TREA

Methods and compositions for inhibition of membrane fusion-associated events, including HIV transmission

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Information

  • Patent Grant
  • 6951717
  • Patent Number
    6,951,717
  • Date Filed
    Wednesday, June 7, 1995
    29 years ago
  • Date Issued
    Tuesday, October 4, 2005
    18 years ago
Information
Abstract
Parainfluenza virus types 1 to 4 (PIV1 to PIV4) are important human pathogens that cause upper and lower respiratory tract infections, particularly in infants and children. The claimed invention is directed toward novel methods for the inhibition of parainfluenza virus transmission to a cell involving the administration of synthetic peptide fusion inhibitors. These inhibitors are derived from the parainfluenza virus and vary in length between 16 to 39 amino acids. The peptides were identified by screening for the presence of fusion inhibitory motifs (e.g., ALLMOTI5, 107x178x4, and PLZIP) within the parainfluenza virus genome. A number of peptides were identified and their fusion inhibitory activities ascertained. These peptides should provide useful antiviral agents.
Description
1. INTRODUCTION

The present invention relates, first, to DP178 (SEQ ID NO:1), a peptide corresponding to amino acids 638 to 673 of the HIV-1LAI transmembrane protein (TM) gp41, and portions or analogs of DP178 (SEQ ID NO:1), which exhibit anti-membrane fusion capability, antiviral activity, such as the ability to inhibit HIV transmission to uninfected CD-4+ cells, or an ability to modulate intracellular processes involving coiled-coil peptide structures. Further, the invention relates to the use of DP178 (SEQ ID NO:1) and DP178 portions and/or analogs as antifusogenic or antiviral compounds or as inhibitors of intracellular events involving coiled-coil peptide structures. The present invention also relates to peptides analogous to DP107 (SEQ ID NO:25), a peptide corresponding to amino acids 558 to 595 of the HIV-1LAI transmembrane protein -(TM) gp41, having amino acid sequences present in other viruses, such as enveloped viruses, and/or other organisms, and further relates to the uses of such peptides. These peptides exhibit anti-membrane fusion capability, antiviral activity, or the ability to modulate intracellular processes involving coiled-coil peptide structures. The present invention additionally relates to methods for identifying compounds that disrupt the interaction between DP178 and DP107, and/or between DP107-like and DP178-like peptides. Further, the invention relates to the use of the peptides of the invention as diagnostic agents. For example, a DP178 peptide may be used as an HIV subtype-specific diagnostic. The invention is demonstrated, first, by way of an Example wherein DP178 (SEQ ID:1), and a peptide whose sequence is homologous to DP178 are each shown to be potent, non-cytotoxic inhibitors of HIV-1 transfer to uninfected CD-4+ cells. The invention is further demonstrated by Examples wherein peptides having structural and/or amino acid motif similarity to DP107 and DP178 are identified in a variety of viral and nonviral organisms, and in examples wherein a number of such identified peptides derived from several different viral systems are demonstrated to exhibit antiviral activity.


2. BACKGROUND OF THE INVENTION
2.1 Membrane Fusion Events

Membrane fusion is a ubiquitous cell biological process (for a review, see White, J. M., 1992, Science 258:917-924). Fusion events which mediate cellular housekeeping functions, such as endocytosis, constitutive secretion, and recycling of membrane components, occur continuously in all eukaryotic cells.


Additional fusion events occur in specialized cells. Intracellularly, for example, fusion events are involved in such processes as occur in regulated exocytosis of hormones, enzymes and neurotransmitters. Intercellularly, such fusion events feature prominently in, for example, sperm-egg fusion and myoblast fusion.


Fusion events are also associated with disease states. For example, fusion events are involved in the formation of giant cells during inflammatory reactions, the entry of all enveloped viruses into cells, and, in the case of human immunodeficiency virus (HIV), for example, are responsible for the virally induced cell-cell fusion which leads to cell death.


2.2. The Human Immunodeficiency Virus

The human immunodeficiency virus (HIV) has been implicated as the primary cause of the slowly degenerative immune system disease termed acquired immune deficiency syndrome (AIDS) (Barre-Sinoussi, F. et al., 1983, Science 220:868-870; Gallo, R. et al., 1984, Science 224:500-503). There are at least two distinct types of HIV: HIV-1 (Barre-Sinoussi, F. et al., 1983, Science 220:868-870; Gallo R. et al., 1984, Science 224:500-503) and HIV-2 (Clavel, F. et al., 1986, Science 233:343-346; Guyader, M. et al., 1987, Nature 326:662-669). Further, a large amount of genetic heterogeneity exists within populations of each of these types. Infection of human CD-4+ T-lymphocytes with an HIV virus leads to depletion of the cell type and eventually to opportunistic infections, neurological dysfunctions, neoplastic growth, and ultimately death.


HIV is a member of the lentivirus family of retroviruses (Teich, N. et al., 1984, RNA Tumor Viruses, Weiss, R. et al., eds., CSH-Press, pp. 949-956). Retroviruses are small enveloped viruses that contain a diploid, single-stranded RNA genome, and replicate via a DNA intermediate produced by a virally-encoded reverse transcriptase, an RNA-dependent DNA polymerase (Varmus, H., 1988, Science 240:1427-1439). Other retroviruses include, for example, oncogenic viruses such as human T-cell leukemia viruses (HTLV-I,-II,-III), and feline leukemia virus.


The HIV viral particle consists of a viral core, composed of capsid proteins, that contains the viral RNA genome and those enzymes required for early replicative events. Myristylated Gag protein forms an outer viral shell around the viral core, which is, in turn, surrounded by a lipid membrane enveloped derived from the infected cell membrane. The HIV enveloped surface glycoproteins are synthesized as a single 160 Kd precursor protein which is cleaved by a cellular protease during viral budding into two glycoproteins, gp41 and gp120. gp41 is a transmembrane protein and gp120 is an extracellular protein which remains non-covalently associated with gp4l, possibly in a trimeric or multimeric form (Hammarskjold, M. and Rekosh, D., 1989, Biochem. Biophys. Acta 989:269-280).


HIV is targeted to CD-4+ cells because the CD-4 cell surface protein acts as the cellular receptor for the HIV-1 virus (Dalgleish, A. et al., 1984, Nature 25 312:763-767; Klatzmann et al., 1984, Nature 312:767-768; Maddon et al., 1986, Cell 47:333-348). Viral entry into cells is dependent upon gp120 binding the cellular CD-4+ receptor molecules (McDougal, J. S. et al., 1986, Science 231:382-385; Maddon, P. J. et al., 1986, Cell 47:333-348) and thus explains HIV's tropism for CD-4+ cells, while gp41 anchors the enveloped glycoprotein complex in the viral membrane.


2.3. HIV Treatment

HIV infection is pandemic and HIV associated diseases represent a major world health problem. Although considerable effort is being put into the successful design of effective therapeutics, currently no curative anti-retroviral drugs against AIDS exist. In attempts to develop such drugs, several stages of the HIV life cycle have been considered as targets for therapeutic intervention (Mitsuya, H. et al., 1991, FASEB J. 5:2369-2381). For example, virally encoded reverse transcriptase has been one focus of drug development. A number of reverse-transcriptase-targeted drugs, including 2′,3′-dideoxynucleoside analogs such as AZT, ddI, ddC, and d4T have been developed which have been shown to been active against HIV (Mitsuya, H. et al., 1991, Science 249:1533-1544). While beneficial, these nucleoside analogs are not curative, probably due to the rapid appearance of drug resistant HIV mutants (Lander, B. et al., 1989, Science 243:1731-1734). In addition, the drugs often exhibit toxic side effects such as bone marrow suppression, vomiting, and liver function abnormalities.


Attempts are also being made to develop drugs which can inhibit viral entry into the cell, the earliest stage of HIV infection. Here, the focus has thus far been on CD4, the cell surface receptor for HIV. Recombinant soluble CD4, for example, has been shown to inhibit infection of CD-4+ T-cells by some HIV-1 strains (Smith, D. H. et al., 1987, Science 238:1704-1707). Certain primary HIV-1 isolates, however, are relatively less sensitive to inhibition by recombinant CD-4 (Daar, E. et al., 1990, Proc. Natl. Acad. Sci. USA 87:6574-6579). In addition, recombinant soluble CD-4 clinical trials have produced inconclusive results (Schooley, R. et al., 1990, Ann. Int. Med. 112:247-253; Kahn, J. O. et al., 1990, Ann. Int. Med. 112:254-261; Yarchoan, R. et al., 1989, Proc. Vth Int. Conf. on AIDS, p. 564, MCP 137).


The late stages of HIV replication, which involve crucial virus-specific secondary processing of certain viral proteins, have also been suggested as possible anti-HIV drug targets. Late stage processing is dependent on the activity of a viral protease, and drugs are being developed which inhibit this protease (Erickson, J., 1990, Science 249:527-533). The clinical outcome of these candidate drugs is still in question.


Attention is also being given to the development of vaccines for the treatment of HIV infection. The HIV-1 enveloped proteins (gp160, gp120, gp41) have been shown to be the major antigens for anti-HIV antibodies present in AIDS patients (Barin, et al., 1985, Science 228:1094-1096). Thus far, therefore, these proteins seem to be the most promising candidates to act as antigens for anti-HIV vaccine development. To this end, several groups have begun to use various portions of gp160, gp120, and/or gp41 as immunogenic targets for the host immune system. See for example, Ivanoff, L. et al., U.S. Pat. No. 5,141,867; Saith, G. et al., WO 92/22,654; Shafferman, A., WO 91/09,872; Formoso, C. et al., WO 90/07,119. Clinical results concerning these candidate vaccines, however, still remain far in the future.


Thus, although a great deal of effort is being directed to the design and testing of anti-retroviral drugs, a truly effective, non-toxic treatment is still needed.


3. SUMMARY OF THE INVENTION

The present invention relates, first, to DP178 (SEQ ID:1), a 36-amino acid synthetic peptide corresponding to amino acids 638 to 673 of the transmembrane protein (TM) gp41 from the HIV-1 isolate LAI (HIV-1LAI), which exhibits potent anti-HIV-1 activity. As evidenced by the Example presented below, Section 6, the DP178 (SEQ ID:1) antiviral activity is so high that, on a weight basis, no other known anti-HIV agent is effective at concentrations as low as those at which DP178 (SEQ ID:1) exhibits its inhibitory effects.


The invention further relates to those portions and analogs of DP178 which also show such antiviral activity, and/or show anti-membrane fusion capability, or an ability to modulate intracellular processes involving coiled-coil peptide structures. The term “DP178 analog” refers to a peptide which contains an amino acid sequence corresponding to the DP178 peptide sequence present within the gp41 protein of HIV-L1LAI, but found in viruses and/or organisms other than HIV-1LAI. Such DP178 analog peptides may, therefore, correspond to DP178-like amino acid sequences present in other viruses, such as, for example, enveloped viruses, such as retroviruses other than HIV-1LAI, as well as non-enveloped viruses. Further, such analogous DP178 peptides may also correspond to DP178-like amino acid sequences present in nonviral organisms.


The invention further relates to peptides DP107 (SEQ ID NO:25) analogs. DP107 is a peptide corresponding to amino acids 558-595 of the HIV-1LAI transmembrane protein (TM) gp41. The term “DP107 analog” as used herein refers to a peptide which contains an amino acid sequence corresponding to the DP107 peptide sequence present within the gp41 protein of HIV-1LAI, but found in viruses and organisms other than HIV-1LAI. Such DP107 analog peptides may, therefore, correspond to DP107-like amino acid sequences present in other viruses, such as, for example, enveloped viruses, such as retroviruses other than HIV-1LAI, as well as non-enveloped viruses. Further, such DP107 analog peptides may also correspond to DP107-like amino acid sequences present in nonviral organisms.


Further, the peptides of the invention include DP107 analog and DP178 analog peptides having amino acid sequences recognized or identified by the 107x178x4, ALLMOTI5 and/or PLZIP search motifs described herein.


The peptides of the invention may, for example, exhibit antifusogenic activity, antiviral activity, and/or may have the ability to modulate intracellular processes which involve coiled-coil peptide structures. With respect to the antiviral activity of the peptides of the invention, such an antiviral activity includes, but is not limited to the inhibition of HIV transmission to uninfected CD-4+ cells. Additionally, the antifusogenic capability, antiviral activity or intracellular modulatory activity of the peptides of the invention merely requires the presence of the peptides of the invention, and, specifically, does not require the stimulation of a host immune response directed against such peptides.


The peptides of the invention may be used, for example, as inhibitors of membrane fusion-asociated events, such as, for example, the inhibition of human and non-human retroviral, especially HIV, transmission to uninfected cells. It is further contemplated that the peptides of the invention may be used as modulators of intracellular events involving coiled-coil peptide structures.


The peptides of the invention may, alternatively, be used to identify compounds which may themselves exhibit antifusogenic, antiviral, or intracellular modulatory activity. Additional uses include, for example, the use of the peptides of the invention as organism or viral type and/or subtype-specific diagnostic tools.


The terms “antifusogenic” and “anti-membrane fusion”, as used herein, refer to an agent's ability to inhibit or reduce the level of membrane fusion events between two or more moieties relative to the level of membrane fusion which occurs between said moieties in the absence of the peptide. The moieties may be, for example, cell membranes or viral structures, such as viral envelopes or pili. The term “antiviral”, as used herein, refers to the compound's ability to inhibit viral infection of cells, via, for example, cell-cell fusion or free virus infection. Such infection may involve membrane fusion, as occurs in the case of enveloped viruses, or some other fusion event involving a viral structure and a cellular structure (e.g., such as the fusion of a viral pilus and bacterial membrane during bacterial conjugation).


It is also contemplated that the peptides of the invention may exhibit the ability to modulate intracellular events involving coiled-coil peptide structures. “Modulate”, as used herein, refers to a stimulatory or inhibitory effect on the intracellular process of interest relative to the level or activity of such a process in the absence of a peptide of the invention.


Embodiments of the invention are demonstrated below wherein an extremely low concentration of DP178 (SEQ ID:1), and very low concentrations of a DP178 homolog (SEQ ID:3) are shown to be potent inhibitors of HIV-1 mediated CD-4+ cell-cell fusion (i.e., syncytial formation) and infection of CD-4+ cells by cell-free virus. Further, it is shown that DP178 (SEQ ID:1) is not toxic to cells, even at concentrations 3 logs higher than the inhibitory DP-178 (SEQ ID:1) concentration.


The present invention is based, in part, on the surprising discovery that the DP107 and DP178 domains of the HIV gp41 protein non-covalently complex with each other, and that their interaction is required for the normal infectivity of the virus. This discovery is described in the Example presented, below, in Section 8. The invention, therefore, further relates to methods for identifying antifusogenic, including antiviral, compounds that disrupt the interaction between DP107 and DP178, and/or between DP107-like and DP178-like peptides.


Additional embodiments of the invention (specifically, the Examples presents in Sections 9-16 and 19-25, below) are demonstrated, below, wherein peptides, from a variety of viral and nonviral sources, having structural and/or amino acid motif similarity to DP107 and DP178 are identified, and search motifs for their identification are described.


Further, Examples (in Sections 17, 18, 25-29) are presented wherein a number of the peptides of the invention are demonstrated exhibit substantial antiviral activity or activity predictive of antiviral activity.


3.1. Definitions

Peptides are defined herein as organic compounds comprising two or more amino acids covalently joined by peptide bonds. Peptides may be referred to with respect to the number of constituent amino acids, i.e., a dipeptide contains two amino acid residues, a tripeptide contains three, etc. Peptides containing ten or fewer amino acids may be referred to as oligopeptides, while those with more than ten amino acid residues are polypeptides. Such peptides may also include any of the modifications and additional amino and carboxy groups as are described herein.


Peptide sequences defined herein are represented by one-letter symbols for amino acid residues as follows:

  • A (alanine)
  • R (arginine)
  • N (asparagine)
  • D (aspartic acid)
  • C (cysteine)
  • Q (glutamine)
  • E (glutamic acid)
  • G (glycine)
  • H (histidine)
  • I (isoleucine)
  • L (leucine)
  • K (lysine)
  • M (methionine)
  • F (phenylalanine)
  • P (proline)
  • S (serine)
  • T (threonine)
  • W (tryptophan)
  • Y (tyrosine)
  • V (valine)





4. BRIEF DESCRIPTION OF THE FIGURES

FIG. 1. Amino acid sequence of DP178 (SEQ ID:1) derived from HIVLAI; DP178 homologs derived from HIV-1SF2 (DP-185; SEQ ID:3), HIV-1RF (SEQ ID:4), and HIV-1MN (SEQ ID:5); DP178 homologs derived from amino acid sequences of two prototypic HIV-2 isolates, namely, HIV-2rod (SEQ ID:6) and HIV-2NIHZ (SEQ ID:7); control peptides: DP-180 (SEQ ID:2), a peptide incorporating the amino acid residues of DP178 in a scrambled sequence; DP-118 (SEQ ID:10) unrelated to DP178, which inhibits HIV-1 cell free virus infection; DP-125 (SEQ ID:8), unrelated to DP178, also inhibits HIV-1 cell free virus infection; DP-116 (SEQ ID:9), unrelated to DP178, is negative for inhibition of HIV-1 infection when tested using a cell-free virus infection assay. Throughout the figures, the one letter amino acid code is used.


FIG. 2. Inhibition of HIV-1 cell-free virus infection by synthetic peptides. IC50 refers to the concentration of peptide that inhibits RT production 20 from infected cells by 50% compared to the untreated control. Control: the level of RT produced by untreated cell cultures infected with the same level of virus as treated cultures.


FIG. 3. Inhibition of HIV-1 and HIV-2 cell-free virus infection by the synthetic peptide DP178 (SEQ ID:1). IC50: concentration of peptide that inhibits RT production by 50% compared to the untreated control. Control: Level of RT produced by untreated cell cultures infected with the same level of virus as treated cultures.



FIGS. 4A-4B. Fusion Inhibition Assays. FIG. 4A: DP178 (SEQ ID:1) inhibition of HIV-1 prototypic isolate-mediated syncytial formation; data represents the number of virus-induced syncytial per cell. FIG. 4B: DP-180 (SEQ ID:2) represents a scrambled control peptide; DP-185 (SEQ ID:3) represents a DP178 homolog derived from HIV-1SF2 isolate; Control, refers to the number of syncytial produced in the absence of peptide.


FIG. 5. Fusion inhibition assay: HIV-1 vs. HIV-2. Data represents the number of virus-induced syncytial per well. ND: not done.


FIG. 6. Cytotoxicity study of DP178 (SEQ ID:1) and DP-116 (SEQ ID:9) on CEM cells. Cell proliferation data is shown.


FIG. 7. Schematic representation of HIV-gp41 and maltose binding protein (MBP)-gp41 fusion proteins. DP107 and DP178 are synthetic peptides based on the two putative helices of gp41. The letter P in the DP107 boxes denotes an Ile to Pro mutation at amino acid number 578. Amino acid residues are numbered according to Meyers et al., “Human Retroviruses and AIDS”, 1991, Theoret. Biol. and Biophys. Group, Los Alamos Natl. Lab., Los Alamos, N. Mex. The proteins are more fully described, below, in Section 8.1.1.



FIG. 8. A point mutation alters the conformation and anti-HIV activity of M41.


FIG. 9. Abrogation of DP178 anti-HIV activity. Cell fusion assays were carried out in the presence of 10 nM DP178 and various concentrations of M41Δ1178 or M41PΔ178.


FIG. 10. Binding of DP178 to leucine zipper of gp41 analyzed by FAb-D ELISA.



FIG. 11A-B. Models for a structural transition in the HIV-1 TM protein. Two models are proposed which indicate a structural transition from a native oligomer to a fusogenic state following a trigger event (possibly gp120 binding to CD4). Common features of both models include (1) the native state is held together by noncovalent protein-protein interactions to form the heterodimer of gp120/41 and other interactions, principally though gp41 interactive sites, to form homo-oligomers on the virus surface of the gp120/41 complexes; (2) shielding of the hydrophobic fusogenic peptide at the N-terminus (F) in the native state; and (3) the leucine zipper domain (DP107) exists as a homo-oligomer coiled coil only in the fusogenic state. The major differences in the two models include the structural state (native or fusogenic) in which the DP107 and DP178 domains are complexed to each other. In the first model (FIG. 11A) this interaction occurs in the native state and in the second (FIG. 11B), it occurs during the fusogenic state. When triggered, the fusion complex in the model depicted in (A) is generated through formation of coiled-coil interactions in homologous DP107 domains resulting in an extended α-helix. This conformational change positions the fusion peptide for interaction with the cell membrane. In the second model (FIG. 11B), the fusogenic complex is stabilized by the association of the DP178 domain with the DP107 coiled-coil.


FIG. 12. Motif design using heptad repeat positioning of amino acids of known coiled-coils.


FIG. 13. Motif design using proposed heptad repeat positioning of amino acids of DP107 and DP178.


FIG. 14. Hybrid motif design crossing GCN4 and DP107.


FIG. 15. Hybrid motif design crossing GCN4 and DP178.


FIG. 16. Hybrid motif design 107x178x4, crossing DP107 and DP178. This motif was found to be the most consistent at identifying relevant DP107-like and DP178-like peptide regions.


FIG. 17. Hybrid motif design crossing GCN4, DP107, and DP178.


FIG. 18. Hybrid motif design ALLMOTI5 crossing GCN4, DP107, DP178, c-Fos c-Jun, c-Myc, and Flu Loop 36.


FIG. 19. PLZIP motifs designed to identify N-terminal proline-leucine zipper motifs.


FIG. 20. Search results for HIV-1 (BRU isolate) enveloped protein gp41. Sequence search motif designations: Spades (custom character): 107x178x4; Hearts (♥) ALLMOTI5; Clubs (custom character): PLZIP; Diamonds (custom character): transmembrane region (the putative transmembrane domains were identified using a PC/Gene program designed to search for such peptide regions). Asterisk (*): Lupas method. The amino acid sequences identified by each motif are bracketed by the respective characters. Representative sequences chosen based on 107x178x4 searches are underlined and in bold. DP107 and DP178 sequences are marked, and additionally double-underlined and italicized.


FIG. 21. Search results for human respiratory syncytial virus (RSV) strain A2 fusion glycoprotein F1. Sequence search motif designations are as in FIG. 20.


FIG. 22. Search results for simian immunodeficiency virus (SIV) enveloped protein gp41 (AGM3 isolate). Sequence search motif designations are as in FIG. 20.


FIG. 23. Search results for canine distemper virus (strain Onderstepoort) fusion glycoprotein 1. Sequence search motif designations are as in FIG. 20.


FIG. 24. Search results for newcastle disease virus (strain Australia-Victoria/32) fusion glycoprotein F1. Sequence search motif designations are as in FIG. 20.


FIG. 25. Search results for human parainfluenza 3 virus (strain NIH 47885) fusion fglycoprotein F1. Sequence search motif designations are as in FIG. 20.


FIG. 26. Search results for influenza A virus (strain A/AICHI/2/68) hemagglutinin precursor HA2. Sequence search designations are as in FIG. 20.



FIGS. 27A-D. Respiratory Syncytial Virus (RSV) peptide antiviral and circular dichroism data. FIGS. 27A-B: Peptides derived from the F2 DP178/DP107-like region. Antiviral and CD data. FIGS. 27C-D: Peptides derived from the F1 DP107-like region. Peptide and CD data.


Antiviral activity (AV) is represented by the following qualitative symbols:


“−”, negative antiviral activity;


“+/−”, antiviral activity at greater than 100 μg/ml;


“+”, antiviral activity at between 50-100 μg/ml;


“++”, antiviral activity at between 20-50 μg/ml;


“+++”, antiviral activity at between 1-20 μg/ml;


“++++”, antiviral activity at <1 μg/ml.


CD data, referring to the level of helicity is represented by the following qualitative symbol:


“−”, no helicity;


“+”, 25-50% helicity;


“++”, 50-75% helicity;


“+++”, 75-100% helicity.


IC50 refers to the concentration of peptide necessary to produce only 50% of the number of syncytial relative to infected control cultures containing no peptide. IC50 values were obtained using purified peptides only.



FIGS. 28A-B. Respiratory Syncytial Virus (RSV) DP178-like region (F1) peptide antiviral and CD data. Antiviral symbols, CD symbols, and IC50 are as in FIGS. 27A-D. IC50 values were obtained using purified peptides only.



FIGS. 29A-B. Peptides derived from the HPIV3 F1 DP107-like region. Peptide antiviral and CD data. Antiviral symbols, CD symbols, and IC50 are as in FIGS. 27A-D. Purified peptides were used to obtain IC50 values, except where the values are marked by an asterisk (*), in which cases, the IC50 values were obtained using a crude peptide preparation.



FIGS. 30A-B. Peptides derived from the HPIV3 F1 DP178-like region. Peptide antiviral and CD data. Antiviral symbols, CD symbols, and IC50 are as in FIGS. 27A-D. Purified peptides were used to obtain IC50 values, except where the values are marked by an asterisk (*), in which cases, the IC50 values were obtained using a crude peptide preparation.


FIG. 31. Motif search results for simian immunodeficiency virus (SIV) isolate MM251, enveloped polyprotein gp41. Sequence search designations are as in FIG. 20.


FIG. 32. Motif search results for Epstein-Barr Virus (Strain B95-8), glycoprotein gp110 precursor (designated gp115). BALF4. Sequence search designations are as in FIG. 20.


FIG. 33. Motif search results for Epstein-Barr Virus (Strain B95-8), BZLF1 trans-activator protein (designated EB1 or Zebra). Sequence search designations are as in FIG. 20. Additionally, “@” refers to a well known DNA binding domain and “+” refers to a well known dimerization domain, as defined by Flemington and Speck (Flemington, E. and Speck, S. H., 1990, Proc. Natl. Acad. Sci. USA 87:9459-9463).


FIG. 34. Motif search results for measles virus (strain Edmonston), fusion glycoprotein F1. Sequence search designations are as in FIG. 20.


FIG. 35. Motif search results for Hepatitis B Virus (Subtype AYW), major surface antigen precursor S. Sequence search designations are as in FIG. 20.


FIG. 36. Motif search results for simian Mason-Pfizer monkey virus, enveloped (TM) protein gp20. Sequence search designations are as in FIG. 20.


FIG. 37. Motif search results for Pseudomonas aerginosa, fimbrial protein (Pilin). Sequence search designations are as in FIG. 20.


FIG. 38. Motif search results for Neisseria gonorrhoeae fimbrial protein (Pilin). Sequence search designations are as in FIG. 20.


FIG. 39. Motif search results for Hemophilus influenzae fimbrial protein. Sequence search designations are as in FIG. 20.


FIG. 40. Motif search results for Staphylococcus aureus, toxic shock syndrome toxin-1. Sequence search designations are as in FIG. 20.


FIG. 41. Motif search results for Staphylococcus aureus enterotoxin Type E. Sequence search designations are as in FIG. 20.


FIG. 42. Motif search results for Staphylococcus aureus enterotoxin A. Sequence search designations are as in FIG. 20.


FIG. 43. Motif search results for Escherichia coli, heat labile enterotoxin A. Sequence search designations are as in FIG. 20.


FIG. 44. Motif search results for human c-fos proto-oncoprotein. Sequence search designations are as in FIG. 20.


FIG. 45. Motif search results for human lupus KU autoantigen protein P70. Sequence search designations are as in FIG. 20.


FIG. 46. Motif search results for human zinc finger protein 10. Sequence search designations are as in FIG. 20.


FIG. 47. Measles virus (MeV) fusion protein DP178-like region antiviral and CD data. Antiviral symbols, CD symbols, and IC50 are as in FIGS. 27A-D. IC50 values were obtained using purified peptides.


FIG. 48. Simian immunodeficiency virus (SIV) TM (fusion) protein DP178-like region antiviral data. Antiviral symbols are as in FIGS. 27A-D “NT”, not tested.



FIGS. 49A-C. DP178-derived peptide antiviral data. The peptides listed herein were derived from the region surrounding the HIV-1 BRU isolate DP178 region (e.g., gp41 amino acid residues 615-717).


In instances where peptides contained DP178 point mutations, the mutated amino acid residues are shown with a shaded background. In instances in which the test peptide has had an amino and/or carboxy-terminal group added or removed (apart from the standard amido- and acetyl-blocking groups found on such peptides), such modifications are indicated. FIG. 49A: The column to the immediate right of the name of the test peptide indicates the size of the test peptide and points out whether the peptide is derived from a one amino acid peptide “walk” across the DP178 region. The next column to the right indicates whether the test peptide contains a point mutation, while the column to its right indicates whether certain amino acid residues have been added to or removed from the DP178-derived amino acid sequence. FIG. 49B: The column to the immediate right of the test peptide name indicates whether the peptide represents a DP178 truncation, the next column to the right points out whether the peptide contains a point mutation, and the column to its right indicates whether the peptide contains amino acids which have been added to or removed from the DP178 sequence itself. FIG. 49C: The column to the immediate right of the test peptide name indicates whether the test peptide contains a point mutation, while the column to its right indicates whether amino acid residues have been added to or removed from the DP178 sequence itself. IC50 is as defined in FIGS. 27A-D, and IC50 values were obtained using purified peptides except where marked with an asterisk (*), in which case the IC50 was obtained using a crude peptide preparation.


FIG. 50. DP107 and DP107 gp41 region truncated peptide antiviral data. IC50 as defined in FIGS. 27A-D, and IC50 values were obtained using purified peptides except where marked with an asterisk (*), in which case the IC50 was obtained using a crude peptide preparation.



FIGS. 51A-B. Epstein-Barr virus Strain B95-8 BZLF1 DP178/DP107 analog region peptide walks and electrophoretic mobility shift assay results. The peptides (T-423 to T-446, FIG. 51A; T-447 to T-461, FIG. 51B) represent one amino acid residue “walks” through the EBV Zebra protein region from amino acid residue 173 to 246.


The amino acid residue within this region which corresponds to the first amino acid residue of each peptide is listed to the left of each peptide, while the amino acid residue within this region which corresponds to the last amino acid residue of each peptide is listed to the right of each peptide. The length of each test peptide is listed at the far right of each line, under the heading “Res”.


“ACT” refers to a test peptide's ability to inhibit Zebra binding to its response element. “+” refers to a visible, but incomplete, abrogation of the response element/Zebra homodimer complex; “+++” refers to a complete abrogation of the complex; and “−” represents a lack of complex disruption.



FIGS. 52A-B. Hepatitis B virus subtype AYW major surface antigen precursor S protein DP178/DP107 analog region and peptide walks. 52A depicts Domain I (S protein amino acid residues 174-220), which contains a potential DP178/DP107 analog region. In addition, peptides are listed which represent one amino acid peptide “walks” through domain I. 52B depicts Domain II (S protein amino acid residues 233-291), which contains a second potential DP178/DP107 analog region. In addition, peptides are listed which represent one amino acid peptide “walks” through domain II.





5. DETAILED DESCRIPTION OF THE INVENTION

Described herein are peptides which may exhibit antifusogenic activity, antiviral capability, and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. The peptides described include, first, DP178 (SEQ ID NO:1), a gp41-derived 36 amino acid peptide and fragments and analogs of DP178.


In addition, the peptides of the invention described herein include peptides which are DP107 analogs. DP107 (SEQ ID NO:25) is a 38 amino acid peptide corresponding to residues 558 to 595 of the HIV-1LAI transmembrane (TM) gp41 protein. Such DP107 analogs may exhibit antifusogenic capability, antiviral activity or an ability to modulate intracellular processes involving coiled-coil structures.


Further, peptides of the invention include DP107 and DP178 are described herein having amino acid sequences recognized by the 107x178x4, ALLMOTI5, and PLZIP search motifs. Such motifs are also discussed.


Also described here are antifusogenic, antiviral, intracellular modulatory, and diagnostic uses of the peptides of the invention. Further, procedures are described for the use of the peptides of the invention for the identification of compounds exhibiting antifusogenic, antiviral or intracellular modulatory activity.


While not limited to any theory of operation, the following model is proposed to explain the potent anti-HIV activity of DP178, based, in part, on the experiments described in the Examples, infra. In the HIV protein, gp41, DP178 corresponds to a putative α-helix region located in the C-terminal end of the gp41 ectodomain, and appears to associate with a distal site on gp41 whose interactive structure is influenced by the leucine zipper motif, a coiled-coil structure, referred to as DP107. The association of these two domains may reflect a molecular linkage or “molecular clasp” intimately involved in the fusion process. It is of interest that mutations in the C-terminal α-helix motif of gp41 (i.e., the D178 domain) tend to enhance the fusion ability of gp41, whereas mutations in the leucine zipper region (i.e., the DP107 domain) decrease or abolish the fusion ability of the viral protein. It may be that the leucine zipper motif is involved in membrane fusion while the C-terminal α-helix motif serves as a molecular safety to regulate the availability of the leucine zipper during virus-induced membrane fusion.


On the basis of the foregoing, two models are proposed of gp41-mediated membrane fusion which are schematically shown in FIGS. 11A-B. The reason for proposing two models is that the temporal nature of the interaction between the regions defined by DP107 and DP178 cannot, as yet, be pinpointed. Each model envisions two conformations for gp41—one in a “native” state as it might be found on a resting virion. The other in a “fusogenic” state to reflect conformational changes triggered following binding of gp120 to CD4 and just prior to fusion with the target cell membrane. The strong binding affinity between gp120 and CD4 may actually represent the trigger for the fusion process obviating the need for a pH change such as occurs for viruses that fuse within intracellular vesicles. The two major features of both models are: (1) the leucine zipper sequences (DP107) in each chain of oligomeric enveloped are held apart in the native state and are only allowed access to one another in the fusogenic state so as to form the extremely stable coiled-coils, and (2) association of the DP178 and DP107 sites as they exist in gp41 occur either in the native or fusogenic state. FIG. 11A depicts DP178/DP107 interaction in the native state as a molecular clasp. On the other hand, if one assumes that the most stable form of the enveloped occurs in the fusogenic state, the model in FIG. 11B can be considered.


When synthesized as peptides, both DP107 and DP178 are potent inhibitors of HIV infection and fusion, probably by virtue of their ability to form complexes with viral gp41 and interfere with its fusogenic process; e.g., during the structural transition of the viral protein from the native structure to the fusogenic state, the DP178 and DP107 peptides may gain access to their respective binding sites on the viral gp41, and exert a disruptive influence. DP107 peptides which demonstrate anti-HIV activity are described in Applicants' co-pending application Ser. No. 08/264,531, filed Jun. 23, 1994, which is incorporated by reference herein in its entirety.


As shown in the Examples, infra, a truncated recombinant gp41 protein corresponding to the ectodomain of gp41 containing both DP107 and DP178 domains (excluding the fusion peptide, transmembrane region and cytoplasmic domain of gp41) did not inhibit HIV-1 induced fusion. However, when a single mutation was introduced to disrupt the coiled-coil structure of the DP107 domain—a mutation which results in a total loss of biological activity of DP107 peptides—the inactive recombinant protein was transformed to an active inhibitor of HIV-1 induced fusion. This transformation may result from liberation of the potent DP178 domain from a molecular clasp with the leucine zipper, DP107 domain.


For clarity of discussion, the invention will be described primarily for DP178 peptide inhibitors of HIV. However, the principles may be analogously applied to other viruses, both enveloped and nonenveloped, and to other non-viral organisms.


5.1. DP178 and DP178-like Peptides

The DP178 peptide (SEQ ID:1) of the invention corresponds to amino acid residues 638 to 673 of the transmembrane protein gp41 from the HIV-1LAI isolate, and has the 36 amino acid sequence (reading from amino to carboxy terminus):

  • NH2-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-COOH (SEQ ID:1)


In addition to the full-length DP178 (SEQ ID:1) 36-mer, the peptides of the invention may include truncations of the DP178 (SEQ ID:1) peptide which exhibit antifusogenic activity, antiviral activity and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. Truncations of DP178 (SEQ ID:1) peptides may comprise peptides of between 3 and 36 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 36-mer polypeptide), as shown in Tables I and IA, below. Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH2) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.









TABLE I





DP178 (SEQ ID: 1) CARBOXY TRUNCATIONS

















X-YTS-Z



X-YTSL-Z



X-YTSLI-Z



X-YTSLIH-Z



X-YTSLIHS-Z



X-YTSLIHSL-Z



X-YTSLIHSLI-Z



X-YTSLIHSLIE-Z



X-YTSLIHSLIEE-Z



X-YTSLIHSLIEES-Z



X-YTSLIHSLIEESQ-Z



X-YTSLIHSLIEESQN-Z



X-YTSLIHSLIEESQNQ-Z



X-YTSLIHSLIEESQNQQ-Z



X-YTSLIHSLIEESQNQQE-Z



X-YTSLIHSLIEESQNQQEK-Z



X-YTSLIHSLIEESQNQQEKN-Z



X-YTSLIHSLIEESQNQQEKNE-Z



X-YTSLIHSLIEESQNQQEKNEQ-Z



X-YTSLIHSLIEESQNQQEKNEQE-Z



X-YTSLIHSLIEESQNQQEKNEQEL-Z



X-YTSLIHSLIEESQNQQEKNEQELL-Z



X-YTSLIHSLIEESQNQQEKNEQELLE-Z



X-YTSLIHSLIEESQNQQEKNEQELLEL-Z



X-YTSLIHSLIEESQNQQEKNEQELLELD-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDK-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKW-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWA-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWAS-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASL-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLW-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWN-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z







The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE IA





DP178 (SEQ ID: 1) AMINO TRUNCATIONS















X-NWF-Z


X-WNWF-Z


X-LWNWF-Z


X-SLWNWF-Z


X-ASLWNWF-Z


X-WASLWNWF-Z


X-KWASLWNWF-Z


X-DKWASLWNWF-Z


X-LDKWASLWNWF-Z


X-ELDKWASLWNWF-Z


X-LELDKWASLWNWF-Z


X-LLELDKWASLWNWF-Z


X-ELLELDKWASLWNWF-Z


X-QELLELDKWASLWNWF-Z


X-EQELLELDKWASLWNWF-Z


X-NEQELLELDKWASLWNWF-Z


X-KNEQELLELDKWASLWNWF-Z


X-EKNEQELLELDKWASLWNWF-Z


X-QEKNEQELLELDKWASLWNWF-Z


X-QQEKNEQELLELDKWASLWNWF-Z


X-NQQEKNEQELLELDKWASLWNWF-Z


X-QNQQEKNEQELLELDKWASLWNWF-Z


X-SQNQQEKNEQELLELDKWASLWNWF-Z


X-ESQNQQEKNEQELLELDKWASLWNWF-Z


X-EESQNQQEKNEQELLELDKWASLWNWF-Z


X-IEESQNQQEKNEQELLELDKWASLWNWF-Z


X-LIEESQNQQEKNEQELLELDKWASLWNWF-Z


X-SLIEESQNQQEKNEQELLELDKWASLWNWF-Z


X-HSLIEESQNQQEKNEQELLELDKWASLWNWF-Z


X-IHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z


X-LIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z


X-SLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z


X-TSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z


X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z





The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


The peptides of the invention also include DP178-like peptides. “DP178-like”, as used herein, refers, first, to DP178 and DP178 truncations which contain one or more amino acid substitutions, insertions and/or deletions. Second, “DP-178-like” refers to peptide sequences identified or recognized by the ALLMOTI5, 107x178x4 and PLZIP search motifs described herein, having structural and/or amino acid motif similarity to DP178. The DP178-like peptides of the invention may exhibit antifusogenic or antiviral activity, or may exhibit the ability to modulate intracellular processes involving coiled-coil peptides. Further, such DP178-like peptides may possess additional advantageous features, such as, for example, increased bioavailability, and/or stability, or reduced host immune recognition.


HIV-1 and HIV-2 enveloped proteins are structurally distinct, but there exists a striking amino acid conservation within the DP178-corresponding regions of HIV-1 and HIV-2. The amino acid conservation is of a periodic nature, suggesting some conservation of structure and/or function. Therefore, one possible class of amino acid substitutions would include those amino acid changes which are predicted to stabilize the structure of the DP178 peptides of the invention. Utilizing the DP178 and DP178 analog sequences described herein, the skilled artisan can readily compile DP178 consensus sequences and ascertain from these, conserved amino acid residues which would represent preferred amino acid substitutions.


The amino acid substitutions may be of a conserved or non-conserved nature. Conserved amino acid substitutions consist of replacing one or more amino acids of the DP178 (SEQ ID:1) peptide sequence with amino acids of similar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to aspartic acid (D) amino acid substitution. Non-conserved substitutions consist of replacing one or more amino acids of the DP178 (SEQ ID:1) peptide sequence with amino acids possessing dissimilar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to valine (V) substitution.


Amino acid insertions may consist of single amino acid residues or stretches of residues. The insertions may be made at the carboxy or amino terminal end of the DP178 or DP178 truncated peptides, as well as at a position internal to the peptide. Such insertions will generally range from 2 to 15 amino acids in length. It is contemplated that insertions made at either the carboxy or amino terminus of the peptide of interest may be of a broader size range, with about 2 to about 50 amino acids being preferred. One or more such insertions may be introduced into DP178 (SEQ.ID:1) or DP178 truncations, as long as such insertions result in peptides which may still be recognized by the 107x178x4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.


Preferred amino or carboxy terminal insertions are peptides ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP178 gp41 amino acid sequence, respectively. Thus, a preferred amino terminal or carboxy terminal amino acid insertion would contain gp41 amino acid sequences found immediately amino to or carboxy to the DP178 region of the gp41 protein.


Deletions of DP178 (SEQ ID:1) or DP178 truncations are also within the scope of the invention. Such deletions consist of the removal of one or more amino acids from the DP178 or DP178-like peptide sequence, with the lower limit length of the resulting peptide sequence being 4 to 6 amino acids. Such deletions may involve a single contiguous or greater than one discrete portion of the peptide sequences. One or more such deletions may be introduced into DP178 (SEQ.ID:1) or DP178 truncations, as long as such deletions result in peptides which may still be recognized by the 107x178x4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.


DP178 analogs are further described, below, in Section 5.3.


5.2. DP107 and DP107-like Peptides

Further, the peptides of the invention include peptides having amino acid sequences corresponding to DP107 analogs. DP107 is a 38 amino acid peptide which exhibits potent antiviral activity, and corresponds to residues 558 to 595 of HIV-L1LAI transmembrane (TM) gp41 protein, as shown here:

  • NH2-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-COOH (SEQ ID:25)


In addition to the full-length DP107 (SEQ ID:25) 38-mer, the peptides of the invention may include truncations of the DP107 (SEQ ID:25) peptide which exhibit antifusogenic activity, antiviral activity and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. Truncations of DP107 (SEQ ID:25) peptides may comprise peptides of between 3 and 38 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 38-mer polypeptide), as shown in Tables II and IIA, below. Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH2) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.









TABLE II





DP107 CARBOXY TRUNCATIONS















X-NNL-Z


X-NNLL-Z


X-NNLLR-Z


X-NNLLRA-Z


X-NNLLRAI-Z


X-NNLLRAIE-Z


X-NNLLRAIEA-Z


X-NNLLRAIEAQ-Z


X-NNLLRAIEAQQ-Z


X-NNLLRAIEAQQH-Z


X-NNLLRAIEAQQHL-Z


X-NNLLRAIEAQQHLL-Z


X-NNLLRAIEAQQHLLQ-Z


X-NNLLRAIEAQQHLLQL-Z


X-NNLLRAIEAQQHLLQLT-Z


X-NNLLRAIEAQQHLLQLTV-Z


X-NNLLRAIEAQQHLLQLTVW-Z


X-NNLLRAIEAQQHLLQLTVWQ-Z


X-NNLLRAIEAQQHLLQLTVWQI-Z


X-NNLLRAIEAQQHLLQLTVWQIK-Z


X-NNLLRAIEAQQHLLQLTVWQIKQ-Z


X-NNLLRAIEAQQHLLQLTVWQIKQL-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQ-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQA-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQAR-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARI-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARIL-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILA-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAV-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVE-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVER-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERY-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYL-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLK-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKD-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z





The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE IIA





DP178 (SEQ ID:25) AMINO TRUNCATIONS















X-KDQ-Z


X-LKDQ-Z


X-YLKDQ-Z


X-RYLKDQ-Z


X-ERYLKDQ-Z


X-VERYLKDQ-Z


X-AVERYLKDQ-Z


X-LAVERYLKDQ-Z


X-ILAVERYLKDQ-Z


X-RILAVERYLKDQ-Z


X-ARILAVERYLKDQ-Z


X-QARILAVERYLKDQ-Z


X-LQARILAVERYLKDQ-Z


X-QLQARILAVERYLKDQ-Z


X-KQLQARILAVERYLKDQ-Z


X-IKQLQARILAVERYLKDQ-Z


X-QIKQLQARILAVERYLKDQ-Z


X-WQIKQLQARILAVERYLKDQ-Z


X-VWQIKQLQARILAVERYLKDQ-Z


X-TVWQIKQLQARILAVERYLKDQ-Z


X-LTVWQIKQLQARILAVERYLKDQ-Z


X-QLTVWQIKQLQARILAVERYLKDQ-Z


X-LQLTVWQIKQLQARILAVERYLKDQ-Z


X-LLQLTVWQIKQLQARILAVERYLKDQ-Z


X-HLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-QHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-QQHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-AQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-EAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-IEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-AIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-RAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-LRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-LLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-NLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z


X-NNLLRAIEAQQHLLQLTVWQIKQLQARILAVERYLKDQ-Z





The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl group; a macromolecula carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


The peptides of the invention also include DP107-like peptides. “DP107-like”, as used herein, refers, first, to DP107 and DP107 truncations which contain one or more amino acid substitutions, insertions and/or deletions. Second, “DP-107-like” refers to peptide sequences identified or recognized by the ALLMOTI5, 107x178x4 and PLZIP search motifs described herein, having structural and/or amino acid motif similarity to DP107. The DP107-like peptides of the invention may exhibit antifusogenic or antiviral activity, or may exhibit the ability to modulate intracellular processes involving coiled-coil peptides. Further, such DP107-like peptides may possess additional advantageous features, such as, for example, increased bioavailability, and/or stability, or reduced host immune recognition.


HIV-1 and HIV-2 enveloped proteins are structurally distinct, but there exists a striking amino acid conservation within the DP107-corresponding regions of HIV-1 and HIV-2. The amino acid conservation is of a periodic nature, suggesting some conservation of structure and/or function. Therefore, one possible class of amino acid substitutions would include those amino acid changes which are predicted to stabilize the structure of the DP107 peptides of the invention. Utilizing the DP107 and DP107 analog sequences described herein, the skilled artisan can readily compile DP107 consensus sequences and ascertain from these, conserved amino acid residues which would represent preferred amino acid substitutions.


The amino acid substitutions may be of a conserved or non-conserved nature. Conserved amino acid substitutions consist of replacing one or more amino acids of the DP107 (SEQ ID:25) peptide sequence with amino acids of similar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to aspartic acid (D) amino acid substitution. Non-conserved substitutions consist of replacing one or more amino acids of the DP107 (SEQ ID:25) peptide sequence with amino acids possessing dissimilar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to valine (V) substitution.


Amino acid insertions may consist of single amino acid residues or stretches of residues. The insertions may be made at the carboxy or amino terminal end of the DP107 or DP107 truncated peptides, as well as at a position internal to the peptide. Such insertions will generally range from 2 to 15 amino acids in length. It is contemplated that insertions made at either the carboxy or amino terminus of the peptide of interest may be of a broader size range, with about 2 to about 50 amino acids being preferred. One or more such insertions may be introduced into DP107 (SEQ.ID:25) or DP107 truncations, as long as such insertions result in peptides which may still be recognized by the 107x178x4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.


Preferred amino or carboxy terminal insertions are peptides ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP107 gp41 amino acid sequence, respectively. Thus, a preferred amino terminal or carboxy terminal amino acid insertion would contain gp41 amino acid sequences found immediately amino to or carboxy to the DP107 region of the gp41 protein.


Deletions of DP107 (SEQ ID:25) or DP178 truncations are also within the scope of the invention. Such deletions consist of the removal of one or more amino acids from the DP107 or DP107-like peptide sequence, with the lower limit length of the resulting peptide sequence being 4 to 6 amino acids. Such deletions may involve a single contiguous or greater than one discrete portion of the peptide sequences One or more such deletions may be introduced into DP107 (SEQ.ID:25) or DP107 truncations, as long as such deletions result in peptides which may still be recognized by the 107x178x4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.


DP107 and DP107 truncations are more fully described in Applicants' co-pending U.S. patent application Ser. No. 08/374,666, filed Jan. 27, 1995, and which is incorporated herein by reference in its entirety. DP107 analogs are further described, below, in Section 5.3.


5.3. DP107 and DP178 Aanalogs

Peptides corresponding to analogs of the DP178, DP178 truncations, DP107 and DP107 truncation sequences of the invention, described, above, in Sections 5.1 and 5.2 may be found in other viruses, including, for example, non-HIV-1LAI enveloped viruses, non-enveloped viruses and other non-viral organisms.


The term “analog”, as used herein, refers to a peptide which is recognized or identified via the 107x178x4, ALLMOTI5 and/or PLZIP search strategies discussed below. Further, such peptides may exhibit antifusogenic capability, antiviral activity, or the ability to modulate intracellular processes involving coiled-coil structures.


Such DP178 and DP107 analogs may, for example, correspond to peptide sequences present in TM proteins of enveloped viruses and may, additionally correspond to peptide sequences present in non enveloped and non-viral organisms. Such peptides may exhibit antifusogenic activity, antiviral activity, most particularly antiviral activity which is specific to the virus in which their native sequences are found, or may exhibit an ability to modulate intracellular processes involving coiled-coil peptide structures.


DP178 analogs are peptides whose amino acid sequences are comprised of the amino acid sequences of peptide regions of, for example, other (i.e., other than HIV-1LAI) viruses that correspond to the gp41 peptide region from which DP178 (SEQ ID:1) was derived. Such viruses may include, but are not limited to, other HIV-1 isolates and HIV-2 isolates. DP178 analogs derived from the corresponding gp41 peptide region of other (i.e., non HIV-1LAI) HIV-1 isolates may include, for example, peptide sequences as shown below.

  • NH2-YTNTIYTLLEESQNQQEKNEQELLELDKWASLWNWF-COOH (DP-185; SEQ ID:3);
  • NH2-YTGIIYNLLEESQNQQEKNEQELLELDKWANLWNWF-COOH (SEQ ID:4);
  • NH2-YTSLIYSLLEKSQIQQEKNEQELLELDKWASLWNWF-COOH (SEQ ID:5).


    SEQ ID:3 (DP-185), SEQ ID:4, and SEQ ID:5 are derived from HIV-1SF2, HIV-1RF, and HIV-1MN isolates, respectively. Underlined amino acid residues refer to those residues that differ from the corresponding position in the DP178 (SEQ ID:1) peptide. One such DP178 analog, DP-185 (SEQ ID:3), is described in the Example presented in Section 6, below, where it is demonstrated that DP-185 (SEQ ID:3) exhibits antiviral activity. The DP178 analogs of the invention may also include truncations, as described above. Further, the analogs of the invention modifications such those described for DP178 analogs in Section 5.1., above. It is preferred that the DP178 analogs of the invention represent peptides whose amino acid sequences correspond to the DP178 region of the gp41protein, it is also contemplated that the peptides of the invention may, additionally, include amino sequences, ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP178 amino acid sequence.


Striking similarities, as shown in FIG. 1, exist within the regions of HIV-1 and HIV-2 isolates which correspond to the DP178 sequence. A DP178 analog derived from the HIV-2NIHZ isolate has the 36 amino acid sequence (reading from amino to carboxy terminus):

  • NH2-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-COOH (SEQ ID:7)


    Table III and Table IV show some possible truncations of the HIV-2NIHZ DP178 analog, which may comprise peptides of between 3 and 36 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 36-mer polypeptide). Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH2) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.









TABLE III





HIV-2NIHZ DP178 analog carboxy truncations.

















X-LEA-Z



X-LEAN-Z



X-LEANI-Z



X-LEANIS-Z



X-LEANISQ-Z



X-LEANISQS-Z



X-LEANISQSL-Z



X-LEANISQSLE-Z



X-LEANISQSLEQ-Z



X-LEANISQSLEQA-Z



X-LEANISQSLEQAQ-Z



X-LEANISQSLEQAQI-Z



X-LEANISQSLEQAQIQ-Z



X-LEANISQSLEQAQIQQ-Z



X-LEANISQSLEQAQIQQE-Z



X-LEANISQSLEQAQIQQEK-Z



X-LEANISQSLEQAQIQQEKN-Z



X-LEANISQSLEQAQIQQEKNM-Z



X-LEANISQSLEQAQIQQEKNMY-Z



X-LEANISQSLEQAQIQQEKNMYE-Z



X-LEANISQSLEQAQIQQEKNMYEL-Z



X-LEANISQSLEQAQIQQEKNMYELQ-Z



X-LEANISQSLEQAQIQQEKNMYELQK-Z



X-LEANISQSLEQAQIQQEKNMYELQKL-Z



X-LEANISQSLEQAQIQQEKNMYELQKLN-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNS-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSW-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWD-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDV-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVF-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFT-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTN-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNW-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z







The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE IV





HIV-2NIHZ DP178 analog amino truncations.
















X-NWL-Z



X-TNWL-Z


X-FTNWL-Z


X-VFTNWL-Z


X-DVFTNWL-Z


X-WDVFTNWL-Z


X-SWDVFTNWL-Z


X-NSWDVFTNWL-Z


X-LNSWDVFTNWL-Z


X-KLNSWDVFTNWL-Z


X-QKLNSWDVFTNWL-Z


X-LQKLNSWDVFTNWL-Z


X-ELQKLNSWDVFTNWL-Z


X-YELQKLNSWDVFTNWL-Z


X-MYELQKLNSWDVFTNWL-Z


X-NMYELQKLNSWDVFTNWL-Z


X-KNMYELQKLNSWDVFTNWL-Z


X-EKNMYELQKLNSWDVFTNWL-Z


X-QEKNMYELQKLNSWDVFTNWL-Z


X-QQEKNMYELQKLNSWDVFTNWL-Z


X-IQQEKNMYELQKLNSWDVFTNWL-Z


X-QIQQEKNMYELQKLNSWDVFTNWL-Z


X-AQIQQEKNMYELQKLNSWDVFTNWL-Z


X-QAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-EQAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-LEQAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-SLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-QSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-SQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-ISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-NISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-ANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-EANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z


X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z





The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


DP178 and DP107 analogs are recognized or identified, for example, by utilizing one or more of the 107x178x4, ALLMOTI5 or PLZIP computer-assisted search strategies described and demonstrated, below, in the Examples presented in Sections 9 through 16 and 19 through 25. The search strategy identifies additional peptide regions which are predicted to have structural and/or amino acid sequence features similar to those of DP107 and/or DP178.


The search strategies are described fully, below, in the Example presented in Section 9. While this search strategy is based, in part, on a primary amino acid motif deduced from DP107 and DP178, it is not based solely on searching for primary amino acid sequence homologies, as such protein sequence homologies exist within, but not between major groups of viruses. For example, primary amino acid sequence homology is high within the TM protein of different strains of HIV-1 or within the TM protein of different isolates of simian immunodeficiency virus (SIV). Primary amino acid sequence homology between HIV-1 and SIV, however, is low enough so as not to be useful. It is not possible, therefore, to find peptide regions similar to DP107 or DP178 within other viruses, or within non-viral organisms, whether structurally, or otherwise, based on primary sequence homology, alone.


Further, while it would be potentially useful to identify primary sequence arrangements of amino acids based on, for example, the physical chemical characteristics of different classes of amino acids rather than based on the specific amino acids themselves, such search strategies have, until now, proven inadequate. For example, a computer algorithm designed by Lupas et al. to identify coiled-coil propensities of regions within proteins (Lupas, A., et al., 1991 Science 252:1162-1164) is inadequate for identifying protein regions analogous to DP107 or DP178.


Specifically, analysis of HIV-1 gp160 (containing both gp120 and gp41) using the Lupas algorithm does not identify the coiled-coil region within DP107. It does, however, identify a region within DP178 beginning eight amino acids N-terminal to the start of DP178 and ending eight amino acids from the C-terminus. The DP107 peptide has been shown experimentally to form a stable coiled coil. A search based on the Lupas search algorithm, therefore, would not have identified the DP107 coiled-coil region. Conversely, the Lupas algorithm identified the DP178 region as a potential coiled-coil motif. However, the peptide derived from the DP178 region failed to form a coiled coil in solution.


A possible explanation for the inability of the Lupas search algorithm to accurately identify coiled-coil sequences within the HIV-1 TM, is that the Lupas algorithm is based on the structure of coiled coils from proteins that are not structurally or functionally similar to the TM proteins of viruses, antiviral peptides (e.g. DP107 and DP178) of which are an object of this invention.


The computer search strategy of the invention, as demonstrated in the Examples presented below, in Sections 9 through 16 and 19 through 25, successfully identifies regions of proteins similar to DP107 or DP178. This search strategy was designed to be used with a commercially-available sequence database package, preferably PC/Gene.


A series of search motifs, the 107x178x4, ALLMOTI5 and PLZIP motifs, were designed and engineered to range in stringency from strict to broad, as discussed in this Section and in Section 9, with 107x178x4 being preferred. The sequences identified via such search motifs, such as those listed in Tables V-XIV, below, potentially exhibit antifusogenic, such as antiviral, activity, may additionally be useful in the identification of antifusogenic, such as antiviral, compounds, and are intended to be within the scope of the invention.


Coiled-coiled sequences are thought to consist of heptad amino acid repeats. For ease of description, the amino acid positions within the heptad repeats are sometimes referred to as A through G, with the first position being A, the second B, etc. The motifs used to identify DP107-like and DP178-like sequences herein are designed to specifically search for and identify such heptad repeats. In the descriptions of each of the motifs described, below, amino acids enclosed by brackets , i.e., [ ], designate the only amino acid residues that are acceptable at the given position, while amino acids enclosed by braces, i.e., { }, designate the only amino acids which are unacceptable at the given heptad position. When a set of bracketed or braced amino acids is followed by a number in parentheses i.e., ( ), it refers to the number of subsequent amino acid positions for which the designated set of amino acids hold, e.g, a (2) means “for the next two heptad amino acid positions”.


The ALLMOTI5 is written as follows:

  • {CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-
  • {CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-
  • {CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-
  • {CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-
  • {CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)-


Translating this motif, it would read: “at the first (A) position of the heptad, any amino acid residue except C, D, G, H, or P is acceptable, at the next two (B, C) amino acid positions, any amino acid residue except C, F, or P is acceptable, at the fourth heptad position (D), any amino acid residue except C, D, G, H, or P is acceptable, at the next three (E, F, G) amino acid positions, any amino acid residue except C, F, or P is acceptable. This motif is designed to search for five consecutive heptad repeats (thus the repeat of the first line five times), meaning that it searches for 35-mer sized peptides. It may also be designed to search for 28-mers, by only repeating the initial motif four times. With respect to the ALLMOTI5 motif, a 35-mer search is preferred. Those viral (non-bacteriophage) sequences identified via such an ALLMOTI5 motif are listed in Table V, below, at the end of this Section. The viral sequences listed in Table V potentially exhibit antiviral activity, may be useful in the the identification of antiviral compounds, and are intended to be within the scope of the invention. In those instances wherein a single gene exhibits greater than one sequence recognized by the ALLMOTI5 search motif, the amino a acid residue numbers of these sequences are listed under “Area 2”, Area 3”, etc. This convention is used for each of the Tables listed, below, at the end of this Section.


The 107x178x4 motif is written as follows:

  • [EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)-
  • [EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)-
  • [EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)-
  • [EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)-


Translating this motif, it would read: “at the first (A) position of the heptad, only amino acid residue E, F, I, K, L, N, Q, S, T, V, W, or Y is acceptable, at the next two (B,C) amino acid positions, any amino acid residue except C, F, M or P is acceptable, at the fourth position (D), only amino acid residue E, F, I, K, L, N, Q, S, T, V, W, or Y is acceptable, at the next three (E, F, G) amino acid positions, any amino acid residue except C, F, M or P is acceptable. This motif is designed to search for four consecutive heptad repeats (thus the repeat of the first line four times), meaning that it searches for 28-mer sized peptides. It may also be designed to search for 35-mers, by repeating the initial motif five times. With respect to the 107x178x4 motif, a 28-mer search is preferred.


Those viral (non-bacteriophage) sequences identified via such a 107x178x4 motif are listed in Table VI, below, at the end of this Section, with those viral (non-bacteriophage) sequences listed in Table VII, below at the end of this Section, being preferred.


The 107x178x4 search motif was also utilized to identify non-viral procaryotic protein sequences, as listed in Table VIII, below, at the end of this Section. Further, this search motif was used to reveal a number of human proteins. The results of this human protein 107x178x4 search is listed in Table IX, below, at the end of this Section. The sequences listed in Tables VIII and IX, therefore, reveal peptides which may be useful as antifusogenic compounds or in the identification of antifusogenic compounds, and are intended to be within the scope of the invention.


The PLZIP series of motifs are as listed in FIG. 19. These motifs are designed to identify leucine zipper coiled-coil like heptads wherein at least one proline residue is present at some predefined distance N-terminal to the repeat. These PLZIP motifs find regions of proteins with similarities to HIV-1 DP178 generally located just N-terminal to the transmembrane anchor. These motifs may be translated according to the same convention described above. Each line depicted in FIG. 19 represents a single, complete search motif. “X” in these motifs refers to any amino acid residue. In instances wherein a motif contains two numbers within parentheses, this refers to a variable number of amino acid residues. For example, X (1, 12) is translated to “the next one to twelve amino acid residues, inclusive, may be any amino acid”.


Tables X through XIV, below, at the end of this Section, list sequences identified via searches conducted with such PLZIP motifs. Specifically, Table X lists viral sequences identified via PCTLZIP, PLCTLZIP and P2CTLZIP search motifs, Table XI lists viral sequences identified via P3CTLZIP, P4CTLZIP, P5CTLZIP and P6CTLZIP search motifs, Table XII lsts viral sequences identified via P7CTLZIP, P8CTLZIP and P9CTLZIP search motifs, Table XIII lists viral sequences identified via P12LZIPC searches and Table XIV lists viral sequences identified via P23TLZIPC search motifs The viral sequences listed in these tables represent peptides which potentially exhibit antiviral activity, may be useful in the identification of antiviral compounds, and are intended to be within the scope of the invention.


The Examples presented in Sections 17, 18, 26 and 27 below, demonstrate that viral sequences identified via the motif searches described herein identify substantial antiviral characteristics. Specifically, the Example presented in Section 17 describes peptides with anti-respiratory syncytial virus activity, the Example presented in Section 18 describes peptides with anti-parainfluenza virus activity, the Example presented in Section 26 describes peptides with anti-measles virus activity and the Example presented in Section 27 describes peptides with anti-simian immunodeficiency virus activity.


The DP107 and DP178 analogs may, further, contain any of the additional groups described for DP178, above, in Section 5.1. For example, these peptides may include any of the additional amino-terminal groups as described above for “X” groups, and may also include any of the carboxy-terminal groups as described, above, for “Z” groups.


Additionally, truncations of the identified DP107 and DP178 peptides are among the peptides of the invention. Further, such DP107 and DP178 analogs and DP107/DP178 analog truncations may exhibit one or more amino acid substitutions, insertion, and/or deletions. The DP178 analog amino acid substitutions, insertions and deletions, are as described, above, for DP178-like peptides in Section 5.1. The DP-107 analog amino acid substitutions, insertions and deletions are also as described, above, for DP107-like peptides in Section 5.2.


Tables XV through XXII, below, present representative examples of such DP107/DP178 truncations. Specifically, Table XV presents Respiratory Syncytial Virus F1 region DP107 analog carboxy truncations, Table XVI presents Respiratory Syncytial Virus F1 region DP107 analog amino truncations, Table XVII presents Respiratory Syncytial Virus F1 region DP178 analog carboxy truncations, Table XVIII presents Respiratory Syncytial Virus F1region DP178 analog amino truncations, Table XIX presents Human Parainfluenza Virus 3 F1 region DP178 analog carboxy truncations, Table XX presents Human Parainfluenza Virus 3 F1 region DP178 analog amino truncations, Table XXI presents Human Parainfluenza Virus 3 F1 region DP107 analog carboxy truncations and Table XXII presents Human Parainfluenza Virus 3 F1region DP107 analog amino truncations. Further, Table XXIII, below, presents DP107/DP178 analogs and analog truncations which exhibit substantial antiviral activity. These antiviral peptides are grouped according to the specific virus which they inhibit, including respiratory syncytial virus, human parainfluenza virus 3, simian immunodeficiency virus and measles virus.









