTEIN PRECURSOR
VIRUS

PNSS_TSWVB
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
80-105
431-455

(BRAZILIAN IOSLOATE CPNH1/

BR-01)

PNSS_TSWVL
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
80-105
436-458

(STRAIN L3)

PNTP1_VACCC
NUCLEOSIDE
VACCINIA VIRUS (STRAIN
20-45
387-403

TRIPHOSPHATASE I
COPENHAGEN)

PNTP1_VACCV
NUCLEOSIDE
VACCINIA VIRUS (STRAIN WR)
20-45
387-403

TRIPHOSPHATASE I

PNTP1_VARV
NUCLEOSIDE
VARIOLA VIRUS
293-309

TRIPHOSPHATASE I

PP100_HSV6U
MAJOR ANTIGENIC
HERPES SIMPLEX VIRUS (TYPE 6/
182-204
250-270
344-366

STRUCTURAL PROTEIN
STRAIN UGANDA-1102)

PPAP2_FOWPV
POLY(A) POLYMERASE
FOWLPOX VIRUS
79-100

REGULATORY SUBUNIT

PPAP2_MYXVA
POLY(A) POLYMERASE
MYXOMA VIRUS (ISOLATE AUST/
101-116

REGULATORY SUBUNIT
URIARRA/VERG-86/1)

PPAP2_VACCC
POLY(A) POLYMERASE
VACCINIA VIRUS (STRAIN
101-116

REGULATORY SUBUNIT
COPENHAGEN)

PPAP2_VACCV
POLY(A) POLYMERASE
VACCINIA VIRUS (STRAIN WR)
101-116

REGULATORY SUBUNIT

PPAP2_VARV
POLY(A) POLYMERASE
VARIOLA VIRUS
101-116

REGULATORY SUBUNIT

PPCNA_NPVAC
PROLIFERATING CELL
AUTOGRAPHA CALIFORNICA
67-89
227-244

NUCLEAR ANTIGEN
NUCLEAR POLYHEDROSIS VIRUS

PPE21_NPVOP
21 2 KD PROTEIN IN PE
ORGYIA PSEUDOTSUGATA
117-139

5′REGION
MULTICAPSID POLYHEDROSIS

VIRUS

PPE25_NPVAC
25 1 KD PROTEIN IN PE-P26
AUTOGRAPHA CALIFORNICA
57-83

INTERGENIC REGION
NUCLEAR POLYHEDROSIS VIRUS

PPE38_NPVAC
MAJOR IMMEDIATE EARLY
AUTOGRAPHA CALIFORNICA
17-33

PROTEIN
NUCLEAR POLYHEDROSIS VIRUS

PPEN3_ADE02
PENTON PROTEIN
HUMAN ADENOVIRUS TYPE 2
171-195

PPEN3_ADE05
PENTON PROTEIN
HUMAN ADENOVIRUS TYPE 5
171-195

PPEN3_ADEGX
PENTON PROTEIN
AVIAN ADENOVIRUS GAL10
194-214
307-324

(STRAIN SA2)

PPIV2_ADE07
MATURATION PROTEIN
HUMAN ADENOVIRUS TYPE 7
412-431

PPIV2_ADEM1
MATURATION PROTEIN
MOUSE ADENOVIRUS TYPE 1
409-428

PPOL1_BAYMG
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
739-755
835-856
1072-1094
1889-1910

(GERMAN ISOLATE)

PPOL1_BAYMJ
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
739-755
835-856
1072-1094
1465-1485
1888-1909

(JAPANESE STRAIN II-1)

PPOL1_GCMV
RNA1 POLYPROTEIN
HUNGARIAN GRAPEVINE
691-717
1040-1062
1116-1143

CHROME MOSAIC VIRUS

PPOL1_GFLV
RNA1 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
380-396
477-503
545-564
1079-1098
1149-1171
1341-1356
1761-1785
1821-1848
2020-2044

PPOL1_TBRVS
RNA1 POLYPROTEIN
TOMATO BLACK RING VIRUS
1132-1159

(STRAIN S)

PPOL2_ARMV
RNA2 POLYPROTEIN
ARABIS MOSAIC VIRUS
129-150
243-266
346-367

PPOL2_BAYMG
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
325-350
463-485

(GERMAN ISOLATE)

PPOL2_BAYMJ
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
325-350
463-485

(JAPANSES STRAIN II-1)

PPOL2_GFLV
RNA2 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
808-829
1021-1045

PPOL2_TBRVS
RNA2 POLYPROTEIN
TOMATO BLACK RING VIRUS
425-446
541-557
856-876
1203-1223

(STRAIN S)

PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS
316-340
427-448
1527-1554

(ISOLATE RASPBERRY)

PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS
1833-1859

(STRAIN VG-5-27)

PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
627-653
943-965
1119-1134
1282-1297
1363-1387
1868-1892
2460-2487
2608-2628
2883-2898

(ISOLATE NADL)

3141-3161
3220-3241
3856-3871
3967-3986

PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
627-653
943-965
1119-1134
1138-1163
1189-1205
1282-1297
1363-1387
1778-1802
2370-2397

(STRAIN SD-1)

2518-2538
2741-2766
2793-2808
3766-3781

PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21
850-867

(STRAIN COE)

PPOLG_COXA3
GENOME POLYPROTEIN
COXSACKIEVIRUS A23
67-92

(ECHO 9 VIRUS)

PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9
1491-1517
1601-1626

(STRAIN GRIGGS)

PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
1472-1498
1582-1607

PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKEIVIRUS B3
228-255
1475-1501
1585-1610

PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
821-846
1473-1499
1583-1608

PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
1475-1501
1585-1610

PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN
918-943
1111-1138
1211-1236
1243-1260
1612-1628
2222-2248
2348-2365
2401-2426
3050-3069

SINGAPORE S275/90)

PPOLG_DEN1W
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN
919-944
1112-1139

WESTERN PACIFIC)

PPOLG_DEN23
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (ISOLATE
336-354

MALAYSIA M3)

PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
848-868
919-944
1112-1139
1244-1261
1283-1301
1613-1629
2293-2318
2347-2364
2405-2425

16681)
2700-2726

PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
848-868
919-944
1112-1139
1244-1261
1283-1301
1376-1396
1613-1629
2293-2318
2347-2364

16681-PDK53)

2405-2425
2700-2726

PPOLG_DEN2D
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
848-868
919-944

(STRAIN D2-04)

PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
848-868
919-944
1112-1139
1244-1261
1176-1396
1613-1629
2293-2318
2347-2364
2405-2425

(STRAIN JAMAICA)
2700-2726

PPOLG_DEN2N
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
100-120
171-196
364-391

(STRAIN NEW GUINEA C)

PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
919-944
1112-1139
1244-1261
1283-1301
1376-1396
1613-1629
2290-2315
2344-2361
2402-2422

(STRAIN PR159/51)
2697-2723

PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
639-664
832-859
964-981
1203-1219

(STRAIN TONGA 1974)

PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
917-942
1210-1228
1242-1259
1174-1194
1611-1627
2141-2162
2221-2247
2146-2361
2199-2424

2698-2724
3048-3067

PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
1209-1227
1241-1258
1611-1627
2220-2246
2342-2359
2400-2420
3045-3064

PPOLG_EC11G
GENOME POLYPROTEIN
ECHOVIRUS 11 (STRAIN GREGORY)
664-690
774-799

PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
225-247
558-578
1194-1215
1650-1667

PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
560-580
1120-1141
1196-1217

(STRAIN EMC-B

NONDIABETOGENI)

PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
560-580
1120-1141
1196-1217

(STRAIN EMC-D DIABETOGENIC)

PPOLG_ENMG3
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCAR-
560-580

DITIS VIRUS (STRAIN 37A)

PPOLG_ENMGO
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCAR-
493-513

DITIS VIRUS

PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
121-141
984-1003
1036-1057
1396-1411
1465-1487
1764-1791

VIRUS (STRAIN A10-61)

PPOLG_FMDV5
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
162-187

VIRUS (STRAIN A5)

PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
121-140
984-1003
1036-1057
1396-1411
1465-1487
1763-1790

VIRUS (STRAIN A12)

PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
121-141
984-1003
1036-1057
1396-1411
1465-1487
1763-1790

VIRUS (STRAINS O1K AND O1BFS)(

PPOLG_FMDVS
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
301-320

VIRUS (STRAIN C1-SANTA PAU

[C-S8])

PPOLG_FMDVT
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
121-141
979-998

VIRUS (STRAIN C1)

PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
112-133
143-169
619-640
683-699
833-857
2327-2347
2442-2457
2837-2859

PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN
102-128
1143-1163
1282-1301
1778-1802
2370-2397
2518-2538
3131-3152
3737-3753
3767-3782

ALFORT)

3877-3893

PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN
102-128
1143-1163
1282-1301
1778-1802
2370-2397
2518-2538
3131-3152
3737-3753
3767-3782

BRESCIA)

3877-3893

PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
2327-2347
2441-2456
2836-2858
2988-3007

(ISOLATE BK)

PPOLG_HCVE1
GENOME POLYPROTEIN
HEPATITIS C VIRUS
27-53

(ISOLATE EC1)

PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
833-853
863-880
2442-2457
2837-2859

(ISOLATE H)

PPOLG_HCVH4
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169

(ISOLATE HCV-476)

PPOLG_HCVH7
GENOME POLYPROTEIN
HEPATITIS C VIRUS
15-41

(ISOLATE HCT27)

PPOLG_HCVH8
GENOME POLYPROTEIN
HEPATITIS C VIRUS
27-53

(ISOLATE HCT18)

PPOLG_HCVHK
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169

(ISOLATE HCV-KF)

PPOLG_HCVJ2
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169

(ISOLATE HC-J2)

PPOLG_HCVJ5
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
623-644
687-703

(ISOLATE HC-J5)

PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
623-644
687-703
837-861
1827-1853
2327-2347
2859-2881
3011-3030

(ISOLATE HC-J6)

PPOLG_HCVJ7
GENOME POLYPROTEIN
HEPATITIS C VIRUS
143-169
623-644
687-703

(ISOLATE HC-J7)

PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
687-703
837-861
867-884
1172-1188
1827-1853
2859-2881
3011-3030

(ISOLATE HC-J8)

PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
833-857
863-880
2327-2347
2836-2858
2988-3007

(ISOLATE JAPANESE)

PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
833-857
2327-2347
2441-2456
2836-2858

(ISOLATE HC-JT)

PPOLG_HCVTH
GENOME POLYPROTEIN
HEPATITIS C VIRUS
27-53

(ISOLATE TH)

PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
833-857
2327-2347
2441-2456
2836-2858
2988-3007

(ISOLATE TAIWAN)

PPOLG_HPAV1
GENOME POLYPROTEIN
HEPATITIS A VIRUS
303-323

(STRAIN LCDC-1)

PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS
401-428
799-819
1195-1210
1687-1708
2068-2092

(STRAIN 24A)

PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1687-1708
2008-2033
2068-2092

(STRAIN 43C)

PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1687-1708
2008-2033
2068-2092

(STAIN 18F)

PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819

(STRAIN CR326)

PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS
778-798

(STRAIN GA76)

PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1688-1709
2009-2034
2069-2093

(STRAIN HM-175)

PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1688-1709
2009-2034
2069-2093

(STRAIN LA)

PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1688-1709
2009-2034
2069-2093

(STRAIN MBB)

PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
1199-1214
1690-1711
2012-2037
2072-2096

(STRAIN AGM-27)

PPOLG_HRV14
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14 (HRV-14)
1383-1406
1962-1982

PPOLG_HRV1A
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1A (HRV-1A)
361-379
547-562

PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B (HRV-1B)
386-404
572-587
859-876
1029-1052
1453-1478
1625-1641
1816-1842
1941-1961

PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2 (HRV-2)
569-584
694-713
1022-1045
1446-1469
1618-1634
1809-1835
1843-1866

PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89 (HRV-89)
576-591
1038-1061
1229-1253
1332-1358
1460-1485
1632-1648
1823-1849
1948-1968

PPOLG_HUBV7
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 70
1492-1515

(STRAIN J670/71)

PPOLG_IBDVO
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
905-922

DISEASE VIRUS (STRAIN OH)

PPOLG_JAEV1
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
938-963
1306-1325
1642-1658
2245-2270
2326-2351
2462-2481

(STRAIN SA-14)

PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
938-963
1306-1325
1642-1658
2245-2270
2326-2351
2462-2481

(STRAIN SA(V))

PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
938-963
1306-1325
1642-1658
2245-2270
2326-2351
2462-2481

(STRAIN JAOARS982)

PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
866-891
1234-1253

(STRAIN NAKAYAMA)

PPOLG_KUNJM
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
561-576
935-960
1307-1326
1643-1659
2246-2271
2327-2352
2440-2460
2463-2483
2641-2658

2798-2814

PPOLG_LANVT
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
67-89
527-551
736-756
835-862
1157-1178
1519-1544
1630-1653
2158-2182
2230-2257

2366-2387
2424-2451
2766-2784

PPOLG_LANVY
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN
67-89
527-551

YELANTSEV)

PPOLG_LIV
GENOME POLYPROTEIN
LOUPING ILL VIRUS (L1)
67-89
527-551
835-862

PPOLG_LIVSB
GENOME POLYPROTEIN
LOUPING ILL VIRUS (STRAIN
247-271

SB 526)

PPOLG_MCFA
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT
120-137
1174-1199
1402-1428
1788-1805
1872-1887
2012-2029
2810-2827

(CFA FLAVIVIRUS)

PPOLG_MDMV
GENOME POLYPROTEIN
MAIZE DWARF MOSAIC VIRUS
39-56

PPOLG_MVEV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS
331-347
563-578
937-962
1305-1324
1523-1548
1585-1602
1641-1657

VIRUS

PPOLG_OMV
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
90-110
111-126
678-696
898-914

PPOLG_PEMVC
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS
690-717
826-846
1009-1034
1301-1348
1455-1482
1484-1500
1676-1697
1921-1945
2002-2022

(CALIFORNIA ISOLATE)

PPOLG_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1
1409-1432

(STRAIN MAHONEY)

PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1
1410-1433

(STRAIN SABIN)

PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2
1408-1431

(STRAIN LANSING)

PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2
1408-1431

(STRAIN W-2)

PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3
577-594
1407-1430

(STRAIN 23127)

PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3
577-594
1407-1430

(STRAINS P3/LEON/37 AND

P3/LEON 12A[1]B)

PPOLG_PPVD
GENOME POLYPROTEIN
PLUM POX POTYVIRUS
153-178
551-571
714-741
1098-1115
1468-1495
1497-1513
2606-2624
3084-3106

(STRAIN D)

PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS
981-999
1461-1483

(STRAIN EL AMAR)

PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS
153-178
713-740
1097-1114
1467-1494
1496-1512
2605-2623
3068-3090

(ISOLATE NAT)

PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS
153-178
713-740
1097-1114
1467-1494
1496-1512
2605-2623
3083-3105

(STRAIN RANKOVIC)

PPOLG_PRSVH
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
272-290

(STRAIN P/MUTANT HA)

PPOLG_PRSVP
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
163-181

(STRAIN P/MUTANT HA-5-1)

PPOLG_PRSVW
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
163-181

(STRAIN W)

PPOLG_PSBMV
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS
47-62
251-268
339-357
654-674
981-1001
1411-1428
1565-1592
2708-2726

(STRAIN DPD1)

PPOLG_PVYC
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN C)
755-776

PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y
755-776
964-982
1010-1036
1109-1125
1456-1483
1485-1501
1677-1698
1922-1946
2588-2606

(STRAIN HUNGARIAN)

3004-3026

PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N)
755-776
964-982
1010-1036
1109-1125
1456-1483
1485-1501
1677-1698
1922-1946
2590-2608

PPOLG_PVYO
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN O)
755-776

PPOLG_PYFV1
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS
592-616
1326-1353
1626-1651
1903-1924
2621-2642
2702-2729
2766-2783

(ISOLATE P-121)

PPOLG_STEVM
GENOME POLYPROTEIN
ST LOUIS ENCEPHALITIS VIRUS
1301-1324

(STRAIN MS1-7)

PPOLG_SUMVS
GENOME POLYPROTEIN
SUGARCANE MOSAIC VIRUS
39-56

(STRAIN SC)

PPOLG_SVDVH
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE
1475-1501
1585-1610

VIRUS (STRAIN H/3 '76)

PPOLG_SVDVU
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE
1475-1501
1585-1610

VIRUS (STRAIN UKG/27/72)

PPOLG_TBEVS
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS
67-89
527-551
1363-1378
1519-1544
1630-1653
1740-1761
2230-2257
2366-2387
2765-2783

VIRUS (STRAIN SOFJIN)

PPOLG_TBEVW
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS
67-89
527-551
835-862
1519-1544
1630-1653
2230-2257
2366-2387
2766-2784

VIRUS (WESTERN SUBTYPE)

PPLG_TEV
GENOME POLYPROTEIN
TOBACCO ETCH VIRUS (TEV)
827-853
953-980
1016-1042
1114-1130
1307-1324
1490-1506

PPOLG_TMEVB
GENOME POLYPROTEIN
THEILER'S MURINE
924-941
1074-1095
1119-1140
1520-1546
1658-1677

ENCEPHALOMYELITIS VIRUS

(STRAIN BEAN 8386)

PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE
1072-1093
1117-1138
1518-1544
1656-1675

ENCEPHALOMYELITIS VIRUS

(STRAIN DA)

PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE
645-670
924-941
1074-1095
1119-1140
1520-1546
1658-1677

ENCEPHALOMYELITIS VIRUS

(STRAIN GDV11)

PPOLG_TUMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS
23-39
970-991
1138-1156
1573-1595

PPOLG_TVMV
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS
404-428
497-517
660-687
850-866
967-992
1257-1274
2537-2562

PPOLG_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
198-218

PPOLG_WNV
GENOME POLYPROTEIN
WEST NILE VIRUS
557-572
931-956
1303-1322
1639-1655
2240-2267
2324-2349
2437-2457
2638-2655
2795-2811

PPOLG_YEFV1
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
74-95
1157-1179
1228-1248
1385-1405
1495-1511
1625-1641
1761-1778
2229-2254

(STRAIN 17D)

PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
74-95
1157-1179
1228-1248
1385-1405
1495-1511
1625-1641
1761-1778
2229-2254

(STRAIN PASTEUR 17D-204)

PPOLG_YEFV8
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
74-95

(STRAIN 1899/81)

PPOLH_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1
1410-1433

(STRAIN MAHONEY)

PPOLN_EEVVT
NONSTRUCTURAL
VENEZUELAN EQUINE
90-107
235-254
613-634
1001-1018
1153-1178
1923-1939
2129-2144
2201-2221

POLYPROTEIN
ENCEPHALITIS VIRUS (STRAIN

TRINIDAD DON)

PPOLN_FCVC6
NON-STRUCTURAL
FELINE CACICIVIRUS (STRAIN
443-469
748-766
902-923
1069-1088

POLYPROTEIN
CF1/68 FIV)

PPOLN_FCVF4
NON-STRUCTURAL
FELINE CACICIVIRUS (STRAIN
300-326

POLYPROTEIN
JAPANESE F4)

PPOLN_FCVF9
NON-STRUCTURAL
FELINE CACICIVIRUS (STRAIN F9)
171-186
262-283
919-945
1224-1242
1378-1399
1545-1564

POLYPROTEIN

PPOLN_HEVBU
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN
250-266
1274-1291

POLYPROTEIN
BURMA)

PPOLN_HEVME
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN
250-266
1272-1289

POLYPROTEIN
MEXICO)

PPOLN_HEVMY
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN
250-266
1274-1291

POLYPROTEIN
MYANMAR)

PPOLN_HEVPA
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN
249-265
1273-1290

POLYPROTEIN
PAKISTAN)

PPOLN_MIDDV
NONSTRUCTURAL
MIDDELBURG VIRUS
488-512
628-643
700-720

POLYPROTEIN

PPOLN_ONNVG
NONSTRUCTURAL
O'NYONG-NYONG VIRUS
90-107
613-634
2148-2163
2220-2240

POLYPROTEIN
(STRAIN GULU)

PPOLN_RHDV
NON-STRUCTURAL
RABBIT HEMORRHAGIC DISEASE
156-180
270-292
299-320
479-502
1330-1353
1429-1455
1471-1490

POLYPROTEIN
VIRUS

PPOLN_RHDV3
NON-STRUCTURAL
RABBIT HEMORRHAGIC DISEASE
115-135

POLYPROTEIN
VIRUS (STRAIN V-351)

PPOLN_RRVN
NONSTRUCTURAL
ROSS RIVER VIRUS
89-106
611-632
2113-2128
2185-2205

POLYPROTEIN
(STRAIN NB5092)

PPOLN_RRVT
NONSTRUCTURAL
ROSS RIVER VIRUS
782-797
854-874

POLYPROTEIN
(STRAIN T48)

PPOLN_RUBVT
NONSTRUCTURAL
RUBELLA VIRUS (STRAIN
14-37
97-113
263-279
670-694
901-918
1374-1393
2035-2052

POLYPROTEIN
THERIEN)

PPOLN_SFV
NONSTRUCTURAL
SEMLIKI FOREST VIRUS
91-108
617-643
2062-2077
2134-2154

POLYPROTEIN

PPOLN_SINDO
NONSTRUCTURAL
SINDBIS VIRUS (SUBTYPE
620-646
1123-1150
1790-1814
2148-3163
2220-2240

POLYPROTEIN
OCKELBO/STRAIN EDSBYN 82-5)

PPOLN_SINDV
NONSTRUCTURAL
SINDBIS VIRUS (STRAIN HRSP)
620-646
1123-1150
1744-1763
1790-1812
2146-2161
2218-2238

POLYPROTEIN

PPOLR_EPMV
RNA REPLICASE
EGGPLANT MOSAIC VIRUS
808-833

POLYPROTEIN

PPOLR_OYMV
RNA REPLICASE
ONONIS YELLOW MOSAIC VIRUS
707-727
941-962

POLYPROTEIN

PPOLR_TYMV
RNA REPLICASE
TURNIP YELLOW MOSAIC VIRUS
212-233
436-453
1173-1192

POLYPROTEIN

PPOLR_TYMVA
RNA REPLICASE
TURNIP YELLOW MOSAIC VIRUS
212-233
436-453
1173-1192

POLYPROTEIN
(AUSTRALIAN ISOLATE)

PPOLR_TYMVC
RNA REPLICASE
TURNIP YELLOW MOSAIC VIRUS
212-233
436-453
1173-1192

POLYPROTEIN
(ISOLATE TYMC)

PPOLS_EEEV
STRUCTURAL POLYPROTEIN
EASTER EQUINE ENCEPHALITIS
35-50
213-229
491-507

VIRUS

PPOLS_EEEV3
STRUCTURAL POLYPROTEIN
EASTER EQUINE ENCEPHALITIS
35-50
214-230
492-508

VIRUS

PPOLS_EEVV8
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE
32-48
229-245
504-522

ENCEPHALITIS VIRUS

(STRAIN TC-83)

PPOLS_EEVVT
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE
32-48
229-245
504-522

ENCEPHALITIS VIRUS

(STRAIN TRINIDAD DON)

PPOLS_IBVD5
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
900-922

DISEASE VIRUS (STRAIN 52/70)

PPOLS_IBDVA
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
900-922

DISEASE VIRUS (STRAIN AUSTRALIAN 00)

PPOLS_IBDVC
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
900-922

DISEASE VIRUS (STRAIN CU-1)

PPOLS_IBDVP
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
881-903

DISEASE VIRUS (STRAIN PBG-98)

PPOLS_IBDVS
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
900-922

DISEASE VIRUS (STRAIN STC)

PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS
688-708

(STRAIN GULU)

PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
1216-1243

PPOLS_RUBVH
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE
281-302

STRAIN HPV77)

PPOLS_RUBVM
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN M33)
280-301

PPOLS_RUBVR
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE
281-302

STRAIN RA27/3)

PPOLS_RUBVT
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN
281-302
1041-1060

THERIEN)

PPOLS_SFV
STRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
35-59
751-772
780-801

PPOLS_SINDO
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE
33-52

OCKELBO/STRAIN EDSBYN 82-5)

PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAIN
33-52

HRSP AND HRLP)

PPOLS_WEEV
STRUCTURAL POLYPROTEIN
WESTERN EQUINE
36-51
909-933

ENCEPHALITIS VIRUS

PPOL_AVIRE
POL POLYPROTEIN
AVIAN RETICULOENDOTHELIOSIS
283-303

VIRUS

PPOL_BAEVM
POL POLYPROTEIN
BABOON ENDOGENOUS VIRUS
526-544
973-993
999-1019
1070-1091

(STRAIN M7)

PPOL_BIV06
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY
101-119
742-768
868-889

VIRUS (ISOLATE 106)

PPOL_BIV27
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY
101-119
742-768
868-889

VIRUS (ISOLATE 127)

PPOL_BLVAU
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS
487-504

(AUSTRALIAN ISOLATE)

PPOL_BLVJ
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS
487-504

(REVERSE TRANSCRIPTASE)
(JAPANESE ISOLATE BLV-1)

PPOL_CAEVC
POL POLYPROTEIN
CAPRINE ARTHRITIS
393-419
656-671

ENCEPHALITIS VIRUS (STRAIN

CORK)

PPOL_CAMVC
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
184-204
380-407
471-494

(STRAIN CM-1841)

PPOL_CAMVD
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
175-199
375-402
466-489

(STRAIN D/H)

PPOL_CAMVE
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
184-204
380-407
471-494

(STRAIN BBC)

PPOL_CAMVN
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
70-97
185-205
381-408
472-495

(STRAIN NY8153)

PPOL_CAMVS
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
184-204
380-407
471-494

(STRAIN STRASBOURG)

PPOL_CERV
ENZYMATIC POLYPROTEIN
CARNATION ETCHED RING VIRUS
161-186
455-478

PPOL_COYMV
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE
320-343
1286-1311
1606-1622
1641-1665

VIRUS

PPOL_EIAV9
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA
437-456

VIRUS (CLONE 1369)

PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA
437-456

VIRUS (CLONE CL22)

PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA
436-455

VIRUS (ISOLATE WYOMING)

PPOL_FENV1
POL POLYPROTEIN
FELINE ENDOGENOUS VIRUS
383-401
856-876

ECE1

PPOL_FIVPE
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY
407-426
755-775

VIRUS (ISOLATE PETALUMA)

PPOL_FIVSD
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY
407-426
755-775

VIRUS (ISOLATE SAN DIEGO)

PPOL_FIVT2
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY
406-425
665-690
755-775
1041-1060

VIRUS (ISOLATE TM2)

PPOL_FMVD
ENZYMATIC POLYPROTEIN
FIGWORT MOSAIC VIRUS
191-212
464-487

(STRAIN DXS)

PPOL_FOAMV
POL POLYPROTEIN
HUMAN SPUMARETROVIRUS
126-147
768-788

PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
59-80
971-991
1048-1071

PPOL_HTLIA
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
330-346

TYPE I (STRAIN ATK)

PPOL_HTLIC
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
330-346

TYPE I (CARIBBEAN ISOLATE)

PPOL_HTLV2
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
609-627

TYPE II

PPOL_HV1A2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
860-887

VIRUS TYPE 1 (ARV2/SF2

ISOLATE)

PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
635-660
872-899

VIRUS TYPE 1 (BH10

ISOLATE)

PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
872-899

VIRUS TYPE 1 (BH5 ISOLATE)

PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
872-899

VIRUS TYPE 1 (BRU ISOLATE)

PPOL_HV1EL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
622-647
859-886

VIRUS TYPE 1 (ELI ISOLATE)

PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
860-887

VIRUS TYPE 1 (HXB2 ISOLATE)

PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
864-891

VIRUS TYPE 1 (JRCSF ISOLATE)

PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
859-886

VIRUS TYPE 1 (MAL ISOLATE)

PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
863-890

VIRUS TYPE 1 (MN ISOLATE)

PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
623-648
860-887

VIRUS TYPE 1 (NEW YORK-5

ISOLATE)

PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
622-647
859-886

VIRUS TYPE 1 (NDK ISOLATE)

PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
860-887

VIRUS TYPE 1 (OY1 ISOLATE)

PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
635-660
872-899

VIRUS TYPE 1 (PV22 ISOLATE)

PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
859-886

VIRUS TYPE 1 (RF/HAT ISOLATE)

PPOL_HV1U4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
859-886

VIRUS TYPE 1 (STRAIN

UGANDAN/ISO)

PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
622-647
859-886

VIRUS TYPE 1 (Z2/CDC-Z34

ISOLATE)

PPOL_HV1Z6
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
5-32

VIRUS TYPE 1 (ZAIRE 6 ISOLATE)

PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
379-406
907-934

VIRUS TYPE 2 (ISOLATE BEN)

PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
886-913

VIRUS TYPE 2 (ISOLATE CAM2)

PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
397-424
925-952

VIRUS TYPE 2 (ISOLATE D194)

PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
907-934

VIRUS TYPE 2 (ISOLATE D205.7)

PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
359-386
887-914

VIRUS TYPE 2 (ISOLATE GHANA-1)

PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
543-564
771-792
887-914

VIRUS TYPE 2 (ISOLATE NIH-Z)

PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
888-915

VIRUS TYPE 2 (ISOLATE ROD)

PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
359-386
887-907

VIRUS TYPE 2 (ISOLATE SBLISY)

PPOL_IPHA
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL
166-190
198-225
460-477

A-PARTICLE

PPOL_IPMA
PUTATIVE POL POLYPROTEIN
MOUSE INTRACISTERNAL
183-201
209-236
506-523
531-552
769-789

A-PARTICLE

PPOL_IPMAI
PROBABLE
MOUSE INTRACISTERNAL
102-120
128-155
407-423
425-442

POL POLYPROTEIN
A-PARTICLE

PPOL_JSRV
POL POLYPROTEIN
SHEEP PULMONARY
186-213
507-526
660-679

ADENOMATOSIS VIRUS

(JAAGSIEKTE SHEEP RET

PPOL_MCFF3
POL POLYPROTEIN
MINK CELL FOCUS-FORMING
37-53

MURINE LEUKEMIA VIRUS

(ISOLATE C1-

PPOL_MLVAK
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
651-671
728-744

PPOL_MLVAV
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
335-354
978-998
1004-1024
1081-1097

PPOL_MLVCB
POL PROTEIN
CAS-BR-E MURINE LEUKEMIA
64-84
90-110
167-183

VIRUS

PPOL_MLVF5
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA
340-359
983-1003
1009-1029
1086-1102

VIRUS (ISOLATE 57)

PPOL_MLVFF
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA
340-359
983-1003
1009-1029
1086-1102

VIRUS (ISOLATE FB29)

PPOL_MLVFP
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA
340-359
983-1003
1009-1029
1086-1102

VIRUS (ISOLATE PVC-211)

PPOL_MLVMO
POL POLYPROTEIN
MOLONEY MURINE LEUKEMIA
335-354
978-998

VIRUS

PPOL_MLVRD
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA
335-354
978-998
1004-1024
1081-1097

VIRUS

PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA
363-383
389-409
466-482

VIRUS (STRAIN KAPLAN)

PPOL_MMTVB
POL POLYPROTEIN
MOUSE MAMMARY TUMOR
196-219
731-751

VIRUS (STRAIN BR6)

PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER
743-763

VIRUS

PPOL_OMVVS
POL POLYPROTEIN
OVINE LENTIVIRUS
369-395
469-488
632-647
1045-1063

(STRAIN SA-OMVV)

PPOL_RSVP
POL POLYPROTEIN
ROUS SARCOMA VIRUS
719-742

(STRAIN PRAGUE C)

PPOL_RTBV
POLYPROTEIN
RICE TUNGRO BACILLIFORM
891-915
1058-1083

VIRUS (RTBV)

PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM
891-915
1058-1083

VIRUS (ISOLATE PHILIPPINES)

PPOL_SFV1
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
188-204
335-356
845-869
976-996

PPOL_SFV3L
POL POLYPROTEIN
SIMIAN FOAMY VIRUS
186-206
337-358
847-871
978-998

(TYPE 3/STRAIN LK3)

PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
895-915

VIRUS (AGM155 ISOLATE)

PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
711-726
900-920

VIRUS (AGM3 ISOLATE)

PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
899-926

VIRUS (ISOLATE AGM/CLONE

GRI-1)

PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
726-741
915-935

VIRUS (TYO-1 ISOLATE)

PPOL_SIVCZ
POL POLYPROTEIN
CHIMPANZEE
884-911

IMMUNODEFICIENCY VIRUS

PPOL_SIVGB
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
680-695
869-896

VIRUS (ISOLATE GB1)

PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
380-407
908-935

VIRUS (MM142-83 ISOLATE)

PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
380-407
712-737
906-933

VIRUS (K6W ISOLATE)

PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
343-370
871-898

VIRUS (F236/SMH4 ISOLATE)

PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
346-373
874-901

VIRUS (PBJ/BC13 ISOLATE)

PPOL_SMRVH
POL POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS
748-768

PPOL_SMSAV
POL POLYPROTEIN
SIMIAN SARCOMA VIRUS
100-120
177-200

PPOL_SOCMV
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE
131-155

VIRUS

PPOL_SRV1
POL POLYPROTEIN
SIMIAN RETROVIRUS
743-763

PPOL_VILV
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
488-507
651-666
971-991

PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/
488-507
651-666
971-991

CLONE LV1-IKS1)

PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/
488-507
651-666
971-991

CLONE LV1-IKS2)

PPP15_HCMVA
LARGE STRUCTURAL
HUMAN CYTOMEGALOVIRUS
153-171
183-210

PHOSPHOPROTEIN PP150
(STRAIN AD169)

PPP28_HCMVA
28 KD STRUCTURAL
HUMAN CYTOMEGALOVIRUS
116-141

PHOSPHOPROTEIN
(STRAIN AD169)

PPP41_HSV6G
PHOSPHOPROTEIN P41
HERPES SIMPLEX VIRUS
158-175
396-411

(TYPE 6/STRAIN GS)

PPP65_HCMVA
65 KD LOWER MATRIX
HUMAN CYTOMEGALOVIRUS
311-333

PHOSPHOPROTEIN
(STRAIN AD169)

PPP65_HCMVT
64 KD LOWER MATRIX
HUMAN CYTOMEGALOVIRUS
301-323

PHOSPHOPROTEIN
(STRAIN TOWNE)

PPP71_HCMVA
71 KD UPPER MATRIX
HUMAN CYTOMEGALOVIRUS
79-102

PHOSPHOPROTEIN
(STRAIN AD169)

PPR73_MMTVB
PROTEIN PR73
MOUSE MAMMARY TUMOR
40-61

VIRUS (STRAIN BR6)

PPR73_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR
40-61

VIRUS (STRAIN GR)

PPR7L_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR
44-65

VIRUS (STRAIN GR)

PPR7R_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR
40-61

VIRUS (STRAIN GR)

PRASH_MSVHA
TRANSFORMING PROTEINS
HARVEY MURINE SARCOMA
49-73

P21 AND P29
VIRUS

PRASH_RRASV
TRANSFORMING PROTEINS
RASHEED RAT SARCOMA VIRUS
56-80

P21 AND P29

PREEP_CSV
REPEAT ELEMENT PROTEIN
CAMPOLETIS SONORENSIS VIRUS
14-36

PREFR_VACCV
RIFAMPICIN RESISTANCE
VACCINIA VIRUS (STRAIN WR),
274-298
316-335
517-535

PROTEIN
AND (STRAIN COPENHAGEN)

PREFR_VARV
RIFAMPICIN RESISTANCE
VARIOLA VIRUS
274-298
316-335
517-535

PROTEIN

PREV_SIVAG
REV PROTEIN
SIMIAN IMMUNODEFICIENCY
2-17

VIRUS (AGM3 ISOLATE)

PREV_SIVGB
REV PROTEIN
SIMIAN IMMUNODEFICIENCY
45-72

VIRUS (ISOLATE GB1)

PRIR1_ASFM2
RIBONUCLEOSIDE-
AFRICAN SWINE FEVER VIRUS
139-164
189-210
495-510

DIPHOSPHATE REDUCTASE
(ISOLATE MALAWI LIL 20/1)

PRIR1_EBV
RIBONUCLEOTIDE
EPSTEIN-BARR VIRUS
793-812

REDUCTASE
(STRAIN B95-8)

PRIR1_HCMVA
RIBONUCLEOTIDE
HUMAN CYTOMEGALOVIRUS
192-212
669-684

REDUCTASE
(STRAIN AD169)

PRIR1_HSV11
RIBONUCLEOTIDE
HERPES SIMPLEX VIRUS
415-430
587-613

REDUCTASE
(TYPE 1/STRAIN 17)

PRIR1_HSVEB
RIBONUCLEOTIDE
EQUINE HERPESVIRUS TYPE 1
60-85
266-288
668-694

REDUCTASE
(STRAIN AB4P)

PRIR1_HSVSA
RIBONUCLEOTIDE
HERPESVIRUS SAIMIRI
136-151

REDUCTASE
(STRAIN 11)

PRIR1_VACCC
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN
36-51

REDUCTASE
COPENHAGEN)

PRIR1_VACCV
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN WR)
36-51

REDUCTASE

PRIR1_VARV
RIBONUCLEOTIDE
VARIOLA VIRUS
36-51

REDUCTASE

PRIR1_VZVD
RIBONUCLEOTIDE
VARICELLA-ZOSTER VIRUS
34-58
221-247
258-280

REDUCTASE
(STRAIN DUMAS)

PRIR2_EBV
RIBONUCLEOTIDE
EPSTEIN-BARR VIRUS
209-236

REDUCTASE
(STRAIN B95-8)

PRIR2_HSV11
RIBONUCLEOTIDE
HERPES SIMPLEX VIRUS
44-66
275-292

REDUCTASE
(TYPE 1/STRAIN 17)

PRIR2_HSVIK
RIBONUCLEOTIDE
HERPES SIMPLEX VIRUS
43-65
245-261
274-291

REDUCTASE
(TYPE 1/STRAIN KOS)

PRIR2_HSV23
RIBONUCLEOTIDE
HERPES SIMPLEX VIRUS
41-63
272-289

REDUCTASE
(TYPE 2/STRAIN 333)

PRIR2_HSVB3
RIBONUCLEOTIDE
BOVINE HERPESVIRUS TYPE 1
244-266

REDUCTASE
(STRAIN 34)

PRIR2_HSVEB
RIBONUCLEOTIDE
EQUINE HERPESVIRUS TYPE 1
61-88
251-273

REDUCTASE
(STRAIN AB4P)

PRIR2_HSVSA
RIBONUCLEOTIDE
HERPESVIRUS SAIMIRI (STRAIN 11)
212-239

REDUCTASE

PRIR2_SFVKA
RIBONUCLEOTIDE
SHOPE FIBROMA VIRUS
184-206
215-237

REDUCTASE
(STRAIN KASZA)

PRIR2_VACCC
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN
184-206

REDUCTASE
COPENHAGEN)

PRIR2_VACCP
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN L-IVP)
184-206

REDUCTASE

PRIR2_VACCV
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN WR)
184-206

REDUCTASE

PRIR2_VARV
RIBONUCLEOTIDE
VARIOLA VIRUS
184-206
215-237

REDUCTASE

PRIR2_VZVD
RIBONUCLEOTIDE
VARICELLA-ZOSTER VIRUS
237-258

REDUCTASE
(STRAIN DUMAS)

PRMIL_AVEVR
RMIL SER/THR-PROTEIN
AVIAN ROUS-ASSOCIATED VIRUS
380-405

KINASE TRANSFORMING P
TYPE 1

PRP94_VACCV
RNA-POL-ASSOCIATED
VACCINIA VIRUS (STRAIN WR),
173-189
265-290
371-394
561-578

TRANSCRIPTION
AND (STRAIN COPENHAGEN)

SPEC FACT

PRP94_VARV
RNA-POL-ASSOCIATED
VARIOLA VIRUS
173-189
265-290
371-394
561-578

TRANSCRIPTION
AND (STRAIN COPENHAGEN)

SPEC FACT

PRPO1_VACCC
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN
76-96
304-329
848-871
1005-1032

POLYMERASE 147 KD POLYPE
COPENHAGEN)

PRPO1_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR)
76-96
304-329
848-871

POLMERASE 147 KD POLYPE

PRPO1_VARV
DNA-DIRECTED RNA POL 147
VARIOLA VIRUS
76-96
304-329
848-871
1005-1032

KD POLYPE

PRPO2_CAPVK
DNA-DIRECTED RNA
CAPRIPOXVIRUS (STRAIN KS-1)
12-29
477-498

POLYMERASE 132 KD

POLYPE

PRPO2_COWPX
DNA-DIRECTED RNA
COWPOX VIRUS
150-170
258-274
480-505

POLYMERASE 132 KD

POLYPE

PRPO2_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR),
150-170
258-274
480-505

POLYMERASE 132 KD
AND (STRAIN COPENHAGEN)

POLYPE

PRPO2_VARV
DNA-DIRECTED RNA
VARIOLA VIRUS
150-170
258-274
480-505

POLYMERASE 132 KD

POLYPEP

PRPO4_VACCC
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN
33-48

POLYMERASE 35 KD
COPENHAGEN)

POLYPEP

PRPO4_VACCV
DNA-DIRECTED RNA
VACCINAI VIRUS (STRAIN WR)
33-48

POLYMERASE 35 KD

POLYPEP

PRPO4_VARV
DNA-DIRECTED RNA
VARIOLA VIRUS
33-55

POLYMERASE 35 KD

POLYPEP

PRPO6_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR),
38-59

POLYMERASE 19 KD
AND (STRAIN COPENHAGEN)

POLYPEP

PRPO7_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR),
38-59

POLYMERASE 19 KD
AND (STRAIN COPENHAGEN)

POLYPEP

PRPO7_VARV
DNA-DIRECTED RNA
VARIOLA VIRUS
38-59

POLYMERASE 19 KD

POLYPEP

PRPO8_FOWP1
DNA-DIRECTED RNA
FOWLPOX VIRUS (STRAIN FP-1)
57-81

POLYMERASE 18 KD

POLYPEP

PRPOA_LELV
RNA-DIRECTED RNA
LELYSTAD VIRUS
175-197
707-729
1164-1180
1233-1258
1513-1530
1531-1546
1955-1977
2320-2343
2802-2823

POLYMERASE

3133-3156

PRPOL_EAV
RNA-DIRECTED RNA
EQUINE ARTERITIS VIRUS
97-118
602-617
754-774
825-851
2530-2553
3041-3068

POLYMERASE

PRRP1_DHVI1
RNA-DIRECTED RNA
DHORI VIRUS (STRAIN
247-264
275-299
337-359
377-394
569-594

POLYMERASE SUBUNIT P1
INDIAN/1313/61)

PRRP1_IAANN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/ANN ARBOR/6/60)

PRRP1_IABEI
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/BEIJING/11/56)

PRRP1_IADUN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/DUNEDIN/4/73)

PRRP1_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/GULL/MARYLAND/704/77)

PRRP1_IAHLO
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/EQUINE/LONDON/1416/73)

PRRP1_IAHTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/EQUINE/TENNESSEE/5/86)

PRRP1_IAKIE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/KIEV/59/79)

PRRP1_IAKOR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/KOREA/426/68)

PRRP1_IALE1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/LENINGRAD/134/57)

PRRP1_IALE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/LENINGRAD/134/17/57)

PRRP1_IALE3
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/LENINGRAD/134/47/57)

PRRP1_IAMAN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/MALLARD/NEW YORK/6750/78)

PRRP1_IAME8
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/MEMPHIS 8/88)

PRRP1_IANT6
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/NT/60/68)

PRRP1_IAPUE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/PUERTO RICO/8/34)

PRRP1_IASIN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/SINGAPORE/1/57)

PRRP1_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/TURKEY/MINNESOTA/833/80)

PRRP1_IAVI7
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
138-163
244-262

POLYMERASE SUBUNIT P1
A/VICTORIA/3/75)

PRRP1_IAWIL
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/WILSON-SMITH/33)

PRRP1_IAWIS
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/WISCONSIN/3523/88)

PRRP1_IAZH3
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/SWINE/HONG KONG/126/82)

PRRP1_IAZON
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/SWINE/ONTARIO/2/81)

PRRP1_IAZTF
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262

POLYMERASE SUBUNIT P1
A/SWINE/TENNESSEE/26/77)

PRRP1_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
205-222

POLYMERASE SUBUNIT P1
B/ANN ARBOR/1/66

[COLD-ADAPTED])

PRRP1_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
205-222

POLYMERASE SUBUNIT P1
B/ANN ARBOR/1/66 [WILD-TYPE])

PRRP1_INBLE
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
205-222

POLYMERASE SUBUNIT P1
B/LEE/40)

PRRP1_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN
317-341
564-591

POLYMERASE SUBUNIT P1
C/JJ/50)

PRRP2_IAANN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/ANN ARBOR/6/60)

PRRP2_IADH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/DUCK/HOKKAIDO/8/80)

PRRP2_IAFPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/FOWL PLAGUE VIRUS/

ROSTOCK/34)

PRRP2_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/GULL/MARYLAND/704/77)

PRRP2_IAHLO
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/EQUINE/LONDON/1416/73)

PRRP2_IALE1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
(A/LENINGRAD/134/57)

PRRP2_IALE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/LENINGRAD/134/17/57)

PRRP2_IAP10
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/PINTAIL/ALBERTA/119/79)

PRRP2_IAPUE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/PUERTO RICO/8/34)

PRRP2_IARUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/RUDDY TURNSTONE/NEW

JERSEY/47/)

PRRP2_IASIN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/SINGAPORE/1/57)

PRRP2_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/TURKEY/MINNESOTA/833/80)

PRRP2_IAWIL
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
68-86
534-557

POLYMERASE SUBUNIT P2
A/WILSON-SMITH/33)

PRRP2_IAZH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/SWINE/HONG KONG/81/78)

PRRP2_IAZH3
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/SWINE/HONG KONG/126/82)

PRRP2_IAZ11
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557

POLYMERASE SUBUNIT P2
A/SWINE/IOWA/15/30)

PRRP2_IAZTF
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
530-557

POLYMERASE SUBUNIT P2
A/SWINE/TENNESSEE/26/77)

PRRP2_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
32-54

POLYMERASE SUBUNIT P2
(B/ANN ARBOR/1/66

[COLD-ADAPTED])

PRRP2_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
32-54

POLYMERASE SUBUNIT P2
B/ANN ARBOR/1/66 [WILD-TYPE])

PRRP2_INBSI
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
32-54

POLYMERASE SUBUNIT P2
B/SINGAPORE/222/79)

PRRP2_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN
406-425

POLYMERASE SUBUNIT P2
C/JJ/50)

PRRP3_IAANN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/ANN ARBOR/6/60)

PRRP3_IABUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234

POLYMERASE SUBUNIT P3
A/BUDERIGAR/HOKKAIDO/1/77)

PRRP3_IACHI
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/CHILE/1/83)

PRRP3_IAFPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-567

POLYMERASE SUBUNIT P3
A/FOWL PLAGUE VIRUS/

ROSTOCK/34)

PRRP3_IAFPW
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/FOWL PLAGUE VIRUS/

WEYBRIDGE)

PRRP3_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/GULL/MARYLAND/704/77)

PRRP3_IAGUA
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/GULL/ASTRAKHAN/227/84)

PRRP3_IAHK6
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/EQUINE/KENTUCKY/2/86)

PRRP3_IAHLO
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/EQUINE/LONDON/1416/73)

PRRP3_IAHPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/EQUINE/PRAGUE/1/56)

PRRP3_IAKIE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
542-560

POLYMERASE SUBUNIT P3
A/KIEV/59/79)

PRRP3_IAKOR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/KOREA/426/68)

PRRP3_IALE1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/LENINGRAD/134/57)

PRRP3_IALE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/LENINGRAD/134/17/57)

PRRP3_IALE3
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/LENINGRAD/134/47/57)

PRRP3_IAMAN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/MALLARD/NEW YORK/6750/78)

PRRP3_IAME8
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN

219-234
542-560

POLYMERASE SUBUNIT P3

PRRP3_IANT6
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/NT/60/68)

PRRP3_IAPUE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
469-485
542-560

POLYMERASE SUBUNIT P3
A/PUERTO RICO/8/34)

PRRP3_IARUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/RUDDY TURNSTONE/

NEW JERSEY/47/)

PRRP3_IASE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/SEAL/MASSACHUSETTS/133/82)

PRRP3_IASIN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/SINGAPORE/1/57)

PRRP3_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/TURKEY/MINNESOTA/833/80)

PRRP3_IAVI7
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/VICTORIA/3/75)

PRRP3_IAWIL
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/WILSON-SMITH/33)

PRRP3_IAZI1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/SWINE/IOWA/15/30)

PRRP3_IAZTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560

POLYMERASE SUBUNIT P3
A/SWINE/TENNESSEE/24/77)

PRRP3_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
71-86
535-561

POLYMERASE SUBUNIT P3
B/ANN ARBOR/1/66

[COLD-ADAPTED])

PRRP3_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
71-86
535-561

POLYMERASE SUBUNIT P3
B/ANN ARBOR/1/66 [WILD-TYPE])

PRRP3_INCBE
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN
74-96
552-571

POLYMERASE SUBUNIT P3
C/BERLIN/1/85)

PRRP3_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN
74-96
552-571

POLYMERASE SUBUNIT P3
C/JJ/50)

PRRP3_THOGV
RNA-DIRECTED RNA
THOGOTO VIRUS
85-101

POL SUBUNIT P3

PRRPA_CVH22
RNA-DIRECTED RNA
HUMAN CORONA VIRUS
82-104
410-436
858-878
1482-1507
1523-1542
1543-1568
2125-2149
2974-2992
3537-3559

POLYMERASE
(STRAIN 229E)

PRRPA_CVMJD
RNA-DIRECTED RNA
MURINE HEPATITIS VIRUS
440-467

POLYMERASE
(STRAIN DEFECTIVE JHM)

PRRPA_CVMJH
RNA-DIRECTED RNA
MURINE CORONA VIRUS MHV
917-938
1188-1215
1338-1354
1422-1449
1461-1480
1567-1585
1783-1806
2165-2192
2337-2354

POLYMERASE
(STRAIN JHM)

2470-2494
2660-2676
2944-2961
3229-3255
3405-3425
3933-3954

PRRPB_BEV
RNA-DIRECTED RNA
BERNE VIRUS
806-832
1509-1527
1738-1757
2137-2154

POLYMERASE

PRRPB_CVMA5
RNA-DIRECTED RNA
MURINE CORONA VIRUS MHV
385-412
1302-1324
1835-1850
2698-2723

POLYMERASE
(STRAIN A59)

PRRPB_CVMJH
RNA-DIRECTED RNA
MURINE CORONA VIRUS MHV
385-412
746-770
1302-1324
1833-1848
2696-2721

POLYMERASE
(STRAIN JHM)

PRRPB_CVPFS
RNA-DIRECTED RNA
PORCINE TRANSMISSIBLE
173-200
482-508

POLYMERASE
GASTROENTERITIS CORONA-

VIRUS (STRAI)

PRRPB_CVPR8
RNA-DIRECTED RNA
PORCINE RESPIRATORY
80-106

POLYMERASE
CORONAVIRUS (STRAIN

86/137004/BRITISH I)

PRRPB_IBVB
RNA-DIRECTED RNA
AVIAN INFECTIOUS BRONCHITIS
140-164
338-365
887-911
1335-1352
1654-1674

POLYMERASE
VIRUS (STRAIN BEAUDETTE)

PRRPL_BVT10
RNA-DIRECTED RNA
BLUETONGUE VIRUS
21-41
146-161

POLYMERASE
(SEROTYPE 10/ISOLATE USA)

PRRPL_BUNYW
RNA POLYMERASE
BUNYAMWERA VIRUS
78-104
303-324
440-465
1096-1116
1317-1338
1343-1365
1539-1554
1869-1886
2001-2027

PRRPL_EBOV
RNA-DIRECTED RNA
EBOLA VIRUS
16-31

POLYMERASE

PRRPL_HANTV
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118)
151-168
173-194
596-611
1561-1585
2081-2105

PRRPL_HRSV
RNA POLYMERASE BETA
HUMAN RESPIRATORY
3-19

SUBUNIT
SYNCYTIAL VIRUS

PRRPL_HRSVA
RNA POLYMERASE BETA
HUMAN RESPIRATORY
3-19
1181-1206
1425-1447
1633-1653
1929-1948
2018-2037

SUBUNIT
SYNCTIAL VIRUS (STRAIN A2)

PRRPL_MABVM
RNA-DIRECTED RNA
MARBURG VIRUS (STRAIN
15-30
144-169
223-248
317-341
471-492
546-569
931-946
1042-1067
1410-1436

POLYMERASE
MUSOKE)

1711-1731
1990-2017
2071-2094

PRRPL_MABVP
RNA-DIRECTED RNA
MARBURG VIRUS (STRAIN POPP)
15-30
144-169
223-248
471-492
546-569
931-946
1042-1067
1410-1436
1677-1696

POLYMERASE

1715-1731
1805-1832
1990-2017
2071-2094
2223-2246

PRRPL_MEASE
RNA POLYMERASE BETA
MEASLES VIRUS (STRAIN
285-312
617-632
998-1023
1160-1185
1279-1304
1920-1940
2038-2063

SUBUNIT
EDMONSTON)

PRRPL_MUMPM
RNA POLYMERASE BETA
MUMPS VIRUS (STRAIN
43-66
110-135
265-280
962-988
1100-1124
1132-1153
1601-1622
2128-2143

SUBUNIT
(MIYAHARA VACCINE)

PRRPL_NDVB
RNA POLYMERASE BETA
NEWCASTLE DISEASE VIRUS
704-724
1571-1592
1967-1994
2040-2067

SUBUNIT
(STRAIN BEAUDETTE C/45)

PRRPL_PI2HT
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 2 VIRUS
109-124
268-291
308-334
1309-1335
1562-1588
1985-2010
2215-2234

SUBUNIT
(STRAIN TOSHIBA)

PRRPL_PI3H4
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 3 VIRUS
172-193
304-330
844-861
885-900
1848-1868
2068-2084
2111-2134

SUBUNIT
(STRAIN NIH 47885)

PRRPL_PUUMH
RNA-DIRECTED RNA
PUUMALA VIRUS (STRAIN
173-194
596-611
1561-1585
1677-1696
2086-2110

POLYMERASE
HALLNAS B1)

PRRPL_RABVP
RNA POLYMERASE BETA
RABIES VIRUS (STRAIN PV)
266-286
542-563
741-762
1446-1461
1492-1517

SUBUNIT

PRRPL_RABVS
RNA POLYMERASE BETA
RABIES VIRUS (STRAIN SAD B19)
266-286
542-563
741-762
1446-1461
1492-1461
1492-1517
1744-1761

SUBUNIT

PRRPL_RDV
RNA-DIRECTED RNA
RICE DWARF VIRUS
10-27
533-560
680-697
1293-1316

POLYMERASE

PRRPL_RVFVZ
RNA-DIRECTED RNA
RIFT VALLEY FEVER VIRUS
582-609
2009-2035

POLYMERASE
(STRAIN ZH-548 M12)

PRRPL_SEND5
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN Z/
64-83
104-120
194-218
844-861
885-900
1405-1420
1844-1864
2107-2128

SUBUNIT
HOST MUTANTS)

PRRPL_SENDE
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN ENDERS)
14-38
664-681
705-720
1225-1240
1664-1684
1927-1948

SUBUNIT

PRRPL_SENDZ
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN Z)
64-83
104-120
194-218
844-861
885-900
1405-1420
1844-1864
2107-2128

SUBUNIT

PRRPL_SEOU8
RNA-DIRECTED RNA
SEOUL VIRUS (STRAIN 80-39)
151-168
173-194
394-419
596-611
1561-1585
2081-2105

POLYMERASE

PRRPL_SV5WR
RNA POLYMERASE BETA
SIMIAN VIRUS 5 (STRAIN
43-66
108-124
263-289
1094-1118
1125-1147
1558-1580
2117-2137

SUBUNIT
21004-WR)

PRRPL_SYNV
RNA POLYMERASE BETA
SONCHUS YELLOW NET VIRUS
126-146
391-406
605-627
704-731
863-883
886-911
1484-1510
1776-1792

SUBUNIT

PRRPL_TSWVB
RNA-DIRECTED RNA
TOMATO SPOTTED WILT VIRUS
958-974
1385-1410
1778-1800
2609-2627
2678-2702

POLYMERASE
(BRAZILIAN ISOLATE

CPNH1/BR-01)

PRRPL_UUK
RNA POLYMERASE
UUKUNIEMI VIRUS
698-714
923-948
1404-1431
1570-1591
2060-2081

PRRPL_VSVJH
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS
156-183
312-339
903-928
1956-1982
2080-2097

SUBUNIT
(SEROTYPE NEW JERSEY/

STRAIN HA)

PRRPL_VSVJO
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS
156-183
312-339
1956-1982
2080-2101

SUBUNIT
(SEROTYPE NEW JERSEY/

STRAIN OG)

PRRPL_VSVSJ
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS
1956-1982

SUBUNIT
(STRAIN SAN JUAN)

PRRPO_ACLSV
RNA-DIRECTED RNA
APPLE CHLOROTIC LEAF
226-247
1036-1054
1132-1155
1775-1201

POLYMERASE
SPOT VIRUS

PRRPO_BWYVF
PUTATIVE RNA-DIRECTED
BEET WESTERN YELLOWS VIRUS
299-326

RNA POL
(ISOLATE FL-1)

PRRPO_BYDV1
PUTATIVE RNA-DIRECTED
BARLEY YELLOW DWARF VIRUS
359-386
391-416
505-532

RNA POL
(ISOLATE MAV-PS1)