TABLE V







ALLMOTI5 SEARCH RESULTS SUMMARY FOR ALL VIRAL (NON-BACTERIOPHAGE) PROTEINS

















PCGENE
ALLMOTI5
All Viruses (no bacteriophages)










FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8





P170K_TRVPS
POTENTIAL 170 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PSG)
113-153









P194K_TRVSY
POTENTIAL 194 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN SYM
144-178
214-248
391-446
644-678
1045-
1135-
1335-
1618-









1079
1176
1376
1656


P55KD_HSV6U
55 8 KD PROTEIN
HERPES SIMPLEX VIRUS
228-262




(TYPE 6/STRAIN UGANDA-1102)


PAANT_HDVAM
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
 3-48
100-144


PAANT_HDVD3
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE D380)
 7-48
100-144


PAANT_HDVTT
DELTA ANTIGEN (ALPHA ANTIGEN)
HEPATITIS DELTA VIRUS (ISOLATE ITALIAN)
 3-48
100-144


PAANT_HDVL1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE LEBANON-1)
 3-48


PAANT_HDVM1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
 3-48
100-144




(ISOLATE JAPANESE M-1)


PAANT_HDVM2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
 3-48
100-144




(ISOLATE JAPANESE M-2)


PAANT_HDVNA
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE NAURU)
 3-48
100-144


PAANT_HDVS1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
 1-49
100-144




(ISOLATE JAPANESE S-1)


PAANT_HDVS2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
 1-49
100-144




(ISOLATE JAPANESE S-2)


PAANT_HDVWO
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
 3-48
100-144




(ISOLATE WOODCHUCK)


PAT3H_FOWPM
ANTITHROMBIN-III HOMOLOG
FOWLPOX VIRUS (ISOLATE HP-438)
 71-110


PAT11_VACCV
94 KD A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
14-57
420-564
570-625


PAT11_VARV
81 KD A-TYPE INCLUSION PROTEIN
VARIOLA VIRUS
425-525
531-565
571-628


PAT12_HSV11
ALPHA TRANS-INDUCING FACTOR
HERPES SIMPLEX VIRUS (TYPE 1)
304-345


PAT12_HSV1F
ALPHA TRANS-INDUCING FACTOR
HERPES SIMPLEX VIRUS (TYPE 1)
102-139
304-345


PAT12_HSVEB
ALPHA TRANS-INDUCING FACTOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
101-147
268-331


PAT12_VACCC
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 79-124
219-263


PAT12_VACCV
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS
 79-124


PAT12_VZVD
ALPHA TRANS-INDUCING FACTOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
298-361
395-429


PAT13_VACCV
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS
51-95


PATIN_HSV23
ALPHA TRANS-INDUCING PROTEIN (VMW65)
HERPES SIMPLEX VIRUS (TYPE 2)
178-219
324-381


PATIN_HSV2H
ALPHA TRANS-INDUCING PROTEIN (VMW65)
HERPES SIMPLEX VIRUS (TYPE 2)
177-222
324-381


PATIN_HSVBP
ALPHA TRANS-INDUCING PROTEIN
BOVINE HERPESVIRUS TYPE 1
195-256


PATIN_HSVEB
ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 1
241-289


PATIN_VZVD
ALPHA TRANS-INDUCING PROTEIN (
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
206-252


PATI_COWPX
A-TYPE INCLUSION PROTEIN
COWPOX VIRUS
14-57
426-526
532-566
572-629
803-989
1106-










1150


PBDL2_EBV
PROTEIN BDLF2
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 90-131


PBRL1_EBV
TRANSCRIPTION ACTIVATOR BRLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
150-187


PCOA1_POVBA
COAT PROTEIN VP1
POLYOMAVIRUS BK
107-141


PCOA1_POVBK
COAT PROTEIN VP1
POLYOMAVIRUS BK
107-141


PCOA1_POVHA
COAT PROTEIN VP1
HAMSTER POLYOMAVIRUS
159-195


PCOA1_SV40
COAT PROTEIN VP1
SIMIAN VIRUS 40
109-143


PCOA2_BFDV
COAT PROTEIN VP2
BUDGERIGAR FLEDGLING DISEASE VIRUS
141-213


PCOA2_POVBA
COAT PROTEIN VP2
POLYOMAVIRUS BK (STRAIN AS)
14-64
317-351


PCOA2_POVBK
COAT PROTEIN VP2
POLYOMAVIRUS BK
14-64
317-351


PCOA2_POVBO
COAT PROTEIN VP2
BOVINE POLYOMAVIRUS
35-76
153-216


PCOA2_POVHA
COAT PROTEIN VP2
HAMSTER POLYOMAVIRUS
 7-48
174-208


PCOA2_POVIC
COAT PROTEIN VP2
POLYOMAVIRUS JC
14-64
233-267


PCOA2_POVLY
COAT PROTEIN VP2
LYMPHOTROPIC POLYOMAVIRUS
14-78
156-206


PCOA2_POVM3
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS (STRAIN 3)
 5-72
137-185


PCOA2_POVMA
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
 5-72
137-185


PCOA2_POVMC
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
 5-72
137-185


PCOA2_POVMK
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
15-56
177-211


PCOA2_SV40
COAT PROTEIN VP2
SIMIAN VIRUS 40
14-62
228-262
318-352


PCOAT_ABMVW
COAT PROTEIN
ABUTILON MOSAIC VIRUS
180-214




(ISOLATE WEST INDIA


PCOAT_ACLSV
COAT PROTEIN
APPLE CHLOROTIC LEAF SPOT VIRUS
154-188


PCOAT_AEDEV
COAT PROTEIN VP1
AEDES DENSONUCLEOSIS VIRUS
243-284


PCOAT_AMCV
COAT PROTEIN
ARTICHOKE MOTTLED CRINKLE VIRUS
36-70
100-134


PCOAT_BLRV
COAT PROTEIN
BEAN LEAFROLL VIRUS
 89-123


PCOAT_BMV
COAT PROTEIN
BROME MOSAIC VIRUS
36-73


PCOAT_BYDV1
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
163-197


PCOAT_BYDVM
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
163-197


PCOAT_BYDVP
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
164-198


PCOAT_BYDVR
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
164-198


PCOAT_CAMVC
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
56-90
186-223


PCOAT_CAMVD
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
53-91
187-224


PCOAT_CAMVE
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
56-90
186-223


PCOAT_CAMVN
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
56-90
185-222


PCOAT_CAMVS
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
53-91
187-224


PCOAT_CARMV
COAT PROTEIN
CARNATION MOTTLE VIRUS
13-51


PCOAT_CCMV
COAT PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
141-178


PCOAT_CERV
PROBABLE COAT PROTEIN
CARNATION ETCHED RING VIRUS
192-226


PCOAT_CHVP1
MAJOR CAPSID PROTEIN
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
393-435


PCOAT_CLVK
COAT PROTEIN
CASSAVA LATENT VIRUS
197-231


PCOAT_CLVN
COAT PROTEIN
CASSAVA LATENT VIRUS
197-231


PCOAT_CMVFC
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVI
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVP6
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVQ
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVWL
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVY
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CNV
COAT PROTEIN
CUCUMBER NECROSIS VIRUS
328-365


PCOAT_CSMV
COAT PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
184-218


PCOAT_CTV36
COAT PROTEIN
CITRUS TRISTEZA VIRUS
 79-120


PCOAT_CYMV
COAT PROTEIN
CLOVER YELLOW MOSAIC VIRUS
162-204


PCOAT_EPMV
COAT PROTEIN
EGGPLANT MOSAIC VIRUS
40-74


PCOAT_FCVC6
COAT PROTEIN
FELINE CALICIVIRUS
432-466
566-600


PCOAT_FCVF4
COAT PROTEIN
FELINE CALICIVIRUS
502-550
566-600


PCOAT_FCVF9
COAT PROTEIN
FELINE CALICIVIRUS
519-553
569-603


PCOAT_FMVD
PROBABLE COAT PROTEIN
FIGWORT MOSAIC VIRUS
144-199
206-247
449-483


PCOAT_FXMV
COAT PROTEIN
FOXTAIL MOSAIC VIRUS
168-220


PCOAT_IRV1
CAPSID PROTEIN
TIPULA IRIDESCENT VIRUS
 90-124


PCOAT_IRV22
CAPSID PROTEIN
SIMULIUM IRIDESCENT VIRUS
 90-124


PCOAT_IRV6
CAPSID PROTEIN
CHILO IRIDESCENT VIRUS
51-85


PCOAT_LSV
COAT PROTEIN
LILY SYMPTOMLESS VIRUS
32-70
255-289


PCOAT_MSTV
COAT PROTEIN
MAIZE STRIPE VIRUS
 7-76
 84-121


PCOAT_MSVK
COAT PROTEIN
MAIZE STREAK VIRUS
187-221


PCOAT_MSVN
COAT PROTEIN
MAIZE STREAK VIRUS
187-221


PCOAT_MSVS
COAT PROTEIN
MAIZE STREAK VIRUS
187-221


PCOAT_ORSV
COAT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
105-139


PCOAT_PAVBO
COAT PROTEIN VP2
BOVINE PARVOVIRUS
380-414
444-480


PCOAT_PAVC7
COAT PROTEIN VP1
CANINE PARVOVIRUS
497-531


PCOAT_PEBV
COAT PROTEIN
PEA EARLY BROWNING VIRUS
 73-114


PCOAT_POPMV
COAT PROTEIN
POPLAR MOSAIC VIRUS
36-81


PCOAT_PPMVS
COAT PROTEIN
PEPPER MILD MOTTLE VIRUS
104-138


PCOAT_PVSP
COAT PROTEIN
POTATO VIRUS
38-72
251-292


PCOAT_PYMVV
COAT PROTEIN
POTATO YELLOW MOSAIC VIRUS
190-224


PCOAT_RBDV
COAT PROTEIN
RASPBERRY BUSHY DWARF VIRUS
10-44
140-199


PCOAT_RCNMV
COAT PROTEIN
RED CLOVER NECROTIC MOSAIC VIRUS
272-306


PCOAT_RSV
COAT PROTEIN
RICE STRIPE VIRUS
34-68
 83-120
259-309


PCOAT_SLCV
COAT PROTEIN
SQUASH LEAF CURL VIRUS
190-224


PCOAT_SMWLM
COAT PROTEIN
SATELLITE MAIZE WHITE LINE MOSAIC VIRUS
 66-100


PCOAT_SOCMV
COAT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
128-166


PCOAT_STNV1
COAT PROTEIN
SATELLITE TOBACCO NECROSIS VIRUS 1
 2-50


PCOAT_STNV2
COAT PROTEIN
SATELLITE TOBACCO NECROSIS VIRUS 2
38-72


PCOAT_TAMV
GENOME POLYPROTEIN
TAMARILLO MOSAIC VIRUS
 7-55


PCOAT_TAV
COAT PROTEIN
TOMATO ASPERMY VIRUS
14-48


PCOAT_TBSVB
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS
 1-37
43-77


PCOAT_TBSVC
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS
44-78
100-134


PCOAT_TCV
COAT PROTEIN
TURNIP CRINKLE VIRUS
12-46


PCOAT_TGMV
COAT PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
186-220


PCOAT_TMGMV
COAT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS
103-137


PCOAT_TMV
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMV06
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVCO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
 76-138


PCOAT_TMVDA
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVER
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVHR
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVOM
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVTO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TRVCA
COAT PROTEIN
TOBACCO RATTLE VIRUS
 71-109


PCOAT_TRVTC
COAT PROTEIN
TOBACCO RATTLE VIRUS
 69-103


PCOAT_TYDVA
COAT PROTEIN
TOBACCO YELLOW DWARF VIRUS
 2-36


PCOAT_TYMV
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS
41-75


PCOAT_TYMVA
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS
41-75


PCOAT_WCMVO
COAT PROTEIN
WHITE CLOVER MOSAIC VIRUS
163-197


PCORA_HPBGS
CORE ANTIGEN
GROUND SQUIRREL HEPATITIS VIRUS
 94-135


PCORA_HPBV9
CORE ANTIGEN
HEPATITIS B VIRUS
111-149


PCORA_WHV1
CORE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 1
 62-106


PCORA_WHV8
CORE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
 62-106


PD250_ASFB7
PROTEIN D250R
AFRICAN SWINE FEVER VIRUS
198-232


PDNB2_ADE02
EARLY E2A DNA-BINDING PROTEIN
HUMAN ADENOVIRUS TYPE 2
291-336


PDNB2_ADE05
EARLY E2A DNA-BINDING PROTEIN
HUMAN ADENOVIRUS TYPE 5
291-336


PDNB1_EBV
MAJOR DNA-BINDING PROTEIN
EPSTEIN-BARR VIRUS
251-252
718-752
 974-
1027-







1009
1068


PDNB1_HCMVA
MAJOR DNA-BINDING PROTEIN
HUMAN CYTOMEGALOVIRUS
338-372
1013-






1070


PDNB1_HSV11
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS
557-595
599-640
769-803
1079-








1140


PDNB1_HSV1F
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS
557-595
599-640
769-803
1079-








1140


PDNB1_HSV1K
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS
557-595
599-640
769-803
1079-








1140


PDNB1_HSVB2
MAJOR DNA-BINDING PROTEIN
BOVINE HERPESVIRUS TYPE 2
552-591
599-633
1048-







1131


PDNB1_HSVE1
MAJOR DNA-BINDING PROTEIN
EQUINE HERPESVIRUS TYPE 1
273-314


PDNB1_HSVEB
MAJOR DNA-BINDING PROTEIN
EQUINE HERPESVIRUS TYPE 1
617-658
1107-






1148


PDNB1_HSVSA
MAJOR DNA-BINDING PROTEIN
HERPESVIRUS SAIMIRI
222-259
330-367
506-557
873-907


PDNB1_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS
584-618
 987-






1125


PDNB1_SCMVC
MAJOR DNA-BINDING PROTEIN
SIMIAN CYTOMEGALOVIRUS
525-562


PDNB1_VZVD
MAJOR DNA-BINDING PROTEIN
VARICELLA-ZOSTER VIRUS
613-650
1043-






1077


PDNL1_ASFM2
DNA LIGASE
AFRICAN SWINE FEVER VIRUS
 72-106


PDNL1_VACCC
DNA LIGASE
VACCINIA VIRUS
395-436


PDNL1_VACCV
DNA LIGASE
VACCINIA VIRUS
395-436


PDNL1_VARV
DNA LIGASE
VARIOLA VIRUS
395-436


PDPOL_ADE02
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 2
667-743


PDPOL_ADE05
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 5
667-743


PDPOL_ADE07
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 7
733-809


PDPOL_ADE12
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 12
665-741


PDPOL_CBEPV
DNA POLYMERASE
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
23-64
202-240


PDPOL_CHVN2
DNA POLYMERASE
CHLORELLA VIRUS NY-2A
247-284


PDPOL_CHVP1
DNA POLYMERASE
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
247-284


PDPOL_FOWPV
DNA POLYMERASE
FOWLPOX VIRUS
17-51
 80-114
371-412


PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
753-787
1033-






1074


PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
 5-39


PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (STRAIN CHINA)
 5-39


PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
 5-39
297-338




(WHITE SHANGHAI DUCK ISOLATE S3


PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS VIRUS
291-325


PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
 5-39
224-265
557-595


PDPOL_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE AYW)
201-235


PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADYW)
201-235


PDPOL_HSV11
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
511-559


PDPOL_HSV1A
DNA POLYMERASE
HERPES SIMPLEX VIRUS
511-559




(TYPE 1/STRAIN ANGELOTTI


PDPOL_HSV1K
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
511-559


PDPOL_HSV1S
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16)
511-559


PDPOL_HSV21
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 186)
512-560


PDPOL_HSVEB
DNA POLYMERASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
494-528


PDPOL_HSV11
DNA POLYMERASE
ICTALURID HERPESVIRUS 1
33-67
328-366
401-435
706-749
808-858




(CHANNEL CATFISH VIRUS)


PDPOL_NPVAC
DNA POLYMERASE
AUTOGRAPHA CALIFORNICA NUCLEAR
595-646




POLYHEDROSIS VIRUS


PDPOL_VACCC
DNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
627-683
770-818
828-862


PDPOL_VACCV
DNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
627-683
770-818
828-862


PDPOL_VARV
DNA POLYMERASE
VARIOLA VIRUS
626-682
769-817
827-861


PDPOL_VZVD
DNA POLYMERASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
473-533


PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 1
285-326


PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 59
290-331


PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
290-331


PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
289-330


PDPOL_WHV81
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
290-331




(INFECTIOUS CLONE)


PDPOM_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE AYW)
201-235


PDUT_HSVEB
DEOXYURIDINE 5′-TRIPHOSPHATE
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P
135-169



NUCLEOTIDOHY


PDUT_HSVSA
DEOXYURIDINE 5′-TRIPHOSPHATE
HERPESVIRUS SAIMIRI (STRAIN 11)
179-223



NUCLEOTIDOHY


PE1A_ADE41
EARLY E1A 27 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
107-141


PE1BL_ADE40
E1B PROTEIN, LARGE T-ANTIGEN
HUMAN ADENOVIRUS TYPE 40
102-166


PE1BS_ADE02
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 2
103-137


PE1BS_ADE05
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 5
103-137


PE1BS_ADE12
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 12
 96-131


PE1BS_ADE40
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 40
100-134


PE1BS_ADE41
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 41
100-134


PE1BS_ADEM1
E1B PROTEIN, SMALL T-ANTIGEN
MOUSE ADENOVIRUS TYPE 1
199-173


PE314_ADE02
EARLY E3B 14 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
 2-39


PE314_ADE03
EARLY E3 15.3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 3
 8-49


PE314_ADE05
EARLY E3 14.5 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
 2-39


PE314_ADE07
EARLY E3 15.3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
 7-48


PE320_ADE35
EARLY E3 20.3 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 35
 70-107


PE321_ADE35
EARLY E3 20.6 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 35
125-169


PE411_ADE02
PROBABLE EARLY E4 11 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
10-44


PE411_ADE05
PROBABLE EARLY E4 11 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
10-44


PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN B95-8)
123-157


PEBN4_EBV
EBNA-4 NUCLEAR PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
487-521


PEFT1_VARV
EARLY TRANSCRIPTION FACTOR
VARIOLA VIRUS
23-71
307-341



70 KD SUBUNIT


PENV1_FRSFV
ENV POLYPROTEIN PRECURSOR
FRIEND SPLEEN FOCUS-FORMING VIRUS
341-375


PENV2_FRSFV
ENV POLYPROTEIN PRECURSOR
FRIEND SPLEEN FOCUS-FORMING VIRUS
341-378


PENV_AVIRE
ENV POLYPROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
420-472


PENV_AVISN
ENV POLYPROTEIN
AVIAN SPLEEN NECROSIS VIRUS
426-478


PENV_BAEVM
ENV POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
390-456


PENV_BIV06
ENV POLYPROTEIN PRECURSOR
BOVINE IMMUNODEFICIENCY VIRUS
10-44
 88-122
221-255
530-610
635-691




(ISOLATE 106)


PENV_BIV27
ENV POLYPROTEIN PRECURSOR
BOVINE IMMUNODEFICIENCY VIRUS
10-44
 88-122
159-193
250-284
559-639
664-724




(ISOLATE 127)


PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379




(AMERICAN ISOLATE FLK)


PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379




(AUSTRALIAN ISOLATE)


PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379




(AMERICAN ISOLATE VDM)


PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379




(BELGIUM ISOLATE LB285)


PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379




BELGIUM ISOLATE LB59)


PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-379




(JAPANESE ISOLATE BLV-1)


PENV_CAEVC
ENV POLYPROTEIN PRECURSOR
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
157-196
615-720
751-785
847-895




(STRAIN CORK)


PENV_CAEVG
ENV POLYPROTEIN PRECURSOR
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
154-193
613-718
749-783
845-893




(STRAIN G63)


PENV_EIAV1
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
668-716




(CLONE P3.2-1)


PENV_EIAV2
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-692




(CLONE P3.2-2)


PENV_EIAV3
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716




(CLONE P3.2-3)


PENV_EIAV5
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
38-76
437-526
560-594
659-693




(CLONE P3.2-5)


PENV_EIAV9
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716




(CLONE 1369)


PENV_EIAVC
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716




(CLONE CL22)


PENV_EIAVW
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716




(STRAIN WSU5)


PENV_EIAVY
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS
39-76
436-525
559-593
658-716




(ISOLATE WYOMING)


PENV_FENV1
ENV POLYPROTEIN PRECURSOR
FELINE ENDOGENOUS VIRUS ECE1
503-555
567-604


PENV_FIVPE
ENVELOPE POLYPROTEIN PRECURSOR
FELINE IMMUNODEFICIENCY VIRUS
610-690
715-756




(ISOLATE PETALUMA)


PENV_FIVSD
ENVELOPE POLYPROTEIN PRECURSOR
FELINE IMMUNODEFICIENCY VIRUS
601-688
713-754




(ISOLATE SAN DIEGO)


PENV_FIVT2
ENVELOPE POLYPROTEIN PRECURSOR
FELINE IMMUNODEFICIENCY VIRUS
 60-122
609-689
714-755




(ISOLATE TM2)


PENV_FLVC6
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA PROVIRUS (CLONE CFE-6)
497-549
561-595


PENV_FLVGL
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS
478-530
542-576




(STRAIN A/GLASGOW-1)


PENV_FLVLB
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS
498-550
562-596




(STRAIN LAMBDA-B1)


PENV_FLVSA
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS (STRAIN SARMA)
475-527
539-573


PENV_FOAMV
ENV POLYPROTEIN
HUMAN SPUMARETROVIRUS
 1-41
154-205
321-355
563-693
866-903


PENV_FSVGA
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS
498-550
562-596




(STRAIN GARDNER-ARNSTEIN)


PENV_FSVGB
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS
478-530
542-576




(STRAIN GA)


PENV_FSVSM
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS
481-524
545-579




(STRAIN SM)


PENV_FSVST
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS
498-532




(STRAIN SNYDER-THEILEN)


PENV_GALV
ENV POLYPROTEIN PRECURSOR
GIBBON APE LEUKEMIA VIRUS
523-575
587-621


PENV_HTL1A
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
321-383




(STRAIN ATK)


PENV_HTL1C
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
316-383




(CARIBBEAN ISOLATE)


PENV_HTL1M
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
321-383




(ISOLATE MT-2)


PENV_HTLV2
ENV POLYPROTEIN PRECURSOR
HUMAN T-CELL LEUKEMIA VIRUS TYPE II
317-377


PENV_HV1A2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
497-593
612-711
766-845



PRECURSOR
(ARV2/SF2 ISOLATE


PENV_HV1B1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-594
610-712
767-843



PRECURSOR
(BH10 ISOLATE)


PENV_HV1B8
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-589
605-707
762-838



PRECURSOR
(BH8 ISOLATE)


PENV_HV1BN
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-365
501-590
609-708
763-831



PRECURSOR (CONT
(BRAIN ISOLATE)


PENV_HV1BR
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
510-599
615-717
772-841



PRECURSOR
(BRU ISOLATE)


PENV_HV1C4
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
342-376
510-606
626-724
779-855



PRECURSOR
(CDC-451 ISOLATE)


PENV_HV1EL
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
255-296
502-591
607-709
768-829



PRECURSOR
(ELI ISOLATE)


PENV_HV1H2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-594
610-712
767-836



PRECURSOR
(HXB2 ISOLATE)


PENV_HV1H3
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-594
610-712
767-843



PRECURSOR
(HXB3 ISOLATE)


PENV_HV1J3
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-377
517-605
622-723
778-843



PRECURSOR
(JH3 ISOLATE)


PENV_HV1JR
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
329-363
497-586
603-704
759-835



PRECURSOR
(JRCSF ISOLATE)


PENV_HV1KB
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 88-122
338-372
511-545
555-599
618-677
681-718
772-848



PRECURSOR
(STRAIN KB-1-GP32)


PENV_HV1MA
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
259-300
507-596
617-714
770-825



PRECURSOR
(MAL ISOLATE)


PENV_HV1MF
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
503-592
622-710
765-841



PRECURSOR
(MFA ISOLATE)


PENV_HV1MN
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
336-370
506-595
617-713
774-841



PRECURSOR
(MN ISOLATE)


PENV_HV1N5
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
326-360



PRECURSOR
(NEW YORK-5 ISOL


PENV_HV1ND
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
249-290
495-584
601-702
757-825



PRECURSOR
(NDK ISOLATE)


PENV_HV1OY
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
336-370
497-593
610-711
766-842



PRECURSOR
(OY1 ISOLATE)


PENV_HV1PV
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-594
610-712
767-843



PRECURSOR
(PV22 ISOLATE)


PENV_HV1RH
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
344-378
507-603
619-721
776-852



PRECURSOR
(RF/HAT ISOLATE)


PENV_HV1S1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
496-585
602-703
758-830



PRECURSOR
(SF162 ISOLATE)


PENV_HV1S3
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
332-366
494-590
607-708
763-837



PRECURSOR
(SF33 ISOLATE)


PENV_HV1SC
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-365
498-584
611-712
767-834



PRECURSOR
(SC ISOLATE)


PENV_HV1W1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-365
498-594
611-712
767-836



PRECURSOR
(WMJ1 ISOLATE)


PENV_HV1W2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
327-361
489-594
602-703
758-827



PRECURSOR
(WMJ2 ISOLATE)


PENV_HV1Z2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
255-296
502-591
610-709
764-831



PRECURSOR
(Z2/CDC-Z34 ISOLAT


PENV_HV1Z3
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
251-292



PRECURSOR
(ZAIRE 3 ISOLATE)


PENV_HV1Z6
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
256-297
504-593
609-711
766-840



PRECURSOR
(ZAIRE 6 ISOLATE)


PENV_HV1Z8
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
266-307
512-601
617-675
682-719
774-831



PRECURSOR
(Z-84 ISOLATE)


PENV_HV1ZH
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
522-594
612-671
675-712
777-839



PRECURSOR
(ZAIRE HZ321 ISOLA


PENV_HV2BE
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
447-481
510-595
617-680



PRECURSOR
(ISOLATE BEN)


PENV_HV2CA
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
512-597
619-709



PRECURSOR
(ISOLATE CAM2)


PENV_HV2D1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
501-586
608-698



PRECURSOR
(ISOLATE D194)


PENV_HV2G1
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
439-473
502-587
609-699



PRECURSOR
(ISOLATE GHANA-1)


PENV_HV2NZ
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
488-587
609-699



PRECURSOR
(ISOLATE NIH-Z)


PENV_HV2RO
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
511-596
618-708



PRECURSOR
(ISOLATE ROD)


PENV_HV2S2
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
442-476
505-590
612-702



PRECURSOR
(ISOLATE ST/24.1C#


PENV_HV2SB
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
526-588
614-700



PRECURSOR
(ISOLATE SBLISY)


PENV_HV2ST
ENVELOPE POLYPROTEIN GP160
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
442-476
505-590
612-702



PRECURSOR
(ISOLATE ST)


PENV_IPMAE
ENV POLYPROTEIN PRECURSOR
MOUSE INTRACISTERNAL A-PARTICLE
367-422
465-527


PENV_JSRV
ENV POLYPROTEIN PRECURSOR
SHEEP PULMONARY ADENOMATOSIS VIRUS
403-455
571-605


PENV_MCFF
ENV POLYPROTEIN PRECURSOR
MINK CELL FOCUS-FORMING MURINE
473-525
537-571




LEUKEMIA VIRUS


PENV_MCFF3
ENV POLYPROTEIN PRECURSOR
MINK CELL FOCUS-FORMING MURINE
474-526
538-572



(COAT POLYPROTE
LEUKEMIA VIRUS (ISOLA


PENV_MLVAV
ENV POLYPROTEIN PRECURSOR
AKV MURINE LEUKEMIA VIRUS
503-555
567-601


PENV_MLVCB
ENV POLYPROTEIN PRECURSOR
CAS-BR-E MURINE LEUKEMIA VIRUS
498-550
562-596


PENV_MLVF5
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57)
520-564
576-610


PENV_MLVFF
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS
520-564
576-610




(ISOLATE FB29)


PENV_MLVFP
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS
520-564
576-610




(ISOLATE PVC-211)


PENV_MLVHO
ENV POLYPROTEIN PRECURSOR
HOMULV MURINE LEUKEMIA VIRUS
504-551
563-597


PENV_MLVKI
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA VIRUS
40-92
104-138


PENV_MLVMO
ENV POLYPROTEIN PRECURSOR
MOLONEY MURINE LEUKEMIA VIRUS
502-554
566-600


PENV_MLVRD
ENV POLYPROTEIN PRECURSOR
RADIATION MURINE LEUKEMIA VIRUS
497-549
561-595


PENV_MLVRK
ENV POLYPROTEIN PRECURSOR
RADIATION MURINE LEUKEMIA VIRUS
497-549
561-595




(STRAIN KAPLAN)


PENV_MMTVB
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
477-539
556-612


PENV_MMTVG
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
477-539
556-612


PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
408-474


PENV_MSVFB
ENV POLYPROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
43-95
107-141


PENV_OMVVS
ENV POLYPROTEIN PRECURSOR
OVINE LENTIVIRUS (STRAIN SA-OMVV)
22-64
185-223
664-746
780-816


PENV_RMCFV
ENV POLYPROTEIN PRECURSOR
RAUSCHER MINK CELL FOCUS-INDUCING VIRUS
484-528
540-574


PENV_RSFFV
ENV POLYPROTEIN PRECURSOR
RAUSCHER SPLEEN FOCUS-FORMING VIRUS
342-376


PENV_SFV1
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
 1-41
101-140
154-205
321-355
563-651
658-693
866-904


PENV_SFV3L
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/
 5-46
158-209
319-357
560-706
863-901




STRAIN LK3)


PENV_SIVA1
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
269-310
551-623
643-693



PRECURSOR
(AGM155 ISOLATE)


PENV_SIVAG
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
556-628
651-699
808-852



PRECURSOR
(AGM3 ISOLATE)


PENV_SIVAI
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
257-291
336-370
535-607
627-684
792-840



PRECURSOR
(ISOLATE AGM/CLONE GR1


PENV_SIVAT
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
264-298
549-621
644-692
796-833



PRECURSOR
(TYO-1 ISOLATE)


PENV_SIVCZ
ENVELOPE POLYPROTEIN GP160
CHIMPANZEE IMMUNODEFICIENCY VIRUS
253-291
330-365
512-584
669-703
803-837



PRECURSOR
(SIV(CPZ))


PENV_SIVGB
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
566-654
677-725



PRECURSOR
(ISOLATE GB1)


PENV_SIVM1
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
114-151
465-506
528-613
635-725
809-864



PRECURSOR
(MM142-83 ISOLATE)


PENV_SIVM2
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
 71-109
161-219
245-286



PRECURSOR
(MM251 ISOLATE)


PENV_SIVMK
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
464-505
540-612
638-724



PRECURSOR
(K6W ISOLATE)


PENV_SIVML
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
464-505
540-612
638-724



PRECURSOR
(K78 ISOLATE)


PENV_SIVS4
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
466-509
517-616
638-728
812-853



PRECURSOR
(F236/SMH4 ISOLATE)


PENV_SIVSP
ENVELOPE POLYPROTEIN GP160
SIMIAN IMMUNODEFICIENCY VIRUS
470-513
521-620
642-732
811-848



PRECURSOR
(PBJ/BC13 ISOLATE)


PENV_SMRVH
ENV POLYPROTEIN PRECURSOR
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
400-466


PENV_SRV1
ENV POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
409-475


PENV_VILV
ENV POLYPROTEIN PRECURSOR
VISNA LENTIVIRUS (STRAIN 1514)
21-62
184-222
637-740
773-809


PENV_VILV1
ENV POLYPROTEIN PRECURSOR
VISNA LENTIVIRUS
21-62
184-222
643-746
780-816




(STRAIN 1514/CLONE LV1-1KS1)


PENV_VILV2
ENV POLYPROTEIN PRECURSOR
VISNA LENTIVIRUS
21-62
184-222
645-748
782-818




(STRAIN 1514/CLONE LV1-1KS2)


PERBA_AVIER
ERBA ONCOGENE PROTEIN
AVIAN ERYTHROBLASTOSIS VIRUS
106-140




(STRAIN ES4)


PETF1_FOWP1
EARLY TRANSCRIPTION FACTOR
FOWLPOX VIRUS (STRAIN FP-1)
190-224
553-587



70 KD SUBUNIT


PETF1_SFVKA
EARLY TRANSCRIPTION FACTOR
SHOPE FIBROMA VIRUS (STRAIN KASZA)
37-71
267-340
550-587



70 KD SUBUNIT


PETF1_VACCC
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
23-71
307-341



70 KD SUBUNIT


PETF1_VACCV
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN WR)
23-71
307-341



70 KD SUBUNIT


PETF2_VACCC
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
52-97
174-208



82 KD SUBUNIT


PETF2_VARV
EARLY TRANSCRIPTION FACTOR
VARIOLA VIRUS
52-97
174-208



82 KD SUBUNIT


PEXON_HCMVA
ALKALINE EXONUCLEASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 80-114


PEXON_HSVEB
ALKALINE EXONUCLEASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
 89-141


PEXON_PRVNJ
ALKALINE EXONUCLEASE
PSEUDORABIES VIRUS (STRAIN NIA-3)
 82-120


PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
109-157
342-383


PFIB2_ADE40
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
182-237


PFIB2_ADE41
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
182-223


PFIBP_ADE03
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 3
156-194


PFIBP_ADE07
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 7
176-210


PFIBP_ADE40
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
303-352


PFIBP_ADE41
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
320-366


PFIBP_ADEB3
FIBER PROTEIN
BOVINE ADENOVIRUS TYPE 3
181-215
585-626


PFOSX_MSVFR
V-FOS/FOX TRANSFORMING PROTEIN
FBR MURINE OSTEOSARCOMA VIRUS
131-169


PFOS_AVINK
P55-V-FOS TRANSFORMING PROTEIN
AVIAN RETROVIRUS NK24
109-152


PFOS_MSVFB
P55-V-FOS TRANSFORMING PROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
155-193


PGAGC_AVISC
P47(GAG-CRK) PROTEIN
AVIAN SARCOMA VIRUS (STRAIN CT10)
 57-101


PGAG_AVEV1
GAG POLYPROTEIN
AVIAN ENDOGENOUS VIRUS EV-1
57-94


PGAG_AVEV2
GAG POLYPROTEIN
AVIAN ENDOGENOUS ROUS-ASSOCIATED
 6-43




VIRUS-0


PGAG_AVIMC
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
57-94


PGAG_AVIMD
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HB1
57-94


PGAG_AVISU
CORE PROTEIN P19
AVIAN SARCOMA VIRUS (STRAIN UR2)
57-94


PGAG_AVISY
GAG POLYPROTEIN
AVIAN SARCOMA VIRUS (STRAIN Y73)
57-94


PGAG_BIV06
GAG POLYPROTEIN (P53)
BOVINE IMMUNODEFICIENCY VIRUS
 1-41




(ISOLATE 106)


PGAG_EIAVY
GAG POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
 61-118




(CLONE CL22)


PGAG_FIVPE
GAG POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
 76-110




(ISOLATE PETALUMA)


PGAG_FIVSD
GAG POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
 76-110




(ISOLATE SAN DIEGO)


PGAG_FIVT2
GAG POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
 76-110




(ISOLATE TM2)


PGAG_FLV
GAG POLYPROTEIN
FELINE LEUKEMIA VIRUS
496-537


PGAG_FOAMV
GAG POLYPROTEIN
HUMAN SPUMARETROVIRUS
130-186
391-425
439-480
607-655


PGAG_FSVMD
GAG POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN MCDONOUGH)
499-534


PGAG_FUJSV
GAG POLYPROTEIN
FUJINAMI SARCOMA VIRUS
57-94


PGAG_GALV
GAG POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
393-444


PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 87-133
294-328




(ARV2/SF2 ISOLATE


PGAG_HV1B1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-131
292-326




(BH10 ISOLATE)


PGAG_HV1B5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-131
292-326




(BH5 ISOLATE)


PGAG_HV1BR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-131
292-326




(BRU ISOLATE)


PGAG_HV1C4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-131
292-326




(CDC-451 ISOLATE)


PGAG_HV1EL
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 93-131
292-326




(ELI ISOLATE)


PGAG_HV1H2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-131
292-326




(HXB2 ISOLATE)


PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 87-131
292-326




(JH3 ISOLATE)


PGAG_HV1JR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 87-131
292-326




(JRCSF ISOLATE)


PGAG_HV1MA
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-137




(MAL ISOLATE)


PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 87-134
295-329




(MN ISOLATE)


PGAG_HV1N5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-131
292-326




(NEW YORK-5 ISOL


PGAG_HV1ND
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 87-128
289-323




(NDK ISOLATE)


PGAG_HV1OY
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-131
292-326




(OYI ISOLATE)


PGAG_HV1PV
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-131
292-326




(PV22 ISOLATE)


PGAG_HV1RH
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 90-131
292-326




(RF/HAT ISOLATE)


PGAG_HV1U4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 87-127




(STRAIN UGANDAN


PGAG_HV1W2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
292-326




(WMJ2 ISOLATE)


PGAG_HV1Z2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 87-132
293-327




(Z2/CDC-Z34 ISOLAT


PGAG_HV2SB
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
292-326
293-327




(ISOLATE SBLISY)


PGAG_IPHA
RETROVIRUS-RELATED GAG POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
 93-127
320-357


PGAG_IPMA
RETROVIRUS-RELATED GAG POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
 67-103


PGAG_IPMAE
RETROVIRUS-RELATED GAG POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
 89-133
138-172


PGAG_JSRV
GAG POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
470-504


PGAG_MMTVB
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
 83-151
156-190


PGAG_MMTVG
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
 83-151
156-190


PGAG_MPMV
GAG POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
222-260


PGAG_RSVP
GAG POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
57-94


PGAG_SCVLA
MAJOR COAT PROTEIN
SACCHAROMYCES CEREVISIAE VIRUS L-A
102-139
490-531




(SCV-L-A)


PGAG_SFV1
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
128-177
378-416
583-634


PGAG_SFV3L
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/
373-407
435-522
591-632




STRAIN LK3)


PGAG_SIVA1
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
302-336




(AGM155 ISOLATE)


PGAG_SIVAG
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
306-340




(AGM3 ISOLATE)


PGAG_SIVAI
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
183-217
473-507




(ISOLATE AGM/CLONE GR1


PGAG_SIVAT
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
302-336




(TYO-1 ISOLATE)


PGAG_SIVCZ
GAG POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
301-335




(SIV(CPZ))


PGAG_SIVGB
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
163-204
223-267
283-317




(ISOLATE GB1)


PGAG_SMSAV
GAG POLYPROTEIN
SIMIAN SARCOMA VIRUS
394-431


PHELI_HSV11
PROBABLE HELICASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
172-206
769-820


PHELI_HSV2H
PROBABLE HELICASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
468-502
670-721


PHELI_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI (STRAIN 11)
158-203
413-449
599-633


PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
445-517
782-821


PHEMA_CVBF
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
208-242


PHEMA_CVBLY
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
208-242


PHEMA_CVBM
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
208-242


PHEMA_CVBQ
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC),
208-242


PHEMA_CVHOC
HEMAGGLUTININ-ESTERASE PRECURSOR
HUMAN CORONAVIRUS (STRAIN OC43)
208-242


PHEMA_IAAIC
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/AICHI/2/68)
380-456


PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79)
364-440


PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454




(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)


PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454




(STRAIN A/CHICKEN/ALABAMA/1/75)


PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
108-142
375-475
494-528




(STRAIN A/CHICKEN/GERMANY/N/49)


PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
360-452
487-532




(STRAIN A/CHICKEN/PENNSYLVANIA/1/83)


PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
360-452
487-532




(STRAIN A/CHICKEN/PENNSYLVANIA/1370/


PHEMA_IACKS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-469
504-549




(STRAIN A/CHICKEN/SCOTLAND/59)


PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
377-469




(STRAIN A/CHICKEN/VICTORIA/1/85)


PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454




(STRAIN A/DUCK/ALBERTA/28/76)


PHEMA_IADA2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-476
495-547




(STRAIN A/DUCK/ALBERTA/60/76)


PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-453




(STRAIN A/DUCK/ALBERTA/78/76)


PHEMA_IADA4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-478
506-548




(STRAIN A/DUCK/ALBERTA/35/76)


PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454




(STRAIN A/DUCK/CZECHOSLOVAKIA/56)


PHEMA_IADE1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55
377-472




(STRAIN A/DUCK/ENGLAND/1/56)


PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/DUCK/HOKKAIDO/5/77)


PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/DUCK/HOKKAIDO/8/80)


PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/DUCK/HOKKAIDO/33/80)


PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/DUCK/HOKKAIDO/7/82)


PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/DUCK/HOKKAIDO/21/82)


PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/DUCK/HOKKAIDO/9/85)


PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/DUCK/HOKKAIDO/10/85)


PHEMA_IADIR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-471
506-551




(STRAIN A/DUCK/IRELAND/113/83)


PHEMA_IADM1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55




(STRAIN A/DUCK/MEMPHIS/546/76)


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456




(STRAIN A/DUCK/MEMPHIS/928/74)


PHEMA_IADNY
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55




(STRAIN A/DUCK/NEW YORK/12/78)


PHEMA_IADNZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454




(STRAIN A/DUCK/NEW ZEALAND/31/76)


PHEMA_IADU1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55




(STRAIN A/DUCK/UKRAINE/1/60)


PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456




(STRAIN A/DUCK/UKRAINE/1/63)


PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456




(STRAIN A/ENGLAND/321/77


PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-477




(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK


PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454




(STRAIN A/GREY TEAL/AUSTRALIA/2/79)


PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-473




(STRAIN A/GULL/MARYLAND/704/77)


PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-476




(STRAIN A/GULL/ASTRAKHAN/227/84)


PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/ALGIERS/72)


PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537




(STRAIN A/EQUINE/CAMBRIDGE/1/63)


PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537




(STRAIN A/EQUINE/CAMBRIDGE/1/73)


PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
360-484
503-537




(STRAIN A/EQUINE/C.DETROIT/1/64)


PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
360-484
503-537




(STRAIN A/EQUINE/DETROIT/1/64)


PHEMA_IAHFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/FONTAINEBLEAU/76)


PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/KENTUCKY/2/86)


PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/KENTUCKY/1/87)


PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537




(STRAIN A/EQUINE/LEXINGTON/1/66)


PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537




(STRAIN A/EQUINE/LONDON/1416/73)


PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/MIAMI/1/63


PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/NEW MARKET/76)


PHEMA_IAHNN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537




(STRAIN A/EQUINE/NEW MARKET/1/77)


PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537




(STRAIN A/EQUINE/PRAGUE/1/56)


PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/ROMANIA/80)


PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/SANTIAGO/1/85)


PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537




(STRAIN A/EQUINE/SAO PAULO/1/76)


PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
360-484
503-537




(STRAIN A/EQUINE/SWITZERLAND/137/72)


PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/TENNESSEE/5/86)


PHEMA_IAHTO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/TOKYO/71)


PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-455




(STRAIN A/EQUINE/URUGUAY/1/63)


PHEMA_IAJAP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
375-467
502-547




(STRAIN A/JAPAN/305/57


PHEMA_IAKIE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
376-478
506-541




(STRAIN A/KIEV/59/79)


PHEMA_IALEN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
376-478
506-548




(STRAIN A/LENINGRAD/54/1)


PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
377-453




(STRAIN A/MALLARD/ASTRAKHAN/244/82)


PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
382-458




(STRAIN A/MALLARD/ASTRAKHAN/263/82)


PHEMA_IAMAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456




(STRAIN A/MALLARD/NEW YORK/6874/78)


PHEMA_IAME1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456




(STRAIN A/MEMPHIS/1/71)


PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456




(STRAIN A/MEMPHIS/102/72)


PHEMA_IAME6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/MEMPHIS/6/86)


PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
108-142
375-475




(STRAIN A/MINKS/SWEDEN/84)


PHEMA_IANT6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456




(STRAIN A/NT/60/68)


PHEMA_IAPIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-477
496-534




(STRAIN A/PILOT WHALE/MAINE/328/84)


PHEMA_IAPUE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
376-478
506-548




(STRAIN A/PUERTO RICO/8/34)


PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454




(STRAIN A/RUDDY TURNSTONE/NEW JERSE


PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454




(STRAIN A/SEAL/MASSACHUSETTS/133/82)


PHEMA_IASH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-474
506-552




(STRAIN A/SHEARWATER/AUSTRALIA/72)


PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
112-146
377-469




(STRAIN A/STARLING/VICTORIA/5156/85)


PHEMA_IATKI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-471
506-551




(STRAIN A/TURKEY/IRELAND/1378/83)


PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454




(STRAIN A/TURKEY/MINNESOTA/833/80


PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
392-470
504-548




(STRAIN A/TURKEY/ONTARIO/7732/66)


PHEMA_IATKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
378-454
493-540




(STRAIN A/TURKEY/ONTARIO/6118/68)


PHEMA_IATKR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
30-64
374-474




(STRAIN A/TURKEY/OREGON/71)


PHEMA_IATKW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
373-472
487-539




(STRAIN A/TURKEY/WISCONSIN/1/66)


PHEMA_IATRA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
21-55




(STRAIN A/TERN/AUSTRALIA/G70C/75)


PHEMA_IAUDO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
387-456




(STRAIN A/UDORN/307/72)


PHEMA_IAUSS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
376-478
506-548




(STRAIN A/USSR/90/77


PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
381-457




(STRAIN A/VICTORIA/3/75)


PHEMA_IAWIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
375-477
505-547




(STRAIN A/WILSON-SMITH/33)


PHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456




(STRAIN A/SWINE/COLORADO/1/77)


PHEMA_IAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/SWINE/HONG KONG/81/78)


PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
364-440




(STRAIN A/SWINE/HONG KONG/126/82)


PHEMA_IAZIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-478
506-548




(STRAIN A/SWINE/INDIANA/1726/88)


PHEMA_IAZNJ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
379-478
506-547




(STRAIN A/SWINE/NEW JERSEY/11/76)


PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS
380-456




(STRAIN A/SWINE/UKKEL/1/84


PHEMA_INBBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
388-473




(STRAIN B/BEIJING/1/87


PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
378-463




(STRAIN B/BONN/43)


PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
386-471




(STRAIN B/ENGLAND/222/82)


PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
381-463




(STRAIN B/HONG KONG/8/73)


PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
387-472




(STRAIN B/LEE/40)


PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
377-462




(STRAIN B/MARYLAND/59)


PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
381-468




(STRAIN B/MEMPHIS/6/86)


PHEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
386-471




(STRAIN B/OREGON/5/80)


PHEMA_INBSI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
386-471




(STRAIN B/SINGAPORE/222/79)


PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
379-464




(STRAIN B/USSR/100/83)


PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
381-466




(STRAIN B/VICTORIA/3/85)


PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS
388-473




(STRAIN B/VICTORIA/2/87)


PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-571




(STRAIN C/CALIFORNIA/78)


PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559




(STRAIN C/ENGLAND/892/83)


PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559




(STRAIN C/GREAT LAKES/1167/54)


PHEMA_INCHY
HEMAGGLUTININ
INFLUENZA C VIRUS
470-558




(STRAIN C/HYOGO/1/83)


PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
484-572




(STRAIN C/JOHANNESBURG/1/66)


PHEMA_INCKY
HEMAGGLUTININ
INFLUENZA C VIRUS
470-558




(STRAIN C/KYOTO/41/82)


PHEMA_INCMI
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
470-558




(STRAIN C/MISSISSIPPI/80)


PHEMA_INCNA
HEMAGGLUTININ
INFLUENZA C VIRUS
470-558




(STRAIN C/NARA/82)


PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559




(STRAIN C/PIG/BEIJING/10/81)


PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559




(STRAIN C/PIG/BEIJING/115/81)


PHEMA_INCP3
MEASLES VIRUS (STRAIN HALLE)
INFLUENZA C VIRUS
471-559




(STRAIN C/PIG/BEIJING/439/82)


PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559




(STRAIN C/TAYLOR/1233/47


PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
471-559




(STRAIN C/YAMAGATA/10/81)


PHEMA_MEASE
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN EDMONSTON)
46-90


PHEMA_MEASH
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN HALLE)
46-90


PHEMA_MEASI
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN IP-3-CA)
46-87


PHEMA_MEASY
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN YAMAGATA-1)
46-87


PHEMA_MUMP1
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN SBL-1
34-99


PHEMA_MUMPM
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
34-99


PHEMA_MUMPR
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN RW)
34-99


PHEMA_MUMPS
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN SBL)
34-99


PHEMA_NDVA
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
 8-52
477-529




(STRAIN AUSTRALIA-VICTORIA/32)


PHEMA_NDVB
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
 1-49




(STRAIN BEAUDETTE C/45)


PHEMA_NDVD
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
 1-52




(STRAIN D26/76)


PHEMA_NDVM
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
 1-52




(STRAIN MIYADERA/51)


PHEMA_NDVQ
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
 1-52




(STRAIN QUEENSLAND/66)


PHEMA_NDVTG
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
 1-49




(STRAIN TEXAS G.B./48)


PHEMA_NDVU
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS
 1-52




(STRAIN ULSTER/67)


PHEMA_PHODV
HEMAGGLUTININ-NEURAMINIDASE
PHOCINE DISTEMPER VIRUS
39-73


PHEMA_PI1HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 1 VIRUS
 66-110




(STRAIN WASHINGTON/1957)


PHEMA_PI2H
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 2 VIRUS
247-281


PHEMA_PI2HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 2 VIRUS
247-281




(STRAIN TOSHIBA)


PHEMA_PI3B
HEMAGGLUTININ-NEURAMINIDASE
BOVINE PARAINFLUENZA 3 VIRUS
38-93


PHEMA_PI3H4
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
 13-110
394-428




(STRAIN NIH 47885)


PHEMA_PI3HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
 20-110
394-428




(STRAIN AUS/124854/74)


PHEMA_PI3HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
 13-110
394-428




(STRAIN TEX/545/80)


PHEMA_PI3HU
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
 13-110
394-428




(STRAIN TEX/9305/82)


PHEMA_PI3HV
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
 13-110
394-428




(STRAIN TEX/12677/83)


PHEMA_PI3HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
 13-110
394-428




(STRAIN WASH/641/79)


PHEMA_PI3HX
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
 13-110
394-428




(STRAIN WASH/1511/73)


PHEMA_PI4HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 4A VIRUS
54-88




(STRAIN TOSHIBA)


PHEMA_RACVI
HEMAGGLUTININ PRECURSOR
RACCOON POXVIRUS
166-214
256-290


PHEMA_RINDK
HEMAGGLUTININ-NEURAMINIDASE
RINDERPEST VIRUS (STRAIN KABETE O)
46-87


PHEMA_RINDL
HEMAGGLUTININ-NEURAMINIDASE
RINDERPEST VIRUS (STRAIN L)
46-87
191-225


PHEMA_SEND5
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
 57-110


PHEMA_SENDF
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN FUSHIMI)
 57-110


PHEMA_SENDH
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN HARRIS)
 57-110


PHEMA_SENDJ
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN HVJ)
 57-110


PHEMA_SENDZ
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z)
 57-110


PHEMA_SV41
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 41
18-52
387-421


PHEMA_SV5
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 5 (STRAIN W3)
27-82


PHEMA_SV5LN
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 5 (ISOLATE HUMAN/LN)
27-82


PHEMA_VARV
HEMAGGLUTININ PRECURSOR
VARIOLA VIRUS
177-211


PHEX3_ADE02
PERIPENTONAL HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 2
 90-134



PROTEIN


PHEX3_ADE05
PERIPENTONAL HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 5
 90-134



PROTEIN


PHEX9_ADE02
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 2
 85-134


PHEX9_ADE05
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 5
 85-134


PHEX9_ADE07
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 7,
 93-138




AND HUMAN ADENOVIRUS TYPE


PHEX9_ADE12
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 12
 88-137


PHEX9_ADE41
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 41
 67-126


PHEX9_ADEC2
HEXON-ASSOCIATED PROTEIN
CANINE ADENOVIRUS TYPE 2
 53-103


PHEX9_ADENT
HEXON-ASSOCIATED PROTEIN
TUPAIA ADENOVIRUS
 61-109


PHEX_ADE02
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 2
341-386
433-467
583-624


PHEX_ADE05
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 5
330-379


PHEX_ADE40
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 40
303-352
408-449
553-587


PHEX_ADE41
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 41
306-355
555-589


PHEX_ADEB3
HEXON PROTEIN
BOVINE ADENOVIRUS TYPE 3
301-346
385-419
544-578
705-739


PHRG_COWPX
HOST RANGE PROTEIN
COWPOX VIRUS
320-395
455-489


PI226_ASFB7
LATE PROTEIN 1226R
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
110-151


PIBMP_CAMV4
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D4)
 3-44
378-419


PIBMP_CAMVB
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BARI 1)
379-420


PIBMP_CAMVC
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
 3-37
378-419


PIBMP_CAMVD
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
 3-44
378-419


PIBMP_CAMVE
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
 3-37
378-419


PIBMP_CAMVJ
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS
 3-37
378-419




(STRAIN S-JAPAN)


PIBMP_CAMVN
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
 3-37
378-419


PIBMP_CAMVP
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
 3-37
374-419


PIBMP_CAMVS
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS
 3-37
378-419




(STRAIN STRASBOURG)


PIBMP_CERV
INCLUSION BODY MATRIX PROTEIN
CARNATION ETCHED RING VIRUS
 3-37


PIBMP_FMVD
INCLUSION BODY MATRIX PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
 1-51
372-406


PIBMP_SOCMV
INCLUSION BODY MATRIX PROTEIN

 1-48
132-179


PIC18_HCMVA
PROBABLE PROCESSING AND TRANSPORT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
53-98
290-324
498-532



PROTEIN


PIC18_HSV11
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
331-365


PIC18_HSV1A
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/
331-365




STRAIN ANGELOTTI)


PIC18_HSV1F
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
324-362


PIC18_HSVB2
PROBABLE PROCESSING AND TRANSPORT
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
466-500



PROTEIN


PIC18_HSVEB
PROBABLE PROCESSING AND TRANSPORT
HERPESVIRUS TYPE 1 (ISOLATE HVS25A)
341-375



PROTEIN


PIC18_HSVSA
PROBABLE PROCESSING AND TRANSPORT
HERPESVIRUS SAIMIRI (STRAIN 11)
58-99
361-395



PROTEIN


PIC18_MCMVS
PROBABLE PROCESSING AND TRANSPORT
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
 60-112
290-340
647-691



PROTEIN


PIC18_PRVIF
PROBABLE PROCESSING AND TRANSPORT
PSEUDORABIES VIRUS
299-333
303-337



PROTEIN
(STRAIN INDIANA-FUNKHAUSER/BECKE


PICP0_HSVBJ
TRANS-ACTING TRANSCRIPTIONAL
BOVINE HERPESVIRUS TYPE 1 (STRAIN JURA)
190-224



PROTEIN ICP0


PICP0_HSVBK
TRANS-ACTING TRANSCRIPTIONAL
BOVINE HERPESVIRUS TYPE 1 (STRAIN K22)
190-224



PROTEIN ICP0


PICP4_HSVMG
TRANS-ACTING TRANSCRIPTIONAL
MAREK'S DISEASE HERPESVIRUS (STRAIN GA)
1022-



ACTIVATOR PR

1056


PICP4_VZVD
TRANS-ACTING TRANSCRIPTIONAL
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
920-954



PROTEIN ICP4


PIE63_HCMVA
TRANSCRIPTIONAL REGULATOR IE63
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
207-241



HOMOLOG


PIE63_HSV11
TRANSCRIPTIONAL REGULATOR IE63
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
241-275


PIE63_HSVEB
TRANSCRIPTIONAL REGULATOR IE63
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
282-316



HOMOLOG


PIE63_VZVD
TRANSCRIPTIONAL REGULATOR IE63
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
195-229
258-306



HOMOLOG


PIE68_HSVE4
IMMEDIATE-EARLY PROTEIN IE68
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
 87-121


PIE68_HSVEB
IMMEDIATE-EARLY PROTEIN IE68
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
 99-133


PIE68_HSVSA
IMMEDIATE-EARLY PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
48-85


PIR05_HCMVA
HYPOTHETICAL PROTEIN IRL5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)—
13-47


PIR12_HCMVA
HYPOTHETICAL PROTEIN IRL12
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 74-162


PKABL_FSVHY
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
280-314



TRANSFORMING PROT
(STRAIN HARDY-ZUCKERMAN 2)


PKABL_MLVAB
TYROSINE-PROTEIN KINASE
ABELSON MURINE LEUKEMIA VIRUS
217-251



TRANSFORMING PROT


PKAKT_MLVAT
AKT KINASE TRANSFORMING PROTEIN
AKT8 MURINE LEUKEMIA VIRUS
172-227
263-304


PKFES_FSVGA
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
23-64
104-178



TRANSFORMING PROT
(STRAIN GARDNER-ARNSTEIN)


PKFGR_FSVGR
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
218-252



TRANSFORMING PROT
(STRAIN GARDNER-RASHEED)


PKFMS_FSVMD
FMS TYROSINE KINASE TRANSFORMING
FELINE SARCOMA VIRUS
313-362
638-679
812-849



PROTEIN
(STRAIN MCDONOUGH)


PKFPS_AVISP
TYROSINE-PROTEIN KINASE
AVIAN SARCOMA VIRUS (STRAIN PRCII)
65-99



TRANSFORMING PROT


PKFPS_FUJSV
TYROSINE-PROTEIN KINASE
FUJINAMI SARCOMA VIRUS
65-99
152-251
348-398



TRANSFORMING PROT


PKITH_AMEPV
THYMIDINE KINASE
AMSACTA MOOREI ENTOMOPOXVIRUS
47-81


PKITH_CAPVK
THYMIDINE KINASE
CAPRIPOXVIRUS (STRAIN KS-1
38-82


PKITH_EBV
THYMIDINE KINASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
228-262
431-472


PKITH_HSV11
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 90-124


PKITH_HSV1C
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN CL101)
 90-124


PKITH_HSV1E
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM)
 90-124


PKITH_HSV1K
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
 90-124


PKITH_HSV1S
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16)
 90-124


PKITH_HSV23
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
 91-125


PKITH_HSVBM
THYMIDINE KINASE
BOVINE HERPES VIRUS TYPE 3 (STRAIN WC11)
616-665


PKITH_HSVE4
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
19-53
178-219


PKITH_HSVEB
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
19-53
178-230


PKITH_HSVF
THYMIDINE KINASE
FELINE HERPESVIRUS (FELID HERPESVIRUS 1)
180-214


PKITH_HSVMR
THYMIDINE KINASE
MARMOSET HERPESVIRUS
52-86


PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
337-389


PKITH_PRVN3
THYMIDINE KINASE
PSEUDORABIES VIRUS (STRAIN NIA-3)
161-202


PKMIL_AVIMH
MIL SERINE/THREONINE-PROTEIN KINASE
AVIAN RETROVIRUS MH2
 69-103



TRANSF


PKR15_HSVI1
GENE 15 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
190-224


PKR2_HSVI1
PROBABLE SERINE/THREONINE-PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
57-91
281-315



KINASE


PKR74_HSVI1
GENE 74 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
487-528
597-631


PKRAF_MSV36
RAF SERINE/THREONINE-PROTEIN
MURINE SARCOMA VIRUS 3611
11-45



KINASE TRANSF


PKRB1_VACCC
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
127-168


PKRB1_VACCV
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN WR)
127-168


PKRB1_VARV
30 KD PROTEIN KINASE HOMOLOG
VARIOLA VIRUS
123-171


PKRB2_VACCC
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN COPENHAGEN)
147-181


PKRB2_VACCV
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN WR)
147-181


PKRF1_VACCC
POSSIBLE PROTEIN KINASE F10
VACCINIA VIRUS (STRAIN COPENHAGEN)
169-203


PKRF1_VACCP
POSSIBLE PROTEIN KINASE F10
VACCINIA VIRUS (STRAIN L-1VP)
136-170


PKRF1_VARV
POSSIBLE PROTEIN KINASE F10
VARIOLA VIRUS
169-203


PKROS_AVISU
ROS TYROSINE KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN UR2)
111-145



PROTEIN


PKRYK_AVIR3
TYROSINE-PROTEIN KINASE
AVIAN RETROVIRUS RPL30
15-66



TRANSFORMING PROT


PKTHY_VACCV
THYMIDYLATE KINASE
VACCINIA VIRUS (STRAIN WR),
135-169




(STRAIN COPENHAGEN)


PKYES_AVISY
TYROSINE-PROTEIN KINASE
AVIAN SARCOMA VIRUS (STRAIN Y73)
174-233



TRANSFORMING PROT


PL100_ADE02
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
441-475


PL100_ADE05
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
223-264


PL100_ADE40
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 40
191-232
408-442


PL100_ADE41
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
199-233


PL52_ADE02
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
238-284
301-349


PL52_ADE05
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
238-284
301-349


PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
144-179
294-338


PMCEL_SFVKA
MRNA CAPPING ENZYME
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 54-152
622-656


PMCEL_VACCC
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN COPENHAGEN)
 1-41
623-657


PMCEL_VACCV
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN WR)
 1-41
623-657


PMCEL_VARV
MRNA CAPPING ENZYME
VARIOLA VIRUS
 1-39
623-657


PMCES_VACCC
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN COPENHAGEN)
 72-137
245-286


PMCES_VACCV
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN WR)
 72-137
245-286


PMCES_VARV
MRNA CAPPING ENZYME
VARIOLA VIRUS
 72-137
245-286


PMCE_ASFB7
MRNA CAPPING ENZYME
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
116-157
279-313
738-772


PMOVP_ORSV
MOVEMENT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
53-90


PMOVP_PPMVS
MOVEMENT PROTEIN
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN)
26-66


PMOVP_TMGMV
MOVEMENT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS
29-66




(TMV STRAIN U2)


PMOVP_TMVTO
MOVEMENT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
32-66


PMOVP_TOMVA
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LIIA)
32-80


PMOVP_TOMVL
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LII)
32-80


PMTC1_CHVN1
MODIFICATION METHYLASE CVIBI
CHLORELLA VIRUS NC-1A
222-256


PMTC2_CHVP1
MODIFICATION METHYLASE CVIAII
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
116-164


PMYC_AVIM2
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS CMII
229-266
375-419


PMYC_AVIMC
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
230-267
376-420


PMYC_AVIMD
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HBI
230-267
376-420


PMYC_AVIME
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS MH2E21
377-421


PMYC_AVIOK
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS OK10
224-261
370-414


PMYC_FLV
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA VIRUS
393-437


PMYC_FLVTT
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA PROVIRUS FTT
393-437


PNCA2_CVMA5
NUCLEOCAPSID PROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
12-46


PNCAP_AINOV
NUCLEOCAPSID PROTEIN
AINO VIRUS
177-211


PNCAP_BEV
NUCLEOCAPSID PROTEIN
BERNE VIRUS
46-83
122-156


PNCAP_BRSVA
NUCLEOCAPSID PROTEIN
BOVINE RESPIRATOR SYNCYTIAL VIRUS
 62-108
163-200
248-303
343-383




(STRAIN A51908)


PNCAP_BUNGE
NUCLEOCAPSID PROTEIN
BUNYAVIRUS GERMISTON
176-228


PNCAP_BUNLC
NUCLEOCAPSID PROTEIN
BUNYAVIRUS LA CROSSE
176-229


PNCAP_BUNSH
NUCLEOCAPSID PROTEIN
BUNYAVIRUS SNOWSHOE HARE
176-229


PNCAP_BUNYW
NUCLEOCAPSID PROTEIN
BUNYAMWERA VIRUS
175-228


PNCAP_CCHFV
NUCLEOCAPSID PROTEIN
CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS
223-306
427-461




(ISOLATE C6803


PNCAP_CDVO
NUCLEOCAPSID PROTEIN
CANINE DISTEMPER VIRUS
137-174
179-217
354-402




(STRAIN ONDERSTEPOORT)


PNCAP_CHAV
NUCLEOCAPSID PROTEIN
CHANDIPURA VIRUS (STRAIN I653514)
40-84
321-369


PNCAP_CVBF
NUCLEOCAPSID PROTEIN
BOVINE CORONAVIRUS (STRAIN F15)
349-383


PNCAP_CVBM
NUCLEOCAPSID PROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
349-383


PNCAP_CVCAE
NUCLEOCAPSID PROTEIN
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
165-227


PNCAP_CVHOC
NUCLEOCAPSID PROTEIN
HUMAN CORONAVIRUS (STRAIN OC43)
349-383


PNCAP_CVMJH
NUCLEOCAPSID PROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
12-46


PNCAP_CVPFS
NUCLEOCAPSID PROTEIN
PORCINE TRANSMISSIBLE GASTROENTERITIS
149-206




CORONAVIRUS (S


PNCAP_CVPPU
NUCLEOCAPSID PROTEIN
PORCINE TRANSMISSIBLE GASTROENTERITIS
165-227




CORONAVIRUS (S


PNCAP_CVPRS
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS
149-228




(STRAIN 86/137004/BRIT


PNCAP_CVPRM
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS
149-228




(STRAIN RM4)


PNCAP_CVRSD
NUCLEOCAPSID PROTEIN
RAT CORONAVIRUS (STRAIN 681)
12-46


PNCAP_CVTKE
NUCLEOCAPSID PROTEIN
TURKEY ENTERIC CORONAVIRUS
349-383


PNCAP_DUGBV
NUCLEOCAPSID PROTEIN
DUGBE VIRUS
230-306


PNCAP_FIPV
NUCLEOCAPSID PROTEIN
FELINE INFECTIOUS PERITONITIS VIRUS
151-206




(STRAIN 79-1146)


PNCAP_HANTV
NUCLEOCAPSID PROTEIN
HANTAAN VIRUS (STRAIN 76-118)
 1-35
40-74
333-381


PNCAP_HAZVJ
NUCLEOCAPSID PROTEIN
HAZARA VIRUS (ISOLATE JC280)
233-297


PNCAP_HRSV1
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
 62-145
163-200
248-303
343-380




(SUBGROUP B/STRAI


PNCAP_HRSVA
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
 62-145
163-200
248-303
343-380




(STRAIN A2)


PNCAP_IBVG
NUCLEOCAPSID PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
186-227




(STRAIN GRAY)


PNCAP_IBVK
NUCLEOCAPSID PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
186-220




(STRAIN KB8523)


PNCAP_JUNIN
NUCLEOCAPSID PROTEIN
JUNIN ARENAVIRUS
 96-151


PNCAP_LASSG
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN GA391)
 65-113
126-174


PNCAP_LASSJ
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN JOSIAH)
 65-113
122-174
467-504


PNCAP_LDV
NUCLEOCAPSID PROTEIN
LACTATE DEHYDROGENASE-ELEVATING VIRUS(
 3-40


PNCAP_LYCVA
NUCLEOCAPSID PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
 45-117
460-497




(STRAIN ARMSTRON


PNCAP_LYCVW
NUCLEOCAPSID PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
45-79
 83-117
460-497




(STRAIN WE)


PNCAP_MAGV
NUCLEOCAPSID PROTEIN
MAGUARI VIRUS
175-228


PNCAP_MEASE
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN EDMONSTON)
188-226
363-411


PNCAP_MEASH
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN HALLE)
188-226
363-411


PNCAP_MEASI
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN IP-3-CA)
188-226
363-411


PNCAP_MEASY
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN YAMAGATA-1)
188-226
363-411


PNCAP_MOPEI
NUCLEOCAPSID PROTEIN
MOPEIA VIRUS
 65-106
471-505


PNCAP_MUMP1
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN SBL-1)
214-255
500-534


PNCAP_MUMPM
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
214-255


PNCAP_PHV
NUCLEOCAPSID PROTEIN
PROSPECT HILL VIRUS
 1-35
40-74
337-392


PNCAP_P11HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
212-272
441-510


PNCAP_P11HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
212-272
441-510




(STRAIN WASHINGTON/1957)


PNCAP_P12HT
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
214-266
344-378




(STRAIN TOSHIBA)


PNCAP_P13B
NUCLEOCAPSID PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
200-403
446-490


PNCAP_P13H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
 87-135
208-266
344-403
440-491




(STRAIN NIH 47885)


PNCAP_P14HA
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS
58-94
191-267




(STRAIN TOSHIBA)


PNCAP_P14HB
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 4B VIRUS
58-94
191-267




(STRAIN 68-333)


PNCAP_PIARV
NUCLEOCAPSID PROTEIN
PICHINDE ARENAVIRUS
 65-112


PNCAP_PIRYV
NUCLEOCAPSID PROTEIN
PIRY VIRUS
 71-116
325-359


PNCAP_PUUMH
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN HALLNAS B1)
 1-35
40-75
337-392


PNCAP_PUUMS
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN SOTKAMO)
 1-35
40-75
337-385


PNCAP_PVM
NUCLEOCAPSID PROTEIN
PNEUMONIA VIRUS OF MICE
 93-141
248-303
344-388


PNCAP_RABVA
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN AVO1)
133-167


PNCAP_SEND5
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
212-272
345-404


PNCAP_SENDE
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN ENDERS)
212-272
345-404


PNCAP_SENDZ
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z)
212-272
345-408


PNCAP_SEOUS
NUCLEOCAPSID PROTEIN
SEOUL VIRUS (STRAIN SR-11)
 1-35
40-74
333-381


PNCAP_SV41
NUCLEOCAPSID PROTEIN
SIMIAN VIRUS 41
215-267
372-406
418-466


PNCAP_SYNV
NUCLEOCAPSID PROTEIN
SONCHUS YELLOW NET VIRUS
332-366


PNCAP_TACV
NUCLEOCAPSID PROTEIN
TACARIBE VIRUS
50-84
230-264


PNCAP_TOSV
NUCLEOCAPSID PROTEIN
TOSCANA VIRUS
215-249


PNCAP_TSWVB
NUCLEOCAPSID PROTEIN
TOMATO SPOTTED WILT VIRUS
 79-120




(BRAZILIAN ISOLATE CPNH1/BR


PNCAP_TSWVH
NUCLEOCAPSID PROTEIN
TOMATO SPOTTED WILT VIRUS
 79-120




(HAWAIIAN ISOLATE)


PNCAP_TSWVL
NUCLEOCAPSID PROTEIN
TOMATO SPOTTED WILT VIRUS (STRAIN L3)
 79-120


PNCAP_UUK
NUCLEOCAPSID PROTEIN
UUKUNIEMI VIRUS
 51-102


PNCAP_VHSV0
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
249-325




(STRAIN 07-71)


PNCAP_VHSVM
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
142-180
249-325




(STRAIN MAKAH)


PNCAP_VSVIG
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
 42-108




(SEROTYPE INDIANA/STRAIN G


PNCAP_VSVJO
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
 67-115




(SEROTYPE NEW JERSEY/STRA


PNCAP_VSVSJ
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
 42-115




(STRAIN SAN JUAN)


PNEF_HV2BE
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
 7-48




(ISOLATE BEN)


PNEF_HV2D1
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
 7-41




(ISOLATE D194)


PNEF_HV2RO
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
112-160




(ISOLATE ROD)


PNEF_HV2SB
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
109-150




(ISOLATE SBLISY)


PNEF_HV2ST
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
108-149




(ISOLATE ST)


PNEF_SIVAI
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
 96-140




(ISOLATE AGM/CLONE GR1


PNEF_SIVS4
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
 9-43
233-267




(F236/SMH4 ISOLATE)


PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
47-81




BLACK DUCK/AUSTRALIA/702/78


PNRAM_IACAO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
33-74




CAMEL/MONGOLIA/82)


PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-91




CHILE/1/83)


PNRAM_IACKQ
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
349-383




CHICKEN/PENNSYLVANIA/1370/


PNRAM_IACKR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
349-383




CHICKEN/PENNSYLVANIA/8125/


PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
14-48




DUCK/GERMANY/49)


PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
14-48
194-229




FOWL PLAGUE VIRUS/WEYBRID


PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
10-47
193-227




EQUINE/COR/16/74


PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
 5-44
361-402




EQUINE/KENTUCKY/1/81)


PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-91




KIEV/59/79)


PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-91




LENINGRAD/54/1)


PNRAM_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-88




MEMPHIS/1/71H-A/BELLAMY/42N


PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-91




RUDDY TURNSTONE/NEW JERSE


PNRAM_IASH2
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
10-44




SHEARWATER/AUSTRALIA/72)


PNRAM_IATKR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
 7-41




TURKEY/OREGON/71)



PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-83




TERN/AUSTRALIA/G70C/75)


PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-91




USSR/90/77)


PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-91




WHALE/MAINE/1/84)


PNRAM_INBBE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-46
348-382




BEIJING/1/87)


PNRAM_INBHK
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-46
349-383




HONG KONG/8/73)


PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-46
349-383




LEE/40)


PNRAM_INBLN
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-39
348-382




LENINGRAD/179/86),(STRAIN B/M


PNRAM_INBMD
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-39
349-383




MARYLAND/59)


PNRAM_INBMF
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-46
348-382




MEMPHIS/3/89)


PNRAM_INBOR
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-46
349-383




OREGON/5/80)


PNRAM_INBSI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-39
349-383




SINGAPORE/222/79)


PNRAM_INBUS
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-39
349-383




USSR/100/83)