PRRPO_BYDVP
PUTATIVE RNA-DIRECTED
BARLEY YELLOW DWARF VIRUS
359-386
391-416
505-532

RNA POL
(ISOLATE PAV)

PRRPO_BYDVR
PUTATIVE RNA-DIRECTED
BARLEY YELLOW DWARF VIRUS
359-386
391-416
505-532

RNA POL
(ISOLATE P-PAV)

PRRPO_CARMV
PROBABLE RNA-DIRECTED
CARNATION MOTTLE VIRUS
4-30
92-107
327-350
818-833

RNA POL

PRRPO_CGMVS
PUTATIVE RNA-DIRECTED
CUCUMBER GREEN MOTTLE
443-466
574-591
1017-1032
1523-1539

RNA POL
MOSAIC VIRUS (WATERMELON

STRAIN S)

PRRPO_CNV
PROBABLE RNA-DIRECTED
CUCUMBER NECROSIS VIRUS
277-300
345-371
470-494

RNA POL

PRRPO_CRV
PROBABLE RNA-DIRECTED
CYMBIDIUM RINGSPOT VIRUS
96-111
345-371
470-494

RNA POL

PRRPO_IPNVJ
PUTATIVE RNA-DIRECTED
INFECTIOUS PANCREATIC
221-238

RNA POL
NECROSIS VIRUS (SEROTYPE

JASPER)

PRRPO_LYCVA
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGI-
35-52
597-613
659-682
988-1008
1234-1258
1770-1795
2077-2099

TIS VIRUS (STRAIN ARMSTRONG)

PRRPO_LYCVW
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGI-
35-52

TIS VIRUS (STRAIN WE)

PRRPO_MCMV
PROBABLE RNA-DIRECTED
MAIZE CHLOROTIC MOTTLE
16-41
101-127
573-599

RNA POL
VIRUS

PRRPO_PEAMV
RNA-DIRECTED RNA
PEA ENATION MOSAIC VIRUS
144-161
316-336
431-456
558-574

POLYMERASE

PRRPO_PLRV1
PUTATIVE RNA-DIRECTED
POTATO LEAFROLL VIRUS
331-358
576-600

RNA POL
(STRAIN 1)

PRRPO_PLRVW
PUTATIVE RNA-DIRECTED
POTATO LEAFROLL VIRUS
331-358
576-600

RNA POL
(STRAIN WAGENINGEN)

PRRPO_PPMVS
PUTATIVE RNA-DIRECTED
PEPPER MILD MOTTLE VIRUS
375-395
702-726
1069-1096
1491-1507

RNA POL
(STRAIN SPAIN)

PRRPO_RCNMV
PUTATIVE RNA-DIRECTED
RED CLOVER NECROTIC
278-300

RNA POL
MOSAIC VIRUS

PRRPO_REOVJ
RNA-DIRECTED RNA
REOVIRUS (TYPE 2/STRAIN
161-176

POLYMERASE
D5/JONES)

PRRPO_REOVL
RNA-DIRECTED RNA
REOVIRUS (TYPE 1/STRAIN LANG)
161-176

POLYMERASE

PRRPO_ROTBR
RNA-DIRECTED RNA
BOVINE ROTAVIRUS (STRAIN RF)
132-156
247-269
844-861
904-921
942-967
1027-1046

SUBUNIT VP1

PRRPO_ROTBU
RNA-DIRECTED RNA
BOVINE ROTAVIRUS (STRAIN UK)
132-156
247-269
844-861
904-921
942-967
1027-1046

SUBUNIT VP1

PRRPO_ROTPC
RNA-DIRECTED RNA
PORCINE ROTAVIRUS
198-223
254-274
318-337
769-784
856-878
936-952

SUBUNIT VP1
(GROUP C/STRAIN COWDEN)

PRRPO_ROTPG
RNA-DIRECTED RNA
PORCINE ROTAVIRUS
32-53
57-72
132-156
247-269
844-861
904-921
942-967
1027-1046

SUBUNIT VP1
(STRAIN GOTTFRIED)

PRRPO_ROTS1
RNA-DIRECTED RNA
SIMIAN 11 ROTAVIRUS
132-156
247-269
844-861
904-921
942-967
1027-1046

SUBUNIT VP1
(STRAIN SA11)

PRRPO_SBMV
PROBABLE RNA-DIRECTED
SOUTHERN BEAN MOSAIC VIRUS
38-64
122-143
188-206
287-302
444-466
625-643
825-846

RNA POL

PRRPO_TACV
RNA POLYMERASE
TACARIBE VIRUS
88-107
369-389
1281-1301
1676-1692
2019-2046

PRRPO_TBSVC
PUTATIVE RNA-DIRECTED
TOMATO BUSHY STUNT VIRUS
277-300
345-371
470-494

RNA POL
(STRAIN CHERRY)

PRRPO_TCV
PUTATIVE RNA-DIRECTED
TURNIP CRINKLE VIRUS
31-58
241-263

RNA POL

PRRPO_TMGMV
PUTATIVE RNA-DIRECTED
TOBACCO MILD GREEN MOSAIC
209-231
1085-1100

RNA POL
VIRUS (TMV STRAIN U2)

PRRPO_TMV
PUTATIVE RNA-DIRECTED
TOBACCO MOSAIC VIRUS
700-724
1090-1105
1587-1610

RNA POL
(VULGARE)

PRRPO_TMVKR
PUTATIVE RNA-DIRECTED
TOBACCO MOSAIC VIRUS
700-724
1090-1105
1587-1610

RNA POL
(STRAIN KOREAN)

PRRPO_TMVTO
PUTATIVE RNA-DIRECTED
TOBACCO MOSAIC VIRUS
700-724
1090-1105
1151-1170
1587-1610

RNA POL
(STRAIN TOMATO/L)

PRRPO_TNVA
RNA-DIRECTED RNA
TOBACCO NECROSIS VIRUS
113-135

POLYMERASE
(STRAIN A)

PRRPO_TNVD
RNA-DIRECTED RNA
TOBACCO NECROSIS VIRUS
5-26

POLYMERASE
(STRAIN D)

PRRPP_CHAV
RNA POLYMERASE ALPHA
CHANDIPURA VIRUS (STRAIN
124-146

SUBUNIT
1653514)

PRRPP_MUMP1
RNA POLYMERASE ALPHA
MUMPS VIRUS (STRAIN SBL-1)
211-238

SUBUNIT

PRRPP_MUMPE
RNA POLYMERASE ALPHA
MUMPS VIRUS (STRAIN ENDERS)
212-239

SUBUNIT

PRRPP_MUMPM
RNA POLYMERASE ALPHA
MUMPS VIRUS (STRAIN
212-239

SUBUNIT
MIYAHARA VACCINE)

PRRPP_NDVA
RNA POLYMERASE ALPHA
NEWCASTLE DISEASE VIRUS
256-276

SUBUNIT
(STRAIN AUSTRALIA-

VICTORIA/32)

PRRPP_NDVB
RNA POLYMERASE ALPHA
NEWCASTLE DISEASE VIRUS
256-276

SUBUNIT
(STRAIN BEAUDETTE C/45)

PRRPP_PI2H
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2 VIRUS
216-243

SUBUNIT

PRRPP_PI2HT
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2 VIRUS
216-243

SUBUNIT
(STRAIN TOSHIBA)

PRRPP_PI4HA
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 4A
220-247

SUBUNIT
VIRUS (STRAIN TOSHIBA)

PRRPP_PI4HB
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 4B
220-247

SUBUNIT
VIRUS (STRAIN 68-333)

PRRPP_PIRYV
RNA POLYMERASE ALPHA
PIRY VIRUS
134-161

SUBUNIT

PRRPP_RABVA
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN AVO1)
8-32

SUBUNIT

PRRPP_RABVC
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN CVS-11)
8-32

SUBUNIT

PRRPP_RABVE
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN ERA),
8-32
216-237

SUBUNIT
AND (STRAIN PM)

PRRPP_RABVP
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN PV)
8-32
216-237

SUBUNIT

PRRPP_RABV5
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN SAD B19)
8-32
216-237

SUBUNIT

PRRPP_SV5
RNA POLYMERASE ALPHA
SIMINA VIRUS 5 (STRAIN W3)
199-226
282-301

SUBUNIT

PRRPP_VSVJO
RNA POLYMERASE ALPHA
VESICULAR STOMATITIS VIRUS
197-223

SUBUNIT
(SEROTYPE NEW JERSEY/

STRAIN OG)

PS27R_ASFB7
S273R PROTEIN
AFRICAN SWINE FEVER VIRUS
196-218

(STRAIN BA71V)

PSODC_VACCC
SUPEROXIDE DISMUTASE
VACCINIA VIRUS (STRAIN
19-40

LIKE PROTEIN
COPENHAGEN)

PSODC_VACCV
SUPEROXIDE DISMUTASE
VACCINIA VIRUS (STRAIN WR)
19-40

LIKE PROTEIN

PSODC_VARV
SUPEROXIDE DISMUTASE
VARIOLA VIRUS
19-40

LIKE PROTEIN

PSPHR_AMEPV
SHEROIDIN
AMSACTA MOOREI
58-79
627-646

ENTOMOMPOXVIRUS

PSPHR_CBEPV
SHEROIDIN PRECURSOR
CHORISTONEURA BIENNIS
177-201

ENTOMOPOXVIRUS

PSPI1_MYXVL
SERPIN 1
MYXOMA VIRUS (STRAIN
62-80
217-243

LAUSANNE)

PSWFA_SPVKA
SWF8A PROTEIN
SWINEPOX VIRUS (STRAIN
61-83

KASZA)

PTALA_BFDV
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING
354-369

DISEASE VIRUS

PTALA_POVBA
LARGE T ANTIGEN
POLYOMAVIRUS BK (STRAIN AS)
202-224
429-444

PTALA_POVBK
LARGE T ANTIGEN
POLYOMAVIRUS BK
202-224
429-444

PTALA_POVBO
LARGE T ANTIGEN
BOVINE POLYOMAVIRUS
385-400

PTALA_POVHA
LARGE T ANTIGEN
HAMSTER POLYOMAVIRUS
43-69
549-564

PTALA_POVJC
LARGE T ANTIGEN
POLYOMAVIRUS VIRUS JC
201-223
428-443

PTATAL_POVLY
LARGE T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
43-69
516-542

PTALA_POVM3
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS
576-591

(STRAIN 3)

PTALA_POVMA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS
574-589

(STRAIN A2)

PTALA_POVMC
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN
571-586

CRAWFORD SMALL-PLAQUE)

PTALA_POVMK
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS
173-191
278-304
446-472

(STRAIN KILHAM)

PTALA_SV40
LARGE T ANTIGEN
SIMIAN VIRUS 40 (SV40)
200-222
427-442

PTAMI_POVHA
MIDDLE T ANTIGEN
HAMSTER POLYOMAVIRUS
43-69

PTASM_POVHA
SMALL T ANTIGEN
HAMSTER POLYOMAVIRUS
43-69

PTASM_POVLY
SMALL T ANTIGEN
LYMPHOTROPIC POLOMAVIRUS
43-69

PTASM_POVMK
SMALL T ANTIGEN
MOUSE POLYOMAVIRUS
43-69
67-89

(STRAIN KILHAM)

PTATR_NPVAC
TRANS-ACTIVATING TRANS
AUTOGRAPHA CALIFORNICA
406-431

REG PROTEIN
NUCLEAR POLYHEDROSIS VIRUS

PTATR_NPVBM
TRANS-ACTIVATING TRANS
BOMBYX MORI NUCLEAR
411-436

REG PROTEIN
POLYHEDROSIS VIRUS

PTATR_NPVOP
TRANS-ACTIVATING TRANS
ORGYIA PSEUDOTSUGATA
389-414

REG PROTEIN
MULTICAPSID POLYHEDROSIS

VIRUS

PTAT_BIV06
TRANS-ACTIVATING TRANS
BOVINE IMMUNODEFICIENCY
44-59

REG PROTEIN
VIRUS (ISOLATE 106)

PTAT_BIV27
TRANS-ACTIVATING TRANS
BOVINE IMMUNODEFICIENCY
44-59

REG PROTEIN
VIRUS (ISOLATE 127)

PTAT_HTL1A
TRANS-ACTIVATING TRANS
HUMAN T-CELL LEUKEMIA VIRUS
192-210

REG PROTEIN
TYPE 1 (STRAIN ATK)

PTAT_HTL1C
TRANS-ACTIVATING TRANS
HUMAN T-CELL LEUKEMIA VIRUS
192-210

REG PROTEIN
TYPE 1 (CARIBBEAN ISOLATE)

PTAT_HV1U4
TAT PROTEIN
HUMAN IMMUNODEFICIENCY
18-43

VIRUS TYPE 1 (STRAIN

UNANDAN/ISO

PTCB_FLV
T-CELL RECEPTOR BETA
FELINE LEUKEMIA VIRUS
6-22
98-118

CHAIN PRECURSOR

PTEGP_HSVEB
PROBABLE TEGUMENT
EQUINE HERPESVIRUS TYPE 1
101-118

PHOSPHOPROTEIN
(STRAIN AB4P)

PTEGP_HSVEK
TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1
101-118

(STRAIN KENTUCKY A)

PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS
143-166
767-789
814-835
1052-1075
1194-1220
1469-1496
1869-1893
3061-3077
3102-3126

(STRAIN B95-8)

PTEGU_HCMVA
PROBABLE LARGE
HUMAN CYTOMEGALOVIRUS
342-358
644-668
1061-1077
1307-1322
1323-1345
1419-1446
1509-1536
1957-1974
2199-2221

TEGUMENT PROTEIN
(STRAIN AD169)

PTEGU_HSV11
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
12-27
623-646
1732-1759

(TYPE 1/STRAIN 17)

PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
131-152
345-365
615-636
1027-1043
1308-1328
1562-1579

(TYPE 6/STRAIN GS)

PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1
432-456
559-582
1072-1099
1107-1132
1618-1640
1764-1791
2263-2285

(STRAIN AB4P)

PTEGU_HSVSA
PROBABLE LARGE
HERPESVIRUS SAIMIRI
467-491
714-737
989-1008
1121-1137
1155-1174
1177-1193
1503-1525
1607-1622
1898-1915

TEGUMENT PROTEIN
(STRAIN 11)

2421-2349

PTEGU_VZVD
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS
433-456
494-511
711-728
801-823
895-920
1013-1034
1360-1376
1632-1657
1780-1807

(STRAIN DUMAS)

2008-2029
2270-2287
2694-2711

PTERM_ADE02
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 2
63-80
593-616

PTERM_ADE05
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 5
63-80
593-616

PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
63-80
580-603

PTERM_ADE12
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 12
46-63
334-350
546-569

PTOP2_ASFB7
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS
119-146
686-707

(STRAIN BA71V)

PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS
119-146
685-706

(ISOLATE MALAWI LIL 20/1)

PTR14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
139-165

TRL14
(STRAIN AD169)

PTREL_AVIRE
REL TRANSFORMING
AVIAN RETICULOENDOTHELIOSIS
56-74

PROTEIN
VIRUS

PTYSY_VZVD
THYMIDYLATE SYNTHASE
VARICELLA-ZOSTER VIRUS
11-29

(STRAIN DUMAS)

PU15R_HSV6U
POSSIBLE GANCICLOVIR
HERPES SIMPLEX VIRUS
400-415

KINASE
(TYPE 6/STRAIN UGANDA-1102)

PU2L_HSV6U
PROTEIN 2L
HERPES SIMPLEX VIRUS
4-27

(TYPE 6/STRAIN UGANDA-1102)

PUDPE_NPVAC
UDP-GLUCOSYLTRANSFER-
AUTOGRAPHA CALIFORNICA
452-477

ABLE PRECURSOR
NUCLEAR POLYHEDROSIS VIRUS

PUL02_HCMVA
HYPOTHETICAL PROTEIN UL2
HUMAN CYTOMEGALOVIRUS
25-49

(STRAIN AD169)

PUL05_HCMVA
HYPOTHETICAL PROTEIN UL2
HUMAN CYTOMEGALOVIRUS
11-37

(STRAIN AD169)

PUL06_EBV
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS
253-268

(STRAIN B95-8)

PUL06_HCMVA
HYPOTHETICAL PROTEIN UL6
HUMAN CYTOMEGALOVIRUS
191-208

(STRAIN AD169)

PUL06_HSV11
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS
404-429

(TYPE 1/STRAIN 17)

PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1
437-461

(STRAIN AB4P)

PUL06_HSVSA
VIRIION GENE 43 PROTEIN
HERPES VIRUS SAIMIRI
44-60

(STRAIN 11)

PUL07_EBV
BBRF2 PROTEIN
EPSTEIN-BARR VIRUS
127-149

(STRAIN B95-8)

PUL07_HCMVA
HYPOTHETICAL PROTEIN UL7
HUMAN CYTOMEGALOVIRUS
88-108
186-209

(STRAIN AD169)

PUL07_HSV11
PROTEIN UL7
HERPES SIMPLEX VIRUS
177-200

(TYPE 1/STRAIN 17)

PUL07_HSVEB
GENE 55 PROTEIN
EQUINE HERPES VIRUS TYPE 1
11-32

(STRAIN AB4P)

PUL07_HSVSA
GENE 42 PROTEIN
HERPESVIRUS SAIMIRI
44-61

(STRAIN 11)

PUL07_VZVD
GENE 53 PROTEIN
VARICELLA-ZOSTER VIRUS
158-176
202-224

(STRAIN DUMAS)

PUL08_HSV11
PROTEIN UL8
HERPES SIMPLEX VIRUS
514-538
705-726

(TYPE 1/STRAIN 17)

PUL08_VZVD
GENE 52 PROTEIN
VARICELLA-ZOSTER VIRUS
228-255
593-616

(STRAIN DUMAS)

PUL09_HSV11
ORIGIN OF REPLICATION
HERPES SIMPLEX VIRUS
564-584

BINDING PROTEIN
(TYPE 1/STRAIN 17)

PUL09_HSVEB
ORIGIN OF REPLICATION
EQUINE HERPESVIRUS TYPE 1
171-196
612-628

BINDING PROTEIN
(STRAIN AB4P)

PUL09_VZVD
ORIGIN OF REPICATION
VARICELLA-ZOSTER VIRUS
68-92
168-190
484-508

BINDING PROTEIN
(STRAIN DUMAS)

PUL11_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
223-247

UL11
(STRAIN AD169)

PUL13_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
449-467

UL13
(STRAIN AD169)

PUL14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
280-299

UL14
(STRAIN AD169)

PUL14_HSV11
HYPOTHETICAL UL14
HERPES SIMPLEX VIRUS
96-116

PROTEIN
(TYPE 1/STRAIN 17)

PUL14_HSVEB
HYPOTHETICAL GENE 48
EQUINE HERPESVIRUS TYPE 1
100-127

PROTEIN
(STRAIN AB4P)

PUL16_HSV11
PROTEIN UL16
HERPES SIMPLEX VIRUS
22-49

(TYPE 1/STRAIN 17)

PUL16_HSVEB
GENE 46 PROTEIN
EQUINE HERPESVIRUS TYPE 1
26-43
98-119
324-339

(STRAIN AB4P)

PUL16_HSVSA
GENE 33 PROTEIN
HERPESVIRUS SAIMIRI
69-87
278-295

(STRAIN 11)

PUL16_VZVD
GENE 44 PROTEIN
VARICELLA-ZOSTER VIRUS
65-80
317-332

(STRAIN DUMAS)

PUL17_EBV
PROTEIN BGLF1
EPSTEIN-BARR VIRUS
373-393

(STRAIN B95-8)

PUL17_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
60-82

UL17
(STRAIN AD169)

PUL17_HSV11
PROTEIN UL17
HERPES SIMPLEX VIRUS
156-181

(TYPE 1/STRAIN 17)

PUL17_HSVSA
GENE 32 PROTEIN
HERPESVIRUS SAIMIRI
94-118
348-370

(STRAIN 11)

PUL19_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEAGLOVIRUS
61-85

UL19
(STRAIN AD169)

PUL20_PRVN3
UL20 MEMBRANE PROTEIN
PSEUDORABIES VIRUS
54-76

HOMOLOG
(STRAIN NIA-3)

PUL20_VZVD
GENE 39 MEMBRANE
VARICELLA-ZOSTER VIRUS
201-224

PROTEIN
(STRAIN DUMAS)

PUL21_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
91-110

UL21
(STRAIN AD169)

PUL21_HSV11
PROTEIN UL21
HERPES SIMPLEX VIRUS
98-114
130-146

(TYPE 1/STRAIN 17)

PUL21_USV1E
PROTEIN UL21
HERPES SIMPLEX VIRUS
98-114
130-146

(TYPE 1/STRAIN HFEM)

PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1
119-142
294-321
379-403
412-427

(STRAIN AB4P)

PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS
270-293
300-327

(STRAIN DUMAS)

PUL22_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
44-67

UL22
(STRAIN AD169)

PUL24_EBV
PROTEIN BXRF1
EPSTEIN-BARR VIRUS
134-155

(STRAIN B95-8)

PUL24_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
206-222

UL24
(STRAIN AD169)

PUL24_HSV11
PROTEIN UL24
HERPES SIMPLEX VIRUS
147-166

(TYPE 1/STRAIN 17)

PUL24_ILTVT
PROTEIN UL24
INFECTIOUS LARYNGOTRACHEI-
158-179

HOMOLOG
TIS VIRUS (STRAIN THORNE V882)

PUL25_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
484-500

UL25
(STRAIN AD169)

PUL25_HSV11
VIRION PROTEIN UL25
HERPES SIMPLEX VIRUS
86-101

(TYPE 1/STRAIN 17)

PUL25_HSVEB
VIRION PROTEIN UL25
EQUINE HERPESVIRUS TYPE 1
89-104
130-147

(STRAIN AB4P)

PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI
244-265
344-368

(STRAIN 11)

PUL25_ILTVT
64 1 KD VIRION PROTEIN
INFECTIOUS LARYNGOTRACHEI-
270-287
316-336

TIS VIRUS (STRAIN THRONE V882)

PUL27_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
307-324
486-507

UL27
(STRAIN AD169)

PUL29_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
239-266

UL29
(STRAIN AD169)

PUL30_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
9-32

UL30
(STRAIN AD169)

PUL31_EBV
PROTEIN BFLF2
EPSTEIN-BARR VIRUS
273-296

(STRAIN B95-8)

PUL31_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
410-437
582-602

UL31
(STRAIN AD169)

PUL31_HSV11
PROTEIN UL31
HERPES SIMPLEX VIRUS
95-116

(TYPE 1/STRAIN 17)

PUL31_HSVEB
GENE 29 PROTEIN
EQUINE HERPESVIRUS TYPE 1
104-125
288-309

(STRAIN AB4P)

PUL31_HSVSA
GENE 69 PROTEIN
HERPESVIRUS SAIMIRI
145-161
163-190

(STRAIN 11)

PUL31_VZVD
GENE 27 PROTEIN
VARICELLA-ZOSTER VIRUS
117-138
295-316

(STRAIN DUMAS)

PUL32_HSV11
PROBABLE MAJOR ENV
HERPES SIMPLEX VIRUS
127-143
564-585

GLYCOPROTEIN UL32
(TYPE 1/STRAIN 17)

PUL32_HSVEB
MAJOR ENVELOPE
EQUINE HERPESVIRUS TYPE 1
81-108

GLYCOPROTEIN 300
(STRAIN AB4P)

PUL32_VZVD
PROBABLE MAJOR ENV
VARICELLA-ZOSTER VIRUS
553-574

GLYCOPROTEIN 26
(STRAIN DUMAS)

PUL33_HCMVA
G-PROTEIN COUPLED REC
HUMAN CYTOMEGALOVIRUS
76-102

HOMOLOG UL33
(STRAIN AD169)

PUL34_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
214-232
297-321

UL34
(STRAIN AD169)

PUL34_HSV11
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS
251-275

(TYPE 1/STRAIN 17)

PUL34_HSVEB
VIRION GENE 26 PROTEIN
EQUINE HERPESVIRUS TYPE 1
249-264

(STRAIN AB4P)

PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI
207-229

(STRAIN 11)

PUL34_VZVD
VIRION GENE 24 PROTEIN
VARICELLA-ZOSTER VIRUS
244-266

(STRAIN DUMAS)

PUL35_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
229-252
310-329
331-348

UL35
(STRAIN AD169)

PUL36_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
143-168
387-410

UL36
(STRAIN AD169)

PUL37_EBV
PROTEIN BOLF1
EPSTEIN-BARR VIRUS
21-36
135-155
707-730
984-1004

(STRAIN B95-8)

PUL37_HSV11
PROTEIN UL37
HERPES SIMPLEX VIRUS
229-252
262-277
445-467
665-681
758-777
925-947
1009-1028

(TYPE 1/STRAIN 17)

PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1
414-440
491-510
664-690
778-805
901-919

(STRAIN AB4P)

PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SIAMIRI
5-20

(STRAIN 11)

PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS
4-19
104-124
140-165
168-191
196-212
229-244
248-269
670-694
776-803

(STRAIN DUMAS)

904-923

PUL38_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
199-220

UL38
(STRAIN AD169)

PUL40_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
18-35

UL40
(STRAIN AD169)

PUL41_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
15-31
116-134

UL41
(STRAIN AD169)

PUL43_HSV11
MEMBRANE PROTEIN UL43
HERPES SIMPLEX VIRUS
41-63
139-160
343-365
394-421

(TYPE 1/STRAIN 17)

PUL43_HSVEB
GENE 17 MEMBRANE
EQUINE HERPESVIRUS TYPE 1
34-60
86-107

PROTEIN
(STRAIN AB4P)

PUL43_VZVD
GENE 17 MEMBRANE
VARICELLA-ZOSTER VIRUS
88-114
127-146
160-180
277-299
374-400

PROTEIN
(STRAIN DUMAS)

PUL45_HSV11
PROTEIN UL45
HERPES SIMPLEX VIRUS
25-46

(TYPE 1/STRAIN 17)

PUL45_HSV1K
PROTEIN UL45
HERPES SIMPLEX VIRUS
25-46

(TYPE 1/STRAIN KOS)

PUL45_HSV1M
PROTEIN UL45
HERPES SIMPLEX VIRUS
25-46

(TYPE 1/STRAIN MP)

PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS
193-218
438-464
533-556
614-640
741-766

(STRAIN AD169)

PUL47_HSV11
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS
404-425

(TYPE 1/STRAIN 17)

PUL47_HSV1F
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS
404-425

(TYPE 1/STRAIN 17)

PUL47_HSVBP
80 7 KD ALPHA
BOVINE HERPESVIRUS TYPE 1
681-702

TRANS-INDUCING PROTEIN

PUL47_HSVE4
97 KD ALPHA
EQUINE HERPESVIRUS TYPE 4
580-601

TRANS-INDUCING PROTEIN

PUL47_HSVEB
97 KD ALPHA
EQUINE HERPESVIRUS TYPE 1
587-608

TRANS-INDUCING PROTEIN
(STRAIN AB4P)

PUL47_VZVD
ALPHA TRANS-INDUCING
VARICELLA-ZOSTER VIRUS
42-58
608-627

FACTOR 91 8 KD PROTEIN
(STRAIN DUMAS)

PUL49_EBV
HYPOTHETICAL BFRF2
EPSTEIN-BARR VIRUS
336-358

PROTEIN
(STRAIN B95-8)

PUL49_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
248-264
528-543

UL49
(STRAIN AD169)

PUL49_HSV11
TEGUMENT PROTEIN UL49
HERPES SIMPLEX VIRUS
226-252

(TYPE 1/STRAIN 17)

PUL49_HSVSA
HYPOTHETICAL GENE 66
HERPESVIRUS SAIMIRI
232-253

PROTEIN
(STRAIN 11)

PUL50_HCMVA
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS
96-119

(STRAIN AD169)

PUL51_HSV11
PROTEIN UL51
HERPES SIMPLEX VIRUS
49-66

(TYPE 1/STRAIN 17)

PUL51_HSVE4
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 4
169-190

(STRAIN 1942)

PUL51_HSVEB
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 1
166-189

(STRAIN AB4P)

PUL51_VZVD
GENE 7 PROTEIN
VARICELLA-ZOSTER VIRUS
30-49

(STRAIN DUMAS)

PUL52_EBV
PROBABLE DNA
EPSTEIN-BARR VIRUS
44-59

REPLICATION PROTEIN BSLF1
(STRAIN B95-8)

PUL52_HSV11
DNA REPLICATION
HERPES SIMPLEX VIRUS
17-37
65-91

PROTEIN UL52
(TYPE 1/STRAIN 17)

PUL52_HSVE4
DNA REPLICATION
EQUINE HERPESVIRUS TYPE 4
8-27

PROTEIN UL52
(STRAIN 1942)

PUL52_HSVEB
DNA REPLICATION
EQUINE HERPESVIRUS TYPE 1
8-27
135-159
316-337

PROTEIN UL52
(STRAIN AD4P)

PUL52_HSVSA
PROBABLE DNA
HERPESVIRUS SAIMIRI
489-508
586-605

REPLICATION GENE 56
(STRAIN 11)

PROTEIN

PUL52_VZVD
PROBABLE DNA
VARICELLA-ZOSTER VIRUS
446-466
645-670

REPLICATION GENE 6
(STRAIN DUMAS)

PROTEIN

PUL53_HCMVA
PROTEIN UL53
HUMAN CYTOMEGALOVIRUS
173-188

(STRAIN AD169)

PUL53_HSV6U
UL53 PROTEIN HOMOLOG
HERPES SIMPLEX VIRUS
64-80

(TYPE 6/STRAIN UGANDA-1102)

PUL60_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
120-141

UL60
(STRAIN AD169)

PUL62_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
62-84
178-205

UL62
(STRAIN AD169)

PUL68_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
87-107

UL68
(STRAIN AD169)

PUL70_HCMVA
PROBABLE DNA
HUMAN CYTOMEGALOVIRUS
225-252
409-430
499-514
626-645
770-793

REPLICATION PROTEIN UL70
(STRAIN AD169)

PUL71_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
234-250

UL71
(STRAIN AD169)

PUL73_EBV
HYPOTHETICAL BLRF1
EPSTEIN-BARR VIRUS
62-87

PROTEIN
(STRAIN B95-8)

PUL73_HSVSA
HYPOTHETICAL GENE 53
HERPESVIRUS SAIMIRI
51-73

PROTEIN
(STRAIN 11)

PUL74_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
12-32

UL74
(STRAIN AD169)

PUL77_HCMVA
VIRION PROTEIN UL77
HUMAN CYTOMEGALOVIRUS
268-291
607-628

(STRAIN AD169)

PUL78_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
71-90
190-205

UL78
(STRAIN AD169)

PUL79_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
40-58

UL79
(STRAIN AD169)

PUL84_HCMVA
65 KD EARLY
HUMAN CYTOMEGALOVIRUS
100-116

NONSTRUCTURAL PROTEIN
(STRAIN AD169)

PUL84_HCMVT
65 KD EARLY
HUMAN CYTOMEGALOVIRUS
100-116

NONSTRUCTURAL PROTEIN
(STRAIN TOWNE)

PUL87_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS
406-422
530-557

B(C)RF1
(STRAIN B95-8)

PUL87_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
205-231
309-335
606-628
633-653
757-781

UL87
(STRAIN AD169)

PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS
301-322
507-529

(TYPE 6/STRAIN UGANDA-1102)

PUL87_HSVSA
HYPOTHETICAL GENE 24
HERPESVIRUS SAIMIRI
365-387
402-422
579-595

PROTEIN
(STRAIN 11)

PUL88_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
173-191
252-279

UL88
(STRAIN AD169)

PUL88_HSV6U
HYPOTHETICAL PROTEIN 6R
HERPES SIMPLEX VIRUS
150-173

(TYPE 6/STRAIN UGANDA-1102)

PUL90_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
35-50

UL90
(STRAIN AD169)

PUL91_HSV6U
HYPOTHETICAL PROTEIN 8R
HERPES SIMPLEX VIRUS
43-65

(TYPE 6/STRAIN UGANDA-1102)

PUL92_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
76-99

UL92
(STRAIN AD169)

PUL92_HSV6U
HYPOTHETICAL PROTEIN 9R
HERPES SIMPLEX VIRUS
36-55
100-119

(TYPE 6/STRAIN UGANDA-1102)

PUL94_HCMVA
PROTEIN UL94
HUMAN CYTOMEGALOVIRUS
49-70

PUL95_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS
201-223

BGLF3
(STRAIN B95-8)

PUL95_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
508-526

UL95
(STRAIN AD169)

PUL95_HSV6U
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS
9-30
328-346

(TYPE 6/STRAIN UGANDA-1102)

PUL95_HSVSA
HYPOTHETICAL GENE 34
HERPESVIRUS SAIMIRI
187-209

PROTEIN
(STRAIN 11)

PUL97_HCMVA
GANCICLOVIR KINASE
HUMAN CYTOMEGALOVIRUS
208-228
541-567

(STRAIN AD169)

PULA2_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
168-185

UL102
(STRAIN AD169)

PULA3_HCMVA
PROTEIN UL103
HUMAN CYTOMEGALOVIRUS
26-47

(STRAIN AD169)

PULA4_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS
215-235
423-450

(STRAIN AD169)

PULA8_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
93-118

UL108
(STRAIN AD169)

PULB1_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
60-81

UL111
(STRAIN AD169)

PULB3_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
298-319

UL113
(STRAIN AD169)

PULB7_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
178-195

UL117
(STRAIN AD169)

PULB8_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
103-130

UL118
(STRAIN AD169)

PULC1_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
129-153

UL121
(STRAIN AD169)

PULD2_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
4-22

UL132
(STRAIN AD169)

PUNG_FOWP1
URACIL-DNA GLUCOSYLASE
FOWLPOX VIRUS (STRAIN FP-1)
12-37

PUNG_HSVEB
URACIL-DNA GLUCOSYLASE
EQUINE HERPESVIRUS TYPE 1
224-250

(STRAIN AB4P)

PUNG_VACCC
URACIL-DNA GLUCOSYLASE
VACCINIA VIRUS (STRAIN
82-103

COPENHAGEN)

PUNG_VACCV
URACIL-DNA GLUCOSYLASE
VACCINIA VIRUS (STRAIN WR)
82-103

PUNG_VARV
URACIL-DNA GLUCOSYLASE
VARIOLA VIRUS
82-103

PUNG_VZVD
URACIL-DNA GLUCOSYLASE
VARICELLA-ZOSTER VIRUS
217-243

(STRAIN DUMAS)

PUS02_HSVEB
GENE 68 PROTEIN
EQUINE HERPESVIRUS TYPE 1
48-63

(STRAIN AB4P)

PUS02_HSVEK
US1 PROTEIN
EQUINE HERPESVIRUS TYPE 1
48-63

(STRAIN KENTUCKY A)

PUS02_PRVN3
PROTEIN US2 HOMOLOG
PSEUDORABIES VIRUS
120-136

(STRAIN NIA-3)

PUS03_HCMVA
HQLF1 PROTEIN
HUMAN CYTOMEGALOVIRUS
24-39

(STRAIN AD169)

PUS05_HSV11
PUTATIVE GLYCOPROTEIN
HERPES SIMPLEX VIRUS
53-70

US5
(TYPE 1/STRAIN 17)

PUS05_HSV2
PUTATIVE GLYCOPROTEIN
HERPES SIMPLEX VIRUS
53-70

US5
(TYPE 2)

PUS09_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
179-206

HXLF3
(STRAIN AD169)

PUS11_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
98-113

HXLF1
(STRAIN AD169)

PUS12_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
29-50
113-135
195-222

HVLF6
(STRAIN AD169)

PUS13_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
11-33
208-231

HVLF5
(STRAIN AD169)

PUS14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
236-260

HVLF4
(STRAIN AD169)

PUS15_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
378-402
443-466

HVLF3
(STRAIN AD169)

PUS16_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
151-174
243-267

HVLF2
(STRAIN AD169)

PUS17_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
110-126

HVLF1
(STRAIN AD169)

PUS19_HCMVA
MEMBRANE PROTEIN
HUMAN CYTOMEGALOVIRUS
120-142
178-202
214-232

HWLF4
(STRAIN AD169)

PUS21_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
41-67
155-182

HWLF2
(STRAIN AD169)

PUS22_HCMVA
EARLY NUCLEAR PROTEIN
HUMAN CYTOMEGALOVIRUS
270-292

HWLF1
(STRAIN AD169)

PUS23_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
292-310

HHLF7
(STRAIN AD169)

PUS24_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
352-373

HHLF6
(STRAIN AD169)

PUS28_HCMVA
G-PROTEIN COUPLED REC
HUMAN CYTOMEGALOVIRUS
34-49
140-160

HOMOLOG US28
(STRAIN AD169)

PUS28_HCMVT
G-PROTEIN COUPLED REC
HUMAN CYTOMEGALOVIRUS
34-49
140-160

HOMOLOG US28
(STRAIN TOWNE)

PUS29_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
246-269

HHRF4
(STRAIN AD169)

PUS30_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
102-128
208-233

HHRF5
(STRAIN AD169)

PUS33_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
41-59

HHLF3
(STRAIN AD169)

PV07K_LSV
7 KD PROTEIN
LILY SYMPTOMLESS VIRUS
27-46

PV07K_NMV
7 KD PROTEIN
POTATO VIRUS S (STRAIN
28-49

PERUVIAN)

PV07K_PVSP
7 KD PROTEIN
POTATO VIRUS X (PVX)
31-48

PV07K_PVX
7 KD PROTEIN
POTATO VIRUS X (STRAIN X3)
31-48

PV07K_PVXX3
7 KD PROTEIN
POTATO VIRUS X (STRAIN XC)
31-48

(STRAIN CP)

PV117_ASFL5
LIS 121-1 PROTEIN
AFRICAN SWINE FEVER VIRUS
73-94

(STRAIN LIS57)

PV121_ASFL5
125 KD PROTEIN
ALFALFA MOSAIC VIRUS
59-79

(STRAIN 425/ISOLATE LEIDEN)

PV12K_PVMR
12 KD PROTEIN
POTATO VIRUS M (STRAIN
79-96

RUSSIAN)

PV13K_TRVPL
16 KD PROTEIN
TOBACCO RATTLE VIRUS
24-51

(STRAIN PLB)

PV143_NPVAC
HELICASE
AUTOGRAPHA CALIFORNICA
79-102
846-863
1013-1037

NUCLEAR POLYHEDROSIS VIRUS

PV14K_BSVM
14 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
14-29
80-99

(BSMV)

PV18K_MLVAB
18 KD PROTEIN
ABELSON MURINE LEUKEMIA
29-44
128-154

VIRUS

PV19R_VACCV
PROTEIN B19
VACCINIA VIRUS (STRAIN WR)
114-132
152-172

PV1A_BBMV
1A PROTEIN
BROAD BEAN MOTTLE VIRUS
196-220
752-771

PV1A_BMV
1A PROTEIN
BROME MOSAIC VIRUS
747-767

PV1A_CCMV
1A PROTEIN
COWPEA CHLOROTIC MOTTLE
744-763

VIRUS

PV1A_CMVFN
1A PROTEIN
CUCUMBER MOSAIC VIRUS
775-800

(STRAIN FNY)

PV1A_CMVO
1A PROTEIN
CUCUMBER MOSAIC VIRUS
775-800

(STRAIN O)

PV1A_CMVQ
1A PROTEIN
CUCUMBER MOSAIC VIRUS
774-799

(STRAIN Q)

PV1A_PSVJ
1A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
472-493
783-808

PV23K_HSVTH
23 5 KD PROTEIN
TURKEY HERPESVIRUS
176-191

(STRAIN H2)

PV28K_PLRV1
28 KD PROTEIN
POTATO LEAFROLL VIRUS
60-76
192-207

(STRAIN 1) (

PV28K_PLRVW
28 KD PROTEIN
POTATO LEAFROLL VIRUS
60-76
192-207

(STRAIN WAGENINGEN)

PV29K_BWYVF
29 KD PROTEIN
BEET WESTERN YELLOWS VIRUS
22-43
136-157

(ISOLATE FL-1)

PV29K_PEBV
29 6 KD PROTEIN
PEA EARLY BROWNING VIRUS
114-132

PV2A_BMV
2A PROTEIN
BROME MOSAIC VIRUS
285-303
759-777

PV2A_CCMV
2A PROTEIN
COWPEA CHLOROTIC MOTTLE
296-314

VIRUS

PV2A_TAV
2A PROTEIN
TOMATO ASPERMY VIRUS
234-255

PV30K_TRVTC
29 1 KD PROTEIN
TOBACCO RATTLE VIRUS
62-82

(STRAIN TCM)

PV31K_TOBSV
31 7 KD PROTEIN
TOBACCO STREAK VIRUS
226-250

(STRAIN WC)

PV362_ASFB7
K 362 PROTEIN
AFRICAN SWINE FEVER VIRUS
145-164

(STRAIN BA71V)

PV375_ASFL5
LIS 375 PROTEIN
AFRICAN SWINE FEVER VIRUS
114-135

(STRAIN LIS57)

PV382_ASFL5
LIS 382 PROTEIN
AFRICAN SWINE FEVER VIRUS
114-135

(STRAIN LIS57)

PV3A_CCMV
COWPEA CHLOROTIC

160-187

MOTTLE VIRUS

PV3A_CMVFN
3A PROTEIN
CUCUMBER MOSAIC VIRUS
214-235

(STRAIN FNY)

PV3A_CMVM
3A PROTEIN
CUCUMBER MOSAIC VIRUS
214-235

(STRAIN M)

PV3A_CMVO
3A PROTEIN
CUCUMBER MOSAIC VIRUS
214-235

(STRAIN O)

PV3A_CMVQ
3A PROTEIN
CUCUMBER MOSAIC VIRUS
214-235

(STRAIN Q)

PV3A_CMVY
CUCUMBER MOSAIC VIRUS

214-235

(STRAIN Y)

PV3A_IBVB
3A PROTEIN
AVAIN INFECTIOUS BRONCHITIS
5-28

VIRUS (STRAIN BEAUDETTE)

PV3A_IBVM
3A PROTEIN
AVAIN INFECTIOUS BRONCHITIS
5-28

VIRUS (STRAIN M41)

PV3A_IBVP3
3A PROTEIN
AVAIN INFECTIOUS BRONCHITIS
5-28

VIRUS (STRAIN PORTUGAL/322/82)

PV3A_IBVU5
3A PROTEIN
AVAIN INFECTIOUS BRONCHITIS
5-28

VIRUS (STRAIN UK/183/66)

PV3A_TAV
3A PROTEIN
TOMATO ASPERMY VIRUS
147-168

PV58K_BSMV
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
320-340

PV66K_BWYVF
PROTEIN 6B
CANINE ENTERIC CORONA VIRUS
97-116

(STRAIN K378)

PV70K_TYMVA
69 KD PROTEIN
TURNIP YELLOW MOSAIC VIRUS
12-35

(AUSTRALIAN ISOLATE)

PV90K_AMVLE
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN
44-59

425/ISOLATE LEIDEN)

PVA04_VACCC
PROTEIN A4
VACCINIA VIRUS (STRAIN
217-244

COPENHAGEN)

PVA04_VACCV
PROTEIN A4
VACCINIA VIRUS (STRAIN WR)
217-244

PVA04_VARV
PROTEIN A4
VARIOLA VIRUS
207-234

PVA09_VACCC
PROTEIN A9
VACCINIA VIRUS (STRAIN
41-66

COPENHAGEN)

PVA09_VARV
PROTEIN A9
VARIOLA VIRUS
41-66

PVA11_VACCC
PROTEIN A11
VACCINIA VIRUS (STRAIN
23-44
140-159
299-317

COPENHAGEN)

PVA11_VARV
PROTEIN A11
VARIOLA VIRUS
23-44
141-160
300-318

PVA14_VACCC
PROTEIN A14
VACCINIA VIRUS (STRAIN
39-62

COPENHAGEN)

PVA14_VARV
PROTEIN A14
VARIOLA VIRUS
39-62

PVA16_VACCC
PROTEIN A16
VACCINIA VIRUS (STRAIN
341-362

COPENHAGEN)

PVA16_VARV
PROTEIN A16
VARIOLA VIRUS
340-361

PVA18_VACCC
56 KD ABORTIVE LATE
VACCINIA VIRUS (STRAIN
429-447

PROTEIN
COPENHAGEN)

PVA18_VACCV
56 KD ABORTIVE LATE
VACCINIA VIRUS (STRAIN WR)
429-447

PROTEIN

PVA18_VARV
56 KD ABORTIVE LATE
VARIOLA VIRUS
429-447

PROTEIN

PVA20_VACCC
PROTEIN A20
VACCINIA VIRUS (STRAIN
107-131
193-209

COPENHAGEN)

PVA20_VARV
PROTEIN A20
VARIOLA VIRUS
107-131
193-209

PVA23_VARV
PROTEIN A23
VARIOLA VIRUS
58-82

PVA28_VACCV
PROTEIN A28
VACCINIA VIRUS (STRAIN WR),
53-76

AND (STRAIN COPENHAGEN)

PVA28_VARV
PROTEIN A28
VARIOLA VIRUS
53-76

PVA32_VACCV
PROTEIN A32
VACCINIA VIRUS (STRAIN WR),
205-220

AND (STRAIN COPENHAGEN)

PVA32_VARV
PROTEIN A32
VARIOLA VIRUS
175-190

PVA35_VACCC
PROTEIN A35 PRECURSOR
VACCINIA VIRUS (STRAIN
33-49

COPENHAGEN)

PVA35_VACCV
PROTEIN A35 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
33-49
141-164

PVA37_VACCC
PROTEIN A37
VACCINIA VIRUS (STRAIN
66-90

COPENHAGEN)

PVA37_VACCV
PROTEIN A37
VACCINIA VIRUS (STRAIN WR)
66-90

PVA40_VACCC
PROTEIN A40
VACCINIA VIRUS (STRAIN
4-30

COPENHAGEN)

PVA41_VACCC
PROTEIN A41 PRECURSOR
VACCINIA VIRUS (STRAIN
47-71

COPENHAGEN)

PVA41_VACCV
PROTEIN A41 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
47-71

PVA41_VARV
PROTEIN A41 PRECURSOR
VARIOLA VIRUS
47-71

PVA47_VACCC
PROTEIN A47
VACCINIA VIRUS (STRAIN
59-79
201-226

COPENHAGEN)

PVA47_VACCV
PROTEIN A47
VACCINIA VIRUS (STRAIN WR)
59-79
201-226

PVA47_VARV
PROTEIN A47
VARIOLA VIRUS
59-79
201-226

PVA55-VACCC
PROTEIN A55
VACCINIA VIRUS (STRAIN
247-266
384-404

COPENHAGEN)

PVA55_VACCV
PROTEIN A55
VACCINIA VIRUS (STRAIN WR)
247-266
384-404

PVAL1_BCTV
AL1 PROTEIN
BEET CURLY TOP VIRUS
56-75

VAL1_CLVK
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
55-74

WEST KENYAN 844)

PVAL1_CLVN
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
55-74

NIGERIAN)

PVAL3_BCTV
AL3 PROTEIN
BEET CURLY TOP VIRUS
82-108

PVAL3_CLVK
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
77-97

WEST KENYAN 844)

PVAL3_CLVN
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
77-97

NIGERIAN)

PVAL3_TYLCM
AL3 PROTEIN
TOMATO YELLOW LEAF CURL
78-97

VIRUS (STRAIN MARMANDE)

PVAL3_TYLCV
AL3 PROTEIN
TOMATO YELLOW LEAF CURL
77-97

VIRUS

PVAT_CAMVC
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157

PROTEIN
(STRAIN CM-1841)

PVAT_CAMVD
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157

PROTEIN
(STRAIN D/H)

PVAT_CAMVE
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157

PROTEIN
(STRAIN BBC)

PVAT_CAMVN
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157

PROTEIN
(STRAIN NY8153)

PVAT_CAMVP
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157

PROTEIN
(STRAIN PV147)

PVAT_CAMVS
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157

PROTEIN
(STRAIN STRASBOURG)

PVAT_CAMVW
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
34-60

PROTEIN
(STRAIN W260)

PVAT_CERV
APHID TRANSMISSION
CARNATION ETCHED RING VIRUS
141-161

PROTEIN

PVAT_FMVD
APHID TRANSMISSION
FIGWORT MOSAIC VIRUS
132-159

PROTEIN
(STRAIN DXS)

PVB02_VACCC
PROTEIN B2
VACCINIA VIRUS (STRAIN
155-170

COPENHAGEN)

PVB02_VACCV
PROTEIN B2
VACCINIA VIRUS (STRAIN WR)
155-170

PVB04_VACCC
PROTEIN B4
VACCINIA VIRUS (STRAIN
155-170

COPENHAGEN)

PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
489-511

PVB04_VARV
PROTEIN B4
VARIOLA VIRUS
489-511

PVB05_VACC0
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN
251-271

PROTEIN PRECURSOR
LC16MO)

PVB05_VACCC
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN
251-271

PROTEIN PRECUROSR
COPENHAGEN)

PVB05_VACCL
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN LISTER)
251-271

PROTEIN PRECURSOR

PVB05_VACCV
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN WR)
251-271

PROTEIN PRECURSOR

PVB06_VACCV
PROTEIN B6
VACCINIA VIRUS (STRAIN WR)
59-82

AND (STRAIN COPENHAGEN)

PVB15_VACCC
PROTEIN B15
VACCINIA VIRUS (STRAIN
121-143

COPENHAGEN)

PVB15_VACCV
PROTEIN B15
VACCINIA VIRUS (STRAIN WR)
121-143

PVB15_VARV
PROTEIN B15
VARIOLA VIRUS
121-143

PVB17_VACCC
PROTEIN B17
VACCINIA VIRUS (STRAIN
157-179

COPENHAGEN)

PVB17_VACCV
PROTEIN B17
VACCINIA VIRUS (STRAIN WR)

PVBL1_CLVK
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
34-51

WEST KENYAN 844)

PVBL1_CLVN
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
34-51

NIGERIAN)

PVBL1_SLCV
BL1 PROTEIN
SQUASH LEAF CURL VIRUS
245-268

PVBRL1_ABMVW
BR1 PROTEIN
ABUTILON MOSAIC VIRUS
166-191

(ISOLATE WEST INDIA)

PVBR1_BGMV
BR1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
166-191

PVBR1_PYMVV
BR1 PROTEIN
POTATO YELLOW MOSAIC VIRUS
166-191

(ISOLATE VENEZUELA)

PVBR1_SLCV
BR1 PROTEIN
SQUASH LEAF CURL VIRUS

PVC01_VACCC
PROTEIN C1
VACCINIA VIRUS (STRAIN
70-90

COPENHAGEN)

PVC01_VACCV
PROTEIN C1
VACCINIA VIRUS (STRAIN WR)
75-95

PVC01_VARV
PROTEIN C1
VARIOLA VIRUS
58-78

PVC02_SFVKA
HYPOTHETICAL PROTEIN C2
SHOPE FIBROMA VIRUS
8-31

(STRAIN KASZA)

PVC03_SFVKA
G-PROTEIN COUPLED
SHOPE FIBROMA VIRUS
98-123
179-197

RECEPTOR HOMOLOG C3
(STRAIN KASZA)

PVC04_VACCC
PROTEIN C4
VACCINIA VIRUS (STRAIN
182-209

COPENHAGEN)

PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
183-208

PVC05_SFVKA
HYPOTHETICAL PROTEIN C6
SHOPE FIBROMA VIRUS
20-47

(STRAIN KASZA)

PVC08_SFVKA
HYPOTHETICAL PROTEIN C8
SHOPE FIBROMA VIRUS
14-30

(STRAIN KASZA)

PVC09_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN
40-59

COPENHAGEN)

PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
40-59

PVC10_SFVKA
HYPOTHETICAL PROTEIN C10
SHOPE FIBROMA VIRUS
85-109

(STRAIN KASZA)

PVC10_VACCC
PROTEIN C10
VACCINIA VIRUS (STRAIN
42-64

COPENHAGEN)

PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
42-64

PVC10_VARV
PROTEIN C10
VARIOLA VIRUS
42-64

PVC16_VACCC
PROTEIN C16/B22
VACCINIA VIRUS (STRAIN
41-68

COPENHAGEN)

PVC17_VACCC
PROTEIN C17/B23
VACCINIA VIRUS (STRAIN
301-326

COPENHAGEN)

PVC21_VACCC
PROTEIN C21/B27
VACCINIA VIRUS (STRAIN
3-28

COPENHAGEN)

PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS
148-172
366-381
1072-1095

(STRAIN B95-8)

PVCAP_HCMVA
MAJOR CAPSID PROTEIN
HUMAN CYTOMEGALOVIRUS
668-684
842-860
871-893

(STRAIN AD169)

PVCAP_HSV11
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS
283-302
358-384
1137-1152

(TYPE 1/STRAIN 17)

PVCAP_HSVEB
MAJOR CAPSID PROTEIN
EQUINE HERPESVIRUS TYPE 1
357-383
872-898

(STRAIN AB4P)

PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI
144-168
269-287
357-372
1062-1089

(STRAIN 11)

PVCAP_PRVIS
MAJOR CAPSID PROTEIN
PSEUDORABIES VIRUS
335-362

(STRAIN INDIANA S)

PVCAP_VZVD
MAJOR CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS
381-401
891-910
1156-1176

(STRAIN DUMAS)

PVCG3_NPVAC
DNA-BINDING PROTEIN
AUTOGRAPHA CALIFORNICA
60-81

NUCLEAR POLYHEDROSIS VIRUS

PVD03_VACCC
PROTEIN D3
VACCINIA VIRUS (STRAIN
12-39

COPENHAGEN)

PVD03_VACCV
PROTEIN D3
VACCINIA VIRUS (STRAIN WR)
12-39

PVD03_VARV
PROTEIN D3
VARIOLA VIRUS
12-39

PVD05_FOWP1
92 6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
246-265
315-337

PVD05_SFVKA
PROTEIN D5
SHOPE FIBROMA VIRUS
54-78
171-198

(STRAIN KASZA)

PVD05_VACCC
PROTEIN D5
VACCINIA VIRUS (STRAIN
320-340
694-714
715-734

COPENHAGEN)

PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
320-340
694-714
715-734

PVD05_VARV
PROTEIN D5
VARIOLA VIRUS
320-340
694-714
715-734

PVDBP_CAMVC
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56

(STRAIN CM-1841)

PVDBP_CAMVD
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56

(STRAIN D/H)

PVDBP_CAMVE
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56

(STRAIN BBC)

PVDBP_CAMVN
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56

(STRAIN NY8153)

PVDBP_CAMVS
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56

(STRAIN STRASBOURG)

PVE02_VACCC
PROTEIN E2
VACCINIA VIRUS (STRAIN
70-97
355-380
540-558

COPENHAGEN)

PVE02_VACCV
PROTEIN E2
VACCINIA VIRUS (STRAIN WR)
70-97
355-380
540-558

PVE02_VARV
PROTEIN E2
VARIOLA VIRUS
70-97
355-380
540-558

PVE05_VACCC
PROTEIN E5
VACCINIA VIRUS (STRAIN
314-329

COPENHAGEN)

PVE05_VACCD
PROTEIN E5
VACCINIA VIRUS (STRAIN
324-339

DAIREN I)

PVE05_VACCV
PROTEIN E5
VACCINIA VIRUS (STRAIN WR)
324-339

PVE05_VARV
PROTEIN E5
VARIOLA VIRUS
324-339

PVE06_VACCC
PROTEIN E6
VACCINIA VIRUS (STRAIN
430-451

COPENHAGEN)

PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
430-451

PVE06_VARV
PROTEIN E6
VARIOLA VIRUS
251-267
430-451

PVE08_VACCC
PROTEIN E8
VACCINIA VIRUS (STRAIN
254-270

COPENHAGEN)

PVEO8_VACCV
PROTEIN E8
VACCINIA VIRUS (STRAIN WR)
254-270

PVE08_VARV
PROTEIN E8
VARIOLA VIRUS
254-270

PVE12_HPV16
PROBABLE E1 PROTEIN 2
HUMAN PAPILLOMAVIRUS
167-183

TYPE 16

PVE18_NPVAC
EARLY 18 5 KD PROTEIN
AUTOGRAPHA CALIFORNICA
106-113

NUCLEAR POLYHEDROSIS VIRUS

PVE1_BPV1
E1 PROTEIN
BOVINE PAPILLOMAVIRUS
265-282
517-533

TYPE 1

PVE1_BPV2
E1 PROTEIN
BOVINE PAPILLOMAVIRUS
265-281
516-532

TYPE 2

PVE1_CRPVK
E1 PROTEIN
COTTONTAIL RABBIT (SHOPE)
7-22

PAPILLOMAVIRUS (STRAIN

KANSAS)

PVE1_HPV11
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
258-275
311-334

TYPE 11

PVE1_HPV13
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
308-324

TYPE 13

PVE1_HPV18
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
264-281
317-333
344-364

TYPE 18

PVE1_HPV31
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
237-254

TYPE 31

PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
238-260

TYPE 33

PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
334-354

TYPE 39

PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
363-380

TYPE 41

PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
304-320

TYPE 42

PVE1_HPV58
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
238-260

TYPE 58

PVE1_HPV6B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
258-275
311-334

TYPE 6B

PVE1_PCPV1
E1 PROTEIN
PYGMY CHIMPANZEE
257-274
310-326

PAPILLOMAVIRUS TYPE 1

PVE1_RHPV1
E1 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
286-309

PVE2_CRPVK
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE)
308-333

PAPILLOMAVIRUS (STRAIN

KANSAS)

PVE2_HPV11
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
285-310

TYPE 11

PVE2_HPV13
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
295-320

TYPE 13

PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
288-306

TYPE 18

PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
284-300

TYPE 1A

PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
311-336

TYPE 2A

PVE2_HPV31
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
294-312

TYPE 31

PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
275-293

TYPE 33

PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
289-307

TYPE 35

PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
292-310

TYPE 39

PVE2_HPV42
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
321-338

TYPE 42

PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
303-328

TYPE 57

PVE2_HPV6B
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
286-311

TYPE 6B

PVE2_PAPVD
PROBABLE E2 PROTEIN
DEER PAPIOLMAVIRUS
333-351

PVE2_PCPV1
E2 PROTEIN
PYGMY CHIMPANZEE
295-320

PAPILLOMAVIRUS TYPE 1

PVE2_RHPV1
E2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
290-308

PVE4_HPV18
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
39-59

TYPE 18

PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
56-76

TYPE 41

PVE4_HPV51
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
59-83

TYPE 51

PVE4_RHPV1
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
63-87

TYPE 1

PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
19-42

TYPE 11

PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
19-42

TYPE 6C

PVE5_BPV1
E5 PROTEIN
BOVINE PAPILLOMAVIRUS
2-26

TYPE 1 AND TYPE 2

PVE5_HPV13
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
19-42

TYPE 13

PVE5_HPV31
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
31-52

TYPE 31

PVE5_HPV42
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
45-65

TYPE 42

PVE5_HPV51
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
31-52

TYPE 51

PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
89-113

TYPE 5B

PVE5_RHPV1
PROBABLE E5 PROTEIN
RHESUS PAPILLOMAVIRUS
109-132

TYPE 1

PVE6_BPV1
56 PROTEIN
BOVINE PAPILLOMAVIRUS
23-41

TYPE 1

PVE6_CRPVK
E6 PROTEIN
COTTONTAIL RABBIT (SHOPE)
6-23

PAPILLOMAVIRUS (STRAIN KANSAS)

PVE6_HPV08
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
133-151

TYPE 8

PVE6_HPV2A
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
8-27

TYPE 2A

PVE6_HPV33
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
9-26

TYPE 33

PVE6_HPV35
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
9-26

TYPE 35

PVE6_HPV51
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
9-26

TYPE 51

PVE6_HPV57
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
8-27

TYPE 57

PVE6_HPV58
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
9-26

TYPE 58

PVE6_MMPV
E6 PROTEIN
MICROMYS MINUTUS
7-33
36-60

PAPILLOMAVIRUS

PVE7_CRPVK
E7 PROTEIN
COTTONTAIL RABBIT (SHOPE)
71-88

PAPILLOMAVIRUS (STRAIN KANSAS)

PVE7_HPV13
E7 PROTEIN
HUMAN PAPILLOMAVIRUS
77-93

TYPE 13

PVE7_HPV51
E7 PROTEIN
HUMAN PAPILLOMAVIRUS
61-87

TYPE 51

PVE7_HPV6B
E7 PROTEIN
HUMAN PAPILLOMAVIRUS
20-37

TYPE 6B

PVE7_RHPV1
E7 PROTEIN
RHESUS PAPILLOMAVIRUS
79-105

TYPE 1

PVE94_NPVAC
EARLY 94 KD PROTEIN
AUTOGRAPHA CALIFORNICA
78-99
203-222

NUCLEAR POLYHEDROSIS VIRUS

PVEF_GVTN
VIRAL ENHANCING FACTOR
TRICHOPLUSIA NI GRANULOSIS
154-175
237-260
677-696

VIRUS

PVENV_BEV
ENVELOPE PROTEIN
BERNE VIRUS
62-86
87-114

PVENV_DHV11
ENVELOPE GLYCOPROTEIN
DHORI VIRUS (STRAIN
42-57
484-511

PRECURSOR
INDIAN/1313/61)

PVENV_EAV
PROBABLE ENVELOPE
EQUINE ARTERITIS VIRUS
25-41

PROTEIN

PVENV_LELV
PROBABLE ENVELOPE
LELYSTAD VIRUS
27-47
148-168

PROTEIN

PVENNV_MCV1
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM
61-80

VIRUS SUBTYPE 1

PVENV_MCV2
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM
61-80
306-333

VIRUS SUBTYPE 1

PVENV_THOGV
ENVELOPE GLYCOPROTEIN
THOGOTO VIRUS
196-221
356-383
473-491

PRECURSOR

PVETM_NPVAC
ECORI-T SITE PROTEIN ETM
AUTOGRAPHA CALIFORNICA
82-105

NUCLEAR POLYHEDROSIS VIRUS

PVF05_VACCC
36 KD MAJOR MEMBRANE
VACCININA VIRUS (STRAIN
280-305

PROTEIN PRECURSOR
COPENHAGEN)

PVF05_VACCP
36 KD MAJOR MEMBRANE
VACCINIA VIRUS (STRAIN L-IVP)
280-305

PROTEIN PRECURSOR

PVF05_VACCV
36 KD MAJOR MEMBRANE
VACCINIA VIRUS (STRAIN WR)
281-306

PROTEIN PRECURSOR

PVF05_VARV
36 KD MAJOR MEMBRANE
VARIOLA VIRUS
280-305

PROTEIN PRECURSOR

PVF09_VACCC
PROTEIN F9
VACCINIA VIRUS (STRAIN
176-200

COPENHAGEN), AND

(STRAIN L-IVP)

PVF09_VACCV
PROTEIN F9
VACCINIA VIRUS (STRAIN WR)
176-200

PVF09_VARV
PROTEIN F9
VARIOLA VIRUS
176-200

PFV11_VACCC
PROTEIN F11
VACCINIA VIRUS (STRAIN
161-184

COPENHAGEN)

PVF11_VARV
PROTEIN F11
VARIOLA VIRUS
161-184

PVF15_VACCC
PROTEIN F15
VACCINIA VIRUS (STRAIN
25-48

COPENHAGEN)

PVF15_VACCP
PROTEIN F15
VACCINIA VIRUS (STRAIN L-IVP)
3-26

PVF15_VARV
PROTEIN F15
VARIOLA VIRUS
28-51

PVFP1_FOWPV
PROTEIN FP1
FOWLPOX VIRUS
297-333

PVFP2_FOWPV
PROTEIN FP2
FOWLPOX VIRUS
88-104

PVFP7_CAPVK
PROTEIN F7
CAPRIPOXIVIRUS (STRAIN KS-1)
89-111

PVFP7_FOWPV
PROTEIN FP7
FOWLPOX VIRUS
65-90

PVFP8_CAPVK
CF8A PROTEIN
CAPRIPOXVIRUS (STRAIN KS-1)
51-76

PVFUS_ORFNZ
10 KD FUSION PROTEIN
ORF VIRUS (STRAIN NZ2)
29-48

PVFUS_VACC6
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN
72-94

WR 65-16)

PVG01_HSVEB
HYPOTHETICAL GENE 1
EQUINE HERPESVIRUS TYPE 1
169-195

PROTEIN
(STRAIN AB4P)

PVG01_HSV11
HYPOTHETICAL GENE 1
ICTALURID HERPESVIRUS 1
210-225
317-339
589-616

PROTEIN

PVG01_VACCC
PROTEIN G1
VACCINIA VIRUS (STRAIN
298-318
376-395

COPENHAGEN)

PVG01_VACCV
PROTEIN G1
VACCINIA VIRUS (STRAIN WR)
237-257
315-334

PVG01_VARV
PROTEIN G1
VARIOLA VIRUS
298-318
376-395

PVG01_VZVD
HYPOTHETICAL GENE 1
VARICELLA-ZOSTER VIRUS
58-82

PROTEIN
(STRAIN DUMAS)

PVG03_VACCC
PROTEIN G3
VACCINIA VIRUS (STRAIN
50-72

COPENHAGEN)

PVG03_VARV
PROTEIN G3
VARIOLA VIRUS
50-72

PVG04_VACCC
PROTEIN G4
VACCINIA VIRUS (STRAIN
11-33

COPENHAGEN)

PVG04_VARV
PROTEIN G4
VARIOLA VIRUS
11-33

PVG06_VACCC
PROTEIN G6
VACCINIA VIRUS (STRAIN
31-51

COPENHAGEN)

PVG06_VARV
PROTEIN G6
VARIOLA VIRUS
31-51

PVG08_HSV11
HYPOTHETICAL GENE 8
ICTALURID HERPESVIRUS 1
134-149
159-185

MEMBRANE PROTEIN

PVG10_HSV11
HYPOTHETICAL GENE 10
ICTALURID HERPESVIRUS 1
35-54

MEMBRANE PROTEIN

PVG10_HSVSA
HERPESVIRUS SAIMIRI
HERPESVIRUS SAIMIRI
109-124
355-379

(STRAIN 11)

PVG11_HSV11
HYPOTHETICAL GENE 11
ICTALURID HERPESVIRUS 1
103-122
150-176

ZINE-BINDING PROTEIN

PVG12_HSV11
HYPOTHETICAL GENE 12
ICTALURID HERPESVIRUS 1
151-178
270-286

ZINC-BINDING PROTEIN

PVG12_HSVSA
HYPOTHETICAL GENE 12
HERPESVIRUS SAIMIRI
68-92

PROTEIN
(STRAIN 11)

PVG19_HSV11
HYPOTHETICAL GENE 19
ICTALURID HERPESVIRUS 1
88-112

MEMBRANE PROTEIN

PVG1L_AMEPV
G1L PROTEIN
AMSACTA MOOREI
313-336

ENTOMOPOXVIRUS

PVG1_SPV1R
CAPSID PROTEIN
SPIROPLASMA VIRUS
76-92
659-678

SPV1-R8A2 B

PVG22_HSV11
HYPOTHETICAL GENE 22
ICTALURID HERPESVIRUS 1
300-327

PROTEIN

PVG23_HSV11
HYPOTHETICAL GENE 23
ICTALURID HERPESVIRUS 1
314-335

PROTEIN

PVG27_HSV11
HYPOTHETICAL GENE 27
ICTALURID HERPESVIRUS 1
158-184

PROTEIN

PVG27_HSVSA
HYPOTHETICAL GENE 27
HERPESVIRUS SAIMIRI
209-226

PROTEIN
(STRAIN 11)

PVG28_HSV11
HYPOTHETICAL GENE 28
ICTALURID HERPESVIRUS 1
173-197
491-518

PROTEIN

PVG28_HSVSA
HYPOTHETICAL GENE 28
HERPESVIRUS SAIMIRI
14-40

PROTEIN
(STRAIN 11)

PVG29_HSV11
HYPOTHETICAL GENE 29
ICTALURID HERPESVIRUS 1
20-42

PROTEIN

PVG30_HSV11
HYPOTHETICAL GENE 30
ICTALURID HERPESVIRUS 1
166-191

PROTEIN

PVG32_VZVD
GENE 32 PROTEIN
VARICELLA-ZOSTER VIRUS
90-109

(STRAIN DUMAS)

PVG36_HSVSA
POSSIBLE TYROSINE-
HERPESVIRUS SAIMIRI
108-123
344-362

PROTEIN KINASE
(STRAIN 11)

PVG37_HSV11
HYPOTHETICAL GENE 37
ICTALURID HERPESVIRUS 1
284-299

PROTEIN

PVG39_HSV11
HYPOTHETICAL GENE 39
ICTALURID HERPESVIRUS 1
648-675
970-990
1038-1065

PROTEIN

PVG40_HSV11
HYPOTHETICAL GENE 40
ICTALURID HERPESVIRUS 1
14-32

PROTEIN

PVG41_HSV11
HYPOTHETICAL GENE 41
ICTALURID HERPESVIRUS 1
11-38
62-81
244-260

PROTEIN

PVG43_HSV11
HYPOTHETICAL GENE 43
ICTALURID HERPESVIRUS 1
109-133
157-178
322-345
521-538

PROTEIN

PVG46_HSV11
PROBABLE MAJOR
ICTALURID HERPESVIRUS 1
134-156
580-607
937-963
1244-1270

GLYCOPROTEIN

PVG48_HSV11
HYPOTHETICAL GENE 48
ICTALURID HERPESVIRUS 1
71-93

PROTEIN

PVG50_HSVSA
PROB TRANSCRIPTION
HERPESVIRUS SAIMIRI
5-30
58-83

ACTIVATOR EDRF1
(STRAIN 11)

PVG51_HSV11
HYP GENE 51 MEMBRANE
ICTALURID HERPESVIRUS 1
29-49
84-102

PROTEIN

PVG52_HSV11
HYPOTHETICAL GENE 52
ICTALURID HERPESVIRUS 1
229-252

PROTEIN

PVG55_HSV11
HYPOTHETICAL GENE 55
ICTALURID HERPESVIRUS 1
22-37
143-158
288-309

PROTEIN

PVG55_HSVSA
HYPOTHETICAL GENE 55
HERPESVIRUS SAIMIRI
85-106

PROTEIN
(STRAIN 11)

PVG56_HSV11
HYPOTHETICAL GENE 56
ICTALURID HERPESVIRUS 1
1155-1176

PROTEIN

PVG58_HSVSA
GENE 58 PROTEIN
HERPESVIRUS SAIMIRI
130-146
266-288
293-319
330-346

(STRAIN 11)

PVG59_HSV11
HYP GENE 59 MEMBRANE
ICTALURID HERPESVIRUS 1
142-161
267-289

PROTEIN

PVG5_SPV4
GENE 5 PROTEIN
SPIROPLASMA VIRUS 4
42-64

PVG60_HSV11
HYPOTHETICAL GENE 60
ICTALURID HERPESVIURS 1
30-51
53-75

PROTEIN

PVG61_HSV11
HYPOTHETICAL GENE 61
ICTALURID HERPESVIRUS 1
76-102
117-136

PROTEIN

PVG63_HSV11
HYPOTHETICAL GENE 63
ICTALURID HERPESVIRUS 1
238-259
336-363

PROTEIN

PVG64_HSV11
HYPOTHETICAL GENE 64
ICTALURID HERPESVIRUS 1
420-445

PROTEIN

PVG65_HSV11
HYPOTHETICAL GENE 65
ICTALURID HERPESVIRUS 1
117-137
155-173
362-378
518-533
1147-1174
1347-1369

PROTEIN

PVG67_HSV11
HYPOTHETICAL GENE 67
ICTALURID HERPESVIRUS 1
108-132
171-188
318-344
722-745> 1005-1029
1072-1091
1315-1341

PROTEIN

PVG6_SPVIR
GENE 6 PROTEIN
SPIROPLASMA VIRUS
60-82

SPV1-R8A2 B

PVG70_HSV11
HYPOTHETICAL GENE 70
ICTALURID HERPESVIRUS 1
184-209

PROTEIN

PVG71_HSVSA
HYPOTHETICAL GENE 63
HERPESVIRUS SAIMIRI
89-105

PROTEIN
(STRAIN 11)

PVG72_HSV11
HYPOTHETICAL GENE 72
ICTALURID HERPESVIRUS 1
445-471
535-561
720-744
1252-1269

PROTEIN

PVG74_HSVSA
G-PROTEIN COUPLED REC
HERPESVIRUS SAIMIRI
124-151

HOMOLOG ECRF3
(STRAIN 11)

PVG9_SPV1R
GENE 9 PROTEIN
SPIROPLASMA VIRUS
57-72

SPV1-R8A2 B

PVGF1_IBVB
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS
1587-1606
1856-1877
2108-2127
2210-2226
2788-2806
2973-2999
3073-3090
3120-3145
3374-3399

VIRUS (STRAIN BEAUDETTE)

3601-3625

PVGH3_HCMVA
GLYCOPROTEIN H301
HUMAN CYTOMEGALOVIRUS
157-178

PRECURSOR
(STRAIN AD169)

PVGL1_CVPR8
E1 GLYCOPROTEIN
PORCINE RESPIRATORY
174-193

PRECURSOR
CORONAVIRUS (STRAIN

86/137004/BRITISH IS)

PVGL2_CVBF
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
10-33
123-139
174-190
264-279
991-1017
1259-1280

PRECURSOR
(STRAIN F15)

PVGL2_CVBL9
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
123-139
174-190
264-279
651-674
991-1017
1259-1280

PRECURSOR
(STRAIN L9)

PVGL2_CVBLY
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
10-33
123-139
174-190
264-279
991-1017
1259-1280

PRECURSOR
(STRAIN LY-138)

PVGL2_CVBM
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
123-139
174-190
264-279
991-1017
1259-1280

PRECURSOR
(STRAIN MEBUS)

PVGL2_CVBQ
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
31-47
123-139
174-190
264-279
991-1017
1259-1280

PRECURSOR
(STRAIN QUEBEC)

PVGL2_CVBV
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
123-139
174-190
264-279
991-1017
1259-1280

PRECURSOR
(STRAIN VACCINE)

PVGL2_CVH22
E2 GLYCOPROTEIN
HUMAN CORONAVIRUS
768-794
1053-1071
1115-1134

PRECURSOR
(STRAIN 229E)

PVGL2_CVM4
E2 GLYCOPROTEIN
MURINE CORONAVIRUS
95-111
999-1025
1267-1290
1317-1338

PRECURSOR
(STRAIN WILD TYPE 4)

PVGL2_CVMA5
E2 GLYCOPROTEIN
MURINE CORONAVIRUS
95-111
947-973
1215-1238
1265-1286

PRECURSOR
(STRAIN A59)

PVGL2_CVMJC
E2 GLYCOPROTEIN
MURINE CORONAVIRUS
95-111
999-1025
1267-1290
1317-1358

PRECURSOR
(STRAIN JHMV/VARIANT CL-2)

PVGL2_CVMJH
E2 GLYCOPROTEIN
MURINE CORONAVIRUS
95-111
858-884
1126-1149
1176-1197

PRECURSOR
(STRAIN JHM)

PVGL2_CVPFS
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
64-83
442-457
800-816
1038-1064
1274-1297

PRECURSOR
GASTROENTERITIS CORONAVIRUS

(STRAI)

PVGL2_CVPMI
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
64-83
442-457
506-521
800-816
1038-1064
1274-1297

PRECURSOR
GASTROENTERITIS CORONAVIRUS

(STRAI)

PVGL2_CVPPR
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
64-83
440-455
504-519
798-814
1036-1062
1272-1295

PRECURSOR
GASTROENTERITIS CORONAVIRUS

(STRAI)

PVGL2_CVPPU
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
74-83
440-455
504-519
798-814
1036-1062
1272-1295

PRECURSOR
GASTROENTERITIS CORONAVIRUS

(STRAI)

PVGL2_CVPR8
E2 GLYCOPROTEIN
PORCINE RESPIRATORY
219-233
576-592
814-840
1050-1073

PRECURSOR
CORONAVIRUS (STRAI)

86/137004/BRITISH I

PVGL2_CVPRM
E2 GLYCOPROTEIN
PORCINE RESPIRATORY
218-233
576-592
814-840
1050-1073

PRECURSOR
CORONAVIRUS (STRAIN RM4)

PVGL2_CVPRT
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
64-83
440-455
504-519
798-814
1036-1062
1272-1295

PRECURSOR
GASTROENTERITIS CORONAVIRUS

(STRAI)

PVGL2_FIPV
E2 GLYCOPROTEIN
FELINE INFECTIOUS PERITONITIS
803-819
1041-1067
1277-1300

PRECURSOR
VIRUS (STRAIN 79-1146)

PVGL2_IBV6
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
196-219
588-607
771-797
1056-1081
1094-1111

PRECURSOR
VIRUS (STRAIN 6/82)

PVGL2_IBVB
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
195-218
587-606
770-796
1055-1080

PRECURSOR
VIRUS (STRAIN BEAUDETTE)

PVGL2_IBVD2
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
196-219
588-607
771-797
1056-1081

PRECURSOR
VIRUS (STRAIN D274) (

PVGL2_IBVD3
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
196-219

PRECURSOR
VIRUS (STRAIN D3896)

PVGL2_IBVK
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
195-218
587-606
770-796
1055-1080

PRECURSOR
VIRUS (STRAIN KB8523)

PVGL2_IBVM
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
195-218
378-398
587-606
770-796
1055-1080

PRECURSOR
VIRUS (STRAIN M41)

PVGL2_IBVU1
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
178-201

VIRUS (STRAIN UK/123/82)

PVGL2_IBVU2
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
178-201

VIRUS (STRAIN UK/142/86)

PVGL2_IBVU3
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
178-201

VIRUS (STRAIN UK/167/84)

PVGLB_EBV
GLYCOPROTEIN GP110
EPSTEIN-BARR VIRUS
732-752

PRECURSOR
(STRAIN B95-8)

PVGLB_HCMVA
GLYCOPROTEIN B
HUMAN CYTOMEGALOVIRUS
535-558
706-732
750-777

PRECURSOR
(STRAIN AD169)

PVGLB_HCMVT
GLYCOPROTEIN B
HUMAN CYTOMEGALOVIRUS
536-559
707-733
751-778

PRECURSOR
(STRAIN TOWNE)

PVGLB_HSV11
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
83-104

PRECURSOR
(TYPE 1/STRAIN 17)

PVGLB_HSV1F
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
82-103

PRECURSOR
(TYPE 1/STRAIN F)

PVGLB_HSV1K
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
82-103

PRECURSOR
(TYPE 1/STRAIN KOS)

PVGLB_HSV1P
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
83-104

PRECURSOR
(TYPE 1/STRAIN PATTON)

PVGLB_HSV23
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
79-99

PRECURSOR
(TYPE 2/STRAIN 333)/

PVGLB_HSV2H
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
79-99

PRECURSOR
(TYPE 2/STRAIN HG52)

PVGLB_HSV2S
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
65-85

PRECURSOR
(TYPE 2/STRAIN 54A)

PVGLB_HSV6U
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
72-92
117-144

(FRAGMENT)
(TYPE 6/STRAIN UGANDA-1102)

PVGLB_HSVB1
GLYCOPROTEIN 1
BOVINE HERPESVIRUS TYPE 1
560-578
689-707

PRECURSOR

PVGLB_HSVB2
GLYCOPROTEIN B-1
BOVINE HERPESVIRUS TYPE 2
279-299
745-767

PRECURSOR
(STRAIN BMV) (BOVINE

MAMMILLITIS)

PVGLB_HSVBC
GLYCOPROTEIN 1
BOVINE HERPESVIRUS TYPE 1
692-710

PRECURSOR
(STRAIN COPPER)

PVGLB_HSVE1
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
736-753

PRECURSOR
(ISOLATE HVS25A) (EHV-1)

PVGLB_HSVE4
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
675-692

PRECURSOR
(STRAIN AB1)

PVGLB_HSVEA
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
736-753

PRECURSOR
(STRAIN AB1)

PVGLB_HSVEB
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
736-753

PRECURSOR
(STRAIN AB4P)

PVGLB_HSVEL
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
736-753

PRECURSOR
(STRAIN KENTUCKY D)

PVGLB_HSVMD
GLYCOPROTEIN B
MAREK'S DISEASE HERPESVIRUS
589-613

PRECURSOR
(STRAIN RB-1B)

PVGLB_HSVSA
GLYCOPROTEIN B
HERPESVIRUS SAIMIRI
483-506
584-602
701-716

PRECURSOR
(STRAIN 11)

PVGLB_ILTV6
GLYCOPROTEIN B
INFECTIOUS LARYNGOTRACHEI-
256-275
597-621
740-758

PRECURSOR
TIS VIRUS (STRAIN 632)

PVGLB_ILTVS
GLYCOPROTEIN B
INFECTIOUS LARYNGOTRACHEI-
266-285
607-631
750-768

PRECURSOR
TIS VIRUS (STRAIN SA-2)

PVGLB_ILTVT
GLYCOPROTEIN B
INFECTIOUS LARYNGOTRACHEI-
266-285
607-631
750-768

PRECURSOR
TIS VIRUS (STRAIN THRONE V882)

PVGLB_MCMVS
GLYCOPROTEIN B
MURINE CYTOMEGALOVIRUS
135-156
566-589
738-765

PRECURSOR
(STRAIN SMITH)

PVGLB_PRVIF
GLYCOPROTEIN GII
PSEUDORABIES VIRUS (STRAIN
203-218

PRECURSOR
INDIANA-FUNKHAUSER/BECKER)

PVGLB_VZVD
GLYCOPROTEIN B
VARICELLA-ZOSTER VIRUS
522-538

PRECURSOR
(STRAIN DUMAS)

PVGLC_HSV11
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
3-22
467-493

PRECURSOR
(TYPE 1/STRAIN 17)

PVGLC_HSV1K
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
3-22
467-491

PRECURSOR
(TYPE 1/STRAIN 17)

PVGLV_HSV2
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
435-458

PRECURSOR
(TYPE 2)

PVGLC_HSV23
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
436-459

PRECURSOR
(TYPE 2/STRAIN 333)

PVGLC_HSVBC
GLYCOPROTEIN GII
BOVINE HERPESVIRUS TYPE 1
475-494

PRECURSOR
(STRAIN COOPER)

PVGLC_HSVE4
GLYCOPROTEIN C
EQUINE HERPESVIRUS TYPE 4
444-459

PRECURSOR
(STRAIN 1942)

PVGLC_HSVEB
GLYCOPROTEIN C
EQUINE HERPESVIRUS TYPE 1
427-442

PRECURSOR
(STRAIN AB4P) AND

(STRAIN KENTUCKY)

PVGLC_HSVMB
SECRETORY GLYCOPROTEIN
MAREK'S DISEASE HERPESVIRUS
399-421

GP57-65 PRECURSOR
(STRAIN BC-1)

PVGLC_HSVMD
SECRETORY GLYCOPROTEIN
MAREK'S DISEASE HERPESVIRUS
399-421

GP57-65 PRECURSOR
(STRAIN RB-1B)

PVGLC_HSVMG
SECRETORY GLYCOPROTEIN
MAREK'S DISEASE HERPESVIRUS
398-420

GP57-65 PRECURSOR
(STRAIN GA)

PVGLC_HSVMM
SECRETORY GLYCOPROTEIN
MAREK'S DISEASE HERPESVIRUS
399-421

GP57-65 PRECURSOR
(STRAIN MD5)

PVGLC_PRVIF
GLYCOPROTEIN GIII
PSEUDORABIES VIRUS (STRAIN
180-197
446-472

PRECURSOR
INDIANA-FUNKHAUSER/BECKER)

PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS
431-449

(STRAIN DUMAS)

PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS
431-449

(STRAIN SCOTT)

PCGLD_HSV11
GLYCOPROTEIN D
HERPES SIMPLEX VIRUS
79-94

PRECURSOR
(TYPE 1/STRAIN 17), AND

(TYPE 1/STRAIN

PVGLD_HSV2
GLYCOPROTEIN D
HERPES SIMPLEX VIRUS
79-94

PRECURSOR
(TYPE 2)

PVGLE_HSV11
GLYCOPROTEIN E
HERPES SIMPLEX VIRUS
104-129
413-437

PRECURSOR
(TYPE 1/STRAIN 17)

PVGLE_VZVD
GLYCOPROTEIN E
VARICELLA-ZOSTER VIRUS
469-493

PRECURSOR
(STRAIN DUMAS)

PFGLF_BRSVA
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
205-221
265-287
482-504

PRECURSOR
SYNCYTIAL VIRUS (STRAIN

A51908)

PVGLF_BRSVC
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
205-221
265-280
284-506

PRECURSOR
SYNCYTIAL VIRUS (STRAIN

COPENHAGEN)

PVGLF_BRSVR
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
205-221
265-280
484-506

PRECURSOR
SYNCYTIAL VIRUS (STRAIN

RB94)

PVGLF_CDVO
FUSION GLYCOPROTEIN
CANINE DISTEMPER VIRUS
336-361
398-414
562-589

PRECURSOR
(STRAIN ONDERSTEPOORT)

PVGLF_HRSV1
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
205-221
265-280
484-506

PRECURSOR
SYNCYTIAL VIRUS (SUBGROUP B/

STRAIN 185)

PVGLF_HRSVA
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
205-221
265-280
484-506

PRECURSOR
SYNCYTIAL VIRUS (STRAIN A2)

PVGLF_HRSVL
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
205-221
265-280
484-506

PRECURSOR
SYNCYTIAL VIRUS (SUBGROUP A/

STRAIN LO)

PVGLF_HRSVR
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
205-221
265-280
484-506

PRECURSOR
SYNCYTIAL VIRUS (STRAIN RSS-2)

PVGLF_MEASE
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN
224-245
286-302
451-477

PRECURSOR
EDMONSTON) and (STRAIN

HALLE)

PVGLF_MEAS1
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN IP-3-CA)
227-248
289-305
454-480

PRECURSOR

PVGLF_MEASY
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN
224-245
286-302
451-477

PRECURSOR
YAMAGATA-1)

PVGLF_MUMP1
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL-1)
5-20
276-292
446-467

PRECURSOR

PVGLF_MUMPM
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN
276-292
446-467

PRECURSOR
MIYAHARA VACCINE)

PVGLF_MUMPR
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN RW)
276-292
446-467

PRECURSOR

PVGLF_MUMPS
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL)
5-20
276-292
446-467

PRECURSOR

PVGLF_NDVA
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN AUSTRALIA-

VICTORIA/32)

PVGLF_NDVB
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN BEAUDETTE C/45)

PVGLF_NDVH3
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN HER/33)

PVGLF_NDVH4
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN B1-HITCHNER/47)

PVGLF_NDVL
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN LAS/46)

PVGLF_NDVM
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN MIYADERA/51)

PVGLF_NDVQ
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN QUEENSLAND/66)

PVGLF_NDVT
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN TEXAS)

PVGLF_NDTVG
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN TEXAS G B/48)

PVGLF_NDVU
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289

PRECURSOR
(STRAIN ULSTER/67)

PVGLF_PHODV
FUSION GLYCOPROTEIN
PHOCINE DISTEMPER VIRUS
269-285
305-326
367-383
531-558

PRECURSOR

PVGLF_P11HC
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
456-477

PRECURSOR
(STRAIN C39)

PVGLF_P12H
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
450-471

PRECURSOR
(PIV-2)

PVGLF_P12HG
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
450-471

PRECURSOR
(STRAIN GREER)

PVGLF_P12HT
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
450-471

PRECURSOR
(STRAIN TOSHIBA)

PVGLF_P13B
FUSION GLYCOPROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
405-426
453-474

PRECURSOR

PVGLF_P13H4
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
2-20
283-310
453-474

PRECURSOR
(STRAIN N1H 47885)

PVGLF_RINDK
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN
220-241
282-298
447-473

PRECURSOR
KABETE O)

PVGLF_RINDL
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN L)
220-241
282-298
447-473

PRECURSOR

PVGLF_SEND5
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN Z/
460-481

PRECURSOR
HOST MUTANTS)

PVGLF_SENDF
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN FUSHIMI)
460-481

PRECURSOR

PVGLF_SENDH
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HARRIS)
460-481

PRECURSOR

PVGLF_SENDJ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HVJ)
460-481

PRECURSOR

PVGLF_SENDZ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN 2)
460-481

PRECURSOR

PCGLF_SV41
FUSION GLYCOPROTEIN
SIMIAN VIRUS 41
453-474

PRECURSOR

PVGLF_SV5
FUSION GLYCOPROTEIN
SIMIAN VIRUS 5 (STRAIN W3)
401-425
446-467

PRECURSOR

PVGLF_TRTV
FUSION GLYCOPROTEIN
TURKEY RHINOTRACHEITIS
175-191
452-474

PRECURSOR
VIRUS

PVGLG_INHV
SPIKE GLYCOPROTEIN
INFECTIOUS HEMATOPOIETIC
77-99

PRECURSOR
NECROSIS VIRUS (STRAIN

ROUND BUT)

PVGLG_RABVE
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN ERA)
454-474

PRECURSOR

PVGLG_RABVH
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN
372-391
454-474

PRECURSOR
HEP-FLURY)

PVGLG_RABVP
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN PV)
454-474

PRECURSOR

PVGLG_RABVS
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN SAD B19)
454-474

PRECURSOR

PVGLG_RABVT
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN STREET)
454-474

PRECURSOR

PVGLG_TRTV
MAJOR SURFACE
TURKEY RHINOTRACHEITIS
199-216

GLYCOPROTEIN G
VIRUS

PVGLG_VHSV0
SPIKE GLYCOPROTEIN
VIRAL HEMORRHAGIC
406-428

PRECURSOR
SEPTICEMIA VIRUS (STRAIN 07-71)

PVGLH_HCMVA
GLYCOPROTEIN H
HUMAN CYTOMEGALOVIRUS
211-237
365-382
574-598
691-712

PRECURSOR
(STRAIN AD169)

PVGLH_HCMVT
GLYCOPROTEIN H
HUMAN CYTOMEGALOVIRUS
210-236
364-381
573-597
690-711

PRECURSOR
(STRAIN TOWNE)

PVGLH_HSV11
GLYCOPROTEIN H
HERPES SIMPLEX VIRUS
245-262
443-467
803-827

PRECURSOR
(TYPE 1/STRAIN 17)

PVGLH_HSV1E
GLYCOPROTEIN H
HERPES SIMPLEX VIRUS
245-262
443-467
803-827

PRECURSOR
(TYPE 1/STRAIN HFEM)

PVGLH_HSV6G
GLYCOPROTEIN H
HERPES SIMPLEX VIRUS
314-332

PRECURSOR
(TYPE 6/STRAIN GS)

PVGLH_HSVE4
GLYCOPROTEIN H
EQUINE HERPESVIRUS TYPE 4
304-325
814-839

PRECURSOR
(STRAIN 1942)

PVGLH_HSVEB
GLYCOPROTEIN H
EQUINE HERPESVIRUS TYPE 1
297-318
807-832

PRECURSOR
(STRAIN AB4P) and (ISOLATE

HVS25A)

PVGLH_HSVSA
GLYCOPROTEIN H
HERPESVIRUS SAIMIRI
454-479
658-679

PRECURSOR
(STRAIN 11)

PVGLH_MCMVS
GLYCOPROTEIN H
MURINE CYTOMEGALOVIRUS
670-690

PRECURSOR
(STRAIN SMITH)

PVGL1_HCMVA
IE GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS
158-180

PRECURSOR
(STRAIN AD169)

PVGLI_HSV11
GLYCOPROTEIN I
HERPES SIMPLEX VIRUS
43-60

(TYPE 1/STRAIN 17)

PVGLI_HSVEB
GLYCOPROTEIN I
EQUINE HERPESVIRUS TYPE 1
44-63

PRECURSOR

PVGLI_VZVD
GLYCOPROTEIN I
VARICELLA-ZOSTER VIRUS
278-297

(STRAIN DUMAS)

PVGLM-BUNGE
M POLYPROTEIN
BUNYAVIRUS GERMISTON
117-136
197-222

PRECURSOR

PVGLM_BUNL7
M POLYPROTEIN
BUNYAVIRUS LA CROSSE
31-55
81-98
190-211
1325-1345
1387-1401

PRECURSOR
(ISOLATE L74)

PVGLM_BUNSH
M POLYPROTEIN
BUNYAVIRUS SNOWSHOE HARE
31-55
81-98
190-211
1325-1345
1387-1410

PRECURSOR

PVGLM_BUNYW
M POLYPROTEIN
BUNYAMWERA VIRUS
193-218
1379-1404

PRECURSOR

PVGLM_DUGBV
M POLYPROTEIN
DUGBE VIRUS

PRECURSOR

PVGLM_HANTB
M POLYPROTEIN
HANTAAN VIRUS (STAIN B-1)
355-371
692-717
900-915
999-1019

PRECURSOR

PVGLM_HANTH
M POLYPROTEIN
HANTAAN VIRUS (STRAIN HOJO)
499-515
694-718
1000-1020

PRECURSOR

PVGLM_HANTL
M POLYPROTEIN
HANTAAN VIRUS (STRAIN LEE)
499-515
694-719
1001-1021

PRECURSOR

PVGLM_HANTV
M POLYPROTEIN
HANTAAN VIRUS (STRAIN 76-118)
499-515
694-719
1001-1021

PRECURSOR

PVGLM_INSV
M POLYPROTEIN
IMPATIENS NECROTIC SPOT
18-44
269-293
348-367
531-551
815-841

PRECURSOR
VIRUS (INSV)

PVGLM_PHV
M POLYPROTEIN
PROSPECT HILL VIRUS
152-171

PRECURSOR

PVGLM_PTPV
M POLYPROTEIN
PUNTA TORO PHLEBOVIRUS
743-765
997-1016
1275-1302

PRECURSOR

PVGLM_PUUMH
M POLYPROTEIN
PUUMALA VIRUS (STRAIN
155-174
509-525
712-729

PRECURSOR
HALLNAS B1)

PVGLM_PUUMS
M POLYPROTEIN
PUUMALA VIRUS (STRAIN
155-174
509-525
712-729
1092-1117

PRECURSOR
SOTKAMO)

PVGLM_RVRF
M POLYPROTEIN
RIFT VALLEY FEVER VIRUS
53-80
344-368
830-856

PRECURSOR

PVGLM_RVFVZ
M POLYPROTEIN
RIFT VALLEY FEVER VIRUS
53-80
344-368
830-856
1156-1176

PRECURSOR
(STRAIN ZH-548-M12)

PVGLM_SEOU8
M POLYPROTEIN
SEOUL VIRUS (STRAIN 80-39)
355-371
692-717
900-915
999-1019

PRECURSOR

PVGLM_SEOUR
M POLYPROTEIN
SEOUL VIRUS (STRAIN R22)
355-371
693-718
901-916
1000-1020

PRECURSOR

PVGLM_SEOUS
M POLYPROTEIN
SEOUL VIRUS (STRAIN ST-11)
355-371
692-717
900-915
999-1019

PRECURSOR
(SAPPORO RAT VIRUS)

PVGLM_UUK
M POLYPROTEIN
UUKUNIEMI VIRUS
561-585
655-674
826-842
925-952
966-989

PRECURSOR

PVGLP_VEB
PEPLOMER GLYCOPROTEIN
BERNE VIRUS
430-452
869-885
1099-1124
1546-1568

PRECURSOR

PVGLX_HSVEB
GLYCOPROTEIN X
EQUINE HERPESVIRUS TYPE 1

(STRAIN AB4P)

PVGLX_HSVEK
GLYCOPROTEIN GX
EQUINE HERPESVIRUS TYPE 1

PRECURSOR
(STRAIN KENTUCKY A)

PVGLX_HSVEL
GLYCOPROTEIN GX
EQUINE HERPESVIRUS TYPE 1

(STRAIN KENTUCKY A)

PVGLX_PRVR1
SECRETED GLYCOPROTEIN
PESUDORABIES VIRUS
149-176

GX
(STRAIN RICE)

PVGLY_JUNIN
GLYCOPROTEIN
JUNIN AREANVIRUS
12-38

POLYPROTEIN PRECURSOR

PVGLY_LASSG
GLYCOPROTEIN
LASSA VIRUS (STRAIN GA39)
12-35
238-259
427-449

POLYPROTEIN PRECURSOR

PVGLY_LASSJ
GLYCOPROTEIN
LASSA VIRUS (STRAIN JOSIAH)
12-35
238-259
427-449

POLYPROTEIN PRECURSOR

PVGLY_LYCVA
GLYCOPROTEIN
LYMPHOCYTIC
12-35

POLYPROTEIN PRECURSOR
CHORIOMENINGITIS VIRUS

(STRAIN ARMSTRONG)

PVGLY_LYCVW
GLYCOPROTEIN
LYMPHOCYTIC
12-35
89-108

POLYPROTEIN PRECURSOR
CHORIOMENINGITIS VIRUS

(STRAIN WE)
GLYCOPROTEIN
MOPEIA VIRUS
12-35
425-447

POLYPROTEIN PRECURSOR

PVGLY_PIARV
GLYCOPROTEIN
PICHINDE AREANVIRUS
12-38
441-466

POLYPROTEIN PRECURSOR

PVGLY_TACV
GLYCOPROTEIN
TACARIBE VIRUS
12-38

POLYPROTEIN PRECURSOR

PVGLY_TACV5
GLYCOPROTEIN
TACARIBE VIRUS (STRAIN V5)
12-38

POLYPROTEIN PRECURSOR

PVGLY_TACV7
GLYCOPROTEIN
TACARIBE VIRUS (STRAIN V7)
12-38

POLYPROTEIN PRECURSOR

PVGLY_TACVT
GLYCOPROTEIN
TACARIBE VIRUS (STRAIN TRVL
12-38

POLYPROTEIN PRECURSOR
11598)

PVGNB_CPMV
GENOME POLYPROTEIN B
COWPEA MOSAIC VIRUS
141-161
569-594
757-783
1110-1135
1165-1184

PVGNM_CPMN
GENOME POLYPROTEIN M
COWPEA MOSAIC VIRUS
311-335
741-764

PVGP2_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
657-681

ANTIGEN GP220
B95-8) (HUMAN HERPESVIRUS 4)

PVGP3_EBV
ENVELOPE
EPSTEIN-BARR VIRUS (STRAIN
854-878

GLYCOPROTEIN GP340
B95-8) (HUMAN HERPESVIRUS 4)

PVGP8_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
67-88

ANTIGEN GP85
B95-8) (HUMAN HERPESVIRUS 4)

PVGP_EBOV
STRUCTURAL
EBOLA VIRUS
34-52
537-561
653-675

GLYCOPROTEIN PRECURSOR

PVGP_MABVM
STRUCTURAL
MARBURG VIRUS (STRAIN
538-562
607-627

GLYCOPROTEIN PRECURSOR
MUSOKE)

PVGP_MAMVP
STRUCTURAL
MARBURG VIRUS (STRAIN POPP)
538-562
607-627

GLYCOPROTEIN PRECURSOR

PVH01_VACCC
PROTEIN-TYROSINE
VACCINIA VIRUS (STRAIN
76-92
105-121

PHOSPHATASE
COPENHAGEN)

PVH01_VACCV
PROTEIN-TYROSINE
VACCINIA VIRUS (STRAIN WR)
76-92
105-121

PHOSPHATASE

PVHO1_VARV
PROTEIN-TYROSINE
VARIOLA VIRUS
76-92
105-121

PHOSPHATASE

PVH07_VACCV
LATE PROTEIN H7
VACCINIA VIRUS (STRAIN WR)
70-97

PVH07_VARV
LATE PROTEIN H7
VARIOLA VIRUS
70-97

PVHEL_FXMV
PROBABLE HELICASE
FOXTAIL MOSAIC VIRUS
182-205

PVHEL_PMV
PROBABLE HELICASE
PAPAYA MOSAIC POTEXVIRUS
153-168

PV101_VACCC
PROTEIN I1
VACCINIA VIRUS (STRAIN
120-135

COPENHAGEN)

PV101_VARB
PROTEIN I1
VARIOLA VIRUS
120-135

PV103_VACCC
PROTEIN I3
VACCINIA VIRUS (STRAIN
194-220

COPENHAGEN)

PV103_VACCV
PROTEIN I3
VACCINIA VIRUS (STRAIN WR)
104-220

PV103_VARV
PROTEIN I3
VARIOLA VIRUS
194-220

PV106_VACCV
PROTEIN I6
VACCINIA VIRUS (STRAIN WR)
106-128
133-155

PV106_VARV
PROTEIN I6
VARIOLA VIRUS
106-128
133-155

PV107_VACCC
PROTIEN I7
VACCINIA VIRUS (STRAIN
13-34
344-367

COPENHAGEN)

PV107_VACCV
PROTEIN I7
VACCINIA VIRUS (STRAIN WR)
13-34
344-367

PV107_VARV
PROTEIN I7
VARIOLA VIRUS
13-34
344-367

PV108_VACCC
PUTATIVE RNA
VACCINIA VIRUS (STRAIN
196-212
418-438

HELICASE 18
COPENHAGEN)

PV108_VACCV
PUTATIVE RNA
VACCINIA VIRUS (STRAIN WR)
196-212
418-438

HELICASE 18

PV108_VARV
PUTATIVE RNA
VARIOLA VIRUS
196-212
418-438

HELICASE 18

PVIE1_HCMVA
55 KD IMMEDIATE-EARYLY
HUMAN CYTOMEGALOVIRUS
77-100
333-350

PROTEIN 1
(STRAIN AD169)

PVIE1_HCMVT
55 KD IMMEDIATE-EARYLY
HUMAN CYTOMEGALOVIRUS
77-100
333-350

PROTEIN 1
(STRAIN AD169)

PVIE2_HCMVA
45 KD IMMEDIATE-EARYLY
HUMAN CYTOMEGALOVIRUS
14-32
389-406

PROTEIN 2
(STRAIN AD169)

PVIE2_HCMVT
45 KD IMMEDIATE-EARYLY
HUMAN CYTOMEGALOVIRUS
14-32
388-405

PROTEIN 2
(STRAIN TOWNE)

PVIE2_MCMVS
IMMEDIATE-EARLY
MUTINE CYTOMEGALOVIRUS
251-272

PROTEIN 2
(STAIN SMITH)

PVIE3_HCMVT
30 KD IMMEDIATE-EARLY
HUMAN CYTOMEGALOVIRUS
14-32

PROTEIN 2
(STRAIN TOWNE)

PVIEN_NPVAC
IMMEDIATE-EARLY
AUTOGRAPHA CALIFORNICA
100-116
273-290

PROTEIN 1E-N
NUCLEAR POLYHEDROSIS VIRUS

PVIMP_EBV
PROB INTEGRAL MEMBRANE
EPSTEIN-BARR VIRUS
75-100
125-152
203-222

PROTEIN BBRF3
(STRAIN B95-8)

PVIMP_HCMVA
PROBABLE INTEGRAL
HUMAN CYTOMEGALOVIRUS
68-89
190-217

MEMBRANE PROTEIN
(STRAIN AD169)

PVIMP_HSV11
PROBABLE INTEGRAL
HERPES SIMPLEX VIRUS
83-110
250-270

MEMBRANE PROTEIN
(TYPE 1/STRAIN 17)

PVIMP_HSVEB
PROBABLE INTEGRAL
EQUINE HERPESVIRUS TYPE 1
24-49
93-120
145-172
247-263
301-321
332-358

MEMBRANE PROTEIN
(STRAIN AB4P)

PVIMP_HSVSA
INTEGRAL MEMBRANE
HERPESVIRUS SAIMIRI
76-101
313-331

PROTEIN
(STRAIN 11)

PVIMP_VZVD
PROBABLE INTEGRAL
VARICELLA-ZOSTER VIRUS
21-47
154-181
230-252

MEMBRANE PROTEIN
(STRAIN DUMAS)

PVJ01_VACCC
PROTEIN J1
VACCINIA VIRUS (STRAIN
89-110

COPENHAGEN)

PVJ01_VACCV
PROTEIN J1
VACCINIA VIRUS (STRIAN WR)
89-110

PVJ01_VARV
PROTEIN J1
VARIOLA VIRUS
89-110

PVK04_VACCC
PROTEIN K4
VACCINIA VIRUS (STRAIN
87-113
208-234
319-337

COPENHAGEN)

PVK04_VACCV
PROTEIN K4
VACCINIA VIRUS (STRAIN WR)
87-113
208-234
319-337

PVK05_VACCC
PROTEIN K5
VACCINIA VIRUS (STRAIN
106-133

COPENHAGEN)

PVL02_VACCC
PROTEIN L2
VACCINIA VIRUS (STRAIN
39-61

COPENHAGEN)

PVL02_VACCV
PROTEIN L2
VACCINIA VIRUS (STRAIN WR)
39-61

PVL02_VARV
PROTEIN L2
VARIOLA VIRUS
39-61

PVL03_VACCC
PROTEIN L3
VACCINIA VIRUS (STRAIN
148-164
186-208
292-315

COPENHAGEN)

PVL03_VACCV
PROTEIN L3
VACCINIA VIRUS (STRAIN WR)
148-164
186-208
292-315

PVL03_VARV
PROTEIN L3
VARIOLA VIRUS
147-163
/ 185-207
291-314

PVL05_VACCV
PROTEIN L5
VACCINIA VIRUS (STRAIN WR),
16-39

AND (STRAIN COPENHAGEN)

PVL05_VARV
PROTEIN L5
VARIOLA VIRUS
16-39

PVL1_CRPVK
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE)
299-317

PAPILLOMAVIRUS (STRAIN

KANSAS)

PVL1_HPV18
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
28-55

TYPE 18

PVL1_HPV41
PROBABLE L1 PROTEIN
HUMAM PAPILLOMAVIRUS
38-63

TYPE 41

PVL1_REOVD
MAJOR CORE PROTEIN
REOVIRUS (TYPE 3/STRAIN
327-346
351-366
752-774

LAMBDA 1
DEARING)

PVL2_HPV08
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
254-270

TYPE 8

PVL2_HPV11
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
32-58

TYPE 11

PVL2_HPV13
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59

TYPE 13

PVL2_HPV16
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
34-60

TYPE 16

PVL2_HPV18
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59

TYPE 18

PVL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
213-228

TYPE 1A

PVL2_HSV2A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
88-114

TYPE 2A

PVL2_HPV31
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
34-60
443-462

TYPE 31

PVL2_HPV33
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59
99-114

TYPE 33

PVL2_HPV35
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
34-60

TYPE 35

PVL2_HPV41
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
39-58
414-436

TYPE 41

PVL2_HPV42
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59
344-370

TYPE 42

PVL2_HPV47
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
250-265

TYPE 47

PVL2_HPV57
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
32-58

TYPE 57

PVL2_HPV58
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59
99-114

TYPE 58

PVL2_HPV6B
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59

TYPE 6B

PVL2_PAPVE
PROBABLE L2 PROTEIN
EUROPEAN ELK
30-56

PAPILLOMAVIRUS

PVL2_RHPV1
PROBABLE L2 PROTEIN
RHESUS PAPILLOMAVIRUS
45-71

TYPE 1

PVL3_HPV5B
PROBABLE L3 PROTEIN
HUMAN PAPILLOMAVIRUS
6-28

TYPE 5B

PVL3_REOVD
MINOR CORE PROTEIN
REOVIRUS (TYPE 3/STRAIN
714-737

LAMBDA 3
DEARING

PVL3_REOVJ
MINOR CORE PROTEIN
REOVIRUS (TYPE 2/STRAIN
714-737
1213-1236

LAMBDA 3
D5/JONES)

PVL3_REOVL
MINOR CORE PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
714-737

LAMBDA 3

PVL96_IRV1
L96 PROTEIN
TIPULA IRIDESCENT VIRUS (TIV)
144-170
196-220
686-711
845-861

(INSECT IRIDESCENT VIRUS

TYPE 1)

PVM01_VACCC
PROTEIN M1
VACCINIA VIRUS (STRAIN
134-159
177-195
281-302

COPENHAGEN)

PVM01_VACCV
PROTEIN M1
VACCINIA VIRUS (STRAIN WR)
83-108
126-144
230-251

PVM01_VARV
PROTEIN M1
VARIOLA VIRUS
81-106
124-142
228-249

PVM1_REOVD
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
141-168
227-245
280-304
324-347
414-436
454-477

PROTEIN MU-2
DEARING)

PVM1_REOVL
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
141-168
227-245
280-304
414-436
454-477

PROTEIN MU-2

PVM21_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
168-192

PROTEIN MU-1/MU-1C
DEARING)

PVM22_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
168-192

PROTEIN MU-1/MU-1C
DEARING)

PVM2_REOVJ
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
168-192

PROTEIN MU-1/MU-1C
D5/JONES)

PVM2_REOVL
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
168-192

PROTEIN MU-1/MU-1C
LANG)

PVM3_REOVD
MAJOR NONSTRUCTURAL
REOVIRUS (TYPE 3/STRAIN
304-326
521-540

PROTEIN MU-NS
DEARING)

PVMAT_BRSVA
MATRIX PROTEIN
BOVINE RESPIRATORY
37-62

SUNCYTIAL VIRUS (STRAIN

A51908)

PVMAT_CDVO
MATRIX PROTEIN
CANINE DISTEMPER VIRUS
148-165
283-309

(STRAIN COPENHAGEN)

PVMAT_HRSVA
MATRIX PROTEIN
HUMAN RESPIRATORY
44-62
139-160

SYNCYTIAL VIRUS (STRAIN A2)

PVMAT_LPMV
MATRIX PROTEIN
LA PIEDAD-MICHOACAN-MEXICO
311-338

VIRUS

PVMAT_MEASE
MATRIX PROTEIN
MEASLES VIRUS (STRAIN
283-309

EDMONSTON)

PVMAT_MEASH
MATRIX PROTEIN
MEASLES VIRUS (STRAIN
283-309

HALLE)

PVMAT_MEASI
MATRIX PROTEIN
MEASLES VIRUS (STRAIN
87-111

IP-3-CA)

PVMAT_MEASU
MATRIX PROTEIN
MEASLES VIRUS (STRAIN HU2)
283-309

PVMAT_MUMP1
MATRIX PROTEIN
MUMPS VIRUS (STRAIN SBL-1)
191-207
227-250
310-330

PVMAT_MUMPS
MATRIX PROTEIN
MUMPS VIRUS (STRAIN SBL)
191-207
227-250
310-330

PVMAT_NDVA
MATRIX PROTEIN
NEWCASTLE DIESEASE VIRUS
135-151
190-208
309-329

(STRAIN AUSTRAULIA-

VICTORIA/32)

PVMAT_NDVB
MATRIX PROTEIN
NEWCASTLE DIESEASE VIRUS
135-151
190-208
309-329

(STRAIN BEAUDETTE C/45)

PVMAT_PIIHC
MATRIX PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
195-217

(STRAIN C39)

PVMAT_P12HT
MATRIX PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
132-154
189-205
308-328

(STRAIN TOSHIBA) (PIV-2)

PVMAT_P14HA
MATRIX PROTEIN
HUMAN PARAINFLUENZA 4A
312-332

VIRUS (STRAIN TOSHIBA) (PIV-4A)

PVMAT_P14HB
MATRIX PROTEIN
HUMAN PARAINFLUENZA 4B
312-332

VIRUS (STRAIN 68-333) (PIV-4B)

PVMAT_RINDK
MATRIX PROTEIN
RINDERPEST VIRUS (STRAIN
200-221
239-260
283-309

KABETE O)

PVMAT_SENDF
MATRIX PROTEIN
SENDAI VIRUS (STRAIN FUSHIMI)
195-217

PVMAT_SENDH
MATRIX PROTEIN
SENDAI VIRUS (STRAIN HARRIS)
195-217

PVMAT_SENDZ
MATRIX PROTEIN
SENDAI VIRUS (STRAIN Z)
195-217

PVMAT_SSPVB
MATRIX PROTEIN
SUBACUTE SCLEROSING
283-309
314-338

PANENCEPHALITIS VIRUS

(STRAIN BIKEN)

PVMAT_SV41
MATRIX PROTEIN
SIMINA VIRUS 41
132-154
189-205
308-328

PVMAT_SV5
MATRIX PROTEIN
SIMIAN VIRUS 5 (STRIAN W3)
98-114
132-148
308-335

PVMAT_SVCV
MATRIX PROTEIN
SPRING VIREMIA OF CARP VIRUS
141-167

(RHABDOVIRUS CARPIA)

PVMAT_TRTV
MATRIX PROTEIN
TURKEY RHINOTRACHEITIS
122-143

VIRUS

PVME1_CVBM
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS
9-36
137-161
171-190

(STRAIN MEBUS)

PVME1_CVH22
E1 GLYCOPROTEIN
HUMAN CORONAVIRUS
136-155

(STRAIN 229E)

PVME1_CVHOC
E1 GLYCOPROTEIN
HUMAN CORONAVIRUS
9-36
64-85
137-161

(STRAIN OC43)

PVME1_CVMA5
E1 GLYCOPROTEIN
MURINE COROANVIRUS MHV
10-37

(STRAIN A59)

PVEM1-CVMJH
E1 GLYCOPROTEIN
MURINE COROANVIRUS MHV
10-37

(STRAIN JHM)

PVME1_CVPFS
E1 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
174-193

PRECURSOR
GASTROENTERITIS CORONA-

VIRUS (STRAIN

PVME1_CVPPU
E1 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
169-193
174-193

PRECURSOR
GASTROENTERITIS CORONA-

VIRUS (STRAIN

PVME1_CVPRM
E1 GLYCOPROTEIN
PORCINE RESPIRATORY
174-193

PRECURSOR
CORONAVIRUS (STRAIN RM4)

PVME1_CVTKE
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS
9-36
137-161
171-190

PVME1_IBV6
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
74-98

VIRUS (STRAIN 6/82)

PVME1_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
74-101

VIRUS (STRAIN BEAUDETTE)

PVME1_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
74-101

VIRUS (STRAIN BEAUDETTE M42)

PVME1_IBVK
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
74-98

VIRUS (STRAIN KB8523)

PVMEM_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS
131-157
178-203

PROTEIN
(STRAIN B95-8)

PVMP_CAMVC
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201

(STRAIN CM-1841)

PVMP_CAMVD
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201

(STRAIN D/H)

PVMP_CAMVE
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201

(STRAIN BBC)

PVMP_CAMVN
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201

(STRAIN NY8153)

PVMP_CAMV5
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201

(STRAIN STRASBOURG)

PVMP_CAMVW
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201

STRAIN W260)

PVMP_CERV
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS
293-318

PVMP_FMVD
MOVEMENT PROTEIN
FIGWORT MOSAIC VIRUS
115-131
180-198

(STRAIN DXS)

PVMP_SOCMV
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE
122-147
273-299

VIRUS

PVMSA_HPBDB
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS
201-228
269-295

PRECURSOR
(BROWN SHANGHAI DUCK

ISOLATE S5)

PVMSA_HPBDC
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS
194-221
268-294

PRECURSOR
(STRAIN CHINA)

PVMSA_HPBDU
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS
157-184
231-257

PRECURSOR

PVMSA_HPBDW
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS
194-221
269-295

PRECURSOR
(WHITE SHANGHAI DUCK

ISOLATE S31)

PVMSA_HPBGS
MAJOR SURFACE ANTIGEN
GROUND SQUIRREL HEPATITIS
209-236
271-295
380-395

PRECURSOR
VIRUS

PVMSA_HPBHE
MAJOR SURFACE ANTIGEN
HERON HEPATITIS B VIRUS
236-262
293-320

PRECURSOR

PVMSA_HPBV0
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
11-28
70-96

PVMSA_HPBV2
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
185-202
244-270