PNRAM_INBVI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
 5-39
348-382




VICTORIA/3/85


PNS2_SIDEV
PROBABLE STRUCTURAL PROTEIN
BOMBYX DENSONUCLEOSIS VIRUS
790-828



PRECURSOR


PNSS_INSVN
NON-STRUCTURAL PROTEIN
IMPATIENS NECROTIC SPOT VIRUS
 95-129
204-238




(STRAIN NL-07)


PNSS_TSWVB
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
 3-37




(BRAZILIAN ISOLATE CPNH1/BR


PNSS_TSWVL
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
 3-37




(STRAIN L3)


PNTP1_AMEPV
NUCLEOSIDE TRIPHOSPHATASE I
AMSACTA MOOREI ENTOMOPOXVIRUS
28-69
110-144


PNTP1_CBEPV
NUCLEOSIDE TRIPHOSPHATASE I
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
122-169
415-449
514-555


PNTP1_VACCC
NUCLEOSIDE TRIPHOSPHATASE I
VACCINIA VIRUS (STRAIN COPENHAGEN)
56-90
248-289
549-599


PNTP1_VACCV
NUCLEOSIDE TRIPHOSPHATASE I
VACCINIA VIRUS (STRAIN WR)
56-90
248-289
549-599


PNTP1_VARV
NUCLEOSIDE TRIPHOSPHATASE I
VARIOLA VIRUS
154-195
455-505


PP100_HSV6U
MAJOR ANTIGENIC STRUCTURAL PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/
189-223
689-735




STRAIN UGANDA-1102)


PPAP1_VACCC
POLY(A) POLYMERASE CATALYTIC
VACCINIA VIRUS (STRAIN COPENHAGEN)
121-180



SUBUNIT


PPAP1_VACCV
POLY(A) POLYMERASE CATALYTIC
VACCINIA VIRUS (STRAIN WR)
121-180



SUBUNIT


PPAP1_VARV
POLY(A) POLYMERASE CATALYTIC
VARIOLA VIRUS
121-180



SUBUNIT


PPAP2_CAPVK
POLY(A) POLYMERASE REGULATORY
CAPRIPOXVIRUS (STRAIN KS-1)
112-146



SUBUNIT


PPAP2_FOWPV
POLY(A) POLYMERASE REGULATORY
FOWLPOX VIRUS
 95-154



SUBUNIT


PPAP2_VACCC
POLY(A) POLYMERASE REGULATORY
VACCINIA VIRUS (STRAIN COPENHAGEN)
203-249



SUBUNIT


PPAP2_VACCV
POLY(A) POLYMERASE REGULATORY
VACCINIA VIRUS (STRAIN WR)
203-249



SUBUNIT


PPAP2_VARV
POLY(A) POLYMERASE REGULATORY
VARIOLA VIRUS
203-249



SUBUNIT


PPE12_NPVAC
12.1 KD PROTEIN IN PE 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR
15-56
 60-105




POLYHEDROSIS VIRUS


PPE12_NPVOP
11.5 KD PROTEIN IN P26 5′REGION
ORGYIA PSEUDOTSUGATA MULTICAPSID
11-98




POLYHEDROSIS VIRUS


PPE38_NPVAC
MAJOR IMMEDIATE EARLY PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
19-77
197-249




POLYHEDROSIS VIRUS


PPE38_NPVOP
MAJOR IMMEDIATE EARLY PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
190-240




POLYHEDROSIS VIRUS


PPE48_NPVAC
48.3 KD PROTEIN IN PE-P26
AUTOGRAPHA CALIFORNICA NUCLEAR
 4-42
48-89
 97-131



INTERGENIC REGION
POLYHEDROSIS VIRUS


PPE48_NPVOC
47.3 KD PROTEIN IN PE-P26
ORGYIA PSEUDOTSUGATA MULTICAPSID
47-82
165-199



INTERGENIC REGION
POLYHEDROSIS VIRUS


PPIV2_ADE07
MATURATION PROTEIN
HUMAN ADENOVIRUS TYPE 7
414-448


PPIV6_ADE02
PROTEIN VI PRECURSOR
HUMAN ADENOVIRUS TYPE 2
37-71


PPIV6_ADE05
PROTEIN VI PRECURSOR
HUMAN ADENOVIRUS TYPE 5
37-71


PPOL1_BAYMG
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
329-363
743-777
957-991
1265-
2229-
2309-
2368-




(GERMAN ISOLATE)



1299
2266
2352
2404


PPOL1_BAYMJ
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
329-363
671-705
743-777
957-994
1265-
2227-
2307-
2366-




(JAPANESE STRAIN 11-1)




1299
2264
2350
2402


PPOL1_GCMV
RNA1 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME MOSAIC
120-161
165-216
230-273
377-415




VIRUS


PPOL1_GFLV
RNA1 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
170-212
480-519
636-677
691-725
1157-
1378-
1906-









1196
1412
1943


PPOL1_TBRVS
RNA1 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
223-270
929-977


PPOL1_TRSVR
RNA1 POLYPROTEIN
TOMATO RINGSPOT VIRUS
161-206




(ISOLATE RASPBERRY)


PPOL2_BAYMG
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
240-281
669-732
739-773
787-828




(GERMAN ISOLATE)


PPOL2_BAYMJ
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
669-732
739-773
787-828




(JAPANESE STRAIN II-1)


PPOL2_GFLV
RNA2 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
365-406
542-602


PPOL2_TBRVS
RNA2 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
 4-38


PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS
158-206
334-368




(ISOLATE RASPBERRY)


PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27)
849-886
1008-
1382-
1459-
1576-






1064
1416
1507
1617


PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
244-289
446-491
629-663
1033-
1303-
1392-
1869-
2226-




(ISOLATE NADL)



1074
1344
1443
1910
2260


PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
245-289
446-491
629-663
1033-
1303-
1392-
1779-
2136-




(STRAIN SD-1)



1074
1344
1443
1820
2170


PPOLG_BYMV
GENOME POLYPROTEIN
BEAN YELLOW MOSAIC VIRUS
 96-130


PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21 (STRAIN COE)
 9-43
562-596
664-698
1045-
1498-
1607-
1805-
1901-








1100
1546
1648
1839
1946


PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9 (STRAIN GRIGGS)
15-49
1040-
1895-






1086
1940


PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
15-49
1021-
1876-






1067
1921


PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIEVIRUS B3
15-49
1024-
1879-






1070
1924


PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
15-49
642-681
1022-
1877-







1068
1922


PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
15-49
1024-
1879-






1070
1924


PPOLG_CYVV
GENOME POLYPROTEIN
CLOVER YELLOW VEIN VIRUS
120-154


PPOLG_DEN18
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN 836-1)
 74-108


PPOLG_DEN1A
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN AHF 82-80)
 74-108


PPOLG_DEN1C
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN CV1636/77)
 74-108


PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1
 74-108
832-873
960-994
1142-
1386-
1614-
2518-
2946-




(STRAIN SINGAPORE S275/90)



1179
1420
1648
2554
3016


PPOLG_DEN1W
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1
 74-108
833-874
961-995
1143-




(STRAIN WESTERN PACIFIC)



1180


PPOLG_DEN21
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M1)
448-492


PPOLG_DEN22
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M2)
448-495


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
 74-108
728-777
961-995
1146-
1246-
1418-
1615-
2517-








1180
1280
1452
1649
2551


PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53)
 74-108
728-777
961-995
1146-
1246-
1418-
1615-
2485-








1180
1280
1452
1649
2551


PPOLG_DEN2D
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN D2-04)
728-777


PPOLG_DEN2H
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TH-36)
497-546


PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMAICA)
 74-108
728-777
961-995
1146-
1246-
1418-
1615-
2517-








1180
1280
1452
1649
2551


PPOLG_DEN2N
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN NEW GUINEA C)
213-247
398-432


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR159/S1)
 74-108
728-777
832-875
961-995
1146-
1246-
1418-
1615-









1180
1280
1452
1649


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974)
448-497
552-595
681-715
866-900
 966-
1205-









1000
1239


PPOLG_DEN2U
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PUO-218)
614-663


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
830-872
959-993
1385-
2224-
2480-
2704-
2940-
2980-







1419
2258
2521
2738
2978
3014


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
957-993
1380-
2514-
2701-
2941-
2977-






1414
2555
2735
2975
3011


PPOLG_EC11G
GENOME POLYPROTEIN
ECHOVIRUS 11 (STRAIN GREGORY)
213-259
1079-






1113


PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
1074-
1472-
1522-
1665-
1789-





1115
1518
1570
1706
1823


PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
145-179
1076-
1474-
1524-
1667-




(STRAIN EMC-B NONDIABETO

1117
1520
1572
1708


PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
145-179
1076-
1474-
1524-
1667-




(STRAIN EMC-D-DIABETOGEN

1117
1520
1572
1708


PPOLG_ENMG3
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
145-179




(STRAIN 37A)


PPOLG_ENMGO
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
 78-112


PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
221-255
294-328
578-612
1103-
1493-
2165-




(STRAIN A10-61)



1153
1528
2200


PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
220-254
293-327
577-611
1103-
1493-
2164-




(STRAIN A12)



1164
1528
2199


PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
221-255
1103-
1493-
2164-




(STRAINS O1K AND O1BFS)

1153
1528
2199


PPOLG_FMDVS
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
 87-128
693-728




(STRAIN C1-SANTA PAU [C-S


PPOLG_FMDVT
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
221-255
283-317
577-611




(STRAIN C1)


PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
364-398


PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT)
440-493
626-660
695-729
1033-
1190-
1307-
1779-
2136-








1070
1235
1343
1820
2170





2466-
2525-
2667-
3057-
3152-
3406-





2500
2559
2708
3098
3193
3440


PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN BRESCIA)
440-493
626-660
695-729
1033-
1173-
1779-
2136-
2388-








1070
1235
1820
2170
2436


PPOLG_HCVBK


2466-
2525-
2667-
3057-
3152-
3406-
3521-





2500
2559
2708
3098
3195
3440
3562


PPOLG_HCVE0
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK)
357-398
2328-






2365


PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE EC10)
65-99


PPOLG_HCVH4
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H)
364-398


PPOLG_HCVH7
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-476)
364-398


PPOLG_HCVH8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCT27)
236-270


PPOLG_HCVHK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCT18)
248-282


PPOLG_HCVJ2
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-KF)
357-398


PPOLG_HCVJ5
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J2)
357-398


PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J5)
364-398


PPOLG_HCVJ7
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6)
364-401
1716-
2082-






1750
2116


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J7)
364-398


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8)
364-398
1716-
2082-
2468-
2538-






1750
2116
2502
2572


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
357-405
2331-






2365


PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-JT)
357-391
2331-






2365


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE TAIWAN)
357-398
2328-
2444-






2365
2503


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
 2-43
101-135
203-237
870-904
1021-
1117-









1055
1151


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
 2-43
101-135
203-237
870-904
1021-
1117-









1055
1151


PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
 2-43
101-135
203-237
870-904
1021-
1117-









1055
1151


PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN CR326)
 2-43
101-135
203-237


PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN GA76)
 80-114
182-216


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
 2-43
101-135
203-237
870-904
1021-
1103-









1055
1151


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
 2-43
101-135
203-237
870-904
1021-
1103-









1055
1151


PPOLG_HPAVS
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
 2-43
101-135
203-237
870-904
1021-
1103-









1055
1158


PPOLG_HPAVT
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
 6-47
105-139
207-241
849-908
1025-
1115-
1158-




(STRAIN AGM-27)




1059
1155
1198


PPOLG_HRV14
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
 2-43
101-135
203-237




(STRAIN CY-145)


PPOLG_HRV1A
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14 (HRV-14)
1020-
1393-
1479-
1877-





1054
1427
1513
1920


PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1A (HRV-1A)
362-396


PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B (HRV-1B)
387-421
863-904
1133-







1168


PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2 (HRV-2)
856-897
1126-
1552-






1169
1593


PPOLG_HUEV7
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89 (HRV-89)
1566-





1607


PPOLG_IBDVO
GENOME POLYPROTEIN
HUMAN ENTEROVIRUS 70
359-397
876-917
1032-
1403-
1896-




(STRAIN J670/71)


1088
1441
1934


PPOLG_JAEV1
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
250-291
475-524




(STRAIN OH)


PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
 74-122
211-256
539-576
 980-
1409-
2463-
2739-
2782-




(STRAIN SA-14)



1014
1450
2497
2777
2823





3322-
3387-





3359
3428


PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
 74-122
211-256
539-576
 980-
1409-
2463-
2739-
2782-




(STRAIN SA(V))



1014
1450
2497
2777
2823





3322-
3387-





3359
3428


PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
 74-128
211-256
539-576
 980-
1409-
2463-
2739-
2782-




(STRAIN JAOARS982)



1014
1450
2497
2777
2823





3322-
3387-





3359
3428


PPOLG_KUNJM
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
 7-48
138-183
467-504
908-942
1337-




(STRAIN NAKAYAMA)




1378


PPOLG_LANVT
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
 74-108
207-251
851-885
2464-
2528-
2740-
3325-
3389-








2498
2579
2778
3359
3423


PPOLG_LANVY
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
 68-102
431-465
962-996
1431-
1932-
2536-
2967-
3003-








1472
1966
2591
3001
3037





3102-





3145


PPOLG_LIV
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN YELANTSEV)
 68-102
431-465


PPOLG_LIVSB
GENOME POLYPROTEIN
LOUPING ILL VIRUS (LI)
 68-123
231-272
431-465


PPOLG_MCFA
GENOME POLYPROTEIN
LOUPING ILL VIRUS (STRAIN SB 526)
151-185


PPOLG_MVEV
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT
 80-114
908-942
2049-
2630-
3036-
3290-




(CFA FLAVIVIRUS)


2087
2689
3095
3341


PPOLG_OMV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
 67-115
209-253
853-887
 979-
1408-








1013
1449


PPOLG_PEMVC
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
418-515
946-984
1072-







1106


PPOLG_POL1M
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE)
 55-100
207-248
377-411
704-738
827-862
877-947
1021-
1167-











1055
1201





1488-
1787-
1948-
2202-
2258-
2805-
3003-





1529
1821
1982
2236
2310
2839
3037


PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
 9-43
1046-
1414-
1500-
1806-
1902-






1101
1448
1548
1840
1947


PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
 9-43
899-933
1047-
1415-
1501-
1610-
1808-
1904-







1102
1449
1549
1651
1842
1949


PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
 9-43
897-831
1045-
1413-
1502-
1608-
1806-
1902-







1100
1447
1547
1649
1840
1947


PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
 9-43
897-831
1045-
1413-
1502-
1608-
1806-
1902-







1100
1447
1547
1649
1840
1947


PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAIN 23127)
 9-43
896-930
1044-
1412-
1498-
1607-
1805-
1901-







1098
1446
1546
1648
1839
1946


PPOLG_PPVD
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAINS P3/LEON/
 9-43
896-930
1044-
1412-
1498-
1607-
1805-
1901-




37 AND P3/LEON 12A[1]B)


1099
1446
1546
1648
1839
1946


PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D)
164-208
441-503
728-769
815-867
921-955
1741-










1782


PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN EL AMAR)
116-157
784-818
1146-







1197


PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT)
164-208
403-437
440-502
727-768
814-873
920-954
1740-











1781


PPOLG_PRSVH
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC)
164-208
403-437
440-502
727-768
814-866
920-954
1740-











1781


PPOLG_PRSVP
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
 68-102
434-468




(STRAIN P/MUTANT HA)


PPOLG_PRSVW
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
325-359




(STRAIN P/MUTANT HA 5-1)


PPOLG_PSBMV
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
325-359




(STRAIN W)


PPOLG_PVYC
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC (STRAIN DPD1)
253-315
355-389
529-589
935-976
 984-
1080-
1588-
1808-









1018
1177
1627
1860





1971-
2379-
2712-
2870-





2015
2413
2746
2907


PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN C)
131-196
701-735
802-856


PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN)
144-181
701-735
802-863
901-949
1401-
1492-
1728-
1777-









1441
1526
1772
1818





2272-





2306


PPOLG_PVYO
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N)
140-196
211-245
701-735
802-863
1401-
1492-
1728-
1777-









1441
1526
1772
1818





1929-





1970


PPOLG_PWVSE
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN O)
140-196
211-245
701-735
802-856


PPOLG_PWVTB
GENOME POLYPROTEIN
PASSIONFRUIT WOODINESS VIRUS
203-237




(STRAIN SEVERE)


PPOLG_PYFV1
GENOME POLYPROTEIN
PASSIONFRUIT WOODINESS VIRUS
203-237




(STRAIN TIP BRIGHT)


PPOLG_STEVM
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121)
194-228
1111-
1379-
1858-
1950-
2703-






1172
1413
1899
1991
2737


PPOLG_SVDVH
GENOME POLYPROTEIN
ST. LOUIS ENCEPHALITIS VIRUS (STRAIN MS1-7)
106-143
673-707
739-773
 975-
1404-








1009
1438


PPOLG_SVDVU
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
15-49
1024-
1779-
1890-




(STRAIN H/3 ′76)

1070
1813
1924


PPOLG_TBEVS
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
15-49
1024-
1890-




(STRAIN UKG/27/72)

1070
1924


PPOLG_TBEVW
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
 68-140
231-272
431-465
1158-
1431-
1929-
2182-
2535-




(STRAIN SOFJIN)



1192
1472
1966
2216
2590





2965-
3051-
3100-





2999
3092
3143


PPOLG_TEV
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
 68-140
231-272
431-465
1158-
1431-
1932-
2536-
2967-




(WESTERN SUBTYPE)



1192
1492
1966
2591
3001





3003-
3053-
3102-





3037
3094
3145


PPOLG_TMEVB
THEILER'S MURINE ENCEPHALOMYELITIS
TOBACCO ETCH VIRUS
 73-124
166-222
540-584
720-782
828-925
1148-
1416-
1494-



VIRUS (S






1192
1460
1535





1668-
1747-
1792-
2395-
2787-





1702
1781
1826
2434
2821


PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1306-
1483-
1601-




VIRUS (STRAIN BEAN
1340
1518
1635


PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1304-
1481-
1599-




VIRUS (STRAIN DA)
1338
1516
1663


PPOLG_TUMV
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1306-
1483-
1601-




VIRUS (STRAIN GDVII)
1340
1518
1635


PPOLG_TVMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS
216-259
314-362
494-528
768-839
1443-









1477


PPOLG_WMV2
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS
34-68
408-449
667-704
761-813
851-885
 969-
1031-
1643-










1017
1072
1677





1686-
2316-
2701-
2814-





1725
2374
2749
2848


PPOLG_WNV
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
 68-105
202-236


PPOLG_YEFV1
GENOME POLYPROTEIN
WEST NILE VIRUS
 74-108
207-251
847-881
 973-
1413-
2461-
2525-
2737-








1007
1447
2495
2576
2775





3320-
3385-





3357
3426


PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
418-452
525-563
728-768
1388-
2231-
2477-
2958-
3097-








1444
2276
2565
2996
3143


PPOLG_YEFV8
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
418-452
525-563
728-768
1388-
2231-
2477-
2958-
3097-




(STRAIN PASTEUR 17D-204)



1444
2276
2565
2996
3143


PPOLH_POL1M
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
 75-116
418-452
525-563
728-768




(STRAIN 1899/81)


PPOLN_EEVVT
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
 9-43
1047-
1415-
1501-
1610-
1808-
1904-






1102
1449
1549
1651
1842
1949


PPOLN_FCVC6
NONSTRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
345-382
898-932
1945-




(STRAIN TRINIDAD


1979


PPOLN_FCVF9
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN CFI/68 FIV)
510-544


PPOLN_HEVBU
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN F9)
 4-45
369-410
 986-
1023-







1020
1061


PPOLN_HEVME
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN BURMA)
338-379
1139-






1177


PPOLN_HEVMY
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MEXICO)
338-379


PPOLN_HEVPA
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MYANMAR)
338-379
1139-






1184


PPOLN_MIDDV
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN PAKISTAN)
337-378
1138-






1176


PPOLN_ONNVG
NONSTRUCTURAL POLYPROTEIN
MIDDELBURG VIRUS
922-977


PPOLN_RHDV
NONSTRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
899-933
1942-
2444-






1986
2502


PPOLN_RRVN
NON-STRUCTURAL POLYPROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
188-234
306-347
409-457
1657-








1716


PPOLN_RRVT
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092)
895-929
1928-
2414-






1962
2467


PPOLN_RUBVT
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
597-631
1083-






1136


PPOLN_SFV
NONSTRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN THERIEN)
1506-
1551-
1730-
1862-





1540
1585
1767
1896


PPOLN_SINDO
NONSTRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
1094-
2358-





1128
2392


PPOLN_SINDV
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS
919-971
1491-
1961-
2444-




(SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)

1525
1996
2478


PPOLR_EMPV
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAIN HRSP)
1491-
1959-
2442-





1525
1994
2476


PPOLS_EEEV
RNA REPLICASE POLYPROTEIN
EGGPLANT MOSAIC VIRUS
899-933
1127-






1161


PPOLS_EEEV3
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
372-406
914-951


PPOLS_EEVV8
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
373-407
915-952




(STRAIN VA33[TEN BRO


PPOLS_EEVVT
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1216-




(STRAIN TC-83)
1250


PPOLS_IBDV5
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1216-




(STRAIN TRINIDAD
1250


PPOLS_IBDVA
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
231-286
470-523




(STRAIN 52/70)


PPOLS_IBDVC
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
231-286
470-523




(STRAIN AUSTRALI


PPOLS_IBDVE
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
231-286
470-523




(STRAIN CU-1)


PPOLS_IBDVP
NONSTRUCTURAL PROTEIN VP4
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
231-286
304-340




(STRAIN E)


PPOLS_IBDVS
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
115-149
212-267
451-504




(STRAIN PBG-98)


PPOLS_IPNVJ
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
134-168
249-283
470-523




(STRAIN STC)


PPOLS_IPNVN
STRUCTURAL POLYPROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS
 69-103
723-785




(SEROTYPE JASPER)


PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS
716-786




(STRAIN N1)


PPOLS_RRV2
STRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
1204-





1238


PPOLS_RRVN
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN 213970)
35-69


PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092)
369-403
939-973


PPOLS_RUBVH
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
939-973


PPOLS_RUBVR
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE STRAIN HPV77)
 999-





1036


PPOLS_RUBVT
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE STRAIN RA27/3)
 999-





1036


PPOLS_SINDO
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN THERIEN)
 999-





1036


PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS
362-396




(SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)


PPOLS_SINDW
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
362-396


PPOLS_WEEV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS
34-68




(WILD TYPE SB DERIVED FROM STRAIN AR339)


PPOL_BAEVM
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
913-947


PPOL_BLVAU
POL POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
42-80
676-743
794-832
1001-








1042


PPOL_BLVJ
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS
625-673




(AUSTRALIAN ISOLATE)


PPOL_CAEVC
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS
625-673




(JAPANESE ISOLATE BLV-1)


PPOL_CAMVD
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
879-934




(STRAIN CORK)


PPOL_COYMV
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
177-211


PPOL_EIAV9
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS
 87-121
333-367
447-498
838-876
896-930
1310-










1351


PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
513-566
1022-




(CLONE 1369)

1056


PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
513-566
1022-




(CLONE CL22)

1056


PPOL_FENV1
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
512-565
1021-




(ISOLATE WYOMING)

1055


PPOL_FIVPE
POL POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECE1
533-600
623-659
858-899


PPOL_FIVSD
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
429-473
606-663




(ISOLATE PETALUMA)


PPOL_FIVT2
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
428-473
606-642




(ISOLATE SAN DIEGO)


PPOL_FMVD
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
428-472
595-662




(ISOLATE TM2)


PPOL_FOAMV
ENZYMATIC POLYPROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
403-437


PPOL_GALV
POL POLYPROTEIN
HUMAN SPUMARETROVIRUS (FOAMY VIRUS)
140-174
217-256
285-326


PPOL_HTL1A
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
528-562
673-740


PPOL_HTL1C
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
670-711




(STRAIN ATK)


PPOL_HV1A2
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
670-711




(CARIBBEAN ISOLATE)


PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
501-537
606-664




(ARV2/SF2 ISOLATE


PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
513-549
639-676




(BH10 ISOLATE)


PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
513-549
618-676




(BH5 ISOLATE)


PPOL_HV1EL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
513-549
618-676




(BRU ISOLATE)


PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
626-663




(ELI ISOLATE)


PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
501-537
606-664




(HXB2 ISOLATE)


PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-541
610-668




(JRCSF ISOLATE)


PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
476-536
601-663




(MAL ISOLATE)


PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
504-540
609-667




(MN ISOLATE)


PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
501-537
627-664




(NEW YORK-5 ISOL


PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
626-663




(NDK ISOLATE)


PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
501-537
606-664




(OYI ISOLATE)


PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
513-549
693-676




(PV22 ISOLATE)


PPOL_HV1U4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
605-663




(RF/HAT ISOLATE)


PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
601-663




(STRAIN UGANDAN


PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-536
626-663




(Z2/CDC-Z34 ISOLA


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
49-83
484-582
653-687
817-851




(ISOLATE BEN)


PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
356-390
464-562
632-666




(ISOLATE CAM2)


PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
502-600
671-705




(ISOLATE D194)


PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
376-410
484-526
529-577
653-687




(ISOLATE D205,7)


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
464-562
633-667




(ISOLATE GHANA-1)


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
44-78
356-390
464-529
633-667




(ISOLATE NIH-Z)


PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
357-391
465-563
634-668




(ISOLATE ROD)


PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
46-80
473-562
633-667




(ISOLATE SBLISY)


PPOL_IPHA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
484-518
522-577
653-687




(ISOLATE ST)


PPOL_JSRV
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
462-503


PPOL_MLVAK
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
190-231


PPOL_MLVAV
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
325-392


PPOL_MLVF5
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
677-744


PPOL_MLVFF
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS
682-749




(ISOLATE 57)


PPOL_MLVFP
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS
682-749




(ISOLATE FB29)


PPOL_MLVMO
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS
682-749




(ISOLATE PVC-211)


PPOL_MLVRD
POL POLYPROTEIN
MOLONEY MURINE LEUKEMIA VIRUS
677-744


PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
677-744


PPOL_MPMV
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
 62-129




(STRAIN KAPLAN)


PPOL_OMVVS
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
470-504
578-613


PPOL_RSVP
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
470-505
855-910


PPOL_RTBV
POL POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
646-684


PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
 7-44
59-96
101-135
176-236
325-362
433-474
1005-
1405-











1039
1439


PPOL_SFV1
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
 7-44
59-96
101-135
176-236
325-362
433-474
1005-
1405-




(ISOLATE PHILIPPINES)






1039
1439


PPOL_SFV3L
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
349-383
427-464
494-535


PPOL_SIVA1
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
124-165
429-467
496-530


PPOL_S1VA2
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
351-385
637-678
737-771
938-979




(AGM155 ISOLATE)


PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
45-86




(AGM266 ISOLATE)


PPOL_SIVAI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
477-516
642-683
742-783




(AGM3 ISOLATE)


PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
175-209
476-515
641-700
942-983
1020-




(ISOLATE AGM/CLONE GR1




1054


PPOL_SIVCZ
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
657-698
757-798




(TYO-1 ISOLATE)


PPOL_SIVGB
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
527-561
626-688




(S1V(CPZ))


PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
 9-57
446-483
629-673
793-827
912-946




(ISOLATE GB1)


PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
485-519
654-688




(MM142-83 ISOLATE)


PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
485-519
654-688




(K6W ISOLATE)


PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
448-482
617-651




(F236/SMH4 ISOLATE)


PPOL_SOCMV
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
451-485
620-654




(PBJ/BC13 ISOLATE)


PPOL_SRV1
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
247-295
372-416


PPOL_VILV
POL POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
470-504
578-613


PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
489-524
874-929


PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/
489-524
874-929




CLONE LV1-1KS1)


PPP15_HCMVA
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/
489-524
874-929




CLONE LV1-1KS2)


PPR73_MMTVB
LARGE STRUCTURAL PHOSPHOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
116-150
187-221



PP150



PPR73_MMTVC
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
152-200


PPR73_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
20-79


PPR7L_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
61-95
142-201


PPR7R_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
145-204
270-311


PPYHD_CPVBM
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
141-200
266-307


PPYHD_NPVAC
POLYHEDRIN PRECURSOR
BOMBYX MORI CYTOPLASMIC POLYHEDROSIS
13-85




VIRUS


PPYHD_NPVAS
POLYHEDRIN
AUTOGRAPHA CALIFORNICA NUCLEAR
13-47




POLYHEDROSIS VIRUS


PPYHD_NPVBM
POLYHEDRIN
AGROTIS SEGETUM NUCLEAR POLYHEDROSIS
14-48




VIRUS


PPYHD_NPVBS
POLYHEDRIN
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
12-54


PPYHD_NPVLD
POLYHEDRIN
BUZURA SUPPRESSARIA NUCLEAR
14-48




POLYHEDROSIS VIRUS


PPYHD_NPVMB
POLYHEDRIN
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
14-48




POLYHEDROSIS V


PPYHD_NPVOP
POLYHEDRIN
MAMESTRA BRASSICAE NUCLEAR
14-48




POLYHEDROSIS VIRUS


PPYHD_NPVOS
POLYHEDRIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
13-47




POLYHEDROSIS VIRUS


PPYHD_NPVPF
POLYHEDRIN
ORGYIA PSEUDOTSUGATA SINGLE CAPSID
14-48




NUCLEAR POLYHED


PPYHD_NPVSE
POLYHEDRIN
PANOLIS FLAMMEA MULTIPLE NUCLEOCAPSID
14-48




POLYHEDROSIS


PPYHD_NPVSF
POLYHEDRIN
SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS
14-48




VIRUS (STRAIN


PPYHD_NPVSL
POLYHEDRIN
SPODOPTERA FRUGIPERDA NUCLEAR
14-48




POLYHEDROSIS VIRUS


PRASK_MSVKI
POLYHEDRIN
SPODOPTERA LITTORALIS NUCLEAR
17-51




POLYHEDROSIS VIRUS


PREV_BIV27
TRANSFORMING PROTEIN 21
KIRSTEN MURINE SARCOMA VIRUS
142-176


PREV_EIAV9
REV PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
 77-115




(ISOLATE 127)


PREV_EIAVC
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
51-89




(CLONE 1369)


PREV_EIAVY
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
51-89




(CLONE CL22)


PREV_HV112
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
 81-119




(ISOLATE WYOMING)


PREV_HV1A2
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69




(CLONE 12)


PREV_HV1B1
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
32-69




(ARV2/SF2 ISOLATE


PREV_HV1B8
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69




(BH10 ISOLATE)


PREV_HV1BN
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
25-59




(BH8 ISOLATE)


PREV_HV1BR
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
22-59




(BRAIN ISOLATE)


PREV_HV1EL
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69




(BRU ISOLATE)


PREV_HV1H2
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
32-66




(ELI ISOLATE)


PREV_HV1J3
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69




(HXB2 ISOLATE)


PREV_HV1JR
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
29-63




(JH3 ISOLATE)


PREV_HV1MA
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
31-66




(JRCSF ISOLATE)


PREV_HV1MN
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
31-66




(MAL ISOLATE)


PREV_HV1OY
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
31-66




(MN ISOLATE)


PREV_HV1PV
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
32-69




(OYI ISOLATE)


PREV_HV1S3
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69




(PV22 ISOLATE) AN


PREV_HV1SC
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
35-69




(SF33 ISOLATE)


PREV_SIVA1
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
32-69




(SC ISOLATE)


PREV_SIVAG
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
26-77




(AGM155 ISOLATE)


PREV_SIVAI
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
26-77




(AGM3 ISOLATE)


PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
29-77




(ISOLATE AGM/CLONE GR1


PREV_SIVCZ
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
28-75




(TYO-1 ISOLATE)


PREV_VILV
REV PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
33-67


PRIR1_ASFM2
REV PROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
21-62


PRIR1_EBV
RIBONUCLEOSIDE-DIPHOSPHATE
AFRICAN SWINE FEVER VIRUS
 7-41
 88-133
635-683



REDUCTASE LAR
(ISOLATE MALAWI LIL 20/1)


PRIR1_HCMVA
RIBONUCLEOSIDE-DIPHOSPHATE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
213-247
689-723



REDUCTASE LAR


PRIR1_HSVEB
RIBONUCLEOSIDE-DIPHOSPHATE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
632-668



REDUCTASE LAR


PRIR1_HSVSA
RIBONUCLEOSIDE-DIPHOSPHATE
EQUINE HERPESVIRUS TYPE 1
 76-110



REDUCTASE LAR
(STRAIN AB4P)


PRIR1_VACCC
RIBONUCLEOSIDE-DIPHOSPHATE
HERPESVIRUS SAIMIRI (STRAIN 11)
324-365



REDUCTASE LAR


PRIR1_VACCV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN COPENHAGEN)
367-402



REDUCTASE LAR


PRIR1_VARV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN WR)
367-402



REDUCTASE LAR


PRIR1_VZVD
RIBONUCLEOSIDE-DIPHOSPHATE
VARIOLA VIRUS
367-402



REDUCTASE LAR


PRIR2_EBV
RIBONUCLEOSIDE-DIPHOSPHATE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
223-257



REDUCTASE LAR


PRIR2_HSVB3
RIBONUCLEOSIDE-DIPHOSPHATE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 89-137



REDUCTASE SMA


PRIR2_HSVEB
RIBONUCLEOSIDE-DIPHOSPHATE
BOVINE HERPESVIRUS TYPE 1 (STRAIN 34)
101-135



REDUCTASE SMA


PRIR2_HSVSA
RIBONUCLEOSIDE-DIPHOSPHATE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
106-140



REDUCTASE SMA


PRIR2_SFVKA
RIBONUCLEOSIDE-DIPHOSPHATE
HERPESVIRUS SAIMIRI (STRAIN 11)
125-159



REDUCTASE SMA


PRIR2_VACCC
RIBONUCLEOSIDE-DIPHOSPHATE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 98-132



REDUCTASE SMA


PRIR2_VACCP
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN COPENHAGEN)
 98-132



REDUCTASE SMA


PRIR2_VACCV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN L-1VP)
 98-132



REDUCTASE SMA


PRIR2_VARV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN WR)
 98-132



REDUCTASE SMA


PRL1_HSV2H
RIBONUCLEOSIDE-DIPHOSPHATE
VARIOLA VIRUS
 98-132



REDUCTASE SMA


PRP94_VACCV
NEUROVIRULENCE FACTOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
171-212


PRP94_VARV
RNA-POLYMERASE-ASSOCIATED
VACCINIA VIRUS (STRAIN WR), AND
116-150
465-540
757-791



TRANSCRIPTION S
(STRAIN COPENHAGEN


PRPO1_VACCC
RNA-POLYMERASE-ASSOCIATED
VARIOLA VIRUS
41-75
116-150
465-540
757-791



TRANSCRIPTION S


PRPO1_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
243-291
622-656
754-791
954-988
1006-



147 KD POLYPE





1057


PRPO1_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
243-291
622-656
754-791
954-988
1024-



147 KD POLYPE





1058


PRPO2_CAPVK
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
243-291
622-656
754-791
954-988
1006-



147 KD POLYPE





1057


PRPO2_COWPX
DNA-DIRECTED RNA POLYMERASE
CAPRIPOXVIRUS (STRAIN KS-1)
19-60
114-155
589-630



132 KD POLYPE


PRPO2_VACCV
DNA-DIRECTED RNA POLYMERASE
COWPOX VIRUS
211-245
359-400
833-874



132 KD POLYPE


PRPO2_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR),
211-245
359-400
833-874



132 KD POLYPE
AND (STRAIN COPENHAGEN)


PRPO4_VACCC
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
211-245
359-400
833-874



132 KD POLYPE


PRPO4_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
 62-116



35 KD POLYPEP


PRPO4_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
 62-116



35 KD POLYPEP


PRPO5_VACCC
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
 62-116



35 KD POLYPEP


PRPO5_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
 1-71



30 KD POLYPEP


PRPO5_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
 1-71



30 KD POLYPEP


PRPO6_VACCV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
 1-71



30 KD POLYPEP


PRPO6_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR),
25-59



22 KD POLYPEP
AND (STRAIN COPENHAGEN)


PRPO7_VACCV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
25-59



22 KD POLYPEP


PRPO7_VARV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR),
43-93



19 KD POLYPEP
AND (STRAIN COPENHAGEN)


PRPOA_LELV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
43-93



19 KD POLYPEP


PRPOL_EAV
RNA-DIRECTED RNA POLYMERASE
LELYSTAD VIRUS
1533-
1721-
1958-
2109-





1567
1758
1992
2157


PRRP1_IAANN
RNA-DIRECTED RNA POLYMERASE
EQUINE ARTERITIS VIRUS
1083-
1477-
1633-





1117
1518
1673


PRRP1_IABEI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/ANN ARBOR/6/60)


PRRP1_IADUN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313
350-391



SUBUNIT P1
(STRAIN A/BEIJING/11/56)


PRRP1_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/DUNEDIN/4/73)


PRRP1_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/GULL/MARYLAND/704/77)


PRRP1_IAHTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313



SUBUNIT P1
(STRAIN A/EQUINE/LONDON/1416/73)


PRRP1_IAKIE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313



SUBUNIT P1
(STRAIN A/EQUINE/TENNESSEE/5/86)


PRRP1_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/KIEV/59/79)


PRRP1_IALE1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/KOREA/426/68)


PRRP1_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/LENINGRAD/134/57)


PRRP1_IALE3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/LENINGRAD/134/17/57)


PRRP1_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/LENINGRAD/134/47/57)


PRRP1_IAME8
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/MALLARD/NEW YORK/6750/78)


PRRP1_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/MEMPHIS/8/88)


PRRP1_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/NT/60/68)


PRRP1_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313



SUBUNIT P1
(STRAIN A/PUERTO RICO/8/34)


PRRP1_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/SINGAPORE/1/57)


PRRP1_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/TURKEY/MINNESOTA/833/80


PRRP1_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/VICTORIA/3/75)


PRRP1_IAWIS
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313



SUBUNIT P1
(STRAIN A/WILSON-SMITH/33)


PRRP1_IAZH3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
168-242
279-313



SUBUNIT P1
(STRAIN A/WISCONSIN/3523/88)


PRRP1_IAZON
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
187-242
279-313



SUBUNIT P1
(STRAIN A/SWINE/HONG KONG/126/82)


PRRP1_IAZTF
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/SWINE/ONTARIO/2/81)


PRRP1_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
171-242
279-313



SUBUNIT P1
(STRAIN A/SWINE/TENNESSEE/26/77)


PRRP1_INBAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
208-249



SUBUNIT P1
(STRAIN B/ANN ARBOR/1/66)


PRRP1_INBLE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
208-249



SUBUNIT P1
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE]


PRRP1_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
208-249



SUBUNIT P1
(STRAIN B/LEE/40)


PRRP2_IAANN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS
305-384
648-686
707-752



SUBUNIT P1
(STRAIN C/JJ/50)


PRRP2_IADH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/ANN ARBOR/6/60)


PRRP2_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/DUCK/HOKKAIDO/8/80)


PRRP2_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK


PRRP2_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/GULL/MARYLAND/704/77)


PRRP2_IAHTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/EQUINE/LONDON/1416/73)


PRRP2_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/EQUINE/TENNESSEE/5/86)


PRRP2_IALE1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/KOREA/426/68)


PRRP2_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/LENINGRAD/134/57)


PRRP2_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/LENINGRAD/134/17/57)


PRRP2_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/MALLARD/NEW YORK/6750/78)


PRRP2_IAPI0
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/NT/60/68)


PRRP2_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/PINTAIL/ALBERTA/119/79)


PRRP2_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/PUERTO RICO/8/34)


PRRP2_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/RUDDY TURNSTONE/NEW JERS


PRRP2_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/SINGAPORE/1/57)


PRRP2_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/TURKEY/MINNESOTA/833/80)


PRRP2_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/VICTORIA/3/75)


PRRP2_IAZH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/WILSON-SMITH/33)


PRRP2_IAZH3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/SWINE/HONG KONG/81/78


PRRP2_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/SWINE/HONG KONG/126/82


PRRP2_IAZTF
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/SWINE/IOWA/15/30


PRRP2_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
110-144
177-218



SUBUNIT P2
(STRAIN A/SWINE/TENNESSEE/26/77)


PRRP2_INBAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
111-196
349-390



SUBUNIT P2
(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE


PRRP2_INBSI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
111-196
349-390



SUBUNIT P2
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])


PRRP3_IAANN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
111-196
349-383



SUBUNIT P2
(STRAIN B/SINGAPORE/222/79)


PRRP3_IABUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/ANN ARBOR/6/60)


PRRP3_IACHI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
518-567
707-755



SUBUNIT P3
(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)


PRRP3_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/CHILE/1/83)


PRRP3_IAFPW
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK


PRRP3_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/FOWL PLAGUE VIRUS/WEYBRID


PRRP3_IAGUA
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/GULL/MARYLAND/704/77


PRRP3_IAHK6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 7-41
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/GULL/ASTRAKHAN/227/84


PRRP3_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/EQUINE/KENTUCKY/2/860)


PRRP3_IAHPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/EQUINE/LONDON/1416/73)


PRRP3_IAKIE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
721-755



SUBUNIT P3
(STRAIN A/EQUINE/PRAGUE/1/56)


PRRP3_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/KIEV/59/79)


PRRP3_IALEI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/KOREA/426/68)


PRRP3_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/LENINGRAD/134/57)


PRRP3_IALE3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/LENINGRAD/134/17/57)


PRRP3_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/LENINGRAD/134/47/57)


PRRP3_IAME8
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/MALLARD/NEW YORK/6750/78)


PRRP3_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 7-41
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/MEMPHIS/8/88)


PRRP3_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/NT/60/68)


PRRP3_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/PUERTO RICO/8/34)


PRRP3_IASE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/RUDDY TURNSTONE/NEW JERSE


PRRP3_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/SEAL/MASSACHUSETTS/133/82)


PRRP3_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/SINGAPORE/1/57)


PRRP3_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/TURKEY/MINNESOTA/833/80)


PRRP3_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/VICTORIA/3/75)


PRRP3_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/WILSON-SMITH/33


PRRP3_IAZTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 1-42
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/SWINE/IOWA/15/30)


PRRP3_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
 7-41
363-402
473-514
707-755



SUBUNIT P3
(STRAIN A/SWINE/TENNESSEE/24/77


PRRP3_INBAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
458-533



SUBUNIT P3
(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE


PRRP3_INCBE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS
458-533



SUBUNIT P3
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])


PRRP3_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS
235-269
275-309



SUBUNIT P3
(STRAIN C/BERLIN/1/85)


PRRP3_THOGV
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS
235-269
275-316



SUBUNIT P3
(STRAIN C/JJ/50)


PRRPA_CVH22
RNA-DIRECTED RNA POLYMERASE
THOGOTO VIRUS
343-401



SUBUNIT P3


PRRPA_CVMJH
RNA-DIRECTED RNA POLYMERASE
HUMAN CORONAVIRUS (STRAIN 229E)
358-392
495-571
1742-
1971-
3664-
3912-







1776
2008
3724
3946


PRRPB_BEV
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
617-651
1364-
2769-
3586-
3821-
4075-
4319-






1398
2803
3620
3855
4121
4353


PRRPB_CVMA5
RNA-DIRECTED RNA POLYMERASE
BERNE VIRUS
20-64
617-651
 943-







1009


PRRPB_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN A59)
1129-
1303-
1453-
1692-
2629-





1170
1337
1494
1726
2670


PRRPB_IBVB
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
1129-
1303-
1453-
1690-
2627-





1170
1337
1494
1724
2668


PRRPB_IBVK
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS
499-550
650-695
1460-
1509-
2246-




(STRAIN BEAUDETTE)


1494
1548
2287


PRRPL_BTV10
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS
115-156




(STRAIN KB8523)


PRRPL_BUNYW
RNA-DIRECTED RNA POLYMERASE
BLUETONGUE VIRUS
308-342
705-748
825-903
1021-
1114-




(SEROTYPE 10/ISOLATE USA)



1076
1201


PRRPL_CDVO
RNA POLYMERASE
BUNYAMWERA VIRUS
 2-36
 80-114
308-363
371-412
1704-
1802-
1889-









1741
1861
1935


PRRPL_HANTV
RNA POLYMERASE BETA SUBUNIT
CANINE DISTEMPER VIRUS
20-54




(STRAIN ONDERSTEPOORT)


PRRPL_HRSVA
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118)
 98-139
174-208
372-431
557-591
655-696
731-783
905-949
1276-












1310





1419-
1742-
1993-





1453
1776
2027


PRRPL_MABVM
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
 87-188
827-861
1131-
1185-
1465-




(STRAIN A2


1179
1220
1517


PRRPL_MABVP
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN MUSOKE)
597-631
1046-
1490-
1804-
2029-
2194-






1092
1552
1838
2063
2266


PRRPL_MEASE
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN POPP)
597-631
1046-
1490-






1092
1552


PRRPL_MUMPM
RNA POLYMERASE BETA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
197-231
790-824
869-903
1064-
1283-
2121-








1109
1317
2155


PRRPL_NDVB
RNA POLYMERASE BETA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
164-214
220-254
267-304
576-627
752-807
1231-
1447-
1487-










1286
1481
1531





1566-
2191-





1600
2225


PRRPL_PI2HT
RNA POLYMERASE BETA SUBUNIT
NEWCASTLE DISEASE VIRUS
167-208
230-295
1969-
2043-
2108-




(STRAIN BEAUDETTE C/45)


2013
2077
2142


PRRPL_PI3H4
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
136-170
575-628
750-785
1226-
1316-
1417-
1564-
1687-




(STRAIN TOSHIBA)



1284
1357
1479
1630
1721





1901-





1955


PRRPL_PUUMH
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS
48-91
107-163
540-574
747-781
1064-
1293-
1499-
1994-




(STRAIN NIH 47885)




1129
1356
1536
2036


PRRPL_RABVP
RNA-DIRECTED RNA POLYMERASE
PUUMALA VIRUS (STRAIN HALLNAS B1)
 98-132
381-415
444-488
557-591
655-696
731-783
922-976
1119-












1153





1742-
1940-
1993-





1776
1975
2032


PRRPL_RABVS
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN PV)
 73-114
197-231
696-730
1174-
1522-
1584-
2068-








1222
1580
1618
2123


PRRPL_RDV
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
 73-114
197-231
696-730
749-783
1174-
1522-
1584-









1222
1580
2123


PRRPL_RVFVZ
RNA-DIRECTED RNA POLYMERASE
RICE DWARF VIRUS
17-61
534-575
844-878
918-985
1037-









1071


PRRPL_SEND5
RNA-DIRECTED RNA POLYMERASE
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12)
398-439
641-678
832-887
1081-
1653-
1819-








1115
1687
1870


PRRPL_SENDE
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
309-343
540-600
612-656
747-781
1064-
1239-
1499-
2000-









1119
1280
1536
2034





2146-





2216


PRRPL_SENDZ
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN ENDERS)
129-163
360-420
432-476
567-601
884-939
1059-
1319-
1820-










1100
1356
1854





1966-





2036


PRRPL_SEOU8
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z)
309-343
540-600
612-656
747-781
1064-
1239-
1499-
2000-









1119
1280
1536
2034





2146-





2216


PRRPL_SV5WR
RNA-DIRECTED RNA POLYMERASE
SEOUL VIRUS (STRAIN 80-39)
 98-139
174-208
557-591
655-696
731-765
1742-
1947-
1993-










1776
1981
2027


PRRPL_SYNV
RNA POLYMERASE BETA SUBUNIT
SIMIAN VIRUS 5 (STRAIN 21004-WR)
547-627
747-781
1225-
1319-
1592-
1676-
2024-







1280
1353
1626
1715
2058


PRRPL_TSWVB
RNA POLYMERASE BETA SUBUNIT
SONCHUS YELLOW NET VIRUS
760-794
825-859
 977-
1089-
1978-
2059-







1014
1137
2032
2107


PRRPL_UUK
RNA-DIRECTED RNA POLYMERASE
TOMATO SPOTTED WILT VIRUS
 46-101
399-433
539-573
589-634
1119-
1195-
1321-
1538-




(BRAZILIAN ISOLATE CPNH1/BR




1153
1236
1379
1572





1684-
1857-
2073-
2156-
2206-
2315-
2378-
2809-





1725
1898
2127
2200
2247
2368
2419
2843


PRRPL_VSVJH
RNA POLYMERASE
UUKUNIEMI VIRUS
127-183
282-323
836-874
1030-
1481-
2015-
2061-








1071
1515
2049
2098


PRRPL_VSVJO
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
319-358
674-715
720-763
1522-
1802-




(SEROTYPE NEW JERSEY/STRA



1567
1836


PRRPL_VSVSJ
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
319-358
674-715
720-763
1802-




(SEROTYPE NEW JERSEY/STRA



1836


PRRPO_ACLSV
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
674-715
720-763
1019-
1742-
2066-




(STRAIN SAN JUAN)


1074
1799
2107


PRRPO_BWYVF
RNA-DIRECTED RNA POLYMERASE
APPLE CHLOROTIC LEAF SPOT VIRUS
228-262
557-596
916-950
1235-








1269


PRRPO_BYDV1
PUTATIVE RNA-DIRECTED RNA
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
304-341



POLYMERASE


PRRPO_BYDVP
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS
234-285



POLYMERASE
(ISOLATE MAV-PS1)


PRRPO_BYDVR
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS
234-285



POLYMERASE
(ISOLATE PAV)


PRRPO_CARMV
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS
234-285



POLYMERASE
(ISOLATE P-PAV)


PRRPO_CGMVS
PROBABLE RNA-DIRECTED RNA
CARNATION MOTTLE VIRUS
 93-131



POLYMERASE


PRRPO_IBDV5
PUTATIVE RNA-DIRECTED RNA
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
 7-41
387-428
446-480
726-767
1445-



POLYMERASE
(WATERMELON STR




1479


PRRPO_IBDVA
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE
384-432
446-484



POLYMERASE
VIRUS (STRAIN 52/70)


PRRPO_IPNVJ
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE
144-185
266-307
709-757
771-809



POLYMERASE
VIRUS (STRAIN AUSTRALI


PRRPO_IPNVS
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS
147-181
268-407
501-535
750-802



POLYMERASE
(SEROTYPE JASPER)


PRRPO_LYCVA
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS
147-181
366-407
501-535
753-802



POLYMERASE
(SEROTYPE SP)


PRRPO_LYCVW
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
301-346
805-886
926-960
1509-
2090-




(STRAIN ARMSTRON



1543
2124


PRRPO_MCMV
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
301-345




(STRAIN WE)


PRRPO_PEAMV
PROBABLE RNA-DIRECTED RNA
MAIZE CHLOROTIC MOTTLE VIRUS
181-215
697-731



POLYMERASE


PRRPO_PLRV1
RNA-DIRECTED RNA POLYMERASE
PEA ENATION MOSAIC VIRUS
321-358


PRRPO_PLRVW
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS (STRAIN 1)
336-373
423-457



POLYMERASE


PRRPO_PPMVS
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS
336-373
423-457



POLYMERASE
(STRAIN WAGENINGEN)


PRRPO_RCNMV
PUTATIVE RNA-DIRECTED RNA
PEPPER MILD MOTTLE VIRUS
321-362
402-454
627-661
862-896



POLYMERASE
(STRAIN SPAIN


PRRPO_REOVD
PUTATIVE RNA-DIRECTED RNA
REC CLOVER NECROTIC MOSAIC VIRUS
666-700



POLYMERASE


PRRPO_REOVJ
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 3/STRAIN DEARING)
310-361


PRRPO_REOVL
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 2/STRAIN D5/JONES)
310-344


PRRPO_ROTBR
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 1/STRAIN LANG)
310-361


PRRPO_ROTBU
RNA-DIRECTED RNA POLYMERASE
BOVINE ROTAVIRUS (STRAIN RF)
60-96
133-167
204-245
535-569
579-631
639-686
690-724
771-805



SUBUNIT VP1


PRRPO_ROTPC
RNA-DIRECTED RNA POLYMERASE
BOVINE ROTAVIRUS (STRAIN UK)
60-96
133-167
204-245
535-569
579-631
639-686
690-724
771-805



SUBUNIT VP1


PRRPO_ROTPG
RNA-DIRECTED RNA POLYMERASE
PORCINE ROTAVIRUS
 3-44
255-299
335-397
476-510
518-620
 966-



SUBUNIT VP1
(GROUP C/STRAIN COWDEN)





1007


PRRPO_ROTS1
RNA-DIRECTED RNA POLYMERASE
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
62-96
133-167
336-377
581-631
636-686
690-724
771-842



SUBUNIT VP1


PRRPO_SBMV
RNA-DIRECTED RNA POLYMERASE
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
60-96
133-167
535-569
579-631
639-686
690-724
771-805



SUBUNIT VP1


PRRPO_SCVLA
PROBABLE RNA-DIRECTED RNA
SOUTHERN BEAN MOSAIC VIRUS
628-665



POLYMERASE


PRRPO_TACV
RNA-DIRECTED RNA POLYMERASE
SACCHAROMYCES CEREVISIAE VIRUS L-A
100-134
147-191


PRRPO_TMGMV
RNA POLYMERASE
TACARIBE VIRUS
155-204
220-278
375-416
484-518
891-925
1030-
1285-
1981-










1081
1319
2015


PRRPO_TMV
PUTATIVE RNA-DIRECTED RNA
TOBACCO MILD GREEN MOSAIC VIRUS
401-449
682-720
765-818



POLYMERASE
(TMV STRAIN U2)


PRRPO_TMVKR
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (VULGARE)
 3-37
401-453
665-699



POLYMERASE


PRRPO_TMVTO
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN KOREAN)
 3-37
401-453
665-699



POLYMERASE


PRRPO_TNVD
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
 3-37
401-453
860-894



POLYMERASE


PRRPP_BRSVA
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN D)
102-144


PRRPP_CDVO
RNA POLYMERASE ALPHA SUBUNIT
BOVINE RESPIRATORY SYNCYTIAL VIRUS
 99-158
160-216




(STRAIN A51908)


PRRPP_HRSV
RNA POLYMERASE ALPHA SUBUNIT
CANINE DISTEMPER VIRUS
312-373




(STRAIN ONDERSTEPOORT)


PRRPP_HRSV1
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
 99-158
160-216


PRRPP_HRSVA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
 99-158
160-216




(SUBGROUP B/STRAI


PRRPP_HRSVL
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
 99-158
160-216




(STRAIN A2)


PRRPP_MEASE
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
 99-158
160-216




(SUBGROUP A/STRAI


PRRPP_MEASI
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
315-374
460-495


PRRPP_MEASY
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN IP-3-CA)
315-374
460-495


PRRPP_MUMP1
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN YAMAGATA-1)
315-374
460-495


PRRPP_MUMPE
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN SBL-1)
149-183
213-275


PRRPP_MUMPM
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN ENDERS)
214-276


PRRPP_NDVA
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
214-276


PRRPP_NDVB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS
100-134




(STRAIN AUSTRALIA-VICTORIA/32)


PRRPP_PI1HB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS
100-138




(STRAIN BEAUDETTE C/45)


PRRPP_PI1HC
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
 80-114
313-364
375-437




(STRAIN C35)


PRRPP_PI1HD
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
 80-114
313-364
375-437




(STRAIN C39)


PRRPP_PI1HE
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
 80-114
313-364
375-437




(STRAIN CI-5/73)


PRRPP_PI2H
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
 66-114
237-271
313-364
375-437




(STRAIN CI-14/830)


PRRPP_PI2HT
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
218-281


PRRPP_PI3B
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
218-281




(STRAIN TOSHIBA)


PRRPP_PI3H4
RNA POLYMERASE ALPHA SUBUNIT
BOVINE PARAINFLUENZA 3 VIRUS
 31-130
414-470


PRRPP_PI4HA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS
410-499




(STRAIN NIH 47885)


PRRPP_PI4HB
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4A VIRUS
 4-38
222-285




(STRAIN TOSHIBA)


PRRPP_PIRYV
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4B VIRUS
222-285




(STRAIN 68-333)


PRRPP_RABVA
RNA POLYMERASE ALPHA SUBUNIT
PIRY VIRUS
137-174


PRRPP_RABVC
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN AVO1)
 93-127


PRRPP_RABVE
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN CVS-11)
 93-127


PRRPP_RABVP
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN ERA), AND (STRAIN PM)
 93-127


PRRPP_RABVS
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN PV)
 93-127


PRRPP_SEND5
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN SAD B19
 93-127


PRRPP_SEND6
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
313-364
375-447


PRRPP_SENDF
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN 6/94)
323-364
375-447


PRRPP_SENDH
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN FUSHIMI)
313-364
375-447


PRRPP_SENDZ
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN HARRIS)
313-364
375-447


PRRPP_SV5
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z)
313-364
375-447


PRRPP_SYNV
RNA POLYMERASE ALPHA SUBUNIT
SIMIAN VIRUS 5 (STRAIN W3)
205-278


PRRPP_VSVIG
RNA POLYMERASE ALPHA SUBUNIT
SONCHUS YELLOW NET VIRUS
138-173
233-281


PRRPP_VSVIM
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
 3-43




(SEROTYPE INDIANA/STRAIN G


PRRPP_VSVJM
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
 3-43




(SEROTYPE INDIANA/STRAIN M


PRRPP_VSVJO
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
 3-37




(SEROTYPE NEW JERSEY/STRA


PRRPP_VSVSJ
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
 3-37




(SEROTYPE NEW JERSEY/STRA


PSPHR_AMEPV
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS
 3-43




(STRAIN SAN JUAN)


PSP12_VACCV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS
223-264
361-395


PSP12_VARV
SERINE PROTEINASE INHIBITOR
VACCINIA VIRUS (STRAIN WR)
21-86


PSP13_VACCC
SERINE PROTEINASE INHIBITOR 2
VARIOLA VIRUS
21-86


PSP13_VACCV
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN COPENHAGEN)
118-167
225-266


PSP13_VARV
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN WR)
118-167
225-266


PSPIA_VACCC
SERINE PROTEINASE INHIBITOR 3
VARIOLA VIRUS
122-171
229-270


PT2C2_CHVP1
SERINE PROTEINASE INHIBITOR 2
VACCINIA VIRUS (STRAIN COPENHAGEN)
11-65



HOMOLOG FIRST


PTAA2_VACCV
TYPE II RESTRICTION ENZYME CVIAII
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
48-85


PTAG8_FOWPV
TRANS-ACTIVATOR PROTEIN A2
VACCINIA VIRUS (STRAIN WR, COPENHAGEN,
 95-133
173-207




AND VARIOLA VI


PTAG8_VACCV
TRANS-ACTIVATOR PROTEIN FP0
FOWLPOX VIRUS
 3-51


PTAG8_VARV
TRANS-ACTIVATOR PROTEIN GK1
VACCINIA VIRUS (STRAIN WR),
 3-51




(STRAIN COPENHAGEN)


PTALA_BFDV
TRANS-ACTIVATOR PROTEIN GK1
VARIOLA VIRUS
 3-51


PTALA_POVBO
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING DISEASE VIRUS
291-325
464-498


PTALA_POVHA
LARGE T ANTIGEN
BOVINE POLYOMAVIRUS
303-337
495-537


PTALA_POVJC
LARGE T ANTIGEN
HAMSTER POLYOMAVIRUS
464-501
587-621


PTALA_POVLY
LARGE T ANTIGEN
POLYOMAVIRUS JC
153-187
589-623


PTALA_POVM3
LARGE T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
 3-41
206-258
437-478


PTALA_POVMA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
509-544


PTALA_POVMC
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
507-542


PTAMI_POVHA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS
504-539




(STRAIN CRAWFORD SMALL-PLAQUE)


PTAMI_POVM3
MIDDLE T ANTIGEN
HAMSTER POLYOMAVIRUS
339-378


PTAMI_POVMA
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
211-245
388-422


PTAMI_POVMC
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
192-226
369-403


PTASM_POVBO
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS
192-226
369-403




(STRAIN CRAWFORD SMALL-PLAQUE)


PTASM_POVLY
SMALL T ANTIGEN
BOVINE POLYOMAVIRUS
41-85


PTATR_NPVAC
SMALL T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
 3-41


PTATR_NPVBM
TRANS-ACTIVATING TRANSCRIPTIONAL
AUTOGRAPHA CALIFORNICA NUCLEAR
408-442
 46-480
489-523



REGULAT
POLYHEDROSIS VIRUS


PTATR_NPVOP
TRANS-ACTIVATING TRANSCRIPTIONAL
BOMBYX MORI NUCLEAR POLYHEDROSIS
413-447
451-485
494-528



REGULAT
VIRUS


PTAT_SIVA1
TRANS-ACTIVATING TRANSCRIPTIONAL
ORGYIA PSEUDOTSUGATA MULTICAPSID
391-455
511-554



REGULAT
POLYHEDROSIS VIRUS


PTAT_SIVAI
TAT PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
 73-109




(AGM155 ISOLATE)


PTAT_VILV
TAT PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
137-185




(ISOLATE AGM/CLONE GR1


PTAT_VILV1
TRANS-ACTIVATING TRANSCRIPTIONAL
VISNA LENTIVIRUS (STRAIN 1514)
28-74



REGULAT



PTAT_VILV2
TRANS-ACTIVATING TRANSCRIPTIONAL
VISNA LENTIVIRUS
40-74



REGULAT
(STRAIN 1514/CLONE LV1-1KS1)


PTCB_FLV
TRANS-ACTIVATING TRANSCRIPTIONAL
VISNA LENTIVIRUS
40-74



REGULAT
(STRAIN 1514/CLONE LV1-1KS2)


PTEGP_HSV11
T-CELL RECEPTOR BETA CHAIN PRECURSOR
FELINE LEUKEMIA VIRUS
279-321


PTEGP_HSVEA
TEGUMENT PHOSPHOPROTEIN US9
HERPES SIMPLEX VIRUS
27-61




(TYPE 1/STRAIN 17)


PTEGP_HSVEB
NONSENSE


PTEGP_HSVEK
NONSENSE


PTEGP_HSVSB
NONSENSE


PTEGU_EBV
NONSENSE


PTEGU_HCMVA
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
768-802
821-855
938-972
1101-
1208-
1479-
1700-
1809-








1138
1242
1516
1753
1867





1870-
1920-
3108-





1916
1954
3149


PTEGU_HSV11
PROBABLE LARGE TEGUMENT PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-71
215-249
543-581
700-738
868-909
936-977
1004-
1163-











1038
1200





1237-
2200-





1296
2235


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
731-765
801-842
1022-
1223-
1275-
1315-
1520-
1609-




(TYPE 1/STRAIN 17)


1059
1269
1309
1370
1531
1669





1673-
1749-
1820-
2670-





1714
1783
1854
2704


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
30-71
224-262
567-608
712-757
 951-
1091-
1192-
1357-




(TYPE 6/STRAIN GS)




1000
1181
1233
1400


PTEGU_HSVSA
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1
560-597
635-683
794-848
908-956
1108-
1155-
1399-
1487-




(STRAIN AB4P)




1151
1246
1458
1549





1619-
1661-
1702-
1806-
1947-





1657
1695
1736
1843
1981


PTEGU_VZVD
PROBABLE LARGE TEGUMENT PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
520-558
560-598
615-652
672-710
777-822
846-898
948-986
1287-












1332





1434-





1502


PTERM_ADE02
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
657-696
713-747
804-841
933-972
1117-
1415-
1528-
1572-









1158
1471
1562
1620





1633-
1719-
1945-
2727-





1705
1756
1986
2761


PTERM_ADE05
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 2
490-572


PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 5
490-592


PTERM_ADE12
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
491-559


PTJUN_AVIS1
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 12
443-491
497-538


PTMAF_AVIS4
TRANSFORMING PROTEIN JUN
AVIAN SARCOMA VIRUS (STRAIN 17)
210-284


PTOP1_SFVKA
TRANSFORMING PROTEIN MAF
AVIAN MUSCULOAPONEUROTIC
247-288
295-340




FIBROSARCOMA VIRUS AS42


PTOP2_ASFB7
DNA TOPOISOMERASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
127-183
269-310


PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
146-180
481-515
601-642
945-979
1038-
1123-









1093
1162


PTSIS_SMSAV
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS
146-180
480-514
600-641
902-936
944-978
1038-
1122-




(ISOLATE MALAWI LIL 20/1)





1091
1161


PTYSY_VZVD
PDGF-RELATED TRANSFORMING
SIMIAN SARCOMA VIRUS
16-71



PROTEIN P28-SIS


PUBIL_NPVOP
THYMIDYLATE SYNTHASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
215-260


PUL01_HCMVA
UBIQUITIN-LIKE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
43-80




POLYHEDROSIS VIRUS


PUL03_HSV11
HYPOTHETICAL PROTEIN UL1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
169-203


PUL03_HSV2H
PROTEIN UL3
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 94-128


PUL03_HSVEB
PROTEIN UL3
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
 92-126


PUL04_HSV11
GENE 60 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
 70-104


PUL06_EBV
PROTEIN UL4
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
102-136


PUL06_HCMVA
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
104-145
313-347
376-410


PUL06_HSV11
HYPOTHETICAL PROTEIN UL6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
216-250


PUL06_HSVEB
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
36-94
103-141
294-329
337-371
416-479


PUL06_HSVSA
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
 62-170
357-413
448-503


PUL06_VZVD
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 90-140
151-194
302-336
364-405


PUL08_HCMVA
VIRION GENE 54 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
 87-131
350-409
704-738


PUL09_HSVEB
HYPOTHETICAL PROTEIN UL8
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 6-50


PUL09_VZVD
ORIGIN OF REPLICATION BINDING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
174-208


PUL11_HCMVA
ORIGIN OF REPLICATION BINDING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
122-163


PUL13_HCMVA
NONSENSE


PUL14_HCMVA
HYPOTHETICAL PROTEIN UL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
47-81
185-227


PUL14_HSVEB
HYPOTHETICAL PROTEIN UL14
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
305-343


PUL14_PRVN3
HYPOTHETICAL GENE 48 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
52-96
246-283


PUL14_VZVD
UL14 PROTEIN HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3)
43-95


PUL16_HSVEB
HYPOTHETICAL GENE 46 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
 61-103


PUL17_HSV6U
GENE 46 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
266-300


PUL21_HSVEB
PROTEIN 10R
HERPES SIMPLEX VIRUS
239-280




(TYPE 6/STRAIN UGANDA-1102)


PUL23_HCMVA
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
44-78
421-474


PUL24_HCMVA
HYPOTHETICAL PROTEIN UL23
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
213-253


PUL24_ILTVT
HYPOTHETICAL PROTEIN UL24
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 5-39


PUL25_HCMVA
PROTEIN UL24 HOMOLOG
INFECTIOUS LARYNGOTRACHEITIS VIRUS
161-195




(STRAIN THORNE V88


PUL25_HSV11
HYPOTHETICAL PROTEIN UL25
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
255-341
351-399


PUL25_HSVEB
VIRION PROTEIN UL25
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
370-411


PUL25_HSVSA
VIRION PROTEIN UL25
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
364-413


PUL25_ILTVT
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
29-92
183-231
365-406


PUL25_VZVD
64.1 KD VIRION PROTEIN
INFECTIOUS LARYNGOTRACHEITIS VIRUS
38-84
165-206




(STRAIN THORNE V88


PUL31_HCMVA
VIRION GENE 34 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
340-388


PUL31_HSVEB
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
244-285


PUL31_VZVD
GENE 29 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
153-187


PUL32_HSVEB
GENE 27 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
163-197


PUL32_VZVD
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPESVIRUS TYPE 1
342-376




(STRAIN AB4P) (STRAIN AB1)


PUL33_HCMVA
PROBABLE MAJOR ENVELOPE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
 72-106
296-344



GLYCOPROTEIN 26


PUL33_VZVD
G-PROTEIN COUPLED RECEPTOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 94-135
309-352



HOMOLOG UL33


PUL34_EBV
GENE 25 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
29-63


PUL34_HCMVA
BFRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
159-200


PUL34_HSV11
HYPOTHETICAL PROTEIN UL34
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
113-147


PUL35_HCMVA
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
187-221


PUL37_EBV
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
231-268


PUL37_HSV11
PROTEIN BOLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
708-742


PUL37_HSVEB
PROTEIN UL37
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
853-891


PUL37_HSVSA
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
 82-137
311-345
614-648
715-750
781-822


PUL37_VZVD
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 6-65
682-741


PUL38_HCMVA
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
719-753
786-827


PUL41_VZVD
HYPOTHETICAL PROTEIN UL38
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
10-51


PUL42_HSV11
HOST SHUTOFF VIRION PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
330-366


PUL42_HSVEB
DNA-BINDING PROTEIN UL42
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
134-168
221-263


PUL43_HCMVA
DNA-BINDING GENE 18 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
138-172


PUL43_HSVE4
HYPOTHETICAL PROTEIN UL43
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 72-109


PUL43_VZVD
MEMBRANE PROTEIN UL43 HOMOLOG
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
27-68