PRECURSOR

PVMSA_HPBV9
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
244-270

PRECURSOR
(SUBTYPE ADW/STRAIN 991)

PVMSA_HPBVA
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259

PRECURSOR
(STRAIN ALPHA)

PVMSA_HPBVD
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
11-28
70-96

(SUBTYPE AD)

PVMSA_HPBV1
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
233-259

PRECURSOR
(SUBTYPE ADW/STRAIN

INDONESIA/PIDW420)

PVMSA_HPBVJ
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259

PRECURSOR
(SUBTYPE ADW/STRAIN

JAPAN/PJDW233)

PVMSA_HPBVL
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259

PRECURSOR
(STRAIN LSH/CHIMPANZEE

ISOLATE

PVMSA_HPBVN
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
11-28
70-96

(SUBTYPE ADR/STRAIN NC-1)

PVMSA_HPBVO
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259

PRECURSOR
(SUBTYPE ADW/STRAIN IKINAWA

PODW282)

PVMSA_HPBVP
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
185-202
244-270

PRECURSOR
(SUBTYPE ADW/STRAIN

PHILIPPINO/PFD2294)

PVMSA_HPBVR
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
185-202
244-270

PRECURSOR
(SUBTYPE ADR)

PVMSA_HPBVS
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
11-28
70-96

(SUBTYPE AR)

PVMSA_HPBVW
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259

PRECURSOR
(SUBTYPE ADW)

PVMSA_HPBVY
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259

PRECURSOR
(SUBTYPE ADW)

PVMSA_WHV1
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 1
207-234
269-293
378-393

PRECURSOR

PVMSA_WHV59
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS
212-239
274-298
383-398

PRECURSOR
VIRUS 59

PVMSA_WHV7
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 7
212-239
274-398
383-398

PRECURSOR

PVMSA_WHV8
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
212-239
274-298
383-398

PRECURSOR

PVMSA_WHV81
PROB MAJOR SURFACE
WOODCHUCK HEPATITIS VIRUS 8
212-239
274-298
383-398

ANTIGEN PREC
(INFECTIOUS CLONE)

PVMSA_WHVW6
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS
125-149
234-249

PRECURSOR
W64 (ISOLATE PWS23)

PVMT2_IAANN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/ANN ARBOR/6/60)

PVMT2_IABAN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/BANGKOK/1/79)

PVMT2_IAFOW
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/FORT WARREN/1/50)

PVMT2_IAFPR
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/FOWL PLAGUE VIRUS/

ROSTOCK/34)

PVMT2_IAFPW
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/FOWL PLAGUE VIRUS/

WEYBRIDE)

PVMT2_IALE1
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/LENINGRAD/134/57)

PVMT2_IALE2
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/LENINGRAD/134/17/57)

PVMT2_IAMAN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/MALLARD/NEW

YORK/6750/78)

PVMT2_IAPUE
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/PUERTO RICO/8/34)

PVMT2_IASIN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/SINGAPORE/1/57)

PVMT2_IAUDO
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/UDORN/307/72)

PVMT2_IAWIL
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46

(STRAIN A/WILSON-SMITH/33)

PVMT9_MYXVL
MT-9 PROTEIN
MYXOMA VIRUS (STRAIN
226-241

LAUSANNE)

PVN34_ROTBS
NONSTRUCTURAL
BOVINE ROTAVIRUS (GROUP C/
334-351

PROTEIN NS34
STRAIN SHINTOKU)

PVNBP_PVSP
10 7 KD PROTEIN
POTATO VIRUS (STRIAN
21-36

PERUVIAN)

PVNB_INBBE
NB GLYCOPROTEIN
INFLUENZA B VIRUS
13-39

(STRAIN B/BEIJING/1/87)

PVNB_INBHK
NB GLYCOPROTEIN
INFLUENZA B VIRUS
13-39

(STRAIN B/HONK KONG/8/73)

PVNS1_IAMAN
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192

NS1
(STRAIN A/MALLARD/NEW

YORK/6750/78)

PVNS1_IAMAO
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192

NS1
(STRAIN A/MALLARD/NEW

YORK/6874/78)

PNVS1_IAMUN
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
28-47
164-189

NS1
(STRAIN A/MYNAH/HANEDA-

THAI/76)

PVNS1_IAP10
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
167-192

NS1
(STRAIN A/PINTAIL/ALBERTA/

119/79)

PVNS1_IAPI1
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192

NS1
(STRAIN A/PINTAIL/ALBERTA/

121/79)

PVNS1_IAPI2
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192

NS1
(STRAIN A/PINTAIL/ALBERTA/

268/78)

PVNS1_IAPI3
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192

NS1
(STRAIN A/PINTAIL/ALBERTA/

358/79)

PVNS1_IAPUE
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
114-137
167-192

NS1
(STRAIN A/PUERTO RICO/8/34)

PVNS1_IATKB
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192

NS1
(STRAIN A/TURKEY/BETHLEHEM-

GLILIT/1492-B

PVNS1_IATKC
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192

NS1
(STRAIN A/TURKEY/CANADA/63)

PVNS1_IATKR
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50

NS1
(STRAIN A/TURKEY/OREGON/71)

PVNS1_IATRS
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
28-47
164-189

NS1
(STRAIN A/TERN/SOUTH

AFRICA/61)

PVNS1_IATRT
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192

NS1
(STRAIN A/TERN/TURKMENIA/

18/72)

PVNS1_IAUDO
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
114-137
167-192

NS1
(STRAIN A/UDORN/307/72)

PVNS1_IAUSS
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
114-137
167-192

NS1
(STRAIN A/USSR/90/77)

PVNS1_IAZI1
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192

NS1
(STRAIN A/SWINE/IOWA/15/30)

PVNS1_INCAA
NONSTRUCTURAL PROTEIN
INFLUENZA C VIRUS
222-248

NS1

PVNS1_INCCA
NONSTRUCTURAL PROTEIN
INFLUENZA C VIRUS
222-248

NS1

PVNS2_BTV10
NONSTRUCTURAL PROTEIN
BLUETONGUE VIRUS (SEROTYPE
145-161
201-223

NS2
10/ISOLATE USA)

PVNS2_BTV17
NONSTRUCTURAL PROTEIN
BLUETONGUE VIRUS (SEROTYPE
145-161
201-223

NS2
17/ISOLATE USA)

PVNS2_BTV1S
NONSTRUCTURAL PROTEIN
BLUETONGUE VIRUS (SEROTYPE
145-161

NS2
1/ISOLATE SOUTH AFRICA)

PVNS2_BTV1X
NONSTRUCTURAL PROTEIN
BLUETONGUE VIRUS (SEROTYPE
145-161

NS2
10)

PVNS2_EHDV2
NONSTRUCTURAL PROTEIN
EPIZOOTIC HEMORRHAGIC
145-161

NS2
DISEASE VIRUS (SEROTYPE 2/

STRAIN AL

PVNS2_IAPUE
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
3-28

NS2
(STRAIN A/PUERTO RICO/8/34)

PVNS2_IATRS
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
56-80

NS2
(STRAIN A/TERN/SOUTH

AFRICA/61)

PVNS2_PVM
NONSTRUCTURAL PROTEIN 2
PNEUMONIA VIRUS OF MICE
52-68

PVNS3_CVPFS
NONSTRUCTURAL PROTEIN
PORCINE TRANSMISSIBLE
177-201

3-1
GASTROENTERITIS CORONA-

VIRUS (STRAIN

PVNS3_CVPPU
NONSTRUCTURAL PROTEIN
PORCINE TRANSMISSIBLE
98-122

3-1
GASTROENTERITIS CORONAVIRUS

(STRAIN

PVNS3_CVPRM
NONSTRUCTURAL PROTEIN
PORCINE RESPIRATORY
177-201

3-1
CORONAVIRUS (STRAIN RM4)

PVNS3_RSV
NONSTRUCTURAL PROTEIN
RICE STRIPE VIRUS
16-40

NS3

PVNS4_CVH22
NONSTRUCTURAL PROTEIN 4
HUMAN CORONAVIRUS
84-100

(STRAIN 229E)

PVNS4_CVMS
NONSTRUCTURAL PROTEIN 4
MURINE CORONAVIRUS MHV
17-38

(STRAIN S)

PVNS4_CVPFS
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE
4-31

GASTROENTERITIS CORNOA-

VIRUS (STRAIN

PVNS4_CVPPU
NONSTRUCTURAL PROTEIN 4
PROCINE TRANSMISSIBLE
4-31

GASTROENTERITIS CORNOA-

VIRUS (STRAIN

PVNS4_CVPRM
NONSTRUCTURAL PROTEIN 4
PORCINE REPSIRATORY
4-31

CORONAVIRUS (STRAIN RM4)

PVNS4_MSTV
NONSTRUCTURAL PROTEIN
MAIZE STRIPE VIRUS
41-56

NS4

PVNS4_RSV
NONSTRUCTURAL PROTEIN
RICE STRIPE VIRUS
41-56
60-82
152-167

NS4

PVNS7_CVFE3
NONSTRUCTURAL PROTEIN 7
FELINE ENTERIC CORONAVIRUS
59-84

(STRAIN 79-1683)

PVNS7_FIPV
NONSTRUCTURAL PROTEIN 7
FELINE INFECTIOUS PERITONITIS
59-84

VIRUS (STRAIN 79-1146)

PVNSC_PI1HB
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
76-92

(STRAIN C35)

PVNSC_PI1HC
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
76-92

(STRAIN C39)

PVNSC_PI1HD
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
76-92
179-197

(STRAIN CI-5/73)

PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
76-92

(STRAIN CI-14/83)

PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/BUDGERIGAR/HOKKAIDO/1/77)

PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/CALIFORNIA/10/78)

PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/CHICKEN/GERMANY/N/49)

PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/CHICKEN/PENNSYLVANIA/1/83)

PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/AUSTRALIA/749/80

PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/BEIJING/1/78)

PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/CZECHOSLOVAKIA/56)

PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/ENGLAND/1/56)

PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/ENGLAND/1/62)

PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/HONG KONG/7/75)

PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/MEMPHIS/928/74)

PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/MANITOBA/1/53)

PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/NEW ZEALAND/31/76)

PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/DUCK/UKRAINE/2/60)

PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/ENGLAND/19/55)

PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/FORT WARREN/1/50)

PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/FOWL PLAGUE VIRUS/

DOBSON/DUTC

PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/FOWL PLAGUE VIRUS/

ROSTOCK/34)

PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/GREY TEAL/AUSTRALIA/2/79)

PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/GULL/MARYLAND/5/77)

PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/GULL/MARYLAND/704/77)

PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/GULL/MARYLAND/1824/78)

PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/GULL/MARYLAND/1815/79)

PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/GULL/ASTRAKHAN/227/84)

PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/GULL/MASSACHUSETTS/26/80)

PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/GULL/MINNESOTA/945/80)

PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/HICKOX/40)

PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/EQUINE/JILLIN/1/89)

PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/EQUINE/LONDON/1416/73)

PVNUC_IAHMI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/EQUINE/MIAMI/1/63)

PVNUC_IAHOI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/HONG KONG/1/68)

PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/HONG KONG/5/83)

PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/EQUINE/PRAGUE/1/56)

PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/EQUINE/TENNESSEE/5/86)

PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/KEIV/59/79)

PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/LENINGRAD/54/1)

PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/MALLARD/ASTRAKHAN/244/82)

PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/MALLARD/NEW YORK/6750/78)

PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/MINK/SWEDEN/84)

PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/NT/60/68)

PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/OHIO/4/83)

PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/PARROT/ULSTER/73)

PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/PUERTO RICO/8/34)

PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/RUDDY TURNSTONE/NEW

JERSEY/47/

PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/SEAL/MASSCHUSETTES/1/80)

PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/SHEARWATER/AUSTRALIA/72)

PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/SINGAPORE/1/57)

PVNUC_IATE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/TEAL/ICELAND/29/80)

PVNCU_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/TURKEY/MINNESOTA/1661/81)

PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/TURKEY/ONTARIO/7732/66)

PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/TERN/SOUTH AFRICA/61)

PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/TERN/TURKEYMENAI/18/72)

PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/TEXAS/1/77)

PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/UDORN/307/72)

PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/USSR/90/77)

PVNUC_IAVIS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197

A/VICTORIA/5/68)

PVP23_VZVD
PROBABLE CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS
117-132

VP23
(STRAIN DUMAS)

PVP26_NPVAC
P26 PROTEIN
AUTOGRAPHA CALIFORNICA
12-31
58-76
117-141

NUCLEAR POLYHEDROSIS VIRUS

PVP2_AHSV4
OUTER CAPSID PROTIEN
AFRICAN HORSE SICKNESS VIRUS
868-891
974-994

VP2
(SEROTYPE 4/STRAIN VACCINE)

PVP2_BTV10
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
361-381
399-424
564-586
829-849

VP2
10/ISOLATE USA

PVP2_BTV11
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
361-381
399-424
829-849

VP2
11/ISOLATE USA)

PVP2_BTV13
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
362-382
420-438
617-642
657-676

VP2
13/ISOLATE USA)

PVP2_BTV17
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
361-381

VP2
17/ISOLATE USA)

PVP2_BTV1A
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
420-438
654-681

VP2
1/ISOLATE AUSTRALIA

PVP2_BTV1S
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
14-31
117-140
420-438
654-681

VP2
1/ISOLATE SOUTH AFRICA)

PVP2_EHDV1
OUTER CAPSID PROTEIN
EPIZOOTIC HEMORRHAGIC
153-168
229-252

VP2
DISEASE VIRUS (SEROTYPE 1)

PVP2_ROTBR
RNA-BINDING PROTEIN
BOVINE ROTAVIRUS (STRAIN RF)
301-317
334-360
522-543
673-699
764-789

VP2

PVP2_ROTBU
RNA-BINDING PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
301-317
334-360
523-544
765-790

VP2

PVP2_ROTHW
RNA-BINDING PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
309-325
432-363
532-553
674-700
774-799

VP2
1/STRAIN WA)

PVP2_ROTPC
RNA-BINDING PROTEIN
PORCINE ROTAVIRUS (GROUP C/
51-75
303-319
408-425
514-535
665-691

VP2
STRAIN COWDEN)

PVP2_ROTS1
RNA-BINDING PROTEIN
SIMIAN 11 ROTAVIRUS
34-57
219-240
302-318
335-360
523-544
674-700
765-790

VP2
(STRAIN SA11)

PVP30_MABVP
MINOR NUCLEOPROTEIN
MARBURG VIRUS (STRAIN
50-75

VP30
MUSOKE)

PVP32_ASFB7
PHOSPHOPROTEIN P32
AFRICAN SWINE FEVER VIRUS
174-197

(STRAIN BA71V)

PVP35_EBOV
POLYMERASE COMPLEX
EBOLA VIRUS
233-256

PROTEIN VP35

PVP35_MAMVM
POLYMERASE COMPLEX
MARBURG VIRUS (STRAIN
49-75
78-104

PROTEIN VP35
MUSOKE)

PVP35_MABVP
POLYMERASE COMPLEX
MARBURG VIRUS (STRAIN
49-75
78-104

VP35
POPP)

PVP35_VACCC
IMMUNODOMINANT
VACCINIA VIRUS (STRAIN
278-304

ENVELOPE PROTEIN P35
COPENHAGEN)

PVP35_VACCV
IMMUNODOMINANT
VACCINIA VIRUS (STRAIN WR)
278-304

ENVELOPE PROTEIN P35

PVP35_VARV
IMMUNODOMINANT
VARIOLA VIRUS
279-305

ENVELOPE PROTEIN P35

PVP38_HSVMG
38 KD PHOSPHOPROTEIN
MAREK'S DISEASE HERPESVIRUS
255-270

(STRAIN GA)

PVP38_HSVMN
38 KD PHOSPHOPROTEIN
MAREK'S DISEASE HERPESVIRUS
255-270

(STRAIN MD11/75C/R2)

PVP39_NPVAC
MAJOR CAPSID PROTEIN
AUTOGRAPHA CALIFORNICA
296-311

NUCLEAR POLYHEDROSIS VIRUS

PVP39_NPVOP
MAJOR CAPSID PROTEIN
ORGYIA PSEUDOTSUGATA
107-134
214-240
295-316

MULTICAPSID POLYHEDROSIS

VIRUS

PVP3_ASHV4
VP3 CORE PROTEIN
AFRICAN HORSE SICKNESS VIRUS
65-85
126-147
215-230
845-862

(SEROTYPE 4/STRAIN VACCINE)

PVP3_BTV10
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
123-144
212-227

10/ISOLATE USA)

PVP3_BTV17
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
123-144
212-227

17/ISOLATTE USA)

PVP3_BTV14
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
123-144
212-227

1/ISOLATE AUSTRALIA)

PVP3_EHDV1
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC
121-142
671-695

DISEASE VIRUS (SEROTYPE 1)

PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC
121-142
671-695

DISEASE VIRUS (SEROTYPE

2/STRAIN AUS

PVP3_EDV
MAJOR 114 KD STRUCTURAL
RICE DWARF VIRUS (RDV)
89-108
340-360
367-393
690-717
742-768
748-768
960-975

PROTEIN

PVP3_ROTPC
INNER CORE PROTEIN
PORCINE ROTAVIRUS (GROUP C/
405-429

VP3
STRAIN COWDEN)

PVP3_ROTS1
INNER CORE PROTEIN
SIMIAN 11 ROTATVIRUS
401-425
426-444
512-536
796-822

VP3
(STRAIN SA11)

PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS
429-454

(STRAIN B95-8)

PVP40_HSV11
CAPSID PROTEIN P40
HERPES SIMPLEX VIRUS
141-168
472-492

(TYPE 1/STRAIN 17)

PVP40_HSVEB
CAPSID PROTEIN P40
EQUINE HERPESVIRUS TYPE 1
50-67
95-119
483-504

(STRAIN AB4P)

PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI
342-368

(STRAIN 11)

PVP40_ILTVT
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEI-
506-528

TIS VIRUS (STRAIN THRONE V882)

PVP40_MAMVM
MATRIX PROTEIN VP40
MARBURG VIRUS (STRAIN
95-110

MUSOKE)

PVP40_MABVP
MATRIX PROTEIN VP40
MARBURB VIRUS (STRAIN
95-110

VP40
POPP)

PVP40_NPVBM
STRUCTURAL
BOMBYX MORI NUCLEAR
223-242
256-272

GLYCOPROTEIN P40
POLYHEDROSIS VIRUS

PVP40_VZVD
CAPSID PROTEIN VP24
VARICELLA-ZOSTER VIRUS
47-64

(STRAIN DUMAS)

PVP41_NPVAC
STRUCTURAL
AUTOGRAPHA CALIFORNICA
229-248
262-278

GLYCOPROTEIN GP41
NUCLEAR POLYHEDROSIS VIRUS

PVP41_ROTS1
OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS
483-508

VP4
(STRAIN SA11)

PVP42_ROTS1
OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS
395-411
483-508

VP4
(STRAIN SA11)

PVP47_NPVAC
VIRAL TRANSCRIPTION
AUTOGRAPHA CALIFORNICA
14-38

REGULATOR P47
NUCLEAR POLYHEDROSIS VIRUS

PVP48_NPVOP
P48 PROTEIN
ORGYIA PSEUDOSUGATA
136-157

MULTICAPSID POLYHEDROSIS

VIRUS

PVP4A_VARV
MAJOR CORE PROTEIN
VARIOLA VIRUS
273-288

PRA PRECURSOR

PVP4B_VACCC
MAJOR CORE PROTEIN
VACCINIA VIRUS (STRAIN
331-358

PRA PRECURSOR
COPENHAGEN)

PVP4B_VACCV
MAJOR CORE PROTEIN
VACCINIA VIRUS (STRAIN WR)
331-358

PRA PRECURSOR

PVP4B_VARV
MAJOR CORE PROTEIN
VARIOLA VIRUS
331-358

PRA PRECURSOR

PVP4_BTV10
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
174-191
233-249
545-561

10/ISOLATE USA)

PVP4_BTV11
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
174-191
233-249
535-551

11/ISOLATE USA)

PVP4_BTV13
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
174-191
233-249
535-551

13/ISOLATE USA)

PVP4_BTV2A
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
174-193
233-249
535-551

2/ISOLATE USA)

PVP4_NCDV
OUTER CAPSID PROTEIN
NEBRASKA CALF DIARRHEA
483-508

VP4
VIRUS (STRAIN NCDV-LINCOLN)

PVP4_RDV
NONSTRUCTURAL PROTEIN
RICE DWARF VIRUS
386-407
493-514
626-645

PNS4

PVP4_ROTB4
OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (SEROTYPE
483-508

VP4
6/STRAIN B64)

PVP4_ROTBC
OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN
483-508

VP4
C486)

PVP4_ROTBU
OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
483-508

VP4

PVP4_ROTEH
OUTER CAPSID PROTEIN
EQUINE ROTAVIRUS (STRAIN
226-250
483-508

VP4
H-2)

PVP4_ROTH1
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE/
181-207
234-249
482-507

VP4
1/STRAIN 1076)

PVP4_ROTH5
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE/
181-207
234-249
482-507

VP4
2/STRAIN RV-5)

PVP4_ROTH6
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
483-508

VP4
1/STRAIN 69M)

PVP4_ROTHD
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
234-249
482-507

VP4
2/STRAIN DS1)

PVP4_ROTHJ
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (STRAIN K8)
483-508
524-548

VP4

PVP4_ROTHK
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (STRAIN KU)
76-91
181-207
234-249
482-507

VP4

PVP4_ROTHL
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (STRAIN L26)
181-207
234-249
482-507

VP4

PVP4_ROTHM
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
234-249
482-507

VP4
1/STRAIN M37)

PVP4_ROTHN
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE/
181-208
235-250
483-508

VP4
3/STRAIN MCN13)

PVP4_ROTHP
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
234-249
482-507

VP4
3/STRAIN P)

PVP4_ROTHT
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
234-249
482-507

VP4
4/STRAIN ST THOMAS)

PVP4_ROTHV
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
482-507

VP4
4/STRAIN VA70)

PVP4_ROTHW
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
482-507

VP4
1/STRAIN WA)

PVP4_ROTP5
OUTER CAPSID PROTEIN
PORCINE ROTAVIRUS (SEROTYPE
235-250
483-508

VP4
5/STRAIN OSU)

PVP4_ROTPC
OUTER CAPSID PROTEIN
PORCINE ROTAVIRUS (GROUP
487-512

VP4
C/STRAIN COWDEN)

PVP4_ROTPG
OUTER CAPSID PROTEIN
PORCINE ROTAVIRUS (SEROTYPE
234-249
482-507

VP4
GOTTFRIED)

PVP4_ROTPY
OUTER CAPSID PROTEIN
PORCINE ROTAVIRUS
235-250
483-508

VP4
(SEROTYPE YM)

PVP4_ROTRH
OUTER CAPSID PROTEIN
RHESUS VIRUS
483-508

VP4

PVP4_ROTSF
OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN
483-508

VP4
SA11-FEM)

PVP4_ROTSS
OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN
395-411
483-508

VP4
SA11-SEM)

PVP4_SBMV
P4 PROTEIN
SOUTHERN BEAN MOSAIC VIRUS
90-114

PVP4_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
192-215
416-438
498-519
564-591

PNS4

PVP5_BTV10
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317
326-345
494-517

VP5
10/ISOLATE USA)

PVP5_BTV11
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317
326-345
494-517

VP5
11/ISOLATE USA)

PVP5_BTV13
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317
494-517

VP5
13/ISOLATE USA)

PVP5_BTV1A
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
87-102
295-317

VP5
1/ISOLATE AUSTRALIA)

PVP5_BTV1S
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317

VP5
1/ISOLATE SOUTH AFRICA)

PVP5_BTV2A
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317

VP5
2/ISOLATE USA)

PVP5_RDV
OUTER COAT PROTEIN P5
RICE DWARF VIRUS
265-284
622-639
690-715

PVP61_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
9-27
232-249
261-276

10/ISOLATE USA)

PVP61_NPVAC
61 KD PROTEIN
AUTOGRAPHA CALIFORNICA
321-337
438-462

NUCLEAR POLYHEDROSIS VIRUS

PVP62_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
5-23
257-372

10/ISOLATE USA)

PVP62_MRDV
PROB NONSTRUCTURAL
MAIZE ROUGH DWARF VIRUS
130-146

36 3 KD PROTEIN

PVP64_NPVOP
MAJOR ENV
ORGYIA PSEUDOTSUGATA
81-99
235-252
286-313

GLYCOPROTEIN PREC
MULTICAPSID POLYHEDROSIS

VIRUS

PVP67_NPVAC
MAJOR ENV
AUTOGRAPHA CALIFORNICA
84-102
238-255

GLYCOPROTEIN PREC
NULCEAR POLYHDEDROSIS VIRUS

PVP67_MPVGM
MAJOR ENVELOPE
GALLERIA MELLONELLA
155-172

GLYCOPROTEIN
NUCLEAR POLYHEDROSIS VIRUS

PVP6_BTV11
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
5-23
228-245
257-272

11/ISOLATE USA)

PVP6_BTV13
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
5-23
228-245
257-272

13/ISOLATE USA)

PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
5-23
228-245
257-272

17/ISOLATE USA)

PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
9-27
232-249
261-276

1/ISOLATE SOUTH AFRICA)

PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
204-221
233-248

2/ISOLATE USA)

PVP6_WTV
STURCTURAL PROTEIN P6
WOUND TUMOR VIRUS
374-397

PVP6_WTVNJ
STURCTURAL PROTEIN P6
WOUND TUMOR VIRUS
374-397

PVP74_NPVAC
P74 PROTEIN
AUTOGRAPHA CALIFORNICA
254-275

NUCLEAR POLYHEDROSIS VIRUS

PVP75_HSVSA
PROBABLE MEMBRANE
HERPESVIRUS SAIMIRI
127-147

ANTIGEN 75
(STRAIN 11)

PVP79_NPVAC
79 KD PROTEIN
AUTOGRAPHA CALIFORNICA
274-301
405-420
678-704

NUCLEAR POLYHEDROSIS VIRUS

PVP7_BTV13
VP7 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
197-222

13/ISOLATE USA)

PVP7_EHDV1
VP7 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC
205-222
301-323

DISEASE VIRUS (SEROTYPE 1)

PVP7_RDV
NONSTRUCTURAL PROTEIN
RICE DWARF VIRUS
400-416

PNS7

PVP7_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
262-285

PNS7

PVS05_ROTH1
NONSTRUCTURAL PROTEIN
HUMAN ROTAVIRUS (STRAIN
140-157
428-450
457-473

NCVP2
IGV-80-3)

PVS05_ROTPC
NONSTRUCTURAL PROTEIN
PORCINE ROTAVIRUS (GROUP
88-112

NS53
C/STRAIN COWDEN)

PVS05_ROTS1
NONSTRUCTURAL PROTEIN
SIMINA 11 ROTAVIRUS
399-414

NCVP2
SA11)

PVS06_ROTBR
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN RF)
202-225

PVS06_ROTBS
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/
64-85

STRAIN SHINTOKU)

PVS06_ROTBU
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
202-225

PVS06_ROTEF
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN
202-225

F1-14)

PVS06_ROTE11
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN
202-225

H-2)

PVS06_ROTGA
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN
22-40

ADRV) (ADULT DIARRHEA

ROTAVIRUS)

PVS06_ROTG1
VP6 PROTEIN
ROTAVIRUS (GROUP B/
22-40

STRAIN IDIR)

PVS06_ROTH1
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
202-225

1/STRAIN 1076)

PVS06_ROTHC
VP6 PROTEIN
HUMAN ROTAVIRUS (GROUP C/
64-85

STRAIN BRISTOL)

PVS06_ROTHS
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
202-225

2/STRAIN S2)

PVS06_ROTHW
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
202-225

1/STRAIN WA)

PVS06_ROTPC
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/
64-85
314-340

STRAIN COWDEN)

PVS06_ROTPG
VP6 PROTEIN
PORCINE ROTAVIRUS (STRAIN
202-225

GOTTFRIED)

PVS07_ROTBJ
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN
131-155

KN-4)

PVS08_RPTPC
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (GROUP C/
117-136

STRAIN COWDEN)

PVS08_ROTS1
NONSTRUCTURAL PROTEIN
SIMINA 11 ROTAVIRUS
274-295

NCVP4
(STRAIN SA11)

PVS09_ROTB6
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE
131-155

6/STRAIN 61A)

PVS09_ROTBA
GLYCOPROTEIN VP7
BOVINE ROATVIRUS (STRAIN
131-155

A44)

PVS09_ROTBK
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN
131-155

KK3)

PVS09_ROTBT
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE
131-155

1/STRAIN T449)

PVS09_ROTC7
GLYCOPROTEIN VP7
CHICKEN ROTAVIRIUS A
134-158

(SEROTYPE 7/STRAIN CH2)

VPS09_ROTEL
GLYCOPROTEIN VP7
EQUINE ROTATVIRUS (STRAIN
131-155

L338)

PVS09_ROTG1
GLYCOPROTEIN VP7
ROTAVIRUS (GROUP B/
205-232

PRECURSOR
IDIR)

PVS09_ROTH4
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155
197-212

4/STRAIN RV-4)

PVS09_ROTHA
GLYCOPROTEIN VP7 (
HUMAN ROTAVIRUS (SEROTYPE
197-212

2/STRAIN HU5)

PVS09_ROTHDa
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
197-212

2/STRAIN DS1)

PVS09_TOTH1
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
197-212

2/STRAIN HN126)

PVS09_ROTHL
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (STRAIN L26)
131-155
197-212

PVS09_ROTHM
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155
197-212

1/STRAIN M37)

PVS09_ROTHO
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155
197-212

1/STRAIN MO AND STRAIN D)

PVS09_ROTHP
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SERPTYPE
131-155

3/STRAIN P)

PVS09_ROTH4
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155

3/STRAIN RRV)

PVS09_ROTHV
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
197-212

4/STRAIN VA70)

PVS09_ROTHW
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155
197-212

1/STRAIN WA)

PVS09_ROTPS
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE
131-155
197-212

5/STRAIN OSU)

PVS09_ROTP6
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE
131-155

5/STRAIN TFR-41)

PVS09_ROTPB
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE
197-212

4/STRAIN BEN-144)

PVS09_ROTPM
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE
197-212

4/STRAIN BM1-1)

PVS09_ROTRH
GLYCOPROTEIN VP7
RHESUS ROTAVIRUS
131-155

PVS09_ROTS1
GLYCOPROTEIN VP7
SIMIAN 11 ROTAVIRUS
131-155

(STRAIN SA11)

PVS11_ROTGA
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN
136-153

ADRV) (ADULT DIARRHEA

ROTAVIRUS)

PVSH_HRSVA
SMALL HYDROPHOBIC
HUMAN RESPIRATORY
16-41

PROTEIN
SYNCYTIAL VIRUS (STRAIN A2)

PVSH_MUMP1
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN SBL-1),
7-29

PROTEIN
AND MUMPS VIRUS (STRAIN SBL)

PVSH_MUMP2
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
7-29

PROTEIN
EDINGBURGH 2 & 6)

PVSH_MUMP4
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
7-29

PROTEIN
EDINGBURGH 4)

PVSH_MUMPA
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
10-29

PROTEIN
MATSUYAMA)

PVSH_MUMPB
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN BELFAST)
7-29

PROTEIN

PVSH_MUMPE
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN ENDERS)
7-29

PROTEIN

PVSH_MUMPJ
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
7-29

PROTEIN
JERYL-LYNN)

PVSH_MUMPK
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN KILHAM)
7-29

PROTEIN

PVSH_MUMPL
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN BRISTOL L)
6-29

PROTEIN

PVSH_MUMPM
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
10-29

PROTEIN
MIYAHRARA VACCINE)

PY8_SOCMV
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE
10-27

VIRUS

PY97_ADE07
HYPOTHETICAL 9 7 KD
HUMAN ADENOVIRUS TYPE 7
54-77

EARLY PROTEIN

PY9K2_SSV1
HYPOTHETICAL 9 2 KD
SULFOLOBUS VIRUS-LIKE
16-41
62-77

PROTEIN
PARTICLE SSV1

PYAL1-EBV
HYPOTHETICAL BALF1
EPSTEIN-BARR VIRUS
205-220

PROTEIN
(STAIN B95-8)

SMALL HYDROPHOBIC

PROTEIN

PYB09_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRIS (ISOLATE
49-67

ORF9 PROTEIN
HP-438[MUNICH])

PYB10_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRIS (ISOLATE
84-100

ORF9 PROTEIN
HP-438[MUNICH])

PYB12_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRIS (ISOLATE
114-134
154-169

ORF9 PROTEIN
HP-438[MUNICH])

PYBL2-SFV3L
BEL-2 PROTEIN
SIMIAN FOAMY VIRUS
113-128

(TYPE 3/STRAIN LK3)

PYBL3_FOAMV
BEL-3 PROTEIN
HUMAN SPUMARETROVIRUS
52-78

PYDH1_HSVSC
HYP 28 7 KD PROTEIN
HERPESVIRUS SAIMIRIR
206-230

IN DHFR 3'REGION
(SUBGROUP C/STRAIN 488)

PYDH3_HSVSC
HYP 9 5 KD PROTEIN
HERPESVIRUS SAIMIRIR
69-90

IN DHFR 3'REGION
(SUBGROUP C/STRAIN 488)

PYEC4_EBV
HYPOTHETICAL EC-RF4
EPSTEIN-BARR VIRUS
200-222

PROTEIN
(STRAIN B95-8)

PYGA1_HSVMB
HYPOTHETICAL 23 6 KD
MAREK'S DISEADE
175-190

PROTEIN
HERPESVIRUS (STRAIN BC-1)

PYGA1_HSVMM
HYPOTHETICAL 23 6 KD
MAREK'S DISEADE
175-190

PROTEIN
HERPESVIRUS (STRAIN MD5)

PYHL4_HCMVA
HYPOTHETICLA PROTEIN
HUMAN CYTOMEGALOVIRUS
101-121

HHLF4
(STRAIN AD169)

PYHR3_VACCV
HYP HOST RANGE 27 4
VACCINIA VIRUS (STRAIN WR)
86-102

PROTEIN

PYIO2_CMVAS
HYP PROTEIN IN
MURINE CORONAVIRUS MHV
141-156

NUCLEOCAPSID ORF

PYIOR_CVM1
HYP PROTEIN IN
MURINE CORONAVIRUS MHV
141-156

NUCLEOCAPSID ORF

PYIOR_CVMS
HYP PROTEIN IN
MURINE CORONAVIRUS MHV
7-33

NUCLEOCAPSID ORF

PYKR2_EBV
HYPOTHETICAL BKRF2
EPSTEIN-BARR VIRUS
67-90

PROTEIN
(STRAIN B95-8)

PYL12_ADE41
HYPOTHETICAL 8 0 KD
HUMAN ADENOVIRUS TYPE 41
53-73

PROTEIN

PYOR1_TTV1
HYPOTHETICAL 7 9 KD
THERMOPROTEUS TENXA VIRUS
13-40

PROTEIN
1 (STRAIN KRA1)

PYOR2_COYMV
HYPOTHETICAL 15 KD
COMMELINA YELLOW MOTTLE
23-49

PROTEIN
VIRUS

PYOR2_EAV
HYPOTHETICAL 25 6 KD
EQUINE ARTERITIS VIRUS
165-192

PROTEIN

PYOR2_LELV
HYPOTHETICAL 28 4 KD
LELYSTAD VIRUS
196-212

PROTEIN

PYOR3_LVX
HYPOTHETICAL 11 8 KD
LILY VIRUX X
71-92

PROTEIN

PYOR3_NMV
HYPOTHETICAL 14 KD
NARCISSUS MOSAIC VIRUS
7-30

PROTEIN

PYOR3_PVX
HYPOTHETICAL 12 KD
POTATO VIRUS X
11-34

PROTEIN

PYOR3_PVXCP
HYPOTHETICAL 12 KD
POTATO VIRUS X (STRAIN CP)
11-34

PROTEIN

PYOR3_WCMVM
HYPOTHETICAL 13 KD
WHITE CLOVER MOSAIC VIRUS
9-29

PROTEIN
(STRAIN M)

PYOR3_WCMVO
HYPOTHETICAL 13 KD
WHITE CLOVER MOSAIC VIRUS
9-31

PROTEIN

PY0R5_ADEG1
HYPOTHETICAL 31 5 KD
AVIAN ADENOVIRUS GAL1
69-86

PROTEIN
(STRAIN PHELPS) (FOWL AND

ADEOVIRUS 1)

PYOR5_EAV
HYPOTHETICAL 28 7 KD
EQUINE ARTERITIS VIRUS
139-158

PROTEIN

PYORP_TTV1
HYPOTHETICAL 20 2 KD
THERMOPROTEUS TEXAX VIRUS
91-115

PROTEIN
(STRAIN KRA1)

PYR24_RTBV
HYPOTHETICAL P24
RICE TUNGRO BACILLIFORM
2-25
104-126

PROTEIN
VIRUS

PYP24_RTBVP
HYPOTHETICAL P24
RICE TUNGRO BACILLIFORM
2-25
104-126

PROTEIN
VIRUS (ISOLATE PHILIPPINES)

PYP47_NPVAC
HYPOTHETICAL 43 5 KD
AUTOGRAPHA CALIFORNICA
211-234

PROTEIN
NUCLEAR POLYHEDROSIS VIRUS

PYP62_NPVOP
HYPOTHETICAL 12 2 KD
ORGYIA PSEUDOSUGATA
82-108

PROTEIN
MULTICAPSID POLYHEDROSIS

VIRUS

PYP63_NPVOP
HYPOTHETICAL 12 2 KD
ORGYIA PSEUDOSUGATA
27-54
215-230

PROTEIN
MULTICAPSID POLYHEDROSIS

VIRUS

PYP7B_TNVD
HYPOTHETICAL P7B
TOBACCO NECROSIS VIRUS
13-31

PROTEIN
(STRAIN D) (TNV)

PYPO4_NPVLD
HYPOTHETICAL 8 5 KD
LYMANTRIA DISPAR MULTI-
16-35

PROTEIN
CAPSID NUCLEAR POLYHEDROSIS

VIRUS

PYRF1_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
42-66

RF1
(TYPE 6/STRAIN GS)

PYRF2_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
55-74

RF2
(TYPE 6/STRAIN GS)

PYRF3_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
32-56

RF3
(TYPE 6/STRAIN GS)

PYRP1_IRV6
REPETITIVE PROTEIN
CHILD IRIDESCENT VIRUS (CIV)
20-43

ORF1
(INSECT IRIDESCENT VIURS

TYPE 6)

PYR41_IRV6
REPETITIVE PROTEIN
CHILD IRIDESCENT VIRUS (CIV)
44-69

ORF4
(INSECT IRIDESCENT VIURS

TYPE 6)

PYRP6_IRV6
REPETITIVE PROTEIN
CHILD IRIDESCENT VIRUS (CIV)
98-123
179-204
260-285

ORF6
(INSECT IRIDESCENT VIURS

TYPE 6)

PYRR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
199-223

PROTEIIN
(STRAIN B95-8)

PYRR2_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
164-182

PROTEIIN
(STRAIN B95-8)

PYsR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
92-113

PROTEIIN
(STRAIN B95-8)

PYtR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
383-401

PROTEIIN
(STRAIN B95-8)

PYUB2_NPVOP
HYPOTHETICAL 24 0 KD
ORGYIA PSEUDOTSUGATA
133-152

PROTEIN
MULTICAPSID POLYHEDROSIS

VIRUS (OP

PYVA3_VACCC
HYPOTHETICAL 8 4 KD
VACCINIA VIRUS (STRAIN
82-99
140-156

PROTEIN
COPENHAGEN)

PYVAF_VACCC
HYPOTHETICAL 8 4 KD
VACCINIA VIRUS (STRAIN
17-40
51-68

PROTEIN
COPENHAGEN)

PYVAL_VACCV
HYPOTHERTICAL 9 9 KD
VACCINIA VIRUS (STRAIN WR),
21-43

PROTEIN
AND VACCINIA VIRUS (STRAIN

COPE

PYVBG_VACCC
HYPOTHETICAL 11 2 KD
VACCINIA VIRUS (STRAIN
37-54

PROTEIN
COPENHAGEN)

PYVCA_VACCC
HYPOTHETICAL 8 0 KD
VACCINIA VIRUS (STRAIN
18-35

COPENHAGEN)

PYVD2_VACCV
HYPOTHETICAL 8 6 KD
VACCINIA VIRUS (STRAIN WR),
5-26
36-52

PROTEIN
AND VACCINIA VIRUS (STRAIN

COPE)

PYVDA_VACCC
HYPOTHETICAL 9 2 KD
VACCINIA VIRUS (STRAIN
22-38
44-64

PROTEIN
COPENHAGEN)

PYVDA_VACCV
HYPOTHETICAL 9 2 KD
VACCINIA VIRUS (STRAIN WR)
3-18
22-38
44-64

PROTEIN

PYVFA_VACCC
HYPOTHETICLA 7 1 KD
VACCINIA VIRUS (STRAIN
48-67

PROTEIN
COPENHAGEN)

PVYFF_VACCC
HYPOTHETICAL 8 8 KD
VACCINIA VIRUS (STRAIN
23-42

PROTEIN
COPENHAGEN)

PYVGA_VACCC
HYPOTHETICAL 14 3 KD
VACCINIA VIRUS (STRAIN
105-127

PROTEIN
COPENHAGEN)

PYVKB_VACCC
HYPOTHETICAL 9 0 KD
VACCINIA VIRUS (STRAIN
54-70

PROTEIN
COPENHAGEN)

PYZL2_EBV
HYPOTHETICAL BZLF2
EPSTEIN-BARR VIRUS
150-166

PROTEIN
(STRAIN B95-8)

PY14K_CMSV
HYPOTHETICAL 14 5 KD
CHLORISIS STRIATE MOSAIC
54//80

PROTEIN
VIRUS

PY18K_SSV1
HYPOTHETICAL 18 0 KD
SULFOLOBUS VIRUS-LIKE
100-125
141-162

PROTEIN
PARTICLE SSV1

PY206_ADE07
HYPOTHETICAL 20 6 KD
HUMAN ADENOVIRUS TYPE 7
50-73

EARLY PROTEIN

PY25K_BNYVF
RNA-3 HYPOTHETICAL 24 7
BEET NECROTIC YELLOW VEIN
163-188

KD PROTEIN
MOSAIC VIRUS (ISOLATE F2)

PY29K_NPVAC
HYPOTHETICAL 29 9 KD
AUTOGRAPHA CALIFORNICA
90-106

PROTEIN
NECROSIS POLYHEDROSIS VIRUS

PY2_SCOMV
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE
65-90

VIRUS

PY32K_SSV1
HYPOTHETICAL 31 7 KD
SULFOLOBUS VIRUS-LIKE
122-142

PROTEIN
PARTICLE SSV1

PY6K0_SSV1
PY32K_SSV1
HYPOTHETICAL 6 0 KD
SULFOLOBUS VIRUS-LIKE
23-44

PROTEIN
PARTICLE SSV1

PY7K4_VACCV
HYPOTHETICAL 7 K KD
VACCINIA VIRUS (STRAIN WR)
21-36

PROTEIN

PY7K_MEASH
HYPOTHETICAL 7 KD
MEASLES VIRUS (STRAIN HALLE)
3-25

PROTEIN

PY7_SOCMV
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE
96-120

VIRUS

PY85K_SSV1
HYPOTHETICAL 85 7 KD
SULFOLOBUS VIRUS-LIKE
80-105
155-173
543-565
657-675
764-784

PROTEIN
PARTICLE SSV1

PY8_SOCMV
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE
10-27

VIRUS

PY97_ADE07
HYPOTHETICAL 9 7 KD
HUMAN ADENOVIRUS TYPE 7
54-77

EARLY PROTEIN

PY9K2_SSV1
HYPOTHETICAL 9 2 KD
SULFOLOBUS VIRUS-LIKE
16-41
62-77

PROTEIN
PARTICLE SSV1

PYAL1_EBV
HYPOTHETICAL BALF1
EPSTEIN-BARR VIRUS
205-220

PROTEIN
(STRAIN B95-8)

PYB01_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
354-374

ORF1 PROTEIN
HP-438[MUNICH])

PYB07_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
104-121

ORF7 PROTEIN
HP-438[MUNICH])

PYB09_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
49-67

ORF9 PROTEIN
HP-438[MUNICH])

PYB010_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
84-100

ORF10 PROTEIN
HP-438[MUNICH])

PYB012_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
114-134
154-169

ORF12 PROTEIN
HP-438[MUNICH])

PYBL2_SFV3L
BEL-2 PROTEIN
SIMIAN FOAMY VIRUS
113-128

(TYPE 3/STRAIN LK3)

PYBL3_FOAMV
BEL-3 PROTEIN
HUMAN SPUMARETOVIRUS
52-78

PYDH1_HSVSC
HYPOTHETICAL 28 7 KD
HERPESVIRUS SAIMIRI
206-230

PROTEIN IN DHFR
(SUBGROUP C/STRAIN 488)

3'REGION

PYDH3_HSVSC
HYPOTHETICAL 9 5 KD
HERPESVIRUS SAIMIRI
69-90

PROTEIN IN DHFR
(SUBGROUP C/STRAIN 488)

3'REGION

PYEC4_EBV
HYPOTHETICAL EC-RF4
EPSTEIN-BARR VIRUS
200-222

PROTEIN
(STRAIN B95-8)

PYGA1_HSVMB
HYPOTHETICAL 23 6 KD
MAREK'S DISEASE
175-190

PROTEIN
HERPESVIRUS (STRAIN BC-1)

PYGA1_HSVMB
HYPOTHETICAL 23 6 KD
MAREK'S DISEASE
175-190

PROTEIN
HERPESVIRUS (STRAIN MID-1)

PYHL4-HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
101-121

HHLF4
(STRAIN AD169)

PYHR3_VACCV
HYPOTHETICAL HOST
VACCINAI VIRUS (STRAIN WR)
86-102

RANGE 27 4 KD PROTEIN

PYIO2_CVMA5
HYPOTHETICAL PROTEIN IN
MURINE CORONAVIRUS MHV
141-156

NUCLEOCAPSID ORF

PYIOR_CVMA5
HYPOTHETICAL PROTEIN IN
MURINE CORONAVIRUS MHV
141-156

NUCLEOCAPSID ORF

PYIOR_CVMA5
HYPOTHETICAL PROTEIN IN
MURINE CORONAVIRUS MHV
7-33

NUCLEOCAPSID ORF

PYKR2_EBV
HYPOTHETICAL BKRF2
EPSTEIN-BARR VIRUS
67-90

PROTEIN
(STRAIN B95-8)

PYUL12_ADE41
HYPOTHETICAL 8 0 KD
HUMAN ADENOVIRUS TYPE 41
53-73

PROTEIN

PYMR2_EBV
BMRF2 PROTEIN
EPSTEIN-BARR VIRUS
76-100
128-155
215-241
330-350

(STRAIN B95-8)

PYMSP_IRV22
HYPOTHETICAL 15 9 KD
SIMULIUM IRIDESCENT VIRUS
23-46

PROTEIN
(INSECT IRIDESCENT VIRUS

TYPE 22)

PYOR1_ADEG1
HYPOTHETICAL PROTEIN
AVIAN ADENOVIRUS GAL1
59-80

(STRAIN PHELPS) (FOWL

ADENOVIRUS 1)

PYOR1_COYMV
HYPOTHETICAL 23 KD
COMMELINA YELLOW MOTTLE
56-83

PROTEIN
VIRUS

PYOR1_TTV1
HYPOTHETICAL 7 9 KD
THERMOPROTEUS TENAX VIRUS
13-40

PROTEIN
1 (STRAIN KRA1)

PYOR2_COYMV
HYPOTHETICAL 15 KD
COMMELINA YELLOW MOTTLE
23-49

PROTEIN
VIRUS

PYOR2_EAV
HYPOTHETICAL 25 6 KD
EQUINE ARTERITIS VIRUS
165-192

PROTEIN

PYOR2_LELV
HYPOTHETICAL 28 4 KD
LELYSTAD VIRUS
196-212

PROTEIN

PYOR3_LVX
HYPOTHETICAL 11 8 KD
LILY VIRUS
71-92

PROTEIN

PYOR3_NMV
HYPOTHETICAL 14 KD
NARCISSUS MOSAIC VIRUS
7-30

PROTEIN

PYOR3_PVX
HYPOTHETICAL 12 KD
POTATO VIRUX X
11-34

PROTEIN

PYOR3_PVXCP
HYPOTHETICAL 12 KD
POTATO VIRUS X (STRAIN CP)
11-34

PROTEIN

PYOR3_WCMVM
HYPOTHETICAL 13 KD
WHITE CLOVER MOSAIC
9-29

PROTEIN
VIRUS

PYOR3_WCMVO
HYPOTHETICAL 13 KD
WHITE CLOVER MOSAIC
9-31

PROTEIN
VIRUS

PYOR5_ADEG1
HYPOTHETICAL 31 5 KD
AVIAN ADENOVIRUS GAL1
69-86

PROTEIN
(STRAIN PHELPS) (FOWL

ADENOVIRUS 1)

PYOR5_EAV
HYPOTHETICAL 28 7 KD
EQUINE ARTERITISA VIRUS
139-158

PROTEIN

PYOR6_NMV
HYPOTHETICAL 10 KD
NARCISSUS MOSAIC VIRUS
10-26

PROTEIN

PYOR1_TTV1
HYPOTHETICAL 16 6 KD
THERMOPROTEUS TENAX VIRUS
13-32

PROTEIN
1 (STRAIN KRA1)

PYOR1_TTV1
HYPOTHETICAL 16 6 KD
THERMOPROTEUS TENAX VIRUS
16-39

PROTEIN
1 (STRAIN KRA1)

PYORM_TTV1
HYPOTHETICAL 38 6 KD
THERMOPROTEUS TENAX VIRUS
82-102
233-256

PROTEIN
1 (STRAIN KRA1)

PYORP_TTV1
HYPOTHETICAL 20 2 KD
THERMOPROTEUS TENAX VIRUS
91-115

PROTEIN
1 (STRAIN KRA1)

PYP24_RTBV
HYPOTHETICAL P24
RICE TUNGRO BASCILLIFORM
2-25
104-126

PROTEIN
VIRUS

PYP24_RTBVP
HYPOTHETICAL P24
RICE TUNGRO BASCILLIFORM
2-25
104-126

PROTEIN
VIRUS (ISOLATE PHILIPPINES)

PYP47_NPVAC
HYPOTHETICAL 43 5 KD
AUTOGRAPHA CALIFORNICA
211-234

PROTEIN IN P47
NUCLEAR POLYHEDROSIS VIRUS

3'REGION

PYP62_NPVOP
HYPOTHETICAL 43 5 KD
ORGYIA PSEUDOTSUGATA
82-108

PROTEIN IN P47
MULTICAPSID POLYHEDROSIS

3'REGION
VIRUS (OP

PYP63_NPVOP
HYPOTHETICAL 43 5 KD
ORGYIA PSEUDOTSUGATA
27-54
215-230

PROTEIN IN P47
MULTICAPSID POLYHEDROSIS

3'REGION
VIRUS (OP

PYP7B_TNVD
HYPOTHETICAL P7B
TOBACCO NECROSIS VIRUS
13-31

PROTEIN
(STRAIN D) (TNV)

PYPO4_HPVLD
HYPOTHETICAL 8 5 KD
LYMANTRIA DISPAR MULTI-
16-35

PROTEIN IN POL
CAPSID NUCLEAR POLYHEDROSIS

3'REGION
VIRUS

PYRF1_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
42-66

RF1
(TYPE 6/STRAIN GS)

PYRF2_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
55-74

RF2
(TYPE 6/STRAIN GS)

PYRF3_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
32-56

RF3
(TYPE 6/STRAIN GS)

PYRP1_IRV6
REPETITIVE PROTEIN
CHILO IRIDESCENT VIRUS
20-43

ORF1
(CIV) (INSECT IRIDESCENT

VIRUS TYPE 6)

PYRP4_IRV6
REPETITIVE PROTEIN
CHILO IRIDESCENT VIRUS
44-69

ORF4
(CIV) (INSECT IRIDESCENT

VIRUS TYPE 6)

PYRP5_IRV6
REPETITIVE PROTEIN
CHILO IRIDESCENT VIRUS
98-123
179-204
260-285

ORF5
(CIV) (INSECT IRIDESCENT

VIRUS TYPE 6)

PYRR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
199-223

PROTEIN
(STRAIN B95-8)

PYRR2_EBV
HYPOTHETICAL BRRF2
EPSTEIN-BARR VIRUS
164-182

PROTEIN
(STRAIN B95-8)

PYRR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
92-113

PROTEIN
(STRAIN B95-8)

PYRR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
383-401

PROTEIN
(STRAIN B95-8)

PYUB2_NPVOP
HYPOTHETICAL 24 0 KD
ORGYIA PSEUDOTSUGATA
133-152

PROTEIN
MULTICAPSID POLYHEDROSIS

VIRUS

PYVAE_VACCC
HHYPOTHETICAL 18 2 KD
VACCINIA VIRUS (STRAIN
82-99
140-156

PROTEIN
COPENHAGEN)

PYVAF_VACCC
HHYPOTHETICAL 8 4 KD
VACCINIA VIRUS (STRAIN
17-40
51-68

PROTEIN
COPENHAGEN)

PYVAL_VACCV
HYPOTHETICAL 9 9 KD
VACCINIA VIRUS (STRAIN WR),
21-43

PROTEIN
AND VACCINIA VIRUS (STRAIN

COPE

PYVAT_VACCV
HYPOTHETICAL 8 9 KD
VACCINIA VIRUS (STRAIN WR),
28-46

PROTEIN
AND VACCINIA VIRUS (STRAIN

COPE

PYVBE_VACCV
HYPOTHETICAL 10 5 KD
VACCINIA VIRUS (STRAIN WR),
9-28

PROTEIN
AND VACCINIA VIRUS (STRAIN

COPE

PYVBG_VACCC
HYPOTHETICAL 11 2 KD
VACCINIA VIRUS (STRAIN
37-54

PROTEIN
COPENHAGEN)

PYVCA_VACCC
HYPOTHETICAL 11 2 KD
VACCINIA VIRUS (STRAIN
18-35

PROTEIN
COPENHAGEN)

PYVD2_VACCV
HYPOTHETICAL 8 6 KD
VACCINIA VIRUS (STRAIN WR),
5-26
36-52

PROTEIN
AND VACCINIA VIRUS (STRAIN

COPE

PYVDA_VACCC
HYPOTHETICAL 9 2 KD
VACCINIA VIRUS (STRAIN
22-38
44-64

PROTEIN
COPENHAGEN)

PYVDA_VACCV
HYPOTHETICAL 9 2 KD
VACCINIA VIRUS (STRAIN WR)
3-18
22-398
44-64

PROTEIN

PYVFA_VACCC
HYPOTHETICAL 7 1 KD
VACCINIA VIRUS (STRAIN
48-67

PROTEIN
COPENHAGEN)

PYVFF_VACCC
HYPOTHETICAL 8 8 KD
VACCINIA VIRUS (STRAIN
23-42

PROTEIN
COPENHAGEN)

PYVGA_VACCC
HYPOTHETICAL 14 3 KD
VACCINIA VIRUS (STRAIN
105-127

PROTEIN
COPENHAGEN)

PYVKB_VACCC
HYPOTHETICAL 9 0 KD
VACCINIA VIRUS (STRAIN
54-70

PROTEIN
COPENHAGEN)

PYZL2_EBV
HYPOTHETICAL BZLF2
EPSTEIN-BARR VIRUS
150-166

PROTEIN
(STRAIN B95-8)

TABLE XIV

SEARCH RESULTS SUMMARY

FOR P23TLZIPC MOTIF

PCGENE
P23CTLZIP
All Viruses (no bacteriophages)

FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7

PPOL2_TBRVS
RNA2 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
617-651
1041-1077

(TBRV)

PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS (ISOLATE
316-347

RASPBERRY) (TOMRSV)

PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27)
1833-1866
2001-2037

(BEV)

PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
102-135
1650-1678
3220-3248

(ISOLATE NADL)

PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
102-135
1560-1588
3130-3158

(STRAIN SD-1)

PPOLG_BYMV
GENOME POLYPROTEIN
BEAN YELLOW MOSAIC VIRUS
226-255

PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21 (STRAIN COE)
1120-1157

PPOLG_COXA3
GENOME POLYPROTEIN
COXSACKIEVIRUS A23 (ECHO 9 VIRUS)
67-99

(EC-9-V)

PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9 (STRAIN GRIGGS)
1601-1633

PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
1582-1614

PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIEVIRUS B3
1585-1617

PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
1583-1615

PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
835-868
1585-1617

PPOLG_DENIS
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN
1111-1145
1485-1519
2401-2434

SINGAPORE S275/90)

PPOLG_DENIW
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN WESTERN
1112-1146

PACIFIC)

PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
61-95
1112-1146

PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
61-95
1112-1146

16681-PDK53)

PPOLG_DEN2D
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN D2-04)
61-95

PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMAICA)
61-95
1112-1146

PPOLG_DEN2N
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
364-398

NEW GUINEA C)

PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR 159/S1)
61-95
1112-1146

PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974
832-866

PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
61-95
2399-2432

PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
60-94

PPOLG_ECHG
GENOME POLYPROTEIN
ECHOVIRUS II (STRAIN GREGORY)
774-806

PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
1194-1226
1463-1501

PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN
1196-1228
1465-1503

EMC-B NONDIABETOGENIC)

PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN
1196-1228
1465-1503

EMC-D DIABETOGENIC)