PUL45_HSV1K
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
312-363


PUL45_HSV1M
PROTEIN UL45
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
 96-137


PUL47_HCMVA
PROTEIN UL45
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN MP)
 96-137


PUL47_HSV11
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
114-165
448-485
745-856


PUL47_HSV1F
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
473-518


PUL47_HSVBP
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F
473-518


PUL47_HSVE4
80.7 KD ALPHA TRANS-INDUCING PROTEIN
BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2)
561-612


PUL47_HSVEB
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
183-246
582-620
825-866


PUL47_VZVD
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
219-253
371-412
817-866


PUL50_HCMVA
ALPHA TRANS-INDUCING FACTOR 91.8 KD
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
 84-135
156-209
664-701



PROTEIN


PUL51_HSV11
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
155-189


PUL51_HSVE4
PROTEIN UL51
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
118-169


PUL51_HSVEB
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
121-162


PUL51_VZVD
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
120-161


PUL52_EBV
GENE 7 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
122-163


PUL52_HSV11
PROBABLE DNA REPLICATION
EPSTEIN-BARR VIRUS (STRAIN B95-8)
188-255



PROTEIN BSLF1


PUL52_HSVEB
DNA REPLICATION PROTEIN UL52
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
189-223


PUL52_HSVSA
DNA REPLICATION PROTEIN UL52
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
141-182
929-970


PUL52_VZVD
PROBABLE DNA REPLICATION GENE 56
HERPESVIRUS SAIMIRI (STRAIN 11)
445-483



PROTEIN


PUL53_HCMVA
PROBABLE DNA REPLICATION GENE 6
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
301-342



PROTEIN


PUL55_HSV2H
PROTEIN UL53
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
12-48


PUL64_HCMVA
PROTEIN UL55
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
151-185


PUL70_HCMVA
HYPOTHETICAL PROTEIN UL64
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
32-73


PUL74_HCMVA
PROBABLE DNA REPLICATION PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
39-99



UL70


PUL87_HSV6U
HYPOTHETICAL PROTEIN UL74
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
43-79


PUL87_HSVSA
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS
729-770




(TYPE 6/STRAIN UGANDA-1102)


PUL88_HCMVA
HYPOTHETICAL GENE 24 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
366-400
582-616


PUL91_HSVSA
HYPOTHETICAL PROTEIN UL88
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
357-391


PUL92_EBV
HYPOTHETICAL GENE 30 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
24-58


PUL92_HCMVA
HYPOTHETICAL PROTEIN BDLF4
EPSTEIN-BARR VIRUS (STRAIN B95-8)
107-144
188-222


PUL92_HSV6U
HYPOTHETICAL PROTEIN UL92
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 79-116


PUL92_HSVSA
HYPOTHETICAL PROTEIN 9R
HERPES SIMPLEX VIRUS
101-145
174-216




(TYPE 6/STRAIN UGANDA-1102)


PUL93_HCMVA
HYPOTHETICAL GENE 31 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 88-122


PUL95_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
23-57
299-384


PUL95_HSV6U
HYPOTHETICAL PROTEIN UL95
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-71
259-293


PUL96_HCMVA
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS
 73-151
233-270




(TYPE 6/STRAIN UGANDA-1102)


PUL96_HSV6U
HYPOTHETICAL PROTEIN UL96
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 51-103


PUL96_HSVSA
HYPOTHETICAL PROTEIN 14R
HERPES SIMPLEX VIRUS
 53-113




(TYPE 6/STRAIN UGANDA-1102)


PULA2_HCMVA
HYPOTHETICAL GENE 35 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 45-100


PULA4_HCMVA
HYPOTHETICAL PROTEIN UL102
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 6-40
758-792


PULD0_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 1-56
130-171
330-364
439-492
541-575


PUNG_HSV11
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 84-125


PUNG_HSV23
URACIL-DNA GLYCOSYLASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
227-268


PUNG_HSV2H
URACIL-DNA GLYCOSYLASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
188-229


PUNG_HSVSA
URACIL-DNA GLYCOSYLASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52
148-189


PUNG_SFVKA
URACIL-DNA GLYCOSYLASE
HERPESVIRUS SAIMIRI (STRAIN 11)
135-176


PUS02_HSVEB
URACIL-DNA GLYCOSYLASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 81-115


PUS02_HSVEK
GENE 68 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
 79-120


PUS07_HCMVA
US1 PROTEIN
EQUINE HERPESVIRUS TYPE 1
 86-120




(STRAIN KENTUCKY A)


PUS11_HCMVA
HYPOTHETICAL PROTEIN HXLF5

 2-36


PUS14_HCMVA
HYPOTHETICAL PROTEIN HXLF1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)


PUS18_HCMVA
HYPOTHETICAL PROTEIN HVLF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 3-51


PUS23_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
187-225


PUS24_HCMVA
HYPOTHETICAL PROTEIN HHLF7
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
294-335
535-578


PUS26_HCMVA
HYPOTHETICAL PROTEIN HHLF6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
135-172


PUS27_HCMVA
HYPOTHETICAL PROTEIN HHLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
535-584


PUS30_HCMVA
G-PROTEIN COUPLED RECEPTOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 6-40



HOMOLOG US27


PV125_AMVLE
HYPOTHETICAL PROTEIN HHRF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
135-169
274-312


PV143_NPVAC
125 KD PROTEIN
ALFALFA MOSAIC VIRUS
18-52
326-367
591-649




(STRAIN 425/ISOLATE LEIDEN


PV16K_TRVPS
HELICASE
AUTOGRAPHA CALIFORNICA NUCLEAR
313-350
1114-
1179-




POLYHEDROSIS VIRUS

1150
1213


PV16K_TRVSY
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PSG)
 75-117


PV1A_BBMV
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN SYM)
 75-117


PV1A_BMV
1A PROTEIN
BROAD BEAN MOTTLE VIRUS
21-55
349-405
492-526
710-751
837-884
890-924


PV1A_CCMV
1A PROTEIN
BROME MOSAIC VIRUS
 4-66
348-411


PV1A_CMVFN
1A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
 4-53
242-276
348-389
487-526


PV1A_CMVO
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
11-66
393-434
584-619
868-916


PV1A_CMVQ
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
11-66
393-434
584-619
868-916


PV1A_PSVJ
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
11-66
393-434


PV1A_TAV
1A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
 4-66


PV23K_HSVTH
1A PROTEIN
TOMATO ASPERMY VIRUS
11-59
392-433
857-923


PV24K_BDV
23.5 KD PROTEIN
TURKEY HERPESVIRUS (STRAIN H2)
177-211


PV25K_NPVAC
24 KD ANTIGEN
BORNA DISEASE VIRUS
 63-121
130-171


PV28K_PLRV1
25 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
 4-50




POLYHEDROSIS VIRUS


PV28K_PLRVW
28 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
116-150


PV290_ASFL5
28 KD PROTEIN
POTATO LEAFROLL VIRUS
116-150




(STRAIN WAGENINGEN)


PV29K_PEBV
LIS 290 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN LIS57)
138-183


PV29K_TRVSY
29.6 KD PROTEIN
EARLY BROWNING VIRUS
115-192


PV29K_TRVTC
29 KD PROTEIN
TOBACCO RATTLE VIRUS
167-201




(STRAIN SYM), AND (STRAIN PSG)


PV2A_CCMV
29 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
45-79


PV2A_CMVFN
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
768-806


PV2A_PSVJ
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
386-420


PV2A_TAV
2A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
717-751


PV30K_TRVTC
2A PROTEIN
TOMATO ASPERMY VIRUS
722-756


PV360_ASFB7
29.1 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
105-218


PV362_ASFB7
K′360 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
53-87
151-192


PV363_ASFB7
K′362 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
 54-102
161-212
290-324


PV3A_BMV
D′363 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
153-199


PV3A_CMVFN
3A PROTEIN
BROME MOSAIC VIRUS
11-45


PV3A_CMVM
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
215-255


PV3A_CMVO
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN M)
215-255


PV3A_CMVY
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
215-255


PV51K_ACLSV
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Y)
215-255


PV51K_BWYVF
50.8 KD PROTEIN
APPLE CHLOROTIC LEAF SPOT VIRUS
 72-106


PV51K_BWYVG
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
113-147
196-233
404-451


PV56K_PLRV1
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE GB1)
113-147
196-233
407-451


PV56K_PLRVW
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
47-81
438-472


PV58K_BSMV
56 KD PROTEIN
POTATO LEAFROLL VIRUS
47-81
438-475




(STRAIN WAGENINGEN)


PV66K_BWYVF
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
128-162
323-371


PV70K_PLRV1
66.2 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
480-521


PV70K_PLRVW
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
 98-144
514-548


PV90K_AMVLE
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS
 98-144
409-443
514-548




(STRAIN WAGENINGEN)


PVA04_VACCC
90 KD PROTEIN
ALFALFA MOSAIC VIRUS
107-141




(STRAIN 425/ISOLATE LEIDEN)


PVA04_VACCV
PROTEIN A4
VACCINIA VIRUS (STRAIN COPENHAGEN)
32-66
231-275


PVA04_VARV
PROTEIN A4
VACCINIA VIRUS (STRAIN WR)
32-66
231-275


PVA06_VACCC
PROTEIN A4
VARIOLA VIRUS
22-66
210-265


PVA06_VACCV
PROTEIN A6
VACCINIA VIRUS (STRAIN COPENHAGEN)
 97-213
314-355


PVA06_VARV
PROTEIN A6
VACCINIA VIRUS (STRAIN WR)
 96-212
313-354


PVA08_VACCC
PROTEIN A6
VARIOLA VIRUS
 97-213
313-358


PVA08_VARV
PROTEIN A8
VACCINIA VIRUS (STRAIN COPENHAGEN)
176-236


PVA09_VACCC
PROTEIN A8
VARIOLA VIRUS
176-236


PVA09_VARV
PROTEIN A9
VACCINIA VIRUS (STRAIN COPENHAGEN)
46-81


PVA11_VACCC
PROTEIN A9
VARIOLA VIRUS
46-95


PVA11_VARV
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
 97-134
141-175
219-283


PVA12_VACCC
PROTEIN A11
VARIOLA VIRUS
 98-176
220-284


PVA12_VARV
PROTEIN A12
VACCINIA VIRUS (STRAIN COPENHAGEN)
114-148


PVA18_VACCC
PROTEIN A12
VARIOLA VIRUS
111-152


PVA18_VACCV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN
433-467


PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN WR)
307-341
433-467


PVA20_VACCC
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
307-341
433-467


PVA20_VARV
PROTEIN A20
VACCINIA VIRUS (STRAIN COPENHAGEN)
 1-67


PVA22_VACCC
PROTEIN A20
VARIOLA VIRUS
 1-67


PVA22_VARV
PROTEIN A22
VACCINIA VIRUS (STRAIN COPENHAGEN)
28-69


PVA23_VACCC
PROTEIN A22
VARIOLA VIRUS
39-80


PVA23_VARV
PROTEIN A23
VACCINIA VIRUS (STRAIN COPENHAGEN)
 95-143
173-207
255-289
344-382


PVA31_VARV
PROTEIN A23
VARIOLA VIRUS
 95-143
173-207
255-289
344-382


PVA32_VACCV
PROTEIN A31
VARIOLA VIRUS
 88-126


PVA32_VARV
PROTEIN A32
VACCINIA VIRUS




(STRAIN WR), AND (STRAIN COPENHAGEN


PVA33_VARV
PROTEIN A32
VARIOLA VIRUS
217-251


PVA36_VACCV
PROTEIN A33
VARIOLA VIRUS
63-97


PVA36_VARV
PROTEIN A36 PRECURSOR
VACCINIA VIRUS
26-67
109-155




(STRAIN WR), AND (STRAIN COPENHAGEN)


PVA37_VACCC
PROTEIN A36 PRECURSOR
VARIOLA VIRUS
26-67


PVA37_VACCV
PROTEIN A37
VACCINIA VIRUS (STRAIN COPENHAGEN)
24-65


PVA38_VACCC
PROTEIN A37
VACCINIA VIRUS (STRAIN WR)
24-65


PVA38_VACCV
PROTEIN A38
VACCINIA VIRUS (STRAIN COPENHAGEN)
44-91


PVA38_VARV
PROTEIN A38
VACCINIA VIRUS (STRAIN WR)
44-91


PVA39_VACCC
PROTEIN A38
VARIOLA VIRUS
44-91


PVA39_VACCV
PROTEIN A39
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-71


PVA46_VACCC
PROTEIN A39
VACCINIA VIRUS (STRAIN WR)
 75-109


PVA46_VACCV
PROTEIN A46
VACCINIA VIRUS (STRAIN COPENHAGEN)
 81-126


PVA46_VARV
PROTEIN A46
VACCINIA VIRUS (STRAIN WR)
 81-126


PVA47_VACCC
PROTEIN A46
VARIOLA VIRUS
 81-126


PVA47_VACCV
PROTEIN A47
VACCINIA VIRUS (STRAIN COPENHAGEN)
62-96
143-184


PVA47_VARV
PROTEIN A47
VACCINIA VIRUS (STRAIN WR)
62-96
143-184


PVA49_VACCC
PROTEIN A47
VARIOLA VIRUS
62-96
143-184


PVA49_VACCV
PROTEIN A49
VACCINIA VIRUS (STRAIN COPENHAGEN)
 3-40
126-160


PVA49_VARV
PROTEIN A49
VACCINIA VIRUS (STRAIN WR)
 3-40
126-160


PVA52_VACCC
PROTEIN A49
VARIOLA VIRUS
 3-40
126-160


PVA52_VACCV
PROTEIN A52
VACCINIA VIRUS (STRAIN COPENHAGEN)
 91-132


PVA57_VACCC
PROTEIN A52
VACCINIA VIRUS (STRAIN WR)
 91-132


PVA57_VACCV
GUANYLATE KINASE HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
134-168


PVAL1_MSVK
GUANYLATE KINASE HOMOLOG
VACCINIA VIRUS (STRAIN WR)
134-168


PVAL1_MSVN
AL1 PROTEIN
MAIZE STREAK VIRUS (KENYAN ISOLATE)
230-269


PVAL1_MSVS
AL1 PROTEIN
MAIZE STREAK VIRUS (NIGERIAN ISOLATE)
228-262


PVAL1_SLCV
AL1 PROTEIN
MAIZE STREAK VIRUS
228-262




(SOUTH-AFRICAN ISOLATE)


PVAL1_TYDVA
AL1 PROTEIN
SQUASH LEAF CURL VIRUS
117-151


PVAL3_ABMVW
AL1 PROTEIN
TOBACCO YELLOW DWARF VIRUS
191-225




(STRAIN AUSTRALIA)


PVAL3_BGMV
AL3 PROTEIN
ABUTILON MOSAIC VIRUS
44-78
 83-124




(ISOLATE WEST INDIA)


PVAL3_PYMVV
AL3 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
44-78
 83-124


PVAL3_SLCV
AL3 PROTEIN
POTATO YELLOW MOSAIC VIRUS
30-78
 87-121




(ISOLATE VENEZUELA)


PVAL3_TGMV
AL3 PROTEIN
SQUASH LEAF CURL VIRUS
46-80
 91-125


PVAT_CAMVC
AL3 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
44-78


PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
 84-127




(STRAIN CM-1841)


PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70




(STRAIN D/H)


PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
 93-127




(STRAIN BBC)


PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
 93-127




(STRAIN NY8153)


PVAT_CAMVS
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
 93-127




(STRAIN PV147)


PVAT_CAMVW
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
22-70
 93-130




(STRAIN STRASBOURG)


PVAT_CERV
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS
36-70




(STRAIN W260)


PVB03_VACCV
APHID TRANSMISSION PROTEIN
CARNATION ETCHED RING VIRUS
 99-138


PVB04_VACCC
PROTEIN B3
VACCINIA VIRUS (STRAIN WR)
108-142


PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)
 89-123
321-372
496-530


PVB04_VARV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
 89-123
321-372


PVB05_VACC0
PROTEIN B4
VARIOLA VIRUS
 89-123
324-372
496-530


PVB05_VACCC
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN LC16MO)
254-298



PRECURSOR


PVB05_VACCL
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
254-298



PRECURSOR


PVB05_VACCV
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN LISTER)
254-298



PRECURSOR


PVB07_VACCV
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
254-298



PRECURSOR


PVB08_VACCC
PROTEIN B7 PRECURSOR
VACCINIA VIRUS
28-62




(STRAIN WR), AND (STRAIN COPENHAGEN)


PVB08_VACCV
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
26-60


PVB18_VACCC
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
26-60


PVB18_VACCV
PROTEIN B18
VACCINIA VIRUS (STRAIN COPENHAGEN)
337-375
491-532


PVB18_VARV
PROTEIN B18
VACCINIA VIRUS (STRAIN WR)
337-375
491-532


PVB19_VACCC
PROTEIN B18
VACCINIA VIRUS
337-378
491-532


PVB19_VACCD
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
 87-121


PVB19_VACCV
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN DAIREN I)
 85-119


PVB20_VACCC
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN WR)
 85-119


PVB21_VACCV
PROTEIN B20
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-85


PVBL1_BGMV
PROTEIN B21
VACCINIA VIRUS (STRAIN WR)
61-95


PVBL1_SLCV
BL1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
159-193


PVBL1_TGMV
BL1 PROTEIN
SQUASH LEAF CURL VIRUS
159-193


PVBR1_BGMV
BL1 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
159-193


PVBR1_SLCV
BR1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
172-206


PVBR1_TGMV
BR1 PROTEIN
SQUASH LEAF CURL VIRUS
20-61


PVC02_VACCC
BR1 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
25-59


PVC02_VACCV
PROTEIN C2
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-82
262-302
391-442


PVC04_SFVKA
PROTEIN C2
VACCINIA VIRUS (STRAIN WR)
37-82
262-302
391-442


PVC04_VACCC
PROTEIN C4
SHOPE FIBROMA VIRUS (STRAIN KASZA)
175-223
374-408


PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-46


PVC04_VARV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
12-46


PVC05_SFVKA
PROTEIN C4
VARIOLA VIRUS
12-46


PVC05_VACCC
HYPOTHETICAL PROTEIN C5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 82-125


PVC05_VACCV
PROTEIN C5
VACCINIA VIRUS (STRAIN COPENHAGEN)
31-68


PVC05_VARV
PROTEIN C5
VACCINIA VIRUS (STRAIN WR)
31-68


PVC08_SFVKA
PROTEIN C5
VARIOLA VIRUS
32-70
 73-121


PVC09_SFVKA
HYPOTHETICAL PROTEIN C8
SHOPE FIBROMA VIRUS (STRAIN KASZA)
45-86


PVC09_VACCC
HYPOTHETICAL PROTEIN C9
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 63-106


PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
 82-116
168-226
289-325
575-612


PVC10_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
 82-116
168-226
289-323
575-612


PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
136-180


PVC10_VARV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
136-176


PVC12_SFVKA
PROTEIN C10
VARIOLA VIRUS
136-170


PVC13_SFVKA
HYPOTHETICAL PROTEIN C12
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 2-36


PVC16_VACCC
PROTEIN C13
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 3-66
137-182
189-240


PVC17_VACCC
PROTEIN C16/B22
VACCINIA VIRUS (STRAIN COPENHAGEN)
142-176


PVC18_VACCC
PROTEIN C17/B23
VACCINIA VIRUS (STRAIN COPENHAGEN)
100-155
325-359


PVC19_SFVKA
PROTEIN C18/B24
VACCINIA VIRUS (STRAIN COPENHAGEN)
40-98


PVC19_VACCC
PROTEIN C19
SHOPE FIBROMA VIRUS (STRAIN KASZA)
56-97


PVCAP_EBV
PROTEIN C19/B25
VACCINIA VIRUS (STRAIN COPENHAGEN)
218-252


PVCAP_HCMVA
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
150-184
670-709


PVCAP_HSV11
MAJOR CAPSID PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
136-174
191-225
260-294


PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
116-175
308-356


PVCAP_HSVEB
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS
136-174
230-266
311-382


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
150-184
304-352


PVCAP_PRVIS
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
479-520
673-714
755-799


PVCAP_VZVD
MAJOR CAPSID PROTEIN
PSEUDORABIES VIRUS (STRAIN INDIANA S)
105-160
292-326


PVCG3_NPVAC
MAJOR CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
128-198
316-350


PVD05_FOWP1
DNA-BINDING PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
110-248




POLYHEDROSIS VIRUS


PVD05_VACCC
92.6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
145-181


PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
123-157


PVD05_VARV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
123-157


PVD09_VACCC
PROTEIN D5
VARIOLA VIRUS
123-157


PVD09_VACCV
PROTEIN D9
VACCINIA VIRUS (STRAIN COPENHAGEN)
126-160


PVD09_VARV
PROTEIN D9
VACCINIA VIRUS (STRAIN WR)
126-160


PVD10_FOWP1
PROTEIN D9
VARIOLA VIRUS
126-160


PVD10_SFVKA
PROTEIN D10
FOWLPOX VIRUS (STRAIN FP-1)
65-99
188-222


PVD10_VARV
PROTEIN D10
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 4-52


PVDBP_CAMVC
PROTEIN D10
VARIOLA VIRUS
 67-105


PVDBP_CAMVD
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
 1-35


PVDBP_CAMVE
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
 1-35


PVDBP_CAMVN
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
 1-35


PVDBP_CAMVS
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
 1-35


PVE02_VACCC
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
 1-35




(STRAIN STRASBOURG)


PVE02_VACCV
PROTEIN E2
VACCINIA VIRUS (STRAIN COPENHAGEN)
282-336


PVE02_VARV
PROTEIN E2
VACCINIA VIRUS (STRAIN WR)
282-336


PVE03_VACCC
PROTEIN E2
VARIOLA VIRUS
282-336


PVE03_VACCV
PROTEIN E3
VACCINIA VIRUS (STRAIN COPENHAGEN)
17-61


PVE03_VARV
PROTEIN E3
VACCINIA VIRUS (STRAIN WR)
17-61


PVE05_VACCC
PROTEIN E3
VARIOLA VIRUS
17-61


PVE05_VACCD
PROTEIN E5
VACCINIA VIRUS (STRAIN COPENHAGEN)
28-93


PVE05_VACCV
PROTEIN E5
VACCINIA VIRUS (STRAIN DAIREN 1)
 38-103


PVE05_VARV
PROTEIN E5
VACCINIA VIRUS (STRAIN WR)
 38-103


PVE06_VACCC
PROTEIN E5
VARIOLA VIRUS
 38-103


PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
105-139
232-266


PVE06_VARV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
105-139
232-266


PVE18_NPVAC
PROTEIN E6
VARIOLA VIRUS
105-139
367-401


PVE1_HPV1A
EARLY 18.5 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
112-163




POLYHEDROSIS VIRUS


PVE1_HPV31
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
137-171


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
56-90


PVE1_HPV35
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
33-67
133-167


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
56-90


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
59-96


PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
55-89
312-346


PVE1_HPV58
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
25-87


PVE1_HPV6B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
33-67
119-174


PVE1_PAPVE
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
265-299


PVE26_NPVAC
E1 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS
176-210


PVE2_CRPVK
EARLY 25.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
 72-117




POLYHEDROSIS VIRUS


PVE2_HPV05
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE)
 3-44




PAPILLOMAVIRUS (STRAIN KANS


PVE2_HPV08
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
 5-57
276-310
342-383
437-471


PVE2_HPV16
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
 5-55
148-182


PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
 61-105
315-349


PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
 65-100


PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
 3-37
159-193


PVE2_HPV31
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
13-47
159-193


PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
 61-105


PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
 63-101
297-331


PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
 62-106
158-192


PVE2_HPV41
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
 74-110
323-357


PVE2_HPV47
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
 6-54


PVE2_HPV51
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
 5-55
148-182


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
154-191


PVE2_HPV58
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
13-47
179-213


PVE2_HPV5B
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
 2-36


PVE2_PAPVD
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
 5-57


PVE2_PAPVE
PROBABLE E2 PROTEIN
DEER PAPILLOMAVIRUS
107-141


PVE2_PCPV1
PROBABLE E2 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS
113-150


PVE2_RHPV1
E2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
318-361


PVE39_NPVAC
E2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
 62-106
307-341


PVE39_NPVOP
EARLY 39 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
20-57




POLYHEDROSIS VIRUS


PVE4_HPV18
EARLY 39 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
119-156




POLYHEDROSIS VIRUS


PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
42-86


PVE5_HPV5B
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
63-97


PVEF_GVTN
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
 3-40
 96-130


PVENV_BEV
VIRAL ENHANCING FACTOR (VEF)
TRICHOPLUSIA NI GRANULOSIS VIRUS (TNGV)
681-719



(104 KD GLYCOP


PVENV_DHVI1
ENVELOPE PROTEIN
BERNE VIRUS (BEV)
195-229


PVENV_MCV1
ENVELOPE GLYCOPROTEIN PRECURSOR
DHORI VIRUS (STRAIN INDIAN/1313/61) (DHO)
318-366


PVENV_MCV2
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 1
252-286



(43 KD PROTEIN) (P43K
(MCVI)


PVENV_THOGV
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 2
252-286



(43 KD PROTEIN) (P43K
(MCVII)


PVENV_VACCC
ENVELOPE GLYCOPROTEIN PRECURSOR
THOGOTO VIRUS (THO)
313-354



(SURFACE


PVENV_VACCI
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
257-295



(37 KD PROTEIN) (P37K



PVENV_VACCP
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN 1HD-J)
257-295



(37 KD PROTEIN) (P37K



PVENV_VACCV
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN L-IVP)
257-295



(37 KD PROTEIN) (P37K



PVENV_VARV
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN WR)
257-295



(37 KD PROTEIN) (P37K



PVETS_NPVAC
MAJOR ENVELOPE PROTEIN
VARIOLA VIRUS
257-295



(37 KD PROTEIN) (P37K



PVF01_VACCC
ECORI-T SITE PROTEIN ETS
AUTOGRAPHA CALIFORNICA NUCLEAR
 1-53




POLYHEDROSIS VIRUS (


PVF01_VACCV
PROTEIN F1
VACCINIA VIRUS (STRAIN COPENHAGEN),
46-80
124-158




AND VACCINIA VIRUS


PVF03_VACCC
PROTEIN F1 (FRAGMENT)
VACCINIA VIRUS (STRAIN WR)
46-80
124-158


PVF03_VACCV
PROTEIN F3
VACCINIA VIRUS (STRAIN COPENHAGEN)
 71-110


PVF05_VACCC
PROTEIN F3
VACCINIA VIRUS (STRAIN WR)
 71-110


PVF05_VACCP
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 81-129
282-320



PRECURSOR


PVF05_VACCV
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN L-IVP)
 81-129
282-320



PRECURSOR


PVF05_VARV
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN WR)
 81-129
283-321



PRECURSOR


PVF06_VARV
36 KD MAJOR MEMBRANE PROTEIN
VARIOLA VIRUS
 81-122
281-322



PRECURSOR


PVF11_VACCC
PROTEIN F6
VARIOLA VIRUS
 8-44


PVF11_VACCP
PROTEIN F11
VACCINIA VIRUS (STRAIN COPENHAGEN)
217-258
269-315


PVF11_VARV
PROTEIN F11
VACCINIA VIRUS (STRAIN L-IVP)
213-254
265-311


PVF12_VACCC
PROTEIN F11
VARIOLA VIRUS
41-75
269-315


PVF12_VACCP
PROTEIN F12
VACCINIA VIRUS (STRAIN COPENHAGEN)
 1-67
102-143
199-236
350-388
544-581


PVF12_VARV
PROTEIN F12
VACCINIA VIRUS (STRAIN L-IVP)
 1-67
102-143
199-236
350-388
544-581


PVF16_VACCC
PROTEIN F12
VARIOLA VIRUS
 1-67
199-236
350-388
547-581


PVF16_VACCP
PROTEIN F16
VACCINIA VIRUS (STRAIN COPENHAGEN)
155-194


PVF16_VARV
PROTEIN F16
VACCINIA VIRUS (STRAIN L-IVP)
155-194


PVFP3_FOWPV
PROTEIN F16
VARIOLA VIRUS
155-194


PVFP4_FOWPV
PROTEIN FP3
FOWLPOX VIRUS
 1-43


PVFP7_FOWPV
PROTEIN FP4
FOWLPOX VIRUS
139-173
239-273


PVFPL_FOWP1
PROTEIN FP7
FOWLPOX VIRUS
23-57


PVFUS_VACCC
FPLEET PROTEIN (FRAGMENT)
FOWLPOX VIRUS (STRAIN FP-1)
 77-111


PVFUS_VACCV
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
30-64


PVG01_HSVI1
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
30-64


PVG01_VACCC
HYPOTHETICAL GENE 1 PROTEIN
ICTALURID HERPESVIRUS 1
271-306
512-563
591-647
730-764




(CHANNEL CATFISH VIRUS) (CCV)


PVG01_VACCV
PROTEIN G1
VACCINIA VIRUS (STRAIN COPENHAGEN)
301-339


PVG01_VARV
PROTEIN G1 (FRAGMENT)
VACCINIA VIRUS (STRAIN WR)
240-278


PVG03_HSVEB
PROTEIN G1
VARIOLA VIRUS
301-339


PVG03_HSVEK
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1
143-177




(STRAIN AB4P) (EHV-1)


PVG03_VARV
GENE 3 PROTEIN (ORF L1)
EQUINE HERPESVIRUS TYPE 1
143-177




(STRAIN KENTUCKY A) (EHV-1)


PVG05_VACCC
PROTEIN G3
VARIOLA VIRUS
64-98


PVG05_VARV
PROTEIN G5
VACCINIA VIRUS (STRAIN COPENHAGEN)
117-158
255-289
355-389


PVG06_HSVI1
PROTEIN G5
VARIOLA VIRUS
117-158
255-289
355-389


PVG07_HSVI1
HYPOTHETICAL GENE 6 MEMBRANE
ICTALURID HERPESVIRUS 1
 61-109



PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)


PVG07_VACCC
HYPOTHETICAL GENE 7 MEMBRANE
ICTALURID HERPESVIRUS 1
 69-103



PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)


PVG07_VARV
PROTEIN G7
VACCINIA VIRUS (STRAIN COPENHAGEN)
114-175
324-358


PVG09_VACCC
PROTEIN G7
VARIOLA VIRUS
114-175
324-358


PVG09_VACCV
PROTEIN F1 (PROTEIN G9)
VACCINIA VIRUS (STRAIN COPENHAGEN)
304-338


PVG09_VARV
PROTEIN F1 (PROTEIN G9)
VACCINIA VIRUS (STRAIN WR)
304-338



(FRAGMENT)


PVG10_HSVI1
PROTEIN F1 (PROTEIN G9)
VARIOLA VIRUS
304-338


PVG12_SPV1R
HYPOTHETICAL GENE 10 MEMBRANE
ICTALURID HERPESVIRUS 1
63-97



PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)


PVG16_HSVSA
GENE 12 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
11-45


PVG17_HSVI1
HYPOTHETICAL GENE 16 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
58-95


PVG18_HSVI1
HYPOTHETICAL GENE 17 PROTEIN
ICTALURID HERPESVIRUS 1
 92-129
177-211




(CHANNEL CATFISH VIRUS) (CCV)


PVG1L_AMEPV
HYPOTHETICAL GENE 18 PROTEIN
ICTALURID HERPESVIRUS 1
174-208
215-256




(CHANNEL CATFISH VIRUS) (CCV)


PVG1_SPV1R
G1L PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
407-441


PVG1_SPV4
CAPSID PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
136-170
256-297
320-357


PVG22_HSVI1
CAPSID PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
287-321


PVG24_HSVI1
HYPOTHETICAL GENE 22 PROTEIN
ICTALURID HERPESVIRUS 1
117-158
437-629
660-892
899-




(CHANNEL CATFISH VIRUS) (CCV)



1055


PVG27_HSVI1
HYPOTHETICAL GENE 24 PROTEIN
ICTALURID HERPESVIRUS 1
 7-72
 74-108




(CHANNEL CATFISH VIRUS) (CCV)


PVG28_HSVI1
HYPOTHETICAL GENE 27 PROTEIN
ICTALURID HERPESVIRUS 1
164-219




(CHANNEL CATFISH VIRUS) (CCV)


PVG2R_AMEPV
HYPOTHETICAL GENE 28 PROTEIN
ICTALURID HERPESVIRUS 1
253-290




(CHANNEL CATFISH VIRUS) (CCV)


PVG2_SPV1R
HYPOTHETICAL G2R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
29-63
184-218


PVG2_SPV4
GENE 2 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
222-256
285-326


PVG33_HSVI1
GENE 2 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
255-310


PVG34_HSVI1
HYPOTHETICAL GENE 33 PROTEIN
ICTALURID HERPESVIRUS 1
149-183




(CHANNEL CATFISH VIRUS) (CCV)


PVG35_HSVI1
HYPOTHETICAL GENE 34 PROTEIN
ICTALURID HERPESVIRUS 1
345-379




(CHANNEL CATFISH VIRUS) (CCV)


PVG37_HSVI1
HYPOTHETICAL GENE 35 PROTEIN
ICTALURID HERPESVIRUS 1
17-90




(CHANNEL CATFISH VIRUS) (CCV)


PVG38_HSVI1
HYPOTHETICAL GENE 37 PROTEIN
ICTALURID HERPESVIRUS 1
435-472




(CHANNEL CATFISH VIRUS) (CCV)


PVG39_HSVI1
HYPOTHETICAL GENE 38 PROTEIN
ICTALURID HERPESVIRUS 1
 84-118




(CHANNEL CATFISH VIRUS) (CCV)


PVG3_SPV1R
HYPOTHETICAL GENE 39 PROTEIN
ICTALURID HERPESVIRUS 1
124-158
266-300




(CHANNEL CATFISH VIRUS) (CCV)


PVG3_SPV4
GENE 3 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
 8-49
162-196
203-244


PVG43_HSVI1
GENE 3 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
 6-54
 87-121


PVG45_HSVSA
HYPOTHETICAL GENE 43 PROTEIN
ICTALURID HERPESVIRUS 1
116-150
262-296
324-361
643-677




(CHANNEL CATFISH VIRUS) (CCV)


PVG46_HSVI1
HYPOTHETICAL GENE 45 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
121-162


PVG48_HSVI1
PROBABLE MAJOR GLYCOPROTEIN
ICTALURID HERPESVIRUS 1
45-86
939-
1251-




(CHANNEL CATFISH VIRUS) (CCV)

1078
1321


PVG48_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
ICTALURID HERPESVIRUS 1
169-207




(CHANNEL CATFISH VIRUS) (CCV)


PVG49_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
360-417
611-666
733-767


PVG4R_AMEPV
HYPOTHETICAL GENE 49 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 68-102


PVG4_SPV4
G4R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
 4-38


PVG51_HSVI1
GENE 4 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
 89-130


PVG51_HSVSA
HYPOTHETICAL GENE 51 MEMBRANE
ICTALURID HERPESVIRUS 1
34-73
 89-123



PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)


PVG53_HSVI1
GENE 51 GLYCOPROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
29-70
123-157
162-196


PVG54_HSVI1
HYPOTHETICAL GENE 53 PROTEIN
ICTALURID HERPESVIRUS 1
 67-127




(CHANNEL CATFISH VIRUS) (CCV)


PVG55_HSVI1
HYPOTHETICAL GENE 54 PROTEIN
ICTALURID HERPESVIRUS 1
355-396




(CHANNEL CATFISH VIRUS) (CCV)


PVG55_HSVSA
HYPOTHETICAL GENE 55 PROTEIN
ICTALURID HERPESVIRUS 1
101-135




(CHANNEL CATFISH VIRUS) (CCV)


PVG56_HSVI1
HYPOTHETICAL GENE 55 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
126-178


PVG59_HSVI1
HYPOTHETICAL GENE 56 PROTEIN
ICTALURID HERPESVIRUS 1
151-192
578-612
644-678
750-784
846-880
1111-




(CHANNEL CATFISH VIRUS) (CCV)





1145


PVG59_HSVSA
HYPOTHETICAL GENE 59 MEMBRANE
ICTALURID HERPESVIRUS 1
10-72
 89-123



PROTEIN
(CHANNEL CATFISH VIRUS) (CCV)


PVG5_SPV1R
GENE 59 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
169-209


PVG61_HSVI1
GENE 5 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
 65-103


PVG63_HSVI1
HYPOTHETICAL GENE 61 PROTEIN
ICTALURID HERPESVIRUS 1
265-299




(CHANNEL CATFISH VIRUS) (CCV)


PVG65_HSVI1
HYPOTHETICAL GENE 63 PROTEIN
ICTALURID HERPESVIRUS 1
546-584




(CHANNEL CATFISH VIRUS) (CCV)


PVG66_HSVI1
HYPOTHETICAL GENE 65 PROTEIN
ICTALURID HERPESVIRUS 1
805-839
1213-




(CHANNEL CATFISH VIRUS) (CCV)

1254


PVG67_HSVI1
HYPOTHETICAL GENE 66 PROTEIN
ICTALURID HERPESVIRUS 1
154-188
328-410




(CHANNEL CATFISH VIRUS) (CCV)


PVG68_HSVI1
HYPOTHETICAL GENE 67 PROTEIN
ICTALURID HERPESVIRUS 1
379-413
501-546
1321-
1478-




(CHANNEL CATFISH VIRUS) (CCV)


1369
1541


PVG72_HSVI1
HYPOTHETICAL GENE 68 PROTEIN
ICTALURID HERPESVIRUS 1
245-288




(CHANNEL CATFISH VIRUS) (CCV)


PVG75_HSVI1
HYPOTHETICAL GENE 72 PROTEIN
ICTALURID HERPESVIRUS 1
447-484
723-757
912-949




(CHANNEL CATFISH VIRUS) (CCV)


PVG8_SPV1R
HYPOTHETICAL GENE 75 PROTEIN
ICTALURID HERPESVIRUS 1
217-305
388-422




(CHANNEL CATFISH VIRUS) (CCV)


PVGF1_1BVB
GENE 8 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
 5-51


PVGH3_HCMVA
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
142-179
1233-
2119-
3388-
3475-
3517-
3761-




(STRAIN BEAUDETTE) (I

1267
2156
3424
3513
3556
3795


PVGL1_CVPR8
GLYCOPROTEIN H301 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)


PVGL2_CVBF
E1 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
212-257



(MATRIX GLYCOP
(STRAIN 86/137004/BRI


PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15
642-676
850-885
 993-
1263-



(SPIKE GLYCOPRO



1088
1305


PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN L9)
850-885
 993-
1263-



(SPIKE GLYCOPRO


1109
1305


PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
642-676
850-885
 993-
1263-



(SPIKE GLYCOPRO



1109
1305


PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS
642-676
850-885
 993-
1263-



(SPIKE GLYCOPRO



1109
1305


PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
642-676
850-885
 993-
1263-



(SPIKE GLYCOPRO



1109
1305


PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN VACCINE)
642-676
850-885
 993-
1263-



(SPIKE GLYCOPRO



1109
1305


PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR
HUMAN CORONAVIRUS (STRAIN 229E)
770-916
1055-



(SPIKE GLYCOPRO


1112


PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV
643-684
1001-
1270-



(SPIKE GLYCOPRO
(STRAIN WILD TYPE 4) (MHV-4)

1117
1315


PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV
591-632
 949-
1218-



(SPIKE GLYCOPRO
(STRAIN A59)

1079
1263


PVGL2_CVMJH
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV
643-684
1001-
1270-



(SPIKE GLYCOPRO
(STRAIN JHMV/VARIANT CL-2)

1117
1315


PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV
503-543
860-976
1129-



(SPIKE GLYCOPRO
(STRAIN JHM)


1174


PVGL2_CVPMI
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
 69-110
448-482
692-733
889-923
1040-
1352-



(SPIKE GLYCOPRO
CORONAVIRUS (S




1186
1389


PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
 69-110
448-482
692-733
889-923
1040-
1352-



(SPIKE GLYCOPRO
CORONAVIRUS (S




1186
1389


PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
 70-110
446-480
690-731
887-921
1038-
1350-



(SPIKE GLYCOPRO
CORONAVIRUS (S




1184
1387


PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
 69-110
446-480
690-731
887-921
1038-
1350-



(SPIKE GLYCOPRO
CORONAVIRUS (S




1184
1387


PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
224-258
468-509
665-699
816-962
1128-



(SPIKE GLYCOPRO
(STRAIN 86/137004/BRIT




1165


PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
224-258
468-509
665-699
816-962
1128-



(SPIKE GLYCOPRO
(STRAIN RM4) (PRCV)




1165


PVGL2_EBV
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
 69-110
446-480
690-731
887-921
1038-
1350-



(SPIKE GLYCOPRO
CORONAVIRUS (S




1184
1387


PVGL2_FIPV
PROBABLE MEMBRANE GLYCOPROTEIN

 68-102


PVGL2_IBV6
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS
189-245
451-485
695-736
892-926
1043-
1355-




(STRAIN 79-1146)




1189
1392


PVGL2_IBVB
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
791-905
1057-




(STRAIN 6/82)

1091


PVGL2_IBVD2
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
437-478
772-904
1056-




(STRAIN BEAUDETTE)


1090


PVGL2_IBVK
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
773-905
1057-




(STRAIN D274)

1091


PVGL2_IBVM
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
437-478
772-904
1056-




(STRAIN KB8523)


1090


PVGLB_HCMVA
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
437-478
772-904
1056-




(STRAIN M41)


1090


PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
43-88
128-162
436-484
844-878


PVGLB_HSV11
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
22-88
128-162
437-478
451-485
845-879


PVGLB_HSV1F
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
828-890


PVGLB_HSV1K
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)]
827-889


PVGLB_HSV1P
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
827-889


PVGLB_HSV23
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS
828-890




(TYPE 1/STRAIN PATTON)


PVGLB_HSV2H
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
828-890


PVGLB_HSV2S
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
828-890


PVGLB_HSV6U
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN SA8)
817-871


PVGLB_HSVB1
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
37-71
185-223




(TYPE 6/STRAIN UGANDA-1102)


PVGLB_HSVB2
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
859-913


PVGLB_HSVBC
GLYCOPROTEIN B-1 PRECURSOR
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
440-474
848-902


PVGLB_HSVE1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
863-900


PVGLB_HSVE4
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (ISOLATE HVS25A)
542-576
911-961


PVGLB_HSVEA
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
474-515
847-900


PVGLB_HSVEB
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1)
542-576
911-961


PVGLB_HSVEL
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
542-576
911-961


PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1
542-576
910-960




(STRAIN KENTUCKY D)


PVGLB_HSVSA
GLYCOPROTEIN B PRECURSOR
MAREK'S DISEASE HERPESVIRUS
390-435
649-683
787-845




(STRAIN RB-1B)


PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
240-288
406-447


PVGLB_PRVIF
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
206-260
427-475
693-734
744-778
860-894


PVGLB_VZVD
GLYCOPROTEIN GII PRECURSOR
PSEUDORABIES VIRUS
847-881




(STRAIN INDIANA-FUNKHAUSER/BECKE


PVGLC_HSV11
GLYCOPROTEIN B PRECURSOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
 92-133
596-630
809-867


PVGLC_HSV1K
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
469-510


PVGLC_HSV2
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
469-510


PVGLC_HSV23
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
442-476


PVGLC_HSVBC
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
443-477


PVGLC_HSVEB
GLYCOPROTEIN GIII PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
235-269


PVGLC_HSVMB
GLYCOPROTEIN C PRECURSOR
EQUINE HERPESVIRUS TYPE 1
182-218




(STRAIN AB4P) AND (STRAIN KEN


PVGLC_HSVMD
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS
63-97



PRECURSOR
(STRAIN BC-1)


PVGLC_HSVMG
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS
63-97



PRECURSOR
(STRAIN RB-1B)


PVGLC_HSVMM
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS
62-96



PRECURSOR
(STRAIN GA)


PVGLC_PRVIF
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS
63-97



PRECURSOR
(STRAIN MD5)


PVGLC_VZVD
GLYCOPROTEIN G111 PRECURSOR
PSEUDORABIES VIRUS
183-235




(STRAIN INDIANA-FUNKHAUSER/BECKE


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
280-321


PVGLD_HSVEA
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN SCOTT)
280-321


PVGLD_HSVEB
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
 89-123




(STRAIN AB1)


PVGLD_HSVEK
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
139-173




(STRAIN AB4P) AND (STRAIN KEN


PVGLE_HSV11
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
139-173




(STRAIN KENTUCKY A)


PVGLE_HSV2
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
111-145


PVGLF_BRSVA
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
111-159


PVGLF_BRSVC
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
146-202
504-545




(STRAIN A51908)


PVGLF_BRSVR
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
146-202
267-302
506-547




(STRAIN COPENHAGE


PVGLF_CDVO
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
146-202
267-302
506-554




(STRAIN RB94)


PVGLF_HRSV1
FUSION GLYCOPROTEIN PRECURSOR
CANINE DISTEMPER VIRUS
228-297
340-381
568-602




(STRAIN ONDERSTEPOORT)


PVGLF_HRSVA
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
116-203
267-302
506-549




(SUBGROUP B/STRAI


PVGLF_HRSVL
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
116-202
267-302
506-549




(STRAIN A2


PVGLF_HRSVR
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
116-202
267-302
506-547




(SUBGROUP A/STRAI


PVGLF_MEASE
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
116-202
267-302
506-549




(STRAIN RSS-2)


PVGLF_MEASI
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS
116-184
228-269
452-500




(STRAIN EDMONSTON) AND (STRAIN HALLE)


PVGLF_MEASY
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN IP-3-CA)
119-187
231-272
455-503


PVGLF_MUMP1
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN YAMAGATA-1)
116-184
228-269
452-500


PVGLF_MUMPM
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL-1)
20-54
103-179
235-272
447-502


PVGLF_MUMPR
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
20-54
103-179
235-272
447-502


PVGLF_MUMPS
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN RW)
20-54
103-179
235-272
447-502


PVGLF_NDVA
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL)
20-54
103-179
235-272
447-502


PVGLF_NDVB
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
117-182
231-272
426-512




(STRAIN AUSTRALIA-VICTORIA/32)


PVGLF_NDVH3
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
426-517




(STRAIN BEAUDETTE C/45)


PVGLF_NDVH4
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
117-182
231-272
426-517




(STRAIN HER/33)


PVGLF_NDVI
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
426-517




(STRAIN B1-HITCHNER/47)


PVGLF_NDVL
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
133-182
238-272
426-517




(STRAIN ITALIEN/45)


PVGLF_NDVM
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
133-182
231-272
426-517




(STRAIN LAS/46)


PVGLF_NDVQ
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
117-182
231-272
426-512




(STRAIN MIYADERA/51)


PVGLF_NDVT
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
433-512




(STRAIN QUEENSLAND/66)


PVGLF_NDVTG
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
117-182
231-272
426-517




(STRAIN TEXAS)


PVGLF_NDVU
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
426-517




(STRAIN TEXAS G.B./48)


PVGLF_PHODV
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS
122-182
231-272
426-512




(STRAIN ULSTER/67)


PVGLF_PI1HC
FUSION GLYCOPROTEIN PRECURSOR
PHOCINE DISTEMPER VIRUS
29-63
197-266
309-350
533-581


PVGLF_PI2H
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 1 VIRUS
123-174
207-267
459-503




(STRAIN C39)


PVGLF_PI2HG
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
 93-183
477-528


PVGLF_PI2HT
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
 93-183
477-528




(STRAIN GREER)


PVGLF_PI3B
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
 93-185
477-528




(STRAIN TOSHIBA)


PVGLF_PI3H4
FUSION GLYCOPROTEIN PRECURSOR
BOVINE PARAINFLUENZA 3 VIRUS
117-182
207-241
456-518


PVGLF_RINDK
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 3 VIRUS
117-182
207-241
462-532




(STRAIN NIH 47885)


PVGLF_RINDL
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS
112-180
224-265
448-493




(STRAIN KABETE O)


PVGLF_SEND5
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS
112-180
224-265
448-506




(STRAIN L)


PVGLF_SENDF
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
127-188
211-271
463-533


PVGLF_SENDH
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN FUSHIMI)
127-188
211-271
463-533


PVGLF_SENDJ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HARRIS)
127-188
218-271
463-533


PVGLF_SENDZ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HVJ)
127-188
211-271
463-533


PVGLF_SV41
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z)
127-188
211-271
463-533


PVGLF_SV5
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 41
 96-186
454-508


PVGLF_TRTV
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 5 (STRAIN W3)
103-171
241-275
451-487


PVGLG_BEFV
FUSION GLYCOPROTEIN PRECURSOR
TURKEY RHINOTRACHEITIS VIRUS (
105-161
190-224
457-498


PVGLG_BRSVC
SPIKE GLYCOPROTEIN PRECURSOR
BOVINE EPHEMERAL FEVER VIRUS
506-612


PVGLG_HRSV1
MAJOR SURFACE GLYCOPROTEIN G
BOVINE RESPIRATORY SYNCYTIAL VIRUS
30-70
104-138




(STRAIN COPENHAGE


PVGLG_HRSV2
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-81




(SUBGROUP B/STRAI


PVGLG_HRSV3
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85




(STRAIN RSB642


PVGLG_HRSV4
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85




(STRAIN RSB1734


PVGLG_HRSV5
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
 30-107




(STRAIN RSB5857)


PVGLG_HRSV6
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85




(STRAIN RSB6190)


PVGLG_HRSV7
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85




(STRAIN RSB6256)


PVGLG_HRSV8
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-85




(STRAIN RSB6614)


PVGLG_HRSVA
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-81




(SUBGROUP B/STRAI


PVGLG_HRSVL
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
30-67




(STRAIN A2)


PVGLG_HSVE4
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
25-85




(SUBGROUP A/STRAI


PVGLG_SIGMA
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
271-305


PVGLG_SYNV
SPIKE GLYCOPROTEIN PRECURSOR
SIGMA VIRUS
344-381
464-498


PVGLG_VHSV0
SPIKE GLYCOPROTEIN PRECURSOR
SONCHUS YELLOW NET VIRUS
488-523


PVGLG_VSVIG
SPIKE GLYCOPROTEIN PRECURSOR
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
363-397




(STRAIN 07-71)


PVGLH_EBV
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
476-510




(SEROTYPE INDIANA/STRAIN G


PVGLH_HCMVA
GLYCOPROTEIN GP85 PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
53-87
160-201
336-380
653-694


PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
103-137
270-311
693-741


PVGLH_HSV11
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
102-136
692-740


PVGLH_HSV1E
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
447-481


PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM)
447-481


PVGLH_HSVBC
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
357-406


PVGLH_HSVE4
GLYCOPROTEIN H PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
364-416


PVGLH_HSVEB
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
334-379
414-455


PVGLH_HSVSA
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 1
327-372
407-448




(STRAIN AB4P) AND (ISOLATE HV


PVGLH_MCMVS
GLYCOPROTEIN H PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
32-66
374-453
664-712


PVGLH_PRVKA
GLYCOPROTEIN H PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH
440-474


PVGLH_PRVN3
GLYCOPROTEIN H PRECURSOR
PSEUDORABIES VIRUS (STRAIN KAPLAN)
226-260


PVGLH_PRVRI
GLYCOPROTEIN H PRECURSOR
PSEUDORABIES VIRUS (STRAIN NIA-3)
226-260


PVGLH_VZVD
GLYCOPROTEIN H PRECURSOR
PSEUDORABIES VIRUS (STRAIN RICE)
226-260


PVGLI_HCMVA
PROBABLE GLYCOPROTEIN H PRECURSOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
455-506


PVGLM_BUNGE
IMMEDIATE EARLY GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 47-111
323-359



PRECURSOR


PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
512-567
685-737
1228-







1262


PVGLM_BUNSH
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
643-677
916-950


PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAVIRUS SNOWSHOW HARE
643-677


PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
340-374
504-563
905-939


PVGLM_HANTB
M POLYPROTEIN PRECURSOR
DUGBE VIRUS
937-989
1239-






1300


PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1)
693-727


PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
 72-106


PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
 72-106


PVGLM_INSV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN 76-118)
 72-106


PVGLM_PHV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS
1067-





1101


PVGLM_PTPV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS
 73-111


PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
PUNTA TORO PHLEBOVIRUS
149-251


PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
693-727


PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R22)
694-728


PVGLN_BEFV
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11)
693-730


PVGLP_BEV
NONSTRUCTURAL GLYCOPROTEIN
BOVINE EPHEMERAL FEVER VIRUS
377-414
513-569



GNS PRECURSO


PVGLX_PRVRI
PEPLOMER GLYCOPROTEIN PRECURSOR
BERNE VIRUS
43-82
 90-124
622-656
1128-








1236


PVGLY_JUNIN
SECRETED GLYCOPROTEIN GX
PSEUDORABIES VIRUS (STRAIN RICE)
420-461


PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN PRECURSOR
JUNIN ARENAVIRUS
301-349


PVGLY_LASSJ
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN GA391)
317-360
388-422


PVGLY_LYCVA
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN JOSIAH)
318-361
389-423


PVGLY_LYCVW
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
333-367
395-432




(STRAIN ARMSTRON


PVGLY_MOPEI
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
124-158
333-367
395-432




(STRAIN WE)


PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
MOPEIA VIRUS
316-359


PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
PICHINDE ARENAVIRUS
334-375


PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS
315-363


PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V5)
303-351
382-416


PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V7)
302-350
381-415


PVGNB_CPMV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN TRVL 11598)
303-351
382-416


PVGNM_CPMV
GENOME POLYPROTEIN B
COWPEA MOSAIC VIRUS
835-869


PVGNM_CPSMV
GENOME POLYPROTEIN M
COWPEA MOSAIC VIRUS
160-201


PVGNM_RCMV
GENOME POLYPROTEIN M
COWPEA SEVERE MOSAIC VIRUS (STRAIN DG)
192-226
758-792
874-915


PVGP8_EBV
GENOME POLYPROTEIN M
RED CLOVER MOTTLE VIRUS
837-871
912-946


PVGP_EBOV
PROBABLE MEMBRANE ANTIGEN GP85
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 94-149


PVGP_MABVM
STRUCTURAL GLYCOPROTEIN PRECURSOR
EBOLA VIRUS
280-321
334-368
469-503


PVGP_MABVP
STRUCTURAL GLYCOPROTEIN PRECURSOR
MARBURG VIRUS (STRAIN MUSOKE)
562-596


PVH02_VACCC
STRUCTURAL GLYCOPROTEIN PRECURSOR
MARBURG VIRUS (STRAIN POPP)
562-596


PVH02_VACCV
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN COPENHAGEN)
58-92


PVH02_VARV
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN WR)
58-94


PVH05_VACCC
LATE PROTEIN H2
VARIOLA VIRUS
58-92


PVH05_VACCV
PROTEIN H5
VACCINIA VIRUS (STRAIN COPENHAGEN)
118-185


PVH05_VARV
PROTEIN H5
VACCINIA VIRUS (STRAIN WR)
118-185


PVHEL_LSV
PROTEIN H5
VARIOLA VIRUS
136-203


PVHRP_VACCC
PROBABLE HELICASE
LILY SYMPTOMLESS VIRUS
126-160


PVHRP_VACCV
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
216-279


PVI03_VACCC
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
216-279


PVI03_VACCV
PROTEIN I3
VACCINIA VIRUS (STRAIN COPENHAGEN)
150-193
210-244


PVI03_VARV
PROTEIN I3
VACCINIA VIRUS (STRAIN WR)
150-193
210-244


PVI06_VACCV
PROTEIN I3
VARIOLA VIRUS
150-193
210-244


PVI06_VARV
PROTEIN I6
VACCINIA VIRUS (STRAIN WR)
58-92


PVI07_VARV
PROTEIN I6
VARIOLA VIRUS
58-92


PVI08_VACCC
PROTEIN I7
VARIOLA VIRUS
373-407


PVI08_VACCV
PUTATIVE RNA HELICASE I8
VACCINIA VIRUS (STRAIN COPENHAGEN)
548-589


PVI08_VARV
PUTATIVE RNA HELICASE I8
VACCINIA VIRUS (STRAIN WR)
548-589


PVIE1_HCMVA
PUTATIVE RNA HELICASE I8
VARIOLA VIRUS
548-589


PVIE1_HCMVT
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 78-112
171-205
368-402
416-450


PVIE1_MCMVS
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
 78-112
171-205
368-402
416-450


PVIE2_NPVOP
IMMEDIATE-EARLY PROTEIN 1
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
244-297


PVIEN_NPVAC
IMMEDIATE-EARLY PROTEIN IE-2
ORGYIA PSEUDOTSUGATA MULTICAPSID
 94-128
305-395




POLYHEDROSIS VIRUS


PVIF_CAEVC
IMMEDIATE-EARLY REGULATORY
AUTOGRAPHA CALIFORNICA NUCLEAR
277-407



PROTEIN IE-N
POLYHEDROSIS VIRUS


PVIF_FIVPE
VIRION INFECTIVITY FACTOR
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
23-92




(STRAIN CORK)


PVIF_FIVSD
VIRION INFECTIVITY FACTOR
FELINE IMMUNODEFICIENCY VIRUS
53-94




(ISOLATE PETALUMA)


PVIF_HV1A2
VIRION INFECTIVITY FACTOR
FELINE IMMUNODEFICIENCY VIRUS
32-80




(ISOLATE SAN DIEGO)


PVIF_HV1B1
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(ARV2/SF2 ISOLATE


PVIF_HV1B5
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(BH10, BRU, HXB2, PV


PVIF_HV1EL
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(BH5 ISOLATE)


PVIF_HV1JR
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(ELI ISOLATE)


PVIF_HV1MA
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(JRCSF ISOLATE)


PVIF_HV1MN
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 2-36




(MAL ISOLATE)


PVIF_HV1N5
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(MN ISOLATE)


PVIF_HV1NA
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(NEW YORK-5 ISOL


PVIF_HVIND
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(ISOLATE NIT-A)


PVIF_HV1OY
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(NDK ISOLATE)


PVIF_HV1RH
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(OYI ISOLATE)


PVIF_HV1U4
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(RF/HAT ISOLATE)


PVIF_HV1Z2
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42




(STRAIN UGANDAN


PVIF_HV1Z6
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(Z2/CDC-Z34 ISOLAT


PVIF_HV2D2
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-42
62-96




(ZAIRE 6 ISOLATE)


PVIF_HV2NZ
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
147-195




(ISOLATE D205,7)


PVIF_HV2RO
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
152-193




(ISOLATE NIH-Z)


PVIF_OMVVS
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
163-197




(ISOLATE ROD)


PVIF_SIVAI
VIRION INFECTIVITY FACTOR
OVINE LENTIVIRUS (STRAIN SA-OMVV)
 44-114


PVIF_SIVAG
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
 2-58
150-202




(AGM155 ISOLATE)


PVIF_SIVA1
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
17-58




(AGM3 ISOLATE)


PVIF_SIVAT
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
 2-36
143-187




(ISOLATE AGM/CLONE GR1


PVIF_SIVCZ
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
20-58
150-195




(TYO-1 ISOLATE)


PVIF_SIVGB
VIRION INFECTIVITY FACTOR
CHIMPANZEE IMMUNODEFICIENCY VIRUS
 1-42


PVIMP_HSV11
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
 1-39




(ISOLATE GB1)


PVIMP_HSVEB
PROBABLE INTEGRAL MEMBRANE PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 85-134


PVIMP_HSVSA
PROBABLE INTEGRAL MEMBRANE PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
148-182
335-369


PVIMP_VZVD
INTEGRAL MEMBRANE PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 80-129


PVINT_SSV1
PROBABLE INTEGRAL MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
107-151
155-189
267-301


PVJ01_VACCC
PROBABLE INTEGRASE
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 85-130
138-172


PVJ01_VACCV
PROTEIN J1
VACCINIA VIRUS (STRAIN COPENHAGEN)
22-56


PVJ01_VARV
PROTEIN J1
VACCINIA VIRUS (STRAIN WR)
22-56


PVK03_VACCC
PROTEIN J1
VARIOLA VIRUS
22-56


PVK03_VACCV
PROTEIN K3
VACCINIA VIRUS (STRAIN COPENHAGEN)
38-82


PVK07_VACCV
PROTEIN K3
VACCINIA VIRUS (STRAIN WR)
38-82


PVL02_VACCC
PROTEIN K7
VACCINIA VIRUS
115-149




(STRAIN WR), AND (STRAIN COPENHAGEN)


PVL02_VACCV
PROTEIN L2
VACCINIA VIRUS (STRAIN COPENHAGEN)
47-81


PVL02_VARV
PROTEIN L2
VACCINIA VIRUS (STRAIN WR)
47-92


PVL1_CRPVK
PROTEIN L2
VARIOLA VIRUS
47-81


PVL1_FPVL
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE)
261-295
331-383




PAPILLOMAVIRUS (STRAIN KANS


PVL1_HPV05
PROBABLE L1 PROTEIN
AVIAN PAPILLOMAVIRUS FPV-L
38-90


PVL1_HPV08
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
355-393


PVL1_HPV1A
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
354-392


PVL1_HPV47
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
345-379


PVL1_PAPVD
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
353-391


PVL1_REOVD
PROBABLE L1 PROTEIN
DEER PAPILLOMAVIRUS
23-57


PVL2_HPV05
MAJOR CORE PROTEIN LAMBDA 1
REOVIRUS (TYPE 3/STRAIN DEARING)
 94-142
437-471


PVL2_HPV08
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE
341-375


PVL2_HPV16
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
354-392


PVL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
295-333


PVL2_HPV31
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
345-379


PVL2_HPV35
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
288-326


PVL2_HPV47
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
292-333


PVL2_HPV58
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
341-375


PVL2_HPV5B
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
293-327


PVL3_REOVD
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
341-375


PVL3_REOVJ
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 3/STRAIN DEARING)
107-148
1112-






1178


PVL3_REOVL
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 2/STRAIN D5/JONES)
1112-





1178


PVL96_IRV1
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 1/STRAIN LANG)
107-148
331-365
1112-







1178


PVM01_VACCC
L96 PROTEIN
TIPULA IRIDESCENT VIRUS
146-180
198-236


PVM1_REOVL
PROTEIN M1
VACCINIA VIRUS (STRAIN COPENHAGEN)
 5-56


PVM21_REOVD
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
287-321



PROTEIN MU-2


PVM22_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
416-450
619-663



PROTEIN MU-1/MU-1C


PVM2_REOVJ
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
416-450
618-662



PROTEIN MU-1/MU-1C


PVM2_REOVL
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 2/STRAIN D5/JONES)
416-450
618-662



PROTEIN MU-1/MU-1C


PVM3_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
416-450
618-662



PROTEIN MU-1/MU-1C


PVMA2_BRSVA
MAJOR NONSTRUCTURAL PROTEIN MU-NS
REOVIRUS (TYPE 3/STRAIN DEARING)
135-190
337-371
523-558
618-690


PVMA2_HRSVA
MATRIX GLYCOPROTEIN M2
BOVINE RESPIRATORY SYNCYTIAL VIRUS
42-90




(STRAIN A51908)


PVMA2_TRTV
MATRIX GLYCOPROTEIN M2
HUMAN RESPIRATORY SYNCYTIAL VIRUS
42-90




(STRAIN A2)


PVMAT_CDVO
MATRIX GLYCOPROTEIN M2
TURKEY RHINOTRACHEITIS VIRUS
36-70


PVMAT_INCJJ
MATRIX PROTEIN
CANINE DISTEMPER VIRUS
193-234




(STRAIN ONDERSTEPOORT)


PVMAT_NDVA
MATRIX (M) PROTEIN
INFLUENZA C VIRUS (STRAIN C/JJ/50)
 73-114
151-208


PVMAT_NDVB
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS
310-358




(STRAIN AUSTRALIA-VICTORIA/32)


PVMAT_PI3B
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS
324-358




(STRAIN BEAUDETTE C/45)


PVMAT_PI3H4
MATRIX PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
 99-133
204-252


PVMAT_RABVA
MATRIX PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
 99-133
204-252




(STRAIN NIH 47885)


PVMAT_RABVC
MATRIX PROTEIN
RABIES VIRUS (STRAIN AVO1)
 69-103


PVMAT_RABVE
MATRIX PROTEIN
RABIES VIRUS (STRAIN CVS-11)
 69-103


PVMAT_RABVN
MATRIX PROTEIN
RABIES VIRUS (STRAIN ERA)
 69-103


PVMAT_RABVP
MATRIX PROTEIN
RABIES VIRUS (STRAIN NISHIGAHARA RCEH)
 69-103


PVMAT_RABVS
MATRIX PROTEIN
RABIES VIRUS (STRAIN PV)
 69-103


PVMAT_SYNV
MATRIX PROTEIN
RABIES VIRUS (STRAIN SAD B19)
 69-103


PVMAT_VSVIG
MATRIX PROTEIN
SONCHUS YELLOW NET VIRUS
246-280


PVME1_CVBM
MATRIX PROTEIN
VESICULAR STOMATITIS VIRUS
198-232




(SEROTYPE INDIANA/STRAIN G


PVME1_CVPFS
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
175-209


PVME1_CVPPU
E1 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
 98-146
212-257




CORONAVIRUS (S


PVME1_CVPRM
E1 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
212-257




CORONAVIRUS (S


PVME1—CVTKE
E1 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
212-257




(STRAIN RM4)


PVME1_FIPV
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS
28-62
175-209


PVME1_IBV6
E1 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS
212-257




(STRAIN 79-1146)


PVME1_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-55
177-218




(STRAIN 6/82)


PVME1_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-55
177-218




(STRAIN BEAUDETTE)


PVME1_IBVK
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-55
177-218




(STRAIN BEAUDETTE M4


PVMEM_EBV
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
177-218




(STRAIN KB8523)


PVMP_CAMVC
PROBABLE MEMBRANE PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
36-94


PVMP_CAMVD
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324




(STRAIN CM-1841)


PVMP_CAMVE
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324




(STRAIN D/H)


PVMP_CAMVN
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324




(STRAIN BBC)


PVMP_CAMVS
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324




(STRAIN NY8153)


PVMP_CAMVW
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324




(STRAIN STRASBOURG)


PVMP_CERV
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
187-254
270-324




(STRAIN W260)


PVMP_FMVD
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS
212-246


PVMP_SOCMV
MOVEMENT PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
217-251


PVMSA_HPBDB
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
 76-118


PVMSA_HPBDC
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
272-313
324-361




(BROWN SHANGHAI DUCK ISOLATE S


PVMSA_HPBDU
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
271-312
323-360




(STRAIN CHINA)


PVMSA_HPBDW
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
234-275
289-323


PVMSA_HPBGS
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
272-313
324-361




(WHITE SHANGHAI DUCK ISOLATE S3


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN PRECURSOR
GROUND SQUIRREL HEPATITIS VIRUS
210-244


PVMSA_WHV1
MAJOR SURFACE ANTIGEN PRECURSOR
HERON HEPATITIS B VIRUS
294-328


PVMSA_WHV59
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 1
208-242


PVMSA_WHV7
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 59
213-247


PVMSA_WHV81
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 7
213-247


PVMT1_DHVI1
PROBABLE MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
213-247



PRECURSOR
(INFECTIOUS CLONE)


PVMT1_IAANN
MATRIX PROTEIN 1
DHORI VIRUS (STRAIN INDIAN/1313/61)
201-235


PVMT1_IABAN
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/ANN ARBOR/6/60)


PVMT1_IACAO
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/BANGKOK/1/79)


PVMT1_IAFOW
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
31-79




(STRAIN A/CAMEL/MONGOLIA/82)


PVMT1_IAFPR
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/FORT WARREN/1/50), AND (STR


PVMT1_IAFPW
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK


PVMT1_IALE1
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/FOWL PLAGUE VIRUS/WEYBRID


PVMT1_IALE2
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/LENINGRAD/134/57)


PVMT1_IAMAN
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/LENINGRAD/134/17/57)


PVMT1_IAPOC
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/MALLARD/NEW YORK/6750/78)


PVMT1_IAPUE
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/PORT CHALMERS/1/73)


PVMT1_IAUDO
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/PUERTO RICO/8/34)


PVMT1_IAW1L
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/UDORN/307/72)


PVMT1_IAZI1
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/WILSON-SMITH/33


PVMT1_INBAC
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS
 92-126
174-222




(STRAIN A/SWINE/IOWA/15/30


PVMT1_INBAD
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS
175-209




(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE


PVMT1_INBLE
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS
175-209




(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])


PVMT1_INBSI
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS
175-209




(STRAIN B/LEE/40)


PVMT2_INBAC
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS
175-209




(STRAIN B/SINGAPORE/222/79)


PVMT2_INBAD
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS
132-184




(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE


PVMT2_INBLE
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS
132-184




(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])


PVMT2_INBSI
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS
132-184




(STRAIN B/LEE/40)


PVMT8_MYXVL
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS
132-184




(STRAIN B/SINGAPORE/222/79)


PVN01_VACCC
M-T8 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
46-80
145-197


PVN01_VACCV
PROTEIN N1
VACCINIA VIRUS (STRAIN COPENHAGEN)
 64-112


PVN34_ROTBS
PROTEIN N1
VACCINIA VIRUS (STRAIN WR)
 64-112


PVN34_ROTPC
NONSTRUCTURAL PROTEIN NS34
BOVINE ROTAVIRUS
 64-169




(GROUP C/STRAIN SHINTOKU)


PVNCA_AAV2
NONSTRUCTURAL PROTEIN NS34
PORCINE ROTAVIRUS
 64-117
121-169




(GROUP C/STRAIN COWDEN)


PVNCA_RSV
DNA REPLICATION PROTEIN
ADENO-ASSOCIATED VIRUS 2
 91-125
217-251


PVNCN_PAVBO
MAJOR NONCAPSID PROTEIN
RICE STRIPE VIRUS
129-163


PVNCS_ADVG
PROBABLE NONCAPSID PROTEIN NP1
BOVINE PARVOVIRUS
221-255


PVNCS_AEDEV
NONCAPSID PROTEIN NS-1
ALEUTIAN MINK DISEASE PARVOVIRUS
19-60
270-304




(STRAIN G)


PVNCS_FPV19
NONCAPSID PROTEIN NS-1
AEDES DENSONUCLEOSIS VIRUS
276-339
521-571
585-640
715-760
780-849




(STRAIN GKV 002 002)


PVNCS_MEVA
NONCAPSID PROTEIN NS-1
FELINE PANLEUKOPENIA VIRUS
53-98




(STRAIN 193)


PVNCS_MUMIM
NONCAPSID PROTEIN NS-1
MINK ENTERITIS VIRUS
53-98




(STRAIN ABASHIRI)


PVNCS_MUMIV
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS (STRAIN MVMI)
35-91
261-297


PVNCS_PAVBO
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS
35-87
259-297


PVNCS_PAVCN
PROBABLE NONCAPSID PROTEIN NS1
BOVINE PARVOVIRUS
181-222


PVNCS_PAVHB
NONCAPSID PROTEIN NS-1
CANINE PARVOVIRUS (STRAIN N)
53-98


PVNCS_PAVHH
NONCAPSID PROTEIN NS-1
HUMAN PARVOVIRUS B19
236-270


PVNCS_PAVPN
NONCAPSID PROTEIN NS-1
HAMSTER PARVOVIRUS H1
35-76
259-297


PVNS1_BTV10
NONCAPSID PROTEIN NS-1
PORCINE PARVOVIRUS (STRAIN NADL-2)
24-77
169-210
309-346


PVNS1_BTV17
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141




(SEROTYPE 10/ISOLATE USA)


PVNS1_BTV1A
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141




(SEROTYPE 17/ISOLATE USA)


PVNS1_BTV1S
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141




(SEROTYPE 1/ISOLATE AUSTRALIA)


PVNS1_BTV20
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141




(SEROTYPE 1/ISOLATE SOUTH AFRICA)


PVNS1_EHDV2
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS
107-141




(SEROTYPE 20/ISOLATE AUSTRALIA)


PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
401-454




(SEROTYPE 2/STRAI


PVNS1_IACAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/ANN ARBOR/6/60)


PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
37-71




(STRAIN A/CAMEL/MONGOLIA/82


PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/CHICKEN/GERMANY/N/49)


PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80




(STRAIN A/CHICKEN/JAPAN/24)


PVNS1_IADE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/DUCK/ALBERTA/60/76)


PVNS1_IADU3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80




(STRAIN A/DUCK/ENGLAND/1/56)


PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80




(STRAIN A/DUCK/UKRAINE/1/63)


PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/FORT MONMOUTH/1/47)


PVNS1_IAFPR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/FORT WARREN/1/50, AND (STRA


PVNS1_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK


PVNS1_IALEN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/LENINGRAD/134/57)


PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/LENINGRAD/54/1)


PVNS1_IAMAN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/MALLARD/ALBERTA/88/76


PVNS1_IAMAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/MALLARD/NEW YORK/6750/78)


PVNS1_IAMYN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/MALLARD/NEW YORK/6874/78


PVNS1_IAPI0
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80




(STRAIN A/MYNAH/HANEDA-THAI/76)


PVNS1_IAPI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/PINTAIL/ALBERTA/119/79


PVNS1_IAPI2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/PINTAIL/ALBERTA/121/79)


PVNS1_IAPI3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/PINTAIL/ALBERTA/268/78


PVNS1_IAPUE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/PINTAIL/ALBERTA/358/79)


PVNS1_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/PUERTO RICO/8/34)


PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/TURKEY/BETHLEHEM-GLILIT/14


PVNS1_IATKR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/TURKEY/CANADA/63)


PVNS1_IATRS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/TURKEY/OREGON/71)


PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
46-80




(STRAIN A/TERN/SOUTH AFRICA/61


PVNS1_IAZI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/TERN/TURKMENIA/18/72)


PVNS1_INBAC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
49-83




(STRAIN A/SWINE/IOWA/15/30)


PVNS1_INBGA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/ANN ARBOR/1/66[COLD-ADAPTE


PVNS1_INBHK
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/GA/86)


PVNS1_INBHT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/HONG KONG/8/73), AND (STRAIN


PVNS1_INBID
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/HT/84)


PVNS1_INBLE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/ID/86)


PVNS1_INBMD
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/LEE/40)


PVNS1_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/MARYLAND/59)


PVNS1_INBRU
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177
277-337




(STRAIN B/PA/79)


PVNS1_INBSI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
139-173




(STRAIN B/RU/69)


PVNS1_INBSJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/SINGAPORE/222/79)


PVNS1_INBVJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/SINGAPORE/64)


PVNS1_INBYA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/VICTORIA/87)


PVNS2_AHSV9
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS
143-177




(STRAIN B/YAMAGATA/1/73)


PVNS2_BTV17
NONSTRUCTURAL PROTEIN NS2
AFRICAN HORSE SICKNESS VIRUS
 67-101




(SEROTYPE 9)


PVNS2_BTV1X
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS
203-237




(SEROTYPE 17/ISOLATE USA)


PVNS2_CVMJH
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS (SEROTYPE 10)
203-237


PVNS2_EHDV2
NONSTRUCTURAL PROTEIN NS2
MURINE CORONAVIRUS MHV (STRAIN JHM)
 71-105


PVNS2_IAALA
NONSTRUCTURAL PROTEIN NS2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
206-272
276-311




(SEROTYPE 2/STRAI


PVNS2_IAANA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/ALASKA/6/77), AND (STRAIN A/U


PVNS2_IAANN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/ANAS ACUTA/PRIMORJE/695/76)


PVNS2_IACHI
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/ANN ARBOR/6/60), AND (STRAIN


PVNS2_IACKG
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/CHILE/1/83)


PVNS2_IACKJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79




(STRAIN A/CHICKEN/GERMANY/N/49)


PVNS2_IADA2
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-90




(STRAIN A/CHICKEN/JAPAN/24)


PVNS2_IADE1
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79




(STRAIN A/DUCK/ALBERTA/60/76)


PVNS2_IADU3
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-90




(STRAIN A/DUCK/ENGLAND/1/56)


PVNS2_IAFOM
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-90




(STRAIN A/DUCK/UKRAINE/1/63)


PVNS2_IAFOW
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/FORT MONMOUTH/1/47)


PVNS2_IAFPR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/FORT WARREN/1/50)


PVNS2_IALE2
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK


PVNS2_IALEN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/LENINGRAD/134/17/57)


PVNS2_IAMA6
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/LENINGRAD/54/1)


PVNS2_IAMA8
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79




(STRAIN A/MALLARD/ALBERTA/88/76)


PVNS2_IAMAN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79




(STRAIN A/MALLARD/ALBERTA/827/78)


PVNS2_IAMAO
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/MALLARD/NEW YORK/6750/78)


PVNS2_IAMYN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/MALLARD/NEW YORK/6874/78)


PVNS2_IAPI0
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-90




(STRAIN A/MYNAH/HANEDA-THAI/76)


PVNS2_IAPI1
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/PINTAIL/ALBERTA/119/79)


PVNS2_IAPI2
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79




(STRAIN A/PINTAIL/ALBERTA/121/79)


PVNS2_IAPUE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/PINTAIL/ALBERTA/268/78)


PVNS2_IATKB
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/PUERTO RICO/8/34)


PVNS2_IATKR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79




(STRAIN A/TURKEY/BETHLEHEM-GLILIT/14


PVNS2_IATRS
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-79




(STRAIN A/TURKEY/OREGON/71


PVNS2_IAUSS
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
11-52




(STRAIN A/TERN/SOUTH AFRICA/61)


PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS
14-93




(STRAIN A/USSR/90/77)


PVNS2_INBYA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS
 2-43
 59-119




(STRAIN B/LEE/40


PVNS2_INCJJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS
 2-43
 59-119




(STRAIN B/YAMAGATA/1/73)


PVNS2_PVM
NONSTRUCTURAL PROTEIN NS2
INFLUENZA C VIRUS
57-98




(STRAIN C/JJ/50)


PVNS3_AHSV3
NONSTRUCTURAL PROTEIN 2
PNEUMONIA VIRUS OF MICE
 70-104


PVNS3_AHSV9
NONSTRUCTURAL PROTEIN NS3
AFRICAN HORSE SICKNESS VIRUS
44-78
166-215




(SEROTYPE 3)


PVNS3_BRD
NONSTRUCTURAL PROTEIN NS3
AFRICAN HORSE SICKNESS VIRUS
37-78
 88-122
166-215




(SEROTYPE 9)


PVNS3_CVPFS
NONSTRUCTURAL PROTEIN NS3
BROADHAVEN VIRUS
26-98
102-147


PVNS4_CVH22
NONSTRUCTURAL PROTEIN 3-1
PORCINE TRANSMISSIBLE GASTROENTERITIS
13-51




CORONAVIRUS (S


PVNS4_RSV
NONSTRUCTURAL PROTEIN 4
HUMAN CORONAVIRUS (STRAIN 229E)
11-52


PVNS7_CVCAE
NONSTRUCTURAL PROTEIN NS4
RICE STRIPE VIRUS
 2-40


PVNS7_CVFE3
NONSTRUCTURAL PROTEIN 7
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
11-47


PVNS7_FIPV
NONSTRUCTURAL PROTEIN 7
FELINE ENTERIC CORONAVIRUS (STRAIN 79-1683)
 1-42


PVNSC_CDVO
NONSTRUCTURAL PROTEIN 7
FELINE INFECTIOUS PERITONITIS VIRUS
 1-42




(STRAIN 79-1146)


PVNSC_MEASE
NONSTRUCTURAL PROTEIN C
CANINE DISTEMPER VIRUS
50-84
 95-152




(STRAIN ONDERSTEPOORT)


PVNSC_MEASI
NONSTRUCTURAL PROTEIN C
MEASLES VIRUS (STRAIN EDMONSTON)
43-84


PVNSC_MEASY
NONSTRUCTURAL PROTEIN C
MEASLES VIRUS (STRAIN IP-3-CA)
43-84


PVNSC_PI1HB
NONSTRUCTURAL PROTEIN C
MEASLES VIRUS (STRAIN YAMAGATA-1)
43-84


PVNSC_PI1HC
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
133-167




(STRAIN C35)


PVNSC_PI1HD
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
133-167




(STRAIN C39)


PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
133-167




(STRAIN C1-5/73)


PVNSC_PI3H4
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
40-75
133-167




(STRAIN C1-14/83)


PVNSC_SEND6
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 3 VIRUS
 58-133
161-199




(STRAIN NIH 47885)


PVNSC_SENDH
NONSTRUCTURAL PROTEIN C
SENDAI VIRUS (STRAIN 6/94)
133-167


PVNSC_SENDZ
NONSTRUCTURAL PROTEIN C
SENDAI VIRUS (STRAIN HARRIS)
133-167


PVNSM_INSV
NONSTRUCTURAL PROTEIN C
SENDAI VIRUS (STRAIN Z)
133-167


PVNST_BUNGE
NONSTRUCTURAL PROTEIN NS-M
IMPATIENS NECROTIC SPOT VIRUS (INSV)
 44-102
262-296


PVNST_BUNL7
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS GERMISTON
34-75


PVNST_BUNLC
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS LA CROSSE (ISOLATE L74)
 5-39


PVNST_MAGV
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS LA CROSSE
 5-39


PVNST_TOSV
NONSTRUCTURAL PROTEIN NS-S
MAGUARI VIRUS
35-69


PVNST_UUK
NONSTRUCTURAL PROTEIN NS-S
TOSCANA VIRUS (TOS)
144-183


PVNUA_PRVKA
NONSTRUCTURAL PROTEIN NS-S
UUKUNIEMI VIRUS (UUK)
139-173


PVNUC_DHVI1
PROBABLE NUCLEAR ANTIGEN
PSEUDORABIES VIRUS (STRAIN KAPLAN) (PRV)
1134-





1175


PVNUC_EBOV
NUCLEOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/61) (DHO)
209-243


PVNUC_IAANA
NUCLEOPROTEIN
EBOLA VIRUS
191-225
227-261
329-369


PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/ANAS ACUTA/PRIMORJE/695/76)


PVNUC_IABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-408




(STRAIN A/ANN ARBOR/6/60)


PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-408




(STRAIN A/BRAZIL/11/78)


PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)


PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/CALIFORNIA/10/78)


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/CHICKEN/GERMANY/N/49)


PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/CHICKEN/PENNSYLVANIA/1/83)


PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/DUCK/AUSTRALIA/749/80)


PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/DUCK/BEIJING/1/78)


PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
360-408




(STRAIN A/DUCK/CZECHOSLOVAKIA/56)


PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/DUCK/ENGLAND/1/56)


PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/DUCK/ENGLAND/1/62)


PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/DUCK/HONG KONG/7/75)


PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/DUCK/MEMPHIS/928/74


PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/DUCK/MANITOBA/1/53)


PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/DUCK/NEW ZEALAND/31/76)


PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS
 96-154
357-408




(STRAIN A/DUCK/UKRAINE/2/60)


PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/ENGLAND/19/55)


PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/FORT MONMOUTH/1/47)


PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS
357-408




(STRAIN A/FORT WARREN/1/50)


PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/FOWL PLAGUE VIRUS/DOBSONA


PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
360-408




(STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK


PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
113-154
357-408




(STRAIN A/GREY TEAL/AUSTRALIA/2/79)


PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-408




(STRAIN A/GULL/MARYLAND/5/77)


PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS
 96-154
357-409




(STRAIN A/GULL/MARYLAND/704/77)


PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-409




(STRAIN A/GULL/MARYLAND/1824/78)


PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-409




(STRAIN A/GULL/MARYLAND/1815/79)


PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-409




(STRAIN A/GULL/ASTRAKHAN/227/84)


PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-409




(STRAIN A/GULL/MASSACHUSETTS/26/80)


PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-409




(STRAIN A/GULL/MINNESOTA/945/80)


PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/HICKOX/40)


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/EQUINE/JILLIN/1/89)


PVNUC_IAHMI
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/EQUINE/LONDON/1416/73)


PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154




(STRAIN A/EQUINE/MIAMI/1/63)


PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/HONG KONG/1/68)


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/HONG/KONG/5/83)


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS
 96-154
357-408




(STRAIN A/EQUINE/PRAGUE/1/56)


PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408


PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/KIEV/59/79)


PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/LENINGRAD/54/1)


PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408


PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/MALLARD/NEW YORK/6750/78)


PVNUC_IANEJ
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/MINK/SWEDEN/84)


PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/NEW JERSEY/8/76)


PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/NT/60/68)


PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/OHIO/4/83)


PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/PARROT/ULSTER/73)


PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/PUERTO RICO/8/34)


PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/RUDDY TURNSTONE/NEW JERSE


PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SEAL/MASSACHUSETTS/1/80)


PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-408




(STRAIN A/SHEARWATER/AUSTRALIA/72)


PVNUC_IATEI
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/SINGAPORE/1/57)


PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/TEAL/ICELAND/29/80)


PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/TURKEY/MINNESOTA/1661/81)


PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/TURKEY/ONTARIO/7732/66)


PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
360-408




(STRAIN A/TERN/SOUTH AFRICA/61)


PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-405




(STRAIN A/TERN/TURKMENIA/18/72)


PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/TEXAS/1/77)


PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/UDORN/307/72)


PVNUC_IAV16
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-408




(STRAIN A/USSR/90/77)


PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS
357-408




(STRAIN A/VICTORIA/5/68)


PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-409




(STRAIN A/WHALE/MAINE/328/84)


PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/WHALE/PACIFIC OCEAN/19/76)


PVNUC_IAWIS
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/WILSON-SMITH/33)


PVNUC_IAZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/WISCONSIN/3523/88)


PVNUC_IAZ41
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/29/37)


PVNUC_IAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/41/49)


PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/SWINE/CAMBRIDGE/1/35)


PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/SWINE/DANDONG/9/83)


PVNUC_IAZH1
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/GERMANY/2/81)


PVNUC_IAZH3
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
357-409




(STRAIN A/SWINE/HONG KONG/6/76)


PVNUC_IAZH4
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/HONG KONG/126/82)


PVNUC_IAZI1
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/HONG KONG/127/82)


PVNUC_IAZI2
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/IOWA/15/30)


PVNUC_IAZI3
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/IOWA/1976/31)


PVNUC_IAZJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/IOWA/46)


PVNUC_IAZJ2
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/ITALY/437/76)


PVNUC_IAZJ3
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/ITALY/2/79)


PVNUC_IAZJ4
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/ITALY/141/81)


PVNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/ITALY/839/89)


PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/JAMESBURG/42)


PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/MAY/54)


PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/NETHERLANDS/12/85)


PVNUC_IAZON
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/OHIO/23/35)


PVNUC_IAZTE
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/ONTARIO/2/81)


PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/TENNESSEE/24/77)


PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/WISCONSIN/1/57)


PVNUC_INBAA
NUCLEOPROTEIN
INFLUENZA A VIRUS
 1-42
 96-154
357-408




(STRAIN A/SWINE/WISCONSIN/1/61)


PVNUC_INBAC
NUCLEOPROTEIN
INFLUENZA B VIRUS
 75-142
480-514




(STRAIN B/ANN ARBOR/1/86)


PVNUC_INBAD
NUCLEOPROTEIN
INFLUENZA B VIRUS
 75-142
480-514




(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTE


PVNUC_INBLE
NUCLEOPROTEIN
INFLUENZA B VIRUS
 75-145
480-514




(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])


PVNUC_INBSI
NUCLEOPROTEIN
INFLUENZA B VIRUS
 75-146
480-514




(STRAIN B/LEE/40)


PVNUC_INCCA
NUCLEOPROTEIN
INFLUENZA B VIRUS
 75-142
480-514




(STRAIN B/SINGAPORE/222/79)


PVNUC_MABVM
NUCLEOPROTEIN
INFLUENZA C VIRUS
 92-203
406-447




(STRAIN C/CALIFORNIA/78)


PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
173-207
322-407


PVO01_VACCC
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
173-207
322-407


PVO01_VARV
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
102-145
245-279
341-382
581-615


PVOR1_FXMV
PROTEIN O1
VARIOLA VIRUS
102-145
245-279
341-382
581-615


PVOR1_NMV
152 KD PROTEIN
FOXTAIL MOSAIC VIRUS
293-327


PVOR1_PMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS (NMV)
1519-





1575


PVOR1_PVMR
176 KD PROTEIN
PAPAYA MOSAIC POTEXVIRUS (PMV)
 1-39
299-337
1474-







1532


PVOR1_PVX
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN) (PVM)
597-638
682-759


PVOR1_PVXCP
165 KD PROTEIN
POTATO VIRUS X (PVX)
516-550


PVOR1_SMYEA
165 KD PROTEIN
POTATO VIRUS X (STRAIN CP) (PVX)
510-547


PVOR1_WCMVM
150 KD PROTEIN
STRAWBERRY MILD YELLOW EDGE-
308-342
931-965




ASSOCIATED VIRUS (SMYE


PVOR1_WCMVO
147 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS
1240-




(STRAIN M) (WCMV)
1289


PVP10_NPVAC
147 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS
1240-




(STRAIN O) (WCMV)
1289


PVP10_NPVOP
P10 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
 7-41




POLYHEDROSIS VIRUS (


PVP10_RBSDV
P10 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
 7-50




POLYHEDROSIS VIRUS


PVP10_RGDV
PROTEIN S10
RICE BLACK STREAKED DWARF VIRUS
339-382
395-429
506-556




(RBSDV)


PVP10_WTV
NONSTRUCTURAL PROTEIN PNS10
RICE GALL DWARF VIRUS (RGDV)
186-273


PVP11_RDV
NONSTRUCTURAL PROTEIN PNS10
WOUND TUMOR VIRUS (WTV)
220-254


PVP11_WTV
NONSTRUCTURAL PROTEIN PNS11
RICE DWARF VIRUS (RDV)
25-80
273-314


PVP12_RDV
NONSTRUCTURAL PROTEIN PNS11
WOUND TUMOR VIRUS (WTV)
16-74


PVP12_WTV
NONSTRUCTURAL PROTEIN P11
RICE DWARF VIRUS (RDV))
140-181


PVP18_WTVNJ
NONSTRUCTURAL PROTEIN PNS12
WOUND TUMOR VIRUS (WTV)
 68-108


PVP19_HSVEB
NONSTRUCTURAL PROTEIN PNS12
WOUND TUMOR VIRUS (STRAIN NJ)
 68-108




(WTV)


PVP23_HCMVA
CAPSID ASSEMBLY AND DNA MATURATION
EQUINE HERPESVIRUS TYPE 1
189-231



PROTE
(STRAIN AB4P) (EHV-1)


PVP23_HSV6U
PROBABLE CAPSID PROTEIN VP23
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
41-82
146-180


PVP24_EBOV
PROBABLE CAPSID PROTEIN VP23
HERPES SIMPLEX VIRUS
47-81




(TYPE 6/STRAIN UGANDA-1102)


PVP26_HSVEB
MEMBRANE-ASSOCIATED STRUCTURAL
EBOLA VIRUS
166-200



PROTEIN V


PVP26_HSVSA
CAPSID PROTEIN VP26
EQUINE HERPESVIRUS TYPE 1
36-77




(STRAIN AB4P) (EHV-1)


PVP26_NPVOP
CAPSID PROTEIN VP26
HERPESVIRUS SAIMIRI (STRAIN 11)
41-78


PVP26_VZVD
P26 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
118-159




POLYHEDROSIS VIRUS


PVP2_AHSV4
CAPSID PROTEIN VP26
VARICELLA-ZOSTER VIRUS
47-81




(STRAIN DUMAS) (VZV)


PVP2_BTV10
OUTER CAPSID PROTEIN VP2
AFRICAN HORSE SICKNESS VIRUS
136-188
270-304
410-465
614-662
684-720
 976-




(SEROTYPE 4/STRAIN VACCI





1056


PVP2_BTV11
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS
168-225




(SEROTYPE 10/ISOLATE USA)


PVP2_BTV17
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS
 77-111
559-593




(SEROTYPE 11/ISOLATE USA)


PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS
 77-111
168-209




(SEROTYPE 17/ISOLATE USA)


PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS
119-153
576-610
668-702




(SEROTYPE 1/ISOLATE SOUTH AFRICA)


PVP2_ROTBR
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
 72-106
247-301
405-453
461-495
895-929




(SEROTYPE 1) (EHDV


PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
 2-94
482-516
523-557
607-655
675-754


PVP2_ROTHW
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
 2-94
483-517
524-558
608-656
676-755


PVP2_ROTPC
RNA-BINDING PROTEIN VP2
HUMAN ROTAVIRUS
17-97
492-526
533-567
617-658
685-764




(SEROTYPE 1/STRAIN WA)


PVP2_ROTS1
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS
 1-50
52-99
194-228
515-551
599-643
705-746




(GROUP C/STRAIN COWDEN)


PVP30_ASFE7
RNA-BINDING PROTEIN VP2
SIMIAN 11 ROTAVIRUS
36-96
483-517
608-656
680-755




(STRAIN SA11)


PVP31_FRG3V
PHOSPHOPROTEIN P30
AFRICAN SWINE FEVER VIRUS
29-89




(STRAIN E-75) (ASFV)


PVP32_ASFB7
EARLY 31 KD PROTEIN
FROG VIRUS 3 (FV3)
227-261


PVP35_EBOV
PHOSPHOPROTEIN P32
AFRICAN SWINE FEVER VIRUS
29-89




(STRAIN BA71V) (ASFV)


PVP35_NPVAC
POLYMERASE COMPLEX PROTEIN VP35
EBOLA VIRUS
 80-119


PVP35_NPVBM
EARLY 35 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
 54-102




POLYHEDROSIS VIRUS


PVP35_VACCC
EARLY 35 KD PROTEIN
BOMBYX MORI NUCLEAR POLYHEDROSIS
 54-102
224-258




VIRUS (BMNPV)


PVP35_VACCP
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN COPENHAGEN)
140-181



PROTEIN P35


PVP35_VACCV
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN L-IVP)
17-51



PROTEIN P35


PVP35_VARV
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN WR)
140-181



PROTEIN P35


PVP3_AHSV4
IMMUNODOMINANT ENVELOPE
VARIOLA VIRUS
141-182



PROTEIN P35


PVP3_BTV10
VP3 CORE PROTEIN
AFRICAN HORSE SICKNESS VIRUS
173-214
240-274
667-704




(SEROTYPE 4/STRAIN VACCI


PVP3_BTV17
VP3 CORE PROTEIN
BLUETONGUE VIRUS
214-255
853-894




(SEROTYPE 10/ISOLATE USA)


PVP3_BTV1A
VP3 CORE PROTEIN
BLUETONGUE VIRUS
214-255
853-894




(SEROTYPE 17/ISOLATE USA)


PVP3_EHDV1
VP3 CORE PROTEIN
BLUETONGUE VIRUS
214-255
853-894




(SEROTYPE 1/ISOLATE AUSTRALIA)


PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
208-246
798-832
851-892




(SEROTYPE 1) (EHDV


PVP3_GFLV
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
208-246
735-770
798-832
851-892


PVP3_RDV
P3 PROTEIN
GRAPEVINE FANLEAF VIRUS (GFLV)
 96-133


PVP3_ROTPC
MAJOR 114 KD STRUCTURAL PROTEIN
RICE DWARF VIRUS (RDV)
299-337
817-872


PVP3_ROTS1
INNER CORE PROTEIN VP3
PORCINE ROTAVIRUS
24-58
229-263
329-395
406-446
640-688




(GROUP C/STRAIN COWDEN)


PVP40_EBV
INNER CORE PROTEIN VP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
26-76
244-278
331-365
415-492
662-696


PVP40_HSV11
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS
433-467




(STRAIN B95-8) (HUMAN HERPESVIRUS 4)


PVP40_HSVEB
CAPSID PROTEIN P40
HERPES SIMPLEX VIRUS
206-257
599-633




(TYPE 1/STRAIN 17)


PVP40_ILTVT
CAPSID PROTEIN P40
EQUINE HERPESVIRUS TYPE 1
180-245




(STRAIN AB4P) (EHV-1)


PVP40_SCMVC
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS
 1-35
509-557




(STRAIN THORNE V88


PVP40_VZVD
CAPSID PROTEIN P40
SIMIAN CYTOMEGALOVIRUS
457-498




(STRAIN COLBURN)


PVP41_NPVAC
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS
167-246
486-522




(STRAIN DUMAS) (VZV)


PVP41_ROTS1
STRUCTURAL GLYCOPROTEIN GP41
AUTOGRAPHA CALIFORNICA NUCLEAR
132-166




POLYHEDROSIS VIRUS (


PVP42_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
 1-35
484-518
528-630


PVP4A_VACCC
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
 1-35
237-518
531-646


PVP4A_VACCV
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
355-359
718-763
794-828
857-891


PVP4A_VARV
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN WR)
262-296
355-359
718-763
794-828
857-891


PVP4B_FOWPV
MAJOR CORE PROTEIN P4A PRECURSOR
VARIOLA VIRUS
355-389
719-764
795-829
858-892


PVP4B_VACCC
MAJOR CORE PROTEIN P4B PRECURSOR
FOWLPOX VIRUS
131-172
296-330


PVP4B_VACCV
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
 3-37
125-163
249-283


PVP4B_VARV
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN WR)
 3-37
125-163
249-283


PVP4_BTV10
MAJOR CORE PROTEIN P4B PRECURSOR
VARIOLA VIRUS
 3-37
125-163
249-283


PVP4_BTV11
VP4 CORE PROTEIN
BLUETONGUE VIRUS
579-617
619-653




(SEROTYPE 10/ISOLATE USA)


PVP4_BTV13
VP4 CORE PROTEIN
BLUETONGUE VIRUS
569-607
609-643




(SEROTYPE 11/ISOLATE USA)


PVP4_BTV2A
VP4 CORE PROTEIN
BLUETONGUE VIRUS
569-607
609-643




(SEROTYPE 13/ISOLATE USA)


PVP4_NCDV
VP4 CORE PROTEIN
BLUETONGUE VIRUS
569-607
609-643




(SEROTYPE 2/ISOLATE USA)


PVP4_RDV
OUTER CAPSID PROTEIN VP4
NEBRASKA CALF DIARRHEA VIRUS
484-518
528-630




(STRAIN NCDV-LINCOLN)


PVP4_ROTB4
NONSTRUCTURAL PROTEIN PNS4
RICE DWARF VIRUS (RDV)
388-437
444-478
627-679


PVP4_ROTBC
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS
 1-35
112-146
338-379
484-518
528-653




(SEROTYPE 6/STRAIN B641)


PVP4_ROTBU
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS
 1-35
484-518
528-630




(STRAIN C486)


PVP4_ROTEH
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS
 1-35
112-146
338-379
484-518
528-653




(STRAIN UK)


PVP4_ROTG1
OUTER CAPSID PROTEIN VP4
EQUINE ROTAVIRUS
 1-35
112-146
227-274
345-379
484-518
528-653




(STRAIN H-2)


PVP4_ROTH1
OUTER CAPSID PROTEIN VP4
ROTAVIRUS (GROUP B/STRAIN IDIR)
117-151
476-519


PVP4_ROTH5
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
236-273
337-378
483-517
530-645




(SEROTYPE 1/STRAIN 1076)


PVP4_ROTH6
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
236-273
337-378
483-517
527-652




(SEROTYPE 2/STRAIN RV-5)


PVP4_ROTHD
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
112-146
237-274
338-379
484-518
531-646




(SEROTYPE 1/STRAIN 69M)


PVP4_ROTHJ
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
236-273
337-378
483-517
527-652




(SEROTYPE 2/STRAIN DS1)


PVP4_ROTHK
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
237-274
345-379
484-518
528-588




(STRAIN K8)


PVP4_ROTHL
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
337-378
483-517
527-652




(STRAIN KU)


PVP4_ROTHM
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
236-273
337-378
483-517
527-652




(STRAIN L26)


PVP4_ROTHN
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
337-378
483-517
530-645




(SEROTYPE 1/STRAIN M37)


PVP4_ROTHP
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
237-274
338-379
484-518
531-645




(SEROTYPE 3/STRAIN MCN13)


PVP4_ROTHR
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
236-273
337-378
483-517
527-652




(SEROTYPE 3/STRAIN P)


PVP4_ROTHT
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-38
 91-146
227-274




(SEROTYPE 3/STRAIN RRV)


PVP4_ROTHV
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
236-273
337-378
483-517
530-644




(SEROTYPE 4/STRAIN ST. THOMAS 3)


PVP4_ROTHW
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
237-273
344-378
483-517
527-652




(SEROTYPE 4/STRAIN VA70


PVP4_ROTP5
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS
 1-35
237-273
344-378
483-517
527-652




(SEROTYPE 1/STRAIN WA)


PVP4_ROTPC
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS
112-146
484-518
528-629




(SEROTYPE 5/STRAIN OSU)


PVP4_ROTPG
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS
 6-40
127-161
241-278
293-334
580-614




(GROUP C/STRAIN COWDEN)


PVP4_ROTPY
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS
 1-35
236-273
337-378
483-517
530-564
569-638




(STRAIN GOTTFRIED)


PVP4_ROTRH
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS
 1-35
112-146
237-274
484-518
528-629




(STRAIN YM)


PVP4_RPTSF
OUTER CAPSID PROTEIN VP4
RHESUS ROTAVIRUS
 1-38
112-146
237-274
338-379
484-522
531-646


PVP4_ROTSS
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS
 1-35
484-518
528-630




(STRAIN SA11-FEM)


PVP4_WTV
DE OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS
 1-35
237-274
345-379
484-518
531-646




(STRAIN SA11-SEM)


PVP5_AHSV4
NONSTRUCTURAL PROTEIN PNS4
WOUND TUMOR VIRUS (WTV)
28-62
565-621


PVP5_BRD
OUTER CAPSID PROTEIN VP5
AFRICAN HORSE SICKNESS VIRUS
 7-58
113-229




(SEROTYPE 4/STRAIN VACCI


PVP5_BTV10
OUTER CAPSID PROTEIN VP5
BROADHAVEN VIRUS (BRD)
45-86
 98-226


PVP5_BTV11
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
 92-150
154-222
404-438




(SEROTYPE 10/ISOLATE USA)


PVP5_BTV13
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
 92-150
154-222
404-445




(SEROTYPE 11/ISOLATE USA)


PVP5_BTV1A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
154-222
404-438




(SEROTYPE 13/ISOLATE USA)


PVP5_BTV1S
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
 92-143
148-222
404-438




(SEROTYPE 1/ISOLATE AUSTRALIA)


PVP5_BTV2A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
 92-143
148-222
404-438




(SEROTYPE 1/ISOLATE SOUTH AFRICA)


PVP5_EHDV1
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS
14-58
 92-222
404-438




(SEROTYPE 2/ISOLATE USA)


PVP5_RDV
OUTER CAPSID PROTEIN VP5
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
24-58
 92-126
163-233
291-325
399-433




(SEROTYPE 1) (EHDV


PVP5_WTV
OUTER COAT PROTEIN P5
RICE DWARF VIRUS (RDV)
38-86
 95-136
550-594


PVP61_BTV10
OUTER COAT PROTEIN P5
WOUND TUMOR VIRUS (WTV)
434-503
547-581
751-798


PVP61_MRDV
VP6 PROTEIN
BLUETONGUE VIRUS
163-215




(SEROTYPE 10/ISOLATE USA)


PVP61_NPVAC
PROBABLE NONSTRUCTURAL 41.0 KD
MAIZE ROUGH DWARF VIRUS (MRDV)
128-202



PROTEIN


PVP62_BTV10
61 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
29-96
351-386




POLYHEDROSIS VIRUS (


PVP64_NPVOP
VP6 PROTEIN
BLUETONGUE VIRUS
47-88
159-207
214-251




(SEROTYPE 10/ISOLATE USA)


PVP67_NPVAC
MAJOR ENVELOPE GLYCOPROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
296-361
431-479



PRECURSOR
POLYHEDROSIS VIRUS


PVP67_NPVGM
MAJOR ENVELOPE GLYCOPROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
44-78
289-364
443-477



PRECURSOR
POLYHEDROSIS VIRUS (


PVP6_BTV11
MAJOR ENVELOPE GLYCOPROTEIN
GALLERIA MELLONELLA NUCLEAR
206-281




POLYHEDROSIS VIRUS (GMN


PVP6_BTV13
VP6 PROTEIN
BLUETONGUE VIRUS
159-211




(SEROTYPE 11/ISOLATE USA)


PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS
159-211




(SEROTYPE 13/ISOLATE USA)


PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS
 68-102
159-211




(SEROTYPE 17/ISOLATE USA)


PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS
12-78
163-211




(SEROTYPE 1/ISOLATE SOUTH AFRICA)


PVP6_RDV
VP6 PROTEIN
BLUETONGUE VIRUS
44-78
135-187




(SEROTYPE 2/ISOLATE USA)


PVP6_WTV
STRUCTURAL PROTEIN P6
RICE DWARF VIRUS (RDV)
150-191
296-344
360-401


PVP6_WTVNJ
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (WTV)
144-178
286-334
400-434


PVP74_NPVAC
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS
144-178
286-334




(STRAIN NJ) (WTV)


PVP74_NPVCF
P74 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
387-456




POLYHEDROSIS VIRUS (


PVP75_HSVSA
P74 PROTEIN
CHORISTONEURA FUMIFERANA NUCLEAR
385-453




POLYHEDROSIS VIRU


PVP79_NPVAC
PROBABLE MEMBRANE ANTIGEN 75
HERPESVIRUS SAIMIRI (STRAIN 11)
50-99
163-211
931-984


PVP7_BTV10
79 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
44-78
363-397
406-440




POLYHEDROSIS VIRUS (


PVP7_BTV13
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-228




(SEROTYPE 10/ISOLATE USA), (SEROTYPE


PVP7_BTV17
VP7 CORE PROTEIN
BLUETONGUE VIRUS
201-235




(SEROTYPE 13/ISOLATE USA)


PVP7_BTV1A
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-228




(SEROTYPE 17/ISOLATE USA)


PVP7_BTV1S
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-235




(SEROTYPE 1/ISOLATE AUSTRALIA)


PVP7_BTV2A
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-228




(SEROTYPE 1/ISOLATE SOUTH AFRICA)


PVP7_EHDV1
VP7 CORE PROTEIN
BLUETONGUE VIRUS
184-228




(SEROTYPE 2/ISOLATE USA)


PVP7_RDV
VP7 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
16-50
134-178




(SEROTYPE 1) (EHDV


PVP7_WTV
NONSTRUCTURAL PROTEIN PNS7
RICE DWARF VIRUS (RDV)
47-95
172-255


PVP80_NPVAC
NONSTRUCTURAL PROTEIN PNS7
WOUND TUMOR VIRUS (WTV)
47-84
195-243
458-495


PVP87_NPVOP
CAPSID PROTEIN P80
AUTOGRAPHA CALIFORNICA NUCLEAR
 7-51
 99-142
156-204
221-298




POLYHEDROSIS VIRUS (


PVP8_BTV10
CAPSID PROTEIN P87
ORGYIA PSEUDOTSUGATA MULTICAPSID
 80-162
410-451




POLYHEDROSIS VIRUS


PVP8_BTV11
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
 54-102
185-219




(SEROTYPE 10/ISOLATE USA)


PVP8_BTV13
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
 54-102
185-219




(SEROTYPE 11/ISOLATE USA)


PVP8_BTV17
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
 54-102
185-219




(SEROTYPE 13/ISOLATE USA)


PVP8_BTV1A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
 54-102
185-219




(SEROTYPE 17/ISOLATE USA)


PVP8_BTV1S
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
 54-102
185-219




(SEROTYPE 1/ISOLATE AUSTRALIA)


PVP8_BTV2A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
 54-102
185-219




(SEROTYPE 1/ISOLATE SOUTH AFRICA)


PVP8_FOWPV
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
 54-102
185-219




(SEROTYPE 2/ISOLATE USA)


PVP9_RDV
STRUCTURAL PROTEIN VP8 PRECURSOR
FOWLPOX VIRUS
193-245


PVP9_WTV
NONSTRUCTURAL PROTEIN PNS9
RICE DWARF VIRUS (RDV)
13-47
186-226


PVP9_WTVNJ
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS (WTV)
140-212


PVPG_BYDV1
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS
140-212




(STRAIN NJ) (WTV)


PVPHE_NPVAC
PUTATIVE GENOME-LINKED PROTEIN
BARLEY YELLOW DWARF VIRUS
25-59



PRECURSOR
(ISOLATE MAV-PS1) (BYDV)


PVPHE_NPVOP
29 KD POLYHEDRAL ENVELOPE PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
146-223




POLYHEDROSIS VIRUS (


PVPR_SIVML
32 KD POLYHEDRAL ENVELOPE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
131-201
206-265




POLYHEDROSIS VIRUS


PVPU_HV1A2
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
 78-115




(K78 ISOLATE) (SIV-MAC)


PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-38




(ARV2/SF2 ISOLATE


PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-72




(BH10 ISOLATE) (HI


PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 5-72




(BH8 ISOLATE) (HIV


PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-59




(BRAIN ISOLATE) (H


PVPU_HV1C4
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-72




(BRU ISOLATE) (HIV


PVPU_HV1EL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-40




(CDC-451 ISOLATE)


PVPU_HV1H2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 6-40




(ELI ISOLATE) (HIV-


PVPU_HV1J3
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 5-72




(HXB2 ISOLATE) (HI


PVPU_HV1JR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 2-50




(JH3 ISOLATE) (HIV-


PVPU_HV1MA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-59




(JRCSF ISOLATE) (H


PVPU_HV1ND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 5-50




(MAL ISOLATE) (HI


PVPU_HV1PV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-40




(NDK ISOLATE) (HI


PVPU_HV1RH
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-72




(PV22 ISOLATE) (HI


PVPU_HV1S1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 1-39




(RF/HAT ISOLATE) (


PVPU_HV1Z2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-59




(SF162 ISOLATE) (HI


PVPU_SIVCZ
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 6-40




(Z2/CDC-Z34 ISOLAT


PVPX_HV2D2
VPU PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
21-78




(SIV(CPZ)) (CIV)


PVRNA_BSMV
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
42-85




(ISOLATE D205,7) (H


PVS05_ROTS1
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
40-74
857-898


PVS06_ROTBS
NONSTRUCTURAL PROTEIN NCVP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
248-287


PVS06_ROTGA
VP6 PROTEIN
BOVINE ROTAVIRUS
 6-44




(GROUP C/STRAIN SHINTOKU)


PVS06_ROTGI
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
 69-144




(ADULT DIARRHEA ROTA


PVS06_ROTHC
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
24-58
 64-103


PVS06_ROTPC
VP6 PROTEIN
HUMAN ROTAVIRUS
 9-43




(GROUP C/STRAIN BRISTOL)


PVS07_ROTBJ
VP6 PROTEIN
PORCINE ROTAVIRUS
 9-43




(GROUP C/STRAIN COWDEN)


PVS07_ROTBU
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KN-4)
 2-36
282-320


PVS07_ROTP5
NONSTRUCTURAL PROTEIN NCVP3
BOVINE ROTAVIRUS (STRAIN UK)
 88-153
199-236


PVS07_ROTS1
NONSTRUCTURAL PROTEIN NCVP3
PORCINE ROTAVIRUS
 88-162
202-236




(SEROTYPE 5/STRAIN OSU)


PVS08_ROTBU
NONSTRUCTURAL PROTEIN NCVP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
 88-153
199-236


PVS08_ROTS1
NONSTRUCTURAL PROTEIN NS2/VP9
BOVINE ROTAVIRUS (STRAIN UK)
 2-70
 75-119
160-226


PVS09_ROTB4
NONSTRUCTURAL PROTEIN NCVP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
 2-46
144-212
217-255


PVS09_ROTB5
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS
 2-54
282-320




(SEROTYPE 6/STRAIN B641)


PVS09_ROTB6
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A5)
 2-43
282-320


PVS09_ROTBA
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS
 2-54
282-320




(SEROTYPE 6/STRAIN 61A)


PVS09_ROTBB
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A44)
 2-54
282-320


PVS09_ROTBK
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS
 2-54
282-320




(SEROTYPE 10/STRAIN B223)


PVS09_ROTBN
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KK3)
 2-54
282-320


PVS09_ROTBT
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN NCDV)
 2-54
282-320


PVS09_ROTBU
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS
 2-43
282-320




(SEROTYPE 1/STRAIN T449)


PVS09_ROTC7
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN UK)
 2-54
282-320


PVS09_ROTEL
GLYCOPROTEIN VP7
CHICKEN ROTAVIRUS A
285-326




(SEROTYPE 7/STRAIN CH2)


PVS09_ROTGA
GLYCOPROTEIN VP7
EQUINE ROTAVIRUS (STRAIN L338)
282-320


PVS09_ROTGI
GLYCOPROTEIN VP7 PRECURSOR
ROTAVIRUS (GROUP B/STRAIN ADRV)
43-77




(ADULT DIARRHEA ROTA


PVS09_ROTH4
GLYCOPROTEIN VP7 PRECURSOR
ROTAVIRUS (GROUP B/STRAIN IDIR)
45-79


PVS09_ROTH9
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
 2-43
282-320




(SEROTYPE 4/STRAIN RV-4)


PVS09_ROTHA
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320




(SEROTYPE G/STRAIN RK9)


PVS09_ROTHB
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320




(SEROTYPE 2/STRAIN HU5)


PVS09_ROTHD
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
 2-43
282-320




(SEROTYPE G/STRAIN B37)


PVS09_ROTHH
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320




(SEROTYPE 2/STRAIN DS1)


PVS09_ROTHL
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320




(SEROTYPE 2/STRAIN HN126)


PVS09_ROTHM
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (STRAIN L26)
 1-35
282-320


PVS09_ROTHO
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
 2-43
282-320




(SEROTYPE 1/STRAIN M37)


PVS09_ROTHP
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
 2-43
282-320




(SEROTYPE 1/STRAIN MO AND STRAIN D)


PVS09_ROTHR
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320




(SEROTYPE 3/STRAIN P)


PVS09_ROTHS
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320




(SEROTYPE 3/STRAIN RRV)


PVS09_ROTHT
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
282-320




(SEROTYPE 2/STRAIN S2)


PVS09_ROTHV
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
18-56
208-242
282-320




(SEROTYPE 4/STRAIN ST. THOMAS 3)


PVS09_ROTHW
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
18-56
208-242
282-320





(SEROTYPE 4/STRAIN VA70)


PVS09_ROTP2
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS
 2-43
282-320




(SEROTYPE 1/STRAIN WA)


PVS09_ROTP3
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
282-320




(SEROTYPE 3/STRAIN AT/76)


PVS09_ROTP4
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
282-320




(SEROTYPE 3/STRAIN CRW-8)


PVS09_ROTP5
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
 2-56
208-242
282-320




(SEROTYPE 4/STRAIN OSU)


PVS09_ROTP6
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
282-320




(SEROTYPE 5/STRAIN OSU)


PVS09_ROTPB
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
282-320




(SEROTYPE 5/STRAIN TFR-41)


PVS09_ROTPK
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
18-56
208-242
282-320




(SEROTYPE 4/STRAIN BEN-144)


PVS09_ROTPM
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (STRAIN K)
18-56
282-320


PVS09_ROTPY
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS
18-56
208-242
282-320




(SEROTYPE 4/STRAIN BMI-1)


PVS09_ROTRH
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (STRAIN YM)
 1-35
282-320


PVS09_ROTS1
GLYCOPROTEIN VP7
RHESUS ROTAVIRUS
282-320


PVS10_ROTBN
GLYCOPROTEIN VP7
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
282-320


PVS10_ROTBS
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN NCDV)
 73-161


PVS10_ROTBU
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS
17-58




(GROUP C/STRAIN SHINTOKU)


PVS10_ROTH2
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN UK)
 73-161


PVS10_ROTH7
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A28)
 73-162


PVS10_ROTH8
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/CLONE 2)
 73-162


PVS10_ROTHC
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/CLONE 6)
 73-162


PVS10_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
121-158




(GROUP C/STRAIN BRISTOL)


PVS10_ROTS1
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS
 73-136




(SEROTYPE 1/STRAIN WA)


PVS11_ROTGA
NONSTRUCTURAL GLYCOPROTEIN NCVP5
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
 73-162


PVS11_ROTGI
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
24-65
 96-130




(ADULT DIARRHEA ROTA


PVS11_ROTH5
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
 9-68


PVS11_ROTH6
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
100-145




(SEROTYPE 2/STRAIN RV-5)


PVS11_ROTHB
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
107-144




(SEROTYPE 1/STRAIN 69M)


PVS11_ROTHD
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
107-144




(SEROTYPE G/STRAIN B37)


PVS11_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
111-145




(SEROTYPE 2/STRAIN DS1)


PVS11_ROTS1
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS
111-145




(SEROTYPE 1/STRAIN WA)


PVS48_TBRVC
MINOR OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
111-145


PVSH_MUMP1
SATELLITE RNA 48 KD PROTEIN
TOMATO BLACK RING VIRUS
217-265




(STRAIN C) (TBRV)


PVSH_MUMP2
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN SBL-1),
 9-46




AND MUMPS VIRUS (STRAIN SBL)


PVSH_MUMP4
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN EDINGBURGH 2),
13-47




AND (STRAIN EDINGB


PVSH_MUMPA
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN EDINGBURGH 4)
13-47


PVSH_MUMPB
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MATSUYAMA)
13-51


PVSH_MUMPE
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BELFAST)
13-52


PVSH_MUMPJ
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN ENDERS)
 9-46


PVSH_MUMPK
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN JERYL-LYNN)
 9-46


PVSH_MUMPL
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN KILHAM)
 9-51


PVSH_MUMPM
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BRISTOL 1)
13-55


PVSH_MUMPT
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
17-51


PVSH_MUMPU
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN TAKAHASHI)
13-47


PVSI1_REOVD
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS
13-47




(STRAIN URABE VACCINE AM9)


PVSI1_REOVJ
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 3/STRAIN DEARING)
 8-122
127-175
222-259


PVSI1_REOVL
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 2/STRAIN D5/JONES)
 1-178


PVSI2_REOVD
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 1/STRAIN LANG)
 3-107
112-198


PVSI2_REOVL
SIGMA 2 PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
350-384


PVSIS_REOVD
SIGMA 2 PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
350-384


PVSIS_REOVJ
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
 85-119


PVST2_HEVBU
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
 7-45


PVST2_HEVME
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS E VIRUS (STRAIN BURMA) (HEV)
318-352


PVST2_HEVMY
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS E VIRUS (STRAIN MEXICO) (HEV)
317-351


PVST2_HEVPA
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS E VIRUS (STRAIN MYANMAR) (HEV)
318-352


PVST2_HEVRH
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS E VIRUS (STRAIN PAKISTAN) (HEV)
318-352


PVT3A_CAPVI
STRUCTURAL PROTEIN 2
HEPATITIS E VIRUS (ISOLATE RHESUS) (HEV)
186-220


PVT4_CAPVI
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
120-158


PVT4_CAPVK
T4 PROTEIN
CAPRIPOXVIRUS (STRAIN INS-1)
 86-120


PVTER_EBV
T4 PROTEIN
CAPRIPOXVIRUS (STRAIN KS-1)
 86-120


PVTER_HCMVA
PROBABLE DNA PACKAGING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
235-290
595-629




(HUMAN HERPESVIRUS 4)


PVTER_HSV6U
PROBABLE DNA PACKAGING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
417-451
617-658


PVTER_HSVEB
PROBABLE DNA PACKAGING PROTEIN
HERPES SIMPLEX VIRUS
468-502




(TYPE 6/STRAIN UGANDA-1102)


PVTER_HSVI1
PROBABLE DNA PACKAGING PROTEIN
EQUINE HERPESVIRUS TYPE 1
11-45




(STRAIN AB4P) (EHV-1)


PVTER_HSVSA
PROBABLE DNA PACKAGING PROTEIN
ICTALURID HERPESVIRUS 1
 98-136
698-744




(CHANNEL CATFISH VIRUS) (CCV)


PVTER_VZVD
PROBABLE DNA PACKAGING PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
226-267


PVV_PI4HA
PROBABLE DNA PACKAGING PROTEIN
VARICELLA-ZOSTER VIRUS
588-622




(STRAIN DUMAS) (VZV)


PVY1_SEND6
V PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS
 4-38




(STRAIN TOSHIBA) (PIV-4A)


PY101_SSV1
Y1 PROTEIN
SENDAI VIRUS (STRAIN 6/94)
104-138


PY108_SSV1
HYPOTHETICAL 10.1 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARITCLE SSV1
16-80


PY110_SSV1
HYPOTHETICAL 10.8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARITCLE SSV1
 4-65


PY119_SSV1
HYPOTHETICAL 11.0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARITCLE SSV1
55-59


PY11K_TYDVA
HYPOTHETICAL 11.9 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARITCLE SSV1
30-96


PY12K_FCVC6
HYPOTHETICAL 11.2 KD PROTEIN
TOBACCO YELLOW DWARF VIRUS
53-87




(STRAIN AUSTRALIA) (TYDV)


PY12K_FCVF9
HYPOTHETICAL 12.2 KD PROTEIN
FELINE CALICIVIRUS
 4-38



IN COAT PROTEIN
(STRAIN CF1/68 FIV) (FCV)


PY12K_RHDV
HYPOTHETICAL 12.1 KD PROTEIN
FELINE CALICIVIRUS
 4-38



IN COAT PROTEIN
(STRAIN F9) (FCV)


PY12K_RHDV3
HYPOTHETICAL 12.7 KD PROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
13-50



IN COAT PROTEI
(RHDV)


PY13K_CLVK
HYPOTHETICAL 12.7 KD PROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
13-50



IN COAT PROTEIN
(STRAIN V-351) (RHDV)


PY13K_CLVN
HYPOTHETICAL 13.1 KD PROTEIN
CASSAVA LATENT VIRUS
40-77




(STRAIN WEST KENYAN 844)


PY13K_NPVOP
HYPOTHETICAL 13.1 KD PROTEIN
CASSAVA LATENT VIRUS
43-77




(STRAIN NIGERIAN)


PY13K_SSV1
HYPOTHETICAL 14.5 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
16-67



IN 39 KD PROTEIN
POLYHEDROSIS VIRUS


PY14K_SSV1
HYPOTHETICAL 13.2 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 2-36
62-96


PY168_ADE02
HYPOTHETICAL 13.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 5-39


PY16K_SSV1
HYPOTHETICAL PROTEIN C-168
HUMAN ADENOVIRUS TYPE 2
119-166


PY17K_SSV1
HYPOTHETICAL 15.6 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 1-35
 77-111


PY18K_SSV1
HYPOTHETICAL 17.8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 1-45
119-153


PY20K_SSV1
HYPOTHETICAL 18.0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
102-136


PY28K_SSV1
HYPOTHETICAL 20.4 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 73-107


PY2_SOCMV
HYPOTHETICAL 28.5 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
127-180


PY31K_SSV1
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE VIRUS
117-154


PY32K_SSV1
HYPOTHETICAL 31.5 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 7-97
100-141


PY38K_NPVAC
HYPOTHETICAL 31.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
230-278


PY3_SOCMV
HYPOTHETICAL 37.7 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
133-241




POLYHEDROSIS VIRUS (


PY5K9_SSV1
HYPOTHETICAL PROTEIN 3
SOYBEAN CHLOROTIC MOTTLE VIRUS
115-149


PY7_SOCMV
HYPOTHETICAL 5.9 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 1-51


PY85K_SSV1
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE VIRUS
56-94


PY8_SOCMV
HYPOTHETICAL 85.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 81-125
503-537
546-587
658-700


PYB01_FOWPM
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE VIRUS
46-83


PYB04_FOWPM
HYPOTHETICAL BAMHI-ORF1 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
 74-115
184-221


PYB05_FOWPM
HYPOTHETICAL BAMHI-ORF4 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
29-70


PYB06_FOWPM
HYPOTHETICAL BAMHI-ORF5 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
 3-37
61-95


PYB07_FOWPM
HYPOTHETICAL BAMHI-ORF6 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
115-149


PYB10_FOWPM
HYPOTHETICAL BAMHI-ORF7 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
344-378


PYB12_FOWPM
HYPOTHETICAL BAMHI-ORF10 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
162-253


PYB13_FOWPM
HYPOTHETICAL BAMHI-ORF12 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
 4-47
117-153


PYBL2_EBV
HYPOTHETICAL BAMHI-ORF13 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
122-163


PYDH1_HSVS7
HYPOTHETICAL BBLF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
458-506




(HUMAN HERPESVIRUS 4)


PYF30_FOWP1
HYPOTHETICAL 24.1 KD PROTEIN IN
HERPESVIRUS SAIMIRI (STRAIN 484-77)
147-188



DHFR 3′REGION


PYGA1_HSVMB
HYPOTHETICAL 30.9 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
160-204


PYGA1_HSVMM
HYPOTHETICAL 23.6 KD PROTEIN
MAREK'S DISEASE HERPESVIRUS
176-211



IN GLYCOPROTEI
(STRAIN BC-1) (MDHV)


PYH22_VACCV
HYPOTHETICAL 23.6 KD PROTEIN
MAREK'S DISEASE HERPESVIRUS
176-211



IN GLYCOPROTEI
(STRAIN MD5) (MDHV)


PYHR3_VACCV
HYPOTHETICAL 21.7 KD HINDIII-C
VACCINIA VIRUS (STRAIN WR)
34-78
 95-139



PROTEIN


PYKR4_EBV
HYPOTHETICAL HOST RANGE 27.4 KD
VACCINIA VIRUS (STRAIN WR)
24-58
181-222



PROTEIN


PYL15_ADE41
HYPOTHETICAL BKRF4 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
16-58




(HUMAN HERPESVIRUS 4)


PYLR2_EBV
HYPOTHETICAL 12.4 KD PROTEIN IN
HUMAN ADENOVIRUS TYPE 41
39-81



33 KD PROTEIN


PYOR1_COYMV
HYPOTHETICAL BLRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 64-125




(HUMAN HERPESVIRUS 4)


PYOR2_COYMV
HYPOTHETICAL 23 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
 94-147




(COYMV)


PYOR2_LELV
HYPOTHETICAL 15 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
33-77




(COYMV)


PYOR3_TTV1
HYPOTHETICAL 28.4 KD PROTEIN
LELYSTAD VIRUS (LV)
100-134


PYOR5_ADEG1
HYPOTHETICAL 6.9 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
14-54




(STRAIN KRA1) (TTV1)


PYORA_TTV1
HYPOTHETICAL 31.5 KD PROTEIN
AVIAN ADENOVIRUS GAL1
 70-127




(STRAIN PHELPS) (FOWL ADENOVIRU


PYORD_TTV1
HYPOTHETICAL 8.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
21-67




(STRAIN KRA1) (TTV1)


PYORE_TTV1
HYPOTHETICAL 15.4 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
 6-51
 89-130




(STRAIN KRA1) (TTV1)


PYORL_TTV1
HYPOTHETICAL 15.3 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
 78-122




(STRAIN KRA1) (TTV1)


PYORQ_TTV1
HYPOTHETICAL 26.8 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
 1-45




(STRAIN KRA1) (TTV1)


PYORT_TTV1
HYPOTHETICAL 7.3 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
 1-43




(STRAIN KRA1) (TTV1)


PYORW_TTV1
HYPOTHETICAL 38.7 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
 4-38
281-315




(STRAIN KRA1) (TTV1)


PYP12_RTBV
HYPOTHETICAL 12.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1
 4-89




(STRAIN KRA1) (TTV1)


PYP12_RTBVP
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
33-72


PYP24_RTBV
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
33-72




(ISOLATE PHILIPPINES) (RTB


PYP24_RTBVP
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
 51-101
106-157


PYP46_RTBV
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
 51-101
106-157




(ISOLATE PHILIPPINES) (RT


PYP46_RTBVP
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
 49-111
197-231


PYP63_NPVAC
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
 49-111
197-231




(ISOLATE PHILIPPINES) (RT


PYP7A_TNVA
HYPOTHETICAL PROTEIN IN P6.5 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR
32-73




POLYHEDROSIS VIRUS (


PYPOH_NPVAC
HYPOTHETICAL P7A PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN A) (TNV)
 1-65


PYPOL_IPNVJ
HYPOTHETICAL 23.6 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
116-153



IN POLYHEDRIN 5
POLYHEDROSIS VIRUS (


PYQ1_AMEPV
HYPOTHETICAL 17.3 KD PROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS
25-66




(SEROTYPE JASPER)


PYQ3_AMEPV
HYPOTHETICAL 7.6 KD PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
 9-61



IN TK 5′REGION


PYRF2_HSV6G
HYPOTHETICAL PROTEIN IN TK 3′REGION
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
 1-57
62-96
149-183


PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
193-264


PYRF4_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
134-175


PYRP2_IRV6
HYPOTHETICAL PROTEIN RF4
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
252-286
404-442


PYRR1_EBV
REPETITIVE PROTEIN ORF2
CHILO IRIDESCENT VIRUS (CIV)
 1-45




(INSECT IRIDESCENT VIRUS TYP


PYSR1_EBV
HYPOTHETICAL BRRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 96-130




(HUMAN HERPESVIRUS 4)


PYTR1_EBV
HYPOTHETICAL BSRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 98-177




(HUMAN HERPESVIRUS 4)


PYUB2_NPVOP
HYPOTHETICAL BTRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
390-424




(HUMAN HERPESVIRUS 4)


PYVAC_VACCC
HYPOTHETICAL 24.0 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
25-69
170-204



IN UBIQUITIN 3′RE
POLYHEDROSIS VIRUS


PYVAG_VACCC
HYPOTHETICAL 14.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
29-63


PYVAH_VACCC
HYPOTHETICAL 9.3 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 3-37


PYVAN_VACCC
HYPOTHETICAL 14.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 78-112


PYVBH_VACCC
HYPOTHETICAL 7.9 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
23-57


PYVCC_VACCC
HYPOTHETICAL 7.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 5-39


PYVDB_VACCC
HYPOTHETICAL 9.2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
11-48


PYVDB_VACCV
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
29-80


PYVDC_VACCV
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
46-80


PYVGB_VACCC
HYPOTHETICAL 7.3 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
 7-41


PYVHA_VACCC
HYPOTHETICAL 8.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
10-51



HYPOTHETICAL 8.1 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 9-53
















TABLE VI







107 X 178 X 4 SEARCH MOTIF RESULTS SUMMARY


FOR ALL VIRAL (NON-BACTERIOPHAGE) PROTEINS


















PCGENE
107x178x4
All Viruses (no bacteriophages)











FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9





P194K_TRVSY
POT 194 KD PRO
TOBACCO RATTLE VIRUS (STRAIN SYM)
387-414
1087-
1142-












1114
1169


PAANT_HDVAM
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVD3
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVTT
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVM2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVS1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
16-43
106-133


PAANT_HDVS2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
16-43
106-133


PAANT_HDVWO
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAT3H_FOWPM
ANTITHROMBIN-III HOMOLOG
FOWLPOX VIRUS (ISOLATE HP-438 [MUNICH])
72-106


PAT11_VACCV
94 KD A-TYPE INCLUSION PRO
VACCINIA VIRUS (STRAIN WR)
14-56
67-94
424-472
570-625


PAT11_VARV
81 KD A-TYPE INCLUSION PRO
VARIOLA VIRUS
67-94
425-504
571-605


PAT12_HSV11
ALPHA TRANS-IND FACTOR 78
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
308-335



KD PRO


PAT12_HSV1F
ALPHA TRANS-IND FACTOR 77
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
308-335



KD PRO


PAT12_HSVEB
ALPHA TRANS-IND FACTOR 82
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
294-321



KD PRO


PATIN_HSVEB
ALPHA TRANS-IND PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
255-289


PATI_COWPX
A-TYPE INCLUSION PROTEIN
COWPOX VIRUS
14-56
67-94
426-498
572-620
837-841
934-990
1234-











1261


PBZLF_EBV
BZLF1 TRANS-ACTIVATOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
193-220



PROTEIN


PCAHH_VACCC
CELL SURFACE-BINDING
VACCINIA VIRUS (STRAIN COPENHAGEN)
84-111
117-144



PROTEIN


PCAHH_VACCV
CELL SURFACE-BINDING
VACCINIA VIRUS (STRAIN WR)
84-111
117-144



PROTEIN


PCAHH_VARV
CELL SURFACE-BINDING
VARIOLA VIRUS
84-111
117-144



PROTEIN


PCELF_HSVEB
CELL FUSION PROTEIN
EQUINE HERPESVIRUS TYPE 1
312-339



PRECURSOR
(STRAINS AB4P and Ky A)


PCGH2_HSVSA
CYCLIN HOMOLOG
HERPESVIRUS SAIMIRI (STRAIN 11)
127-154


PCOA1_POVHA
COAT PROTEIN VP1
HAMSTER POLYOMAVIRUS
159-186


PCOA2_BFDV
COAT PROTEIN VP2
BUDGERIGAR FLEDGLING DISEASE VIRUS
160-187


PCOA2_POVBO
COAT PROTEIN VP2
BOVINE POLYOMAVIRUS
49-76


PCOA2-POVJC
COAT PROTEIN VP2
POLYOMAVIRUS JC
37-64


PCOA2_POVLY
COAT PROTEIN VP2
LYMPHOTROPIC POLYOMAVIRUS
170-204


PCOA2_POVMK
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS (STRAIN KILHAM)
22-49


PCOA2_SV40
COAT PROTEIN VP2
SIMIAN VIRUS 40
178-205


PCOA3_AAV2
PROBABLE COAT PROTEIN 3
ADENO-ASSOCIATED VIRUS 2
120-147


PCOA3-TTV1
COAT PROTEIN TP3
THERMOPROTEUS TENAS VIRUS 1 (STRAIN KRA1)
3-30


PCOAT_ADVG
COAT PROTEIN VP1
ALEUTIAN MINK DISEASE PARVOVIRUS
194-221




(STRAIN G)


PCOAT_BLRV
COAT PROTEIN
BEAN LEAFROLL VIRUS
96-123


PCOAT_CAMVC
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-184)
63-90
193-220
461-488


PCOAT_CAMVD
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
64-91
194-221


PCOAT_CAMVE
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
63-90
193-220


PCOAT_CAMVN
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
63-90
192-219
461-488


PCOAT_CAMVS
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
64-91
194-221




STRASBOURG)


PCOAT_CARMV
COAT PROTEIN
CARNATION MOTTLE VIRUS
16-43


PCOAT_CHVP1
MAJOR CAPSID PROTEIN

PARAMECIUM BURSARIA CHLORELLA VIRUS 1
41-86


PCOAT_CNV
COAT PROTEIN
CUCUMBER NECROSIS VIRUS
328-362


PCOAT_CSMV
COAT PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
62-89


PCOAT_CYMV
COAT PROTEIN
CLOVER YELLOW MOSAIC VIRUS
170-200


PCOAT_FCVC6
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN CFI/68 FIV)
566-600


PCOAT_FCVF4
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN JAPANESE F4)
516-543
566-600


PCOAT_FCVF9
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN F9)
519-546
569-603


PCOAT_FMVD
PROBABLE COAT PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
220-247
358-385


PCOAT_LSV
COAT PROTEIN
LILY SYMPTOMLESS VIRUS
32-700
246-273


PCOAT_MISV
COAT PROTEIN
MISCANTHUS STREAK VIRUS
139-166


PCOAT_ORSV
COAT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
106-133


PCOAT_PAVHB
PROBABLE COAT PROTEIN VP1
HUMAN PARVOVIRUS B19
524-551
569-596


PCOAT_POPMV
COAT PROTEIN
POPLAR MOSAIC VIRUS (ISOLATE ATCC PV275)
46-73


PCOAT_SOCMV
COAT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
128-162


PCOAT_TAMV
GENOME POLYPROTEIN
TAMARILLO MOSAIC VIRUS
21-48


PCOAT_TAV
COAT PROTEIN
TOMATO ASPERMY VIRUS
23-50


PCOAT_TBSVB
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS (STRAIN BS-3)
3-30
41-68


PCOAT_TBSVC
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY)
97-134


PCOAT_TCV
COAT PROTEIN
TURNIP CRINKLE VIRUS
232-259


PCOAT_TMGMV
COAT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS
104-131


PCOAT_TMV
COAT PROTEIN
TOBACCO MOSAIC VIRUS (VULGARE)
104-131


PCOAT_TMVCO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN COWPEA)
78-132


PCOAT_TMVDA
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN DAHLEMENSE)
104-131


PCOAT_TMVER
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN ER)
104-131


PCOAT_TMVO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN O AND KOKUBU)
104-131


PCOAT_TMVOM
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN OM)
104-131


PCOAT_TMVTO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
104-131


PCOAT_TNVA
COAT PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN A)
90-117


PCOAT_TRVPS
COAT PROTEIN
TOBACCO RATTLE VIRUS (STRAINS PSG and PLB)
118-145


PCOAT_TYDVA
COAT PROTEIN
TOBACCO YELLOW DWARF VIRUS (STRAIN
10-37




AUSTRALIA)


PCOAT_TYMV
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS
41-68


PCOAT_TYMVA
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS (AUSTRALIAN
41-68




ISOLATE)


PDNB2_ADE07
EARLY E2A DNA-BINDING
HUMAN ADENOVIRUS TYPE 7
46-73



PROTEIN


PDNBI_EBV
MAJOR DNA-BINDING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
997-1004
1041-






1068


PDNBI_HCMVA
MAJOR DNA-BINDING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
437-464


PDNBI_HSVSA
MAJOR DNA-BINDING PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
333-368
512-539


PDNBI_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
584-618


PDNBI_POVJC
DNA-BINDING PROTEIN
POLYOMAVIRUS JC
2-29


PDNBI_SCMVC
MAJOR DNA-BINDING PROTEIN
SIMIAN CYTOMEGALOVIRUS (STRAIN COLBURN)
435-462
532-559


PDNLI_VACCC
DNA LIGASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
104-131
172-199
358-385