PPOLG_FMDVI
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN
1036-1064
1098-1133
1167-1199
1465-1501

A10-61) (APHTHOVIRUS A)

PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN
1036-1074
1098-1133
1167-1199
1465-1501

A12) (APHTHOVIRUS A)

PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAINS
1098-1133
1167-1199
1465-1501

OIK AND OIBFS)

PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1) (HCV)
1640-1670

PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT)
1363-1393
1560-1588
3131-3159

(SWINE FEVER VIRUS)

PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN
102-135
1560-1588
3131-3159

BRESCIA) (SWINE FEVER VIRUS)

PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK) (HCV)
1640-1670

PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H) (HCV)
1640-1670

PPOLG_HCVH4
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-476)
254-291

(HCV)

PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6) (HCV)
711-742

PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8) (HCV)
711-742
1893-1924

PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
1640-1670

(HCV)

PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
1640-1670

HC-JT) (HCV)

PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
1640-1670

TAIWAN) (HCV

PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
1514-1550
2068-2099

PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
1514-1550
2068-2099

PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
1514-1550
2068-2099

PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
1515-1551
2069-2100

PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
1515-1551
2069-2100

PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
1515-1551
2069-2100

PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN
831-868
1517-1553

AGM-27)

PPOLG_HRV14
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14 (HRV-14)
1094-1132
2005-2041

PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B
1453-1485
1816-1849
1983-2019

(HRV-1B)

PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2 (HRV-2)
1446-1475
1809-1842
1976-2012

PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89 (HRV-89)
1460-1492
1823-1856
1990-2026

PPOLG_HUEV7
GENOME POLYPROTEIN
HUMAN ENTEROVIRUS 70 (STRAIN J670/71
1108-1145

PPOLG_IBDVO
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
222-260

(STRAIN OH)

PPOLG_JAEV1
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
61-95
1233-1269
1516-1549
2779-2813
3274-3311

(STRAIN SA-14)

PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
61-95
1233-1269
1516-1549
2779-2813
3274-3311

(STRAIN SA(V))

PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
61-95
1233-1269
1516-1549
2779-2813
3274-3311

(STRAIN JAOARS982)

PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
1161-1197

(STRAIN NAKAYAMA)

PPOLG_KUNJM
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
61-95
561-594
3275-3312

PPOLG_LANVT
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
1157-1188
1519-1551
2230-2264
2366-2398
3095-3132

PPOLG_MCFA
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT (CFA
1174-1206
1330-1359

FLAVIVIRUS)

PPOLG_MDMV
GENOME POLYPROTEIN
MAIZE DWARF MOSAIC VIRUS (MDMV)
322-351

PPOLG_MVEV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
61-95
1305-1342

PPOLG_OMV
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
344-376

PPOLG_PEMVC
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS (CALIFORNIA
826-859
1086-1124

ISOLATE) (PEMV)

PPOLG_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1121-1158

PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
1122-1159

PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
1120-1157

PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
1120-1157

PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAIN 23127)
1119-1156

PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAINS
1119-1156

P3/LEON/37 AND P3/LEON 12A[1]B)

PPOLG_PPVD
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D) (PPV)
2960-2991
3084-3113

PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN EL AMAR)
1337-1368
1461-1490

(PPV)

PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT) (PPV)
2944-2975
3068-3097

PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC)
2959-2990
3083-3112

(PPV)

PPOLG_PSBMV
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS
931-966
1411-1445
3149-3178

(STRAIN DPDI)

PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN)
1302-1336
3004-3033

(PVY)

PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N) (PVY)
1302-1336

PPOLG_PYFVI
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE
230-262
1110-1139
1903-1931

P-121) (PYFV)

PPOLG_SBMVN
GENOME POLYPROTEIN
SOYBEAN MOSAIC VIRUS (STRAIN N)
245-274

PPOLG_STEVM
GENOME POLYPROTEIN
ST LOUIS ENCEPHALITIS VIRUS
61-95
1301-1331

(STRAIN M51-7)

PPOLG_SUMVS
GENOME POLYPROTEIN
SUGARCANE MOSAIC VIRUS (STRAIN SC)
307-336

PPOLG_SVDVH
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
1585-1617

(STRAIN H/3′ 76)

PPOLG_SVDVU
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
1585-1617

(STRAIN UKG/27/72)

PPOLG_TBEVS
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
835-869
1157-1188
2366-2398
3093-3130

(STRAIN SOFJIN) (TBEV)

PPOLG_TBEVW
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
1157-1188
2366-2398
3095-3132

(WESTERN SUBTYPE) (THEV)

PPOLG_TEV
GENOME POLYPROTEIN
TOBACCO ETCH VIRUS (TEV)
827-865
2998-3027

PPOLG_TMEVB
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1074-1102
1193-1221
1470-1508
1908-1939

VIRUS (STRAIN BEAN 8386)

PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1072-1100
1191-1219
1468-1506
1906-1937

VIRUS (STRAIN DA)

PPOLG_TMEVG
GENMOE POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1074-1102
1193-1221
1470-1508
1908-1939

VIRUS (STRAIN GDVH)

PPOLG_TUMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS (TUMV)
1573-1602

PPOLG_TVMV
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS (TVMV)
2698-2733

PPOLG_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
958-987

PPOLG_WNV
GENOME POLYPROTEIN
WEST NILE VIRUS
61-95
557-590
3272-3309

PPOLG_YEFV1
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
1157-1186
1228-1266
1495-1531
2308-2340
3092-3127

PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN
1157-1186
1228-1266
1495-1531
2308-2340
3092-3127

PASTEUR 17D-204)

PPOLG_ZYMV
GENOME POLYPROTEIN
ZUCCHINI YELLOW MOSAIC VIRUS (ZYMV)
329-358

PPOLH_POLIM
GENOME POLYPROTEIN
POLIOVIRUS TYPE I (STRAIN MAHONEY)
1122-1159

PPOLH_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
244-273

PPOLN_EEVVT
NONSTRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS
613-648
1436-1468

VIRUS (STRAIN TRINIDAD DONKEY)

PPOLN_FCVC6
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN CFI/68 FIV)
327-365

(FCV)

PPOLN_FCVF4
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN JAPANESE F4)
300-333

(FCV)

PPOLN_FCVF9
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN F9) (FCV)
803-841

PPOLN_HEVBU
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN BURMA) (HEV)
1618-1652

PPOLN_HEVME
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MEXICO) (HEV)
1616-1650

PPOLN_HEVMY
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MYANMAR)
1618-1652

(HEV)

PPOLN_HEVPA
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN PAKISTAN)
1617-1651

(HEV)

PPOLN_MIDDV
NONSTRUCTURAL POLYPROTEIN
MIDDELBURG VIRUS
25-57

PPOLN_ONRVG
NONSTRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
1144-1180
1404-1439

(ONN)

PPOLN_RHDV
NON-STRUCTURAL POLYPROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
299-337
1562-1594

(RHDV

PPOLN_SFV
NONSTRUCTURAL POLYPROTEIN
SEMLIKIFOREST VIRUS
1146-1175
1406-1441

PPOLN_SINDO
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/
1454-1486

STRAIN EDSBYN 82-5)

PPOLN_SINDV
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAIN HRSP)
1454-1486

PPOLS_EEEV
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
524-556

PPOLS_EEEV3
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
525-557

(STRAIN VA33[TEN BROECK])

PPOLS_EEVV8
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1203-1239

(STRAIN TC-83)

PPOLS_EEVVT
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1203-1239

(STRAIN TRINIDAD DONKEY)

PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
1150-1182
1201-1235

(ONN)

PPOLS_RRVN
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092) (RRV)
1216-1250

PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48) (RRV)
1216-1250

PPOLS_SFV
STRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
1215-1251

PPOLS_SINDO
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/
1197-1233

STRAIN EDSBYN 82-5)

PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
1197-1233

PPOLS_WEEV
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
1188-1224

PPOL_BIV06
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
742-773
\

(ISOLATE 106) (BIV)

PPOL_BIV27
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
742-773

(ISOLATE 127) (BIV)

PPOL_BLVAU
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN
343-374

ISOLATE) (BLV)

PPOL_CAEVC
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
206-240
322-355

(STRAIN CORK) (CAEV)

PPOL_COYMV
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS
1234-1267
1484-1518
1750-1788
1800-1831

(COYMV)

PPOL_EIAV9
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
166-198
506-539

(CLONE 1369) (EIAV)

PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
166-198
506-539

(CLONE CL22) (EIAV)

PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
166-198
505-538

(ISOLATE WYOMING) (EIAV)

PPOL_FOAMV
POL POLYPROTEIN
HUMAN SPUMARETROVIRUS (FOAMY
126-154

VIRUS)

PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
348-378

PPOL_HTLIA
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
657-688

(STRAIN ATK) (HTLV-1)

PPOL_HTLIC
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
657-688

(CARIBBEAN ISOLATE) (HTLV-1)

PPOL_HVIA2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-364
500-537

(ARV2/SF2 ISOLATE) (HIV-1)

PPOL_HVIB1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-376
512-549

(BH10 ISOLATE) (HIV-1)

PPOL_HVIB5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-376
512-549

(BH5 ISOLATE) (HIV-1)

PPOL_HVIBR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-376
512-549

(BRU ISOLATE) (HIV-1)

PPOL_HVIEL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536

(ELI ISOLATE) (HIV-1)

PPOL_HVIH2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-364
500-537

(HXB2 ISOLATE) (HIV-1)

PPOL_HVIJR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
335-368
504-541

(JRCSF ISOLATE) (HIV-1)

PPOL_HVIMA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363

(MAL ISOLATE) (HIV-1)

PPOL_HVIMN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-367
503-540

(MN ISOLATE) (HIV-1)

PPOL_HVIN5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-364
500-537

(NEW YORK-5 ISOLATE) (HIV-1)

PPOL_HVIND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536

(NDK ISOLATE) (HIV-1)

PPOL_HVIOY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-364
500-537

(OYI ISOLATE) (HIV-1)

PPOL_HVIPV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-376
512-549

(PV22 ISOLATE) (HIV-1)

PPOL_HVIRH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536

(RF/HAT ISOLATE) (HIV-1)

PPOL_HVIU4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536

(STRAIN UGANDAN/ISOLATE

PPOL_HVIZ2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536

(Z2/CDC-Z34 ISOLATE) (HIV-1)

PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
353-386

(ISOLATE CAM2) (HIV-2)

PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
353-386

(ISOLATE NIH-Z) (HIV-2)

PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
354-387

(ISOLATE ROD) (HIV-2)

PPOL_IPHA
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
460-496

(IAP-H18

PPOL_JSRV
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
186-220

PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS (MPMV)
650-681

PPOL_OMVVS
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
61-98
102-130
182-216
298-331

PPOL_RTBV
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
788-824
891-919
1399-1433

PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
788-824
891-919
1399-1433

(ISOLATE PHILIPPINES) (RTBV)

PPOL_SFV3L
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
337-365

(SFV-3)

PPOL_SIVCE
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
355-388
524-561

(SIV(CPZ)) (CIV)

PPOL_SOCMV
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
17-55
58-89

PPOL_SRV1
POL POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
650-681

PPOL_VILV
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
80-117
201-235
317-350

PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS
80-117
317-350

(STRAIN 1514/CLONE LV1-1KS1)

PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS
80-117
201-235
317-350

(STRAIN 1514/CLONE LV1-1KS2)

PPP41_HSV6G
PHOSPHOPROTEIN P41
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
60-91

PPTP_NPVAC
PROTEIN-TYROSINE PHOSPHATASE
AUTOGRAPHA CALIFORNICA NUCLEAR
53-85

POLYHEDROSIS VIRUS

PREEP_CSV
REPEAT ELEMENT PROTEIN
CAMPOLETIS SONORENSIS VIRUS (CSV)
113-149

PREV_BIV27
REV PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
74-109

(ISOLATE 127) (BIV)

PREV_EIAV9
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
44-79

(CLONE 1369) (EIAV)

PREV_EIAVC
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
44-79

(CLONE CL22) (EIAV)

PREV_EIAVY
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
74-109

(ISOLATE WYOMING) (EIAV)

PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
25-62

(TYO-1 ISOLATE) (SIV-AGM)

PRIRI_ASFM2
RIBONUCLEOSIDE-DIPHOSPHATE
AFRICAN SWINE FEVER VIRUS
630-666

REDUCTASE LARGE CH
(ISOLATE MALAWI LIL 20/1) (ASFV)

PRIRI_HCMVA
RIBONUCLEOSIDE-DIPHOSPHATE
HUMAN CYTOMEGALOVIRUS
279-311
393-430
449-477

REDUCTASE LARGE CH
(STRAIN AD169)

PRIRI_HSVEB
RIBONUCLEOSIDE-DIPHOSPHATE
EQUINE HERPESVIRUS TYPE 1
60-92
503-531

REDUCTASE LARGE CH
(STRAIN AB4P) (EHV-1)

PRIRI_VACCC
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN COPENHAGEN)
203-235

REDUCTASE LARGE CH

PRIRI_VACCV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN WR)
203-235

REDUCTASE LARGE CH

PRIRI_VARV
RIBONUCLEOSIDE-DIPHOSPHATE
VARIOLA VIRUS
203-235

REDUCTASE LARGE CH

PRIRI_VZVD
RIBONUCLEOSIDE-DIPHOSPHATE
VARICELLA-ZOSTER VIRUS
34-72
221-254
488-516

REDUCTASE LARGE CH
(STRAIN DUMAS) (VZV)

PRMIL_AVEVR
RMIL SERINE/THREONINE-PROTEIN KINASE
AVIAN ROUS-ASSOCIATED VIRUS TYPE 1
149-177

TRANSFORM

PRMIL_AVII1
RMIL SERINE/THREONINE-PROTEIN KINASE
AVIAN RETROVIRUS IC10
133-161

TRANSFORM

PRP94_VACCV
RNA-POLYMERASE-ASSOCIATED
VACCINIA VIRUS (STRAIN WR), AND
399-427

TRANSCRIPTION SPECIF
VACCINIA VIRUS (STRAIN COPENHAGE

PRP94_VARV
RNA-POLYMERASE-ASSOCIATED
VARIOLA VIRUS
399-427

TRANSCRIPTION SPECIF

PRPO1_VACCV
DNA-DIRECTED RNA POLYMERASE 147 KD
VACCINIA VIRUS (STRAIN WR)
1005-1033

POLYPEPTIDE

PRPO2_CAPVK
DNA-DIRECTED RNA POLYMERASE 132 KD
CAPRIPOXVIRUS (STRAIN KS-1)
297-333
667-696

POLYPEPTIDE

PRPO2_COWPX
DNA-DIRECTED RNA POLYMERASE 132 KD
COWPOX VIRUS (CPV)
202-236
542-578

POLYPEPTIDE

PRPO2_VACCV
DNA-DIRECTED RNA POLYMERASE 132 KD
VACCINIA VIRUS (STRAIN WR), AND
202-236
542-578

POLYPEPTIDE
VACCINIA VIRUS (STRAIN COPENHAGE

PRPO2_VARV
DNA-DIRECTED RNA POLYMERASE 132 KD
VARIOLA VIRUS
202-236
542-578

POLYPEPTIDE

PRPO7_VACCV
DNA-DIRECTED RNA POLYMERASE 19 KD
VACCINIA VIRUS (STRAIN WR), AND
38-66

POLYPEPTIDE
VACCINIA VIRUS (STRAIN COPENHAGE

PRPO7_VARV
DNA-DIRECTED RNA POLYMERASE 19 KD
VARIOLA VIRUS
38-66

POLYPEPTIDE

PRPO8_FOWP1
DNA-DIRECTED RNA POLYMERASE 18 KD
FOWLPOX VIRUS (STRAIN FP-1)
57-88

POLYPEPTIDE

PRPOA_LEVL
RNA-DIRECTED RNA POLYMERASE
LELYSTAD VIRUS (LV)
1233-1268
3133-3163
3426-3457

PRPOL_EAV
RNA-DIRECTED RNA POLYMERASE
EQUINE ARTERITIS VIRUS (EAV)
171-207
3041-3072

PRRP1_DHVI1
RNA-DIRECTED RNA POLYMERASE
DHORI VIRUS (STRAIN INDIAN/1313/61)
96-125
199-234

SUBUNIT P1
(DHO)

PRRP1_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
138-170

SUBUNIT P1
(STRAIN A/VICTORIA/3/75)

PRRP1_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/33/50)
564-598

SUBUNIT P1

PRRP2_IAANN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
398-435
484-518

SUBUNIT P2
(STRAIN A/ANN ARBOR/6/60)

PRRP2_IADH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/DUCK/HOKKAIDO/8/80)

PRRP2_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/FOWL
484-518

SUBUNIT P2
PLAGUE VIRUS/ROSTOCK/34)

PRRP2_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/GULL/MARYLAND/704/77)

PRRP2_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/EQUINE/LONDON/1416/73)

PRRP2_IAHTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/EQUINE/TENNESSEE/5/86)

PRRP2_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/KOREA/426/68)

PRRP2_IALE1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/LENINGRAD/134/57)

PRRP2_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/LENINGRAD/134/17/57)

PRRP2_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/MALLARD/NEW YORK/6750/78)

PRRP2_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
484-518

SUBUNIT P2

PRRP2_IAPI0
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/PINTAIL/ALBERTA/119/79)

PRRP2_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/PUERTO RICO/8/34)

PRRP2_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/RUDDY
484-518

SUBUNIT P2
TURNSTONE/NEW JERSEY/47/85)

PRRP2_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/SINGAPORE/1/57)

PRRP2_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/TURKEY/MINNESOTA/833/80)

PRRP2_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/VICTORIA/3/75)

PRRP2_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/WILSON-SMITH/33)

PRRP2_IAZH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/SWINE/HONG KONG/81/78)

PRRP2_IAZH3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/SWINE/HONG KONG/126/82)

PRRP2_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/SWINE/IOWA/15/30)

PRRP2_IAZTF
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518

SUBUNIT P2
(STRAIN A/SWINE/TENNESSEE/26/77)

PRRP3_IABUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
515-553
585-613

SUBUNIT P3
(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)

PRRP3_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/FOWL
585-613

SUBUNIT P3
PLAGUE VIRUS/ROSTOCK/34)

PRRP3_IAFPW
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/FOWL
579-613

SUBUNIT P3
PLAGUE VIRUS/WEYBRIDGE)

PRRP3_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613

SUBUNIT P3
(STRAIN A/GULL/MARYLAND/704/77)

PRRP3_IAGUA
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613

SUBUNIT P3
(STRAIN A/GULL/ASTRAKHAN/227/84)

PRRP3_IAHPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613

SUBUNIT P3
(STRAIN A/EQUINE/PRAGUE/1/56)

PRRP3_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613

SUBUNIT P3
(STRAIN A/MALLARD/NEW YORK/6750/78)

PRRP3_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/RUDDY
585-613

SUBUNIT P3
TURNSTONE/NEW JERSEY/47/85)

PRRP3_IASE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613

SUBUNIT P3
(STRAIN A/SEAL/MASSACHUSETTS/133/82)

PRRP3_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613

SUBUNIT P3
(STRAIN A/TURKEY/MINNESOTA/833/80)

PRRP3_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613

SUBUNIT P3
(STRAIN A/SWINE/IOWA/15/30)

PRRP3_IAZTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613

SUBUNIT P3
(STRAIN A/SWINE/TENNESSEE/24/77)

PRRP3_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN
735-769

SUBUNIT P3
ARBOR/1/66[COLD-ADAPTED])

PRRP3_INSAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN
735-769

SUBUNIT P3
ARBOR/1/66[WILD-TYPE])

PRRP3_INCBE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85)
609-641

SUBUNIT P3

PRRP3_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/JJ/50)
609-641

SUBUNIT P3

PRRP3_THOGV
RNA-DIRECTED RNA POLYMERASE
THOGOTO VIRUS (THO)
109-145
324-356

SUBUNIT P3

PRRPA_CVH22
RNA-DIRECTED RNA POLYMERASE
HUMAN CORONAVIRUS (STRAIN 229E)
410-443
712-745
1262-1295
1963-1999
2078-2112
2474-2508
3153-3191

PRRPA_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
708-740
3544-3577
3757-3785
3933-3961

PRRPB_BEV
RNA-DIRECTED RNA POLYMERASE
BERNE VIRUS (BEV)
941-969
2137-2169
2178-2206

PRRPB_CVMA5
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN A59)
346-380
684-714
1689-1722
2698-2730

PRRPB_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
346-380
684-714
1687-1720
2356-2391
2696-2728

PRRPB_CVPFS
RNA-DIRECTED RNA POLYMERASE
PORCINE TRANSMISSIBLE
173-207
322-350
482-515

GASTROENTERITIS CORONAVIRUS

PRRPB_CVPR8
RNA-DIRECTED RNA POLYMERASE
PORCINE RESPIRATORY CORONAVIRUS
80-113

PRRPB_IBVB
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS
636-670

(STRAIN BEAUDETTE) (IBV)

PRRPL_BUNYW
RNA POLYMERASE
BUNYAMWERA VIRUS
303-331
1096-1128

PRRPL_HANTV
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118) (KOREAN
1938-1971

HEMORRHAGIC FEVER VIRUS)

PRRPL_HRSVA
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
892-922
1181-1213

(STRAIN A2)

PRRPL_MABVM
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN MUSOKE)
144-176
698-736
1042-1074
1797-1832

PRRPL_MABVP
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN POPP)
144-176
698-736
1042-1074
2223-2253

PRRPL_MEASE
RNA POLYMERASE BETA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
193-227
647-683
788-825
1160-1192
1886-1914

PRRPL_MUMPM
RNA POLYMERASE BETA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA
1882-1913

VACCINE)

PRRPL_NDVB
RNA POLYMERASE BETA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN
626-661
1571-1603

BEAUDETTE C/45) (NDV)

PRRPL_PI2HT
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN
268-305
558-595
654-688
1562-1599
1881-1912
2025-2053

TOSHIBA) (PIV-2)

PRRPL_PI3H4
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN
41-76
735-764
784-814
2111-2139

NIH 47885)

PRRPL_RABVP
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN PV)
60-90
804-837
1365-1394
1930-1962

PRRPL_RABVS
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
60-90
804-837
1365-1394
1930-1962

PRRPL_RDV
RNA-DIRECTED RNA POLYMERASE
RICE DWARF VIRUS (RDV)
1293-1323

PRRPL_RVFVZ
RNA-DIRECTED RNA POLYMERASE
RIFT VALLEY FEVER VIRUS (STRAIN
1018-1055
2009-2044

ZH-548 M12) (RVFV)

PRRPL_SEND5
RNA POLYMERSE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
194-231
233-269
735-764
784-814
2140-2177

PRRPL_SENDE
RNA POLYMERSE BETA SUBUNIT
SENDAI VIRUS (STRAIN ENDERS)
14-51
53-89
555-584
1927-1955
1960-1997

PRRPL_SENDZ
RNA POLYMERSE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z)
194-231
233-269
735-764
784-814
2140-2177

PRRPL_SEOU8
RNA-DIRECTED RNA POLYMERASE
SEOUL VIRUS (STRAIN 80-39)
394-431
1938-1971
2081-2119

PRRPL_SV5WR
RNA POLYMERSE BETA SUBUNIT
SIMIAN VIRUS 5 (STRAIN 21004-WR) (SV5)
557-594
1094-1122
2020-2051

PRRPL_SYNV
RNA POLYMERSE BETA SUBUNIT
SONCHUS YELLOW NET VIRUS (SYNV)
126-164
605-634
820-856
918-951
1484-1517

PRRPL_TSWVB
RNA-DIRECTED RNA POLYMERASE
TOMATO SPOTTED WILT VIRUS (BRAZILIAN
43-79
843-880
2266-2298
2369-2403
2481-2511
2805-2840

ISOLATE CPNH1/BR-01) (TSWV)

PRRPL_UUK
RNA POLYMERASE
UUKUNIEMI VIRUS (UUK)
1017-1051
1147-1177
1293-1321
2060-2095

PRRPL_VSVJH
RNA POLYMERSE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
209-246
312-349
1011-1039
1662-1697
1956-1989

PRRPL_VSVJO
RNA POLYMERSE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
1011-1039
1956-1989

PRRPL_VSVSJ
RNA POLYMERSE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (STRAIN
138-171
209-246
312-349
961-999
1011-1039
1739-1772
2051-2087

SAN JUAN)

PRRPO_BWYVF
PUTATIVE RNA-DIRECTED RNA
BEET WESTERN YELLOWS VIRUS (ISOLATE
346-374

POLYMERASE
FL-1) (BWYV)

PRRPO_BYDVI
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS (ISOLATE
722-755

POLYMERASE
MAV-PSI) (BYDV)

PRRPO_BYDVP
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS (ISOLATE
722-755

POLYMERASE
PAV) (BYDV)

PRRPO_BYDVR
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS (ISOLATE
722-755

POLYMERASE
P-PAV) (BYDV)

PRRPO_CARMV
PROBABLE RNA-DIRECTED RNA
CARNATION MOTTLE VIRUS (CARMV)
4-37

POLYMERASE

PRRPO_CGMVS
PUTATIVE RNA-DIRECTED RNA
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
443-481
725-755
1095-1132
1565-1597

POLYMERASE
(WATERMELON STRAIN S14)

PRRPO_CNV
PROBABLE RNA-DIRECTED RNA
CUCUMBER NECROSIS VIRUS (CNV)
470-501

POLYMERASE

PRRPO_CRM
PROBABLE RNA-DIRECTED RNA
CYMBIDIUM RINGSPOT VIRUS
28-62
267-300
470-501

POLYMERASE

PRRPO_IBDV5
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
186-218
274-302

POLYMERASE
(STRAIN 52/70) (IBDV)

PRRPO_IBDVA
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
260-288
511-543
599-627

POLYMERASE

PRRPO_IPNVJ
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS
360-390
749-778

POLYMERASE
(SEROTYPE JASPER)

PRRPO_IPNVS
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS
360-390
749-778

POLYMERASE
(SEROTYPE SP) (IPNV)

PRRPO_LYCVA
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
109-137
263-291
2077-2106

(STRAIN ARMSTRONG)

PRRPO_LYCVW
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
109-137

(STRAIN WE)

PRRPO_MCMV
PROBABLE RNA-DIRECTED RNA
MAIZE CHLOROTIC MOTTLE VIRUS (MCMV)
16-48
53-81

POLYMERASE

PRRPO_PLRV1
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS (STRAIN 1) (PLRV
576-607

POLYMERASE

PRRPO_PLRVW
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS (STRAIN
576-607

POLYMERASE
WAGENINGEN) (PLRV)

PRRPO_PPMVS
PUTATIVE RNA-DIRECTED RNA
PEPPER MILD MOTTLE VIRUS (STRAIN
375-407
702-730
859-891
1069-1106
1533-1565

POLYMERASE
SPAIN) (PPMV)

PRRPO_RCNMV
PUTATIVE RNA-DIRECTED RNA
RED CLOVER NECROTIC MOSAIC VIRUS
278-314
320-353

POLYMERASE
(RCNMV)

PRRPO_REOVJ
RNA-DIRECTED RNA
REOVIRUS (TYPE 2/STRAIN D5/JONES)
284-315

POLYMERASE

PRRPO_ROTBR
RNA-DIRECTED RNA
BOVINE ROTAVIRUS (STRAIN RF)
25-60
200-231
247-276

POLYMERASE SUBUNIT VPI

PRRPO_ROTBU
RNA-DIRECTED RNA
BOVINE ROTAVIRUS (STRAIN UK)
200-231
247-276

POLYMERASE SUBUNIT VPI

PRRPO_ROTPG
RNA-DIRECTED RNA
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
200-231
247-276

POLYMERASE SUBUNIT VPI

PRRPO_ROTS1
RNA-DIRECTED RNA
SIMIAN II ROTAVIRUS (STRAIN SA11)
25-60
200-231
247-276

POLYMERASE SUBUNIT VPI

PRRPO_TACV
RNA POLYMERASE
TACARIBE VIRUS
17-52
109-138
2078-2112

PRRPO_TBSVC
PROBABLE RNA-DIRECTED RNA
TOMATO BUSHY STUNT VIRUS (STRAIN
470-501

POLYMERASE
CHERRY) (TBSV)

PRRPO_TCV
PROBABLE RNA-DIRECTED RNA
TURNIP CRINKLE VIRUS (TCV)
280-318

POLYMERASE

PRRPO_TMGMV
PUTATIVE RNA-DIRECTED RNA
TOBACCO MILD GREEN MOSAIC VIRUS
67-97
128-159
209-244
376-406
450-483
855-887
1527-1559

POLYMERASE
(TMV STRAIN U2)

PRRPO_TMV
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (VULGARE) (TMV)
128-159
376-406
700-728
1533-1565

POLYMERASE

PRRPO_TMVKR
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN
128-159
376-406
700-728
1533-1565

POLYMERASE
KOREAN) (TMV)

PRRPO_TMVTO
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN
128-159
376-406
700-728
857-889
1533-1565

POLYMERASE
TOMATO/L) (TMV)

PRRPO_TNVA
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN
231-263

A) (TNV)

PRRPO_TNVD
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN
5-40
234-270

D) (TNV)

PRRPP_CDVO
RNA POLYMERASE ALPHA SUBUNIT
CANINE DISTEMPER VIRUS (STRAIN
295-332

ONDERSTEPOORT) (CDV)

PRRPP_MEASE
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
295-332

PRRPP_MEAS1
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN IP-3-CA)
295-332

PRRPP_MEASY
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN YAMAGATA-1)
295-332

PRRPP_MUMP1
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN SBL-1)
211-248

PRRPP_MUMPE
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN ENDERS)
212-249

PRRPP_MUMPM
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA
212-249

VACCINE)

PRRPP_NDVA
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN
220-255

AUSTRALIA-VICTORIA/32) (NDV)

PRRPP_NDVB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN
220-255

BEAUDETTE C/45) (NDV)

PRRPP_P12H
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (PIV-2
216-253

PRRPP_P12HT
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN
216-253

TOSHIBA) (PIV-2)

PRRPP_P14HA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN
220-257
332-364

TOSHIBA) (PIV-4A)

PRRPP_P14HB
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4B VIRUS (STRAIN
220-257
332-364

68-333) (PIV-4B)

PRRPP_PIRYV
RNA POLYMERASE ALPHA SUBUNIT
PIRY VIRUS
134-168

PRRPP_RABVA
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN AVO1)
216-244

PRRPP_RABVC
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN CVS-11)
216-244

PRRPP_RABVE
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN ERA), AND RABIES
216-244

VIRUS (STRAIN PM)

PRRPP_RABVP
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN PV)
89-122
216-244

PRRPP_RABVS
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
216-244

PRRPP_SEND5
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
530-566

PRRPP_SEND6
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN 6/94)
530-566

PRRPP_SENDF
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN FUSHIMI)
530-566

PRRPP_SENDH
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN HARRIS)
530-566

PRRPP_SENDZ
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z)
530-566

PRRPP_SV5
RNA POLYMERASE ALPHA SUBUNIT
SIMIAN VIRUS 5 (STRAIN W3) (SV5)
199-236

PRRPP_VSVJM
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE
198-230

NEW JERSEY/STRAIN MISSOUR

PRRPP_VSVJO
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE
197-230

NEW JERSEY/STRAIN OGDEN)

PSODC_VACCC
SUPEROXIDE DISMUTASE LIKE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
19-55

PSODC_VACCV
SUPEROXIDE DISMUTASE LIKE PROTEIN
VACCINIA VIRUS (STRAIN WR)
19-55

PSODC_VARV
SUPEROXIDE DISMUTASE LIKE PROTEIN
VARIOLA VIRUS
19-55

PSPHR_AMEPV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS
58-86
138-172
627-659
671-701

(AMEPV)

PSPI1_MYXVL
SERPIN 1
MYXOMA VIRUS (STRAIN LAUSANNE)
167-200

PSPI3_VACCC
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN COPENHAGEN)
112-140

PSPI3_VACCV
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN WR)
112-140

PSPI3_VARV
SERINE PROTEINASE INHIBITOR 1
VARIOLA VIRUS
116-144

PIAG8_FOWPV
TRANS-ACTIVATOR PROTEIN FP0
FOWLPOX VIRUS
199-230

PTALA_BFDV
LARGE T ANTIGEN
BUDDERIGAR FLEDGLING DISEASE VIRUS
99-129
172-210
461-491

(BFDV)

PTAMI_POVHA
MIDDLE T ANTIGEN
HAMSTER POLYOMAVIRUS
106-138

PTAMI_POVM3
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
43-80

PTAMI_POVMA
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
43-80

PTAMI_POVMC
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN
43-80

CRAWFORD SMALL-PLAQUE)

PTASM_POVBA
SMALL T ANTIGEN
POLYOMAVIRUS BK (STRAIN AS)
130-162

PTASM_POVBK
SMALL T ANTIGEN
POLYOMAVIRUS BK
130-162

PTASM_POVHA
SMALL T ANTIGEN
HAMSTER POLYOMAVIRUS
106-138

PTASM_POVMA
SMALL T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
43-80

PTASM_SV40
SMALL T ANTIGEN
SIMIAN VIRUS 40 (SV40)
132-164

PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
143-173
1469-1503
1791-1819
3102-3137

(HUMAN HERPESVIRUS 4)

PTEGU_HCMVA
PROBABLE LARGE TEGUMENT PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN
161-192
699-736
812-840
2199-2228

AD169)

PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
222-259
566-601
615-643
1436-1469
2037-2072

PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
265-297
569-589
1072-1106
3363-3392

AB4P) (EHV-1)

PTEGU_HSVSA
PROBABLE LARGE TEGUMENT PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
467-505
714-751
823-861
926-960
1503-1536
2421-2457

PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
369-400

PTMAF_AVIS4
TRANSFORMING PROTEIN MAF
AVIAN MUSCULOAPONEUROTIC
230-267

FIBROSARCOMA VIRUS AS42

PTOP2_ASFB7
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (STRAIN
119-153
1105-1142

BA71V) (ASFV)

PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (ISOLATE
119-153
1104-1141

MALAWILIL 20/1) (ASFV)

PTREL_AVIRE
REL TRANSFORMING PROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
189-226

PTYSY_VZVD
THYMIDYLATE SYNTHASE
VARICELLA-ZOSTER VIRUS (STRAIN
121-156

DUMAS) (VZV)

PUIL_HSV6U
PROTEIN IL
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
171-203

UGANDA-1102)

PUDPE_NPVAC
ECDYSTEROID UDP-
AUTOGRAPHA CALIFORNICA NUCLEAR
185-219
387-425
452-484

GLUCOSYLTRANSFERASE PRECURSO
POLYHEDROSIS VIRUS (ACMNPV)

PUL02_HCMVA
HYPOTHETICAL PROTEIN UL2
HUMAN CYTOMEGALOVIRUS (STRAIN
25-59

AD169)

PUL06_EBV
VIRION PROTEIN BDRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
355-386

(HUMAN HERPESVIRUS 4)

PUL06_HSVI1
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
404-436

PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
222-251
437-475

AB4P) (EHV-1)

PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
299-330

PUL06_VZVD
VIRION GENE 54 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
223-252
502-530

DUMAS) (VZV)

PUL07_HCMVA
HYPOTHETICAL PROTEIN UL7
HUMAN CYTOMEGALOVIRUS (STRAIN
186-216

AD169)

PUL07_HSVEB
GENE 55 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
Nov-39

AB4P) (EHV-1)

PUL08_HCMVA
HYPOTHETICAL PROTEIN UL8
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
65-96

PUL08_HSVI1
PROTEIN UL8
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
614-648

PUL08_VZVD
GENE 52 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
227-255

DUMAS) (VZV)

PUL09_HSVI1
ORIGIN OF REPLICATION BINDING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
678-713

PUL09_VZVD
ORIGIN OF REPLICATION BINDING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
168-204

DUMAS) (VZV)

PUL14_PRVN3
UL14 PROTEIN HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3) (PRV)
40-76

PUL16_HSVI1
PROTEIN UL16
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
22-52

PUL17_HSV6U
PROTEIN 10R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
302-339

UGANDA-1102)

PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
294-328

AB4P) (EHV-1)

PUL21_PRVN3
PROTEIN UL21 HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3) (PRV)
242-271

PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
56-92
375-412

DUMAS) (VZV)

PUL24_HCMVA
HYPOTHETICAL PROTEIN UL24
HUMAN CYTOMEGALOVIRUS (STRAIN
52-87

AD169)

PUL24_ILTVT
PROTEIN UL24 HOMOLOG
INFECTIOUS LARYNGOTRACHEITIS VIRUS
158-196

(STRAIN THORNE V882)

PUL25_HSVEB
VIRION PROTEIN UL25
EQUINE HERPESVIRUS TYPE 1 (STRAIN
343-379

AB4P) (EHV-1)

PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
290-323

PUL25_VZVD
VIRION GENE 34 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
540-571

DUMAS) (VZV)

PUL28_HCMVA
HYPOTHETICAL PROTEIN UL28
HUMAN CYTOMEGALOVIRUS (STRAIN
287-316

AD169)

PUL31_HCMVA
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN
464-501

AD169)

PUL31_HSVA
GENE 69 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
163-197

PUL32_EBV
PROBABLE MAJOR ENVELOPE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
367-405

GLYCOPROTEIN BFLF1
(HUMAN HERPESVIRUS 4)

PUL32_HSVI1
PROBABLE MAJOR ENVELOPE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
404-438
564-592

GLYCOPROTEIN UL32

PUL32_HSVEB
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPESVIRUS TYPE 1
81-115

PUL32_HSVSA
PROBABLE MAJOR ENVELOPE
HERPESVIRUS SAIMIRI (STRAIN 11)
276-307

GLYCOPROTEIN 68

PUL32_VZVD
PROBABLE MAJOR ENVELOPE
VARICELLA-ZOSTER VIRUS (STRAIN
553-581

GLYCOPROTEIN 26
DUMAS) (VZV)

PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
98-130

PUL35_HCMVA
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN
138-169

AD169)

PUL36_HCMVA
HYPOTHETICAL PROTEIN UL36
HUMAN CYTOMEGALOVIRUS (STRAIN
186-223

AD169)

PUL37_EBV
PROTEIN BOLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
85-123

(HUMAN HERPESVIRUS 4)

PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
702-732
778-812

AB4P) (EHV-1)

PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
566-602

PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
598-629
706-736
776-806

DUMAS) (VZV)

PUL38_HCMVA
HYPOTHETICAL PROTEIN UL38
HUMAN CYTOMEGALOVIRUS (STRAIN
157-188

AD169)

PUL41_VZVD
HOST SHUTOFF VIRION PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
274-307

DUMAS) (VZV)

PUL43_HSVI1
MEMBRANE PROTEIN UL43
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
41-70

PUL45_HSVI1
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
34-64
277-308

DUMAS) (VZV)

PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN
438-471
741-777

AD169)

PUL47_HSVE4
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 4
580-615

PUL47_HSVEB
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
587-622

AB4P) (EHV-1)

PUL49_HSVI1
TEGUMENT PROTEIN UL49
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17
226-259

PUL49_HSVBP
TEGUMENT PROTEIN UL49 HOMOLOG
BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2)
135-168

PUL52_EBV
PROBABLE DNA REPLICATION PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
582-617

BSLF1
(HUMAN HERPESVIRUS 4)

PUL52_HSVI1
DNA REPLICATION PROTEIN UL52
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
599-629
771-805

PUL52_HSVEB
DNA REPLICATION PROTEIN UL52
EQUNE HERPESVIRUS TYPE 1 (STRAIN
316-344
580-618
912-947

AB4P) (EHV-1)

PUL52_HSVSA
PROBABLE DNA REPLICATION GENE 56
HERPESVIRUS SAIMIRI (STRAIN 11)
229-267
374-411

PROTEIN

PUL53_HCMVA
PROTEIN UL53
HUMAN CYTOMEGALOVIRUS (STRAIN
213-248

AD169)

PUL53_HSV6U
UL53 PROTEIN HOMOLOG
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
105-139

UGANDA-1102)

PUL60_HCMVA
HYPOTHETICAL PROTEIN UL60
HUMAN CYTOMEGALOVIRUS (STRAIN
120-148

AD169

PUL70_HCMVA
PROBABLE REPLICATION PROTEIN UL70
HUMAN CYTOMEGALOVIRUS (STRAIN
36-65
626-664

AD169)

PUL77_HCMVA
VIRION PROTEIN UL77
HUMAN CYTOMEGALOVIRUS (STRAIN
381-413
565-598

AD169)

PUL78_HCMVA
HYPOTHETICAL PROTEIN UL78
HUMAN CYTOMEGALOVIRUS (STRAIN
262-290
303-341

AD169)

PUL79_HSVSA
HYPOTHETICAL GENE 18 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
158-195

PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
130-159

UGANDA-1102)

PUL87_HSVSA
HYPOTHETICAL GENE 24 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
322-355

PUL88_HCMVA
HYPOTHETICAL PROTEIN UL88
HUMAN CYTOMEGALOVIRUS (STRAIN
309-337

AD169)

PUL88_HSV6U
HYPOTHETICAL PROTEIN 6R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
150-187
238-272

UGANDA-1102)

PUL91_HSVSA
HYPOTHETICAL GENE 30 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
23-53

PUL92_EBV
HYPOTHETICAL PROTEIN BDLF4
EPSTEIN-BARR VIRUS (STRAIN B95-8)
106-144

(HUMAN HERPESVIRUS 4)

PUL92_HSVSA
HYPOTHETICAL GENE 31 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
123-157

PUL93_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN
387-420

AD169)

PUL95_EBV
HYPOTHETICAL PROTEIN BGLF3
EPSTEIN-BARR VIRUS (STRAIN B95-8)
111-145

(HUMAN HERPESVIRUS 4)

PULB8_HCMVA
HYPOTHETICAL PROTEIN UL118
HUMAN CYTOMEGALOVIRUS (STRAIN
102-130
152-181

AD169

PULC1_HCMVA
HYPOTHETICAL PROTEIN UL121
HUMAN CYTOMEGALOVIRUS (STRAIN
129-165

AD169)

PULC8_HCMVA
HYPOTHETICAL PROTEIN UL128
HUMAN CYTOMEGALOVIRUS (STRAIN
64-96

AD169)

PULC9_HCMVA
HYPOTHETICAL PROTEIN UL129
HUMAN CYTOMEGALOVIRUS (STRAIN
66-99

AD169)

PULD0_HCMVA
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN
81-114

AD169)

PUNG_EBV
URACIL-DNA GLYCOSYLASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
159-189

(HUMAN HERPESVIRUS 4)

PUNG_VACCC
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
82-117

PUNG_VACCV
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN WR)
82-117

PUNG_VARV
URACIL-DNA GLYCOSYLASE
VARIOLA VIRUS
82-117

PUS02_HCMVA
HYPOTHETICAL PROTEIN HQLF2
HUMAN CYTOMEGALOVIRUS (STRAIN
43-73

AD169)

PUS07_HCMVA
HYPOTHETICAL PROTEIN HXLF5
HUMAN CYTOMEGALOVIRUS (STRAIN
153-190

AD169)

PUS09_HCMVA
HYPOTHETICAL PROTEIN HXLF3
HUMAN CYTOMEGALOVIRUS (STRAIN
179-213

AD169)

PUS10_HCMVA
HYPOTHETICAL PROTEIN HXLF2
HUMAN CYTOMEGALOVIRUS (STRAIN
137-170

AD169)

PUS12_HCMVA
HYPOTHETICAL PROTEIN HVLF6
HUMAN CYTOMEGALOVIRUS (STRAIN
29-67
113-142

AD169)

PUS13_HCMVA
HYPOTHETICAL PROTEIN HVLF5
HUMAN CYTOMEGALOVIRUS (STRAIN
11-45

AD169)

PUS15_HCMVA
HYPOTHETICAL PROTEIN HVLF3
HUMAN CYTOMEGALOVIRUS (STRAIN
343-375

AD169)

PUS16_HCMVA
HYPOTHETICAL PROTEIN HVLF2
HUMAN CYTOMEGALOVIRUS (STRAIN
151-188
243-274

AD169)

PUS18_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN
185-222

AD169)

PUS22_HCMVA
EARLY NUCLEAR PROTEIN HWLF1
HUMAN CYTOMEGALOVIRUS (STRAIN
270-299

AD169)

PUS26_HCMVA
HYPOTHETICAL PROTEIN HHLF5
HUMAN CYTOMEGALOVIRUS (STRAIN
132-164

AD169)

PUS27_HCMVA
G-PROTEIN COUPLED RECEPTOR
HUMAN CYTOMEGALOVIRUS (STRAIN
247-285

HOMOLOG US27
AD169)

PUS29_HCMVA
HYPOTHETICAL PROTEIN HHRF4
HUMAN CYTOMEGALOVIRUS (STRAIN
246-276

AD169)

PUS30_HCMVA
HYPOTHETICAL PROTEIN HHRF5
HUMAN CYTOMEGALOVIRUS (STRAIN
208-246

AD169)

PV125_AMVLE
125 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN
263-292

425/ISOLATE LEIDEN

PV13K_TRVPL
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PLB)
24-62

PV143_NPVAC
HELICASE
AUTOGRAPHA CALIFORNICA NUCLEAR
312-342

POLYHEDROSIS VIRUS

PV17K_BSMV
17 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
40-75

PV1A_CMVFN
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
674-709

(CMV)

PV270_ASFB7
L270 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN
103-135

BA71V) (ASFV)

PV2A_BBMV
2A PROTEIN
BROAD BEAN MOTTLE VIRUS
636-673

PV2A_CCMV
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
325-363
639-673
762-799

(CCMV)

PV2A_CMVFN
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
208-243
292-320

(CMV)

PV2A_CMVQ
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
205-240

(CMV)

PV2A_TAV
2A PROTEIN
TOMATO ASPERMY VIRUS (TAV)
297-325

PV30K_TRVTC
29.1 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
102-133

PV3A_BBMV
3A PROTEIN
BROAD BEAN MOTTLE VIRUS
155-187

PV3A_BMV
3A PROTEIN
BROME MOSAIC VIRUS (BMV)
159-189

PV3A_CCMV
3A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
160-188

(CCMV)

PV3A_IBVB
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
5-43

(STRAIN BEAUDETTE) (IBV)

PV3A_IBVM
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
5-42

(STRAIN M41) (IBV)

PV3A_IBVP3
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
5-42

PV3A_IBVU5
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
5-42

(STRAIN UK/183/66) (IBV)

PV51K_ACLSV
50.8 KD PROTEIN
APPLE CHLOROTIC LEAF SPOT VIRUS
70-106

(ACLSV)

PV51K_BWYVF
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE
366-398

FL-1) (BWYV)

PV51K_BWYVG
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE
366-398

GB1) (BWYV)

PV56K_PLRV1
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
360-392

(PLRV)

PV56K_PLRVW
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN
360-392

WAGENINGEN) (PLRV)

PV58K_BSMV
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
320-353

PV70K_PLRV1
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
220-257

(PLRV)

PV70K_PLRVW
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN
220-257

WAGENINGEN) (PLRV)

PV90K_AMVLE
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN
103-131

425/ISOLATE LEIDEN)

PVA04_VACCC
PROTEIN A4
VACCINIA VIRUS (STRAIN COPENHAGEN)
217-251

PVA04_VACCV
PROTEIN A4
VACCINIA VIRUS (STRAIN WR)
217-251

PVA04_VARV
PROTEIN A4
VARIOLA VIRUS
207-241

PVA11_VACCC
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
95-132

PVA11_VARV
PROTEIN A11
VARIOLA VIRUS
96-133

PVA18_VACCC
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
390-421

PVA18_VACCV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN WR)
390-421

PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
390-421

PVA23_VACCC
PROTEIN A23
VACCINIA VIRUS (STRAIN COPENHAGEN)
81-111
170-203

PVA23_VARV
PROTEIN A23
VARIOLA VIRUS
81-111
170-203

PVA31_VACCC
PROTEIN A31
VACCINIA VIRUS (STRAIN COPENHAGEN)
42-76

PVA31_VACCV
PROTEIN A31
VACCINIA VIRUS (STRAIN WR)
42-76

PVA31_VARV
PROTEIN A31
VARIOLA VIRUS
42-76

PVA32_VACCV
PROTEIN A32
VACCINIA VIRUS (STRAIN WR), AND
48-79

VACCINIA VIRUS (STRAIN COPENHAG

PVA32_VARV
PROTEIN A32
VARIOLA VIRUS
18-49

PVA40_VACCC
PROTEIN A40
VACCINIA VIRUS (STRAIN COPENHAGEN)
4-37

PVA43_VACCC
PROTEIN A43
VACCINIA VIRUS (STRAIN COPENHAGEN)
94-129

PVA43_VACCV
PROTEIN A43
VACCINIA VIRUS (STRAIN WR)
94-129

PVA43_VARV
PROTEIN A43
VARIOLA VIRUS
95-130

PVA51_VACCC
PROTEIN A51
VACCINIA VIRUS (STRAIN COPENHAGEN)
109-143

PVA51_VACCV
PROTEIN A51
VACCINIA VIRUS (STRAIN WR)
109-143

PVAL1_BCV
AL1 PROTEIN
BEET CURLY TOP VIRUS (BCTV)
89-118

PVAL1_BGMV
AL1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
89-118

PVAL1_CLVK
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST
88-117

KENYAN 844

PVAL1_CLVN
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
88-117

NIGERIAN)

PVAL1_PYMVV
AL1 PROTEIN
POTATO YELLOW MOSAIC VIRUS (ISOLATE
89-118

VENEZUELA)

PVAL1_TGMV
AL1 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS (TGMV)
90-119

PVAL1_TYLCM
AL1 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
89-118

(STRAIN MARMANDE) (TYLCV)

PLAL1_TYLCV
AL1 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
87-116

(TYLCV)

PVAL3_BCTV
AL3 PROTEIN
BEET CURLY TOP VIRUS (BCTV)
82-115

PVAL3_CLVK
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST
77-113

KENYAN 844)

PVAL3_CLVN
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
77-113

NIGERIAN)

PVAL3_TYLCM
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
78-116

(STRAIN MARMANDE) (TYLCV)

PVAL3_TYLCV
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
77-113

(TYLCV

PVAT_CAMVC
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
81-116

CM-1841) (CAMV)

PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
102-130

D/H) (CAMV

PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
81-116

BBC) (CAMV)

PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
81-116

NY8153) (CAMV)

PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
81-116

PV147) (CAMV)

PVAT_CAMVS
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
81-116

STRASBOURG) (CAMV)

PVB04_VACCC
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)
124-156
489-525

PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
124-156
489-525

PVB04_VARV
PROTEIN B4
VARIOLA VIRUS
489-525

PVB16_COWPX
INTERLEUKIN-1 BINDING PROTEIN
COWPOX VIRUS (CPV)
89-126

PRECURSOR

PVB16_VACCV
INTERLEUKIN-1 BINDING PROTEIN
VACCINIA VIRUS (STRAIN WR)
89-126

PRECURSOR

PVB19_VACCC
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
213-244

PVB19_VACCD
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN DAIREN 1)
211-242

PVB19_VACCV
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN WR)
211-242

PVB19_VARV
SURFACE ANTIGEN S PRECURSOR
VARIOLA VIRUS
211-242

PVBR1_BGMV
BR1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
166-198

PVC03_SFVKA
G-PROTEIN COUPLED RECEPTOR
SHOPE FIBROMA VIRUS (STRAIN
98-130

HOMOLOG C3
KASZA) (SFV)

PVC04_VACCC
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
109-139
182-216

PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
109-139
183-215

PVC04_VARV
PROTEIN C4
VARIOLA VIRUS
109-139

PVC06_VACCC
PROTEIN C6
VACCINIA VIRUS (STRAIN COPENHAGEN)
36-67

PVC06_VACCV
PROTEIN C6
VACCINIA VIRUS (STRAIN WR)
36-67

PVC06_VARV
PROTEIN C6
VARIOLA VIRUS
36-67

PVC07_SFVKA
HYPOTHETICAL PROTEIN C7
SHOPE FIBROMA VIRUS (STRAIN
60-97

KASZA) (SFV)

PVC09_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
573-610

PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
573-610

PVC10_SFVKA
HYPOTHETICAL PROTEIN C10
SHOPE FIBROMA VIRUS (STRAIN
85-121

KASZA) (SFV)

PVC10_VACCC
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
121-158

PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
121-158

PVC10_VARV
PROTEIN C10
VARIOLA VIRUS
121-158

PVC21_VACCC
PROTEIN C21/B27
VACCINIA VIRUS (STRAIN COPENHAGEN)
3-34

PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
148-183
200-230

(HUMAN HERPESVIRUS 4)

PVCAP_HCMVA
MAJOR CAPSID PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN
43-78
128-161
258-286

AD169)

PVCAP_HSVI1
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
19-49

PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
124-161
666-696
841-869

UGANDA-1102)

PVCAP_HSVEB
MAJOR CAPSID PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
17-54
198-232
272-301

AB4P) (EHV-1)

PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
144-179
196-226
734-769
1062-1096

PVCAP_PRVIS
MAJOR CAPSID PROTEIN
PSEUDORABIES VIRUS (STRAIN INDIANA S)
189-221
260-289

(PRV)

PVCAP_VZVD
MAJOR CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
31-68

DUMAS) (VZV)

PVCOM_ADE02
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 2
86-115

PVCOM_ADE05
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 5
85-114

PVD03_VACCC
PROTEIN D3
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-50
146-182

PVD03_VACCV
PROTEIN D3
VACCINIA VIRUS (STRAIN WR)
12-50
146-182

PVD03_VARV
PROTEIN D3
VARIOLA VIRUS
12-50
146-182

PVD05_FOWP1
92.6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
315-352

PVD05_VACCC
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
320-348

PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
320-348

PVD05_VARV
PROTEIN D5
VARIOLA VIRUS
320-348

PVD10_FOWP1
PROTEIN D10
FOWLPOX VIRUS (STRAIN FP-1)
114-143

PVE05_VACCD
PROTEIN E5
VACCINIA VIRUS (STRAIN DAIREN 1)
31-60

PVE06_VACCC
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
226-260
430-458
511-540

PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
226-260
430-458
511-540

PVE06_VARV
PROTEIN E6
VARIOLA VIRUS
430-458
511-540

PVE10_VACCC
PROTEIN E10
VACCINIA VIRUS (STRAIN COPENHAGEN)
3-41

PVE10_VACCV
PROTEIN E10
VACCINIA VIRUS (STRAIN WR)
3-41

PVE10_VARV
PROTEIN E10
VARIOLA VIRUS
3-41

PVE12_HPV16
PROBABLE E1 PROTEIN 2
HUMAN PAPILLOMAVIRUS TYPE 16
102-131

PVE18_NPVAC
EARLY 18.5 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
45-77

POLYHEDROSIS VIRUS (ACMNPV)

PVE1_HPV05
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
4-35

PVE1_HPV11
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
258-291

PVE1_HPV13
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
255-288

PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
238-267
519-547

PVE1_HPV35
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
230-263

PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
242-271

PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
105-138
193-231

PVE1_HPV58
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
238-267

PVE1_HPV5B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
6-35

PVE1_HPV6B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
258-291

PVE1_PAPVD
E1 PROTEIN
DEER PAPILLOMAVIRUS
163-201

PVE1_PCPV1
E1 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS
257-290

TYPE 1

PVE26_NPVAC
EARLY 25.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
118-150

POLYHEDROSIS VIRUS (ACMNPV)

PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
151-182

PVE2_RHPV1
E2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1 (RHPV 1)
117-147

PVE41_NPVAC
EARLY 40.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
14-52

POLYHEDROSIS VIRUS (ACMNPV)

PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
19-56

PVE5A_HPV6B
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
19-56

PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6C
19-56

PVE5_HPV13
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
19-56

PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
89-118

PVE5_PCPV1
PROBABLE E5 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS
21-58

TYPE 1

PVE5_RHPV1
PROBABLE E5 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1 (RHPV 1)
109-140

PVE6_HPV1A
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
91-128

PVE7_HPV05
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
55-90

PVE7_HPV08
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
55-90

PVE7_HPV11
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
47-83

PVE7_HPV16
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
47-81

PVE7_HPV1A
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
45-77

PVE7_HPV31
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
47-83

PVE7_HPV33
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
47-83

PVE7_HPV35
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
48-84

PVE7_HPV41
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
63-94

PVE7_HPV47
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
55-90

PVE7_HPV51
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
61-94

PVE7_HPV58
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
48-84

PVE7_HPV5B
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
55-90

PVE7_HPV6B
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
47-83

PVE7_PAPVD
E7 PROTEIN
DEEP PAPILLOMAVIRUS
48-86

PVE7_PAPVE
E7 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS (EEPV)
60-93

PVE94_NPVAC
EARLY 94 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
123-157
650-678

POLYHEDROSIS VIRUS (ACMNPV)

PVEF_GVTN
VIRAL ENHANCING FACTOR
TRICHOPLUSIA N1 GRANULOSIS VIRUS
154-182

(TNGV)

PVENV_BEV
ENVELOPE PROTEIN
BERNE VIRUS (BEV)
16-51
87-117

PVENV_DHV11
ENVELOPE GLYCOPROTEIN PRECURSOR
DHORI VIRUS (STRAIN INDIAN/1313/61)
297-335

(DHO)

PVENV_MCV1
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS
203-236

SUBTYPE 1 (MCVI)

PVENV_MCV2
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS
203-236

SUBTYPE 2 (MCVII)

PVENV_VACCC
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
208-241

PVENV_VACCI
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN 1HD-J)
208-241

PVENV_VACCP
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN L-IVP)
208-241