PDNLI_VACCV
DNA LIGASE
VACCINIA VIRUS (STRAIN WR)
104-131
172-199
358-385


PDNLI_VARV
DNA LIGASE
VARIOLA VIRUS
104-131
172-199
358-385


PDPOL_ADE12
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 12
403-431


PDPOL_CBEPV
DNA POLYMERASE

CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
23-64
202-240


PDPOL_CHVN2
DNA POLYMERASE
CHLORELLA VIRUS NY-2A
338-365


PDPOL_CHVP1
DNA POLYMERASE
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
338-365


PDPOL_FOWPV
DNA POLYMERASE
FOWLPOX VIRUS
17-51
370-416
621-655
772-799


PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
753-780


PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (BROWN SHANGHAI
5-39




DUCK ISOLATE S5)


PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (STRAIN CHINA)
5-39


PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (WHITE SHANGHAI
5-39
304-331




DUCK ISOLATE S31)


PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS VIRUS
271-325


PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
5-39


PDPOL_HPBVP
DNA POLYMERASE
HEPATITIS B VIRUS
456-483




(SUBTYPE ADW/STRAIN PHILIPPINO/PFDW294)


PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADYW)
443-470


PDPOL_HSVI1
DNA POLYMERASE
ICTALURID HERPESVIRUS 1
328-366
710-737


PDPOL_HSVSA
DNA POLYMERASE
HERPESVIRUS SAIMIRI (STRAIN 11)
625-652


PDPOL_NPVAC
DNA POLYMERASE

AUTOGRAPHA CALIFONICA NUCLEAR
598-643




POLYHEDROSIS VIRUS


PDPOL_NPVLD
DNA POLYMERASE
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
357-384




POLYHEDROSIS VIRUS


PDPOL_VACCC
DNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
770-797


PDPOL_VACCV
DNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
770-797


PDPOL_VARV
DNA POLYMERASE
VARIOLA VIRUS
769-796


PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 1
285-326


PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 59
290-331


PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
212-242
290-331


PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
211-241
289-330


PDPOL_WHV81
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
212-242
290-331


PDTXH_CORBE
DIPHTH TOXIN HOMOLOG
CORYNEPHAGE BETA
516-533



CRM228 PREC


PDTX_CORBE
DIPHTHERIA TOXIN PRECURSOR
CORYNEPHAGE BETA
523-560


PDTX_COROM
DIPHTHERIA TOXIN PRECURSOR
CORYNEPHAGE OMEGA
516-533


PDUT_HSVE4
DEOXYU 5′-TRIPHOSPH
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
90-117



NUCHYDROLASE


PDUT_HSVSA
DEOXYU 5′-TRIPHOSPH
HERPESVIRUS SAIMIRI (STRAIN 11)
179-213



NUCHYDROLASE


PE1BL_ADE07
E1B PROTEIN, LARGE
HUMAN ADENOVIRUS TYPE 7
126-153



T-ANTIGEN


PE1BL_ADE40
E1B PROTEIN, LARGE
HUMAN ADENOVIRUS TYPE 40
136-163



T-ANTIGEN


PE1BS_ADE12
E1B PROTEIN, SMALL
HUMAN ADENOVIRUS TYPE 12
3-30



T-ANTIGEN


PE1BS_ADEM1
E1B PROTEIN, SMALL
MOUSE ADENOVIRUS TYPE 1
122-173



T-ANTIGEN


PE314_ADE02
EARLY E3B 14 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
2-29


PE314_ADE07
EARLY E3 15.3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
21-48


PE320_ADE03
EARLY E3 20.1 KD
HUMAN ADENOVIRUS TYPE 3
5-32
70-100



GLYCOPROTEIN


PE320_ADE35
EARLY E3 20.3 KD
HUMAN ADENOVIRUS TYPE 35
70-107



GLYCOPROTEIN


PE321_ADE35
EARLY E3 20.6 KD
HUMAN ADENOVIRUS TYPE 35
125-161



GLYCOPROTEIN


PE3GL_ADEM1
EARLY E3 17.7 KD
MOUSE ADENOVIRUS TYPE1
38-66



GLYCOPROTEIN


PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN B95-8)
55-82


PEFT1_VARV
EARLY TRANS FACTOR 70 KD
VARIOLA VIRUS
307-341
470-497



SUBUNIT


PENV_AVIRE
ENV POLYPROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
420-468


PENV_AVISN
ENV POLYPROTEIN
AVIAN SPLEEN NECROSIS VIRUS
6-33
426-474


PENV_BAEVM
ENV POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
395-452


PENV_BIV06
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
17-44
544-603
631-695




(ISOLATE 106)


PENV_BIV27
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
17-44
573-632
660-724




(ISOLATE 127)


PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN
304-377




ISOLATE FLK)


PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN
304-377




ISOLATE)


PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN)
304-377




ISOLATE VDM)


PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM
311-377




ISOLATE LB285)


PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM
304-377




ISOLATE LB59)


PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (JAPANESE
304-377




ISOLATE BLV-1)


PENV_CAEVG
ENV POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
165-192




(STRAIN G63)


PENV_EIAV1
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712




(CLONE P3.2-1)


PENV_EIAV2
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-695




(CLONE P3.2-2)


PENV_EIAV3
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712




(CLONE P3.2-3)


PENV_EIAV5
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
669-696




(CLONE P3.2-5)


PENV_EIAV9
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712




(CLONE 1369)


PENV_EIAVC
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712




(CLONE CL22)


PENV_EIAVW
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712




(STRAIN WSU5)


PENV_EIAVY
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
668-712




(ISOLATE WYOMING)


PENV_FENV1
ENV POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECE1
33-60
517-544


PENV_FIVPE
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE
650-680
722-749




PETALUMA)


PENV_FIVSD
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE
639-668
720-747




SAN DIEGO)


PENV_FIVT2
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE
640-679
721-748




TM2)


PENV_FLVC6
ENV POLYPROTEIN
FELINE LEUKEMIA PROVIRUS (CLONE CFE-6)
509-538


PENV_FLVGL
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS (STRAIN A/GLASGOW-1)
490-519


PENV_FLVLB
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS (STRAIN LAMBDA-B1)
510-539


PENV_FLVSA
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS (STRAIN SARMA)
487-516


PENV_FOAMV
ENV POLYPROTEIN
HUMAN SPUMARETROVIRUS
14-41
318-355
866-893


PENV_FSVGA
ENV POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN
510-539




GARDNER-ARNSTEIN)


PENV_FSVGB
ENV POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN GA)
490-519


PENV_FSVSM
ENV POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN SM)
493-522


PENV_GALV
ENV POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
176-203
523-564


PENV_HTL1A
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I
342-376




(STRAIN ATK)


PENV_HTL1C
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I
342-376




(CARIBBEAN ISOLATE)


PENV_HTL1M
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I
342-376




(ISOLATE MT-2)


PENV_HTLV2
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE II
336-370


PENV_HV1A2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
544-592
630-682
790-825




(ARV2/SF2 ISOLATE)


PENV_HV1B1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
631-683
791-818




(BH10 ISOLATE)


PENV_HV1B8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
540-589
626-678
786-813




(BH8 ISOLATE)


PENV_HV1BN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
267-294
338-365
562-590
628-679
787-815




(BRAIN ISOLATE)


PENV_HV1BR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
550-599
636-688
796-823




(BRU ISOLATE)


PENV_HV1C4
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
397-424
557-606
643-695
803-835




(CDC-451 ISOLATE)


PENV_HV1EL
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
255-296
386-413
543-591
628-680




(ELI ISOLATE)


PENV_HV1H2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
631-683
791-818




(HXB2 ISOLATE)


PENV_HV1H3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
631-683
791-818




(HXB3 ISOLATE)


PENV_HV1J3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
350-377
556-605
642-694
802-829




(JH3 ISOLATE)


PENV_HV1JR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
336-363
622-675
783-811




(JRCSF ISOLATE)


PENV_HV1KB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
274-301
555-596
637-677
776-824




(STRAIN KB-1-GP32)


PENV_HV1MA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
547-595
633-707
794-826




(MAL ISOLATE)


PENV_HV1MF
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
543-592
629-681
789-816




(MFA ISOLATE)


PENV_HV1MN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-370
567-595
632-684
791-819




(MN ISOLATE)


PENV_HV1N5
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
326-360




(NEW YORK-5 ISOLATE)


PENV_HV1ND
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
249-290
536-583
621-673
783-813




(NDK ISOLATE)


PENV_HV1OY
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
544-593
630-704
789-820




(OYI ISOLATE)


PENV_HV1PV
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
631-683
791-818




(PV22 ISOLATE)


PENV_HV1RH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
280-307
351-378
554-602
640-692
800-832




(RF/HAT ISOLATE)


PENV_HV1S1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
333-363
536-585
622-674
782-809




(SF162 ISOLATE)


PENV_HV1S3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
541-589
627-679
787-815




(SF33 ISOLATE)


PENV_HV1SC
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
338-365
545-593
631-683




(SC ISOLATE)


PENV_HV1W1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
338-365
545-593
631-683
791-818




(WMJ1 ISOLATE)


PENV_HV1W2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
334-361
536-584
622-674
782-809




(WMJ2 ISOLATE)


PENV_HV1Z2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
255-296
542-591
628-680
790-820




(Z2/CDC-Z34 ISOLATE)


PENV_HV1Z3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
251-292




(ZAIRE 3 ISOLATE)


PENV_HV1Z6
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
256-297
545-593
630-682
792-822




(ZAIRE 6 ISOLATE)


PENV_HV1Z8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
266-307
573-601
634-678
797-828




(Z-84 ISOLATE)


PENV_HV1ZH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
545-594
627-666
791-823




(ZAIRE HZ321 ISOLATE)


PENV_HV2BE
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
61-88
532-591
621-648
653-697




(ISOLATE BEN)


PENV_HV2CA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
534-593
623-650
655-699




(ISOLATE CAM2)


PENV_HV2D1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
61-88
523-550
555-582
644-688




(ISOLATE D194)


PENV_HV2G1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
60-87
524-551
556-583
613-640
645-693




(ISOLATE GHANA-1)


PENV_HV2NZ
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
61-88
524-551
556-583
613-640
662-689




(ISOLATE N1H-Z)


PENV_HV2RO
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
58-85
533-592
622-698




(ISOLATE ROD)


PENV_HV2S2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
442-476
527-554
559-586
648-682




(ISOLATE ST/24 1C#2)


PENV_HV2SB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
557-584
614-673




(ISOLATE SBL1SY)


PENV_HV2ST
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
442-476
527--554
559-586
648-692




(ISOLATE ST)


PENV_MCFF
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING MURINE LEUKEMIA
473-512




VIRUS


PENV_MCFF3
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING MURINE LEUKEMIA
488-515




VIRUS (ISOLATE C1-3)


PENV_MLVAV
ENV POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
517-544


PENV_MLVCB
ENV POLYPROTEIN
CAS-BR-E MURINE LEUKEMIA VIRUS
510-539


PENV_MLVF5
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57)
523-553


PENV_MLVFF
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29)
523-553


PENV_MLVFP
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE
523-553




PVC-211)


PENV_MLVHO
ENV POLYPROTEIN
HOMULV MURINE LEUKEMIA VIRUS
510-540


PENV_MLVK1
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA VIRUS
40-81


PENV_MLVMO
ENV POLYPROTEIN
MOLONEY MURINE LEUKEMIA VIRUS
502-543


PENV_MLVRD
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
497-538


PENV_MLVRK
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS (STRAIN
497-538




KAPLAN)


PENV_MMTVB
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
458-485
562-589


PENV_MMTVG
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
458-485
562-589


PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
422-470


PENV_MSVFB
ENV POLYPROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
57-84


PENV_OMVVS
ENV POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
42-69
196-223
780-807


PENV_RMCFV
ENV POLYPROTEIN
RAUSCHER MINK CELL FOCUS-INDUCING VIRUS
487-517


PENV_SFV1
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
14-41
866-901


PENV_SFV3L
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
18-45
319-357
673-700
863-898


PENV_SIVA1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155
269-310
561-588
592-619
652-679
697-724




ISOLATE)


PENV_SIVAG
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3
270-301
566-593
597-624
658-685
703-730




ISOLATE)


PENV_SIVAI
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
257-291
336-372
548-603
634-708




(ISOLATE AGM/CLONE GR1-1)


PENV_SIVAT
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
3-30
268-298
590-617
651-678




(TYO-1 ISOLATE)


PENV_SIVCZ
ENV POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
160-187
253-289
336-366
526-584
627-654


PENV_SIVGB
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
8-35
158-185
589-650
784-816




(ISOLATE GB1)


PENV_SIVM1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
120-150
550-609
671-715




(MM142-83 ISOLATE)


PENV_SIVM2
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
156-215
277-289




(MM251 ISOLATE)


PENV_SIVMK
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
553-608




(K6W ISOLATE)


PENV_SIVML
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
549-608




(K78 ISOLATE)


PENV_SIVS4
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
281-308
553-612
642-669
691-718




(F236/SMH4 ISOLATE)


PENV_SIVSP
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
286-313
554-595
646-722




(PBJ/BC13 ISOLATE)


PENV_SMRVH
ENV POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
400-462


PENV_SRV1
ENV POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
409-471


PENV_VILV
ENV POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
22-62
773-800


PENV_VILV1
ENV POLYPROTEIN
VISNA LENTIVIRUS
22-62
780-807




(STRAIN 1514/CLONE LV1-1KS1)


PENV_VILV2
ENV POLYPROTEIN
VISNA LENTIVIRUS
22-62
782-809




(STRAIN 1514/CLONE LV1-1KS2)


PETF1_FOWP1
EARLY TRANS FACTOR
FOWLPOX VIRUS (STRAIN FP-1)
190-224



70 KD SUBUNIT


PETF1_SFVKA
EARLY TRANS FACTOR
SHOPE FIBROMA VIRUS (STRAIN KASZA)
306-340
469-496
550-587



70 KD SUBUNIT


PETF1_VACCC
EARLY TRANS FACTOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
307-341
470-497



70 KD SUBUNIT


PETF1_VACCV
EARLY TRANS FACTOR
VACCINIA VIRUS (STRAIN WR)
307-341
470-497



70 KD SUBUNIT


PETF2_VACCC
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN COPENHAGEN)
66-97
174-210
302-332



FACTOR 82


PETF2_VARV
EARLY TRANSCRIPTION
VARIOLA VIRUS
66-97
174-210
302-332



FACTOR 82


PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
109-139


PFIB2_ADE40
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
179-237


PFIB2_ADE41
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
178-216


PFIBP_ADE02
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 2
308-335


PFIBP_ADE40
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
324-351
446-473


PFIBP_ADE41
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
339-366
461-488


PFIBP_ADEB3
FIBER PROTEIN
BOVINE ADENOVIRUS TYPE 3
118-145
164-191


PFIBP_ADEM1
FIBER PROTEIN
MOUSE ADENOVIRUS TYPE 1
275-305
325-352


PFOSX_MSVFR
V-FOS/FOX TRANSFORMING
FBR MURINE OSTEOSARCOMA VIRUS
138-169



PROTEIN


PFOS_AVINK
P55-V-FOS TRANSFORMING
AVIAN RETROVIRUS NK24
116-147



PROTEIN


PFOS_MSVFB
P55-V-FOS TRANSFORMING
FBJ MURINE OSTEOSARCOMA VIRUS
162-193



PROTEIN


PGAG_AVISN
GAG POLYPROTEIN
AVIAN SPLEEN NECROSIS VIRUS
270-297


PGAG_EIAVY
GAG POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
144-171




(ISOLATE WYOMING)


PGAG_FOAMV
GAG POLYPROTEIN
HUMAN SPUMARETROVIRUS
621-648


PGAG_GALV
GAG POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
396-442
447-474


PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
91-118




(ARV2/SF2 ISOLATE)


PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
91-118




(JH3 ISOLATE)


PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
87-118




(MN ISOLATE)


PGAG_HV2BE
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
88-115




(ISOLATE BEN)


PGAG_HV2D1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
88-115




(ISOLATE D194)


PGAG_HV2NZ
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
88-115




(ISOLATE NIH-Z)


PGAG_HV2ST
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
88-115




(ISOLATE ST)


PGAG_IPHA
RETROVIRUS-RELATED GAG
HAMSTER INTRACISTERNAL A-PARTICLE
270-297



POLYPROTEI


PGAG_IPMA
RETROVIRUS-RELATED GAG
MOUSE INTRACISTERNAL A-PARTICLE
33-60
69-103
232-259



POLYPROTEI


PGAG_IPMAE
RETROVIRUS-RELATED GAG
MOUSE INTRACISTERNAL A-PARTICLE
96-130



POLYPROTEI


PGAG_MMTVB
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
84-151
156-187


PGAG_MMTVC
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
84-116


PGAG_MMTVG
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
84-151
156-187


PGAG_MPMV
GAG POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS (MPMV)
222-260


PGAG_SCVLA
MAJOR COAT PROTEIN

SACCHAROMYCES CEREVISIAE VIRUS L-A
497-531
624-651


PGAG_SIVAI
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
473-507




(ISOLATE AGM/CLONE GR1-1)


PGAG_SIVMK
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115




(K6W ISOLATE)


PGAG_SIVMS
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115




(STM ISOLATE)


PGAG_SIVS4
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115




(F236/SMH4 ISOLATE)


PGAG_SIVSP
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115




(PBJ/BC13 ISOLATE)


PGAG_SMSAV
GAG POLYPROTEIN
SIMIAN SARCOMA VIRUS
397-443


PGAG_SRV1
GAG POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
223-261


PHELI_HSVEB
PROBABLE HELICASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
184-211
321-348


PHELI_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI (STRAIN 11)
418-449


PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
490-517
701-728


PHEMA_CVBF
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN F15)
208-242



PRECURSOR


PHEMA_CVBLY
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN LY-138)
208-242



PRECURSOR


PHEMA_CVBM
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN MEBUS)
208-242



PRECURSOR


PHEMA_CVBQ
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN QUEBEC)
208-242



PRECURSOR


PHEMA_CVHOC
HEMAGGLUTININ-ESTERASE
HUMAN CORONAVIRUS (STRAIN OC43)
208-242



PRECURSOR


PHEMA_IAA1C
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/A1CH1/2/68)
387-453


PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
24-51
371-437




A/BANGKOK/1/79


PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/BUDGERIGAR/HOKKAIDO/1/77)


PHEMA_IACAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
9-36




A/CAMEL/MONGOLIA/82)


PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/CHICKEN/ALABAMA/1/75)


PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
31-58
382-441
494-528




A/CHICKEN/GERMANY/N/49)


PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
396-426




A/CHICKEN/PENNSYLVANIA/1/83)


PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
396-426




A/CHICKEN/PENNSYLVANIA/1370/83)


PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
119-146
384-443




A/CHICKEN/VICTORIA/1/85)


PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/DUCK/ALBERTA/28/76)


PHEMA_IADA2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
423-453
499-543




A/DUCK/ALBERTA/60/76)


PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453




A/DUCK/ALBERTA/78/76)


PHEMA_IADA4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
418-478




A/DUCK/ALBERTA/35/76)


PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/DUCK/CZECHOSLOVAKIA/56)


PHEMA_IADE1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-55
402-453
506-533




A/DUCK/ENGLAND/1/56)


PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437




A/DUCK/HOKKAIDO/5/77)


PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437




A/DUCK/HOKKAIDO/8/80)


PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437




A/DUCK/HOKKAIDO/33/80)


PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437




A/DUCK/HOKKAIDO/7/82)


PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437




A/DUCK/HOKKAIDO/21/82)


PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437




A/DUCK/HOKKAIDO/9/85)


PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437




A/DUCK/HOKKAIDO/10/85)


PHEMA_IADIR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
415-445




A/DUCK/IRELAND/113/83)


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-56




A/DUCK/MEMPHIS/546/76)


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453




A/DUCK/MEMPHIS/928/74)


PHEMA_IADMA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
31-58




A/DUCK/MANITOBA/1/53)


PHEMA_IADNY
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-55




A/DUCK/NEW YORK/12/78)


PHEMA_LDNZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/DUCK/NEW ZEALAND/31/76)


PHEMA_IADU1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-55




A/DUCK/UKRAINE/1/60)


PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453




A/DUCK/UKRAINE/1/63)


PHEMA_IAEN6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
24-51




A/ENGLAND/878/69)


PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453




A/ENGLAND/321/77)


PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
177-221
384-442




A/FOWL PLAGUE VIRUS/ROSTOCK/34)


PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/GREY TEAL/AUSTRALIA/2/79)


PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
505-432




A/GULL/MARYLAND/704/77)


PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
504-531




A/GULL/ASTRAKHAN/227/84)


PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/ALGIERS/72)


PHEMA_IAHAR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/HARBIN/1/88)
29-56


PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457




A/EQUINE/CAMBRIDGE/1/63)


PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457




A/EQUINE/CAMBRIDGE/1/73)


PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457




A/EQUINE/C.DETROIT/1/64)


PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457




A/EQUINE/DETROIT/1/64)


PHEMA_IAHFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/FONTAINEBLEAU/76)


PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/KENTUCKY/2/86)


PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/KENTUCKY/1/87)


PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457




A/EQUINE/LEXINGTON/1/66)


PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457




A/EQUINE/LONDON/1416/73)


PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/MIAMI/1/63)


PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/NEW MARKET/76)


PHEMA_IAHNN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457




A/EQUINE/NEW MARKET/1/77)


PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457




A/EQUINE/PRAGUE/1/56)


PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/ROMANIA/80)


PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/SANTIAGO/1/85)


PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
194-221
388-457




A/EQUINE/SAO PAULO/1/76)


PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN)
29-56
194-221
388-457




A/EQUINE/SWITZERLAND/137/72


PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/TENNESSEE/5/86)


PHEMA_IAHTO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-455




A/EQUINE/TOKYO/71)


PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/URUGUAY/1/63)


PHEMA_IAJAP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
196-223




A/JAPAN/305/57)


PHEMA_IAKIE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
425-478




A/KIEV/59/79)


PHEMA_IALEN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
425-478




A/LENINRAD/54/1)


PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
380-450




A/MALLARD/ASTRAKHAN/244/82)


PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
385-455




A/MALLARD/ASTRAKHAN/263/82)


PHEMA_IAMAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453




A/MALLARD/NEW YORK/6874/78)


PHEMA_IAME1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453




A/MEMPHIS/1/71)


PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453




A/MEMPHIS/102/72)


PHEMA_IAME6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
24-51
371-437




A/MEMPHIS/6/86)


PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
31-58
382-441




A/MINK/SWEDEN/84)


PHEMA_IANT6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453




A/NT/60/68)


PHEMA_IAP1L
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
505-534




A/PILOT WHALE/MAINE/328/84)


PHEMA_IAPUE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
425-478




A/PUETRO RICO/8/34)


PHEMA_IAQU7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
24-51




A/QU/7/70)


PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/RUDDY TURNSTONE/NEW JERSEY/47/85)


PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/SEAL/MASSACHUSETTS/133/82)


PHEMA_IASH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
28-56
160-187
506-547




A/SHEARWATER/AUSTRALIA/72)


PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
119-146
384-443




A/STARLING/VICTORIA/5156/85)


PHEMA_IATA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56




A/TAIWAN/1/86)


PHEMA_IATK1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
415-445




A/TURKEY/IRELAND/1378/83)


PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/TURKEY/MINNESOTA/833/80)


PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
507-534




A/TURKEY/ONTARIO/7732/66)


PHEMA_IATKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
424-454
493-539




A/TURKEY/ONTARIO/6118/68)


PHEMA_IATKR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
32-62
194-221
381-422




A/TURKEY/OREGON/71)


PHEMA_IATKW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
419-449
500-536




A/TURKEY/WISCONSIN/1/66)


PHEMA_IATRA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-55




A/TERN/AUSTRALIA/G70C/75)


PHEMA_IAUDO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453




A/UDORN/307/72)


PHEMA_IAUSS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
29-56
425-478


PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
41-68
388-454




A/VICOTRIA/3/75)


PHEMA_IAWIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
424-477




A/WILSON-SMITH/33)


PHEMA_IAXIA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56




A/XIANFENG/3/89)


PHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
40-67
387-453




A/SWINE/COLORADO/1/77)


PHEMA_IAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437




A/SWINE/HONG KONG/81/78)


PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
371-437




A/SWINE/HONG KONG/126/82)


PHEMA_IAZIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
418-478
506-547




A/SWINE/INDIANA/1726/88)


PHEMA_IAZNJ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
418-478
506-547




A/SWINE/NEW JERSEY/11/76)


PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453




A/SWINE/UKKEL/1/84)


PHEMA_INBBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87)
400-431
439-483


PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAINB/BONN/43)
390-421
429-473


PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
398-429
437-481




B/ENGLAND/222/82)


PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
391-418
429-473




B/HONG KONG/8/73)


PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/LEE/40)
399-430
438-482


PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
389-420
428-472




B/MARYLAND/59)


PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
393-424
432-476




B/MEMPHIS/6/86)


PHEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
398-429
437-481




B/OREGON/5/80)


PHEMA_INBSI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
398-429
437-481




B/SINGAPORE/222/79)


PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
391-422
430-474




B/USSR/100/83)


PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
393-424
432-476




B/VICTORIA/3/85)


PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN
400-431
439-483




B/VICTORIA/2/87)


PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
495-571




C/CALIFORNIA/78)


PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
483-559




C/ENGLAND/892/83)


PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
483-559




C/GREAT LAKES/1167/54)


PHEMA_INCHY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
482-558




C/HYOGO/1/83)


PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN
496-572




C/JOHANNESBURG/1/66)


PHEMA_INCKY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
482-558




(STRAIN C/KYOTO/41/82)


PHEMA_INCM1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
482-558




(STRAIN C/MISSISSIPPI/80)


PHEMA_INCNA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
482-558




(STRAIN C/NARA/82)


PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559




(STRAIN C/PIG/BEIJING/10/81)


PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559




(STRAIN C/PIG/BEIJING/115/81)


PHEMA_INCP3
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559




(STRAIN C/PIG/BEIJING/439/82)


PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559




(STRAIN C/TAYLOR/1233/47)


PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS
483-559




(STRAIN C/YAMAGATA/1081)


PHEMA_NDVA
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91



NEURAMINIDASE
(STRAIN AUSTRALIA-VICTORIA/32)


PHEMA_NDVB
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91



NEURAMINIDASE
(STRAIN BEAUDETTE C/45)


PHEMA_NDVD
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91



NEURAMINIDASE
(STRAIN D26/76)


PHEMA_NDVH
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91



NEURAMINIDASE
(STRAIN B1-HITCHNER/47)


PHEMA_NDVI
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91



NEURAMINIDASE
(STRAIN ITALIEN/45)


PHEMA_NDVM
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91



NEURAMINIDASE
(STRAIN MIYADERA/51)


PHEMA_NDVQ
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91



NEURAMINIDASE
(STRAIN QUEENSLAND/66)


PHEMA_NDVTG
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91



NEURAMINIDASE
(STRAIN TEXAS G.B./48)


PHEMA_NDVU
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
64-91



NEURAMINIDASE
(STRAIN ULSTER/67)


PHEMA_PHODV
HEMAGGLUTININ-
PHOCINE DISTEMPER VIRUS
39-66
46-73



NEURAMINIDASE


PHEMA_PI1HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 1 VIRUS
79-110
366-393



NEURAMINIDASE
(STRAIN WASHINGTON/1957)


PHEMA_PI3B
HEMAGGLUTININ-
BOVINE PARAINFLUENZA 3 VIRUS
66-93



NEURAMINIDASE


PHEMA_PI3H4
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61



NEURAMINIDASE
(STRAIN NIH 47885)


PHEMA_PI3HA
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61



NEURAMINIDASE
(STRAIN AUS/124854/74)


PHEMA_PI3HT
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-76



NEURAMINIDASE
(STRAIN TEX/545/80)


PHEMA_PI3HU
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
23-70



NEURAMINIDASE
(STRAIN TEX/9305/82)


PHEMA_PI3HV
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61



NEURAMINIDASE
(STRAIN TEX/12677/83)


PHEMA_PI3HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61



NEURAMINIDASE
(STRAIN WASH/641/79)


PHEMA_PI3HX
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
27-61



NEURAMINIDASE
(STRAIN WASH/1511/73)


PHEMA_RACVI
HEMAGGLUTININ PRECURSOR
RACCOON POXVIRUS
166-214
256-283


PHEMA_SEND5
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
79-106



NEURAMINIDASE


PHEMA_SENDF
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN FUSHIMI)
79-106



NEURAMINIDASE


PHEMA_SENDH
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN HARRIS)
79-106



NEURAMINIDASE


PHEMA_SENDJ
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN HVJ)
79-106



NEURAMINIDASE


PHEMA_SENDZ
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN Z)
79-106



NEURAMINIDASE


PHEMA_SV41
HEMAGGLUTININ-
SIMIAN VIRUS 41
22-52
394-421



NEURAMINIDASE


PHEMA_VACCC
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
119-146
175-202
216-243


PHEMA_VACCI
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN IHD-J)
109-146
175-202
216-243


PHEMA_VACCT
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN TIAN TAN)
119-146
175-202
216-243


PHEMA_VACCV
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN WR)
109-146
175-202
215-242


PHEMA_VARV
HEMAGGLUTININ PRECURSOR
VARIOLA VIRUS
111-148
177-211
214-244


PHEX9_ADE02
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 2
100-134


PHEX9_ADE05
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 5
100-134


PHEX9_ADE07
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPES 3 and 7
97-127


PHEX9_ADE02
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 2
146-173
359-386
433-460


PHEX9_ADE05
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 5
348-375


PHEX9_ADE40
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 40
396-423


PHEX9_ADEB3
HEXON PROTEIN
BOVINE ADENOVIRUS TYPE 3
305-338


PHI38_COWPX
HEMORRHAGE-INDUCING
COWPOX VIRUS
28-55



38 KD PROTEIN


PHRG_COWPX
HOST RANGE PROTEIN
COWPOX VIRUS
462-489


PI196_ASFB7
LATE PROTEIN I196L
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
12-43


PI226_ASFB7
LATE PROTEIN I226R
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
113-147


PIBMP_CAMV4
INCLUSION BODY MATRIX
CAULIFLOWER MOSAIC VIRUS (STRAIN D4)
17-44



PROTEIN


PIBMP_CMAVD
INCLUSION BODY MATRIX
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
17-44



PROTEIN


PIBMP_CAMVP
INCLUSION BODY MATRIX
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
38-410



PROTEIN


PIBMP_CERV
INCLUSION BODY MATRIX
CARNATION ETCHED RING VIRUS
6-33



PROTEIN


PIBMP_FMVD
INCLUSION BODY MATRIX
FIGWORT MOSAIC VIRUS (STRAIN DXS)
372-407



PROTEIN


PIBMP_SOCMV
INCLUSION BODY MATRIX
SOYBEAN CHLOROTIC MOTTLE VIRUS
3-48
331-358



PROTEIN


PIC18_HCMVA
PROB PROC & TRANSPORT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
294-324



PRO UL56


PIC18_HSVSA
PROBABLE PROC & TRANSPORT
HERPESVIRUS SAIMIRI (STRAIN 11)
58-85
482-522



PRO


PIC18_MCMVS
PROB PROC & TRANSPORT
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
661-691



PRO


PIE63_HSV11
TRANSCRIPTIONAL REGULATOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
248-275



IE63


PIE68_HSV11
IMMEDIATE-EARLY PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
40-67



IE68


PIE68_HSVSA
IMMEDIATE-EARLY PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
48-78


PIR05_HCMVA
HYPOTHETICAL PROTEIN IRL5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
22-49


PIR12_HCMVA
HYPOTHETICAL PROTEIN IRL12
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-162


PIR13_HCMVA
HYPOTHETICAL PROTEIN IRL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
31-62


PKFES_FSVGA
TYROSINE KINASE TRANSF
FELINE SARCOMA VIRUS (STRAIN
106-150



PROTEIN FES
GARDNER-ARNSTEIN)


PKFGR_FSVGR
TYROSINE KINASE TRANSF
FELINE SARCOMA VIRUS (STRAIN
218-252



PROTEIN FGR
GRADNER-RASHEED)


PKFMS_FSVMD
FMS TYROSINE KINASE TRANSF
FELINE SARCOMA VIRUS (STRAIN
327-362



PROTEIN
MCDONOUGH)


PKFPS_FUJSV
TYROSINE KINASE TRANSF
FUJINAMI SARCOMA VIRUS
155-243
349-397



PROTEIN FPS


PKITH_AMEPV
THYMIDINE KINASE
AMSACTA MOOREI ENTOMOPOXVIRUS
47-84


PKITH_CAPVK
THYMIDINE KINASE
CAPRIPOXVIRUS (STRAIN KS-1)
41-68


PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
340-386


PKITH_ILTVT
THYMIDINE KINASE
INFECTIOUS LARYNGOTRACHEITIS VIRUS
334-361




(STRAIN THORNE V882)


PKR74_HSVI1
GENE 74 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
491-518


PKRB1_VACCC
30 KD PROTEIN KINASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
141-168



HOMOLOG


PKRB1_VACCV
30 KD PROTEIN KINASE
VACCINIA VIRUS (STRAIN WR)
141-168



HOMOLOG


PKRB2_VACCC
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN COPENHAGEN)
147-174


PKRB2_VACCV
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STAIN WR)
147-174


PKRF1_VARV
POSSIBLE PROTEIN KINASE F10
VARIOLA VIRUS
47-74


PNCAP_VHSVO
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71)
284-314


PKROS_AVISU
ROS TYROSINE KINASE
AVIAN SARCOMA VIRUS (STRAIN UR2)
111-138



TRANSF PROTEIN


PKRYK_AVIR3
TYROSINE KINASE TRANSF
AVIAN RETROVIRUS RPL30
22-49



PROTEIN RYK


PKYES_AVISY
TYROSINE KINASE TRANSF
AVIAN SARCOMA VIRUS (STRAIN Y73)
199-233



PROTEIN YES


PL100_ADE02
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
386-413


PL100_ADE05
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
386-413


PL100_ADE40
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 40
191-231


PL100_ADE41
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
206-233


PLMP1_EBV
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
148-175


PLMP1_EBVC
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN CAO)
148-175


PLMP1_EBVR
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN RAJI)
148-175


PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
294-321


PMCEL_SFVKA
MRNA CAPPING ENZYME,
SHOPE FIBROMA VIRUS (STRAIN KASZA)
54-156
289-316
497-524
622-656



LARGE SUBUNI


PMCEL_VACCC
MRNA CAPPING ENZYME,
VACCINIA VIRUS (STRAIN COPENHAGEN)
85-112
291-318
630-657



LARGE SUBUNI


PMCEL_VACCV
MRNA CAPPING ENZYME,
VACCINIA VIRUS (STRAIN WR)
85-112
291-318
630-657



LARGE SUBUNI


PMCEL_VARV
MRNA CAPPING ENZYME,
VARIOLA VIRUS
85-112
291-318
630-657



LARGE SUBUNI


PMCE_ASFB7
MRNA CAPPING ENZYME
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
279-313


PMOVP_CGMVS
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
170-197




(WATERMELON STRAIN W)


PMOVP_CGMVW
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
170-197




(WATERMELON STRAIN SH)


PMOVP_ORSV
MOVEMENT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
53-90


PMOVP_TOMVA
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LIIA)
46-80


PMOVP_TOMVL
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LII)
46-80


PMTC1_CHVN1
MODIFICATION METHYLASE
CHLORELLA VIRUS NC-1A
143-170
229-256



CVIBI


PMTC2_CHVP1
MODIFICATION METHYLASE

PARAMECIUM BURSARIA CHLORELLA VIRUS 1
4-31
130-172



CVIAII


PMYC_AVIM2
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS CMII
232-266
375-402


PMYC_AVIMC
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
232-267
376-403


PMYC_AVIMD
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HBI
232-267
376-403


PMYC_AVIME
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS MH2E21
239-268
377-404


PMYC_AVIOK
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS OK10
227-261
370-397


PMYC_FLV
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA VIRUS
393-420


PMYC_FLVTT
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA PROVIRUS FTT
393-420


PNCAP_BEV
NUCLEOCAPSID PROTEIN
BERNE VIRUS
49-76
129-156


PNCAP_BUNLC
NUCLEOCAPSID PROTEIN
BUNYAVIRUS LA CROSSE
85-112


PNCAP_BUNSH
NUCLEOCAPSID PROTEIN
BUNYAVIRUS SNOWSHOE HARE
96-123


PNCAP_BUNYW
NUCLEOCAPSID PROTEIN
BUNYAMWERA VIRUS
48-75
189-220


PNCAP_CCHFV
NUCLEOCAPSID PROTEIN
CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS
223-271




(ISOLATE C68031)


PNCAP_CDVO
NUCLEOCAPSID PROTEIN
CANINE DISTEMPER VIRUS (STRAIN
140-174




ONDERSTEPOORT)


PNCAP_CHAV
NUCLEOCAPSID PROTEIN
CHANDIPURA VIRUS (STRAIN 1653514)
40-74


PNCAP_CVCAE
NUCLEOCAPSID PROTEIN
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
191-227


PNCAP_CVPPU
NUCLEOCAPSID PROTEIN
PORCINE TRANSMISSIBLE GASTROENTERITIS
191-227




CORONAVIRUS (STRAIN PURD


PNCAP_CVPR8
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS
191-227




(STRAIN 86/137004/BRITISH ISOLAT


PNCAP_CVPRM
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS
191-227




(STRAIN RM4)


PNCAP_DUGBV
NUCLEOCAPSID PROTEIN
DUGBE VIRUS
238-265


PNCAP_FIPV
NUCLEOCAPSID PROTEIN
FELINE INFECTIOUS PERITONITIS VIRUS
182-209




(STRAIN 79-1146)


PNCAP_HAZVJ
NUCLEOCAPSID PROTEIN
HAZARA VIRUS (ISOLATE JC280)
6-33
256-283


PNCAP_HRSV1
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
4-31
74-108
112-141




(SUBGROUP B/STRAIN 18537)


PNCAP_HRSVA
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
4-31




(STRAIN A2)


PNCAP_LASSG
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN GA391)
64-99
147-174


PNCAP_LASSJ
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN JOSIAH)
64-99
467-504


PNCAP_LYCVA
NUCLEOCAPSID PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
64-97




(STRAIN ARMSTRONG)


PNCAP_MAGV
NUCLEOCAPSID PROTEIN
MAGUARI VIRUS
41-68
192-219


PNCAP_MOPEI
NUCLEOCAPSID PROTEIN
MOPEIA VIRUS
64-99


PNCAP_PI1HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
377-404
455-482


PNCAP_PI1HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
377-404
444-488




(STRAIN WASHINGTON/1957)


PNCAP_PI3H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
376-403




(STRAIN N1H) 47885


PNCAP_PTPV
NUCLEOCAPSID PROTEIN
PUNTA TORO PHLEBOVIRUS
3-30


PNCAP_PUUMH
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN HALLNAS B1)
2-29


PNCAP_PUUMS
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN SOTKAMO)
2-29


PNCAP_PVM
NUCLEOCAPSID PROTEIN
PNEUMONIA VIRUS OF MICE
93-120


PNCAP_RABVA
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN AVO1)
133-167


PNCAP_RABVP
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN PV)
133-167


PNCAP_RABVS
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN SAD B19)
133-167


PNCAP_SEND5
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
363-404


PNCAP_SENDE
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN ENDERS)
363-404


PNCAP_SENDZ
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z)
363-404


PNCAP_SFSV
NUCLEOCAPSID PROTEIN
SANDFLY FEVER SICILIAN VIRUS
4-31


PNCAP_SV41
NUCLEOCAPSID PROTEIN
SIMIAN VIRUS 41
507-534


PNCAP_TACV
NUCLEOCAPSID PROTEIN
TACARIBE VIRUS
50-77


PNCAP_TOSV
NUCLEOCAPSID PROTEIN
TOSCANA VIRUS
6-33


PNCAP_UUK
NUCLEOCAPSID PROTEIN
UUKUNIEMI VIRUS
68-102


PNCAP_VHSV0
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
284-314




(STRAIN 07-71)


PNCAP_VHSVM
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS
149-176
284-314




(STRAIN MAKAH)


PNCAP_VSVIG
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE)
56-83




INDIANA/STRAIN GLASGOW


PNCAP_VSVJO
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE
67-94
338-365




NEW) JERSEY/STRAIN OGDEN


PNCAP_VSVSJ
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
56-83




(STRAIN SAN JUAN)


PNEF_HV1EL
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
81-119




(ELI ISOLATE)


PNEF_HV1ND
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
81-119




(NDK ISOLATE)


PNEF_HV1Z6
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
82-124




(ZAIRE 6 ISOLATE)


PNEF_SIVAI
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
96-137




(ISOLATE AGM/CLONE GRI-1)


PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
47-81




A/BLACK DUCK/AUSTRALIA/702/78)


PNRAM_IACAO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
33-64




A/CAMEL/MONGOLIA/82


PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
16-43
50-91


PNRAM_IADA1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
51-81




A/DUCK/ALBERTA/28/76)


PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
21-48




A/DUCK/GERMANY/49)


PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
10-48
52-80
197-224




A/FOWL PLAGUE VIRUS/WEYBRIDGE)


PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
197-224
386-413




A/EQUINE/COR/16/74)


PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
5-44
46-76
364-400




A/EQUINE/KENTUCKY/1/81)


PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
50-81


PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
50-81




A/LENINGRAD/54/1)


PNRAM_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
16-43
50-81




A/MEMPHIS/1/71H-A/BELLAMY/42N)


PNRAM_IAPAR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
15-43
50-81




A/PARROT/ULSTER/73)


PNRAM_IAPUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
16-43




A/PUERTO RICO/8/34)


PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
49-88




A/RUDDY TURNSTONE/NEW JERSEY/60/85)


PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
49-82




A/TERN/AUSTRALIA/G70C/75)


PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
50-81


PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
49-88




A/WHALE/MAINE/1/84)


PNRAM_IAWIL
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
16-43




A/WILSON-SMITH/33)


PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/LEE/40)
4-35


PNS1_SIDEV
PROB NONSTRUC PRO
BOMBYX DENSONUCLEOSIS VIRUS
283-310



PRECURSOR


PNS2_SIDEV
PROB NONSTRUC PRO
BOMBYX DENSONUCLEOSIS VIRUS
42-69



PRECURSOR


PNSS_INSVN
NON-STRUCTURAL PROTEIN
IMPATIENS NECROTIC SPOT VIRUS
95-122




(STRAIN NL-07)


PNSS_TSWVB
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
5-32
432-462




(BRAZILIAN ISOLATE CPNH1/BR-01)


PNSS_TSWVL
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS (STRAIN L3)
5-32


PNTP1_AMEPV
NUCLEOSIDE TRIPHOS-
AMSACTA MOOREI ENTOMOPOXVIRUS
28-69



PHATASE I


PNTP1_CBEPV
NUCLEOSIDE TRIPHOS-
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
122-166
347-374
524-551



PHATASE I


PNTP1_VACCC
NUCLEOSIDE TRIPHOS-
VACCINIA VIRUS (STRAIN COPENHAGEN)
65-92
394-421
514-587



PHATASE I


PNTP1_VACCV
NUCLEOSIDE TRIPHOS-
VACCINIA VIRUS (STRAIN WR)
65-92
394-421
514-587



PHATASE I


PNTP1_VARV
NUCLEOSIDE TRIPHOS-
VARIOLA VIRUS
300-327
420-447
455-493



PHATASE I


PP100_HSV6U
MAJOR ANTIGENIC STRUCTL
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
81-108
189-216
688-715
785-812



PROTEIN
UGANDA-1102)


PPAP1_VACCC
POLY(A) POL CATALYTIC
VACCINIA VIRUS (STRAIN COPENHAGEN)
88-115



SUBUNIT


PPAP1_VACCV
POLY(A) POL CATALYTIC
VACCINIA VIRUS (STRAIN WR)
88-115



SUBUNIT


PPAP1_VARV
POLY(A) POL CATALYTIC
VARIOLA VIRUS
88-115



SUBUNIT


PPAP2_CAPVK
POLY(A) POL REG SUBUNIT
CARPRIPOXVIRUS (STAIN KS-1)
118-145


PPAP2_FOWPV
POLY(A) POL REG SUBUNIT
FOWLPOX VIRUS
27-54


PPE12_NPVAC
12.1 KD PROTEIN IN PE

AUTOGRAPHA CALIFORNICA NUCLEAR
61-105



5′REGION
POLYHEDROSIS VIRUS


PPE12_NPVOP
11.5 KD PROTEIN IN P26

ORGYIA PSEUDOTSUGATA MULTICAPSID
61-95



5′REGION
POLYHEDROSIS VIRUS


PPE38_NPVAC
MAJOR IMMEDIATE EARLY

AUTOGRAPHA CALIFORNICA NUCLEAR
204-248



PROTEIN
POLYHEDROSIS VIRUS


PPE48_NPVAC
48.3 KD IN PE-P26

AUTOGRAPHA CALIFORNICA NUCLEAR
4-38
51-78



INTERGENIC REGION
POLYHEDROSIS VIRUS


PPEN3_ADEGX
PENTON PROTEIN
AVIAN ADENOVIRUS GAL10 (STRAIN SA2)
96-123


PPOL1_BAYMG
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
1272-
1775-
2236-




(GERMAN ISOLATE)
1299
1802
2263


PPOL1_BAYMJ
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
1774-
2234-




(JAPANESE STRAIN II-1)
1801
2261


PPOL1_GCMV
RNA1 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME
481-508
1909-




MOSAIC VIRUS

1941


PPOL1_GFLV
RNA1 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
170-197
636-677
958-985
1161-








1195


PPOL1_TBRVS
RNA1 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
1096-





1123


PPOL2_BAYMG
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
240-281
801-828




(GERMAN ISOLATE)


PPOL2_BAYMJ
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
240-267
801-828




(JAPANESE STRAIN II-1)


PPOL2_GCMV
RNA2 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS
11-38


PPOL2_GFLV
RNA2 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
549-576


PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS
982-




(ISOLATE RASPBERRY)
1009


PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27)
17-44
1030-
1145-






1057
1172


PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL)
629-660
1082-
1303-
2233-
2476-
2609-
3613-






1112
1330
2261
2503
2636
3642


PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1)
1303-
2143-
2519-
2802-
3523-





1333
2171
2546
2829
3550


PPOLG_BYMV
GENOME POLYPROTEIN
BEAN YELLOW MOSAIC VIRUS
96-123


PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIE VIRUS A21 (STRAIN COE)
7-43
664-694
1062-
1900-







1099
1930


PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIE VIRUS A9 (STRAIN GRIGGS)
1040-





1076


PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIE VIRUS B1
645-672
841-868
1021-







1057


PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIE VIRUS B3
1024-
1881-





1060
1908


PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIE VIRUS B4
644-673
1022-






1058


PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIE VIRUS B5
1024-





1060


PPOLG_CYVV
GENOME POLYPROTEIN
CLOVER YELLOW VEIN VIRUS
120-154


PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE
1858-
2890-
2989-




S275/90)
1885
2935
3016


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
1544-
1858-
2908-
2982-
3117-





1571
1885
2935
3016
3147


PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53)
1544-
1858-
2485-
2908-
2982-
3117-





1571
1885
2519
2935
3016
3147


PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMAICA)
1544-
1858-
2908-
3117-
3346-





1571
1885
2935
3147
3373


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR159/S1)
1544-
1858-
2905-
2979-
3114-
3343-





1571
1885
2932
3013
3144
3370


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974)
1134-
1448-





1161
1475


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
837-864
1542-
1857-
2494-
2980-
3345-






1569
1884
2521
3014
3372


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
2885-
2977-
3342-





2930
3011
3369


PPOLG_EC11G
GENOME POLYPROTEIN
ECHOVIRUS 11 (STRAIN GREGORY)
213-249


PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
70-018
1484-
1522-






1518
1563


PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
70-97
1486-
1524-




(STRAIN EMC-B NONDIABETOGENIC)

1520
1565


PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
70-97
1486-
1524-




(STRAIN EMC-D DIABETOGENIC)

1520
1565


PPOLG_ENMG3
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
70-108




(STRAIN 37A)


PPOLG_ENMGO
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
3-41


PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
302-329
1119-




(STRAIN A10-61)

1146


PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
301-328
1119-




(STRAIN A12)

1146


PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
1119-




(STRAINS O1K AND O1BFS)
1146


PPOLG_FMDVS
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS
101-128




(STRAIN C1-SANTA PAU [C-58])


PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
702-729


PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT)
699-726
1195-
1303-
1434-
3068-
3406-






1232
1333
1461
3095
3440


PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN BRESCIA)
699-726
1195-
3068-
3406-
3532-






1232
3095
3440
3559


PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK)
702-729
1045-






1072


PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H)
702-729
1045-






1072


PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6)
374-401
2089-






2116


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8)
1049-
2089-





1076
2116


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
378-405
702-729
1045-







1072


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-JT)
702-729
1045-






1072


PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE TAIWAN)
702-729
1045-






1072


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
203-237
1021-
1117-
1454-






1048
1149
1481


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
203-237
1021-
1117-
1454-






1048
1149
1481


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
203-237
1021-
1117-
1454-






1048
1149
1481


PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN CR326)
203-237


PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN GA76)
182-216


PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
203-237
1021-
1103-






1048
1149


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
203-237
1021-
1103-






1048
1149


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
203-237
1021-
1103-






1048
1149


PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27)
207-241
1025-
1115-






1052
1192


PPOLG_HPAVT
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN CY-145)
203-237


PPOLG_HRV14
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14
17-44
559-586
652-679
1877-








1904


PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B
1132-
1855-





1159
1882


PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2
1125-
1552-





1152
1593


PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89
883-910
1141-
1566-
1862-






1168
1607
1889


PPOLG_HUEV7
GENOME POLYPROTEIN
HUMAN ENTEROVIRUS 70 (STRAIN J670/71)
876-910


PPOLG_IBDVO
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-277




(STRAIN OH)


PPOLG_JAEV1
GENOME PPOLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14)
214-248
983-
2796-






1010
2823


PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V)
214-248
983-
2796-






1010
2823


PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN
214-248
983-
2796-




JAOARS982)

1010
2823


PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALAITS VIRUS (STRAIN
141-175
911-938




NAKAYAMA)


PPOLG_KUNJM
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
980-1007


PPOLG_LANVT
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
431-465
1634-






1661


PPOLG_LANVY
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN YELANTSEV)
431-465


PPOLG_LIV
GENOME POLYPROTEIN
LOUPING ILL VIRUS
431-465


PPOLG_LIVSB
GENOME POLYPROTEIN
LOUPING ILL VIRUS (STRAIN SB 526)
151-185


PPOLG_MCFA
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT
671-698
3056-
3303-






3083
3330


PPOLG_MDMV
GENOME POLYPROTEIN
MAIZE DWARF MOSAIC VIRUS
10-37


PPOLG_MVEV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
212-256


PPOLG_OMV
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
24-51
946-973


PPOLG_PEMVC
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE)
377-404
704-738
831-858
900-927
1167-
1485-
1787-
2433-









1201
1512
1814
2464


PPOLG_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1060-
1901-





1100
1931


PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
670-697
1063-
1903-






1101
1933


PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
1061-
1901-





1099
1931


PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
1061-
1901-





1099
1931


PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAIN 23127)
1060-
1900-





1098
1930


PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAINS P3/LEON/37
1060-
1900-




AND P3/LEON N12A[1]B)
1098
1930


PPOLG_PPVD
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D)
921-948
1498-
2771-





948
1525
2798


PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN EL AMAR)
1146-





1187


PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT)
920-947
1497-
2770-






1524
2800


PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC)
920-947
1497-
2770-






1524
2797


PPOLG_PRSVH
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA)
500-527


PPOLG_PRSVP
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA 5-1)
391-418


PPOLG_PRSVW
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN W)
489-516


PPOLG_PSBMV
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPD1)
271-315
1132-
1510-






1177
1537


PPOLG_PVYC
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN C) (PVY)
433-460
701-735


PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN)
218-245
433-460
701-735
1486-
1777-








1513
1811


PPOLG_PVYN
GENOME POLYPROTEIN
POTATA VIRUS Y (STRAIN N)
433-460
701-735
1486-
1777-







1513
1811


PPOLG_PVYO
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN O)
433-460
701-735


PPOLG_PYFV1
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121)
1124-
2707-





1151
2734


PPOLG_SUMVS
GENOME POLYPROTEIN
SUGARCANE MOSAIC VIRUS (STRAIN SC)
10-37


PPOLG_SVDVH
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
1024-




(STRAIN H/3 ′76)
1060


PPOLG_SVDVU
GENOME POLYPROTEIN
1024-1060


PPOLG_TBEVS
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
87-121
234-272
1632-
2265-
2909-




(STRAIN SOFJIN)


1661
2292
2936


PPOLG_TBEVW
GENOME POLYPROTEIN
BORNE ENCEPHALATIS VIRUS
1632-




(WESTERN SUBTYPE)
1659


PPOLG_TEV
GENOME POLYPROTEIN
TOBACCO ETCH VIRUS
845-872
1148-
1416-
1773-






1175
1443
1800


PPOLG_TMEVB
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS
79-117
200-227




(STRAIN BEAN 8386)


PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS
90-117
200-227




(STRAIN DA)


PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS
90-117
200-227




(STRAIN GDVII)


PPOLG_TUMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS
232-262
773-800


PPOLG_TVMV
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS
406-433
670-704
2708-







2742


PPOLG_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
202-229


PPOLG_WNV
GENOME POLYPROTEIN
WEST NILE VIRUS
210-254
3385-






3412


PPOLG_YEFV1
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
436-463


PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204)
436-463


PPOLG_ZYMV
GENOME POLYPROTEIN
ZUCCHINI YELLOW MOSAIC VIRUS
69-96


PPOLH_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1063-
1903-





1101
1933


PPOLN_EEVT
NON-STRUCTURAL
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1402-
1894-



POLYPROTEIN
(STRAIN TRINIDAD DONKEY)
1467
1921


PPOLN_FCVC6
NON-STRUCTURAL
FELINE CALICIVRUS (STRAIN CFI/68 FIV)
445-472



POLYPROTEIN


PPOLN_FCVF9
NON-STRUCTURAL
FELINE CALICIVIRUS (STRAIN F9)
1034-



POLYPROTEIN

1061


PPOLN_HEVBU
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN BURMA)
219-246
349-376



POLYPROTEIN


PPOLN_HEVME
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN MEXICO)
219-246
349-376



POLYPROTEIN


PPOLN_HEVMY
N-STRUCTURAL
HEPATITIS E VIRUS (STRAIN MYANMAR)
219-246
349-376



POLYPROTEIN


PPOLN_HEVPA
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN PAKISTAN)
218-245
348-375



POLYPROTEIN


PPOLN_MIDDV
NON-STRUCTURAL
MIDDELBURG VIRUS
955-982



POLYPROTEIN


PPOLN_ONNVG
NON-STRUCTURAL
O′NYONG-NYONG VIRUS (STRAIN GULU)
2453-



POLYPROTEIN

2480


PPOLN_RHDV
NON-STRUCTURAL
RABBIT HEMORRHAGIC DISEASE VIRUS
313-347
1657-



POLYPROTEIN


1684


PPOLN_RRVN
NON-STRUCTURAL
ROSS RIVER VIRUS (STRAIN NB5092)
1057-
1477-
2418-



POLYPROTEIN

1084
1504
2445


PPOLN_RRVT
NON-STRUCTURAL
ROSS RIVER VIRUS (STRAIN T48)
146-173
1087-



POLYPROTEIN


1114


PPOLN_RUBVT
NON-STRUCTURAL
RUBELLA VIRUS (STRAIN THERIEN)
2060-



POLYPROTEIN

2087


PPOLN_SFV
NON-STRUCTURAL
SEMLIKI FOREST VIRUS
1154-



POLYPROTEIN

1181


PPOLN_SINDO
NON-STRUCTURAL
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN
936-970



POLYPROTEIN
EDSBYN 82-5)


PPOLN_WEEV
NON-STRUCTURAL
WESTERN EQUINE ENCEPHALITIS VIRUS
4-31



POLYPROTEIN


PPOLS_IBDV5
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258




(STRAIN 52/70)


PPOLS_IBDVA
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258




(STRAIN AUSTRALIAN 002-73)


PPOLS_IBDVC
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258




(STRAIN CU-1)


PPOLS_IBDVE
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258




(STRAIN E)


PPOLS_IBDVP
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
212-239




(STRAIN PBG-98)


PPOLS_IBDVS
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
231-258




(STRAIN STC)


PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
O′NYONG-NYONG VIRUS (STRAIN GULU)
356-383


PPOLS_RRVN
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092)
939-973


PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
939-973


PPOLS_SINDO
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN
1138-




EDSBYN 82-5)
1165


PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
1138-





1165


PPOLS_WEEV
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
920-947


PPOL_BAEVM
POL POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
675-706
715-742


PPOL_CAEVC
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
886-924




(STRAIN CORK)


PPOL_COYMV
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS
333-360
838-865
1075-
1178-
1313-







1102
1205
1347


PPOL_EIAV9
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369)
472-505
826-853


PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22)
472-505
826-853


PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
471-504
825-852




(ISOLATE WYOMING)


PPOL_FENV1
POL POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECE1
532-599
627-654


PPOL_FIVPE
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
442-473




(ISOLATE PETALUMA)


PPOL_FMVD
ENZYMATIC POLYPROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
403-430


PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
535-562
676-703


PPOL_HTL1A
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK)
674-712


PPOL_HTL1C
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBBEAN ISOLATE)
674-712


PPOL_HV1A2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
218-245
620-661




(ARV2/SF2 ISOLATE)


PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
230-257
637-673




(BH10 ISOLATE)


PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
230-257
632-673




(BH5 ISOLATE)


PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
230-257
632-673




(BRU ISOLATE)


PPOL_HV1EL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
624-660




(ELI ISOLATE)


PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
218-245
620-661
921-951




(HXB2 ISOLATE)


PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
222-249
624-665




(JRCSF ISOLATE)


PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
476-510
619-660




(MAL ISOLATE)


PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
221-248
623-664




(MN ISOLATE)


PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
218-245
625-661




(NEW YORK-5 ISOLATE)


PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
624-660




(NDK ISOLATE)


PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
218-245
620-661




(OYI ISOLATE)


PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
230-257
637-673




(PV22 ISOLATE)


PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
619-660




(RF/HAT ISOLATE)


PPOL_HV1U4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
513-540
619-660




(STRAIN UGANDAN/IOSLATE U


PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
217-244
619-660




(Z2/CDC-Z34 ISOLATE)


PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
491-582




(ISOLATE BEN)


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
471-562




(ISOLATE CAM2)


PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
509-600




(ISOLATE D194)


PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
491-568




(ISOLATE D205,7)


PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
471-562




(ISOLATE GHANA-1)


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
471-529




(ISOLATE NIH-Z)


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
472-563




(ISOLATE ROD)


PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
473-562




(ISOLATE SBLISY)


PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
491-582




(ISOLATE ST)


PPOL_IPHA
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
200-227
354-381
461-499


PPOL_IPMA
PUTATIVE POL POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
211-238
302-329
400-427


PPOL_IPMAI
PROBABLE POL POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
130-157
221-248


PPOL_JSRV
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
204-231


PPOL_MLVAK
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
453-480


PPOL_MLVAV
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
805-832


PPOL_MLVRD
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
716-743
805-832


PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
101-128
190-217




(STRAIN KAPLAN)


PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
574-612
670-697


PPOL_OMVVS
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
67-94
471-505
873-900


PPOL_RSVP
POL POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
797-824


PPOL_RTBV
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
7-44
59-93
176-203
202-229
410-437
447-476
1022-











1049


PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
7-44
59-93
176-203
202-229
410-437
447-476
1022-




(ISOLATE PHILIPPINES)






1049


PPOL_SFV1
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
427-454


PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
431-458
547-574
637-671




(AGM155 ISOLATE)


PPOL_SIVA2
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
45-72




(AGM266 ISOLATE)


PPOL_SIVA3
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
71-98




(AGM385 ISOLATE)


PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
436-463
482-516
642-669




(AGM3 ISOLATE)


PPOL_SIVAI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
478-515




(ISOLATE AGM/CLONE GR1-1)


PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
657-691




(TYO-1 ISOLATE)


PPOL_SIVCZ
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
242-269
626-685




(SIV(CPZ))


PPOL_SIVGB
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
227-254
636-670




(ISOLATE GB1)


PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
533-560




(MM142-83 ISOLATE)


PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
533-560




(K6W ISOLATE)


PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
496-523




(F236/SMH4 ISOLATE)


PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
499-526




(PBJ/BC13 ISOLATE)


PPOL_SMRVH
POL POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
601-628


PPOL_SOCMV
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
268-295
348-419


PPOL_SRV1
POL POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
578-612
670-697


PPOL_VILV
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
490-524
881-919


PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS1)
89-116
490-524
881-919


PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2)
490-524
881-919


PPR73_MMTVB
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
288-315


PPR73_MMTVC
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
45-79


PPR73_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
167-201


PPYHD_CPVBM
POLYHEDRIN PRECURSOR
BOMBYX MORI CYTOPLASMIC POLYHEDROSIS
37-71




VIRUS


PPYHD_NPVAC
POLYHEDRIN

AUTOGRAPHA CALIFORNICA NUCLEAR
13-47




POLYHEDROSIS VIRUS


PPYHD_NPVAS
POLYHEDRIN
AGROTIS SEGETUM NUCLEAR POLYHEDROSIS
14-48
201-228




VIRUS


PPYHD_NPVBM
POLYHEDRIN
BOMBYX MORI NUCLEAR POLYDEDROSIS VIRUS
12-46


PPYHD_NPVBS
POLYHEDRIN

BUZURA SUPPRESSARIA NUCLEAR POLYHEDROSIS
14-48




VIRUS


PPYHD_NPVHC
POLYHEDRIN

HYPHANTRIA CUNEA
NUCLEAR POLYHEDROSIS

13-40




VIRUS


PPYHD_NPVLD
POLYHEDRIN
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
14-48




POLYHEDROSIS VIRUS


PPYHD_NPVMB
POLYHEDRIN

MAMESTRA BRASSICAE NUCLEAR POLYHEDROSIS
14-48




VIRUS


PPYHD_NPVOP
POLYHEDRIN

ORGYIA PSEUDOTSUGATA
MULTICAPSID

13-47




POLYHEDROSIS VIRUS


PPYHD_NPVOS
POLYHEDRIN

ORGYIA PSEUDOTSUGATA SINGLE CAPSID
14-48




NUCLEAR POLYHEDROSIS VIRUS


PPYHD_NPVPF
POLYHEDRIN

PANOLIS FLAMMEA MULTIPLE NUCLEOCAPSID
14-48




POLYHEDROSIS VIRUS


PPYHD_NPVSE
POLYHEDRIN

SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS
14-48




VIRUS (STRAIN US)


PPYHD_NPVSF
POLYHEDRIN

SPODOPTERA FRUGIPERDA NUCLEAR
14-48




POLYHEDROSIS VIRUS


PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
41-68




(TYO-1 ISOLATE)


PREV_VILV
REV PROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
22-62


PRIR1_ASFM2
RIBONUC-DIPHOSPH REDUCT
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI
7-41
88-119
363-390



LARGE CHA
LH 20/1)


PRIR1_HCMVA
RIBONUC-DIPHOSPH REDUCT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
622-649



LARGE CHA


PRIR1_HSVEB
RIBONUC-DIPHOSPH REDUCT
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
75-102



LARGE CHA


PRIR1_HSVSA
RIBONUC-DIPHOSPH REDUCT
HERPESVIRUS SAIMIRI (STRAIN 11)
324-351



LARGE CHA


PRIR1_VACCC
RIBONUC-DIPHOSPH REDUCT
VACCINIA VIRUS (STRAIN COPENHAGEN)
367-401



LARGE CHA


PRIR1_VACCV
RIBONUC-DIPHOSPH REDUCT
VACCINIA VIRUS (STRAIN WR)
367-401



LARGE CHA


PRIR1_VARV
RIBONUC-DIPHOSPH REDUCT
VARIOLA VIRUS
367-401



LARGE CHA


PRIR1_VZVD
RIBONUC-DIPHOSPH REDUCT
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
119-146



LARGE CHA


PRIR1_HSVB3
RIBONUC-DIPHOSPH REDUCT
BOVINE HERPESVIRUS TYPE 1 (STRAIN 34)
90-117



SMALL CHA


PRP94_VACCV
RNA-POL-ASSOC TRANS SPEC
VACCINIA VIRUS (STRAIN WR)
41-68
513-540



FACTOR


PRP94_VARV
RNA-POL-ASSOC TRANS SPEC
VARIOLA VIRUS
41-75
77-104
513-540



FACTOR


PRPO1_VACCC
DNA-DIRECTED RNA POL
VACCINIA VIRUS (STRAIN COPENHAGEN)
237-264
587-616
810-837
961-992



147 KD


PRPO1_VACCV
DNA-DIRECTED RNA POL
VACCINIA VIRUS (STRAIN WR)
237-264
587-616
810-837
961-992
1011-



147 KD





1038


PRPO1_VARV
DNA-DIRECTED RNA POL
VARIOLA VIRUS
237-264
587-616
810-837
961-992



147 KD


PRPO2_CAPVK
DNA-DIRECTED RNA POL
CAPRIPOXVIRUS (STRAIN KS-1)
19-65
114-155



132 KD


PRPO2_COWPX
DNA-DIRECTED RNA POL
COWPOX VIRUS
211-241
481-509



132 KD


PRPO2_VACCV
DNA-DIRECTED RNA POL
VACCINIA VIRUS (STRAIN WR)
211-241
481-509



132 KD


PRPO2_VARV
DNA-DIRECTED RNA POL
VARIOLA VIRUS
211-241
481-509



132 KD


PRPO4_CAPVK
DNA-DIRECTED RNA POL 35 KD
CAPRIPOXVIRUS (STRAIN KS-1)
36-63


PRPO7_VACCV
DNA-DIRECTED RNA POL 19 KD
VACCINIA VIRUS (STRAIN WR)
8-35
43-70


PRPO7_VARV
DNA-DIRECTED RNA POL 19 KD
VARIOLA VIRUS
43-70


PRPOA_LELV
RNA-DIRECTED RNA
LELYSTAD VIRUS
1533-



POLYMERASE

1560


PRPOL_EAV
RNA-DIRECTED RNA
EQUINE ARTERITIS VIRUS
888-915
1639-



POLYMERASE


1673


PRRP1_IAKOR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/KOREA/426/68)
575-602



POL SUB P1


PRRP2_IAANN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
119-146



POL SUB P2


PRRP2_IADH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
119-146



POL SUB P2
A/DUCK/HOKKAIDO/8/80)


PRRP2_IAFPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/FOWL
119-146



POL SUB P2
PLAGUE VIRUS/ROSTOCK/34)


PRRP2_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
119-146



POL SUB P2
A/GULL/MARYLAND/704/77)


PRRP2_IAHLO
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/EQUINE/LONDON/1416/73)


PRRP2_IAHTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/EQUINE/TENNESSEE/5/86)


PRRP2_IAKOR
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/KOREA/426/68)


PRRP2_IALE1
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/LENINGRAD/134/57)


PRRP2_IALE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/LENINGRAD/134/17/57)


PRRP2_IAMAN
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/MALLARD/NEW YORK/6750/78)


PRRP2_IANT6
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/NT/60/68)


PRRP2_IAP10
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/PINTAIL/ALBERTA/119/79)


PRRP2_IAPUE
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/PUERTO RICO/8/34)


PRRP2_IARUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/RUDDY TURNSTONE/NEW JERSEY/47/85)


PRRP2_IASIN
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/SINGAPORE/1/57)


PRRP2_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/TURKEY/MINNESOTA/833/80)


PRRP2_IAVI7
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146
327-354



POL SUB P2
(STRAIN A/VICTORIA/3/75)


PRRP2_IAWIL
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/WILSON-SMITH/33)


PRRP2_IAZH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/SWINE/HONG KONG/81/78)


PRRP2_IAZH3
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/SWINE/HONG KONG/126/82)


PRRP2_IAZI1
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/SWINE/IOWA/15/30)


PRRP2_IAZTF
RNA-DIRECTED RNA
INFLUENZA A VIRUS
119-146



POL SUB P2
(STRAIN A/SWINE/TENNESSEE/26/77)


PRRP2_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS
157-194



POL SUB P2
(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTED])


PRRP2_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS
164-194



POL SUB P2
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE)


PRRP2_INBS1
RNA-DIRECTED RNA
INFLUENZA B VIRUS
157-194



POL SUB P2
(STRAIN B/SINGAPORE/222/79)


PRRP3_IABUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS
537-567



POL SUB P3
(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)


PRRP3_IACH1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83
331-358



POL SUB P3


PRRP3_IAHPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS
331-361
480-507



POL SUB P3
(STRAIN A/EQUINE/PRAGUE/1/56)


PRRP3_IAZTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS
487-514



POL SUB P3
(STRAIN A/SWINE/TENNESSEE/24/77)


PRRP3_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS
2-33
472-509



POL SUB P3
(STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTED])