PVENV_VACCV
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN WR)
208-241

PVENV_VARV
MAJOR ENVELOPE PROTEIN
VARIOLA VIRUS
155-187
208-241

PVF03_VACCC
PROTEIN F3
VACCINIA VIRUS (STRAIN COPENHAGEN)
2-40
61-93

PVF03_VACCV
PROTEIN F3
VACCINIA VIRUS (STRAIN WR)
2-40
61-93

PVFP1_FOWPV
PROTEIN FP1
FOWLPOX VIRUS
297-330

PVFP4_FOWPV
PROTEIN FP4
FOWLPOX VIRUS
237-267

PVFP7_CAPVK
PROTEIN F7
CAPRIPOX VIRUS (STRAIN KS-1)
89-118

PVFUS_VACCC
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
28-61

PVFUS_VACCV
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
28-61

PVFUS_VARV
14 KD FUSION PROTEIN
VARIOLA VIRUS
28-61

PVG01_HSV11
HYPOTHETICAL GENE 1 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
317-346

CATFISH VIRUS) (CCV)

PVG02_HSVEB
HYPOTHETICAL GENE 2 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
163-196

AB4P) (EHV-1)

PVG02_VACCV
ISATIN-BETA-THIOSEMICARBAZONE
VACCINIA VIRUS (STRAIN WR), AND
92-120

DEPENDENT PROTEI
VACCINIA VIRUS (STRAIN COPENHAGE

PVG02_VARV
ISATIN-BETA-THIOSEMICARBAZONE
VARIOLA VIRUS
92-120

DEPENDENT PROTEI

PVG03_HSVI1
HYPOTHETICAL GENE 3
ICTALURID HERPESVIRUS 1 (CHANNEL
108-136

PROTEIN
CATFISH VIRUS) (CCV)

PVG06_HSVI1
HYPOTHETICAL GENE 6 MEMBRANE
ICTALURID HERPESVIRUS 1 (CHANNEL
54-83

PROTEIN
CATFISH VIRUS) (CCV)

PVG06_VACCC
PROTEIN G6
VACCINIA VIRUS (STRAIN COPENHAGEN)
99-136

PVG06_VARV
PROTEIN G6
VARIOLA VIRUS
99-136

PVG07_VACCC
PROTEIN G7
VACCINIA VIRUS (STRAIN COPENHAGEN)
113-145

PVG07_VARV
PROTEIN G7
VARIOLA VIRUS
113-145

PVG09_VACCC
PROTEIN F1
VACCINIA VIRUS (STRAIN COPENHAGEN)
303-338

PVG09_VACCV
PROTEIN F1
VACCINIA VIRUS (STRAIN WR)
266-301

PVG09_VARV
PROTEIN F1
VARIOLA VIRUS
303-338

PVG11_HSV11
HYPOTHETICAL GENE 11 ZINC-BINDING
ICTALURID HERPESVIRUS 1 (CHANNEL
150-183

PROTEIN
CATFISH VIRUS) (CCV)

PVG12_HSV11
HYPOTHETICAL GENE 12 ZINC-BINDING
ICTALURID HERPESVIRUS 1 (CHANNEL
206-243

PROTEIN
CATFISH VIRUS) (CCV)

PVG12_HSVSA
HYPOTHETICAL GENE 12 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
68-106

PVG1_SPVIR
CAPSID PROTEIN
SPIROPLASMA VIRUS SPVI-R8A2 B
254-292
303-337
414-452

PVG22_HSV11
HYPOTHETICAL GENE 22 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
300-337
647-678

CATFISH VIRUS) (CCV)

PVG23_HSV11
HYPOTHETICAL GENE 23 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
70-108

CATFISH VIRUS) (CCV)

PVG26_HSV11
HYPOTHETICAL GENE 26 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
94-125

CATFISH VIRUS) (CCV)

PVG27_HSVSA
HYPOTHETICAL GENE 27 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
36-74

PVG28_HSV11
HYPOTHETICAL GENE 28 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
491-521

CATFISH VIRUS) (CCV)

PVG2R_AMEPV
HYPOTHETICAL G2R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
180-217

(AMEPV)

PVG2_SPV4
GENE 2 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
209-244

PVG35_HSV11
HYPOTHETICAL GENE 35 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
15-46
190-226

CATFISH VIRUS) (CCV)

PVG36_HSVSA
POSSIBLE TYROSINE-PROTEIN KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
151-185

PVG39_HSV11
HYPOTHETICAL GENE 39 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
543-577
648-682

CATFISH VIRUS) (CCV)

PVG40_HSVSA
HYPOTHETICAL GENE 40 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
187-216

PVG41_HSV11
HYPOTHETICAL GENE 41 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
11-45
202-233

CATFISH VIRUS) (CCV)

PVG42_HSV11
HYPOTHETICAL GENE 42 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
91-125

CATFISH VIRUS) (CCV)

PVG43_HSV11
HYPOTHETICAL GENE 43 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
109-140
157-185

CATFISH VIRUS) (CCV)

PVG46_HSV11
PROBABLE MAJOR GLYCOPROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
888-925

CATFISH VIRUS) (CCV)

PVG48_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
329-357

PVG50_HSVSA
PROBABLE TRANSCRIPTION ACTIVAOR
HERPESVIRUS SAIMIRI (STRAIN 11)
113-141

EDRF1

PVG51_HSV11
HYPOTHETICAL GENE 51
ICTALURID HERPESVIRUS 1 (CHANNEL
29-64
84-120

MEMBRANE PROTEIN
CATFISH VIRUS) (CCV)

PVG52_HSV11
HYPOTHETICAL GENE 52 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
96-134

CATFISH VIRUS) (CCV)

PVG55_HSV11
HYPOTHETICAL GENE 55 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
100-129

CATFISH VIRUS) (CCV)

PVG56_HSV11
HYPOTHETICAL GENE 56 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
364-396
631-667
1091-1126

CATFISH VIRUS) (CCV)

PVG58_HSV11
HYPOTHETICAL GENE 58 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
342-375
480-508

CATFISH VIRUS) (CCV)

PVG58_HSVSA
GENE 58 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
25-60
195-233

PVG59_HSV11
HYPOTHETICAL GENE 59
ICTALURID HERPESVIRUS 1 (CHANNEL
82-118

MEMBRANE PROTEIN
CATFISH VIRUS) (CCV)

PVG61_HSV11
HYPOTHETICAL GENE 61 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
76-109

CATFISH VIRUS) (CCV)

PVG64_HSV11
HYPOTHETICAL GENE 64 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
55-89
363-401
420-452

CATFISH VIRUS) (CCV)

PVG65_HSV11
HYPOTHETICAL GENE 65 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
801-836
1146-1174
1290-1326

CATFISH VIRUS) (CCV)

PVG67_HSV11
HYPOTHETICAL GENE 67 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
1150-1185

CATFISH VIRUS) (CCV)

PVG6_SPV1R
GENE 6 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
60-89

PVG71_HSVSA
HYPOTHETICAL GENE 71 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
128-158

PVG72_HSV11
HYPOTHETICAL GENE 72 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
445-478
720-751
1158-1189
1252-1285

CATFISH VIRUS) (CCV)

PVG75_HSV11
HYPOTHETICAL GENE 75 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
263-291
387-422

CATFISH VIRUS) (CCV)

PVG76_HSV11
HYPOTHETICAL GENE 76 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
187-221

CATFISH VIRUS) (CCV)

PVG7_SPVIR
GENE 7 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
18-46

PVGF1_IBVB
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
1719-1747
1856-1891
2108-2146
3601-3633

(STRAIN BEAUDETTE) (IBV)

PVGH3_HCMVA
GLYCOPROTEIN H301 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN
80-115
157-185

AD169)

PVGL2_CVBF
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
1259-1294

PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN L9)
651-681

PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
1259-1294

PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
1259-1294

PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
1259-1294

PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN VACCINE)
1259-1294

PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR
HUMAN CORONAVIRUS (STRAIN 229E)
1053-1088

PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN WILD
1267-1304

TYPE 4) (MHV-4)

PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN A59
1215-1252

PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN
1267-1304

JHMV/VARIANT CL-2)

PVGL2_CVMJH
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN JHM)
1126-1163

PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
632-665
736-764
1328-1363

GASTROENTERITIS CORONAVIRUS

PVGL2_CVPMI
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
632-665
736-764
1328-1363

GASTROENTERITIS CORONAVIRUS

PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
630-663
734-762
1326-1361

GASTROENTERITIS CORONAVIRUS

PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
630-663
734-762
1326-1361

GASTROENTERITIS CORONAVIRUS

PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
512-540
1104-1139

PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
408-441
512-540
1104-1139

(STRAIN RM4) (PRCV)

PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
630-663
734-762
1326-1361

GASTROENTERITIS CORONAVIRUS (STRAIN

NEB7)

PVGL2_FIPV
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONTIS VIRUS
635-668
739-767
1331-1366

(STRAIN 79-1146) (FIPV)

PVGL2_IBVB
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
153-188

(STRAIN BEAUDETTE) (IBV)

PVGLB_HCMVA
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN
116-147
706-743

AD169)

PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN
116-147
707-744

TOWNE)

PVGLB_HSV6U
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
72-110

UGANDA-1102)

PVGLB_HSVB1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
254-288

PVGLB_HSVB2
GLYCOPROTEIN B-1 PRECURSOR
BOVINE HERPESVIRUS 2 (STRAIN BMV)
745-774

(BOVINE MAMMILLITIS VIRUS

PVGLB_HSVBC
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS 1 (STRAIN COOPER
253-287

PVGLB_ILTV6
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS
442-472

(STRAIN 632) (ILIV)

PVGLB_ILTVS
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS
452-482

(STRAIN SA-2) (ILTV)

PVGLB_ILTVT
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS
452-482

(STRAIN THORNE V882) (ILTV)

PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN
135-163
738-776

SMITH)

PVGLC_HSV11
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
467-500

PVGLC_HSVIK
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS
467-500

(TYPE 1/STRAIN KOS)

PVGLC_HSV2
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
435-465

PVGLC_HSV23
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS
436-466

(TYPE 2/STRAIN 333)

PVGLC_HSVBC
GLYCOPROTEIN GH1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN
475-507

COOPER)

PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN
351-388
513-548

DUMAS) (VZV)

PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN
351-388
513-548

SCOTT) (VZV)

PVGLD_HSVEA
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN
340-370

AB1) (EHV-1)

PVGLD_HSVEB
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
41-70
390-420

PVGLD_HSVEK
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
41-70
390-420

PVGLE_HSVE4
GLYCOPROTEIN E
EQUINE HERPESVIRUS TYPE 4
95-125

PVGLE_HSVEB
GLYCOPROTEIN E PRECURSOR
EQUINE HERPESVIRUS TYPE 1
63-100
390-420

PVGLE_HSVEL
GLYCOPROTEIN E PRECURSOR
EQUINE HERPESVIRUS TYPE 1
63-100
392-422

PVGLE_PRVR1
GLYCOPROTEIN G1 PRECURSOR
PSEUDORABIES VIRUS (STRAIN RICE) (PRV)
332-369

PVGLE_BRSVA
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
265-301
482-511

(STRAIN A51908) (BRS)

PVGLF_BRSVC
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
484-513

(STRAIN COPENHAGEN) (BRS)

PVGLF_BRSVR
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
484-513

(STRAIN RB94) (BRS)

PVGLF_CDYO
FUSION GLYCOPROTEIN PRECURSOR
CANINE DISTEMPER VIRUS (STRAIN
562-596

ONDERSTEPOORT) (CDV)

PVGLF_HRSV1
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
484-513

PVGLF_HRSVA
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
484-513

(STRAIN A2)

PVGLF_HRSVL
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
484-513

(SUBGROUP A/STRAIN LONG)

PVGLF_HRSVR
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
484-513

(STRAIN RSS-2)

PVGLF_MEASE
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN EDMONSTON)
224-256
451-484

PVGLF_MEAS1
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN IP-3-CA
227-259
454-487

PVGLF_MEASY
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN YAMAGATA-1)
224-256
451-484

PVGLF_MUMP1
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL-1)
5-38
446-474

PVGLF_MUMPM
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN MIYAHARA
446-474

VACCINE)

PVGLF_MUMPR
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN RW)
446-474

PVGLF_MUMPS
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL)
5-38
446-474

PVGLF_NDV1
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN
132-165

ITALIEN/45) (NDV)

PVGLF_NDVL
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN
132-165

LAS/46) (NDV)

PVGLF_PHODV
FUSION GLYCOPROTEIN PRECURSOR
PHOCINE DISTEMPER VIRUS
531-565

PVGLF_PHHC
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 1 VIRUS
456-484

(STRAIN C39)

PVGLF_P13B
FUSION GLYCOPROTEIN PRECURSOR
BOVINE PARAINFLUENZA 3 VIRUS
453-481

PVGLF_P13H4
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 3 VIRUS
453-481

(STRAIN NIH 47885

PVGLF_RINDK
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN KABETTE O)
220-252
447-480

(RDV)

PVGLF_RINDL
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN L) (RDV)
220-252
447-480

PVGLF_SEND5
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
460-488

PVGLF_SENDF
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN FUSHIMI)
460-488

PVGLF_SENDH
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HARRIS)
460-488

PVGLF_SENDJ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HVJ)
460-488

PVGLF_SENDZ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z)
460-488

PVGLF_SV5
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 5 (STRAIN W3) (SV5)
446-474

PVGLF_TRTV
FUSION GLYCOPROTEIN PRECURSOR
TURKEY RHINOTRACHEITIS VIRUS (TRTV)
452-481

PVGLG_HSVEB
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 1
327-364

(STRAIN AB4P) (EHV-1)

PVGLG_SYNV
SPIKE GLYCOPROTEIN PRECURSOR
SONCHUS YELLOW NET VIRUS (SYNV)
524-553

PVGLG_VSVIG
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
450-488

(SEROTYPE INDIANA/STRAIN GLASGOW)

PVGLG_VSVJO
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
457-492

(SEROTYPE NEW JERSEY/STRAIN OGDEN)

PVGLG_VSVO
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
450-488

(STRAIN ORSAY)

PVGLG_VSVSJ
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
450-488

(STRAIN SAN JUAN)

PVGLH_HCMVA
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS
691-719

(STRAIN AD169)

PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS
690-718

(STRAIN TOWNE)

PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
215-247
640-677

PVGLH_HSVE4
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 4
814-850

PVGLH_HSVEB
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 1
807-843

PVGLI_HCMVA
IMMEDIATE EARLY GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS
158-194

PRECURSOR
(STRAIN AD169)

PVGLM_BUNGE
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
197-227
438-468
982-1020
1049-1084

PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
190-220

PVGLM_BUNSH
M POLYPROTEIN PRECURSOR
BUNYAVIRUS SNOWSHOE HARE
190-220
344-381

PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
193-228
434-472
823-854

PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
DUGBE VIRUS
244-273
637-672
886-915
935-965
1403-1441

PVGLM_HANTB
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1)
610-641
1081-1119

(KOREAN HEMORRHAGIC FEVER VIRUS)

PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
188-222
612-643
1082-1120

PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
188-222
612-643
1083-1121

PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN 76-118)
188-222
612-643
1083-1121

PVGLM_INSV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS (INSV)
269-307
1028-1062

PVGLM_PHV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS (PHV)
616-649
1088-1121

PVGLM_PTPV
M POLYPROTEIN PRECURSOR
PUNTA TORO PHLEBOVIRUS
949-982
1275-1309

PVGLM_PUUMH
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN HALLNAS B1)
620-653
1092-1125

PVGLM_PUUMS
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN SOTKAMO)
620-653
1092-1125

PVGLM_RVFV
M POLYPROTEIN PRECURSOR
RIFT VALLEY FEVER VIRUS (RVFV)
620-650
830-863

PVGLM_RVFVZ
M POLYPROTEIN PRECURSOR
RIFT VALLEY FEVER VIRUS
620-650
830-863
1156-1185

(STRAIN ZH-648 M12) (RVFV)

PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
610-641
1081-1119

PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R22)
605-641
1082-1120

PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11)
610-641
1081-1119

(SAPPORO RAT VIRUS)

PVGLM_UUK
M POLYPROTEIN PRECURSOR
UUKUNIEMI VIRUS (UUK)
431-468
966-995

PVGLP_BEY
PEPLOMER GLYCOPROTEIN PRECURSOR
BERNE VIRUS (BEV)
1491-1526

PVGLY_JUNIN
GLYCOPROTEIN POLYPROTEIN PRECURSOR
JUNIN ARENAVIRUS
12-45

PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN GA391)
237-265

PVGLY_LASSJ
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN JOSIAH)
238-266

PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
PICHINDE ARENAVIRUS
12-50

PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS
12-50

PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V5
12-50
89-124

PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V7)
12-50
89-124

PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN TRVL 11598)
12-50
89-124

PVGNB_CPMV
GENOME POLYPROTEIN B
COWPEA MOSAIC VIRUS (CPMV)
1527-1555

PVGNM_CPMV
GENOME POLYPROTEIN M
COWPEA MOSAIC VIRUS (CPMV)
209-242
741-771

PVGNM_CPSMV
GENOME POLYPROTEIN M
COWPEA SEVERE MOSAIC VIRUS
50-86
479-515

(STRAIN DG)

PVGNM_RCMV
GENOME POLYPROTEIN M
RED CLOVER MOTTLE VIRUS (RCMV)
766-799

PVGP2_EBV
PROBABLE MEMBRANE ANTIGEN GP220
EPSTEIN-BARR VIRUS (STRAIN B95-8)
78-111

(HUMAN HERPESVIRUS 4)

PVGP3_EBV
ENVELOPE GLYCOPROTEIN GP340
EPSTEIN-BARR VIRUS (STRAIN B95-8)
78-111

(HUMAN HERPESVIRUS 4)

PVH02_VACCC
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-89

PVH02_VACCV
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN WR)
54-89

PVH02_VARV
LATE PROTEIN H2
VARIOLA VIRUS

PVH05_VACCC
PROTEIN H5
VACCINIA VIRUS (STRAIN COPENHAGEN)
115-149

PVH05_VACCV
PROTEIN H5
VACCINIA VIRUS (STRAIN WR)
115-149

PVH05_VARV
PROTEIN H5
VARIOLA VIRUS
133-167

PVHEL_LSV
PROBABLE HELICASE
LILY SYMPTOMLESS VIRUS (LSV)
107-143

PVI01_VACCC
PROTEIN I1
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-82

PVI01_VARV
PROTEIN I1
VARIOLA VIRUS
54-82

PVI06_VACCV
PROTEIN I6
VACCINIA VIRUS (STRAIN WR)
55-88

PVI06_VARV
PROTEIN I6
VARIOLA VIRUS
55-88

PVI08_VACCC
PUTATIVE RNA HELICASE I8
VACCINIA VIRUS (STRAIN COPENHAGEN)
591-624

PVI08_VACCV
PUTATIVE RNA HELICASE I8
VACCINIA VIRUS (STRAIN WR)
591-624

PVI08_VARV
PUTATIVE RNA HELICASE I8
VARIOLA VIRUS
591-624

PVIE1_HCMVA
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS
243-271

(STRAIN AD169)

PV1E1_HCMVT
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS
243-271

(STRAIN TOWNE)

PVIF_BIV06
VIRION INFECTIVITY FACTOR
BOVINE IMMUNODEFICIENCY VIRUS
42-78

(ISOLATE 106) (BIV)

PVIF_BIV27
VIRION INFECTIVITY FACTOR
BOVINE IMMUNODEFICIENCY VIRUS
42-78

(ISOLATE 127) (BIV)

PVIF_SIVGB
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
46-78

(ISOLATE GB1)

PVIF_SIVMK
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
82-111

(K6W ISOLATE) (SIV-MAC)

PVIMP_EBV
PROBABLE INTEGRAL MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
125-159

PROTEIN BBRF3
(HUMAN HERPESVIRUS 4)

PVIMP_HCMVA
PROBABLE INTEGRAL MEMBRANE PROTEIN
HUMAN CYTOMEGALOVIRUS
68-100

(STRAIN AD169

PVIMP_HSV11
PROBABLE INTEGRAL MEMBRANE PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
83-114
136-171
250-282

PVIMP_HSVEB
PROBABLE INTEGRAL MEMBRANE PROTEIN
EQUINE HERPESVIRUS TYPE 1
24-56
93-127
145-180
332-361

(STRAIN AB4P) (EHV-1)

PVIMP_HSVSA
INTEGRAL MEMBRANE PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
76-111

PVINT_SSV1
PROBABLE INTEGRASE
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
253-291

PVJ05_VACCC
PROTEIN J5
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-85

PVJ05_VACCV
PROTEIN J5
VACCINIA VIRUS (STRAIN WR)
54-85

PVJ05_VARV
PROTEIN J5
VARIOLA VIRUS
54-85

PVK04_VACCC
PROTEIN K4
VACCINIA VIRUS (STRAIN COPENHAGEN)
87-120

PVK04_VACCV
PROTEIN K4
VACCINIA VIRUS (STRAIN WR)
87-120

PVK05_VACCC
PROTEIN K5
VACCINIA VIRUS (STRAIN COPENHAGEN)
74-103

PVK05_VACCV
PROTEIN K5
VACCINIA VIRUS (STRAIN WR)
87-116

PVL02_VACCC
PROTEIN L2
VACCINIA VIRUS (STRAIN COPENHAGEN)
39-76

PVL02_VACCV
PROTEIN L2
VACCINIA VIRUS (STRAIN WR)
39-76

PVL02_VARV
PROTEIN L2
VARIOLA VIRUS
39-76

PLV03_VACCC
PROTEIN L3
VACCINIA VIRUS (STRAIN COPENHAGEN)
292-322

PVL03_VACCV
PROTEIN L3
VACCINIA VIRUS (STRAIN WR)
292-322

PVL03_VARV
PROTEIN L3
VARIOLA VIRUS
291-321

PVL05_VACCV
PROTEIN L5
VACCINIA VIRUS (STRAIN WR), AND
16-45

VACCINIA VIRUS (STRAIN COPENHAGE

PVL05_VARV
PROTEIN L5
VARIOLA VIRUS
16-45

PVL1_HPVSB
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
373-406

PVL2_CRPVK
PROBABLE L2 PROTEIN
COTTONTAIL RABBIT (SHOPE)
26-57

PAPILLOMAVIRUS (STRAIN KANSAS) (CRPV)

PVL2_HPV05
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
27-57

PVL2_HPV08
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
27-57

PVL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
26-56

PVL2_HPV39
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
29-59
285-313

PVL2_HPV42
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
344-379

PVL2_HPV47
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
26-57

PVL2_HPV51
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
29-59

PVL2_HPV5B
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
27-57

PVL2_HPVME
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE ME180
29-59

PVL2_PCPV1
PROBABLE L2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS
29-59

TYPE 1

PVL96_IRV1
L96 PROTEIN
TIPULA IRIDESCENT VIRUS (TIV) (INSECT
144-177
686-718

IRRIDESCENT VIRUS TYPE 1)

PVM1_REOVD
MINOR VIRION STRUCTURAL PROTEIN MU-2
REOVIRUS (TYPE 3/STRAIN DEARING
280-318
324-361

PVM1_REOVL
MINOR VIRION STRUCTURAL PROTEIN MU-2
REOVIRUS (TYPE 1/STRAIN LANG)
280-318

PVM21_REOVD
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
168-199

MU-1/MU-1C

PVM22_REOVD
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
168-199

MU-1/MU-1C

PVM2_REOVJ
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
168-199

MU-1/MU-1C

PVM2_REOVL
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
168-199

MU-1/MU-1C

PVM3_REOVD
MAJOR NONSTRUCTURAL PROTEIN MU-NS
REOVIRUS (TYPE 3/STRAIN DEARING)
333-364

PVMAT_SV5
MATRIX PROTEIN
SIMIAN VIRUS 5 (STRAIN W3) (SV5)
308-342

PVMAT_TRTV
MATRIX PROTEIN
TURKEY RHINOTRACHEITIS VIRUS (TRTV)
122-150

PVME1_CVBM
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
64-102

PVME1_CVHOC
E1 GLYCOPROTEIN
HUMAN CORONAVIRUS (STRAIN OC43)
64-102

PVME1_CVMA5
E1 GLYCOPROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
65-103

PVME1_CVMJH
E1 GLYCOPROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
65-103

PVME1_CVTKE
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS (TCV)
64-102

PVME1_1BVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
73-101

(STRAIN BEAUDETTE) (IBV)

PVME1_1BVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
73-101

(STRAIN BEAUDETTE M42) (IBV)

PVMEM_EBV
PROBABLE MEMBRANE PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
178-213

(HUMAN HERPESVIRUS 4)

PVMP_CERV
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS (CERV)
93-126

PVMP_SOCMV
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
66-98
273-303

PVMSA_HPBDB
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (BROWN
201-238
269-302

SHANGHAI DUCK ISOLATE S5) (DHBV)

PVMSA_HPBDC
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
194-227
268-301

(STRAIN CHINA) (DHBV)

PVMSA_HPBDU
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (DHBV)
157-190
231-264

PVMSA_HPBDW
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (WHITE
194-228
269-302

SHANGHAI DUCK ISOLATE S31) (DHBV)

PVMSA_HPBGS
MAJOR SURFACE ANTIGEN PRECURSOR
GROUND SQUIRREL HEPATITIS VIRUS
209-243
271-307

(GSHV)

PVMSA_HPBHE
MAJOR SURFACE ANTIGEN PRECURSOR
HERON HEPATITIS B VIRUS
159-195
236-269

PVMSA_HPBV0
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
70-98

PVMSA_HPBV2
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW2)
244-272

PVMSA_HPBV4
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADR4)
244-272

PVMSA_HPBV9
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
244-272

STRAIN 991)

PVMSA_HPBVA
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (STRAIN ALPHA1)
233-261

PVMSA_HPBVD
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE AD)
70-98

PVMSA_HPBVI
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
233-261

STRAIN INDONESIA/PIDW420)

PVMSA_HPBVJ
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
233-261

STRAIN JAPAN/PJDW233)

PVMSA_HPBVL
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (STRAIN LSH/
233-261

CHIMPANZEE ISOLATE)

PVMSA_HPBVN
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADR/
70-98

STRAIN NC-1)

PVMSA_HPBVO
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
233-261

STRAIN OKINAWA/PODW282)

PVMSA_HPBVP
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
244-272

STRAIN PHILIPPINO/PFDW294)

PVMSA_HPBVR
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADR)
244-272

PVMSA_HPBVS
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE AR)
70-98

PVMSA_HPBVW
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW)
233-261

PVMSA_HPBVY
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE AYW)
233-261

PVMSA_HPBVZ
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADYW)
233-261

PVMSA_WHV1
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 1
207-241
269-305

PVMSA_WHV59
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 59
212-246
274-310

PVMSA_WHV7
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 7
212-246
274-310

PVMSA_WHV8
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 8
212-246
274-310

PVMSA_WHV81
PROBABLE MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
212-246
274-305

PRECURSOR
(INFECTIOUS CLONE)

PVMSA_WHVW6
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS W64
125-161

(ISOLATE PWS23)

PVMT2_IAZH
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/
10-42

SWINE/IOWA/15/30)

PVMT8_MYXVL
M-T8 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
5-34
141-170

PVMT9_MYXVL
MT-9 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
246-282

PVN02_VACCC
PROTEIN N2
VACCINIA VIRUS (STRAIN COPENHAGEN)
31-68

PVN02_VACCV
PROTEIN N2
VACCINIA VIRUS (STRAIN WR)
31-68

PVN02_VARV
PROTEIN N2
VARIOLA VIRUS
31-68

PVN34_ROTPC
NONSTRUCTURAL PROTEIN NS34
PORCINE ROTAVIRUS (GROUP C/
336-366

STRAIN COWDEN)

PVNCA_AAV2
DNA REPLICATION PROTEIN
ADENO-ASSOCIATED VIRUS 2 (AAV2)
163-196
365-401

PVNCS_PAVBO
PROBABLE NONCAPSID PROTEIN NS1
BOVINE PARVOVIRUS (BPV)
180-217
346-377
439-471

PVNS1_AHSV4
NONSTRUCTURAL PROTEIN NS1
AFRICAN HORSE SICKNESS VIRUS
351-380

(SEROTYPE 4/STRAIN VACCINE)

PVNS1_IAALA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
114-144

(STRAIN A/ALASKA/6/77)

PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
114-144

(STRAIN A/ANN ARBOR/6/60)

PVNS1_IACHI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
114-144

(STRAIN A/CHILE/1/83)

PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

CHICKEN/GERMANY/N/49)

PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141

CHICKEN/JAPAN/24)

PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

DUCK/ALBERTA/60/76)

PVNS1_IADE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141

DUCK/ENGLAND/1/56)

PVNS1_IADU3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141

DUCK/UKRAINE/1/63)

PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144

FORT MONMOUTH/1/47)

PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144

FORT WARREN/1/50)

PVNS1_IAFPR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FOWL
107-144

PLAGUE VIRUS/ROSTOCK/34)

PVNS1_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144

LENINGRAD/134/57)

PVNS1_IALEN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144

LENINGRAD/54/1)

PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

MALLARD/ALBERTA/88/76)

PVNS1_IAMAN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

MALLARD/NEW YORK/6750/78)

PVNS1_IAMAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

MALLARD/NEW YORK/6874/78)

PVNS1_IAMYN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141

MYNAH/HANEDA-THAI/76)

PVNS1_IAPI0
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

PINTAIL/ALBERTA/119/79)

PVNS1_IAPI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

PINTAIL/ALBERTA/121/79)

PVNS1_IAPI2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

PINTAIL/ALBERTA/268/78)

PVNS1_IAP13
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

PINTAIL/ALBERTA/358/79)

PVNS1_IAPUE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144

PUERTO RICO/8/34)

PVNS1_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

TURKEY/BETHLEHEM-GLILIT/1492-B/82)

PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

TURKEY/CANADA/63)

PVNS1_IATRS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141

TERN/SOUTH AFRICA/61)

PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

TERN/TURKMENIA/18/72)

PVNS1_IAUDO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144

UDORN/307/72)

PVNS1_IAUSS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144

USSR/90/77)

PVNS1_IAZI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144

SWINE/IOWA/15/30

PVNS1_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/PA/79)
266-295

PVNS1_INCAA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA C VIRUS (STRAIN C/
222-255

ANN ARBOR/1/50)

PVNS1_INCCA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA C VIRUS (STRAIN C/
222-255

CALIFORNIA/78)

PVNS2_HRSV1
NONSTRUCTURAL PROTEIN 2
HUMAN RESPIRATORY SYNCYTIAL VIRUS
20-49

(SUBGROUP B/STRAIN 18537)

PVNS2_HRSVA
NONSTRUCTURAL PROTEIN 2
HUMAN RESPIRATORY SYNCYTIAL VIRUS
20-49

(STRAIN A2)

PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/LEE/40
48-77

PVNS2_INBYA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/
48-77

YAMAGATA/1/73)

PVNS4_CVMS
NONSTRUCTURAL PROTEIN 4
MURINE CORONAVIRUS MHV (STRAIN S)
17-45

PVNS4_CVPFS
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE
4-34

GASTROENTERITIS CORONAVIRUS

(STRAIN FS77

PVNS4_CVPPU
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE
4-39

GASTROENTERITIS CORONAVIRUS

(STRAIN PUR

PVNS4_CVPRM
NONSTRUCTURAL PROTEIN 4
PORCINE REPIRATORY CORONAVIRUS
4-39

PVNST_CVMA5
30 KD NONSTRUCTURAL PROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
45-80

PVNST_CVMJH
30 KD NONSTRUCTURAL PROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
49-84

PVNST_INCGL
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/
222-255

GREAT LAKES/1167/54)

PVNST_INCH
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/
222-255

JOHANNESBURG/1/66)

PNVST_INCMI
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/
222-255

MISSISSIPPI/80)

PVNST_INCYA
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/
222-255

YAMAGATA/10/81)

PVNUA_PRVKA
PROBABLE NUCLEAR ANTIGEN
PSEUDORABIES VIRUS
756-784

(STRAIN KAPLAN) (PRV)

PVNUC_DHVH
NUCLEOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/61)
297-331
441-470

(DHO)

PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
354-388

CHICKEN/PENNSYLVANIA/1/83)

PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
354-388

EQUINE/LONDON/1416/73)

PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
354-388

EQUINE/PRAGUE/1/56)

PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
354-388

EQUINE/TENNESSEE/5/86)

PVNUC_MABVM
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
16-46

PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
16-46

PVO01_VACCC
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
511-539
550-581

PVO01_VARV
PROTEIN O1
VARIOLA VIRUS
511-539

PVOR1_NMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS (NMV)
121-150
641-671

PVOR1_PVMR
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN) (PVM)
1667-1703

PVOR1_SMYEA
150 KD PROTEIN
STRAWBERRY MILD YELLOW EDGE-
121-153

ASSOCIATED VIRUS (SMYEAV)

PVP03_HSVSA
PROBABLE MEMBRANE ANTIGEN 3
HERPESVIRUS SAIMIRI (STRAIN 11)
462-493

PVP10_NPVAC
P10 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
4-38

POLYHEDROSIS VIRUS (ACMNPV)

PVP10_NPVOP
P10 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
4-38

POLYHEDROSIS VIRUS (OPMNPV)

PVP10_RBSDV
PROTEIN S10
RICE BLACK STREAKED DWARF VIRUS
260-291

(RBSDV)

PVP19_HSVEB
CAPSID ASSEMBLY AND DNA
EQUINE HERPESVIRUS TYPE 1
239-268
287-325

MATURATION PROTEIN
(STRAIN AB4P) (EHV-1)

PVP23_HCMVA
PROBABLE CAPSID PROTEIN VP23
HUMAN CYTOMEGALOVIRUS
141-172

(STRAIN AD169)

PVP23_HSV6U
PROBABLE CAPSID PROTEIN VP23
HERPES SIMPLEX VIRUS
46-79
206-238

(TYPE 6/STRAIN UGANDA-1102)

PVP23_HSVEB
PROBABLE CAPSID PROTEIN VP23
EQUINE HERPESVIRUS TYPE 1
18-48

(STRAIN AB4P) (EHV-1)

PVP23_VZVD
PROBABLE CAPSID PROTEIN VP23
VARICELLA-ZOSTER VIRUS
224-253

(STRAIN DUMAS) (VZV)

PVP2_AHSV4
OUTER CAPSID PROTEIN VP2
AFRICAN HORSE SICKNESS VIRUS
408-441

(SEROTYPE 4/STRAIN VACCINE)

PVP2_BTV10
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 10/
649-683

ISOLATE USA)

PVP2_BTV11
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 11/
558-586
649-683

ISOLATE USA)

PVP2_BTV17
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 17/
391-424
564-593

ISOLATE USA)

PVP2_BTV1A
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/
654-688

ISOLATE AUSTRALIA)

PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/
654-688

ISOLATE SOUTH AFRICA)

PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE
878-915

VIRUS (SEROTYPE 1) (EHDV-1)

PVP2_ROTBR
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
334-367
522-557

PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
334-367
523-558

PVP2_ROTHW
RNA-BINDING PROTEIN VP2
HUMAN ROTAVIRUS (SEROTYPE 1/
342-377
532-567

STRAIN WA)

PVP2_ROTPC
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS (GROUP C/
514-549
589-617
811-841

STRAIN COWDEN)

PVP2_ROTS1
RNA-BINDING PROTEIN VP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
335-368
523-558

PVP35_VACCC
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN COPENHAGEN)
278-311

PROTEIN P35

PVP35_VACCV
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN WR)
278-311

PROTEIN P35

PVP35_VARV
IMMUNODOMINANT ENVELOPE
VARIOLA VIRUS
279-312

PROTEIN P35

PVP39_NPVOP
MAJOR CAPSID PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
107-141

POLYHEDROSIS VIRUS (OPMNPV)

PVP3_EHDV1
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE
383-412
734-770

VIRUS (SEROTYPE 1) (EHDV-1)

PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
383-412
734-770

PVP3_RDV
MAJOR 114 KD STRUCTURAL PROTEIN
RICE DWARF VIRUS (RDV)
297-330

PVP3_ROTS1
INNER CORE PROTEIN VP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
652-688

PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN B95-8)
429-457

(HUMAN HERPESVIRUS 4)

PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI (STRAIN 11
119-152

PVP40_ILTVT
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS
84-119

(STRAIN THORNE V882) (ILTV)

PVP40_VZVD
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS
485-516

(STRAIN DUMAS) (VZV

PVP47_NPVAC
VIRAL TRANSCRIPTION REGULATOR P47
AUTOGRAPHA CALIFORNICA NUCLEAR
239-270

POLYHEDROSIS VIRUS (ACMNPV)

PVP4A_VACCC
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
553-591

PVP4A_VACCV
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN WR)
553-591

PVP4A_VARV
MAJOR CORE PROTEIN P4A PRECURSOR
VARIOLA VIRUS
554-592

PVP4_ROTG1
OUTER CAPSID PROTEIN VP4
ROTAVIRUS (GROUP B/STRAIN IDIR)
93-122
468-499

PVP4_WTV
NONSTRUCTURAL PROTEIN PNS4
WOUND TUMOR VIRUS (WTV)
278-308
624-659

PVP5_BRD
OUTER CAPSID PROTEIN VP5
BROADHAVEN VIRUS (BRD)
96-133
295-326

PVP5_BTVIA
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/
295-324

ISOLATE AUSTRALIA)

PVP5_BTV1
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/
295-324

ISOLATE SOUTH AFRICA)

PVP5_BTV2A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 2/
295-324

ISOLATE USA)

PVP5_EHDV1
OUTER CAPSID PROTEIN VP5
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
290-325

(SEROTYPE 1) (EHDV-1)

PVP5_WTV
OUTER COAT PROTEIN P5
WOUND TUMOR VIRUS (WTV)
691-719

PVP61_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/
159-187

ISOLATE USA)

PVP62_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/
155-183
210-245

ISOLATE USA)

PVP62_MRDV
PROBABLE NONSTRUCTURAL 36.3 KD
MAIZE ROUGH DWARF VIRUS (MRDV)
25-61
222-257

PROTEIN

PVP64_NPVOP
MAJOR ENVELOPE GLYCOPROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
285-313

PRECURSOR
POLYHEDROSIS VIRUS (OPMNPV)

PVP67_NPVAC
MAJOR ENVELOPE GLYCOPROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
281-316

PRECURSOR
POLYHEDROSIS VIRUS (ACMNPV)

PVP67_NPVGM
MAJOR ENVELOPE GLYCOPROTEIN
GALLERIA MELLONELLA NUCLEAR
198-233

POLYHEDROSIS VIRUS (GMNPV)

PVP6_BTV11
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/
155-183

ISOLATE USA)

PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/
155-183

ISOLATE USA)

PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/
159-187

ISOLATE SOUTH AFRICA)

PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/
131-159

ISOLATE USA)

PVP6_WTV
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (WTV)
180-209

PVP6_WTVNJ
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (STRAIN NJ) (WTV)
180-209

PVP79_NPVAC
79 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
405-442

POLYHEDROSIS VIRUS (ACMNPV)

PVP7_WTV
NONSTRUCTURAL PROTEIN PNS7
WOUND TUMOR VIRUS (WTV)
454-490

PVP87_NPVOP
CAPSID PROTEIN P87
ORGYIA PSEUDOTSUGATA MULTICAPSID
77-112

POLYHEDROSIS VIRUS (OPMNPV)

PVP8_BTV10
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139

(SEROTYPE 10/ISOLATE USA)

PVP8_BTV11
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139

(SEROTYPE 11/ISOLATE USA)

PVP8_BTV13
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139

(SEROTYPE 13/ISOLATE USA)

PVP8_BTV17
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139

(SEROTYPE 17/ISOLATE USA)

PVP8_BTV1A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139

(SEROTYPE 1/ISOLATE AUSTRALIA)

PVP8_BTV1S
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139

(SEROTYPE 1/ISOLATE SOUTH AFRICA)

PVP8_BTV2A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139

(SEROTYPE 2/ISOLATE USA)

PVP8_RDV
OUTER CAPSID PROTEIN P8
RICE DWARF VIRUS (RDV)
374-412

PVP8_WTV
OUTER CAPSID PROTEIN P8
WOUND TUMOR VIRUS (WTV)
164-195
379-412

PVPHE_NPVAC
29 KD POLYHEDRAL ENVELOPE PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
145-173

POLYHEDROSIS VIRUS (ACMNPV)

PVPHE_NPVOP
32 KD POLYHEDRAL ENVELOPE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
122-151

POLYHEDROSIS VIRUS (OPMNPV)

PVPR_HV1A2
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
37-74

(ARV2/SF2 ISOLATE) (HIV-1)

PVPR_HV2BE
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73

(ISOLATE BEN) (HIV-2)

PVPR_HV2CA
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73

(ISOLATE CAM2) (HIV-2)

PVPR_HV2D1
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73

(ISOLATE D194) (HIV-2)

PVPR_HV2D2
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73

(ISOLATE D205,7) (HIV-2)

PVPR_HV2NZ
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73

(ISOLATE NIH-Z) (HIV-2)

PVPR_HV2RO
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73

(ISOLATE ROD) (HIV-2)

PVPR_HV2SB
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73

(ISOLATE SBLISY) (HIV-2)

PVPR_HV2ST
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
40-72

(ISOLATE ST) (HIV-2)

PVPR_SIVCZ
VPR PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
37-74

(SIV(CPZ)) (CIV)

PVPR_SIVMI
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69

(MM142-83 ISOLATE) (SIV-MAC)

PVPR_SIVMK
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69

(K6W ISOLATE) (SIV-MAC)

PVPR_SIVML
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69

(K78 ISOLATE) (SIV-MAC)

PVPR_SIVS4
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69

(F236/SMH4 ISOLATE) (SOOTY MANGA

PVPR_SIVSP
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69

(PBJ/BC13 ISOLATE) (SOOTY MANGABE

PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-33

(BH10 ISOLATE, HXB3 ISOLATE)

PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
4-33

(BH8 ISOLATE) (HIV-1)

PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-34

(BRAIN ISOLATE) (HIV-1)

PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-33

(BRU ISOLATE) (HIV-1)

PVPU_HVH12
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
4-33

(HXB2 ISOLATE) (HIV-1)

PVPU_HVIJR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-34

(JRCSF ISOLATE) (HIV-1)

PVPU_HVIPV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-33

(PV22 ISOLATE) (HIV-1)

PVPU_JSRV
VPU PROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
116-154

PVPX_LDV
VPX PROTEIN
LACTATE DEHYDROGENASE-ELEVATING
25-55

VIRUS (LDV)

PVPY_BIV2
ORF-Y PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
35-71

(ISOLATE 127) (BIV)

PVRNA_BSMV
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
290-319
676-705

PVS05_ROTH1
NONSTRUCTURAL PROTEIN NCVP2
HUMAN ROTAVIRUS (STRAIN IGV-80-3)
198-230

PVS05_ROTPC
NONSTRUCTURAL PROTEIN NS53
PORCINE ROTAVIRUS (GROUP C/
88-119
358-392

STRAIN COWDEN)

PVS05_ROTS1
NONSTRUCTURAL PROTEIN NCVP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
315-347

PVS06_ROTBR
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN RF)
55-92

PVS06_ROTBS
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/
64-92
312-340

STRAIN SHINTOKU)

PVS06_ROTBU
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
55-92

PVS06_ROTEF
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN FI-14)
55-92

PVS06_ROTEH
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN H-2)
55-92

PVS06_ROTH1
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/
55-92

STRAIN 1076)

PVS06_ROTHC
VP6 PROTEIN
HUMAN ROTAVIRUS (GROUP C/
64-92
312-340

STRAIN BRISTOL)

PVS06_ROTHS
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/
55-92

STRAIN S2)

PVS06_ROTHW
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/
55-92
313-349

STRAIN WA)

PVS06_ROTPC
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/
64-92

STRAIN COWDEN)

PVS06_ROTPG
VP6 PROTEIN
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
55-92
313-349

PVS06_ROTS1
VP6 PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
55-92
313-349

PVS08_ROTS1
NONSTRUCTURAL PROTEIN NCVP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
274-302

PVS09_ROTHT
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/
131-159

STRAIN ST. THOMAS 3)

PVS09_ROTPB
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 4/
131-159

STRAIN BEN-144)

PVS10_ROTBN
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN NCDV)
52-89

PVS10_ROTBU
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN UK)
52-89

PVS10_ROTH2
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A28)
52-89

PVS10_ROTH7
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/
52-89

CLONE 2)

PVS10_ROTH8
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/
52-89

CLONE 6

PSV10_ROTHW
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (SEROTYPE 1/
52-89

STRAIN WA)

PVS10_ROTS1
NONSTRUCTURAL GLYCOPROTEIN NCVP5
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
52-89

PVS11_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/
99-130

STRAIN WA)

PVS11_REOVJ
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 2/
346-384

STRAIN D5/JONES)

PVS11_REOVL
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 1/STRAIN LANG)
110-147

PVT1_SFVKA
PROTEIN T1 PRECURSOR
SHOPE FIBROMA VIRUS
147-182

(STRAIN KASZA) (SFV)

PVT2_MYXVL
TUMOR NECROSIS FACTOR SOLUBLE
MYXOMA VIRUS (STRAIN LAUSANNE)
261-290

RECEPTOR PRECUR

PVT2_SFVKA
TUMOR NECROSIS FACTOR SOLUBLE
SHOPE FIBROMA VIRUS
211-249

RECEPTOR PRECUR
(STRAIN KASZA) (SFV)

PVT3A_CAPV1
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
116-150

PVTER_EBV
PROBABLE DNA PACKAGING PROTEIN
EPSTEIN-BARR VIRUS
166-199
505-543

(STRAIN B95-8) (HUMAN HERPESVIRUS 4)

PVTER_HCMVA
PROBABLE DNA PACKAGING PROTEIN
HUMAN CYTOMEGALOVIRUS
176-209

(STRAIN AD169)

PVTER_HSV11
PROBABLE DNA PACKAGING PROTEIN
ICTALURID HERPESVIRUS 1
756-788

(CHANNEL CATFISH VIRUS) (CCV)

PVX_SEND6
X PROTEIN
SENDAI VIRUS (STRAIN 6/94)
57-93

PY104_ADE07
HYPOTHETICAL 10.4 KD EARLY PROTEIN
HUMAN ADENOVIRUS TYPE 7
55-83

PY10K_MSVS
HYPOTHETICAL 10.9 KD PROTEIN
MAIZE STREAK VIRUS
24-54

(SOUTH-AFRICAN ISOLATE) (MSV)

PY10K_WDV
HYPOTHETICAL 10 KD PROTEIN
WHEAT DWARF VIRUS (WDV)
22-59

PY119_SSV1
HYPOTHETICAL 11.9 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
29-64

PY11K_PASV
HYPOTHETICAL 11.9 KD PROTEIN (ORF VI)
PANICUM STREAK VIRUS
29-61

PY11K_ROTS1
HYPOTHETICAL 11 KD PROTEIN IN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
53-87

SEGMENT S11

PY11K_TYDVA
HYPOTHETICAL 11.2 KD PROTEIN
TOBACCO YELLOW DWARF VIRUS
28-62

(STRAIN AUSTRALIA) (TYDV)

PY14K_NPVAC
HYPOTHETICAL 13.8 KD PROTEIN IN
AUTOGRAPHA CALIFORNICA NUCLEAR
65-101

39 KD PROTEIN 5′REG
POLYHEDROSIS VIRUS (ACMNPV)

PY18K_SSV1
HYPOTHETICAL 18.0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
100-132

(ORF B-166)

PY20K_SSV1
HYPOTHETICAL 20.4 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
129-167

(ORF E-178)

PY21K_MSVN
HYPOTHETICAL 21.7 KD PROTEIN
MAIZE STREAK VIRUS
122-155

(NIGERIAN ISOLATE) (MSV)

PY2_SOCMV
HYPOTHETICAL PROTEIN 2 (ORF 11)
SOYBEAN CHLOROTIC MOTTLE VIRUS
99-137

PY38K_NPVAC
HYPOTHETICAL 37.7 KD PROTEIN (ORF2)
AUTOGRAPHA CALIFORNICA NUCLEAR
250-282

POLYHEDROSIS VIRUS (ACMNPV)

PY85K_SSV1
HYPOTHETICAL 85.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
274-312
543-580

(ORF C-792)

PYB13_FOWPM
HYPOTHETICAL BAMHI-ORF13 PROTEIN
FOWLPOX VIRUS (ISOLATE
114-150

(FRAGMENT)
HP-438[MUNICH])

PYDH1_HSVSC
HYPOTHETICAL 28.7 KD PROTEIN IN
HERPESVIRUS SAIMIRI (SUBGROUP
206-244

DHFR 3′REGION (ORF
C/STRAIN 488)

PYDH3_HSVSC
HYPOTHETICAL 9.5 KD PROTEIN IN
HERPESVIRUS SAIMIRI (SUBGROUP
69-97

DHFR 3′REGION (ORF3)
C/STRAIN 488)

PYEC4_EBV
HYPOTHETICAL EC-RF4 PROTEIN
EPSTEIN-BARR VIRUS
34-68

(STRAIN B95-8) (HUMAN HERPESVIRUS 4)

PYIO1_CVBM
HYPOTHETICAL PROTEIN IORF1
BOVINE CORONAVIRUS
84-122

PYIOR_CVBF
HYPOTHETICAL PROTEIN IN
BOVINE CORONAVIRUS (STRAIN F15)
41-75
137-165

NUCLEOCAPSID ORF (IORF)

PYIOR_CVBM
HYPOTHETICAL PROTEIN IN
BOVINE CORONAVIRUS (STRAIN MEBUS)
41-74
137-165

NUCLEOCAPSID ORF (IORF)

PYIOR_CVTKE
HYPOTHETICAL PROTEIN IN
TURKEY ENTERIC CORONAVIRUS (TCV)
41-74
137-165

NUCLEOCAPSID ORF (IORF)

PYKR2_EBV
HYPOTHETICAL BKRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
67-100

(HUMAN HERPESVIRUS 4)

PYMR2_EBV
BMRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
250-284

(HUMAN HERPESVIRUS 4)

PYOR1_COYMV
HYPOTHETICAL 23 KD PROTEIN (ORF1)
COMMELINA YELLOW MOTTLE VIRUS
93-130
166-198

(COYMV)

PYOR2_COYMV
HYPOTHETICAL 15 KD PROTEIN (ORF2)
COMMELINA YELLOW MOTTLE VIRUS
23-56

(COYMV)

PYOR3_PVXXC
HYPOTHETICAL 12 KD PROTEIN (ORF3)
POTATO VIRUS X (STRAIN XC) (PVX)
7-39

(FRAGMENT)

PYOR3_WCMVM
HYPOTHETICAL 13 KD PROTEIN (ORF 3)
WHITE CLOVER MOSAIC VIRUS
63-94

(STRAIN M) (WCMV)

PYOR3_WCMVO
HYPOTHETICAL 13 KD PROTEIN (ORF 3)
WHITE CLOVER MOSAIC VIRUS
64-95

(STRAIN O) (WCMV)

PYOR5_ADEG1
HYPOTHETICAL 31.5 KD PROTEIN (ORF 5)
AVIAN ADENOVIRUS GAL1
237-272

PYORG_TTV1
HYPOTHETICAL 7.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS
5-34

1 (STRAIN KRA1) (TTV1)

PYORM_TTV1
HYPOTHETICAL 38.6 KD PROTEIN
THERMOPROTEUS TENAX VIRUS
233-263

1 (STRAIN KRA1) (TTV1)

PYORP_TTV1
HYPOTHETICAL 20.2 KD PROTEIN
THERMOPROTEUS TENAX VIRUS
91-124

1 (STRAIN KRA1) (TTV1)

PYP24_RTBV
HYPOTHETICAL P24 PROTEIN (ORF 1
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
104-133
159-191

PVP24_RTBVP
HYPOTHETICAL P24 PROTEIN (ORF 1)
RICE TUNGRO BACILLIFORM VIRUS
104-133
159-191

(ISOLATE PHILIPPINES) (RTBV)

PYP47_NPVAC
HYPOTHETICAL 43.5 KD PROTEIN IN
AUTOGRAPHA CALIFORNICA NUCLEAR
23-51

P43 3′REGION
POLYHEDROSIS VIRUS (ACMNPV)

PYRF5_HSV6G
HYPOTHETICAL PROTEIN RF5
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
180-216

PYRR2_EBV
HYPOTHETICAL BRRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
13-42

B95-8) (HUMAN HERPESVIRUS 4)

PYSR1_EBV
HYPOTHETICAL BSRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
92-120

B95-8) (HUMAN HERPESVIRUS 4)

PYTR1_EBV
HYPOTHETICAL BTRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
306-336

B95-8) (HUMAN HERPESVIRUS 4)

PYVAE_VACCC
HYPOTHETICAL 18.2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
21-53

PYVAL_VACCV
HYPOTHETICAL 9.9 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGE
21-49

PYVBC_VACCC
HYPOTHETICAL 10.8 KD PROTEIN
VACCINIA VIRUS
22-53

(STRAIN COPENHAGEN)

PYVDG_VACCV
HYPOTHETICAL 10.4 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
31-64

VACCINIA VIRUS (STRAIN COPENHAGE

PYVEF_VACCC
HYPOTHETICAL 12.9 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
8-42

PYVFC_VACCC
HYPOTHETICAL 11.6 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-35

PZNFP_LYCVA
ZINC FINGER PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS
29-57

VIRUS (STRAIN ARMSTRONG)

PZNFP_LYCVP
ZINC FINGER PROTEIN (FRAGMENT)
LYMPHOCYTIC CHORIOMENINGITIS
8-32

VIRUS (STRAIN PASTEUR)

TABLE XV

RESPIRATORY SYNCYTIAL VIRUS DP107 F2 REGION

ANALOG CARBOXY TRUNCATIONS

X-YTS-Z
(SEQ ID NO:16)

X-YTSV-Z

X-YTSVI-Z

X-YTSVIT-Z

X-YTSVITI-Z

X-YTSVITIE-Z

X-YTSVITIEL-Z

X-YTSVITIELS-Z

X-YTSVITIELSN-Z

X-YTSVITIELSNI-Z

X-YTSVITIELSNIK-Z

X-YTSVITIELSNIKE-Z

X-YTSVITIELSNIKEN-Z

X-YTSVITIELSNIKENK-Z

X-YTSVITIELSNIKENKC-Z

X-YTSVITIELSNIKENKCN-Z

X-YTSVITIELSNIKENKCNG-Z

X-YTSVITIELSNIKENKCNGT-Z

X-YTSVITIELSNIKENKCNGTD-Z

X-YTSVITIELSNIKENKCNGTDA-Z

X-YTSVITIELSNIKENKCNGTDAK-Z

X-YTSVITIELSNIKENKCNGTDAKV-Z

X-YTSVITIELSNIKENKCNGTDAKVK-Z

X-YTSVITIELSNIKENKCNGTDAKVKL-Z

X-YTSVITIELSNIKENKCNGTDAKVKLI-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIK-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQ-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQE-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQEL-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELD-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDK-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKY-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYK-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKN-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNA-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAV-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVT-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTE-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTEL-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQ-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQL-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLL-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLM-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQ-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQS-Z

X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z

The one letter amino acid code is used.

Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxycarbonyl (FMOC) group; a macromolecular carrier group. including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XVI

RESPIRATORY SYNCYTIAL VIRUS F2 DP178/DP107 REGION

ANALOG AMINO TRUNCATIONS

X-QST-Z

X-M Q S T-Z

X-L M Q S T-Z

X-L L M Q S T-Z

X-Q L L M Q S T-Z

X-L Q L L M Q S T-Z

X-E L Q L L M Q S T-Z

X-T E L Q L L M Q S T-Z

X-V T E L Q L L M Q S T-Z

X-A V T E L Q L L M Q S T-Z

X-N A V T E L Q L L M Q S T-Z

X-K N A V T E L Q L L M Q S T-Z

X-Y K N A V T E L Q L L M Q S T-Z

X-K Y K N A V T E L Q L L M Q S T-Z

X-D K Y K N A V T E L Q L L M Q S T-Z

X-L D K Y K N A V T E L Q L L M Q S T-Z

X-E L D K Y K N A V T E L Q L L M Q S T-Z

X-Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-I T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-V I T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-S V I T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

X-T S V I T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z

The one letter amino acid code is used.

TABLE XVII

RESPIRATORY SYNCYTIAL VIRUS F1 DP178 REGION

ANALOG CARBOXY TRUNCATIONS

X-FYD-Z

X-FYDP-Z

X-FYDPL-Z

X-FYDPLV-Z

X-FYDPLVF-Z

X-FYDPLVFP-Z

X-FYDPLVFPS-Z

X-FYDPLVFPSD-Z

X-FYDPLVFPSDE-Z

X-FYDPLVFPSDEF-Z

X-FYDPLVFPSDEFD-Z

X-FYDPLVFPSDEFDA-Z

X-FYDPLVFPSDEFDAS-Z

X-FYDPLVFPSDEFDASI-Z

X-FYDPLVFPSDEFDASIS-Z

X-FYDPLVFPSDEFDASISQ-Z

X-FYDPLVFPSDEFDASISQV-Z

X-FYDPLVFPSDEFDASISQVN-Z

X-FYDPLVFPSDEFDASISQVNE-Z

X-FYDPLVFPSDEFDASISQVNEK-Z

X-FYDPLVFPSDEFDASISQVNEKI-Z

X-FYDPLVFPSDEFDASISQVNEKIN-Z

X-FYDPLVFPSDEFDASISQVNEKINQ-Z

X-FYDPLVFPSDEFDASISQVNEKINQS-Z

X-FYDPLVFPSDEFDASISQVNEKINQSL-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLA-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLAF-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLAFI-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLAFIR-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRK-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKS-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSD-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDE-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDEL-Z

X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z

The one letter amino acid code is used.

TABLE XVIII

RESPIRATORY SYNCYTIAL VIRUS F1 DP178 REGION

ANALOG AMINO TRUNCATIONS

X-DELL-Z

X-SDELL-Z

X-KSDELL-Z

X-RKSDELL-Z

X-IRKSDELL-Z

X-FIRKSDELL-Z

X-AFIRKSDELL-Z

X-LAFIRKSDELL-Z

X-SLAFIRKSDELL-Z

X-QSLAFIRKSDELL-Z

X-NQSLAFIRKSDELL-Z

X-INQSLAFIRKSDELL-Z

X-KINQSLAFIRKSDELL-Z

X-EKINQSLAFIRKSDELL-Z

X-NEKINQSLAFIRKSDELL-Z

X-VNEKINQSLAFIRKSDELL-Z

X-QVNEKINQSLAFIRKSDELL-Z

X-SQVNEKINQSLAFIRKSDELL-Z

X-ISQVNEKINQSLAFIRKSDELL-Z

X-SISQVNEKINQSLAFIRKSDELL-Z

X-ASISQVNEKINQSLAFIRKSDELL-Z

X-DASISQVNEKINQSLAFIRKSDELL-Z

X-FDASISQVNEKINQSLAFIRKSDELL-Z

X-EFDASISQVNEKINQSLAFIRKSDELL-Z

X-DEFDASISQVNEKINQSLAFIRKSDELL-Z

X-SDEFDASISQVNEKINQSLAFIRKSDELL-Z

X-PSDEFDASISQVNEKINQSLAFIRKSDELL-Z

X-FPSDEFDASISQVNEKINQSLAFIRKSDELL-Z

X-VFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z

X-LVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z

X-PLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z

X-DPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z

X-YDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z

The one letter amino acid code is used.

TABLE XIX

HUMAN PARAINFLUENZA VIRUS 3 F1 REGION

DP178 ANALOG CARBOXY TRUNCATIONS

X-ITL-Z

X-ITLN-Z

X-ITLNN-Z

X-ITLNNS-Z

X-ITLNNSV-Z

X-ITLNNSVA-Z

X-ITLNNSVAL-Z

X-ITLNNSVALD-Z

X-ITLNNSVALDP-Z

X-ITLNNSVALDPI-Z

X-ITLNNSVALDPID-Z

X-ITLNNSVALDPIDI-Z

X-ITLNNSVALDPIDIS-Z

X-ITLNNSVALDPIDISI-Z

X-ITLNNSVALDPIDISIE-Z

X-ITLNNSVALDPIDISIEL-Z

X-ITLNNSVALDPIDISIELN-Z

X-ITLNNSVALDPIDISIELNK-Z

X-ITLNNSVALDPIDISIELNKA-Z

X-ITLNNSVALDPIDISIELNKAK-Z

X-ITLNNSVALDPIDISIELNKAKS-Z

X-ITLNNSVALDPIDISIELNKAKSD-Z

X-ITLNNSVALDPIDISIELNKAKSDL-Z

X-ITLNNSVALDPIDISIELNKAKSDLE-Z

X-ITLNNSVALDPIDISIELNKAKSDLEE-Z

X-ITLNNSVALDPIDISIELNKAKSDLEES-Z

X-ITLNNSVALDPIDISIELNKAKSDLEESK-Z

X-ITLNNSVALDPIDISIELNKAKSDLEESKE-Z

X-ITLNNSVALDPIDISIELNKAKSDLEESKEW-Z

X-ITLNNSVALDPIDISIELNKAKSDLEESKEWI-Z

X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIR-Z

X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIRR-Z

X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z

The one letter amino acid code is used.

TABLE XX

HUMAN PARAINFLUENZA VIRUS 3 F1 REGION

DP178 ANALOG AMINO TRUNCATIONS

X-RRS-Z

X-IRRS-Z

X-WIRRS-Z

X-EWIRRS-Z

X-KEWIRRS-Z

X-SKEWIRRS-Z

X-ESKEWIRRS-Z

X-EESKEWIRRS-Z

X-LEESKEWIRRS-Z

X-DLEESKEWIRRS-Z

X-SDLEESKEWIRRS-Z

X-KSDLEESKEWIRRS-Z

X-AKSDLEESKEWIRRS-Z

X-KAKSDLEESKEWIRRS-Z

X-NKAKSDLEESKEWIRRS-Z

X-LNKAKSDLEESKEWIRRS-Z

X-ELNKAKSDLEESKEWIRRS-Z

X-IELNKAKSDLEESKEWIRRS-Z

X-SIELNKAKSDLEESKEWIRRS-Z

X-ISIELNKAKSDLEESKEWIRRS-Z

X-DISIELNKAKSDLEESKEWIRRS-Z

X-IDISIELNKAKSDLEESKEWIRRS-Z

X-PIDISIELNKAKSDLEESKEWIRRS-Z

X-DPIDISIELNKAKSDLEESKEWIRRS-Z

X-LDPIDISIELNKAKSDLEESKEWIRRS-Z

X-ALDPIDISIELNKAKSDLEESKEWIRRS-Z

X-VALDPIDISIELNKAKSDLEESKEWIRRS-Z

X-SVALDPIDISIELNKAKSDLEESKEWIRRS-Z

X-NSVALDPIDISIELNKAKSDLEESKEWIRRS-Z

X-NNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z

X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z

X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z

The one letter amino acid code is used.

Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XXI

HUMAN PARAINFLUENZA VIRUS 3 F1 REGION

DP107 ANALOG CARBOXY TRUNCATIONS

X-ALG-Z

X-ALGV-Z

X-ALGVA-Z

X-ALGVAT-Z

X-ALGVATS-Z

X-ALGVATSA-Z

X-ALGVATSAQ-Z

X-ALGVATSAQI-Z

X-ALGVATSAQIT-Z

X-ALGVATSAQITA-Z

X-ALGVATSAQITAA-Z

X-ALGVATSAQITAAV-Z

X-ALGVATSAQITAAVA-Z

X-ALGVATSAQITAAVAL-Z

X-ALGVATSAQITAAVALV-Z

X-ALGVATSAQITAAVALVE-Z

X-ALGVATSAQITAAVALVEA-Z

X-ALGVATSAQITAAVALVEAK-Z

X-ALGVATSAQITAAVALVEAKQ-Z

X-ALGVATSAQITAAVALVEAKQA-Z

X-ALGVATSAQITAAVALVEAKQAR-Z

X-ALGVATSAQITAAVALVEAKQARS-Z

X-ALGVATSAQITAAVALVEAKQARSD-Z

X-ALGVATSAQITAAVALVEAKQARSDI-Z

X-ALGVATSAQITAAVALVEAKQARSDIE-Z

X-ALGVATSAQITAAVALVEAKQARSDIEK-Z

X-ALGVATSAQITAAVALVEAKQARSDIEKL-Z

X-ALGVATSAQITAAVALVEAKQARSDIEKLK-Z

X-ALGVATSAQITAAVALVEAKQARSDIEKLKE-Z

X-ALGVATSAQITAAVALVEAKQARSDIEKLKEA-Z

X-ALGVATSAQITAAVALVEAKQARSDIEKLKEAI-Z

X-ALGVATSAQITAAVALVEAKQARSDIEKLKEAIR-Z

The one letter amino acid code is used.

TABLE XXII

HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP107

ANALOG AMINO TRUNCATIONS

X-IRD-Z

X-AIRD-Z

X-EAIRD-Z

X-KEAIRD-Z

X-LKEAIRD-Z

X-KLKEAIRD-Z

X-EKLKEAIRD-Z

X-IEKLKEAIRD-Z

X-KIEKLKEAIRD-Z

X-SKIEKLKEAIRD-Z

X-DSKIEKLKEAIRD-Z

X-ARSDKIEKLKEAIRD-Z

X-QARSDIEKLKEAIRD-Z

X-KQARSDIEKLKEAIRD-Z

X-AKQARSDIEKLKEAIRD-Z

X-EAKQARSDIEKLKEAIRD-Z

X-VEAKQARSDIEKLKEAIRD-Z

X-LVEAKQARSDIEKLKEAIRD-Z

X-ALVEAKQARSDIEKLKEAIRD-Z

X-VALVEAKQARSDIEKLKEAIRD-Z

X-AVALVEAKQARSDIEKLKEAIRD-Z

X-AAVALVEAKQARSDIEKLKEAIRD-Z

X-TAAVALVEAKQARSDIEKLKEAIRD-Z

X-ITAAVALVEAKQARSDIEKLKEAIRD-Z

X-QITAAVALVEAKQARSDIEKLKEAIRD-Z

X-AQITAAVALVEAKQARSDIEKLKEAIRD-Z

X-SAQITAAVALVEAKQARSDIEKLKEAIRD-Z

X-TSAQITAAVALVEAKQARSDIEKLKEAIRD-Z

X-ATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z

X-VATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z

X-GVATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z

X-LGVATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z

The one letter amino acid code is used.

TABLE XXIII

REPRESENTATIVE DP107/DP178 ANALOG

ANTIVIRAL PEPTIDES

Anti-Respiratory syncytial virus peptides

X-TSVITIELSNIKENKCNGTDAKVKLIKQELDKYKN-Z

X-SVITIELSNIKENKCNGTDAKVKLIKQELDKYKNA-Z

X-VITIELSNIKENKCNGTDAKVKLIKQELDKYKNAV-Z

X-VAVSKVLHLEGEVNKIALLSTNKAVVSLSNGVS-Z

X-AVSKVLHLEGEVNKIALLSTNKAVVSLSNGVSV-Z

X-VSKVLHLEGEVNKIALLSTNKAVVSLSNGVSVL-Z

X-SKVLHLEGEVNKIALLSTNKAVVSLSNGVSVLT-Z

X-KVLHLEGEVNKIALLSTNKAVVSLSNGVSVLTS-Z

X-LEGEVNKIALLSTNKAVVSLSNGVSVLTSKVLD-Z

X-GEVNKIALLSTNKAVVSLSNGVSVLTSKVLDLK-Z

X-EVNKIALLSTNKAVVSLSNGVSVLTSKVLDLKN-Z

X-VNKIALLSTNKAVVSLSNGVSVLTSKVLDLKNY-Z

X-NKIALLSTNKAVVSLSNGVSVLTSKVLDLKNYI-Z

X-KIALLSTNKAVVSLSNGVSVLTSKVLDLKNYID-Z

X-IALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK-Z

X-ALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQ-Z

X-VAVSKVLHLEGEVNKIALLSTNKAVVSLSNGVS-Z

X-AVSKVLHLEGEVNKIALLSTNKAVVSLSNGVSV-Z

X-VSKVLHLEGEVNKIALLSTNKAVVSLSNGVSVL-Z

X-SKVLHLEGEVNKIALLSTNKAVVSLSNGVSVLT-Z

X-KVLHLEGEVNKIALLSTNKAVVSLSNGVSVLTS-Z

X-LEGEVNKIALLSTNKAVVSLSNGVSVLTSKVLD-Z

X-GEVNKIALLSTNKAVVSLSNGVSVLTSKVLDLK-Z

X-EVNKIALLSTNKAVVSLSNGVSVLTSKVLDLKN-Z

X-VNKIALLSTNKAVVSLSNGVSVLTSKVLDLKNY-Z

X-NKIALLSTNKAVVSLSNGVSVLTSKVLDLKNYI-Z

X-KIALLSTNKAVVSLSNGVSVLTSKVLDLKNYID-Z

X-IALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK-Z

X-ALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQ-Z

Anti-human parainfluenza virus 3 peptides

X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRSN-Z

X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRSNQ-Z

X-NNSVALDPIDISIELNKAKSDLEESKEWIRRSNQK-Z

X-NSVALDPIDISIELNKAKSDLEESKEWIRRSNQKL-Z

X-SVALDPIDISIELNKAKSDLEESKEWIRRSNQKLD-Z

X-VALDPIDISIELNKAKSDLEESKEWIRRSNQKLDS-Z

X-ALDPIDISIELNKAKSDLEESKEWIRRSNQKLDSI-Z

X-LDPIDISIELNKAKSDLEESKEWIRRSNQKLDSIG-Z

X-DPIDISIELNKAKSDLEESKEWIRRSNQKLDSIGN-Z

X-PIDISIELNKAKSDLEESKEWIRRSNQKLDSIGNW-Z

X-IDISIELNKAKSDLEESKEWIRRSNQKLDSIGNWH-Z

X-DISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQ-Z

X-ISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQS-Z

X-SIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSS-Z

X-IELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSST-Z

X-ELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSSTT-Z

X-TAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQS-Z

X-AVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSI-Z

X-LVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNL-Z

X-VEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLI-Z

X-EAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIV-Z

X-AKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVA-Z

X-KQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAI-Z

X-QARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-Z

X-ARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKS-Z

X-RSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSV-Z

X-SDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQ-Z

X-KLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVN-Z

X-LKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNK-Z

X-AIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKEIV-Z

Anti-simian immunodeficiency virus peptides

X-WQEWERKVDFLEENITALLEEAQIQQEKNMYELQK-Z

X-QEWERKVDFLEENITALLEEAQIQQEKNMYELQKL-Z

X-EWERKVDFLEENITALLEEAQIQQEKNMYELQKLN-Z

X-WERKVDFLEENITALLEEAQIQQEKNMYELQKLNS-Z

X-ERKVDFLEENITALLEEAQIQQEKNMYELQKLNSW-Z

X-RKVDFLEENITALLEEAQIQQEKNMYELQKLNSWD-Z

X-KVDFLEENITALLEEAQIQQEKNMYELQKLNSWDV-Z

X-VDFLEENITALLEEAQIQQEKNMYELQKLNSWDVF-Z

X-DFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG-Z

X-FLEENITALLEEAQIQQEKNMYELQKLNSWDVFGN-Z

Anti-measles virus peptides

X-LHRIDLGPPISLERLDVGTNLGNAIAKLEAKELL-Z

X-HRIDLGPPISLERLDVGTNLGNAIAKLEAKELLE-Z

X-RIDLGPPISLERLDVGTNLGNAIAKLEAKELLES-Z

X-IDLGPPISLERLDVGTNLGNAIAKLEAKELLESS-Z

X-DLGPPISLERLDVGTNLGNAIAKLEAKELLESSD-Z

X-LGPPISLERLDVGTNLGNAIAKLEAKELLESSDQ-Z

X-GPPISLERLDVGTNLGNAIAKLEAKELLESSDQI-Z

X-PPISLERLDVGTNLGNAIAKLEAKELLESSDQIL-Z

X-PISLERLDVGTNLGNAIAKLEAKELLESSDQILR-Z

X-SLERLDVGTNLGNAIAKLEAKELLESSDQILRSM-Z

X-LERLDVGTNLGNAIAKLEAKELLESSDQILRSMK-Z

The one letter amino acid code is used.

5.4. Synthesis of Peptides

The peptides of the invention may be synthesized or prepared by techniques well known in the art. See, for example, Creighton, 1983, Proteins: Structures and Molecular Principles, W. H. Freeman and Co., NY, which is incorporated herein by reference in its entirety. Short peptides, for example, can be synthesized on a solid support or in solution. Longer peptides may be made using recombinant DNA techniques. Here, the nucleotide sequences encoding the peptides of the invention may be synthesized, and/or cloned, and expressed according to techniques well known to those of ordinary skill in the art. See, for example, Sambrook, et al., 1989, Molecular Cloning, A Laboratory Manual, Vols. 1-3, Cold Spring Harbor Press, NY.

The peptides of the invention may alternatively be synthesized such that one or more of the bonds which link the amino acid residues of the peptides are non-peptide bonds. These alternative non-peptide bonds may be formed by utilizing reactions well known to those in the art, and may include, but are not limited to imino, ester, hydrazide, semicarbazide, and azo bonds, to name but a few. In yet another embodiment of the invention, peptides comprising the sequences described above may be synthesized with additional chemical groups present at their amino and/or carboxy termini, such that, for example, the stability, bioavailability, and/or inhibitory activity of the peptides is enhanced. For example, hydrophobic groups such as carbobenzoxyl, dansyl, or t-butyloxycarbonyl groups, may be added to the peptides' amino termini. Likewise, an acetyl group or a 9-fluorenylmethoxy-carbonyl group may be placed at the peptides' amino termini. (See “X” in Tables I to IV, above.) Additionally, the hydrophobic group, t-butyloxycarbonyl, or an amido group may be added to the peptides' carboxy termini. (See “Z” in Tables I to IV, above.)

Further, the peptides of the invention may be synthesized such that their steric configuration is altered. For example, the D-isomer of one or more of the amino acid residues of the peptide may be used, rather than the usual L-isomer.

Still further, at least one of the amino acid residues of the peptides of the invention may be substituted by one of the well known non-naturally occurring amino acid residues. Alterations such as these may serve to increase the stability, bioavailability and/or inhibitory action of the peptides of the invention.

Any of the peptides described above may, additionally, have a macromolecular carrier group covalently attached to their amino and/or carboxy termini. Such macromolecular carrier groups may include, for example, lipid-fatty acid conjugates, polyethylene glycol, carbohydrates or additional peptides. “X”, in Tables I to IV, above, may therefore additionally represent any of the above macromolecular carrier groups covalently attached to the amino terminus of a peptide, with an additional peptide group being preferred. Likewise, “Z”, in Tables I to IV, may additionally represent any of the macromolecular carrier groups described above.

5.5. Assays for Anti-membrane Fusion Activity

Described herein, are methods for ability of a compound, such as the peptides of the invention, to inhibit membrane fusion events. Specifically, assays for cell fusion events are described in Section 5.5.1, below, and assays for antiviral activity are described in Section 5.5.2, below.

5.5.1 Assays for Cell Fusion Events

Assays for cell fusion events are well known to those of skill in the art, and may be used in conjunction, for example, with the peptides of the invention to test the peptides' antifusogenic capabilities.

Cell fusion assays are generally performed in vitro. Such an assay may comprise culturing cells which, in the absence of any treatment would undergo an observable level of syncytial formation. For example, uninfected cells may be incubated in the presence of cells chronically infected with a virus that induces cell fusion. Such viruses may include, but are not limited to, HIV, SIV, or respiratory syncytial virus.

For the assay, cells are incubated in the presence of a peptide to be assayed. For each peptide, a range of peptide concentrations may be tested. This range should include a control culture wherein no peptide has been added.

Standard conditions for culturing cells, well known to those of ordinary skill in the art, are used. After incubation for an appropriate period (24 hours at 37° C., for example) the culture is examined microscopically for the presence of multinucleated giant cells, which are indicative of cell fusion and syncytial formation. Well known stains, such as crystal violet stain, may be used to facilitate the visualization of syncytial formation.

5.5.2 Assays for Antiviral Activity

The antiviral activity exhibited by the peptides of the invention may be measured, for example, by easily performed in vitro assays, such as those described below, which can test the peptides' ability to inhibit syncytia formation, or their ability to inhibit infection by cell-free virus. Using these assays, such parameters as the relative antiviral activity of the peptides, exhibit against a given strain of virus and/or the strain specific inhibitory activity of the peptide can be determined.

A cell fusion assay may be utilized to test the peptides' ability to inhibit viral-induced, such as HIV-induced, syncytia formation in vitro. Such an assay may comprise culturing uninfected cells in the presence of cells chronically infected with a syncytial-inducing virus and a peptide to be assayed. For each peptide, a range of peptide concentrations may be tested. This range should include a control culture wherein no peptide has been added. Standard conditions for culturing, well known to those of ordinary skill in the art, are used. After incubation for an appropriate period (24 hours at 37° C., for example) the culture is examined microscopically for the presence of multinucleated giant cells, which are indicative of cell fusion and, syncytia formation. Well known stains, such as crystal violet stain, may be used to facilitate syncytial visualization. Taking HIV as an example, such an assay would comprise CD-4⁺ cells (such as Molt or CEM cells, for example) cultured in the presence of chronically HIV-infected cells and a peptide to be assayed.

Other well known characteristics of viral infection may also be assayed to test a peptide's antiviral capabilities. Once again taking HIV as an example, a reverse transcriptase (RT) assay may be utilized to test the peptides' ability to inhibit infection of CD-4⁺ cells by cell-free HIV. Such an assay may comprise culturing an appropriate concentration (i.e., TCID₅₀) of virus and CD-4⁺ cells in the presence of the peptide to be tested. Culture conditions well known to those in the art are used. As above, a range of peptide concentrations may be used, in addition to a control culture wherein no peptide has been added. After incubation for an appropriate period (e.g., 7 days) of culturing, a cell-free supernatant is prepared, using standard procedures, and tested for the present of RT activity as a measure of successful infection. The RT activity may be tested using standard techniques such as those described by, for example, Goff et al. (Goff, S. et al., 1981, J. Virol. 38:239-248) and/or Willey et al. (Willey, R. et al., 1988, J. Virol. 62:139-147). These references are incorporated herein by reference in their entirety.

Standard methods which are well-known to those of skill in the art may be utilized for assaying non-retroviral activity. See, for example, Pringle et al. (Pringle, C. R. et al., 1985, J. Medical Virology 17:377-386) for a discussion of respiratory syncytial virus and parainfluenza virus activity assay techniques. Further, see, for example, “Zinsser Microbiology”, 1988, Joklik, W. K. et al., eds., Appleton & Lange, Norwalk, Conn., 19th ed., for a general review of such techniques. These references are incorporated by reference herein in their entirety. In addition, the Examples presented below, in Sections 17, 18, 26 and 27 each provide additional assays for the testing of a compound's antiviral capability.

In vivo assays may also be utilized to test, for example, the antiviral activity of the peptides of the invention. To test for anti-HIV activity, for example, the in vivo model described in Barnett et al. (Barnett, S. W. et al., 1994, Science 266:642-646) may be used.

Additionally, anti-RSV activity can be assayed in vivo via well known mouse models. For example, RSV can be administered intranasally to mice of various inbred strains. Virus replicates in lungs of all strains, but the highest titers are obtained in P/N, C57L/N and DBA/2N mice. Infection of BALB/c mice produces an asymptomatic bronchiolitis characterized by lymphocytic infiltrates and pulmonary virus titers of 10⁴to 10⁵pfu/g of lung tissue (Taylor, G. et al., 1984, Infect. Immun. 43:649-655).

Cotton rat models of RSV are also well known. Virus replicates to high titer in the nose and lungs of the cotton rat but produces few if any signs of inflammation.

5.6. Uses of the Peptides of the Invention

The peptides of the invention may be utilized as antifusogenic or antiviral compounds, or as compounds which modulate intracellular processes involving coiled coil peptide structures. Further, such peptides may be used to identify agents which exhibit antifusogenic, antiviral or intracellular modulatory activity. Still further, the peptides of the invention may be utilized as organism or viral type/subtype-specific diagnostic tools.

The antifusogenic capability of the peptides of the invention may additionally be utilized to inhibit or treat/ameliorate symptoms caused by processes involving membrane fusion events. Such events may include, for example, virus transmission via cell-cell fusion, abnormal neurotransmitter exchange via cell-fusion, and sperm-egg fusion. Further, the peptides of the invention may be used to inhibit free viral, such as retroviral, particularly HIV, transmission to uninfected cells wherein such viral infection involves membrane fusion events or involves fusion of a viral structure with a cell membrane. Among the intracellular disorders involving coiled coil peptides structures which may be ameliorated by the peptides of the invention are disorders involving, for example, bacterial toxins.

With respect to antiviral activity, the viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to all strains of the viruses listed above, in Tables V through VII, and IX through XIV.

These viruses include, for example, human retroviruses, particularly HIV-1 and HIV-2 and the human T-lymphocyte viruses (HTLV-I and II). The non-human retroviruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to bovine leukosis virus, feline sarcoma and leukemia viruses, simian immunodeficiency, sarcoma and leukemia viruses, and sheep progress pneumonia viruses.

Non retroviral viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to human respiratory syncytial virus, canine distemper virus, newcastle disease virus, human parainfluenza virus, influenza viruses, measles viruses, Epstein-Barr viruses, hepatitis B viruses, and simian Mason-Pfizer viruses.

Non enveloped viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to picornaviruses such as polio viruses, hepatitis A virus, enterovirus, echoviruses and coxsackie viruses, papovaviruses such as papilloma virus, parvoviruses, adenoviruses and reoviruses.

As discussed more fully, below, in Section 5.5.1 and in the Example presented, below, in Section 8, DP107, DP178, DP107 analog and DP178 analog peptides form non-covalent protein-protein interactions which are required for normal activity of the virus. Thus, the peptides of the invention may also be utilized as components in assays for the identification of compounds that interfere with such protein-protein interactions and may, therefore, act as antiviral agents. These assays are discussed, below, in Section 5.5.1.

As demonstrated in the Example presented below in Section 6, the antiviral activity of the peptides of the invention may show a pronounced type and subtype specificity, i.e., specific peptides may be effective in inhibiting the activity of only specific viruses. This feature of the invention presents many advantages. One such advantage, for example, lies in the field of diagnostics, wherein one can use the antiviral specificity of the peptide of the invention to ascertain the identity of a viral isolate. With respect to HIV, one may easily determine whether a viral isolate consists of an HIV-1 or HIV-2 strain. For example, uninfected CD-4⁺ cells may be co-infected with an isolate which has been identified as containing HIV the DP178 (SEQ ID:1) peptide, after which the retroviral activity of cell supernatants may be assayed, using, for example, the techniques described above in Section 5.2. Those isolates whose retroviral activity is completely or nearly completely inhibited contain HIV-1. Those isolates whose viral activity is unchanged or only reduced by a small amount, may be considered to not contain HIV-1. Such an isolate may then be treated with one or more of the other DP178 peptides of the invention, and subsequently be tested for its viral activity in order to determine the identify of the viral isolate. The DP107 and DP178 analogs of the invention may also be utilized in a diagnostic capacity specific to the type and subtype of virus or organism in which the specific peptide sequence is found. A diagnostic procedure as described, above, for DP178, may be used in conjunction with the DP107/DP178 analog of interest.

5.5.1. Screening Assays

As demonstrated in the Example presented in Section 8, below, DP107 and DP178 portions of the TM protein gp41 form non-covalent protein-protein interactions. As is also demonstrated, the maintenance of such interactions is necessary for normal viral infectivity. Thus, compounds which bind DP107, bind DP178, and/or act to disrupt normal DP107/DP178 protein-protein interactions may act as antifusogenic, antiviral or cellular modulatory agents. Described below are assays for the identification of such compounds. Note that, while, for ease and clarity of discussion, DP107 and DP178 peptides will be used as components of the assays described, but it is to be understood that any of the DP107 analog or DP178 analog peptides described, above, in Sections 5.1 through 5.3 may also be utilized as part of these screens for compounds.

Compounds which may be tested for an ability to bind DP107, DP178, and/or disrupt DP107/DP178 interactions, and which therefore, potentially represent antifusogenic, antiviral or intracellular modulatory compounds, include, but are not limited to, peptides made of D- and/or L-configuration amino acids (in, for example, the form of random peptide libraries; see Lam, K. S. et al., 1991, Nature 354:82-84), phosphopeptides (in, for example, the form of random or partially degenerate, directed phosphopeptide libraries; see, for example, Songyang, Z. et al., 1993, Cell 72:767-778), antibodies, and small organic or inorganic molecules. Synthetic compounds, natural products, and other sources of potentially effective materials may be screened in a variety of ways, as described in this Section.

The compounds, antibodies, or other molecules identified may be tested, for example, for an ability to inhibit cell fusion or viral activity, utilizing, for example, assays such as those described, above, in Section 5.5.

Among the peptides which may be tested are soluble peptides comprising DP107 and/or DP178 domains, and peptides comprising DP107 and/or DP178 domains having one or more mutations within one or both of the domains, such as the M41-P peptide described, below, in the Example presented in Section 8, which contains a isoleucine to proline mutation within the DP178 sequence.

In one embodiment of such screening methods is a method for identifying a compound to be tested for antiviral ability comprising:

- (a) exposing at least one compound to a peptide comprising a DP107 peptide for a time sufficient to allow binding of the compound to the DP107 peptide;
- (b) removing non-bound compounds; and
- (c) determining the presence of the compound bound to the DP107 peptide, thereby identifying an agent to be tested for antiviral ability.

In a second embodiment of such screening methods is a method for identifying a compound to be tested for antiviral ability comprising:

- (a) exposing at least one compound to a peptide comprising a DP178 peptide for a time sufficient to allow binding of the compound to the DP178 peptide;
- (b) removing non-bound compounds; and
- (c) determining the presence of the compound bound to the DP178 peptide, thereby identifying an agent to be tested for antiviral ability.

One method utilizing these types of approaches that may be pursued in the isolation of such DP107-binding or DP178-binding compounds is an assay which would include the attachment of either the DP107 or the DP178 peptide to a solid matrix, such as, for example, agarose or plastic beads, microtiter plate wells, petri dishes, or membranes composed of, for example, nylon or nitrocellulose. In such an assay system, either the DP107 or DP178 protein may be anchored onto a solid surface, and the compound, or test substance, which is not anchored, is labeled, either directly or indirectly. In practice, microtiter plates are conveniently utilized. The anchored component may be immobilized by non-covalent or covalent attachments. Non-covalent attachment may be accomplished simply by coating the solid surface with a solution of the protein and drying.

Alternatively, an immobilized antibody, preferably a monoclonal antibody, specific for the protein may be used to anchor the protein to the solid surface. The surfaces may be prepared in advance and stored.

In order to conduct the assay, the labeled compound is added to the coated surface containing the anchored DP107 or DP178 peptide. After the reaction is complete, unreacted components are removed (e.g., by washing) under conditions such that any complexes formed will remain immobilized on the solid surface. The detection of complexes anchored on the solid surface can be accomplished in a number of ways. Where the compound is pre-labeled, the detection of label immobilized on the surface indicates that complexes were formed. Where the labeled component is not pre-labeled, an indirect label can be used to detect complexes anchored on the surface; e.g., using a labeled antibody specific for the compound (the antibody, in turn, may be directly labeled or indirectly labeled with a labeled anti-Ig antibody).

Alternatively, such an assay can be conducted in a liquid phase, the reaction products separated from unreacted components, and complexes detected; e.g., using an immobilized antibody specific for DP107 or DP178, whichever is appropriate for the given assay, or ab antibody specific for the compound, i.e., the test substance, in order to anchor any complexes formed in solution, and a labeled antibody specific for the other member of the complex to detect anchored complexes.

By utilizing procedures such as this, large numbers of types of molecules may be simultaneously screened for DP107 or DP178-binding capability, and thus potential antiviral activity.

Further, compounds may be screened for an ability to inhibit the formation of or, alternatively, disrupt DP107/DP178 complexes. Such compounds may then be tested for antifusogenic, antiviral or intercellular modulatory capability. For ease of description, DP107 and DP178 will be referred to as “binding partners.” Compounds that disrupt such interactions may exhibit antiviral activity. Such compounds may include, but are not limited to molecules such as antibodies, peptides, and the like described above.

The basic principle of the assay systems used to identify compounds that interfere with the interaction between the DP107 and DP178 peptides involves preparing a reaction mixture containing peptides under conditions and for a time sufficient to allow the two peptides to interact and bind, thus forming a complex. In order to test a compound for disruptive activity, the reaction is conducted in the presence and absence of the test compound, i.e., the test compound may be initially included in the reaction mixture, or added at a time subsequent to the addition of one of the binding partners; controls are incubated-without the test compound or with a placebo. The formation of any complexes between the binding partners is then detected. The formation of a complex in the control reaction, but not in the reaction mixture containing the test compound indicates that the compound interferes with the interaction of the DP107 and DP178 peptides.

The assay for compounds that interfere with the interaction of the binding partners can be conducted in a heterogeneous or homogeneous format. Heterogeneous assays involve anchoring one of the binding partners onto a solid phase and detecting complexes anchored on the solid phase at the end of the reaction. In homogeneous assays, the entire reaction is carried out in a liquid phase. In either approach, the order of addition of reactants can be varied to obtain different information about the compounds being tested. For example, test compounds that interfere with the interaction between the binding partners, e.g., by competition, can be identified by conducting the reaction in the presence of the test substance; i.e., by adding the test substance to the reaction mixture prior to or simultaneously with the binding partners. On the other hand, test compounds that disrupt preformed complexes, e.g. compounds with higher binding constants that displace one of the binding partners from the complex, can be tested by adding the test compound to the reaction mixture after complexes have been formed. The various formats are described briefly below.

In a heterogeneous assay system, one binding partner, e.g., either the DP107 or DP178 peptide, is anchored onto a solid surface, and its binding partner, which is not anchored, is labeled, either directly or indirectly. In practice, microtiter plates are conveniently utilized. The anchored species may be immobilized by non-covalent or covalent attachments. Non-covalent attachment may be accomplished simply by coating the solid surface with a solution of the protein and drying. Alternatively, an immobilized antibody specific for the protein may be used to anchor the protein to the solid surface. The surfaces may be prepared in advance and stored.

In order to conduct the assay, the binding partner of the immobilized species is added to the coated surface with or without the test compound. After the reaction is complete, unreacted components are removed (e.g., by washing) and any complexes formed will remain immobilized on the solid surface. The detection of complexes anchored on the solid surface can be accomplished in a number of ways. Where the binding partner was pre-labeled, the detection of label immobilized on the surface indicates that complexes were formed. Where the binding partner is not pre-labeled, an indirect label can be used to detect complexes anchored on the surface; e.g., using a labeled antibody specific for the binding partner (the antibody, in turn, may be directly labeled or indirectly labeled with a labeled anti-Ig antibody). Depending upon the order of addition of reaction components, test compounds which inhibit complex formation or which disrupt preformed complexes can be detected.

Alternatively, the reaction can be conducted in a liquid phase in the presence or absence of the test compound, the reaction products separated from unreacted components, and complexes detected; e.g., using an immobilized antibody specific for one binding partner to anchor any complexes formed in solution, and a labeled antibody specific for the other binding partner to detect anchored complexes. Again, depending upon the order of addition of reactants to the liquid phase, test compounds which inhibit complex or which disrupt preformed complexes can be identified.

In an alternate embodiment of the invention, a homogeneous assay can be used. In this approach, a preformed complex of the DP107 and DP178 peptides is prepared in which one of the binding partners is labeled, but the signal generated by the label is quenched due to complex formation (see, e.g., U.S. Pat. No. 4,109,496 by Rubenstein which utilizes this approach for immunoassays). The addition of a test substance that competes with and displaces one of the binding partners from the preformed complex will result in the generation of a signal above background. In this way, test substances which disrupt DP-107/DP-178 protein-protein interaction can be identified.

In an alternative screening assay, test compounds may be assayed for the their ability to disrupt a DP178/DP107 interaction, as measured immunometrically using an antibody specifically reactive to a DP107/DP178 complex (i.e., an antibody that recognizes neither DP107 nor DP178 individually). Such an assay acts as a competition assay, and is based on techniques well known to those of skill in the art.

The above competition assay may be described, by way of example, and not by way of limitation, by using the DP178 and M41Δ178 peptides and by assaying test compounds for the disruption of the complexes formed by these two peptides by immunometrically visualizing DP178/M41Δ178 complexes via the human recombinant Fab, Fab-d, as described, below, in the Example presented in Section 8. M41Δ178 is a maltose binding fusion protein containing a gp41 region having its DP178 domain deleted, and is described, below, in the Example presented in Section 8.

Utilizing such an assay, M41Δ178 may be immobilized onto solid supports such as microtiter wells. A series of dilutions of a test compound may then be added to each M41Δ178-containing well in the presence of a constant concentration of DP-178 peptide. After incubation, at, for example, room temperature for one hour, unbound DP-178 and test compound are removed from the wells and wells are then incubated with the DP178/M41Δ178-specific Fab-d antibody. After incubation and washing, unbound Fab-d is removed from the plates and bound Fab-d is quantitated. A no-inhibitor control should also be conducted. Test compounds showing an ability to disrupt DP178/M41Δ178 complex formation are identified by their concentration-dependent decrease in the level of Fab-d binding.

A variation of such an assay may be utilized to perform a rapid, high-throughput binding assay which is capable of directly measuring DP178 binding to M41Δ178 for the determination of binding constants of the ligand of inhibitory constants for competitors of DP178 binding.

Such an assay takes advantage of accepted radioligand and receptor binding principles. (See, for example, Yamamura, H. I. et al., 1985, “Neurotransmitter Receptor Binding”, 2nd ed., Raven Press, NY.) As above, M41Δ178 is immobilized onto a solid support such as a microtiter well. DP178 binding to M41Δ178 is then quantitated by measuring the fraction of DP178 that is bound as ¹²⁵I-DP178 and calculating the total amount bound using a value for specific activity (dpm/μg peptide) determined for each labeled DP178 preparation. Specific binding to M41Δ178 is defined as the difference of the binding of the labeled DP178 preparation in the microtiter wells (totals) and the binding in identical wells containing, in addition, excess unlabeled DP178 (nonspecifics).

5.5 Pharmaceutical Formations, Dosages and Modes of Administration

The peptides of the invention may be administered using techniques well known to those in the art. Preferably, agents are formulated and administered systemically. Techniques for formulation and administration may be found in “Remington's Pharmaceutical Sciences”, 18th ed., 1990, Mack Publishing Co., Easton, Pa. Suitable routes may include oral, rectal, transmucosal, or intestinal administration; parenteral delivery, including intramuscular, subcutaneous, intramedullary injections, as well as, intrathecal, direct intraventricular, intravenous, intraperitoneal, intranasal, or intraocular injections, just to name a few. For injection, the agents of the invention may be formulated in aqueous solutions, preferably in physiologically compatible buffers such as Hanks' solution, Ringer's solution, or physiological saline buffer. For such transmucosal administration, penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are generally known in the art.

In instances wherein intracellular administration of the peptides of the invention or other inhibitory agents is preferred, techniques well known to those of ordinary skill in the art may be utilized. For example, such agents may be encapsulated into liposomes, then administered as described above. Liposomes are spherical lipid bilayers with aqueous interiors. All molecules present in an aqueous solution at the time of liposome formation are incorporated into the aqueous interior. The liposomal contents are both protected from the external microenvironment and, because liposomes fuse with cell membranes, are effectively delivered into the cell cytoplasm. Additionally, due to their hydrophobicity, when small molecules are to be administered, direct intracellular administration may be achieved.

Nucleotide sequences encoding the peptides of the invention which are to be intracellularly administered may be expressed in cells of interest, using techniques well known to those of skill in the art. For example, expression vectors derived from viruses such as retroviruses, vaccinia viruses, adeno-associated viruses, herpes viruses, or bovine papilloma viruses, may be used for delivery and expression of such nucleotide sequences into the targeted cell population. Methods for the construction of such vectors and expression constructs are well known. See, for example, Sambrook et al., 1989, Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Press, Cold Spring Harbor N.Y., and Ausubel et al., 1989, Current Protocols in Molecular Biology, Greene Publishing Associates and Wiley Interscience, NY.

With respect to HIV, peptides of the invention, particularly DP107 and DP178, may be used as therapeutics in the treatment of AIDS. In addition, the peptides may be used as prophylactic measures in previously uninfected individuals after acute exposure to an HIV virus. Examples of such prophylactic use of the peptides may include, but are not limited to, prevention of virus transmission from mother to infant and other settings where the likelihood of HIV transmission exists, such as, for example, accidents in health care settings wherein workers are exposed to HIV-containing blood products. The successful use of such treatments do not rely upon the generation of a host immune response directed against such peptides.

Effective dosages of the peptides of the invention to be administered may be determined through procedures well known to those in the art which address such parameters as biological half-life, bioavailability, and toxicity. Given the data presented below in Section 6, DP178, for example, may prove efficacious in vivo at doses required to achieve circulating levels of about 1 to about 10 ng per ml of peptide.

A therapeutically effective dose refers to that amount of the compound sufficient to result in amelioration of symptoms or a prolongation of survival in a patient. Toxicity and therapeutic efficacy of such compounds can be determined by standard pharmaceutical procedures in cell cultures or experimental animals, e.g., for determining the LD₅₀(the dose lethal to 50% of the population) and the ED50 (the dose therapeutically effective in 50% of the population). The dose ratio between toxic and therapeutic effects is the therapeutic index and it can be expressed as the ratio LD₅₀/ED₅₀. Compounds which exhibit large therapeutic indices are preferred. The data obtained from these cell culture assays and animal studies can be used in formulating a range of dosage for use in humans. The dosage of such compounds lies preferably within a range of circulating concentrations that include the ED50 with little or no toxicity. The dosage may vary within this range depending upon the dosage form employed and the route of administration utilized. For any compound used in the method of the invention, the therapeutically effective dose can be estimated initially from cell culture assays. A dose may be formulated in animal models to achieve a circulating plasma concentration range that includes the IC₅₀(e.g., the concentration of the test compound which achieves a half-maximal inhibition of the fusogenic event, such as a half-maximal inhibition of viral infection relative to the amount of the event in the absence of the test compound) as determined in cell culture. Such information can be used to more accurately determine useful doses in humans. Levels in plasma may be measured, for example, by high performance liquid chromatography (HPLC).

The peptides of the invention may, further, serve the role of a prophylactic vaccine, wherein the host raises antibodies against the peptides of the invention, which then serve to neutralize HIV viruses by, for example, inhibiting further HIV infection.

Administration of the peptides of the invention as a prophylactic vaccine, therefore, would comprise administering to a host a concentration of peptides effective in raising an immune response which is sufficient to neutralize HIV, by, for example, inhibiting HIV ability to infect cells. The exact concentration will depend upon the specific peptide to be administered, but may be determined by using standard techniques for assaying the development of an immune response which are well known to those of ordinary skill in the art. The peptides to be used as vaccines are usually administered intramuscularly.

The peptides may be formulated with a suitable adjuvant in order to enhance the immunological response. Such adjuvants may include, but are not limited to mineral gels such as aluminum hydroxide; surface active substances such as lysolecithin, pluronic polyols, polyanions; other peptides; oil emulsions; and potentially useful human adjuvants such as BCG and Corynebacterium parvum. Many methods may be used to introduce the vaccine formulations described here. These methods include but are not limited to oral, intradermal, intramuscular, intraperitoneal, intravenous, subcutaneous, and intranasal routes.

Alternatively, an effective concentration of polyclonal or monoclonal antibodies raised against the peptides of the invention may be administered to a host so that no uninfected cells become infected by HIV. The exact concentration of such antibodies will vary according to each specific antibody preparation, but may be determined using standard techniques well known to those of ordinary skill in the art. Administration of the antibodies may be accomplished using a variety of techniques, including, but not limited to those described in this section.

For all such treatments described above, the exact formulation, route of administration and dosage can be chosen by the individual physician in view of the patient's condition. (See e.g. Fingl et al., 1975, in “The Pharmacological Basis of Therapeutics”, Ch. 1 p1).

It should be noted that the attending physician would know how to and when to terminate, interrupt, or adjust administration due to toxicity, or to organ dysfunctions. Conversely, the attending physician would also know to adjust treatment to higher levels if the clinical response were not adequate (precluding toxicity). The magnitude of an administrated dose in the management of the oncogenic disorder of interest will vary with the severity of the condition to be treated and the route of administration. The dose and perhaps dose frequency, will also vary according to the age, body weight, and response of the individual patient. A program comparable to that discussed above may be used in veterinary medicine.

Use of pharmaceutically acceptable carriers to formulate the compounds herein disclosed for the practice of the invention into dosages suitable for systemic administration is within the scope of the invention. With proper choice of carrier and suitable manufacturing practice, the compositions of the present invention, in particular, those formulated as solutions, may be administered parenterally, such as by intravenous injection. The compounds can be formulated readily using pharmaceutically acceptable carriers well known in the art into dosages suitable for oral administration. Such carriers enable the compounds of the invention to be formulated as tablets, pills, capsules, liquids, gels, syrups, slurries, suspensions and the like, for oral ingestion by a patient to be treated.

Pharmaceutical compositions suitable for use in the present invention include compositions wherein the active ingredients are contained in an effective amount to achieve its intended purpose. Determination of the effective amounts is well within the capability of those skilled in the art, especially in light of the detailed disclosure provided herein.

In addition to the active ingredients, these pharmaceutical compositions may contain suitable pharmaceutically acceptable carriers comprising excipients and auxiliaries which facilitate processing of the active compounds into preparations which can be used pharmaceutically. The preparations formulated for oral administration may be in the form of tablets, dragees, capsules, or solutions.

The pharmaceutical compositions of the present invention may be manufactured in a manner that is itself known, e.g., by means of conventional mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping or lyophilizing processes.

Pharmaceutical formulations for parenteral administration include aqueous solutions of the active compounds in water-soluble form. Additionally, suspensions of the active compounds may be prepared as appropriate oily injection suspensions. Suitable lipophilic solvents or vehicles include fatty oils such as sesame oil, or synthetic fatty acid esters, such as ethyl oleate or triglycerides, or liposomes. Aqueous injection suspensions may contain substances which increase the viscosity of the suspension, such as sodium carboxymethyl cellulose, sorbitol, or dextran. Optionally, the suspension may also contain suitable stabilizers or agents which increase the solubility of the compounds to allow for the preparation of highly concentrated solutions.

Pharmaceutical preparations for oral use can be obtained by combining the active compounds with solid excipient, optionally grinding a resulting mixture, and processing the mixture of granules, after adding suitable auxiliaries, if desired, to obtain tablets or dragee cores. Suitable excipients are, in particular, fillers such as sugars, including lactose, sucrose, mannitol, or sorbitol; cellulose preparations such as, for example, maize starch, wheat starch, rice starch, potato starch, gelatin, gum tragacanth, methyl cellulose, hydroxypropylmethyl-cellulose, sodium carboxymethylcellulose, and/or polyvinylpyrrolidone (PVP). If desired, disintegrating agents may be added, such as the cross-linked polyvinyl pyrrolidone, agar, or alginic acid or a salt thereof such as sodium alginate.

Dragee cores are provided with suitable coatings. For this purpose, concentrated sugar solutions may be used, which may optionally contain gum arabic, talc, polyvinyl pyrrolidone, carbopol gel, polyethylene glycol, and/or titanium dioxide, lacquer solutions, and suitable organic solvents or solvent mixtures. Dyestuffs or pigments may be added to the tablets or dragee coatings for identification or to characterize different combinations of active compound doses.

Pharmaceutical preparations which can be used orally include push-fit capsules made of gelatin, as well as soft, sealed capsules made of gelatin and a plasticizer, such as glycerol or sorbitol. The push-fit capsules can contain the active ingredients in admixture with filler such as lactose, binders such as starches, and/or lubricants such as talc or magnesium stearate and, optionally, stabilizers. In soft capsules, the active compounds may be dissolved or suspended in suitable liquids, such as fatty oils, liquid paraffin, or liquid polyethylene glycols. In addition, stabilizers may be added.

6. EXAMPLE
DP178 (SEQ ID:1) is a Potent Inhibitor of HIV-1 Infection

In this example, DP178 (SEQ ID:1) is shown to be a potent inhibitor of HIV-1 mediated CD-4⁺ cell-cell fusion and infection by cell free virus. In the fusion assay, this peptide completely blocks virus induced syncytia formation at concentrations of from 1-10 ng/ml. In the infectivity assay the inhibitory concentration is somewhat higher, blocking infection at 90 ng/ml. It is further shown that DP178 (SEQ ID:1) shows that the antiviral activity of DP178 (SEQ ID:1) is highly specific for HIV-1. Additionally, a synthetic peptide, DP-185 (SEQ ID:3), representing a HIV-1-derived DP178 homolog is also found to block HIV-1-mediated syncytia formation.

6.1. Materials and Methods
6.1.1. Peptide Synthesis

Peptides were synthesized using Fast Moc chemistry on an Applied Biosystems Model 431A peptide synthesizer. Generally, unless otherwise noted, the peptides contained amidated carboxy termini and acetylated amino termini. Amidated peptides were prepared using Rink resin (Advanced Chemtech) while peptides containing free carboxy termini were synthesized on Wang (p-alkoxy-benzyl-alcohol) resin (Bachem). First residues were double coupled to the appropriate resin and subsequent residues were single coupled. Each coupling step was followed by acetic anhydride capping. Peptides were cleaved from the resin by treatment with trifluoracetic acid (TFA) (10 ml), H₂O (0.5 ml), thioanisole (0.5 ml), ethanedithiol (0.25 ml), and crystalline phenol (0.75 g). Purification was carried out by reverse phase HPLC.

Approximately 50 mg samples of crude peptide were chromatographed on a Waters Delta Pak C18 column (19 mm×30 cm, 15μ spherical) with a linear gradient;

H₂O/acetonitrile 0.1% TFA. Lyophilized peptides were stored desiccated and peptide solutions were made in water at about 1 mg/ml. Electrospray mass spectrometry yielded the following results: DP178 (SEQ ID:1):4491.87 (calculated 4491.94); DP-180 (SEQ ID:2):4491.45 (calculated 4491.94); DP-185 (SEQ ID:3):not done (calculated 4546.97).

6.1.2. Virus

The HIV-1_LAIvirus was obtained from R. Gallo (Popovic, M. et al., 1984, Science 224:497-508) and propagated in CEM cells cultured in RPMI 1640 containing 10% fetal calf serum. Supernatant from the infected CEM cells was passed through a 0.2μm filter and the infectious titer estimated in a microinfectivity assay using the AA5 cell line to support virus replication. For this purpose, 25 μl of serial diluted virus was added to 75 μl AA5 cells at a concentration of 2×10⁵/ml in a 96-well microtitre plate. Each virus dilution was tested in triplicate. Cells were cultured for eight days by addition of fresh medium every other day. On day 8 post infection, supernatant samples were tested for virus replication as evidenced by reverse transcriptase activity released to the supernatant. The TCID₅₀was calculated according to the Reed and Muench formula (Reed, L. J. et al., 1938, Am. J. Hyg. 27:493-497). The titer of the HIV-1_LAIand HIV-1_MNstocks used for these studies, as measured on the AA5 cell line, was approximately 1.4×10⁶and 3.8×10⁴TCID₅₀/ml, respectively.

6.1.3. Cell Fusion Assay

Approximately 7×10⁴Molt cells were incubated with 1×10⁴CEM cells chronically infected with the HIV-1_LAIvirus in 96-well plates (one-half area cluster plates; Costar, Cambridge, Mass.) in a final volume of 100 μl culture medium as previously described (Matthews, T. J. et al., 1987, Proc. Natl. Acad. Sci. USA 84: 5424-5428). Peptide inhibitors were added in a volume of 10 μl and the cell mixtures were incubated for 24 hr. at 37° C. At that time, multinucleated giant cells were estimated by microscopic examination at a 40× magnification which allowed visualization of the entire well in a single field.

6.1.4. Cell Free Virus Infection Assay

Synthetic peptides were incubated at 37° C. with either 247 TCID₅₀(for experiment depicted in FIG. 2), or 62 TCID₅₀(for experiment depicted in FIG. 3) units of HIV-1_LAIvirus or 25 TCID₅₀units of HIV-2_NIHZand CEM CD4⁺ cells at peptide concentrations of 0, 0.04, 0.4, 4.0, and 40 μg/ml for 7 days. The resulting reverse transcriptase (RT) activity in counts per minute was determined using the assay described, below, in Section 6.1.5. See, Reed, L. J. et al., 1938, Am. J. Hyg. 27: 493-497 for an explanation of TCID₅₀calculations.

6.1.5. Reverse Transcriptase Assay

The micro-reverse transcriptase (RT) assay was adapted from Goff et al. (Goff, S. et al., 1981, J. Virol. 38:239-248) and Willey et al. (Willey, R. et al., 1988, J. Virol. 62:139-147). Supernatants from virus/cell cultures are adjusted to 1% Triton-X100. A 10 μl sample of supernatant was added to 50 μl of RT cocktail in a 96-well U-bottom microtitre plate and the samples incubated at 37° C. for 90 min. The RT cocktail contained 75 mM KCl, 2 mM dithiothreitol, 5 mM MgCl₂, 5 μg/ml poly A (Pharmacia, cat. No. 27-4110-01), 0.25 units/ml oligo dT (Pharmacia, cat. No. 27-7858-01), 0.05% NP40, 50 mM Tris-HCl, pH 7.8, 0.5 μM non-radioactive dTTP, and 10 μCi/ml ³²P-dTTP (Amersham, cat. No. PB.10167).

After the incubation period, 40 μl of reaction mixture was applied to a Schleicher and Schuell (S+S) NA45 membrane (or DE81 paper) saturated in 2×SSC buffer (0.3M NaCl and 0.003M sodium citrate) held in a S+S Minifold over one sheet of GB003 (S+S) filter paper, with partial vacuum applied. Each well of the minifold was washed four times with 200 μl 2×SSC, under full vacuum. The membrane was removed from the minifold and washed 2 more times in a pyrex dish with an excess of 2×SSC. Finally, the membrane was drained on absorbent paper, placed on Whatman #3 paper, covered with Saran wrap, and exposed to film overnight at −70° C.

6.2. Results
6.2.1. Peptide Inhibition of Infected Cell-induced Syncytia Formation

The initial screen for antiviral activity assayed peptides' ability to block syncytium formation induced by overnight co-cultivation of uninfected Molt4 cells with chronically HIV-1 infected CEM cells. The results of several such experiments are presented herein. In the first of these experiments, serial DP178 (SEQ ID:1) peptide concentrations between 10 μg/ml and 12.5 ng/ml were tested for blockade of the cell fusion process. For these experiments, CEM cells chronically infected with either HIV-1_LAI, HIV-1_MN, HIV-1_RF, or HIV-1_SF2virus were cocultivated overnight with uninfected Molt 4 cells. The results (FIG. 4) show that DP178 (SEQ ID:1) afforded complete protection against each of the HIV-1 isolates down to the lowest concentration of DP178 (SEQ ID:1) used. For HIV_LAIinhibition, the lowest concentration tested was 12.5 ng/ml; for all other HIV-1 viruses, the lowest concentration of DP178 (SEQ ID:1) used in this study was 100 ng/ml. A second peptide, DP-180 (SEQ ID:2), containing the same amino acid residues as DP178 (SEQ ID:1) but arranged in a random order exhibited no evidence of anti-fusogenic activity even at the high concentration of 40 μg/ml (FIG. 4). These observations indicate that the inhibitory effect of DP178 (SEQ ID:1) is primary sequence-specific and not related to non-specific peptide/protein interactions. The actual endpoint (i.e., the lowest effective inhibitory concentration) of DP178 inhibitory action is within the range of 1-10 ng/ml.

The next series of experiments involved the preparation and testing of a DP178 (SEQ ID:1) homolog for its ability to inhibit HIV-1-induced syncytia formation. As shown in FIG. 1, the sequence of DP-185 (SEQ ID:3) is slightly different from DP178 (SEQ ID:1) in that its primary sequence is taken from the HIV-1_SF2isolate and contains several amino acid differences relative to DP178 (SEQ ID:1) near the N terminus. As shown in FIG. 4, DP-185 (SEQ ID:3), exhibits inhibitory activity even at 312.5 ng/ml, the lowest concentration tested.

The next series of experiments involved a comparison of DP178 (SEQ ID:1) HIV-1 and HIV-2 inhibitory activity. As shown in FIG. 5, DP178 (SEQ ID:1) blocked HIV-1-mediated syncytia formation at peptide concentrations below 1 ng/ml. DP178 (SEQ ID:1) failed, however, to block HIV-2 mediated syncytia formation at concentrations as high as 10 μg/ml. This striking 4 log selectivity of DP178 (SEQ ID:1) as an inhibitor of HIV-1-mediated cell fusion demonstrates an unexpected HIV-1 specificity in the action of DP178 (SEQ ID:1). DP178 (SEQ ID:1) inhibition of HIV-1-mediated cell fusion, but the peptide's inability to inhibit HIV-2 medicated cell fusion in the same cell type at the concentrations tested provides further evidence for the high degree of selectivity associated with the antiviral action of DP178 (SEQ ID:1).

6.2.2. Peptide Inhibition of Infection by Cell-free Virus

DP178 (SEQ ID:1) was next tested for its ability to block CD-4⁺ CEM cell infection by cell free HIV-1 virus. The results, shown in FIG. 2, are from an experiment in which DP178 (SEQ ID:1) was assayed for its ability to block infection of CEM cells by an HIV-1_LAIisolate. Included in the experiment were three control peptides, DP-116 (SEQ ID:9), DP-125 (SEQ ID:8), and DP-118 (SEQ ID:10). DP-116 (SEQ ID:9) represents a peptide previously shown to be inactive using this assay, and DP-125 (SEQ ID:8; Wild, C. et al., 1992, Proc. Natl. Acad, Sci. USA 89:10,537) and DP-118 (SEQ ID:10) are peptides which have previously been shown to be active in this assay. Each concentration (0, 0.04, 0.4, 4, and 40 μg/ml) of peptide was incubated with 247 TCID₅₀units of HIV-_LAIvirus and CEM cells. After 7 days of culture, cell-free supernatant was tested for the presence of RT activity as a measure of successful infection. The results, shown in FIG. 2, demonstrate that DP178 (SEQ ID:1) inhibited the de novo infection process mediated by the HIV-1 viral isolate at concentrations as low as 90 ng/ml (IC₅₀=90 ng/ml). In contrast, the two positive control peptides, DP-125 (SEQ: ID:8) and DP-118 (SEQ ID:10), had over 60-fold higher IC50 concentrations of approximately 5 μg/ml.

In a separate experiment, the HIV-1 and HIV-2 inhibitory action of DP178 (SEQ ID:1) was tested with CEM cells and either HIV-1_LAIor HIV-2_NIHZ. 62 TCID₅₀HIV-1_LAIor 25 GCID₅₀HIV-2_NIHZwere used in these experiments, and were incubated for 7 days. As may be seen in FIG. 3, DP178 (SEQ ID:1) inhibited HIV-1 infection with an IC50 of about 31 ng/ml. In contrast, DP178 (SEQ ID:1) exhibited a much higher IC50 for HIV-2_NIHZ, thus making DP178 (SEQ ID:1) two logs more potent as a HIV-1 inhibitor than a HIV-2 inhibitor. This finding is consistent with the results of the fusion inhibition assays described, above, in Section 6.2.1, and further supports a significant level of selectivity (i.e., for HIV-1 over HIV-2).

7. EXAMPLE
The HIV-1 Inhibitor, DP178 (SEQ ID:1) is Non-cytotoxic

In this Example, the 36 amino acid synthetic peptide inhibitor DP178 (SEQ ID:1) is shown to be non-cytotoxic to cells in culture, even at the highest peptide concentrations (40 μg/ml) tested.

7.1. Materials and Methods

Cell proliferation and toxicity assay: Approximately 3.8×10⁵CEM cells for each peptide concentration were incubated for 3 days at 37° C. in T25 flasks. Peptides tested were DP178 (SEQ ID:1) and DP-116 (SEQ ID:9), as described in FIG. 1. Peptides were synthesized as described, above, in Section 6.1. The concentrations of each peptide used were 0, 2.5, 10, and 40 μg/ml. Cell counts were taken at incubation times of 0, 24, 48, and 72 hours.

7.2. Results

Whether the potent HIV-1 inhibitor DP178 (SEQ ID:1) exhibited any cytotoxic effects was assessed by assaying the peptide's effects on the proliferation and viability of cells in culture. CEM cells were incubated in the presence of varying concentrations of DP178 (SEQ ID:1), and DP-116 (SEQ ID:9), a peptide previously shown to be ineffective as a HIV inhibitor (Wild, C. et al., 1992, Proc. Natl. Acad. Sci. USA 89:10,537-10,541). Additionally, cells were incubated in the absence of either peptide.

The results of the cytotoxicity study demonstrate that DP178 (SEQ ID:1) exhibits no cytotoxic effects on cells in culture. As can be seen, below, in Table XXIV, even the proliferation and viability characteristics of cells cultured for 3 days in the presence of the highest concentration of DP178 (SEQ ID:1) tested (40 μg/ml) do not significantly differ from the DP-116 (SEQ ID:9) or the no-peptide controls. The cell proliferation data is also represented in graphic form in FIG. 6. As was demonstrated in the Working Example presented above in Section 6, DP178 (SEQ ID:1) completely inhibits HIV-1 mediated syncytia formation at peptide concentrations between 1 and 10 ng/ml, and completely inhibits cell-free viral infection at concentrations of at least 90 ng/ml. Thus, this study demonstrates that even at peptide concentrations greater than 3 log higher than the HIV inhibitory dose, DP178 (SEQ ID:1) exhibits no cytotoxic effects.

TABLE XXIV

% Viability

Peptide
at time (hours)

Peptide
Concentration μg/ml
0
24
48
72

DP178
40
98
97
95
97

(SEQ ID: 1)
10
98
97
98
98

2.5
98
93
96
96

DP116
40
98
95
98
97

(SEQ ID: 9)
10
98
95
93
98

2.5
98
96
98
99

No Peptide
0
98
97
99
98

8. EXAMPLE
The Interaction of DP178 and DP107

Soluble recombinant forms of gp41 used in the example described below provide evidence that the DP178 peptide associates with a distal site on gp41 whose interactive structure is influenced by the DP107 leucine zipper motif. A single mutation disrupting the coiled-coil structure of the leucine zipper domain transformed the soluble recombinant gp41 protein from an inactive to an active inhibitor of HIV-1 fusion. This transformation may result from liberation of the potent DP178 domain from a molecular clasp with the leucine zipper, DP107, determinant. The results also indicate that the anti-HIV activity of various gp41 derivatives (peptides and recombinant proteins) may be due to their ability to form complexes with viral gp41 and interfere with its fusogenic process.

8.1. Materials and Methods
8.1.1. Construction of Fusion Proteins and GP41 Mutants

Construction of fusion proteins and mutants shown in FIG. 7 was accomplished as follows: the DNA sequence corresponding to the extracellular domain of gp41 (540-686) was cloned into the Xmn I site of the expression vector pMal-p2 (New England Biolab) to give M41. The gp41 sequence was amplified from pgtat (Malim et al., 1988, Nature 355: 181-183) by using polymerase chain reaction (PCR) with upstream primer 5′-ATGACGCTGACGGTACAGGCC-3′ (primer A) and downstream primer 5′-TGACTAAGCTTAATACCACAGCCAATTTGTTAT-3′ (primer B). M41-P was constructed by using the T7-Gen in vitro mutagenesis kit from United States Biochemicals (USB) following the supplier's instructions. The mutagenic primer (5′-GGAGCTGCTTGGGGCCCCAGAC-3′) introduces an Ile to Pro mutation in M41 at position 578. M41Δ107, from which the DP-107 region has been deleted, was made using a deletion mutagenic primer 5′-CCAAATCCCCAGGAGCTGCTCGAGCTGCACTATACCAGAC-3′ (primer C) following the USB T7-Gen mutagenesis protocol. M41Δ178, from which the DP-178 region has been deleted, was made by cloning the DNA fragment corresponding to gp41 amino acids 540-642 into the Xmn I site of pMal-p2. Primer A and 5′-ATAGCTTCTAGATTAATTGTTAATTTCTCTGTCCC-3′ (primer D) were used in the PCR with the template pgtat to generate the inserted DNA fragments. M41-P was used as the template with primer A and D in PCR to generate M41-PΔ178. All inserted sequences and mutated residues were checked by restriction enzyme analysis and confirmed by DNA sequencing.

8.1.2. Purification and Characterization of Fusion Proteins

The fusion proteins were purified according to the protocol described in the manufacturer's brochure of protein fusion and purification systems from New England Biolabs (NEB). Fusion proteins (10 ng) were analyzed by electrophoresis on 8% SDS polyacrylamide gels. Western blotting analysis was performed as described by Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual, 2d Ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., Ch. 18, pp. 64-75. An HIV-1 positive serum diluted 1000-fold, or a human Fab derived from repertoire cloning was used to react with the fusion proteins. The second antibody was HRP-conjugated goat antihuman Fab. An ECL Western blotting detection system (Amersham) was used to detect the bound antibody. A detailed protocol for this detection system was provided by the manufacturer. Rainbow molecular weight markers (Amersham) were used to estimate the size of fusion proteins.

8.1.3. Cell Fusion Assays for Anti-HIV Activity

Cell fusion assays were performed as previously described (Matthews et al., 1987, Proc. Natl. Acad. Sci. USA 84: 5424-5481). CEM cells (7×10⁴) were incubated with HIV-1_IIIBchronically infected CEM cells (10⁴) in 96-well flat-bottomed half-area plates (Costar) in 100 μl culture medium. Peptide and fusion proteins at various concentrations in 10 μl culture medium were incubated with the cell mixtures at 37° C. for 24 hours. Multinucleated syncytia were estimated with microscopic examination. Both M41 and M41-P did not show cytotoxicity at the concentrations tested and shown in FIG. 8.

Inhibition of HIV-1 induced cell-cell fusion activity was carried out in the presence of 10 nM DP178 and various concentrations of M41Δ178 or M41-PΔ178 as indicated in FIG. 9. There was no observable syncytia in the presence of 10 nM DP178. No peptide or fusion protein was added in the control samples.

8.1.4. Elisa Analysis of DP178 Binding to the Leucine Zipper Motif of GP41

The amino acid sequence of DP178 used is: YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF. For enzyme linked immunoassay (ELISA), M41Δ178 or M41-PΔ178 (5 μg/ml) in 0.1M NaHCO₃, pH 8.6, were coated on 96 wells Linbro ELISA plates (Flow Lab, Inc.) overnight. Each well was washed three times with distilled water then blocked with 3% bovine serum albumin (BSA) for 2 hours. After blocking, peptides with 0.5% BSA in TBST (40 mM Tris-HCl pH7.5, 150 mM NaCl, 0.05% Tween 20) were added to the ELISA plates and incubated at room temperature for 1 hour. After washing three times with TBST, Fab-d was added at a concentration of 10 ng/ml with 0.5% BSA in TBST. The plates were washed three times with TBST after incubation at room temperature for 1 hour. Horse radish peroxidase (HRP) conjugated goat antihuman Fab antiserum at a 2000 fold dilution in TBST with 0.5% BSA was added to each well and incubated at room temperature for 45 minutes. The plates were then washed four times with TBST. The peroxidase substrate o-phenylene diamine (2.5 mg/ml) and 0.15% H₂O₂were added to develop the color. The reaction was stopped with an equal volume of 4.5 N H₂SO₄after incubation at room temperature for 10 minutes. The optical density of the stopped reaction mixture was measured with a micro plate reader (Molecular Design) at 490 nm. Results are shown in FIG. 10.

8.2. Results
8.2.1. The Expression and Characterization of the Ectodomain of qp41

As a step toward understanding the roles of the two helical regions in gp41 structure and function, the ectodomain of gp41 was expressed as a maltose binding fusion protein (M41) (FIG. 7). The fusogenic peptide sequence at the N-terminal of gp41 was omitted from this recombinant protein and its derivatives to improve solubility. The maltose binding protein facilitated purification of the fusion proteins under relatively mild, non-denaturing conditions. Because the M41 soluble recombinant gp41 was not glycosylated, lacked several regions of the transmembrane protein (i.e., the fusion peptide, the membrane spanning, and the cytoplasmic domains), and was expressed in the absence of gp120, it was not expected to precisely reflect the structure of native gp41 on HIV-1 virions. Nevertheless, purified M41 folded in a manner that preserved certain discontinuous epitopes as evidenced by reactivity with human monoclonal antibodies, 98-6, 126-6, and 50-69, previously shown to bind conformational epitopes on native gp41 expressed in eukaryotic cells (Xu et al., 1991, J. Virol. 65: 4832-4838; Chen, 1994, J. Virol. 68:2002-2010). Thus, at least certain regions of native gp41 defined by these antibodies appear to be reproduced in the recombinant fusion protein M41. Furthermore, M41 reacted with a human recombinant Fab (Fab-d) that recognizes a conformational epitope on gp41 and binds HIV-1 virions as well as HIV-1 infected cells but not uninfected cells as analyzed by FACS. Deletion of either helix motif, i.e., DP107 or DP178, of the M41 fusion protein eliminated reactivity with Fab-d. These results indicate that both helical regions, separated by 60 amino acids in the primary sequence, are required to maintain the Fab-d epitope.

8.2.2. Anti-HIV Activity of the Recombinant Ectodomain of GP41

The wild type M41 fusion protein was tested for anti-HIV-1 activity. As explained, supra, synthetic peptides corresponding to the leucine zipper (DP107) and the C-terminal putative helix (DP178) show potent anti-HIV activity. Despite inclusion of both these regions, the recombinant M41 protein did not affect HIV-1 induced membrane fusion at concentrations as high as 50 μM (Table XXV, below).

TABLE XXV

DISRUPTION OF THE LEUCINE ZIPPER OF

GP41 FREES THE ANTI-HIV MOTIF

DP107
DP178
M41
M41-P
M41-PΔ178

Cell fusion
1 μM
1 nM
>50 μM
83 nM
>50 μM

(IC₉₀)

Fab-D
—
—
3.5 × 10⁻⁹
2.5 × 10⁻⁸
—

binding (k_D)

HIV infectiv-
1 μM
80 nM
>16 μM
66 nM
>8 μM

ity (IC₉₀)

¹The affinity constants of Fab-d binding to the fusion proteins were determined using a protocol described by B. Friguet et al., 1985, J. Immunol. Method. 77:305-319.

— = No detectable binding of Fab-d to the fusion proteins.

Antiviral Infectivity Assays. 20 μl of serially diluted virus stock was incubated for 60 minutes at ambient temperature with 20 μl of the indicatedconcentration of purified recombinant fusion protein in RPMI 1640 containing 10% fetal bovine serum and antibiotics in a 96-well microteter plate. 20 μl of CEM4 cells at 6 × 10⁵cells/ml were added to each well, and cultures were incubated at 37° C. in a humidified CO₂incubator. Cells were cultured for 9 days by the

# addition of fresh medium every 2 to 3 days. On days 5, 7, and 9 postinfection, supernatant samples were assayed for reverse transcriptase (RT) activity, as described below, to minitor viral replication. The 50% tissue culture infectious dose (TCID₅₀) was calculated for each condition according to the formula of Reed & Muench, 1937, Am. J. Hyg. 27:493-497. RT activity was determined by a modification of the published methods of Goff et al., 1981, J. Virol. 38:239-248 and Willey et al.,

# 1988, J. Virol. 62:139-147 as described in Chen et al., 1993, AIDS Res. Human Retroviruses 9:1079-1086.

Surprisingly, a single amino acid substitution, proline in place of isoleucine in the middle of the leucine zipper motif, yielded a fusion protein (M41-P) which did exhibit antiviral activity (Table XXV and FIG. 8). As seen in Table XXV, M41-P blocked syncytia formation by 90% at approximately 85 nM and neutralized HIV-1_IIIBinfection by 90% at approximately 70 nM concentrations. The anti-HIV-1 activity of M41-P appeared to be mediated by the C-terminal helical sequence since deletion of that region from M41-P yielded an inactive fusion protein, M41-PΔ178 (Table XXV). This interpretation was reinforced by experiments demonstrating that a truncated fusion protein lacking the DP178 sequence, M41Δ178, abrogated the potent anti-fusion activity of the DP178 peptide in a concentration-dependent manner (FIG. 9). The same truncated fusion protein containing the proline mutation disrupting the leucine zipper, M41-PΔ178, was not active in similar competition experiments (FIG. 9). The results indicate that the DP178 peptide associates with a second site on gp41 whose interactive structure is dependent on a wild type leucine zipper sequence. A similar interaction may occur within the wild type fusion protein, M41, and act to form an intramolecular clasp which sequesters the DP178 region, making it unavailable for anti-viral activity.

A specific association between these two domains is also indicated by other human monoclonal Fab-d studies. For example, Fab-d failed to bind either the DP178 peptide or the fusion protein M41Δ178, but its epitope was reconstituted by simply mixing these two reagents together (FIG. 10). Again, the proline mutation in the leucine zipper domain of the fusion protein, M41-PΔ178, failed to reconstitute the epitope in similar mixing experiments.

9. EXAMPLE
Method for Computer-assisted Identification of DP107-Like and DP178-Like Sequences

A number of known coiled-coil sequences have been well described in the literature and contain heptad repeat positioning for each amino acid. Coiled-coil nomenclature labels each of seven amino acids of a heptad repeat A through G, with amino acids A and D tending to be hydrophobic positions. Amino acids E and G tend to be charged. These four positions (A, D, E, and G) form the amphipathic backbone structure of a monomeric alpha-helix. The backbones of two or more amphipathic helices interact with each other to form di-, tri-, tetrameric, etc., coiled-coil structures. In order to begin to design computer search motifs, a series of well characterized coiled coils were chosen including yeast transcription factor GCN4, Influenza Virus hemagglutinin loop 36, and human proto-oncogenes c-Myc, c-Fos, and c-Jun. For each peptide sequence, a strict homology for the A and D positions, and a list of the amino acids which could be excluded for the B, C, E, F, and G positions (because they are not observed in these positions) was determined. Motifs were tailored to the DP107 and DP178 sequences by deducing the most likely possibilities for heptad positioning of the amino acids of HIV-1 Bru DP-107, which is known to have coiled-coil structure, and HIV-1 Bru DP178, which is still structurally undefined. The analysis of each of the sequences is contained in FIG. 12. For example, the motif for GCN4 was designed as follows:

1. The only amino acids (using standard single letter amino acid codes) found in the A or D positions of GCN4 were [LMNV].
2. All amino acids were found at B, C, E, F, and G positions except {CFGIMPTW}.
3. The PESEARCH motif would, therefore, be written as follows:
- [LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)-
- [LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)-
- [LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)-
- [LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)
  
  Translating or reading the motif: “at the first A position either L, M, N, or V must occur; at positions B and C (the next two positions) accept everything except C, F, G, I, M, P, T, or W; at the D position either L, M, N, or V must occur; at positions E, F, and G (the next 3 positions) accept everything except C, F, G, I, M, P, T, or W.” This statement is contained four times in a 28-mer motif and five times in a 35-mer motif. The basic motif key then would be: [LMNV]-{CFGIMPTW}. The motif keys for the remaining well described coiled-coil sequences are summarized in FIG. 12.

The motif design for DP107 and DP178 was slightly different than the 28-mer model sequences described above due to the fact that heptad repeat positions are not defined and the peptides are both longer than 28 residues. FIG. 13 illustrates several possible sequence alignments for both DP107 and DP178 and also includes motif designs based on 28-mer, 35-mer, and full-length peptides. Notice that only slight differences occur in the motifs as the peptides are lengthened. Generally, lengthening the base peptide results in a less stringent motif. This is very useful in broadening the possibilities for identifying DP107-or DP-178-like primary amino acid sequences referred to in this document as “hits”.

In addition to making highly specific motifs for each type peptide sequence to be searched, it is also possible to make “hybrid” motifs. These motifs are made by “crossing” two or more very stringent motifs to make a new search algorithm which will find not only both “parent” motif sequences but also any peptide sequences which have similarities to one, the other, or both “parents”. For example, in FIG. 14 the “parent” sequence of GCN4 is crossed with each of the possible “parent” motifs of DP-107. Now the hybrid motif must contain all of the amino acids found in the A and D positions of both parents, and exclude all of the amino acids not found in either parent at the other positions. The resulting hybrid from crossing GCN4 or [LMNV] {CFGIMPTW} and DP107 (28-mer with the first L in the D position) or [ILQT] {CDFIMPST}, is [ILMNQTV] {CFIMPT}. Notice that now only two basic hybrid motifs exist which cover both framing possibilities, as well as all peptide lengths of the parent DP-107 molecule. FIG. 15 represents the “hybridizations” of GCN4 with DP-178. FIG. 16 represents the “hybridizations” of DP107 and DP178. It is important to keep in mind that the represented motifs, both parent and hybrid, are motif keys and not the depiction of the full-length motif needed to actually do the computer search.

Hybridizations can be performed on any combination of two or more motifs. FIG. 17 summarizes several three-motif hybridizations including GCN4, DP107 (both frames), and DP178 (also both frames). Notice that the resulting motifs are now becoming much more similar to each other. In fact, the first and third hybrid motifs are actually subsets of the second and fourth hybrid motifs respectively. This means that the first and third hybrid motifs are slightly more stringent than the second and fourth. It should also be noted that with only minor changes in these four motifs, or by hybridizing them, a single motif could be obtained which would find all of the sequences. However, it should be remembered that stringency is also reduced. Finally, the most broad-spectrum and least-stringent hybrid motif is described in FIG. 18 which summarizes the hybridization of GCN4, DP107 (both frames), DP178 (both frames), c-Fos, c-Jun, c-Myc, and Flu loop 36.

A special set of motifs was designed based on the fact that DP-178 is located only approximately ten amino acids upstream of the transmembrane spanning region of gp41 and just C-terminal to a proline which separates DP107 and DP178. It has been postulated that DP178 may be an amphipathic helix when membrane associated, and that the proline might aid in the initiation of the helix formation. The same arrangement was observed in Respiratory Syncytial Virus; however, the DP178-like region in this virus also had a leucine zipper just C-terminal to the proline. Therefore, N-terminal proline-leucine zipper motifs were designed to analyze whether any other viruses might contain this same pattern. The motifs are summarized in FIG. 19.

The PC/Gene protein database contains 5879 viral amino acid sequences (library file PVIRUSES; CD-ROM release 11.0). Of these, 1092 are viral enveloped or glycoprotein sequences (library file PVIRUSE1). Tables V through XIV contain lists of protein sequence names and motif hit locations for all the motifs searched.

10. EXAMPLE
Computer-assisted Identification of DP107 and DP178-Like Sequences in Human Immunodrficiency Virus

FIG. 20 represents search results for HIV-1 BRU isolate gp41 (PC/Gene protein sequence PENV_HV1BR). Notice that the hybrid motif which crosses DP-107 and DP-178 (named 107x178x4; the same motif as found in FIG. 16 found three hits including amino acids 550-599, 636-688, and 796-823. These areas include DP-107 plus eight N-terminal and four C-terminal amino acids; DP178 plus seven N-terminal and ten C-terminal amino acids; and an area inside the transmembrane region (cytoplasmic). FIG. 20 also contains the results obtained from searching with the motif named ALLMOTI5, for which the key is found in FIG. 17 .({CDGHP} {CFP}x5). This motif also found three hits including DP107 (amino acids 510-599), DP178 (615-717), and a cytoplasmic region (772-841). These hits overlap the hits found by the motif 107x178x4 with considerable additional sequences on both the amino and carboxy termini. This is not surprising in that 107x178x4 is a subset of the ALLMOTI5 hybrid motif. Importantly, even though the stringency of ALLMOTI5 is considerably less than 107x178x4, it still selectively identifies the DP107 and DP178 regions of gp41 shown to contain sequences for inhibitory peptides of HIV-1. The results of these two motif searches are summarized in Table V under the PC/Gene protein sequence name PENV HV1BR. The proline-leucine zipper motifs also gave several hits in HIV-1 BRU including 503-525 which is at the very C-terminus of gp120, just upstream of the cleavage site (P7LZIPC and P12LZIPC); and 735-768 in the cytoplasmic domain of gp41 (P23LZIPC). These results are found in Tables VIII, IX, and X under the same sequence name as mentioned above. Notice that the only area of HIV-1 BRU which is predicted by the Lupas algorithm to contain a coiled-coil region, is from amino acids 635-670. This begins eight amino acids N-terminal to the start and ends eight amino acids N-terminal to the end of DP178. DP107, despite the fact that it is a known coiled coil, is not predicted to contain a coiled-coil region using the Lupas method.

11. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences in Human Respiratory Syncytial Virus

FIG. 21 represents search results for Human Respiratory Syncytial Virus (RSV; Strain A2) fusion glycoprotein F1 (PC/Gene protein sequence name PVGLF_HRSVA). Motif 107x178x4 finds three hits including amino acids 152-202, 213-243, and 488-515. The arrangement of these hits is similar to what is found in HIV-1 except that the motif finds two regions with similarities to DP-178, one just downstream of what would be called the DP107 region or amino acids 213-243, and one just upstream of the transmembrane region (also similar to DP178) or amino acids 488-515. Motif ALLMOTI5 also finds three areas including amino acids 116-202, 267-302, and 506-549. The proline-leucine zipper motifs also gave several hits including amino acids 205-221 and 265-287 (PILZIPC 265-280, P12LZIPC), and 484-513 (P7LZIPC and P12LZIPC 484-506, P23LZIPC). Notice that the PLZIP motifs also identify regions which share location similarities with DP-178 of HIV-1.

12. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences in Simian Immunodeficiency Virus

Motif hits for Simian immunodeficiency Virus gp41(AGM3 isolate; PC/Gene protein sequence name PENV_SIVAG) are shown in FIG. 22. Motif 107x178x4 finds three hits including amino acids 566-593, 597-624, and 703-730. The first two hits only have three amino acids between them and could probably be combined into one hit from 566-624 which would represent a DP107-like hit. Amino acids 703 to 730 would then represent a DP178-like hit. ALLMOTI5 also finds three hits including amino acids 556-628 (DP107-like), 651-699 (DP178-like), and 808-852 which represents the transmembrane spanning region. SIV also has one region from 655-692 with a high propensity to form a coiled coil as predicted by the Lupas algorithm. Both 107x178x4 and ALLMOTI5 motifs find the same region. SIV does not have any PLZIP motif hits in gp41.

The identification of DP178/DP107 analogs for a second SIV isolate (MM251) is demonstrated in the Example presented, below, in Section 19.

13. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178 Like Sequences in Canine Distemper Virus

Canine Distemper Virus (strain Onderstepoort) fusion glycoprotein F1 (PC/Gene Protein sequence name PVGLF_CDVO) has regions similar to Human RSV which are predicted to be DP107-like and DP178-like (FIG. 23). Motif 107x178x4 highlights one area just C-terminal to the fusion peptide at amino acids 252-293. Amino acids 252-286 are also predicted to be coiled coil using the Lupas algorithm. Almost 100 amino acids C-terminal to the first region is a DP178-like area at residues 340-367. ALLMOTI5 highlights three areas of interest including: amino acids 228-297, which completely overlaps both the Lupas prediction and the DP107-like 107x178x4 hit; residues 340-381, which overlaps the second 107x178x4 hit; and amino acids 568-602, which is DP178-like in that it is located just N-terminal to the transmembrane region. It also overlaps another region (residues 570-602) predicted by the Lupas method to have a high propensity to form a coiled coil. Several PLZIP motifs successfully identified areas of interest including P6 and P12LZIPC which highlight residues 336-357 and 336-361 respectively; P1 and P12LZIPC which find residues 398-414; and P12 and P23LZIPC which find residues 562-589 and 562-592 respectively.

14. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences in Newcastle Disease Virus

FIG. 24 shows the motif hits found in Newcastle Disease Virus (strain Australia-Victoria/32; PC Gene protein sequence name PVGLF_NDVA). Motif 107x178x4 finds two areas including a DP107-like hit at amino acids 151-178 and a DP178-like hit at residues 426-512. ALLMOTI5 finds three areas including residues 117-182, 231-272, and 426-512. The hits from 426-512 include a region which is predicted by the Lupas method to have a high coiled-coil propensity (460-503). The PLZIP motifs identify only one region of interest at amino acids 273-289 (P1 and 12LZIPC).

15. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences in Human Parainfluenza Virus

Both motifs 107x178x4 and ALLMOTI5 exhibit DP107-like hits in the same region, 115-182 and 117-182 respectively, of Human Parainfluenza Virus (strain NIH 47885; PC/Gene protein sequence name PVGLF_p13H4; (FIG. 25). In addition, the two motifs have a DP178-like hit just slightly C-terminal at amino acids 207-241. Both motifs also have DP178-like hits nearer the transmembrane region including amino acids 457-497 and 462-512 respectively. Several PLZIP motif hits are also observed including 283-303 (P5LZIPC), 283-310 (P12LZIPC), 453-474 (P6LZIPC), and 453-481 (P23LZIPC). The Lupas algorithm predicts that amino acids 122-176 may have a propensity to form a coiled-coil.

16. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences of influenza A Virus

FIG. 26 illustrates the Lupas prediction for a coiled coil in Influenza A Virus (strain A/Aichi/2/68) at residues 379-436, as well as the motif hits for 107x178x4 at amino acids 387-453, and for ALLMOTI5 at residues 380-456. Residues 383-471 (38-125 of HA2) were shown by Carr and Kim to be an extended coiled coil when under acidic pH (Carr and Kim, 1993, Cell 73: 823-832). The Lupas algorithm predicts a coiled-coil at residues 379-436. All three methods successfully predicted the region shown to actually have coiled-coil structure; however, ALLMOTI5 predicted the greatest portion of the 88 residue stretch.

17. EXAMPLE
Potential Respiratory Syncytial Virus DP178/DP107 Analogs: CD and Antiviral Characterization

In the Example presented herein, respiratory syncytial virus (RSV) peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 11, above, were tested for anti-RSV activity. Additionally, circular dichroism (CD) structural analyses were conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that several of these peptides exhibit a substantial helical character.

17.1 Materials and Methods

Structural analyses: The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptides were synthesized according to the methods described, above, in Section 6.1. Peptide concentrations were determined from A₂₈₀using Edlehoch's method (1967, Biochemistry 6:1948).

Anti-RSV antiviral activity assays: The assay utilized herein tested the ability of the peptides to disrupt the ability of HEp2 cells acutely infected with RSV (i.e., cells which are infected with a multiplicity of infection of greater than 2) to fuse and cause syncytial formation on a monolayer of uninfected an uninfected line of Hep-2 cells. The lower the observed level of fusion, the greater the antiviral activity of the peptide was determined to be.

Uninfected confluent monolayers of Hep-2 cells were grown in microtiter wells in 3% EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 3%, antibiotics (penicillin/streptomycin; Bio Whittaker Cat. No. 17-602E) added at 1%, and glutamine added at 1%.

To prepare Hep2 cells for addition to uninfected cells, cultures of acutely infected Hep2 cells were washed with DPBS (Dulbecco's Phosphate Buffered Saline w/o calcium or magnesium; Bio Whittaker Cat. No. 17-512F) and cell monolayers were removed with Versene (1:5000; Gibco Life Technologies Cat. No. 15040-017). The cells were spun 10 minutes and resuspended in 3% FBS. Cell counts were performed using a hemacytometer. Persistent cells were added to the uninfected Hep-2 cells.

The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Hep-2 cells, then adding peptides (at the dilutions described below) in 3% EMEM, and 100 acutely RSV-infected Hep2 cells per well. Wells were then incubated at 37° C. for 48 hours.

After incubation, cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of either Crystal Violet stain or XTT. With respect to Crystal Violet, approximately 50 μl 0.25% Crystal Violet stain in methanol were added to each well. The wells were rinsed immediately, to remove excess stain, and were allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.

With respect to XTT (2,3-bis[2-Methoxy-4-nitro-5-sulfophenyl]-2H-tetrazolium-5-carboxyanilide inner salt), 50 μl XTT (1 mg/ml in RPMI buffered with 100 mM HEPES, pH 7.2-7.4, plus 5% DMSO) were added to each well. The OD_450/690was measured (after blanking against growth medium without cells or reagents, and against reagents) according to standard procedures.

Peptides: The peptides characterized in the study presented herein were:

1) peptides T-142 to T-155 and T-575, as shown in FIG. 27A, and peptides T-22 to T-27, T-68, T-334 and T-371 to T-375 and T-575, as shown in FIG. 27B;
2) peptides T-120 to T-141 and T-576, as shown in FIG. 27B, and peptides T-12, T-13, T-15, T-19, T-28 to T-30, T-66, T-69, T-70 and T-576, as shown in FIG. 27D; and
3) peptides T-67 and T-104 to T-119 and T-384, as shown in FIG. 28A, and peptides T-71, T-613 to T-617, T-662 to T-676 and T-730, as shown in FIG. 28B.

The peptides of group 1 represent portions of the RSV F2 protein DP178/107-like region. The peptides of group 2 represent portions of the RSV F1 protein DP107-like region. The peptides of groups 3 represent portions of the RSV F1 protein DP178-like region.

Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used. The IC₅₀data for each peptide represents the average of several experiments conducted utilizing that peptide.

17.2 Results

The data summarized in FIGS. 27A-B and 28A-B represent antiviral and structural information obtained from peptides derived from the RSV F2 DP178/DP107-like F2 region (FIGS. 27A-B), the RSV F1DP-107-like region (FIG. 27C-D) and the RSV DP178-like F2 region (FIGS. 28A-B).

As shown in FIGS. 27A-D, a number of the RSV DP178/DP107-like peptides exhibited a detectable level of antiviral activity. Peptides from the RSV DP178/DP107-like F2 region (FIGS. 27A-B), for example, T-142 to T-145 and T-334 purfied peptides, exhibited detectable levels of antiviral activity, as evidenced by their IC₅₀values. Further, a number of RSV F1DP107-like peptides (FIGS. 27C-D) exhibited a sizable level of antiviral activity as purified peptides, including, for example, peptides T-124 to T-127, T-131, T-135 and T-137 to T-139, as demonstrated by their low IC₅₀values. In addition, CD analysis FIGS. 27A, 27C) reveals that many of the peptides exhibit some detectable level of helical structure.

The results summarized in FIGS. 28A-B demonstrate that a number of DP178-like purified peptides exhibit a range of potent anti-viral activity. These peptides include, for example, T-67, T-104, T-105 and T-107 to T-119, as listed in FIG. 28A, and T-665 to T-669 and T-671 to T-673, as listed in FIG. 28B. In addition, some of the DP178-like peptides exhibited some level of helicity.

Thus, the computer assisted searches described, hereinabove, successfully identified viral peptide domains that represent highly promising anti-RSV antiviral compounds.

18. EXAMPLE
Potential Human Parainfluenza Virus Type 3 DP178/DP107 Analogs: CD and Antiviral Characterization

In the Example presented herein, human parainfluenza virus type 3 (HPIV3) peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 15, above, were tested for anti-HPIV3 activity. Additionally, circular dichroism (CD) structural analyses were conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that several of these peptides exhibit a substantial helical character.

18.1 Materials and Methods

Structural analyses: Structural analyses consisted of circular dichroism (CD) studies. The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptide concentrations were determined from A₂₈₀using Edlehoch's method (1967, Biochemistry 6:1948).

Anti-HPIV3 antiviral activity assays: The assay utilized herein tested the ability of the peptides to disrupt the ability of Hep2 cells chronically infected with HPIV3 to fuse and cause syncytial formation on a monolayer of an uninfected line of CV-1W cells. The more potent the lower the observed level of fusion, the greater the antiviral activity of the peptide.

Uninfected confluent monolayers of CV-1W cells were grown in microtiter wells in 3% EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 3%, antibiotics/antimycotics (Gibco BRL Life Technologies Cat. No. 15040-017) added at 1%, and glutamine added at 1%.

To prepare Hep2 cells for addition to uninfected cells, cultures of chronically infected Hep2 cells were washed with DPBS (Dulbecco's Phosphate Buffered Saline w/o calcium or magnesium; Bio Whittaker Cat. No. 17-512F) and cell monolayers were removed with Versene (1:5000; Gibco Life Technologies Cat. No. 15040-017). The cells were spun 10 minutes and resuspended in 3% FBS. Cell counts were performed using a hemacytometer. Persistent cells were added to the uninfected CV-1W cells.

The antiviral assay was conducted by, first, removing all media from the wells containing uninfected CV-1W cells, then adding peptides (at the dilutions described below) in 3% EMEM, and 500 chronically HPIV3-infected Hep2 cells per well. Wells were then incubated at 37° C. for 24 hours.

On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.

Alternatively, instead of Crystal Violet analysis, cells were assayed with XTT, as described, above, in Section 17.1.

Peptides: The peptides characterized in the study presented herein were:

1) Peptides 157 to 188, as shown in FIG. 29A, and peptides T-38 to T-40, T-42 to T-46 and T-582, as shown in FIG. 29B. These peptides are derived from the DP107 region of the HPIV3 F1 fusion protein (represented by HPF3 107, as shown in FIG. 29A); and
2) Peptides 189 to 210, as shown in FIG. 30A, and T-269, T-626, T-383 and T-577 to T-579, as shown in FIG. 30B. These peptides are primarily derived from the DP178 region of the HPIV3 F1 fusion protein (represented by HPF3 178, as shown in FIG. 30A). Peptide T-626 contains two mutated amino acid resides (represented by a shaded background). Additionally, peptide T-577 represents F1 amino acids 65-100, T-578 represents F1 amino acids 207-242 and T-579 represents F1 amino acids 273-309.

Each peptide was tested at 2-fold serial dilutions ranging from 500 μg/ml to approximately 500 ng/ml. For each of the assays, a well containing no peptide was also used.

18.2 Results

The data summarized in FIGS. 29A-B and 30A-B represent antiviral and structural information obtained from peptides derived from the HPIV3 fusion protein DP107-like region (FIGS. 29A-C) and the HPIV3 fusion protein DP178-like region (FIGS. 30A-B).

As shown in FIG. 29A-B, a number of the HPIV3 DP107-like peptides exhibited potent levels of antiviral activity. These peptides include, for example, peptides T-40, T-172 to T-175, T-178, T-184 and T-185.

CD analysis reveals that a number of the peptides exhibit detectable to substantial level of helical structure.

The results summarized in FIGS. 30A-B demonstrate that a number of the DP178-like peptides tested exhibit a range of anti-viral activity. These peptides include, for example, peptides 194 to 211, as evidenced by their low IC₅₀values. In fact, peptides 201 to 205 exhibit IC₅₀values in the nanogram/ml range. In addition, many of the DP178-like peptides exhibited some level of helicity.

Thus, the computer assisted searches described, hereinabove, have successfully identified viral peptide domains that represent highly promising anti-HPIV3 antiviral compounds.

19. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Simian Immodefeficiency Virus

FIG. 31 represents search results for SIV isolate MM251 (PC/Gene® protein sequence PENV_SIVM2). Both 107×178×4 and ALLMOTI5 search motifs identified two regions with similarities to DP107 and/or DP178.

The peptide regions found by 107x178x4 were located at amino acid residues 156-215 and 277-289. The peptide regions found by ALLMOTI5 were located at amino acid residues 156-219 and 245-286. Both motifs, therefore, identify similar regions.

Interestingly, the first SIV peptide region (i.e., from amino acid residue 156 to approximately amino acid residue 219) correlates with a DP107 region, while the second region identified (i.e., from approximately amino acid residue 245 to approximately amino acid residue 289) correlates with the DP178 region of HIV. In fact, an alignment of SIV isolate MM251 and HIV isolate BRU, followed by a selection of the best peptide matches for HIV DP107 and DP178, reveals that the best matches are found within the peptide regions identified by the 107x178x4 and ALLMOTI5 search motifs.

It should be noted that a potential coiled-coil region at amino acid residues 242-282 is predicted by the Lupas program. This is similar to the observation in HIV in which the coiled-coil is predicted by the Lupas program to be in the DP178 rather than in the DP107 region. It is possible, therefore, that SIV may be similar to HIV in that it may contain a coiled-coil structure in the DP107 region, despite such a structure being missed by the Lupas algorithm. Likewise, it may be that the region corresponding to a DP178 analog in SIV may exhibit an undefined structure, despite the Lupas program's prediction of a coiled-coil structure.

20. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Epstein-Barr Virus

The results presented herein describe the identification of DP178/DP107 analogs within two different Epstein-Barr Virus proteins. Epstein-Barr is a human herpes virus which is the causative agent of, for example, infectious mononucleosis (IM), and is also associated with nasopharyngeal carcinomas (NPC), Burkitt's lymphoma and other diseases. The virus predominantly exists in the latent form and is activated by a variety of stimuli.

FIG. 32 depicts the search motif results for the Epstein-Barr Virus (Strain B95-8; PC/Gene® protein sequence PVGLB_EBV) glycoprotein gp110 precursor (gp115). The 107x178x4 motif identified two regions of interest, namely the regions covered by amino acid residues 95-122 and 631-658. One PZIP region was identified at amino acid residue 732-752 which is most likely a cytoplasmic region of the protein. The Lupas algorithm predicts a coiled-coil structure for amino acids 657-684. No ALLMOTI5 regions were identified.

FIG. 33 depicts the search motif results for the Zebra (or EB1) trans-activator protein (BZLF1) of the above-identified Epstein-Barr virus. This protein is a transcription factor which represents the primary mediator of viral reactivation. It is a member of the b-ZIP family of transcription factors and shares significant homology with the basic DNA-binding and dimerization domains of the cellular oncogenes c-fos and C/EBP. The Zebra protein functions as a homodimer.

Search results demonstrate that the Zebra protein exhibits a single region which is predicted to be either of DP107 or DP178 similarity, and is found between the known DNA binding and dimerization regions of the protein. Specifically, this region is located at amino acid residues 193-220, as shown in FIG. 33. The Lupas program predicted no coiled-coil regions.

21. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Measles Virus

FIG. 34 illustrates the motif search results for the fusion protein F1 of measles virus, strain Edmonston (PC Gene® protein sequence PVGLF_MEASE), successfully identifying DP178/DP107 analogs.

The 107x178x4 motif identifies a single region at amino acid residues 228-262. The ALLMOTI5 search motif identifies three regions, including amino acid residues 116-184, 228-269 and 452-500. Three regions containing proline residues followed by a leucine zipper-like sequence were found beginning at proline residues 214, 286 and 451.

The Lupas program identified two regions it predicted had potential for coiled-coil structure, which include amino acid residues 141-172 and 444-483.

22. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Hepatitis B Virus

FIG. 35 depicts the results of a PZIP motif search conducted on the Hepatitis B virus subtype AYW. Two regions of interest within the major surface antigen precursor S protein were identified. The first lies just C-terminal to the proposed fusion peptide of the major surface antigen (Hbs) which is found at amino acid residues 174-191. The second region is located at amino acid residues 233-267. The Lupas program predicts no coiled-coil repeat regions.

In order to test the potential anti-HBV antiviral activity of these D178/DP107 analog regions, peptides derived from area around the analog regions are synthesized, as shown in FIGS. 52A-B. These peptides represent one amino acid peptide “walks” through the putative DP178/DP107 analog regions. The peptides are synthesized according to standard Fmoc chemistry on Rinkamide MBHA resins to provide for carboxy terminal blockade (Chang, C. D. and Meinhofer, J., 1978, Int. J. Pept. Protein Res. 11:246-249; Fields, G. B. and Noble, R. L., 1990, Int. J. Pept. Protein Res. 35:161-214). Following complete synthesis, the peptide amino-terminus is blocked through automated acetylation and the peptide is cleaved with trifluoroacetic acid (TFA) and the appropriate scavengers (King, D. S. et al., 1990, Int. J. Pept. Res. 36:255-266). After cleavage, the peptide is precipitated with ether and dried under vacuum for 24 hours.

The anti-HBV activity of the peptides is tested by utilizing standard assays to determine the test peptide concentration required to cause an acceptable (e.g., 90%) decrease in the amount of viral progeny formed by cells exposed to an HBV viral inoculum. Candidate antivial peptides are further characterized in model systems such as wood chuck tissue culture and animal systems, prior to testing on humans.

23. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Simian Mason-Pfizer Monkey Virus

The results depicted herein illustrate the results of search motifs conducted on the Simian Mason-Pfizer monkey virus. The motifs reveal DP178/DP107 analogs within the enveloped (TM) protein GP20, as shown in FIG. 36.

The 107x178x4 motifs identifies a region at amino acid residues 422-470. The ALLMOTI5 finds a region at amino acid residues 408-474. The Lupas program predicted a coiled-coil structure a amino acids 424-459.

24. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Bacterial Proteins

The results presented herein demonstrate the identification of DP178/DP107 analogs corresponding to sequences present in proteins of a variety of bacterial species.

FIG. 37 depicts the search motif results for the Pseudomonas aeruginosa fimbrial protein (Pilin). Two regions were identified by motifs 107x178x4 and ALLMOTI5. The regions located at amino acid residues 30-67 and 80-144 were identified by the 107x178x4 motif. The regions at amino acid residues 30-68 and 80-125 were identified by the ALLMOTI5.

FIG. 38 depicts the search motif results for the Pseudomonas gonorrhoeae fimbrial protein (Pilin). A single region was identified by both the 107x178x4 and the ALLMOTI5 motifs. The region located at amino acid residues 66-97 was identified by the 107x178x⁴motif. The region located at amino acid residues 66-125 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.

FIG. 39 depicts the search motif results for the Hemophilus Influenza fimbrial protein (Pilin). A single region was identified by both the 107x178x4 and the ALLMOTI5 motifs. The region located at amino acid residues 102-129 was identified by the 107x178x4 motif. The region located at amino acid residues 102-148 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.

FIG. 40 depicts the search motif results for the Staphylococcus aureus toxic shock syndrome Hemophilus Influenza fimbrial protein (Pilin). A single region was identified by both the 107x178x4 and the ALLMOTI5 motifs. The region located at amino acid residues 102-129 was identified by the 107x178x4 motif. The region located at amino acid residues 102-148 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.

FIG. 41 summarizes the motif search results conducted on the Staphylococcus aureus enterotoxin Type E protein. These results demonstrate the successful identification of DP178/DP107 analogs corresponding to peptide sequences within this protein, as described below.

The ALLMOTI5 motif identified a region at amino acid residues 22-27. The 107x178x4 motif identified two regions, with the first at amino acid residues 26-69 and the second at 88-115. A P12LZIPC motif search identified two regions, at amino acid residues 163-181 and 230-250.

The Lupas program predicted a region with a high propensity for coiling at amino acid residues 25-54. This sequence is completely contained within the first region identified by both ALLMOTI5 and 107x178x4 motifs.

FIG. 42 depicts the search motif results conducted on a second Staphylococcus aureus toxin, enterotoxin A. Two regions were identified by the ALLMOTI5 motif, at amino acid residues 22-70 and amino acid residues 164-205. The 107x178x4 motif found two regions, the first at amino acid residues 26-69 and the second at amino acid residues 165-192. A P23LZIPC motif search revealed a region at amino acid residues 216-250. No coiled-coil regions were predicted by the Lupas program.

FIG. 43 shows the motif search results conducted on the E. coli heat labile enterotoxin A protein, demonstrating that identification of DP178/DP107 analogs corresponding to peptides located within this protein. Two regions were identified by the ALLMOTI5 motif, with the first residing at amino acid residues 55-115, and the second residing at amino acid residues 216-254. The 107x178x4 motif identified a single region at amino acid residues 78-105. No coiled-coil regions were predicted by the Lupas program.

25. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs Within Various Human Proteins

The results presented herein demonstrate the identification of DP178/DP107 analogs corresponding to peptide sequences present within several different human proteins.

FIG. 44 illustrates the search motif results conducted on the human c-fos oncoprotein. The ALLMOTI5 motif identified a single region at amino acid residues 155-193. The 107x178x4 motif identified one region at amino acid residues 162-193. The Lupas program predicted a region at amino acid residues 148-201 to have coiled-coil structure.

FIG. 45 illustrates the search motif results conducted on the human lupus KU autoantigen protein P70. The ALLMOTI5 motif identified a single region at amino acid residues 229-280. The 107x178x4 motif identified one region at amino acid residues 235-292. The Lupas program predicted a region at amino acid residues 232-267 to have coiled-coil structure.

FIG. 46 illustrates the search motif results conducted on the human zinc finger protein 10. The ALLMOTI5 motif identified a single region at amino acid residues 29-81. The 107x178x4 motif identified one region at amino acid residues 29-56. A P23LZIPC motif search found a single region at amino acid residues 420-457. The Lupas program predicted no coiled-coil regions.

26. EXAMPLE
Potential Measles Virus DP178/DP107 Analogs: CD and Antiviral Characterization

In the Example presented herein, measles (MeV) virus DP178-like peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 21, above, are tested for anti-MeV activity. Additionally, circular dichroism (CD) structural analyses are conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that none of the these peptides exhibit a substantial helical character.

26.1 Materials and Methods

Structural analyses: The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptide concentrations were determined from A₂₈₀using Edlehoch's method (1967, Biochemistry 6:1948).

Anti-MeV antiviral activity syncytial reduction assay: The assay utilized herein tested the ability of the peptides to disrupt the ability of Vero cells acutely infected with MeV (i.e., cells which are infected with a multiplicity of infection of 2-3) to fuse and cause syncytial formation on a monolayer of an uninfected line of Vero cells. The more potent the peptide, the lower the observed level of fusion, the greater the antiviral activity of the peptide.

Uninfected confluent monolayers of Vero cells were grown in microtiter wells in 10% FBS EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 10%, antibiotics/antimycotics (Bio Whittaker Cat. No. 17-602E) added at 1%, and glutamine added at 1%.

To prepare acutely infected Vero cells for addition to the uninfected cells, cultures of acutely infected Vero cells were washed twice with HBSS .(Bio Whittaker Cat. No. 10-543F) and cell monolayers were removed with trypsin (Bio Whittaker Cat. No. 17-161E). Once cells detached, media was added, any remaining clumps of cells were dispersed, and hemacytometer cell counts were performed.

The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Vero cells, then adding peptides (at the dilutions described below) in 10% FBS EMEM, and 50-100 acutely MeV-infected Vero cells per well. Wells were then incubated at 37° C. for a maximum of 18 hours.

On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed twice with water immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.

Anti-MeV antiviral activity plaque reduction assay: The assay utilized herein tested the ability of the peptides to disrupt the ability of MeV to infect permissive, uninfected Vero cells, leading to the infected cells' fusing with uninfected cells to produce syncytia. The lower the observed level of syncytial formation, the greater the antiviral activity of the peptide.

Monolayers of uninfected Vero cells are grown as described above.

The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Vero cells, then adding peptides (at the dilutions described below) in 10% FBS EMEM, and MeV stock virus at a final concentration of 30 plaque forming units (PFU) per well. Wells were then incubated at 37° C. for a minimum of 36 hours and a maximum of 48 hours.

On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed twice with water immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.

Peptides: The peptides characterized in the study presented herein were peptides T-252A0 to T-256A0, T-257B1/C1, and T-258B1 to T-265B0, and T-266A0 to T-268A0, as shown in FIG. 47. These peptides represent a walk through the DP178-like region of the MeV fusion protein.

Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used.

26.2 Results

The data summarized in FIG. 47 represents antiviral and structural information obtained via “peptide walks” through the DP178-like region of the MeV fusion protein.

As shown in FIG. 47, the MeV DP178-like peptides exhibited a range of antiviral activity as crude peptides. Several of these peptides were chosen for purification and further antiviral characterization. The IC₅₀values for such peptides were determined, as shown in FIG. 47, and ranged from 1.35 μg/ml (T-257B1/C1) to 0.072 μg/ml (T-265B1). None of the DP178-like peptides showed, by CD analysis, a detectable level of helicity.

Thus, the computer assisted searches described, hereinabove, as in for example, the Example presented in Section 9, for example, successfully identified viral peptide domains that represent highly promising anti-MeV antiviral compounds.

27. EXAMPLE
Potential SIV DP178/DP107 Analogs: Antiviral Characterization

In the Example presented herein, simian immunodeficiency virus (SIV) DP178-like peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9, 12 and 19, above, were tested for anti-SIV activity. It is demonstrated that several of the identified peptides exhibit potent antiviral capability.

27.1 Materials and Methods

Anti-SIV antiviral assays: The assay utilized herein were as reported in Langolis et al. (Langolis, A. J. et al., 1991, AIDS Research and Human Retroviruses 7:713-720).

Peptides: The peptides characterized in the study presented herein were peptides T-391 to T-400, as shown in FIG. 48. These peptides represent a walk through the DP178-like region of the SIV TM protein.

Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used.

27.2 Results

The data summarized in FIG. 48 represents antiviral information obtained via “peptide walks” through the DP178-like region of the SIV TM protein.

As shown in FIG. 48, peptides T-391 to T-400 were tested and exhibited a potent antiviral activity as crude peptides.

28. EXAMPLE
Anti-Viral Activity of DP107 and DP-178 Peptide Truncations and Mutations

The Example presented in this Section represents a study of the antiviral activity of DP107 and DP178 truncations and mutations. It is demonstrated that several of these DP107 and DP178 modified peptides exhibit substantial antiviral activity.

28.1 Materials and Methods

Anti-HIV assavs: The antiviral assays performed were as those described, above, in Section 6.1. Assays utilized HIV-1/IIIb and/or HIV-2 NIHZ isolates. Purified peptides were used, unless otherwise noted in FIGS. 49A-C.

Peptides: The peptides characterized in the study presented herein were:

- 1) FIGS. 49A-C present peptides derived from the region around and containing the DP178 region of the HIV-1 BRU isolate. Specifically, this region spanned from gp41 amino acid residue 615 to amino acid residue 717. The peptides listed contain truncations of this region and/or mutations which vary from the DP178 sequence amino acid sequence. Further, certain of the peptides have had amino- and/or carboxy-terminal groups either added or removed, as indicated in the figures; and
- 2) FIG. 50. presents peptides which represent truncations of DP107 and/or the gp41 region surrounding the DP107 amino acid sequence of HIV-1 BRU isolate. Certain of the peptides are unblocked or biotinylated, as indicated in the figure.

Blocked peptides contained an acyl N-terminus and an amido C-terminus.

28.2 Results

Anti-HIV antiviral data was obtained with the group 1 DP178-derived peptides listed in FIGS. 49A-C. The full-length, non-mutant DP178 peptide (referred to in FIGS. 49A-C as T20) results shown are for 4 ng/ml.

In FIG. 49A, a number of the DP178 truncations exhibited a high level of antiviral activity, as evidenced by their low IC₅₀values. These include, for example, test peptides T-50, T-624, T-636 to T-641, T-645 to T-650, T-652 to T-654 and T-656. T-50 represents a test peptide which contains a point mutation, as indicated by the residue's shaded background. The HIV-1-derived test peptides exhibited a distinct strain-specific antiviral activity, in that none of the peptides tested on the HIV-2 NIHZ isolate demonstrated appreciable antti-HIV-2 antiviral activity.

Among the peptides listed in FIG. 49B, are test peptides representing the amino (T-4) and carboxy (T-3) terminal halves of DP178 were tested. The amino terminal peptide was not active (IC₅₀>400 μg/ml) whereas the carboxy terminal peptide showed potent antiviral activity (IC₅₀=3 μg/ml). A number of additional test peptides also exhibited a high level of antiviral activity. These included, for example, T-61/T-102, T-217 to T-221, T-235, T-381, T-677, T-377, T-590, T-378, T-591, T-271 to T-272, T-611, T-222 to T-223 and T-60/T-224. Certain of the antiviral peptides contain point mutations and/or amino acid residue additions which vary from the DP178 amino acid sequence.

In FIG. 49C, point mutations and/or amino and/or carboxy-terminal modifications are introduced into the DP178 amino acid sequence itself. As shown in the figure, the majority of the test peptides listed exhibit potent antiviral activity.

Truncations of the DP107 peptide (referred to in IG. 50 as T21) were also produced and tested, as shown in FIG. 50. FIG. 50 also presents data concerning blocked and unblocked peptides which contain additional amino acid residues from the gp41 region in which the DP107 sequence resides. Most of these peptides showed antiviral activity, as evidenced by their low IC₅₀values.

Thus, the results presented in this Section demonstrate that not only do the full length DP107 and DP178 peptides exhibit potent antiviral activity, but truncations and/or mutant versions of these peptides can also possess substantial antiviral character.

29: EXAMPLE
Potential Epstein-Barr DP178/DP107 Analogs: Antiviral Characterization

In the Example presented herein, peptides derived from the Epstein-Barr (EBV) DP-178/DP107 analog region of the Zebra protein identified, above, in the Example presented in Section 20 are described and tested for anti-EBV activity. It is demonstrated that among these peptides are ones which exhibit potential anti-viral activity.

29.1 Materials and Methods

Electrophoretic Mobility Shift Assays (EMSA): Briefly, an EBV Zebra protein was synthesized utilizing SP6 RNA polymerase in vitro transcription and wheat germ in vitro translation systems (Promega Corporation recommendations; Butler, E. T. and Chamberlain, M. J., 1984, J. Biol. Chem. 257:5772; Pelham, H. R. B. and Jackson, R. J., 1976, Eur. J. Biochem. 67:247). The in vitro translated Zebra protein was then preincubated with increasing amounts of peptide up to 250 ng/ml prior to the addition of 10,000 to 20,000 c.p.m. of a ³²P-labeled Zebra response element DNA fragment. After a 20 minute incubation in the presence of the response element, the reaction was analyzed on a 4% non-denaturing polyacrylamide gel, followed by autoradiography, utilizing standard gel-shift procedures. The ability of a test peptide to prevent Zebra homodimer DNA binding was assayed by the peptide's ability to abolish the response element gel migration retardation characteristic of a protein-bound nucleic acid molecule.

Peptides: The peptides characterized in this study represent peptide walks through the region containing, and flanked on both sides by, the DP178/DP107 analog region identified in the Example presented in Section 20, above, and shown as shown in FIG. 33. Specifically, the peptide walks covered the region from amino acid residue 173 to amino acid residue 246 of the EBV Zebra protein.

Each of the tested peptides were analyzed at a range of concentrations, with 150 ng/ml being the lowest concentration at which any of the peptides exerted an inhibitory effect.

29.2 Results

The EBV Zebra protein transcription factor contains a DP178/pP107 analog region, as demonstrated in the Example presented, above, in Section 20. This protein appears to be the primary factor responsible for the reactivation capability of the virus. A method by which the DNA-binding function of the Zebra virus may be abolished may, therefore, represent an effective antiviral technique. In order to identify potential anti-EBV DP178/DP107 peptides, therefore, peptides derived from the region identified in Section 20, above, were tested for their ability to inhibit Zebra protein DNA binding.

The test peptides' ability to inhibit Zebra protein DNA binding was assayed via the EMSA assays described, above, in Section 28.1. The data summarized in FIGS. 51A-B presents the results of EMSA assays of the listed EBV test peptides. These peptides represent one amino acid “walks” through the region containing, and flanked on both sides by, the DP178/DP107 analog region identified in the Example presented in Section 20, above, and shown as shown in FIG. 33. As shown in FIGS. 51A-B, the region from which these peptides are derived lies from EBV Zebra protein amino acid residue 173 to 246. A number of the test peptides which were assayed exhibited an ability to inhibit Zebra protein homodimer DNA binding, including 439, 441, 444 and 445.

Those peptides which exhibit an ability to inhibit Zebra protein DNA binding represent potential anti-EBV antiviral compounds whose ability to inhibit EBV infection can be further characterized.

The present invention is not to be limited in scope by the specific embodiments described which are intended as single illustrations of individual aspects of the invention, and functionally equivalent methods and components are within the scope of the invention. Indeed, various modifications of the invention, in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and accompanying drawings. Such modifications are intended to fall within the scope of the appended claims.

Number	Name	Date	Kind
4659669	Kleid et al.	Apr 1987	A
4707358	Kieff et al.	Nov 1987	A
5116725	Vaughan et al.	May 1992	A
5141867	Ivanoff et al.	Aug 1992	A

Number	Date	Country
0323157	Dec 1988	EP
0 362 927	Apr 1990	EP
WO 8808429	Nov 1988	WO
WO 8902935	Apr 1989	WO
WO 9007119	Jun 1990	WO
WO 9109872	Jul 1991	WO
WO 9200997	Jan 1992	WO
WO 9222654	Dec 1992	WO

	Number	Date	Country
Parent	08470896	Jun 1995	US
Child	08484741		US

	Number	Date	Country
Parent	08360107	Dec 1994	US
Child	08470896		US
Parent	08255208	Jun 1994	US
Child	08360107		US
Parent	08073028	Jun 1993	US
Child	08255208		US

Methods and compositions for inhibition of membrane fusion-associated events, including HIV transmission

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