PRRP3_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS
2-33
472-509



POL SUB P3
(STRAIN B/ANN ARBOR/1/66 [WILD-TYPE)


PRRP3_INCBE
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85)
509-536



POL SUB P3


PRRP3_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN C/JJ/50)
509-536



POL SUB P3


PRRP3_THOGV
RNA-DIRECTED RNA
THOGOTO VIRUS
149-176
358-385



POL SUB P3


PRRPA_CVH22
RNA-DIRECTED RNA
HUMAN CORONA VIRUS (STRAIN 229E)
516-543
724-751
1971-
3781-



POLYMERASE



2008
3811


PRRPA_CVMJH
RNA-DIRECTED RNA
MURINE CORONAVIRUS MHV (STRAIN JHM)
624-651
4326-



POLYMERASE


4353


PRRPB_BEV
RNA-DIRECTED RNA
BERNE VIRUS
27-54
557-584
943-984



POLYMERASE


PRRPB_CVMA5
RNA-DIRECTED RNA
MURINE CORONAVIRUS MHV (STRAIN A59)
885-915
1129-



POLYMERASE


1170


PRRPB_CVMJH
RNA-DIRECTED RNA
MURINE CORONAVIRUS MHV (STRAIN JHM)
885-915
1129-



POLYMERASE


1170


PRRPB_CVPFS
RNA-DIRECTED RNA
PORCINE TRANSMISSIBLE GASTROENTERITIS
20-47
353-380
385-412



POLYMERASE
CORONAVIRUS (STRAIN FS722


PRRPB_IBVB
RNA-DIRECTED RNA
AVIAN INFECTIOUS BRONCHITIS VIRUS
1510-
2296-
2547-



POLYMERASE
(STRAIN BEAUDETTE)
1547
2331
2574


PRRPB_IBVK
RNA-DIRECTED RNA
AVIAN INFECTIOUS BRONCHITIS VIRUS
165-200
416-443



POLYMERASE
(STRAIN KB8523)


PRRPL_BTV10
RNA-DIRECTED RNA
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
1032-



POLYMERASE

1059


PRRPL_BUNYW
RNA POLYMERASE
BUNYAMWERA VIRUS
80-114
317-350
1802-
1892-







1861
1919


PRRPL_CDVO
RNA POLYMERASE BETA
CANINE DISTEMPER VIRUS (STRAIN
24-51



SUBUNIT
ONDERSTEPOORT)


PRRPL_HANTV
RNA POLYMERASE
HANTANN VIRUS (STRAIN 76-118)
404-433
461-510
564-591
738-765
905-946
1993-










2020


PRRPL_HRSVA
RNA POLYMERASE BETA
HUMAN RESPIRTAORY SYNCYTIAL VIRUS
103-192
210-237
667-694
788-815
1007-
1138-
1453-
1775-
2062-



SUBUNIT
(STRAIN A2)




1034
1165
1480
1803
2089


PRRPL_MABVM
RNA-DIRECTED RNA
MARBURG VIRUS (STRAIN MUSOKE)
991-1018
1143-
1490-
1811-
2029-
2216-



POLYMERASE


1170
1524
1838
2067
2266


PRRPL_MABVP
RNA-DIRECTED RNA
MARBURG VIRUS (STRAIN POPP)
991-1018
1490-
2239-



POLYMERASE


1524
2267


PRRPL_MEASE
RNA POLYMERASE BETA
MEASLES VIRUS (STRAIN EDMONSTON)
95-122
196-223
2121-



SUBUNIT



2148


PRRPL_MUMPM
RNA POLYMERASE BETA
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
111-142
780-807
1602-



SUBUNIT



1632


PRRPL_NDVB
RNA POLYMERASE BETA
NEWCASTLE DISEASE VIRUS (STRAIN
250-284
477-504
1979-



SUBUNIT
BEAUDETTE C/45)


2013


PRRPL_PI2HT
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN
322-349
1564-
1687-
1901-



SUBUNIT
TOSHIBA)

1598
1721
1946


PRRPL_PI3H4
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN
52-86
136-163
608-638
1081-
1994-
2115-



SUBUNIT
NIH 47885)



1123
2036
2142


PRRPL_PUUMH
RNA-DIRECTED RNA
PUUMALA VIRUS (STRAIN HALLNAS B1)
388-415
557-591
731-758
864-891
926-953
1940-
1998-



POLYMERASE






1971
2025


PRRPL_RABVP
RNA POLYMERASE BETA
RABIES VIRUS (STRAIN PV)
204-231
605-632
2068-



SUBUNIT



2123


PRRPL_RABVS
RNA POLYMERASE BETA
RABIES VIRUS (STRAIN SAD B19)
204-231
605-632
2068-



SUBUNIT



2123


PRRPL_RDV
RNA-DIRECTED RNA
RICE DWARF VIRUS
855-882



POLYMERASE


PRRPL_RVFVZ
RNA-DIRECTED RNA
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12)
1536-
1653-



POLYMERASE

1563
1687


PRRPL_SEND5
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
629-656
1082-
1729-
2145-



SUBUNIT


1116
1756
2180


PRRPL_SENDE
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN ENDERS)
449-476
902-936
1549-
1965-



SUBUNIT



1576
2000


PRRPL_SENDZ
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN 2)
629-656
1082-
1729-
2145-



SUBUNIT


1116
1756
2180


PRRPL_SEOU8
RNA-DIRECTED RNA
SEOUL VIRUS (STRAIN 80-39)
461-488
564-591
731-758
905-932



POLYMERASE


PRRPL_SV5WR
RNA POLYMERASE BETA
SIMIAN VIRUS 5 (STRAIN 21004-WR)
1096-
1250-
1680-
2120-



SUBUNIT

1123
1277
1710
2147


PRRPL_SYNV
RNA POLYMERASE BETA
SONCHUS YELLOW NET VIRUS
825-859
1092-
1490-
1973-
2080-



SUBUNIT


1119
1520
2000
2107


PRRPL_TSWVB
RNA-DIRECTEED RNA
TOMATO SPOTTED WILT VIRUS (BRAZILIAN
477-504
542-573
1119-
1195-
1330-
1415-
1671-
1857-
2083-



POLYMERASE
ISOLATE CPNH1/BR-01)


1150
1229
1357
1442
1698
1884
2110





2166-2193
2324-2368
2771-2798


PRRPL_UUK
RNA POLYMERASE
UUKUNIEMI VIRUS
142-187
1037-
1304-






1071
1331


PRRPL_VSVJH
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS (SEROTYPE
1530-
1809-



SUBUNIT
NEW JERSEY/STRAIN HAZELHU
1557
1836


PRRPL_VSVJO
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS (SEROTYPE
1205-
1809-



SUBUNIT
NEWE JERSEY/STRAIN OGDEN)
1232
1836


PRRPL_VSVSJ
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS
1540-
1768-



SUBUNIT
(STRAIN SAN JUAN)
1567
1798


PRRPO_ACLSV
RNA-DIRECTED RNA
APPLE HLOROTIC LEAF SPOT VIRUS
228-264
564-591



POLYMERASE


PRRPO_BWYVF
PUTATIVE RNA-DIR RNA POL
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
356-383


PRRPO_BYDV1
PUTATIVE RNA-DIR RNA POL
BARLEY YELLOW DWARF VIRUS
772-799




(ISOLATE MAV-PS1)


PRRPO_BYDVP
PUTATIVE RNA-DIR RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE PAV)
772-799


PRRPO_BYDVR
PUTATIVE RNA-DIR RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV)
772-799


PRRPO_CARMV
PUTATIVE RNA-DIR RNA POL
CARNATION MOTTLE VIRUS
93-127
277-304
667-694


PRRPO_CGMVS
PUTATIVE RNA-DIR RNA POL
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
387-414
1040-




(WATERMELON STRAIN SH)

1067


PRRPO_IBDV5
PUTATIVE RNA-DIR RNA POL
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
336-363
392-419




(STRAIN 52/70)


PRRPO_IBDVA
PUTATIVE RNA-DIR RNA POL
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
661-688
717-744




(STRAIN AUSTRALIAN 002-73)


PRRPO_IPNVJ
PUTATIVE RNA-DIR RNA POL
INFECTIOUS PANCREATIC NECROSIS VIRUS
773-800




(SEROTYPE JASPER)


PRRPO_IPNVS
PUTATIVE RNA-DIR RNA POL
INFECTIOUS PANCREATIC NECROSIS VIRUS
773-800




(SEROTYPE SP)


PRRPO_LYCVA
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
834-886
1052-




(STRAIN ARMSTRONG)

1079


PRRPO_PPMVS
PUTATIVE RNA-DIR RNA POL
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN)
402-429
709-736
1072-







1099


PRRPO_REOVD
RNA-DIRECTED RNA
REOVIRUS (TYPE 3/STRAIN DEARING)
61-88



POLYMERASE


PRRPO_REOVL
RNA-DIRECTED RNA
REOVIRUS (TYPE 1/STRAIN LANG)
61-88



POLYMERASE


PRRPO_ROTBR
RNA-DIR RNA POL
BOVINE ROTAVIRUS (STRAIN RF)
68-95
218-245
791-818



SUBUNIT VP1


PRRPO_ROTBU
RNA-DIR RNA POL
BOVINE ROTAVIRUS (STRAIN UK)
65-95
218-245
791-841
975-1002



SUBUNIT VP1


PRRPO_ROTPC
RNA-DIR RNA POL
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
3-44
75-102
363-390
543-585



SUBUNIT VP1


PRRPO_ROTPG
RNA-DIR RNA POL
PORCINE ROTAVIRUS (STRAIN GOTTFRIED
65-95
102-129
791-839
973-1002



SUBUNIT VP1


PRRPO_ROTS1
RNA-DIR RNA POL
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
65-95
791-839
975-1002



SUBUNIT VP1


PRRPO_SCVLA
RNA-DIRECTED RNA

SACCHAROMYCES CEREVISIAE VIRUS L-A
147-188



POLYMERASE


PRRPO_TACV
RNA POLYMERASE
TACARIBE VIRUS
163-204
241-271
1107-
1978-







1134
2008


PRRPO_TMGMV
PUTATAIVE RNA-DIR RNA POL
TOBACCO MILD GREEN MOSAIC VIRUS
230-257
1316-
1397-




(TMV STRAIN U2)

1343
1424


PRRPP_BRSVA
RNA POLYMERASE ALPHA
BOVINE RESPIRATORY SYNCYTIAL VIRUS
99-133



SUBUNIT
(STRAIN A51908)


PRRPP_CDVO
RNA POLYMERASE ALPHA
CANINE DISTEMPER VIRUS (STRAIN
315-370



SUBUNIT
ONDERSTEPOORT)


PRRPP_HRSV
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141



SUBUNIT


PRRPP_HRSV1
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141



SUBUNIT
(SUBGROUP B/STRAIN 18537)


PRRPP_HRSVA
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141



SUBUNIT
(STRAIN A2)


PRRPP_HRSVL
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141



SUBUNIT
(SUBGROUP A/STRAIN LONG)


PRRPP_MEASE
RNA POLYMERASE ALPHA
MEASLES VIRUS (STRAIN EDMONSTON)
315-370



SUBUNIT


PRRPP_MEASI
RNA POLYMERASE ALPHA
MEASLES VIRUS (STRAIN IP-3-CA)
315-370



SUBUNIT


PRRPP_MEASY
RNA POLYMERASE ALPHA
MEASELS VIRUS (STRAIN YAMAGATA-1)
315-370



SUBUNIT


PRRPP_PI1HB
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C35)
84-111
234-261
375-416



SUBUNIT


PRRPP_PI1HC
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
84-111
234-261
375-416



SUBUNIT


PRRPP_PI1HD
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN
84-111
232-262
375-416



SUBUNIT
CI-5/73)


PRRPP_PI1HE
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN
84-111
244-271
375-416



SUBUNIT
CI-14/83)


PRRPP_PI2H
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2 VIRUS
167-194
222-256



SUBUNIT


PRRPP_PI2HT
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2 VIRUS
167-194
222-256



SUBUNIT
(STRAIN TOSHIBA)


PRRPP_PI3B
RNA POLYMERASE ALPHA
BOVINE PARAINFLUENZA 3 VIRUS
34-91
255-282
285-314



SUBUNIT


PRRPP_PI3H4
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 3 VIRUS
114-144
269-299



SUBUNIT
(STRAIN NIH 47885)


PRRPP_PI4HA
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 4A VIRUS
4-38



SUBUNIT
(STRAIN TOSHIBA)


PRRPP_RABVP
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN PV)
93-127



SUBUNIT


PRRPP_SEND5
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
330-357
379-420



SUBUNIT


PRRPP_SEND6
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN 6/94)
330-357
379-420



SUBUNIT


PRRPP_SENDF
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN FUSHIMI)
330-357
379-420



SUBUNIT


PRRPP_SENDH
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN HARIS)
330-357
379-420



SUBUNIT


PRRPP_SENDZ
RNA POLYMERASE ALPHA
SENDAI VIRUS (STRAIN 2)
330-357
379-420



SUBUNIT


PRRP_SV5
RNA POLYMERASE ALPHA
SIMIAN VIRUS 5 (STRAIN W3)
205-232
236-263



SUBUNIT


PSODC_VACCV
SUPEROXIDE DISMUTASE
VACCINIA VIRUS (STRAIN WR)
72-99



LIKE PROTEIN


PSODC_VARV
SUPEROXIDE DISMUTASE
VARIOLA VIRUS
72-99



LIKE PROTEIN


PSPHR_AMEPV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS
91-118
140-167
227-261
361-390


PSPI1_MYXVL
SERPIN 1
MYXOMA VIRUS (STRAIN LAUSANNE)
286-313


PSPI2_VACCV
SERINE PROTEINASE
VACCINIA VIRUS (STRAIN WR)
59-86



INHIBITOR 2


PSPIA_VACCC
SERINE PROTEASE INH 2
VACCINIA VIRUS (STRAIN COPENHAGEN)
18-65



HOMOLOG


PT2C2_CHVP1
TYPE II RESTRICTION ENZYME

PARAMECIUM BURSARIA CHLORELLA VIRUS 1
16-43



CVIAII


PTAA2_VACCV
TRANS-ACTIVATOR
VACCINIA VIRUS
95-133



PROTEIN A2


PTAG8_FOWPV
TRAN-ACTIVATOR
FOWLPOX VIRUS
3-51



PROTEIN FP0


PTAG8_VACCV
TRANS-ACTIVATOR
VACCINIA VIRUS
3-30



PROTEIN GK1


PTAG8_VARV
TRANS-ACTIVATOR
VARIOLA VIRUS
3-30



PROTEIN GK-1


PTALA_BFDV
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING DISEASE VIRUS
291-318


PTALA_POVBO
LARGE T ANTIGEN
BOVINE POLYOMAVIRUS
502-537


PTALA_POVHA
LARGE T ANTIGEN
HAMSTER POLYOMAVIRUS
587-621


PTALA_POVLY
LARGE T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
224-258
616-684


PTALA_POVM3
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
513-540


PTALA_POVMA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
511-538


PTALA_POVMC
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN CRAWFORD
508-535




SMALL-PLAQUE)


PTATR_NPVAC
TRANS-ACT TRANS REG

AUTOGRAPHA CALIFORNICA NUCLEAR
407-434
489-523
532-559



PROTEIN
POLYHEDROSIS VIRUS


PTATR_NPVBM
TRANS-ACT TRANS REG
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
412-439
494-528
537-564



PROTEIN


PTATR_NPVOP
TRANS-ACT TRANS REG

ORGYIA PSEUDOTSUGATA MULTICAPSID
512-554



PROTEIN
POLYHEDROSIS VIRUS


PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
145-172
1215-
1344-
1876-






1242
1371
1903


PTEGU_HCMVA
PROBABLE LARGE TEGUMENT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
1251-
2202-



PROTEIN

1281
2229


PTEGU_HSV11
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
667-694
1673-






1710


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
102-129
228-262
567-611
962-993
1098-
1661-
1884-









1181
1688
1911


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
229-256
566-593
1205-







1232


PTEGU_HSVSA
PROBABLE LARGE TEGUMENT
HERPESVIRUS SAIMIRI (STRAIN 11)
524-607
672-700
777-814
846-898
949-986
990-1017
1467-
2102-



PROTEIN







1497
2135


PTEGU_VZVD
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
1121-
1579-





1158
1609


PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
375-413


PTMAF_AVIS4
TRANSFORMING PROTEIN MAF
AVIAN MUSCULOAPONEUROTIC FIBROSARCOMA
302-336




VIRUS AS42


PTOP1_SFVKA
DNA TOPOISOMERASE I
SHOPE FIBROMA VIRUS (STRAIN KASZA)
38-65
132-176


PTOP1_VACCV
DNA TOPOISOMERASE I
VACCINIA VIRUS
38-65


PTOP1_VARV
DNA TOPOISOMERASE I
VARIOLA VIRUS
38-65


PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI
902-936




LIL 20/1)


PTYSY_HSVAT
THYMIDYLATE SYNTHASE
HERPESVIRUS ATELES
116-143


PTYSY_HSVSA
THYMIDYLATE SYNTHASE
HERPESVIRUS SAIMIRI (STRAIN 11)
120-147


PUL06_EBV
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
115-142
313-340
542-569


PUL06_HSV11
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
586-613


PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
640-667


PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
15-42
302-358
368-402


PUL08_HCMVA
HYPOTHETICAL PROTEIN UL8
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
6-47


PUL11_EBV
HYPOTHETICAL PROTEIN BBLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
15-42


PUL13_HCMVA
HYPOTHETICAL PROTEIN UL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
347-374


PUL14_HSVEB
HYPOTHETICAL GENE 48
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
247-286



PROTEIN


PUL14_VZVD
HYPOTHETICAL GENE 46
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
64-101



PROTEIN


PUL16_HCMVA
HYPOTHETICAL PROTEIN UL16
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
81-112


PUL20_HCMVA
HYPOTH PRO UL20 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-61


PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
44-71


PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
380-407


PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STAIN 11)
34-61
204-231
362-389


PUL31_HCMVA
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
167-194
254-284


PUL32_HSVEB
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPESVIRUS TYPE 1
345-375


PUL34_HSV11
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
116-143


PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
208-235


PUL34_VZVD
VIRION GENE 24 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
112-139


PUL35_HCMVA
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
535-562


PUL37_HSV11
PROTEIN UL37
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
470-497
853-884


PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
715-749
987-1014


PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
31-65
685-737


PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
107-134
485-512
719-746
976-1003


PUL41_VZVD
HOST SHUTOFF VIRION
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
330-364



PROTEIN


PUL42_HSV11
DNA-BINDING PROTEIN UL42
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
231-258


PUL43_VZVD
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
129-156
312-349


PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
114-148
448-485
763-790
802-853


PUL47_HSV11
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
448-515


PUL47_HSV1F
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
488-515


PUL47_HSVE4
97 KD ALPHA TRANS-
EQUINE HERPESVIRUS TYPE 4
190-217



INDUCING PROTEIN


PUL50_HCMVA
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
159-186


PUL52_EBV
PROB DNA REPLICATION
EPSTEIN-BARR VIRUS (STRAIN B95-8)
185-212
787-814



PROTEIN BSLF1


PUL52_HSVEB
DNA REPLICATION
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB41′)
193-220
943-970



PROTEIN UL52


PUL52_HSVSA
PROB DNA REP GENE 56
HERPESVIRUS SAIMIRI (STRAIN 11)
130-157



PROTEIN


PUL52_VZVD
PROB DNA REP GENE 6
VARICELLA-ZOSTER VIRUS
301-337



PROTEIN
(STRAIN DUMAS)


PUL59_HCMVA
HYPOTHETICAL PROTEIN UL59
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-101


PUL70_HCMVA
PROB DNA REP PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
65-92



UL70


PUL73_HCMVA
UL73 GLYCOPROTEIN PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
5-73


PUL73_HSVSA
HYPOTHETICAL GENE 53
HERPESVIRUS SAIMIRI (STRAIN 11)
9-36



PROTEIN


PUL74_HCMVA
HYPOTHETICAL PROTEIN UL74
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
45-79



PROTEIN BSLF1


PUL87_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
409-436



B(C)RF1


PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
536-563
729-768




UGANDA-1102)


PUL87_HSVSA
HYPOTHETICAL GENE 24
HERPRESVIRUS SAIMIRI (STRAIN 11)
582-609



PROTEIN


PUL92_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
107-144
168-196



BDLF4


PUL92_HSVSA
HYPOTHETICAL GENE 31
HERPESVIRUS SAIMIRI (STRAIN 11)
92-122



PROTEIN


PUL93_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
26-53
314-381


PUL95_HCMVA
HYPOTHETICAL PROTEIN UL95
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
37-71


PUL95_HSV6U
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
73-100
105-134




UGANDA-1102)


PULA4_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
4-31
443-477


PULB9_HCMVA
HYPOTHETICAL PROTEIN UL119
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
33-78


PULD0_HCMVA
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
90-124


PUNG_HSVSA
URACIL-DNA GLYCOSYLASE
HERPESVIRUS SAIMIRI (STRAIN 11)
135-176


PUNG_SFVKA
URACIL-DNA GLYCOSYLASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
81-115


PUNG_VACCC
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
85-116
129-156


PUNG_VACCV
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN WR)
85-116
129-156


PUNG_VARV
URACIL-DNA GLYCOSYLASE
VARIOLA VIRUS
85-116


PUS09_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
20-47



HXLF3


PUS14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
277-308



HVLF4


PUS18_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
191-218


PV121_ASFL5
LIS 121-1 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN LIS57)
2-29


PV125_AMVLE
125 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE
702-729




LEIDEN)


PV137_ASFL5
LIS 137 PROTEIN
AFRICAN SWINEN FEVER VIRUS (STRAIN LIS57)
2-29


PV13K_TRVPL
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PLB)
59-86


PV143_NPVAC
HELICASE

AUTOGRAPHA CALIFORNICA NUCLEAR
496-560
945-972




POLYHEDROSIS VIRUS


PV16K_TRVPS
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PSG)
79-113


PV1A_BBMV
1A PROTEIN
BROAD BEAN MOTTLE VIRUS
23-54
710-737
840-868


PV1A_BMV
1A PROTEIN
BROME MOSAIC VIRUS
22-58
384-411
836-863
982-919


PV1A_CCMV
1A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
249-276


PV1A_CMVFN
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
11-38


PV1A_CMVO
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
11-38
864-902


PV1A_CMVQ
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
11-38


PV1A_PSVJ
1A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
4-38
372-399


PV1A_TAV
1A PROTEIN
TOMATO ASPERMY VIRUS
11-38
271-298
376-403
857-884


PV25K_NPVAC
25 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
4-31


PV29K_PEBV
29.6 KD PROTEIN
PEA EARLY BROWNING VIRUS
140-170


PV29K_TRVSY
29 KD PROTEIN
TOBACCO RATTLE VIRUS
170-197


PV29K_TRVTC
29 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
48-75


PV2A_BBMV
2A PROTEIN
BROAD BEAN MOTTLE VIRUS
301-328


PV2A_CCMV
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
178-205


PV2A_CMVFN
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
792-819


PV2A_PSVJ
2A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
325-352
717-751


PV2A_TAV
2A PROTEIN
TOMATO ASPERMY VIRUS
313-340
722-756


PV30K_HCMVE
30 KD MAJOR EARLY PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN
194-221




EISENHARDT)


PV30K_TRVTC
29.1 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
130-160


PV33P_ADE41
33 KD PHOSPHOPROTEIN
HUMAN ADENOVIRUS TYPE 41
15-42


PV362_ASFB7
K′362 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
75-102


PV363_ASFB7
D′363 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
3-30
172-199


PV3A_BMV
3A PROTEIN
BROME MOSAIC VIRUS
11-38


PV3A_CMVFN
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
222-252


PV3A_CMVM
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN M)
2171-252


PV3A_CMVO
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
222-253


PV3A_CMVY
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Y)
222-253


PV3B_IBVB
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
25-57




(STRAIN BEAUDETTE)


PV3A_IBVU5
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
29-56




(STRAIN UK/183/66)


PV3A_IBVB
3B PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
6-33




(STRAIN BEAUDETTE)


PV50K_BYDVP
50 KD PROTEIN
BARLEY YELLOW DWARF VIRUS (ISOLATE PAV)
119-146


PV51K_BWYVF
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
113-147
424-451


PV51K_BWYVG
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE GB1)
113-147
424-451


PV56K_PLRV1
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
124-151
438-472


PV56K_PLRVW
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
124-151
438-477


PV58K_BSMV
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
128-155


PV70K_PLRV1
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
110-140


PV70K_PLRVW
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
110-140


PV90K_AMVLE
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN)
107-134


PVA06_VACCC
PROTEIN A6
VACCINIA VIRUS (STRAIN COPENHAGEN)
157-216
250-277
283-310
314-355


PVA06_VACCV
PROTEIN A6
VACCINIA VIRUS (STRAIN WR)
156-215
249-276
282-309
313-354


PVA06_VARV
PROTEIN A6
VARIOLA VIRUS
157-216
250-277
283-310
314-355


PVA08_VACCC
PROTEIN A8
VACCINIA VIRUS (STRAIN COPENHAGEN)
176-206


PVA08_VARV
PROTEIN A8
VARIOLA VIRUS
176-206


PVA09_VARV
PROTEIN A9
VARIOLA VIRUS
60-95


PVA11_VACCC
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
219-283


PVA11_VARV
PROTEIN A11
VARIOLA VIRUS
220-284


PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
440-467


PVA20_VACCC
PROTEIN A20
VACCINIA VIRUS (STRAIN COPENHAGEN)
8-67
330-357


PVA20_VARV
PROTEIN A20
VARIOLA VIRUS
8-67
330-357


PVA22_VACCC
PROTEIN A22
VACCINIA VIRUS (STRAIN COPENHAGEN)
45-72


PVA22_VARV
PROTEIN A22
VARIOLA VIRUS
56-83


PVA23_VACCC
PROTEIN A23
VACCINIA VIRUS (STRAIN COPENHAGEN)
95-144


PVA23_VARV
PROTEIN A23
VARIOLA VIRUS
95-144


PVA28_VACCV
PROTEIN A28
VACCINIA VIRUS (STRAIN WR)
22-49


PVA28_VARV
PROTEIN A28
VARIOLA VIRUS
22-49


PVA30_VACCV
PROTEIN A30
VACCINIA VIRUS (STRAIN WR)
12-55


PVA31_VACCC
PROTEIN A31
VACCINIA VIRUS (STRAIN COPENHAGEN)
88-115


PVA31_VARV
PROTEIN A31
VARIOLA VIRUS
88-122


PVA34_VACCC
PROTEIN A34
VACCINIA VIRUS (STRAIN COPENHAGEN)
87-114


PVA34_VACCV
PROTEIN A34
VACCINIA VIRUS (STRAIN WR)
87-114


PVA34_VARV
PROTEIN A34
VARIOLA VIRUS
87-114


PVA36_VACCV
PROTEIN A36 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
120-155


PVA36_VARV
PROTEIN A36 PRECURSOR
VARIOLA VIRUS
127-154


PVA38_VACCC
PROTEIN A38
VACCINIA VIRUS (STRAIN COPENHAGEN)
44-81


PVA38_VACCV
PROTEIN A38
VACCINIA VIRUS (STRAIN WR)
44-81


PVA38_VARV
PROTEIN A38
VARIOLA VIRUS
44-91


PVA39_VACCC
PROTEIN A39
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-71
155-182


PVA39_VACCV
PROTEIN A39
VACCINIA VIRUS (STRAIN WR)
75-109
193-220


PVA43_VACCC
PROTEIN A43
VACCINIA VIRUS (STRAIN COPENHAGEN)
145-172


PVA43_VACCV
PROTEIN A43
VACCINIA VIRUS (STRAIN WR)
145-172


PVA43_VARV
PROTEIN A43
VARIOLA VIRUS
146-173


PVA47_VACCC
PROTEIN A47
VACCINIA VIRUS (STRAIN COPENHAGEN)
143-184


PVA47_VACCV
PROTEIN A47
VACCINIA VIRUS (STRAIN WR)
143-184


PVA47_VARV
PROTEIN A47
VARIOLA VIRUS
142-184


PVA49_VACCC
PROTEIN A49
VACCINIA VIRUS (STRAIN COPENHAGEN)
61-91


PVA49_VACCV
PROTEIN A49
VACCINIA VIRUS (STRAIN WR)
61-91


PVA49_VARV
PROTEIN A49
VARIOLA VIRUS
61-91


PVA55_VACCC
PROTEIN A55
VACCINIA VIRUS (STRAIN COPENHAGEN)
55-82
126-156
435-462


PVA55_VACCV
PROTEIN A55
VACCINIA VIRUS (STRAIN WR)
55-82
126-156
435-462


PVAL1_BCTV
AL1 PROTEIN
BEET CURLY TOP VIRUS
22-49


PVAL3_CLVK
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST
79-106




KENYAN 844)


PVAL3_CLVN
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
79-106


PVAL3_SLCV
AL3 PROTEIN
SQUASH LEAF CURL VIRUS
101-128


PVAL3_TYLCV
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
79-129


PVAT_CAMVC
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
22-70
93-129


PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
22-70


PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
22-70
93-129


PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
22-70
93-129


PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
22-70
93-129


PVAT_CAMVS
APHID TRANSMISSION PROTEIN

22-70
93-130


PVAT_CAMVW
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
36-70


PVAT_CERV
APHID TRANSMISSION PROTEIN
CARNATION ETCHED RING VIRUS
102-138


PVAT_FMVD
APHID TRANSMISSION PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
52-82
103-130


PVB03_VACCV
PROTEIN B3
VACCINIA VIRUS (STRAIN WR)
108-135


PVB04_VACCC
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)
92-123
182-211
286-313
324-361


PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
92-123
182-211
286-313
324-361


PVB04_VARV
PROTEIN B4
VARIOLA VIRUS
89-127
182-211
286-313
324-361


PVB05_VACC0
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN LC16MO)
254-284



PRO PREC


PVB05_VACCC
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN COPENHAGEN)
254-284



PRO PREC


PVB05_VACCL
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN LISTER)
254-284



PRO PREC


PVB05_VACCV
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN WR)
254-284



PRO PREC


PVB07_VACCV
PROTEIN B7 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
28-62


PVB08_VACCC
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
26-53


PVB08_VACCV
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
26-53


PVB11_VACCC
PROTEIN B11
VACCINIA VIRUS (STRAIN COPENHAGEN)
21-54


PVB11_VACCV
PROTEIN B11
VACCINIA VIRUS (STRAIN WR)
5-38


PVB16_COWPX
IL-1 BIND PRO PRECURSOR
COWPOX VIRUS
113-140


PVB17_VACCC
PROTEIN B17
VACCINIA VIRUS (STRAIN COPENHAGEN)
258-285


PVB17_VACCV
PROTEIN B17
VACCINIA VIRUS (STRAIN WR)
258-285


PVB18_VACCC
PROTEIN B18
VACCINIA VIRUS (STRAIN COPENHAGEN)
337-375


PVB18_VACCV
PROTEIN B18
VACCINIA VIRUS (STRAIN WR)
337-375


PVB18_VARV
PROTEIN B18
VARIOLA VIRUS
337-378


PVB19_VACCC
SURFACE ANTIGEN S
VACCINIA VIRUS (STRAIN COPENHAGEN)
182-212



PRECURSOR


PVB19_VACCD
SURFACE ANTIGEN S
VACCINIA VIRUS (STRAIN DAIREN I)
180-210



PRECURSOR


PVB19_VACCV
SURFACE ANTIGEN S
VACCINIA VIRUS (STRAIN WR)
180-210



PRECURSOR


PVB19_VARV
SURFACE ANTIGEN S
VARIOLA VIRUS
180-210



PRECURSOR


PVB20_VACCC
PROTEIN B20
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-82


PVB21_VACCV
PROTEIN B21
VACCINIA VIRUS (STRAIN WR)
64-91


PVBL1_BGMV
BL1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
120-147
248-275


PVBL1_CLVK
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST
118-145




KENYAN 844)


PVBL1_CLVN
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
118-145


PVBL1_PYMVV
BL1 PROTEIN
POTATO YELLOW MOSIAC VIRUS (ISOLATE
120-147




VENEZUELA)


PVC02_VACCC
PROTEIN C2
VACCINIA VIRUS (STRAIN COPENHAGEN)
405-432


PVC02_VACCV
PROTEIN C2
VACCINIA VIRUS (STRAIN WR)
41-71
405-432


PVC04_SFVKA
PROTEIN C4
SHOPE FIBROMA VIRUS (STRAIN KASZA)
209-236
484-515


PVC04_VACCC
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-46


PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
12-16


PVC04_VARV
PROTEIN C4
VARIOLA VIRUS
12-46


PVC05_SFVKA
HYPOTHETICAL PROTEIN C5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
85-125
152-179


PVC05_VACCC
PROTEIN C5
VACCINIA VIRUS (STRAIN COPENHAGEN)
38-65


PVC05_VACCV
PROTEIN C5
VACCINIA VIRUS (STRAIN WR)
38-65


PVC05_VARV
PROTEIN C5
VARIOLA VIRUS
36-66


PVC07_VACCV
PROTEIN C7
VACCINIA VIRUS (STRAIN WR)
80-111


PVC07_VARV
PROTEIN C7
VARIOLA VIRUS
80-111


PVC09_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
42-69
82-116
178-205
252-279
289-325
575-605


PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
42-69
82-116
178-205
252-279
289-325
575-605


PVC10_VACCC
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
136-180


PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
136-163


PVC10_VARV
PROTEIN C10
VARIOLA VIRUS
136-163


PVC13_SFVKA
PROTEIN C13
SHOPE FIBROMA VIRUS (STRAIN KASZA)
3-30
39-66
137-182
206-240


PVC17_VACCC
PROTEIN C17/B23
VACCINIA VIRUS (STRAIN COPENHAGEN)
111-152


PVC18_VACCC
PROTEIN C18/B24
VACCINIA VIRUS (STRAIN COPENHAGEN)
40-74


PVC19_SFVKA
PROTEIN C19
SHOPE FIBROMA VIRUS (STRAIN KASZA)
56-97


PVC20_VACCC
PROTEIN C20/B26
VACCINIA VIRUS (STRAIN COPENHAGEN)
72-99


PVC22_VARV
PROTEIN C22/B28 HOMOLOG
VARIOLA VIRUS
299-326


PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
847-874


PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
136-170
355-382




UGANDA-1102)


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
769-799


PVCG3_NPVAC
DNA-BINDING PROTIEN

AUTOGRAPHA CALIFORNICA NUCLEAR
133-165
199-248




POLYHEDROSIS VIRUS


PVCOM_ADE02
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 2
88-115


PVCOM_ADE05
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 5
87-114


PVD05_FOWP1
92.6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
6-33
184-211
321-348


PVD05_VACCC
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
240-267
333-360


PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
240-267


PVD05_VARV
PROTEIN D5
VARIOLA VIRUS
240-267


PVD09_VACCC
PROTEIN D9
VACCINIA VIRUS (STRAIN COPENHAGEN)
123-150


PVD09_VACCV
PROTEIN D9
VACCINIA VIRUS (STRAIN WR)
123-150


PVD09_VARV
PROTEIN D9
VARIOLA VIRUS
123-160


PVD10_SFVKA
PROTEIN D10
SHOPE FIBROMA VIRUS (STRAIN KASZA)
18-52


PVDBP_CERV
DNA-BINDING PROTEIN
CARNATION ETCHED RING VIRUS
2-35


PVE02_VARV
PROTEIN E2
VARIOLA VIRUS
282-322


PVE06_VACCC
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
89-116
437-464


PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
89-116
437-464


PVE06_VARV
PROTEIN E6
VARIOLA VIRUS
89-116
367-394
437-464


PVE1_HPV18
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
60-87


PVE1_HPV2A
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
21-48


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
180-207


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
103-130


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
55-89


PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
25-59


PVE1_HPV47
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
146-173


PVE1_HPV57
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
21-48


PVE26_NPVAC
EARLY 25.9 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
72-113




POLYHEDROSIS VIRUS


PVE2_CRPVK
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS
5-34




(STRAIN KANSAS)


PVE2_HPV05
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
17-51


PVE2_HPV13
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
157-184
334-361


PVE2_HPV16
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
61-105
312-342


PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
313-340


PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
159-186


PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
159-193


PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
304-331


PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
158-192
327-354


PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
7-34
323-357


PVE2_HPV47
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
17-51
148-175
276-303


PVE2_HPV51
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
137-184


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
166-193


PVE2_HPV58
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
2-36
309-336


PVE2_HPV5B
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
17-51


PVE2_PAPVE
PROBABLE E2 PROTEIN
EUROPEAN ELK PAPILLOMA VIRUS
120-150


PVE2_PCPV1
E2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMA VIRUS TYPE 1
267-294
327-361


PVE4_HPV05
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
202-229


PVE4_HPV11
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
81-108


PVE4_HPV16
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
66-93


PVE4_HPV18
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
59-86


PVE4_HPV31
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
75-102


PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
63-97


PVE4_HPV5B
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
202-229


PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
30-60


PVE5A_HPV6B
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
30-60


PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6C
30-60


PVE5_HPV35
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
27-54


PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
11-41


PVE5_PCPV1
PROBABLE E5 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
35-62


PVE6_HPV18
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
75-102


PVE6_HPV31
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
69-96


PVE6_HPV39
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
71-102


PVE6_HPV41
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
119-146


PVE6_HPV45
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 45
75-102


PVE6_HPV51
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
72-99


PVE6_HPVME
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE ME180
71-102


PVE94_NPVAC
EARLY 94 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
620-647




POLYHEDROSIS VIRUS


PVEF_GVTN
VIRAL ENHANCING FACTOR
TRICHOPLUSIA N1 GRANULOSIS VIRUS
411-438


PVENV_DHV11
ENVELOPE GLYCOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/61)
318-366



PRECURSOR


PVENV_EAV
PROBABLE ENVELOPE PROTEIN
EQUINE ARTERITIS VIRUS
120-147


PVENV_THOGV
ENVELOPE GLYCOPROTEIN
THOGOTO VIRUS
313-347



PRECURSOR


PVF03_VACCC
PROTEIN F3
VACCINIA VIRUS (STRAIN COPENHAGEN)
71-110
185-212


PVF03_VACCV
PROTEIN F3
VACCINIA VIRUS (STRAIN WR)
71-110
185-212


PVF05_VACCP
36 KD MAJOR MEMBRANE
VACCINIA VIRUS (STRAIN L-IVP)
33-60



PRO PRECURSO


PVF05_VACCV
36 KD MAJOR MEMBRANE
VACCINIA VIRUS (STRAIN WR)
33-60



PRO PRECURSO


PVF06_VARV
PROTEIN F6
VARIOLA VIRUS
10-44


PVF11_VACCC
PROTEIN F11
VACCINIA VIRUS (STRAIN COPENHAGEN)
274-321


PVF11_VACCP
PROTEIN F11
VACCINIA VIRUS (STRAIN L-IVP)
270-317


PVF11_VARV
PROTEIN F11
VARIOLA VIRUS
274-321


PVF12_VACCC
PROTEIN F12
VACCINIA VIRUS (STRAIN COPENHAGEN)
10-37
113-140
554-581


PVF12_VACCP
PROTEIN F12
VACCINIA VIRUS (STRAIN L-IVP)
10-37
113-140
554-581


PVF12_VARV
PROTEIN F12
VARIOLA VIRUS
10-37
202-236
554-581


PVF16_VACCC
PROTEIN F16
VACCINIA VIRUS (STRAIN COPENHAGEN)
35-62
152-179


PVF16_VACCP
PROTEIN F16
VACCINIA VIRUS (STRAIN L-IVP)
35-62
152-179


PVF16_VARV
PROTEIN F16
VARIOLA VIRUS
35-62
149-179


PVFP4_FOWPV
PROTEIN FP4
FOWLPOX VIRUS
146-173


PVFUS_ORNFNZ
10 KD FUSION PROTEIN
ORF VIRUS (STRAIN NZ2)
59-86


PVFUS_VACCC
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-64


PVFUS_VACCV
KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
37-64


PVG01_VACCC
PROTEIN G1
VACCINIA VIRUS (STRAIN COPENHAGEN)
225-252
301-335


PVG01_VACCV
PROTEIN G1
VACCINIA VIRUS (STRAIN WR)
164-191
240-274


PVG01_VARV
PROTEIN G1
VARIOLA VIRUS
225-252
301-335


PVG02_VACCV
ISATIN-B-TSC DEP PROTEIN
VACCINIA VIRUS (STRAIN WR)
96-123


PVG02_VARV
ISATIN-B-TSC DEP PROTEIN
VARIOLA VIRUS
96-123


PVG03_HSVEB
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
146-176


PVG03_HSVEK
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
146-176




KENTUCKY A)


PVG05_VACCC
PROTEIN G5
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-75
131-161
225-289
355-389


PVG05_VARV
PROTEIN G5
VARIOLA VIRUS
48-75
124-161
255-289
355-389


PVG07_HSV11
HYPOTH GENE 7 MEMB PRO
ICTALURID HERPES VIRUS 1
71-98


PVG09_VACCC
PROTEIN F1
VACCINIA VIRUS (STRAIN COPENHAGEN)
308-338


PVG09_VACCV
PROTEIN F1
VACCINIA VIRUS (STRAIN WR)
271-301


PVG09_VARV
PROTEIN F1
VARIOLA VIRUS
308-338


PVG12_SPVIR
GENE 12 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
11-45


PVG17_HSV11
HYPOTHETICAL GENE 17
ICTALURID HERPESVIRUS 1
177-204



PROTEIN


PVG18_HSV11
HYPOTHETICAL GENE 18
ICTALURID HERPESVIRUS 1
174-208



PROTEIN


PVG1_SPVIR
CAPSID PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
260-287


PVG1_SPV4
CAPSID PROTEIN
SPIROPLASMA VIRUS 4
287-314
383-410


PVG22_HSV11
HYPOTHETICAL GENE 22
ICTALURID HERPESVIRUS 1
373-400
581-622
668-705
766-824



PROTEIN


PVG24_HSV11
HYPOTHETICAL GENE 24
ICTALURID HERPESVIRUS 1
31-58



PROTEIN


PVG28_HSV11
HYPOTHETICAL GENE 28
ICTALURID HERPESVIRUS 1
253-290
497-528



PROTEIN


PVG2R_AMEPV
HYPOTHETICAL G2R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
33-64
91-118


PVG2_SPV1R
GENE 2 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
285-326


PVG2_SPV4
GENE 2 PROTEIN
SPIROPLASMA VIRUS 4
146-173
175-205
262-310


PVG34_HSV11
HYPOTHETICAL GENE 34
ICTALURID HERPESVIRUS 1
95-122



PROTEIN


PVG37_HSV11
HYPOTHETICAL GENE 37
ICTALURID HERPESVIRUS 1
442-469



PROTEIN


PVG39_HSV11
HYPOTHETICAL GENE 39
ICTALURID HERPESVIRUS 1
651-678
1088-



PROTEIN


1115


PVG3L_AMEPV
HYPOTHETICAL G3L PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
2-29


PVG3_SPVIR
GENE 3 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
15-49


PVG3_SPV4
GENE 3 PROTEIN
SPIROPLASMA VIRUS 4
18-52
87-148


PVG45_HSVSA
HYPOTHETICAL GENE 45
HERPESVIRUS SAIMIRI (STRAIN 11)
138-165



PROTEIN


PVG46_HSV11
PROBABLE MAJOR
ICTALURID HERPESVIRUS 1
142-169
346-373
897-924
973-1007



GLYCOPROTEIN


PVG48_HSVSA
HYPOTHETICAL GENE 48
HERPESVIRUS SAIMIRI (STRAIN 11)
360-394



PROTEIN


PVG4R_AMEPV
G4R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
4-31


PVG4_SPV1R
GENE 4 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
116-146


PVG51_HSV11
HYPOTH GENE 51 MEMBRANE
ICTALURID HERPESVIRUS 1
34-61
87-114



PROTEIN


PVG52_HSVSA
HYPOTHETICAL GENE 52
HERPESVIRUS SAIMIRI (STRAIN 11)
47-74



PROTEIN


PVG56_HSV11
HYPOTHETICAL GENE 56
ICTALURID HERPESVIRUS 1
582-609



PROTEIN


PVG5_SPV1R
GENE 5 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
65-92


PVG5_SPV4
GENE 5 PROTEIN
SPIROPLASMA VIRUS 4
56-83


PVG63_HSV11
HYPOTHETICAL GENE 63
ICTALURID HERPESVIRUS 1
550-584



PROTEIN


PVG64_HSV11
HYPOTHETICAL GENE 64
ICTALURID HERPESVIRUS 1
447-504



PROTEIN


PVG65_HSV11
HYPOTHETICAL GENE 65
ICTALURID HERPESVIRUS 1
1213-



PROTEIN

1254


PVG66_HSV11
HYPOTHETICAL GENE 66
ICTALURID HERPESVIRUS 1
362-406



PROTEIN


PVG67_HSV11
HYPOTHETICAL GENE 67
ICTALURID HERPESVIRUS 1
1342-



PROTEIN

1369


PVG68_HSV11
HYPOTHETICAL GENE 68
ICTALURID HERPESVIRUS 1
261-288



PROTEIN


PVG72_HSV11
HYPOTHETICAL GENE 72
ICTALURID HERPESVIRUS 1
447-481



PROTEIN


PVG75_HSV11
HYPOTHETICAL GENE 75
ICTALURID HERPESVIRUS 1
388-422



PROTEIN


PVG76_HSV11
HYPOTHETICAL GENE 76
ICTALURID HERPESVIRUS 1
200-227



PROTEIN


PVG7_SPV4
GENE 7 PROTEIN
SPIROPLASMA VIRUS 4
14-44


PVGF1_IBVB
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
1230-
2408-





1260
2435


PVGL2_CVBF
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN L9)
399-426

1022-
1278-







1084
1305


PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN VACCINE)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR
HUMAN CORONAVIRUS (STRAIN 229E)
770-797
809-875
1056-







1112


PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN
643-684
1030-




WILD TYPE 4)

1092


PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN A59)
36-63
591-632
978-1040


PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN
643-684
1030-




JHMV/VARIANT CL-2)

1092


PVGL2_CVMJH
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN JHM)
502-543
889-951


PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
692-733
1072-
1353-




CORONAVIRUS (STRAIN FS722


1145
1389


PVGL2_CVPM1
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
692-733
1069-
1353-




CORONAVIRUS (STRAIN MILLE


1145
1389


PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
73-107
690-731
1067-
1351-




CORONAVIRUS (STRAIN PUR46


1143
1387


PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-107
690-731
1067-1143
1351-




CORONAVIRUS (STRAIN PURD



1387


PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS (STRAIN
468-509
845-921
1129-




86/137004/BRITISH ISOLAT


1165


PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
468-509
845-921
1129-




(STRAIN RM4)


1165


PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-107
690-731
1067-1143
1351-




CORONAVIRUS (STRAIN NEB72



1387


PVGL2_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
68-102



GLYCOPROTEIN


PVGL2_FIPV
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS
189-233
454-481
709-736
1072-
1356-




(STRAIN 79-1146)



1148
1392


PVGL2_1BV6
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
809-836
876-903
1057-




(STRAIN 6/82)


1091


PVGL2_1BVB
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
808-835
875-902
1056-




(STRAIN BEAUDETTE)


1090


PVGL2_IBVD2
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
809-836
876-903
1057-




(STRAIN D274)


1091


PVGL2_IBVK
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
808-835
875-902
1056-




(STRAIN KB8523)


1090


PVGL2_IBVM
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
808-835
875-902
1056-




(STRAIN M41)


1090


PVGLB_EBV
GLYCOPROTEIN GP110
EPSTEIN-BARR VIRUS (STRAIN B95-8)
95-122
631-658



PRECURSOR


PVGLB_HCMVA
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
25-88
397-424
440-467
851-878


PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
50-88
397-424
435-462
852-879


PVGLB_HSVB1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
427-454


PVGLB_HSVB2
GLYCOPROTEIN B-1
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
447-474



PRECURSOR


PVGLB_HSVE1
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (ISOLATE HVS25A)
443-470
934-961


PVGLB_HSVE4
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 4
486-513
616-643


PVGLB_HSVEA
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1)
443-470
934-961


PVGLB_HSVEB
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
443-470
934-961


PVGLB_HSVEL
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D)
443-470
933-960


PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B)
93-120
352-379


PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
381-408
441-475


PVGLC_HSV11
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
469-510


PVGLC_HSV1K
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
469-510


PVGLC_HSVEB
GLYCOPROTEIN C PRECURSOR
EQUINE HERPESVIRUS TYPE 1
124-151


PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
295-322


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN SCOTT)
295-322


PVGLE_HSV2
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
111-148


PVGLF_BRSVA
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
216-243
442-469
486-531



PRECURSOR
(STRAIN A51908)


PVGLF_BRSVC
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
216-243
444-471
486-533



PRECURSOR
(STRAIN COPENHAGEN)


PVGLF_BRSVR
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
216-243
444-469
488-533



PRECURSOR
(STRAIN RB94)


PVGLF_CDVO
FUSION GLYCOPROTEIN
CANINE DISTEMPER VIRUS (STRAIN
252-293
340-367



PRECURSOR
ONDERSTEPOORT)


PVGLF_HRSV1
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-203
442-471
488-515



PRECURSOR
(SUBGROUP B/STRAIN 18537)


PVGLF_HRSVA
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
213-243
488-518



PRECURSOR
(STRAIN A2)


PVGLF_HRSVL
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
216-243
444-471
488-515



PRECURSOR
(SUBGROUP A/STRAIN LONG)


PVGLF_HRSVR
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
213-243
442-471
488-518



PRECURSOR
(STRAIN RSS-2)


PVGLF_MEASE
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAINS EDMONSTON
228-262



PRECURSOR
AND HALLE)


PVGLF_MEASI
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN IP-3-CA)
231-265



PRECURSOR


PVGLF_MEASY
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN YAMAGATA-1)
228-262



PRECURSOR


PVGLF_MUMP1
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL-1)
20-54
447-486



PRECURSOR


PVGLF_MUMPM
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
20-54
447-486



PRECURSOR


PVGLF_MUMPR
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN RW)
20-54
447-486



PRECURSOR


PVGLF_MUMPS
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL)
151-178
426-511



PRECURSOR


PVGLF_NDVL
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
426-512



PRECURSOR
AUSTRALIA-VICTORIA/32)


PVGLF_NDVB
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
426-512



PRECURSOR
BEAUDETTE C/45)


PVGLF_NDVH3
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN HER/33)
151-178
426-512



PRECURSOR


PVGLF_NDVH4
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
426-512



PRECURSOR
B1-HITCHNER/47)


PVGLF_NDVI
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45)
151-178
426-512



PRECURSOR


PVGLF_NDVA
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN LAS/46)
151-178
192-219
426-512



PRECURSOR


PVGLF_NDVM
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
437-512



PRECURSOR
MIYADERA/51)


PVGLF_NDVQ
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
433-512



PRECURSOR
QUEENSLAND/66)


PVGLF_NDVT
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS)
151-178
426-512



PRECURSOR


PVGLF_NDVTG
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
151-178
426-512



PRECURSOR
TEXAS G.B./48)


PVGLF_NDVU
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67)
151-178
426-512



PRECURSOR


PVGLF_PHODV
FUSION GLYCOPROTEIN
PHOCINE DISTEMPER VIRUS
36-63
221-262
309-336



PRECURSOR


PVGLF_PI1HC
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
147-174
210-266



PRECURSOR


PVGLF_PI2H
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528



PRECURSOR


PVGLF_PI2HG
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528



PRECURSOR
(STRAIN GREER)


PVGLF_PI2HT
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528



PRECURSOR
(STRAIN TOSHIBA)


PVGLF_PI3B
FUSION GLYCOPROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
115-182
207-241
459-497



PRECURSOR


PVGLF_PI3H4
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
115-182
207-241
459-497



PRECURSOR
(STRAIN N1H 47885)


PVGLF_RINDK
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN KABETE O)
224-265
458-485



PRECURSOR


PVGLF_RINDL
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN L)
224-265
458-506



PRECURSOR


PVGLF_SEND5
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
122-149
211-245
480-507



PRECURSOR


PVGLF_SENDF
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN FUSHIMI)
122-149
211-245
480-507



PRECURSOR


PVGLF_SENDH
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HARRIS)
122-149
211-245
480-507



PRECURSOR


PVGLF_SENDJ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HVJ)
122-149
211-245
480-507



PRECURSOR


PVGLF_SENDZ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN Z)
122-149
211-245
480-507



PRECURSOR


PVGLF_SV41
FUSION GLYCOPROTEIN
SIMIAN VIRUS 41
144-185
241-269
459-496



PRECURSOR


PVGLF_SV5
FUSION GLYCOPROTEIN
SIMIAN VIRUS 5 (STRAIN W3)
137-171
417-444



PRECURSOR


PVGLF_TRTV
FUSION GLYCOPROTEIN
TURKEY RHINOTRACHEITIS VIRUS
124-161
193-200
457-484



PRECURSOR


PVGLG_BEFV
SPIKE GLYCOPROTEIN
BOVINE EPHEMERAL FEVER VIRUS
523-557



PRECURSOR


PVGLG_BRSVC
MAJOR SURFACE
BOVINE RESPIRATORY SYNCYTIAL VIRUS
92-123



GLYCOPROTEIN G
(STRAIN COPENHAGEN)


PVGLG_HRSV1
MAJOR SURFACE
HUMAN RESPIRATORY SYNCYTIAL VIRUS
63-93



GLYCOPROTEIN G
(SUBGROUP B/STRAIN 18537)


PVGLG_HRSV4
MAJOR SURFACE
HUMAN RESPIRATORY SYNCYTIAL VIRUS
66-107



GLYCOPROTEIN G
(STRAIN RSB5857)


PVGLG_HRSV5
MAJOR SURFACE
HUMAN RESPIRATORY SYNCYTIAL VIRUS
243-273



GLYCOPROTEIN G
(STRAIN RSB6190)


PVGLG_HRSV8
MAJOR SURFACE
HUMAN RESPIRATORY SYNCYTIAL VIRUS
66-93



GLYCOPROTEIN G
(SUBGROUP B/STRAIN 8/60)


PVGLG_HSVE4
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 4
271-298


PVGLG_HSVEB
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
383-410


PVGLG_RABVT
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN STREET)
489-519



PRECURSOR


PVGLG_VSVIG
SPIKE GLYCOPROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE
472-499



PRECURSOR
INDIANA/STRAIN GLASGOW)


PVGLH_EBV
GLYCOPROTEIN GP85
EPSTEIN-BARR VIRUS (STRAIN B95-8)
549-576
619-648



PRECURSOR


PVGLH_HCMVA
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
107-136
270-297


PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
106-135


PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
62-89
360-403


PVGLH_HSVSA
GLYCOPROTEIN H PRECURSOR
HERPESVIRUS SAIMIRI (STRAINN 11)
388-415


PVGLI_HCMVA
IE GLYCOPROTEIN PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
47-111


PVGLM_BUNGE
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
512-546
914-941
1128-







1255


PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
913-950


PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
340-374
504-535
682-709


PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
DUGBE VIRUS
945-972


PVGLM_HANTB
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1)
73-100
693-720


PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
75-102


PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
75-102


PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN 76-118)
75-102


PVGLM_INSV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS
628-655
1069-






1101


PVGLM_PHV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS
69-96


PVGLM_PUUMH
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN HALLNAS B1)
72-110


PVGLM_PUUMS
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN SOTKAMO)
72-110


PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
513-540
693-720


PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R22)
73-100
513-540
694-721


PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11)
73-100
513-540
694-721


PVGLN_BEFV
NONSTRUCT GLYCOPRO GNS
BOVINE EPHEMERAL FEVER VIRUS
523-564



PRECURSOR


PVGLP_BEV
PEPLOMER GLYCOPROTEIN
BERNE VIRUS
48-82
1145-
1184-
1505-



PRECURSOR


1179
1211
1532


PVGLY_JUNIN
GLYCOPROTEIN POLYPROTEIN
JUNIN ARENAVIRUS
14-41



PRECURSO


PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN
LASSA VIRUS (STRAIN GA391)
86-113



PRECURSO


PVGLY_MOPEI
GLYCOPROTEIN POLYPROTEIN
MOPEIA VIRUS
86-113
316-346



PRECURSO


PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN
PICHINDE ARENAVIRUS
334-375



PRECURSO


PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS
109-136
315-350



PRECURSO


PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS (STRAIN V5)
303-338



PRECURSO


PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS (STRAIN V7)
302-337



PRECURSO


PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS (STRAIN TRVL 11598)
303-338



PRECURSO


PVGNM_CPSMV
GENOME POLYPROTEIN M
COWPEA SEVERE MOSAIC VIRUS (STRAIN DG)
192-221


PVGP8_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
104-149



ANTIGEN GP85


PVGP_EBOV
STRUCTURAL GLYCOPROTEIN
EBOLA VIRUS
280-314



PRECURSO


PVGP_MABVM
STRUCTURAL GLYCOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
559-589
619-646



PRECURSO


PVGP_MABVP
STRUCTURAL GLYCOPROTEIN
MARBURG VIRUS (STRAIN POPP)
559-589
619-646



PRECORSO


PVH05_VACCC
PROTEIN H5
VACCINIA VIRUS (STRAIN COPENHAGEN)
132-166


PVH05_VACCV
PROTEIN H5
VACCINIA VIRUS (STRAIN WR)
132-166


PVH05_VARV
PROTEIN H5
VARIOLA VIRUS
64-91
150-184


PVHEL_LSV
PROBABLE HELICASE
LILY SYMPTOMLESS VIRUS
130-160


PVHRP_VACCC
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
241-275


PVHRP_VACCV
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
241-275


PV101_VACCC
PROTEIN I1
VACCINIA VIRUS (STRAIN COPENHAGEN)
90-117
153-180


V101_VARV
PROTEIN I1
VARIOLA VIRUS
90-117
153-180


V103_VACCC
PROTEIN I3
VACCINIA VIRUS (STRAIN COPENHAGEN)
160-190


V103_VACCV
PROTEIN I3
VACCINIA VIRUS (STRAIN WR)
160-190


V103_VARV
PROTEIN I3
VARIOLA VIRUS
160-190


V108_VACCC
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN COPENHAGEN)
290-317
548-575
593-632


V108_VACCV
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN WR)
290-317
548-575
593-632


V108_VARV
PUTATIVE RNA HELICASE 18
VARIOLA VIRUS)
290-317
548-575
593-632


VIE1_MCMVS
IMMEDIATE-EARLY PROTEIN 1
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
261-288


VIE2_NPVOP
IMMEDIATE-EARLY

ORGYIA PSEUDOTSUGATA MULTICAPSID
355-385



PROTEIN IE-2
POLYHEDROSIS VIRUS


VIEN_NPVAC
IE-REG PROTEIN IE-N

AUTOGRAPHA CALIFORNICA NUCLEAR
217-325
343-400




POLYHEDROSIS VIRUS


VIF_HV1RH
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
62-89




(RF/HAT ISOLATE)


VIF_SIVAI
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
2-36




(ISOLATE AGM/CLONE GRI-1)


VIMP_HSVEB
PROB INTEGRAL MEMBRANE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
147-174



PROTEIN


VIMP_HSVSA
INTEGRAL MEMBRANE
HERPESVIRUS SAIMIRI (STRAIN 11)
80-107



PROTEIN


VINT_SSV1
PROBABLE INTEGRASE
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
73-100


VJ01_VACCC
PROTEIN J1
VACCINIA VIRUS (STRAIN COPENHAGEN)
22-56


VJ01_VACCV
PROTEIN J1
VACCINIA VIRUS (STRAIN WR)
22-56


VJ01_VARV
PROTEIN J1
VARIOLA VIRUS
22-56


VL1_CRPVK
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS
331-383




(STRAIN KANSAS)


VL1_FPVL
PROBABLE L1 PROTEIN
AVIAN PAPILLOMAVIRUS FPV-L
38-65


VL1_HPV08
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
354-392


VL1_HPV18
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
183-210


VL1_HPV33
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
19-46


VL1_HPV41
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
345-372


VL1_HPV51
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
19-46


VL1_HPV58
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
45-72


VL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
407-445


VL2_HPV41
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
415-442


VL3_REOVD
MINOR CORE PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
330-357



LAMBDA 3


VL3_REOVL
MINOR CORE PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
330-357



LAMBDA 3


VL96_IRV1
L96 PROTEIN
TIPULA IRIDESCENT VIRUS
146-180
625-652


PVM1_REOVL
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
290-317



PROTEIN MU


PVM21_REOVD
MAJOR VIRION STRUC PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
625-662



MU-1/MU-


PVM22_REOVD
MAJOR VIRION STRUC PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
624-661



MU-1/MU-


PVM2_REOVJ
MAJOR VIRION STRUC PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
624-661



MU-1/MU-


PVM3_REOVD
MAJOR NONSTRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
159-186
343-370
456-483
631-690



PROTEIN MU-N


PVMA2_BRSVA
MATRIX GLYCOPROTEIN M2
BOVINE RESPIRATORY SYNCYTIAL VIRUS
124-152




(STRAIN A51908)


PVMA2_HRSVA
MATRIX GLYCOPROTEIN M2
HUMAN RESPIRATORY SYNCYTIAL VIRUS
124-151



(STRAIN A2)


PVMAT_BRSVA
MATRIX PROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS
219-246





(STRAIN A51908)


PVMAT_HRSVA
MATRIX PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
219-246




(STRAIN A2)


PVMAT_INCJJ
MATRIX (M) PROTEIN
INFLUENZA C VIRUS (STRAIN C/JJ/50)
151-185


PVMAT_NDVA
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
247-274




AUSTRALIA-VICTORIA/32)


PVMAT_PI2HT
MATRIX PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
96-123




(STRAIN TOSHIBA)


PVMAT_PI3B
MATRIX PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
201-231


PVMAT_PI3H4
MATRIX PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
201-231




(STRAIN NIH 47885)


PVMAT_SV41
MATRIX PROTEIN
SIMIAN VIRUS 41
323-353


PVME1_CVBM
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
175-209


PVME1_CVTKE
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS
175-209


PVME1_IBV6
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-48
184-218




(STRAIN 6/82)


PVME1_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-48
184-218




(STRAIN BEAUDETTE)


PVME1_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
21-48
184-218




(STRAIN BEAUDETTE M42)


PVME1_IBVK
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
184-218




(STRAIN KB8523)


PVMP_CAMVC
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
220-254
273-324


PVMP_CAMVD
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
29-56
220-254
273-324


PVMP_CAMVE
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
227-254
273-324


PVMP_CAMVN
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
220-254
273-324


PVMP_CAMVS
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
220-254
273-324




(STRAIN STRASBOURG)


PVMP_CAMVW
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
220-254
273-324


PVMP_CERV
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS
26-53
100-127


PVMP_SOCMV
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
4-31
78-118


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN
HERON HEPATITIS B VIRUS
294-328



PRECURSOR


PVMT1_DHVI1
MATRIX PROTEIN 1
DHORI VIRUS (STRAIN INDIAN/1313/61)
38-65
237-264


PVMT8_MYXVL
M-T8 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
163-190


PVMT9_MYXVL
MT-9 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
465-492


PVN34_ROTPC
NONSTRUCTURAL PROTEIN
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
83-113



NS34


PVNCN_PAVBO
PROBABLE NONCAPSID
BOVINE PARVOVIRUS
149-176



PROTEIN NP1


PVNCS_ADVG
NONCAPSID PROTEIN NS-1
ALEUTIAN MINK DISEASE PARVOVIRUS (STRAIN G)
86-148


PVNCS_AEDEV
NONCAPSID PROTEIN NS-1
AEDES DENSONUCLEOSIS VIRUS
14-41
279-339
487-517
585-612
780-817
821-848




(STRAIN GK V 002 002)


PVNCS_MUMIM
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS (STRAIN MVMI)
35-62
262-289


PVNCS_MUMIV
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS
35-62
262-289


PVNCS_PAVHB
NONCAPSID PROTEIN NS-1
HUMAN PARVOVIRUS B19
236-270


PVNCS_PAVHH
NONCAPSID PROTEIN NS-1
HAMSTER PARVOVIRUS H1
35-62


PVNCS_PAVPN
NONCAPSID PROTEIN NS-1
PORCINE PARVOVIRUS (STRAIN NADL-2)
24-55
169-196
316-346


PVNS1_EHDV2
NONSTRUCTURAL PROTEIN NS1
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
411-438




(SEROTYPE 2/STRAIN ALBERTA)


PVNS1_IAALA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77)
171-198


PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
171-198


PVNS1_IACHI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
171-198


PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/CHICKEN/GERMANY/N/49)


PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
168-195




A/CHICKEN/JAPAN/24)


PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/DUCK/ALBERTA/60/76)


PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/FORT MONMOUTH/1/47)


PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/FORT/WARREN/1/50)


PVNS1_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/LENINGRAD/134/57)


PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/MALLARD/ALBERTA/88/76)


PVNS1_IAPI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/PINTAIL/ALBERTA/121/79)


PVNS1_IAPI3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/PINTAIL/ALBERTA/358/79)


PVNS1_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/TURKEY/BETHLEHEM-GLILIT/1492-B/82)


PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/TURKEY/CANADA/63)


PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/TERN/TURKMENIA/18/72)


PVNS1_IAUDO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
171-198


PVNS1_IAUSS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
171-198


PVNS1_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN B/PA/79)
171-198


PVNS2_IATKR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN
87-114




A/TURKEY/OREGON/71)


PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/LEE/40)
51-78


PVNS2_INBYA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73)
51-78


PVNS2_INCJJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA C VIRUS (STRAIN C/JJ/50)
71-98


PVNS3_CVPFS
NONSTRUCTURAL PROTEIN 3-1
PORCINE TRANSMISSIBLE GASTROENTERITIS
9-36




CORONAVIRUS (STRAIN FS772


PVNS4_CVH22
NONSTRUCTURAL PROTEIN 4
HUMAN CORONAVIRUS (STRAIN 229E)
9-36


PVNS4_RSV
NONSTRUCTURAL PROTEIN NS4
RICE STRIPE VIRUS
6-40


PVNS7_CVCAE
NONSTRUCTURAL PROTEIN 7
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
11-45


PVNS7_CVFE3
NONSTRUCTURAL PROTEIN 7
FELINE ENTERIC CORONA VIRUS
8-42




(STRAIN 79-1683)


PVNS7_CVPFS
NONSTRUCTURAL PROTEIN 7
PORCINE TRANSMISSIBLE GASTROENTERITIS
34-61




CORONAVIRUS (STRAIN FS772


PVNS7_CVPPU
NONSTRUCTURAL PROTEIN 7
PORCINE TRANSMISSIBLE GASTROENTERITIS
34-61




CORONAVIRUS (STRAIN PURD


PVNS7_CVPRM
NONSTRUCTURAL PROTEIN 7
PORCINE RESPIRATORY CORONAVIRUS
34-61


PVNS7_FIPV
NONSTRUCTURAL PROTEIN 7
FELINE INFECTIOUS PERITONITS VIRUS
8-42




(STRAIN 79-1146)


PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
41-75




(STRAIN CI-14/83)


PVNSC_PI3H4
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 3 VIRUS
58-99




(STRAIN NIH 47885)


PVNSM_INSV
NONSTRUCTURAL PROTEIN
IMPATIENS NECROTIC SPOT VIRUS
262-296



NS-M


PVNST_BUNLC
NONSTRUCTURAL PROTEIN
BUNYAVIRUS LA CROSSE
57-84



NS-S


PVNST_TOSV
NONSTRUCTURAL PROTEIN
TOSCANA VIRUS
146-180



NS-S


PVNUC_EBOV
NUCLEOPROTEIN
EBOLA VIRUS
311-369


PVNUC_IAANA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/ANAS ACUTA/PRIMORJE/695/76)


PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/ANN ARBOR/6/60)


PVNUC_IABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78)
378-405


PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/BUDGERIGAR/HOKKAIDO/1/77)


PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/CALIFORNIA/10/78)


PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/CHICKEN/GERMANY/N/49)


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/CHICKEN/PENNSYLVANIA/1/83)


PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/AUSTRALIA/749/80)


PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/BEIJING/1/78)


PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/CZECHOSLOVAKIA/56)


PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/ENGLAND/1/)


PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/ENGLAND/1/62)


PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/HONG KONG/7/75)


PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/MEMPHIS/928/74)


PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/MANITOBA/1/53)


PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/NEW ZEALAND/31/76)


PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/UKRAINE/2/60)


PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/ENGLAND/19/55)


PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/FORT MONMOUTH/1/47)


PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/FORT WARREN/1/50)


PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/FOWL PLAGUE VIRUS/DOBSON/‘DUTCH’/27)


PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/FOWL PLAGUE VIRUS/ROSTOCK/34)


PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/GREY TEAL/AUSTRALIA/2/79)


PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/GULL/MARYLAND/5/77)


PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/GULL/MARYLAND/704/77)


PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/GULL/MARYLAND/1824/78)


PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/GULL/MARYLAND/1815/79)


PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/GULL/ASTRAKHAN/227/84)


PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/GULL/MASSACHUSETTS/26/80)


PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/GULL/MINNESOTA/945/80)


PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HICKOX/40)
378-405


PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/EQUINE/JILLIN/1/89)


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/EQUINE/LONDON/1416/73)


PVNUC_IAHMI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/EQUINE/MIAMI/1/63)


PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/68)
378-405


PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83)
378-405


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/EQUINE/PRAGUE/1/56)


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/EQUINE/TENNESSEE/5/86)


PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
378-405


PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
378-405


PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/MALLARD/ASTRAKHAN/244/82)


PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/MALLARD/NEW YORK/6750/78)


PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/MINK/SWEDEN/84)


PVNUC_IANEJ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/NEW JERSEY/8/76)


PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
378-405


PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/OHIO/4/83)
378-405


PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/PARROT/ULSTER/73)


PVNUC_IAUPE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/PUERTO RICO/8/34)


PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/RUDDY TURNSTONE/NEW JERSEY/47/85)


PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SEAL/MASSACHUSETTS/1/80)


PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SHEARWATER/AUSTRALIA/72)


PVNUC_IAS1N
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SINGAPORE/1/57)


PVNUC_IATE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/TEAL/ICELAND/29/80)


PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/TURKEY/MINNESOTA/1661/81)


PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/TURKEY/ONTARIO/7732/66)


PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/TERN/SOUTH AFRICA/61)


PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/TERN/TURKMENIA/18/72)


PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77)
378-405


PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
378-405


PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
378-405


PVNUC_IAVI6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/VICTORIA/5/68)
378-405


PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/WHALE/MAINE/328/84)


PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/WHALE/PACIFIC OCEAN/19/76)


PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/WILSON-SMITH/33)


PVNUC_IAWIS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/WISCONSIN/3523/88)


PVNUC_IAZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/29/37)
378-405


PVNUC_IAZ41
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/41/49)
378-405


PVNUC_IAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/CAMBRIDGE/1/35)


PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/DANDONG/9/83)


PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/GERMANY/2/81)


PVNUC_IAZH1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/HONG KONG/6/76)


PVNUC_IAZH3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/HONG KONG/126/82)


PVNUC_IAZH4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/HONG KONG/127/82)


PVNUC_IAZI1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/IOWA/15/30)


PVNUC_IAZI2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/IOWA/1976/31)


PVNUC_IAZI3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46)
378-405


PVNUC_IAZJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/ITALY/437/76)


PVNUC_JAZJ2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/ITALY/2/79)


PVNUC_IAZJ3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/ITALY/141/81)


PVNUC_JAZJ4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/ITALY/839/89)


PVNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/JAMESBURG/42)


PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54)
378-405


PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/NETHERLANDS/12/85)


PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/OHIO/23/35)


PVNUC_IAZON
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/ONTARIO/2/81)


PVNUC_IAZTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/TENNESSEE/24/77)


PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/WISCONSIN/1/57)


PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/WISCONSIN/1/61)


PVNUC_INCCA
NUCLEOPROTEIN
INFLUENZA C VIRUS (STRAIN
99-126
416-443
451-478




C/CALIFORNIA/78)


PVNUC_MABVM
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
366-407


PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
366-407


PVO01_VACCC
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-37
109-138
581-608


PVO01_VARV
PROTEIN O1
VARIOLA VIRUS
7-37
109-138
581-608


PVOR1_FXMV
152 KD PROTEIN
FOXTAIL MOSAIC VIRUS
1023-





1050


PVOR1_NMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS
996-1023
1527-






1561


PVOR1_PMV
176 KD PROTEIN
PAPAYA MOSAIC POTEXVIRUS
948-978
1481-






1532


PVOR1_PVMR
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN)
597-627


PVOR1_PVX
165 KD PROTEIN
POTATO VIRUS X
698-725
1017-






1044


PVOR1_PVXX3
165 KD PROTEIN
POTATO VIRUS X (STRAIN X3)
698-725
1017-






1044


PVOR1_SMYEA
150 KD PROTEIN
STRAWBERRY MILD YELLOW EDGE-ASSOCIATED
312-342
691-721




VIRUS


PVP10_NPVAC
P10 PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
7-41




POLYHEDROSIS VIRUS


PVP10_NPVOP
P10 PROTEIN

ORGYIA PSEUDOTSUGATA MULTICAPSID
7-48




POLYHEDROSIS VIRUS


PVP10_NPVSE
P10 PROTEIN

SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS
6-33
37-64




VIRUS (STRAIN US)


PVP10_RGDV
NONSTRUCTURAL PROTEIN
RICE GALL DWARF VIRUS
205-242



PNS10


PVP10_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
151-181
227-254



PNS10


PVP11_RDV
NONSTRUCTURAL PROTEIN
RICE DWARF VIRUS
53-80



PNS11


PVP12_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
81-108



PNS12


PVP18_WTVNJ
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS (STRAIN NJ)
81-108



PNS12


PVP19_AMCV
CORE PROTEIN P19
ARTICHOKE MOTTLED CRINKLE VIRUS
73-100


PVP19_TBSVC
CORE PROTEIN P19
TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY)
73-100


PVP23_HSVSA
PROBABLE CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
2-29



VP23


PVP26_HSVEB
CAPSID PROTEIN VP26
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
36-63


PVP26_HSVSA
CAPSID PROTEIN VP26
HERPESVIRUS SAIMIRI (STRAIN 11)
48-75


PVP2_AHSV4
OUTER CAPSID PRPOTEIN VP2
AFRICAN HORSE SICKNESS VIRUS
277-304
410-437
632-662
907-934




(SEROTYPE 4/STRAIN VACCINE)


PVP2_BTV13
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
815-846


PVP2_BTV1A
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE
898-925




1/ISOLATE AUSTRALIA)


PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE
119-146




1/ISOLATE SOUTH AFRICA)


PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
72-103
415-453




(SEROTYPE 1)


PVP2_ROTBR
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
39-94
523-553


PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
39-94
524-554


PVP2_ROTHW
RNA-BINDING PROTEIN VP2
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
70-101
533-567


PVP2_ROTPC
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
52-99
128-156
518-545
705-746


PVP2_ROTS1
RNA-BINDING PROTEIN VP2
SIMIAN 11 ROTOVIRUS (STRAIN SA11)
36-96


PVP30_ASFE7
PHOSPHOPROTEIN P30
AFRICAN SWINE FEVER VIRUS (STRAIN E-75)
39-75


PVP32_ASFB7
PHOSPHOPROTEIN P32
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
39-75


PVP35_EBOV
POLYMERASE COMPLEX
EBOLA VIRUS
83-119



PROTEIN VP35


PVP35_MABVM
POLYMERASE COMPLEX
MARBURG VIRUS (STRAIN MUSOKE)
80-107
231-258



PROTEIN VP35


PVP35_MABVP
POLYMERASE COMPLEX
MARBURG VIRUS (STRAIN POPP)
80-107
231-258



PROTEIN VP35


PVP35_NPVAC
EARLY 35 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
270-297




POLYHEDROSIS VIRUS


PVP35_NPVBM
EARLY 35 KD PROTEIN
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
68-102


PVP35_VACCV
IMMUNODOM ENV PRO P35
VACCINIA VIRUS (STRAIN WR)
178-205


PVP39_NPVAC
MAJOR CAPSID PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
134-161
264-291




POLYHEDROSIS VIRUS


PVP39_NPVOP
MAJOR CAPSID PROTEIN

ORGYIA PSEUDOTSUGATA MULTICAPSID
263-290




POLYHEDROSIS VIRUS


PVP3_AHSV4
VP3 CORE PROTEIN
AFRICAN HORSE SICKNESS VIRUS
132-159




(SEROTYPE 4/STRAIN VACCINE)


PVP3_BTV10
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
214-252


PVP3_BTV17
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
214-252


PVP3_BTV1A
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
214-252




AUSTRALIA)


PVP3_EHDV1
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
209-243
798-832




(SEROTYPE 1)


PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
798-832




(SEROTYPE 2/STRAIN AUSTRAL


PVP3_GFLV
P3 PROTEIN
GRAPEVINE FANLEAF VIRUS
99-133


PVP3_ROTPC
INNER CORE PROTEIN VP3
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
39-66
329-384


PVP3_ROTS1
INNER CORE PROTEIN VP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
26-67
350-377
451-497
619-692


PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN B95-8)
440-470


PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI (STRAIN 11)
205-232
344-372


PVP40_ILTVT
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS
515-549




(STRAIN THORNE V882)


PVP40_VZVD
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
174-208
495-522


PVP41_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
8-35
589-619


PVP42_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
8-35
584-622


PVP4A_VACCC
MAJOR CORE PROTEIN P4A
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-75



PRECURSOR


PVP4A_VACCV
MAJOR CORE PROTEIN P4A
VACCINIA VIRUS (STRAIN WR)
48-75



PRECURSOR


PVP4A_VARV
MAJOR CORE PROTEIN P4A
VARIOLA VIRUS
48-75



PRECURSOR


PVP4B_FOWPV
MAJOR CORE PROTEIN P4B
FOWLPOX VIRUS
80-110



PRECURSOR


PVP4B_VACCC
MAJOR CORE PROTEIN P4B
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-37



PRECURSOR


PVP4B_VACCV
MAJOR CORE PROTEIN P4B
VACCINIA VIRUS (STRAIN WR)
7-37



PRECURSOR


PVP4B_VARV
MAJOR CORE PROTEIN P4B
VARIOLA VIRUS
7-37



PRECURSOR


PVP4_BTV10
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
34-61
576-603


PVP4_BTV11
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
34-61
576-603


PVP4_BTV13
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
34-61
576-603


PVP4_BTV2A
OUTER CAPSID PROTEIN VP4
NEBRASKA CALF DIARRHEA VIRUS
552-622




(STRAIN NCDV-LINCOLN)


PVP4_NCDV
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641)
595-629


PVP4_ROTB4
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN C486)
8-35
584-622


PVP4_ROTBC
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN UK)
595-629


PVP4_ROTBU
OUTER CAPSID PROTEIN VP4
EQUINE ROTAVIRUS (STRAIN H-2)
112-146
235-269
552-629


PVP4_ROTEH
OUTER CAPSID PROTEIN VP4
ROTAVIRUS (GROUP B/STRAIN IDIR)
5-32


PVP4_ROTG1
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076)
8-35
572-628


PVP4_ROTH1
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5)
8-35
279-306
565-621


PVP4_ROTH5
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M)
8-35
112-139
584-629


PVP4_ROTH6
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M)
8-35
279-306
565-621


PVP4_ROTHD
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
8-35
279-306
565-621


PVP4_ROTHJ
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN K8)
8-35
111-138


PVP4_ROTHK
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN KU)
8-35
77-104
279-306
577-621


PVP4_ROTHL
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN L26)
8-35
279-306
565-621


PVP4_ROTHM
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
8-35
572-610


PVP4_ROTHN
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN MCN13)
8-35
573-628


PVP4_ROTHP
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
8-35
577-621


PVP4_ROTHR
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV)
8-38
105-135
235-262


PVP4_ROTHT
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN
8-35
572-627




ST. THOMAS 3)


PVP4_ROTHV
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70)
8-35
279-306
590-617


PVP4_ROTHW
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
8-35
577-621


PVP4_ROTP5
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
112-146
584-625


PVP4_ROTPC
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
5-33
115-161
293-320


PVP4_ROTPG
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
8-35
572-628


PVP4_ROTPY
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN YM)
8-35
112-146
584-625


PVP4_ROTRH
OUTER CAPSID PROTEIN VP4
RHESUS ROTARVIRUS
8-38
584-622


PVP4_ROTSF
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11-FEM)
8-35
589-619


PVP4_ROTSS
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11-SEM)
8-35
130-157
584-622


PVP4_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
28-62



PNS4


PVP5_AHSV4
OUTER CAPSID PROTEIN VP5
AFRICAN HORSE SICKNESS VIRUS
113-183
191-218




(SEROTYPE 4/STRAIN VACCINE)


PVP5_BTV10
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
53-80
99-126


PVP5_BTV11
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
53-80
92-126


PVP5_BTV13
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
53-80


PVP5_BTV1A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
53-80
89-126




AUSTRALIA)


PVP5_BTV1S
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
53-80
92-126
148-182




SOUTH AFRICA)


PVP5_BTV2A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
53-80
89-126


PVP5_EHDV1
OUTER CAPSID PROTEIN VP5
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
31-80
191-218
399-426




(SEROTYPE 1)


PVP5_WTV
OUTER COAT PROTEIN P5
WOUND TUMOR VIRUS
648-675


PVP61_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
161-193


PVP61_MRDV
PROB NONSTRUCT 41.0 KD PRO
MAIZE ROUGH DWARF VIRUS
153-202


PVP61_NPVAC
61 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
36-63




POLYHEDROSIS VIRUS


PVP62_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
157-189


PVP64_NPVOP
MAJOR ENV GLYCOPRO

ORGYIA PSEUDOTSUGATA MULTICAPSID
45-72



PRECURSOR
POLYHEDROSIS VIRUS


PVP67_NPVAC
MAJOR ENV GLYCOPRO

AUTOGRAPHA CALIFORNICA NUCLEAR
44-81



PRECURSOR
POLYHEDROSIS VIRUS


PVP6_BTV11
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
157-189


PVP6_BTV13
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
157-189


PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
157-189


PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
161-193




SOUTH AFRICA)


PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
133-172


PVP6_RDV
STRUCTURAL PROTEIN P6
RICE DWARF VIRUS
10-37
354-381


PVP74_NPVAC
P74 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
413-440




POLYHEDROSIS VIRUS


PVP75_HSVSA
PROBABLE MEMBRANE
HERPESVIRUS SAIMIRI (STRAIN 11)
181-208
929-977



ANTIGEN 75


PVP79_NPVAC
79 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
44-78
370-397




POLYHEDROSIS VIRUS


PVP7_EHDV1
VP7 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
16-43




(SEROTYPE 1)


PVP7_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
458-485



PNS7


PVP80_NPVAC
CAPSID PROTEIN P80

AUTOGRAPHA CALIFORNICA NUCLEAR
101-142
240-298




POLYHEDROSIS VIRUS


PVP87_NPVOP
CAPSID PROTEIN P87

ORGYIA PSEUDOTSUGATA MULTICAPSID
132-159




POLYHEDROSIS VIRUS


PVP8_BTV10
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
105-132


PVP8_FOWPV
STRUCTURAL PROTEIN VP8
FOWLPOX VIRUS
211-238



PRECURSOR


PVP8_WTV
OUTER CAPSID PROTEIN P8
WOUND TUMOR VIRUS
29-56
112-143


PVP9_RDV
NONSTRUCTURAL PROTEIN
RICE DWARF VIRUS
197-224



PNS9


PVP9_WTV
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS
22-49


PVP9_WTNVJ
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS (STRAIN NJ)
22-49


PVPHE_NPVAC
29 KD POLYHEDRAL ENVELOPE

AUTOGRAPHA CALIFORNICA NUCLEAR
196-223



PROTEIN
POLYHEDROSIS VIRUS


PVPHE_NPVOP
32 KD POLYHEDRAL ENVELOPE

ORGYIA PSEUDOTSUGATA MULTICAPSID
127-186
238-265



PROTEIN
POLYHEDROSIS VIRUS


PVPRT_ADEM1
ENDOPROTEASE
MOUSE ADENOVIRUS TYPE 1
167-194


PVPU_HV1A2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-31




(ARV2/SF2 ISOLATE)


PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-48




(BH10 AND HXB3 ISOLATES)


PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
21-48




(BH8 ISOALTE)


PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
22-49




(BRAIN ISOLATE)


PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-48




(BRU ISOLATE)


PVPU_HV1C4
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
3-30




(CDC-451 ISOLATE)


PVPU_HV1EL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
6-33




(ELI ISOLATE)


PVPU_HV1H2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-48




(HXB2 ISOLATE)


PVPU_HV1J3
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
2-29




(JH3 ISOLATE)


PVPU_HV1JR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
22-49




(JRCSF ISOLATE)


PVPU_HV1MA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-32




(MAL ISOLATE)


PVPU_HV1ND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
6-33




(NDK ISOLATE)


PVPU_HV1PV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
5-48




(PV22 ISOLATE)


PVPU_HV1S1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
22-49




(SF162 ISOLATE)


PVPU_SIVCZ
VPU PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
51-78


PVPX_LDV
VPX PROTEIN
LACTATE DEHYDROGENASE-ELEVATING VIRUS
64-94


PVRNA_BSMV
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS
1051-





1078


PVS06_ROTBS
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
6-43


PVS06_ROTGA
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
114-144


PVS06_ROTGI
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
28-55


PVS06_ROTHC
VP6 PROTEIN
HUMAN ROTAVIRUS
9-44


PVS06_ROTPC
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
9-44


PVS07_ROTBJ
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KN-4)
2-29


PVS07_ROTBU
NONSTRUCTURAL PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
91-146
199-236



NCVP3


PVS07_ROTP5
NONSTRUCTURAL PROTEIN
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
91-146
202-236



NCVP3


PVS07_ROTS1
NONSTRUCTURAL PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
91-146
199-236



NCVP3


PVS08_ROTBU
NONSTRUCTURAL PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
164-201



NS2/VP9


PVS08_ROTS1
NONSTRUCTURAL PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
164-201
217-251



NCVP4


PVS09_ROTB4
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641)
2-29


PVS09_ROTB5
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A5)
2-29


PVS09_ROTBU
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN UK)
2-29


PVS09_ROTGA
GLYCOPROTEIN VP7
ROTAVIRUS (GROUP B/STRAIN ADRV)
210-237



PRECURSOR


PVS09_ROTH4
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN RV-4)
2-29


PVS09_ROTHA
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HU5)
2-29


PVS09_ROTHB
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE G/STRAIN B37)
2-29


PVS09_ROTHD
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
2-29


PVS09_ROTHH
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HN126)
2-29


PVS09_ROTHM
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
2-29


PVS09_ROTHO
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN MO
2-29




AND STRAIN D)


PVS09_ROTHP
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
2-29


PVS09_ROTHS
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2)
2-29


PVS09_ROTHW
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
2-29


PVS09_ROTP2
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN AT/76)
2-29


PVS09_ROTP3
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN CRW-8)
2-29


PVS09_ROTS1
GLYCOPROTEIN VP7
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
2-29


PVS10_ROTBS
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
125-152


PVS10_ROTS1
NONSTRUCTURAL GLYCO-
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
113-140



PROTEIN NCVP5


PVS11_ROTBU
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
13-40
114-145


PVS11_ROTBV
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN VMRI)
13-40
114-145


PVS11_ROTGA
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
31-60




(ADULT DIARRHEA ROTAVIRUS)


PVS11_ROTH5
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5)
13-40
111-145


PVS11_ROTHD
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
13-40
111-145


PVS11_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
111-145


PVS11_ROTRA
MINOR OUTER CAPSID PROTEIN
RABBIT ROTAVIRUS (STRAIN ALABAMA)
118-145


PVS11_ROTS1
MINOR OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
111-146


PVSH_MUMP1
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS
9-46


PVSH_MUMPA
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MATSUYAMA)
12-41


PVSH_MUMPB
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BELFAST)
9-41


PVSH_MUMPE
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN ENDERS)
9-46


PVSH_MUMPJ
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN JERYL-LYNN)
9-46


PVSH_MUMPK
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN KILHAM)
9-46


PVSH_MUMPL
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BRISTOL 1)
9-46


PVSH_MUMPM
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
12-41


PVSH_MUMPR
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN RW)
9-41


PVSH_MUMPU
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN URABE VACCINE AM9)
12-41


PVSI1_REOVD
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 3/STRAIN DEARING)
26-63
71-122
127-168
222-259


PVSI1_REOVJ
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 2/STRAIN D5/JONES)
4-104
130-193


PVSI1_REOVL
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 1/STRAIN LANG)
4-52
75-104
112-160


PVSI2_REOVD
SIGMA 2 PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
350-384


PVSI3_REOVJ
SIGMA 3 PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
289-316


PVSIS_REOVD
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
90-117


PVSIS_REOVL
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
50-77


PVT3A_CAPV1
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
124-158


PVT5_SFVKA
PROTEIN T5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
250-277


PVTER_EBV
PROBABLE DNA PACKAGING
EPSTEIN-BARR VIRUS (STRAIN B95-8)
234-290



PROTEIN


PVTER_HCMVA
PROBABLE DNA PACKAGING
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
417-451



PROTEIN


PVTER_HSV6U
PROBABLE DNA PACKAGING
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
176-203



PROTEIN
UGANDA-1102)


PVTER_HSVI1
PROBABLE DNA PACKAGING
ICTALURID HERPESVIRUS 1
710-737



PROTEIN


PVTER_VZVD
PROBABLE DNA PACKAGING
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
394-321



PROTEIN


PVTP3_TTV1V
VIRAL PROTEIN TPX
THERMOPROTEUS TENAX VIRUS 1 (STRAIN VT3)
169-196


PVTPX_TTV1
VIRAL PROTEIN TPX
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
169-196


PVV_PI4HA
V PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS
4-38




(STRAIN TOSHIBA)


PY101_SSV1
HYPOTHETICAL 10.1 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
25-65



PROTEIN


PY108_SSV1
HYPOTHETICAL 10.8 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
4-61



PROTEIN


PY119_SSV1
HYPOTHETICAL 11.9 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
30-78



PROTEIN


PY11K_TYDVA
HYPOTHETICAL 11.2 KD
TOBACCO YELLOW DWARF VIRUS
53-87



PROTEIN
(STRAIN AUSTRALIA)


PY13K_NPVAC
HYPOTH 13.1 KD IN 39 KD

AUTOGRAPHA CALIFORNICA NUCLEAR
85-112



5′REGION
POLYHEDROSIS VIRUS


PY13K_SSV1
HYPOTHETICAL 13.2 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
59-86



PROTEIN


PY14K_SSV1
HYPOTHETICAL 13.7 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
5-39



PROTEIN


PY16K_NPVAC
HYPOTH IN 39 KD PROTEIN

AUTOGRAPHA CALIFORNICA NUCLEAR
80-107



5′REGION
POLYHEDROSIS VIRUS


PY16K_SSV1
HYPOTHETICAL 15.6 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
77-111



PROTEIN


PY17K_SSV1
HYPOTHETICAL 17.8 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
9-36
119-153



PROTEIN


PY18K_MSVN
HYPOTHETICAL 17.7 KD
MAIZE STREAK VIRUS (NIGERIAN ISOLATE)
34-61



PROTEIN


PY18K_MSVS
HYPOTHETICAL 17.2 KD
MAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE)
34-61



PROTEIN


PY20K_SSV1
HYPOTHETICAL 20.4 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
76-103



PROTEIN


PY28K_SSV1
HYPOTHETICAL 28.5 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
93-164



PROTEIN


PY2_SOCMV
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE VIRUS
118-148


PY31K_SSV1
HYPOTHETICAL 31.5 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
24-97



PROTEIN


PY32K_SSV1
HYPOTHETICAL 31.7 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
233-267



PROTEIN


PY38K_NPVAC
HYPOTHETICAL 37.7 KD

AUTOGRAPHA CALIFORNICA NUCLEAR
133-184



PROTEIN
POLYHEDROSIS VIRUS


PY3_SOCMV
HYPOTHETICAL PROTEIN 3
SOYBEAN CHLOROTIC MOTTLE VIRUS
122-149


PY7_SOCMV
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE VIRUS
56-94


PY85K_SSV1
HYPOTHETICAL 85.7 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
81-121
546-573
658-700



PROTEIN


PY8_SOCMV
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE VIRUS
13-40


PYB01_FOWPM
HYPOTHETICAL BAMHI-ORF1
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
74-108
152-179
184-218



PROTEIN


PYB05_FOWPM
HYPOTHETICAL BAMHI-ORF5
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
62-89



PROTEIN


PYB10_FOWPM
HYPOTHETICAL BAMHI-ORF10
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
162-197
214-241



PROTEIN


PYB12_FOWPM
HYPOTHETICAL BAMHI-ORF12
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
11-38



PROTEIN


PYB13_FOWPM
HYPOTHETICAL BAMHI-ORF13
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
128-167



PROTEIN


PYBL3_FOAMV
BEL-3 PROTEIN
HUMAN SPUMARETROVIRUS
87-116


PYDH1_HSVS7
HYPOTH 24.1 KD IN DHFR
HERPESVIRUS SAIMIRI (STRAIN 484-77)
161-188



3′REGION


PYDH1_HSVSC
HYPOTH 28.7 KD IN DHFR
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
52-82



3′REGION


PYDH4_HSVSC
HYPOTH 9.9 KD IN DHFR
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
53-83



3′REGION


PYF26_FOWP1
HYPOTHETICAL 25.9 KD
FOWLPOX VIRUS (STRAIN FP-1)
8-35



PROTEIN


PYF30_FOWP1
HYPOTHETICAL 30.9 KD
FOWLPOX VIRUS (STRAIN FP-1)
170-204



PROTEIN


PYH22_VACCV
HYPOTH 21.7 KD HINDIII-C PRO
VACCINIA VIRUS (STRAIN WR)
37-64
95-126
144-171


PYHR3_VACCV
HYPOTH HOST RANGE 27.4 KD
VACCINIA VIRUS (STRAIN WR)
31-58
179-206



PRO


PYKR2_EBV
HYPOTHETICAL BKRF2
EPSTEIN-BARR VIRUS (STRAIN B95-8)
90-121



PROTEIN


PYKR4_EBV
HYPOTHETICAL BKRF4
EPSTEIN-BARR VIRUS (STRAIN B95-8)
19-53



PROTEIN


PYL15_ADE41
HYPOTH 12.4 KD IN 33 KD
HUMAN ADENOVIRUS TYPE 41
47-86



REGION


PYLR3_EBV
HYPOTHETICAL BLRF3 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
27-54


PYOR1_COYMV
HYPOTHETICAL 23 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
94-143


PYOR2_COYMV
HYPOTHETICAL 15 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
35-76


PYOR3_WCMVM
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN M)
64-94


PYOR3_WCMVO
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN O)
65-95


PYOR5_ADEG1
HYPOTHETICAL 31.5 KD
AVIAN ADENOVIRUS GALI (STRAIN PHELPS)
92-119



PROTEIN


PYORA_TTV1
HYPOTHETICAL 8.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
23-57


PYORL_TTV1
HYPOTHETICAL 26.8 KD
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
15-42



PROTEIN


PYORQ_TTV1
HYPOTHETICAL 7.3 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
3-31



PROTEIN


PYORW_TTV1
HYPOTHETICAL 12.1 KD
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
4-40



PROTEIN


PYP12_RTBV
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
44-71


PYP12_RTBVP
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
44-71




(ISOLATE PHILIPPINES)


PYP24_RTBV
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
59-101
106-157


PYP24_RTBVP
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
51-101
106-157




(ISOLATE PHILIPPINES)


PYP46_RTBV
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
58-107
197-231


PYP46_RTBVP
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
58-107
197-231




(ISOLATE PHILIPPINES)


PYP63_NPVAC
HYPOTH PRO P6.5 5′REGION

AUTOGRAPHA CALIFORNICA NUCLEAR
44-71




POLYHEDROSIS VIRUS


PYP63_NPVOP
HYPOTH 40.0 KD IN P6.5

ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS
325-352



5′REGION


PYPOH_NPVAC
HYPOTH 23.6 KD IN

AUTOGRAPHA CALIFORNICA NUCLEAR
116-153



POLYHEDRIN 5′REGION
POLYHEDROSIS VIRUS


PYPOL_IPNVN
HYPOTHETICAL 17.0 KD
INFECTIOUS PANCREATIC NECROSIS VIRUS
5-32



PROTEIN
(STRAIN N1)


PYQ3_AMEPV
HYPOTHETICAL PROTEIN IN
AMSACTA MOOREI ENTOMOPOXVIRUS
8-57
59-96
156-183



TK 3′REGION


PYRF1_HSV6G
HYPOTHETICAL PROTEIN RF1
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
208-235


PYRF2_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
223-257
268-299


PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
141-168


PYRF4_HSV6G
HYPOTHETICAL PROTEIN RF4
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
404-441


PYRP2_IRV6
REPETITIVE PROTEIN ORF2
CHILO IRIDESCENT VIRUS
10-45


PYVAG_VACCC
HYPOTHETICAL 9.3 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-34


PYVAH_VACCC
HYPOTHETICAL 14.5 KD
VACCINIA VIRUS (STRAIN COPENHAGEN)
81-112



PROTEIN


PYVDB_VACCC
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
29-77


PYVDB_VACCV
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
46-77


PYVDH_VACCV
HYPOTHETICAL 7.2 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
20-50


PYVGB_VACCC
HYPOTHETICAL 8.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
10-44


PYZL2_EBV
HYPOTHETICAL BZLF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
152-179
















TABLE VII







107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY


(PREFERRED VIRAL SEQUENCES)


















PCGENE
107 × 178 × 4
All Viruses (no bacteriophages)











FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9





PPOL_MLVAK
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
453-480










PENV_MLVAV
ENV POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
517-544


PPOL_MLVAV
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
805-832


PMYC_AVIM2
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS
232-266
375-402




VIRUS CMII


PMYC_AVIMD
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS
233-267
376-403




VIRUS HBI


PMYC_AVIMC
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS
233-267
376-403




VIRUS MC29


VL1_FPVL
PROBABLE L1 PROTEIN
AVIAN PAPILLOMA VIRUS
38-65




FPV-L


PVGLB_HSVB1
GLYCOPROTEIN I
BOVINE HERPES VIRUS TYPE 1
427-454



PRECURSOR


PRIR2_HSVB3
RIBONUC-DIPHOSPH REDUCT
BOVINE HERPES VIRUS TYPE 1
90-117



SMALL CHA
(STRAIN 34)


PVGLB_HSVB2
GLYCOPROTEIN B-1
BOVINE HERPES VIRUS TYPE 2
447-474



PRECURSOR
(STRAIN BMV)


PENV_BIV06
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
17-44
544-603
631-695




VIRUS (ISOLATE 106)


PENV_BIV27
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
17-44
573-632
660-724




(ISOLATE 127)


PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(AMERICAN ISOLATE FLK)


PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(AMERICAN ISOLATE VDM)


PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(AUSTRALIAN ISOLATE)


PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
311-377




(BELGIUM ISOLATE LB285)


PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(BELGIUM ISOLATE LB59)


PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(JAPANESE ISOLATE BLV-1)


PHEMA_PI3B
HEMAGGLUTININ-
BOVINE PARAINFLUENZA 3
66-93



NEURAMINIDASE
VIRUS


PRRPP_PI3B
RNA POLYMERASE ALPHA
BOVINE PARAINFLUENZA 3
34-91
255-282
285-314



SUBUNIT
VIRUS


PVGLF_PI3B
FUSION GLYCOPROTEIN
BOVINE PARAINFLUENZA 3
115-182
207-241
459-497



PRECURSOR
VIRUS


PVMAT_PI3B
MATRIX PROTEIN
BOVINE PARAINFLUENZA 3
201-231




VIRUS


PRRPP_BRSVA
RNA POLYMERASE ALPHA
BOVINE RESPIRATORY
99-133



SUBUNIT
SYNCYTIAL VIRUS (STRAIN




A51908)


PVGLF_BRSVA
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
38-65
154-202
216-243
442-469
486-531



PRECURSOR
SYNCYTIAL VIRUS (STRAIN




A51908)


PVMA2_BRSVA
MATRIX GLYCOPROTEIN M2
BOVINE RESPIRATORY
124-152




SYNCYTIAL VIRUS (STRAIN




A51908)


PVMAT_BRSVA
MATRIX PROTEIN
BOVINE RESPIRATORY
219-246




SYNCYTIAL VIRUS (STRAIN




A51908)


PVGLF_BRSVC
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
38-65
154-202
216-243
444-471
488-533



PRECURSOR
SYNCYTIAL VIRUS (STRAIN




COPENHAGEN)


PVGLG_BRSVC
MAJOR SURFACE
BOVINE RESPIRATORY
92-123



GLYCOPROTEIN G
SYNCYTIAL VIRUS (STRAIN




COPENHAGEN)


PVGLF_BRSVR
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
38-65
154-202
216-243
444-471
488-533



PRECURSOR
SYNCYTIAL VIRUS (STRAIN




RB94)


PENV_MLVCB
ENV POLYPROTEIN
CAS-BR-E MURINE LEUKEMIA
510-539




VIRUS


PENV_SIVCZ
ENV POLYPROTEIN
CHIMPANZEE IMMUNO-
160-187
253-289
336-366
526-584
627-654




DEFICIENCY VIRUS


PVPU_SIVCZ
VPU PROTEIN
CHIMPANZEE IMMUNO-
51-78




DEFICIENCY VIRUS


PPOL_SIVCZ
POL POLYPROTEIN
CHIMPANZEE IMMUNO-
242-269
626-685




DEFICIENCY VIRUS (SIV(CPZ))


PVE2_CRPVK
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE)
5-34




PAPILLOMAVIRUS (STRAIN




KANSAS)


VL1_CRPVK
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE)
331-383




PAPILLOMAVIRUS (STRAIN




KANSAS)


PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN
1858-1885
2890-2935
2989-3016




SINGAPORE S275/90)


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1544-1571
1858-1885
2908-2935
2982-3016
3117-3147




16681)


PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1544-1571
1858-1885
2485-2519
2908-2935
2982-3016
3117-3147




16681-PDK53)


PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1544-1571
1858-1885
2908-2935
3117-3147
3346-3373




JAMAICA)


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1544-1571
1858-1885
2905-2932
2979-3013
3114-3144
3343-3370




PR159/S1)


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
1134-1161
1448-1475




TONGA 1974)


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
837-864
1542-1569
1857-1884
2494-2521
2980-3014
3345-3372


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
2885-2930
2977-3011
3342-3369


PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39




SHANGHAI DUCK ISOLATE S5)


PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39




(STRAIN CHINA)


PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39
304-331




(WHITE SHANGHAI DUCK




ISOLATE S31)


PTEGU_EBV
LARGE TEGUMENT
EPSTEIN-BARR VIRUS (STRAIN
145-172
1215-1242
1344-1371
1876-1903



PROTEIN
B95-8)


PUL06_EBV
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN
115-142
313-340
542-569




B95-8)


PUL11_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
15-42



BBLF1
B95-8)


PUL52_EB
PROB DNA REPLICATION
EPSTEIN-BARR VIRUS (STRAIN
185-212
787-814



PROTEIN BBLF1
B95-8)


PUL87_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
409-436



B(C)RF1
B95-8)


PUL92_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
107-144
168-196



BDLF4
B95-8)


PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
847-874




B95-8)


PVGL2_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
68-102



GLYCOPROTEIN
B95-8)


PVGLB_EBV
GLYCOPROTEIN GP110
EPSTEIN-BARR VIRUS (STRAIN
95-122
631-658



PRECURSOR
B95-8)


PVGLH_EBV
GLYCOPROTEIN GP85
EPSTEIN-BARR VIRUS (STRAIN
549-576
619-648



PRECURSOR
B95-8)


PVGP8_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
104-149



ANTIGEN GP85
B95-8)


PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN
440-470




B95-8)


PVTER_EBV
PROBABLE DNA
EPSTEIN-BARR VIRUS (STRAIN
234-290



PACKAGING PROTEIN
B95-8)


PYKR2_EBV
HYPOTHETICAL BKRF2
EPSTEIN-BARR VIRUS (STRAIN
90-21



PROTEIN
B95-8)


PYKR4_EBV
HYPOTHETICAL BKRF4
EPSTEIN-BARR VIRUS (STRAIN
19-53



PROTEIN
B95-8)


PYLR3_EBV
HYPOTHETICAL BLRF3
EPSTEIN-BARR VIRUS (STRAIN
27-54



PROTEIN
B95-8)


PYZL2_EBV
HYPOTHETICAL BZLF2
EPSTEIN-BARR VIRUS (STRAIN
152-179



PROTEIN
B95-8)


PBZLF_EBV
BZLF1 TRANS-ACTIVATOR
EPSTEIN-BARR VIRUS (STRAIN
193-220



PROTEIN
B95-8)


PDNB1_EBV
MAJOR DNA-BINDING
EPSTEIN-BARR VIRUS (STRAIN
977-1004
1041-1068



PROTEIN
B95-8)


PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN
55-82




B95-8)


PLMP1_EBV
LATENT MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
148-175



PROTEIN 1
B95-8)


PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
294-321




B95-8)


PLMP1_EBVC
LATENT MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
148-175



PROTEIN 1
CAO)


PLMP1_EBVR
LATENT MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
148-175



PROTEIN 1
RAJI)


PUL32_HSVEB
MAJOR ENVELOPE
EQUINE HERPESVIRUS TYPE 1
345-375



GLYCOPROTEIN 300


PVGLC_HSVEB
GLYCOPROTEIN C
EQUINE HERPESVIRUS TYPE 1
124-151



PRECURSOR


PVGLB_HSVE1
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
443-470
934-961



PRECURSOR
(ISOLATE HVS25A)


PVGLB_HSVEA
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
443-470
934-961



PRECURSOR
(STRAIN AB1)


PATI2_HSVEB
ALPHA TRANS-IND FACTOR
EQUINE HERPESVIRUS TYPE 1
294-321



82 KD PRO
(STRAIN AB4P)


PATIN_HSVEB
ALPHA TRANS-IND PROTEIN
EQUINE HERPESVIRUS TYPE 1
255-289




(STRAIN AB4P)


PHELI_HSVEB
PROBABLE HELICASE
EQUINE HERPESVIRUS TYPE 1
184-211
321-348




(STRAIN AB4P)


PRIRI_HSVEB
RIBONUC-DIPHOSPH
EQUINE HERPESVIRUS TYPE 1
 75-102



REDUCT LARGE CHAS
(STRAIN AB4P)


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1
229-256
566-593
1205-1232




(STRAIN AB4P)


PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1
640-667




(STRAIN AB4P)


PUL14_HSVEB
HYPOTHETICAL GENE 48
EQUINE HERPESVIRUS TYPE 1
247-286



PROTEIN
(STRAIN AB4P)


PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1
44-71




(STRAIN AB4P)


PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1
715-749
 987-1014




(STRAIN AB4P)


PUL52_HSVEB
DNA REPLICATION PROTEIN
EQUINE HERPESVIRUS TYPE 1
193-220
943-970



UL52
(STRAIN AB4P)


PVG03_HSVEB
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1
146-176




(STRAIN AB4P)


PVGLB_HSVEB
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
443-470
934-961



PRECURSOR
(STRAIN AB4P)


PVGLG_HSVEB
GLYCOPROTEIN G
EQUINE HERPESVIRUS TYPE 1
383-410



PRECURSOR
(STRAIN AB4P)


VIMP_HSVEB
PROB INTEGRAL MEMBRANE
EQUINE HERPESVIRUS TYPE 1
147-174



PROTEIN
(STRAIN AB4P)


PVP26_HSVEB
CAPSI PROTEIN VP26
EQUINE HERPESVIRUS TYPE 1
36-63




(STRAIN AB4P)


PVG03_HSVEK
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1
146-176




(STRAIN KENTUCKY A)


PVGLB_HSVEL
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
443-470
933-960



PRECURSOR
(STRAIN KENTUCKY D)


PCELF_HSVEB
CELL FUSION PROTEIN
EQUINE HERPESVIRUS TYPE 1
312-339



PRECURSOR
(STRAINS AB4P and Ky A)


PUL47_HSVE4
97 KD ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE 4
190-27


PVGLB_HSVE4
GLYCOPROTEIN B
EQUINE HERPES VIRUS TYPE 4
486-513
616-643



PRECURSOR


PVGLG_HSVE4
GLYCOPROTEIN G
EQUINE HERPES VIRUS TYPE 4
271-298



PRECURSOR


PDUT_HSVE4
DEOXYU 5′-TRIPHOSPH
EQUINE HERPESVIRUS TYPE 4
 90-117



NUCHYDROLASE
(STRAIN 1942)


PVE2_PAPVE
PROBABLE E2 PROTEIN
EUROPEAN ELK PAPILLOMA-
120-150




VIRUS


PENV_FIVPE
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY
650-680
722-749




VIRUS (ISOLATE PETALUMA)


PPOL_FIVPE
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY
442-473




VIRUS (ISOLATE PETALUMA)


PENV_FIVSD
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY
639-668
720-747




VIRUS (ISOLATE SAN DIEGO)


PENV_FIVT2
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY
640-679
721-748




VIRUS (ISOLATE TM2)


PENV_FLVC6
ENV POLYPROTEIN
FELINE LEUKEMIA PROVIRUS
509-538




(CLONE CFE-6)


PMYC_FLVTT
MYC TRANSFORMING
FELINE LEUKEMIA PROVIRUS
393-420



PROTEIN
FTT


PMYC_FLV
MYC TRANSFORMING
FELINE LEUKEMIA VIRUS
393-420



PROTEIN


PENV_FLVGL
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
490-519




(STRAIN A/GLASGOW-1)


PENV_FLVLB
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
510-539




(STRAIN LAMBDA-B1)


PENV_FLVSA
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
487-516




(STRAIN SARMA)


PENV_MLVF5
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
523-553




VIRUS (ISOLATE 57)


PENV_MLVTF
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
523-553




VIRUS (ISOLATE FB29)


PENV_MLVFP
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
523-553




VIRUS (ISOLATE PVC-211)


PENV_GALV
ENV POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
176-203
523-564


PGAG_GALV
GAG POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
396-442
447-474


PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
535-562
676-703


PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS
271-325




VIRUS


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1117-1149
1454-1481




18F)


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1117-1149
1454-1481




24A)


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1117-1149
1454-1481




43C)


PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237




CR326)


PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
182-216




GA76)


PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1103-1149




HM-175)


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1103-1149




LA)


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN
203-237
1021-1048
1103-1149




MBB)


PDPOL_HPBVP
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
456-483




ADW/STRAIN PHILIPPINO/




PFDW294)


PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
443-470




ADYW)


PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
702-729


PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
702-729
1045-1072




BK)


PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H)
702-729
1045-1072


PPOLG_HCJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
374-401
2089-2116




HC-J6)


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
1049-1076
2089-2116




HC-J8)


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
702-729
1045-1072




HC-JT)


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
378-405
702-729
1045-1072




JAPANESE)


PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
702-729
1045-1072




TAIWAN)


PAANT_HDVAM
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133




(ISOLATE AMERICAN)


PAANT_HDVD3
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133




(ISOLATE AMERICAN)


PAANT_HDVS1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
16-43
106-133




(ISOLATE AMERICAN)


PAANT_HDVS2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
16-43
106-133




(ISOLATE AMERICAN)


PAANT_HDVWO
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133




(ISOLATE AMERICAN)


PAANT_HDVIT
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133




(ISOLATE AMERICAN)


PAANT_HDVM2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS
106-133




(ISOLATE AMERICAN)


PPOLN_HEVBU
NON-STRUCTURAL POLY-
HEPATITIS E VIRUS (STRAIN
219-246
349-376



PROTEIN
BURMA)


PPOLN_HEVME
NON-STRUCTURAL POLY-
HEPATITIS E VIRUS (STRAIN
219-246
349-376



PROTEIN
MEXICO)


PPOLN_HEVMY
N-STRUCTURAL POLY-
HEPATITIS E VIRUS (STRAIN
219-246
349-376



PROTEIN
MYANMAR)


PPOLN_HEVPA
NON-STRUCTURAL POLY-
HEPATITIS E VIRUS (STRAIN
218-245
348-375



PROTEIN
PAKISTAN)


PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
5-39


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN
HERON HEPATITIS B VIRUS
294-328



PRECURSOR


PIE63_HSV11
TRANSCRIPTIONAL
HERPES SIMPLEX VIRUS
248-275



REGULATOR IE63
(TYPE 1/STRAIN 17)


PIE68_HSV11
IMMEDIATE-EARLY
HERPES SIMPLEX VIRUS
40-67



PROTEIN IE68
(TYPE 1/STRAIN 17)


PTEGU_HSV11
LARGE TEGUMENT
HERPES SIMPLEX VIRUS
667-694
1673-1710



PROTEIN
(TYPE 1/STRAIN 17)


PUL06_HSV11
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS
586-613




(TYPE 1/STRAIN 17)


PUL34_HSV11
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS
116-143




(TYPE 1/STRAIN 17)


PUL37_HSV11
PROTEIN UL37
HERPES SIMPLEX VIRUS
470-497
853-884




(TYPE 1/STRAIN 17)


PUL42_HSV11
DNA-BINDING PROTEIN UL42
HERPES SIMPLEX VIRUS
231-258




(TYPE 1/STRAIN 17)


PUL47_HSV11
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS
488-515




(TYPE 1/STRAIN 17)


PVGLC_HSV11
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
469-510



PRECURCOR
(TYPE 1/STRAIN 17)


PAT12_HSV11
ALPHA TRANS-IND FACTOR
HERPES SIMPLEX VIRUS
308-335



78 KD PRO
(TYPE 1/STRAIN 17)


PUL47_HSV1F
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS
488-515




(TYPE 1/STRAIN F)


PAT12_HSV1F
ALPHA TRANS-IND FACTOR
HERPES SIMPLEX VIRUS
308-335



77 KD PRO
(TYPE 1/STRAIN F)


PVGLC_HSV1K
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
469-510



PRECURSOR
(TYPE 1/STRAIN KOS)


PVGLE_HSV2
GLYCOPROTEIN E
HERPES SIMPLEX VIRUS
111-148



PRECURSOR
(TYPE 2)


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
102-129
228-262
567-611
962-993
1098-1181
1661-1688
1884-1911




(TYPE 6/STRAIN GS)


PVGLH_HSV6G
GLYCOPROTEIN H
HERPES SIMPLEX VIRUS
62-89
360-403



PRECURSOR
(TYPE 6/STRAIN GS)


PYRF1_HSV6G
HYPOTHETICAL PROTEIN RF1
HERPES SIMPLEX VIRUS
208-235




(TYPE 6/STRAIN GS)


PYRF2_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS
223-257
268-299




(TYPE 6/STRAIN GS)


PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS
141-168




(TYPE 6/STRAIN GS)


PYRF4_HSV6G
HYPOTHETICAL PROTEIN RF4
HERPES SIMPLEX VIRUS
404-441




(TYPE 6/STRAIN GS)


PP100_HSV6J
MAJOR ANTIGENIC
HERPES SIMPLEX VIRUS
81-108
189-216
688-715
785-812



STRUCTL PROTEIN
(TYPE 6/STRAIN UGANDA-1102)


PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS
536-563
729-768




(TYPE 6/STRAIN UGANDA-1102)


PUL95_HSV6U
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS
 73-100
105-134




(TYPE 6/STRAIN UGANDA-1102)


PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS
136-170
355-382




(TYPE 6/STRAIN UGANDA-1102)


PVTER_HSV6U
PROBABLE DNA PACKAGING
HERPES SIMPLEX VIRUS
176-203



PROTEIN
(TYPE 6/STRAIN UGANDA-1102)


PTYSY_HSVAT
THYMIDYLATE SYNTHASE
HERPESVIRUS ATELES
116-143


PDPOL_HSVSA
DNA POLYMERASE
HERPESVIRUS SAIMIRI
625-652




(STRAIN 11)


PDUT_HSVSA
DEOXYU 5′-TRIPHOSPH
HERPESVIRUS SAIMIRI
179-213



NUCHYDROLASE
(STRAIN 11)


PHEL1_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI
418-449




(STRAIN 11)


PIC18_HSVSA
PROBABLE PROC &
HERPESVIRUS SAIMIRI
58-85
482-522



TRANSPORT PRO
(STRAIN 11)


PIE68_HSVSA
IMMEDIATE-EARLY PROTEIN
HERPESVIRUS SAIMIRI
48-78




(STRAIN 11)


PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI
340-386




(STRAIN 11)


PRIR1_HSVSA
RIBONUC-DIPHOSPH
HERPESVIRUS SAIMIRI
324-351



REDUCT LARGE CHA
(STRAIN 11)


PTEGU_HSVSA
PROBABLE LARGE
HERPESVIRUS SAIMIRI
524-607
672-700
777-814
846-898
949-986
 990-1017
1467-1497
2102-2135



TEGUMENT PROTEIN
(STRAIN 11)


PTYSY_HSVSA
THYMIDYLATE SYNTHASE
HERPESVIRUS SAIMIRI
120-147




(STRAIN 11)


PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI
15-42
302-358
368-402




(STRAIN 11)


PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI
34-61
204-231
362-389




(STRAIN 11)


PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI
208-235




(STRAIN 11)


PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI
31-65
685-737




(STRAIN 11)


PUL52_HSVSA
PROB DNA REP GENE 56
HERPESVIRUS SAIMIRI
130-157



PROTEIN
(STRAIN 11)


PUL73_HSVSA
HYPOTHETICAL GENE 53
HERPESVIRUS SAIMIRI
 9-36



PROTEIN
(STRAIN 11)


PUL87_HSVSA
HYPOTHETICAL GENE 24
HERPESVIRUS SAIMIRI
582-609



PROTEIN
(STRAIN 11)


PUL92_HSVSA
HYPOTHETICAL GENE 31
HERPESVIRUS SAIMIRI
92-122



PROTEIN
(STRAIN 11)


PUNG_HSVSA
URACIL-DNA GLYCOSYLASE
HERPESVIRUS SAIMIRI
135-176




(STRAIN 11)


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI
769-799




(STRAIN 11)


PVG45_HSVSA
HYPOTHETICAL GENE 45
HERPESVIRUS SAIMIRI
138-165



PROTEIN
(STRAIN 11)


PVG48_HSVSA
HYPOTHETICAL GENE 48
HERPESVIRUS SAIMIRI
360-394



PROTEIN
(STRAIN 11)


PVG52_HSVSA
HYPOTHETICAL GENE 52
HERPESVIRUS SAIMIRI
47-74



PROTEIN
(STRAIN 11)


PVGLH_HSVSA
GLYCOPROTEIN H
HERPESVIRUS SAIMIRI
388-415



PRECURSOR
(STRAIN 11)


VIMP_HSVSA
INTEGRAL MEMBRANE
HERPESVIRUS SAIMIRI
 80-107



PROTEIN
(STRAIN 11)


PVP23_HSVSA
PROBABLE CAPSID PROTEIN
HERPESVIRUS SAIMIRI
 2-29



VP23
(STRAIN 11)


PVP26_HSVSA
CAPSID PROTEIN VP26
HERPESVIRUS SAIMIRI
48-75




(STRAIN 11)


PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI
205-232
344-372




(STRAIN 11)


PVP75_HSVSA
PROBABLE MEMBRANE
HERPESVIRUS SAIMIRI
181-208
929-977



ANTIGEN 75
(STRAIN 11)


PDNBI_HSVSA
MAJOR DNA-BINDING
HERPESVIRUS SAIMIRI
333-368
512-539



PROTEIN
(STRAIN 11)


PCGH2_HSVSA
CYCLIN HOMOLOG
HERPESVIRUS SAIMIRI
127-154




(STRAIN 11)


PYDH1_HSVS7
HYPOTH 24.1 KD IN DHFR
HERPESVIRUS SAIMIRI
161-188



3′REGION
(STRAIN 484-77)


PYDH1_HSVSC
HYPOTH 28.7 KD IN DHFR
HERPESVIRUS SAIMIRI
52-82



3′REGION
(SUBGROUP C/STRAIN 488)


PYDH4_HSVSC
HYPOTH 9.9 KD IN
HERPESVIRUS SAIMIRI
53-83



3′REGION
(SUBGROUP C/STRAIN 488)


PENV_MLVHO
ENV POLYPROTEIN
HOMULV MURINE LEUKEMIA
510-540




VIRUS


PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS
753-780




(STRAIN AD169)


PIC18_HCMVA
PROB PROC 7 TRANSPORT
HUMAN CYTOMEGALOVIRUS
294-324



PRO UL56
(STRAIN AD169)


PIR05_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
22-49



IRL5
(STRAIN AD169)


PIR12_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
 74-162



IRL12
(STRAIN AD169)


PIR13_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
31-62



IRL13
(STRAIN AD169)


PRIR1_HCMVA
RIBONUC-DIPHOSPH
HUMAN CYTOMEGALOVIRUS
622-649



REDUCT LARGE CHA
(STRAIN AD169)


PTEGU_HCMVA
PROBABLE LARGE
HUMAN CYTOMEGALOVIRUS
1251-1281
2202-2229



TEGUMENT PROTEIN
(STRAIN AD169)


PUL08_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
 6-47



UL8
(STRAIN AD169)


PUL13_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
347-374



UL13
(STRAIN AD169)


PUL16_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
 81-112



UL16
(STRAIN AD169)


PUL20_HCMVA
HYPOTH PRO UL20
HUMAN CYTOMEGALOVIRUS
34-61



PRECURSOR
(STRAIN AD169)


PUL31_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
167-194
254-284



UL31
(STRAIN AD169)


PUL35_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
533-562



UL35
(STRAIN AD169)


PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS
114-148
448-485
763-790
802-853




(STRAIN AD169)


PUL50_HCMVA
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS
159-186




(STRAIN AD169)


PUL59_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
 74-101



UL59
(STRAIN AD169)


PUL70_HCMVA
PROB DNA REP PROTEIN UL70
HUMAN CYTOMEGALOVIRUS
65-92




(STRAIN AD169)


PUL73_HCMVA
UL73 GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS
 5-73



PRECURSOR
(STRAIN AD169)


PUL74_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
45-79



UL74
(STRAIN AD169)


PUL93_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS
26-53
314-381




(STRAIN AD169)


PUL95_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
37-71



UL95
(STRAIN AD169)


PULA4_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS
 4-31
443-477




(STRAIN AD169)


PULB9_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
33-78



UL119
(STRAIN AD169)


PULD0_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
 90-124



UL130
(STRAIN AD169)


PUS09_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
20-47



HXLF3
(STRAIN AD169)


PUS14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
277-308



HVLF4
(STRAIN AD169)


PUS18_HCMVA
MEMBRANE PROTEIN
HUMAN CYTOMEGALOVIRUS
191-218



HWLF5
(STRAIN AD169)


PVGLB_HCMVA
GLYCOPROTEIN B
HUMAN CYTOMEGALOVIRUS
25-88
397-424
440-467
851-878



PRECURSOR
(STRAIN AD169)


PVGLH_HCMVA
GLYCOPROTEIN H
HUMAN CYTOMEGALOVIRUS
107-136
270-297



PRECURSOR
(STRAIN AD169)


PVGLI_HCMVA
IE GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS
 47-111



PRECURSOR
(STRAIN AD169)


PVTER_HCMVA
PROBABLE DNA
HUMAN CYTOMEGALOVIRUS
417-451



PACKAGING PROTEIN
(STRAIN AD169)


PDNBI_HCMVA
MAJOR DNA-BINDING
HUMAN CYTOMEGALOVIRUS
437-464



PROTEIN
(STRAIN AD169)


PV30K_HCMVE
30 KD MAJOR EARLY
HUMAN CYTOMEGALOVIRUS
194-221



PROTEIN
(STRAIN EISENHARDT)


PVGLB_HCMVT
GLYCOPROTEIN B
HUMAN CYTOMEGALOVIRUS
50-88
397-424
435-462
852-879



PRECURSOR
(STRAIN TOWNE)


PVGLH_HCMVT
GLYCOPROTEIN H
HUMAN CYTOMEGALOVIRUS
106-135



PRECURSOR
(STRAIN TOWNE)


PENV_HV1A2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
544-592
630-682
790-825




VIRUS TYPE 1 (ARV2/SF2




ISOLATE)


PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
 91-118




VIRUS TYPE 1 (ARV2/SF2




ISOLATE)


PPOL_HV1A2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
218-245
620-661




VIRUS TYPE 1 (ARV2/SF2




ISOLATE)


PVPU_HV1A2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
 3-31




VIRUS TYPE 1 (ARV2/SF2




ISOLATE)


PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
 5-48




VIRUS TYPE 1 (BH10 AND




HXB3 ISOLATES)


PENV_HV1B1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
631-683
791-818




VIRUS TYPE 1 (BH10 ISOLATE)


PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
230-257
637-673




VIRUS TYPE 1 (BH10 ISOLATE)


PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
230-257
632-673




VIRUS TYPE 1 (BH5 ISOLATE)


PENV_HV1B8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
540-589
626-678
786-813




VIRUS TYPE 1 (BH8 ISOLATE)


PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
21-48




VIRUS TYPE 1 (BH8 ISOLATE)


PENV_HV1BN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
267-294
338-365
562-590
628-679
787-815




VIRUS TYPE 1 (BRAIN ISOLATE)


PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
22-49




VIRUS TYPE 1 (BRAIN ISOLATE)


PENV_HV1BR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
550-599
636-688
796-823




VIRUS TYPE 1 (BRU ISOLATE)


PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
230-257
632-673




VIRUS TYPE 1 (BRU ISOLATE)


PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
 5-48




VIRUS TYPE 1 (BRU ISOLATE)


PENV_HV1C4
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
397-424
557-606
643-695
803-835




VIRUS TYPE 1 (CDC-451




ISOLATE)


PVPU_HV1C4
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
 3-30




VIRUS TYPE 1 (CDC-451




ISOLATE)


PENV_HV1EL
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
255-296
386-413
543-591
628-680




VIRUS TYPE 1 (ELI ISOLATE)


PNEV_HV1EL
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
 81-119




VIRUS TYPE 1 (ELI ISOLATE)


PPOL_HVIEL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
624-660




VIRUS TYPE 1 (ELI ISOLATE)


PVPU_HV1EL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
 6-33




VIRUS TYPE 1 (ELI ISOLATE)


PENV_HV1H2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
631-683
791-818




VIRUS TYPE 1 (HXB2 ISOLATE)


PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
218-245
620-661
921-951




VIRUS TYPE 1 (HXB2 ISOLATE)


PVPU_HV1H2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
 5-48




VIRUS TYPE 1 (HSB2 ISOLATE)


PENV_HV1H3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
631-683
791-818




VIRUS TYPE 1 (HSB3 ISOLATE)


PENV_HV1J3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
350-377
556-605
642-694
802-829




VIRUS TYPE 1 (JH3 ISOLATE)


PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
 91-118




VIRUS TYPE 1 (JH3 ISOLATE)


PVPU_HV1J3
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
 2-29




VIRUS TYPE 1 (JH3 ISOLATE)


PENV_HV1JR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
336-363
622-675
783-811




VIRUS TYPE 1 (JRCSF ISOLATE)


PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
222-249
624-665




VIRUS TYPE 1 (JRCSF ISOLATE)


PVPU_HV1JR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
22-49




VIRUS TYPE 1 (JRCSF ISOLATE)


PENV_HV1MA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
547-595
633-707
794-826




VIRUS TYPE 1 (MAL ISOLATE)


PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
476-510
619-660




VIRUS TYPE 1 (MAL ISOLATE)


PVPU_HV1MA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
5-32




VIRUS TYPE 1 (MAL ISOLATE)


PENV_HV1MF
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
543-592
629-681
789-816




VIRUS TYPE 1 (MFA ISOLATE)


PENV_HV1MN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
343-370
567-595
632-684
791-819




VIRUS TYPE 1 (MN ISOLATE)


PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
 87-118




VIRUS TYPE 1 (MN ISOLATE)


PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
221-248
623-664




VIRUS TYPE 1 (MN ISOLATE)


PENV_HV1ND
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
249-290
536-583
621-673
783-813




VIRUS TYPE 1 (NDK ISOLATE)


PNEF_HV1ND
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
 81-119




VIRUS TYPE 1 (NDK ISOLATE)


PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
624-660




VIRUS TYPE 1 (NDK ISOLATE)


PVPU_HV1ND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
 6-33




VIRUS TYPE 1 (NDK ISOLATE)


PENV_HV1N5
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
326-360




VIRUS TYPE 1 (NEW YORK-5




ISOLATE


PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
218-245
625-661




VIRUS TYPE 1 (NEW YORK-5




ISOLATE


PENV_HV1OY
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
544-591
630-704
789-820




VIRUS TYPE 1 (OY1 ISOLATE)


PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
218-245
620-661




VIRUS TYPE 1 (OY1 ISOLATE)


PENV_HV1PV
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
631-683
791-818




VIRUS TYPE 1 (PV22 ISOLATE)


PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
230-257
637-673




VIRUS TYPE 1 (PV22 ISOLATE)


PVPU_HV1PV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
5-48




VIRUS TYPE 1 (PV22 ISOLATE)


PENV_HV1RH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
280-307
351-378
554-602
640-692
800-832




VIRUS TYPE 1 (RF/HAT




ISOLATE)


PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
619-660




VIRUS TYPE 1 (RF/HAT




ISOLATE)


VIF_HV1RH
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY
62-89




VIRUS TYPE 1 (RF/HAT




ISOLATE)


PENV_HV1SC
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
338-365
545-593
631-683




VIRUS TYPE 1 (SC ISOLATE)


PENV_HV1S1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
333-363
536-585
622-674
782-809




VIRUS TYPE 1 (SF162 ISOLATE)


PVPU_HV1S1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY
22-49




VIRUS TYPE 1 (SF162 ISOLATE)


PENV_HV1S3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
541-589
627-679
787-815




VIRUS TYPE 1 (SF33 ISOLATE)


PENV_HV1KB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
274-301
555-596
637-677
776-824




VIRUS TYPE 1 (STRAIN




KB-1-GP32)


PPOL_HVIU4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
513-540
619-660




VIRUS TYPE 1 (STRAIN




UGANDAN/ISOLATE U)


PENV_HV1W1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
338-365
545-593
631-683
791-818




VIRUS TYPE 1 (WMJ1 ISOLATE)


PENV_HV1W2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
334-361
536-584
622-674
782-809




VIRUS TYPE 1 (WMJ2 ISOLATE)


PENV_HV1Z8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
266-307
573-601
634-678
797-828




VIRUS TYPE 1 (Z-84 ISOLATE)


PENV_HV1Z2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
255-296
542-591
628-680
790-820




VIRUS TYPE 1 (Z2/CDC-Z34




ISOLATE)


PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
217-244
619-660




VIRUS TYPE 1 (Z2/CDC-Z34




ISOLATE)


PENV_HV1Z3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
251-292




VIRUS TYPE 1 (ZAIRE 3




ISOLATE)


PENV_HV1Z6
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
256-297
545-593
630-682
792-822




VIRUS TYPE 1 (ZAIRE 6




ISOLATE)


PNEF_HV1Z6
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
 86-124




VIRUS TYPE 1 (ZAIRE 6




ISOLATE)


PENV_HZ1ZH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
545-594
627-666
791-823




VIRUS TYPE 1 (ZAIRE HZ321




ISOLATE)


PENV_HV2BE
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
61-88
532-591
621-648
653-697




VIRUS TYPE 2 (ISOLATE BEN)


PGAG_HV2BE
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
 88-115




VIRUS TYPE 2 (ISOLATE BEN)


PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
491-582




VIRUS TYPE 2 (ISOLATE BEN)


PENV_HV2CA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
534-593
623-650
655-699




VIRUS TYPE 2 (ISOLATE CAM2)


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
471-562




VIRUS TYPE 2 (ISOLATE CAM2)


PENV_HV2D1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
61-88
523-550
555-582
644-688




VIRUS TYPE 2 (ISOLATE D194)


PGAG_HV2D1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
 88-115




VIRUS TYPE 2 (ISOLATE D194)


PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
509-600




VIRUS TYPE 2 (ISOLATE D194)


PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
491-568




VIRUS TYPE 2 (ISOLATE D205,7)


PENV_HV2G1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
60-87
524-551
556-583
613-640
645-693




VIRUS TYPE 2 (ISOLATE




GHANA-1)


PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
471-562




VIRUS TYPE 2 (ISOLATE




GHANA-1)


PENV_HV2NZ
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
61-88
524-551
556-583
613-640
662-689




VIRUS TYPE 2 (ISOLATE NIH-Z)


PGAG_HV2NZ
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
 88-115




VIRUS TYPE 2 (ISOLATE NIH-Z)


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
471-529




VIRUS TYPE 2 (ISOLATE NIH-Z)


PENV_HV2RO
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
58-85
533-592
622-698




VIRUS TYPE 2 (ISOLATE ROD)


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
472-563




VIRUS TYPE 2 (ISOLATE ROD)


PENV_HV2SB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
557-584
614-673




VIRUS TYPE 2 (ISOLATE SBLISY)


PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
473-562




VIRUS TYPE 2 (ISOLATE SBLISY)


PENV_HV2ST
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY 442-476
527-554
559-586
648-692




VIRUS TYPE 2 (ISOLATE ST)


PGAG_HV2ST
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
88-115




VIRUS TYPE 2 (ISOLATE ST)


PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
491-582




VIRUS TYPE 2 (ISOLATE ST)


PENV_HV2S2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY
442-476
527-554
559-586
648-682




VIRUS TYPE 2 (ISOLATE ST/24




1C#2)


PVE4_HPV11
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
 81-108




TYPE 11


PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
30-60




TYPE 11


PVE2_HPV13
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
157-184
334-361




TYPE 13


PVE2_HPV16
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
 61-105
312-342




TYPE 16


PVE4_PPV16
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
66-93




TYPE 16


PVE1_HPV18
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
60-87




TYPE 18


PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
313-340




TYPE 18


PVE4_HPV18
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
59-86




TYPE 18


PVE6_HPV18
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
 75-102




TYPE 18


VL1_HPV18
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
183-210




TYPE 18


PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
159-186




TYPE 1A


VL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
407-445




TYPE 1A


PVE1_HPV2A
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
21-48




TYPE 2A


PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
159-193




TYPE 2A


PVE4_HPV31
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
 75-102




TYPE 31


PVE6_HPV31
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
69-96




TYPE 31


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
180-207




TYPE 33


PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
304-331




TYPE 33


VL1_HPV33
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
19-46




TYPE 33


PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
158-192
327-354




TYPE 35


PVE5_HPV35
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
27-54




TYPE 35


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
103-130




TYPE 39


PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
 7-34
323-357




TYPE 39


PVE6_HPV39
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
 71-102




TYPE 39


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
55-89




TYPE 41


PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
63-97




TYPE 41


PVE6_HPV41
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
119-146




TYPE 41


VL1_HPV41
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
345-372




TYPE 41


VL2_HPV41
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
415-442




TYPE 41


PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
25-59




TYPE 42


PVE6_HPV45
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
 75-102




TYPE 45


PVE1_HPV47
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
146-173




TYPE 47


PVE2_HPV47
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
17-51
148-175
276-303




TYPE 47


PVE2_HPV05
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS
17-51




TYPE 5


PVE4_HPV05
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
202-229




TYPE 5


PVE2_HPV51
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
137-184




TYPE 51


PVE6_HPV51
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
72-99




TYPE 51


VL1_HPV51
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
19-46




TYPE 51


PVE1_HPV57
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
21-48




TYPE 57


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
166-193




TYPE 57


PVE2_HPV58
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
 2-36
309-336




TYPE 58


VL1_HPV58
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
45-72




TYPE 58


PVE2_HPV5B
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS
17-51




TYPE 5B


PVE4_HPV5B
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
202-229




TYPE 5B


PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
11-41




TYPE 5B


PVE5A_HPV6B
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
30-60




TYPE 6B


PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
30-60




TYPE 6C


VL1_HPV08
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
354-392




TYPE 8


PVE6_HPVME
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
 71-102




TYPE ME180


PRRPP_PI1HB
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1
 84-111
234-261
375-416



SUBUNIT
VIRUS (STRAIN C35)


PNCAP_PI1HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1
377-404
455-482




VIRUS (STRAIN C39)


PRRPP_PI1HC
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1
 84-111
234-261
375-416




VIRUS (STRAIN C39)


PVGLF_PI1HC
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 1
147-174
210-266



PRECURSOR
VIRUS (STRAIN C39)


PRRPP_PI1HE
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1
 84-111
244-271
375-416



SUBUNIT
VIRUS (STRAIN CI-14/83)


PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1
41-75




VIRUS (STRAIN CI-14/83)


PRRPP_PI1HD
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 1
 84-111
232-262
375-416



SUBUNIT
VIRUS (STRAIN CI-5/73)


PHEMA_PI1HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 1
 79-110
366-393



NEURAMINIDASE
VIRUS (STRAIN WASHINGTON/




1957)


PNCAP_PI1HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1
377-404
444-488




VIRUS (STRAIN WASHINGTON/




1957)


PRRPP_PI2H
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2
167-194
222-256



SUBUNIT
VIRUS


PVGLF_PI2H
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2
 90-117
141-175
238-266
483-528



PRECURSOR
VIRUS


PVGLF_PI2HG
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2
 90-117
114-175
238-266
483-528



PRECURSOR
VIRUS (STRAIN GREER)


PRRPL_P12HT
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 2
322-349
1564-1598
1687-1721
1901-1946



SUBUNIT
VIRUS (STRAIN TOSHIBA)


PRRPP_PI2HT
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2
167-194
222-256



SUBUNIT
VIRUS (STRAIN TOSHIBA)


PVGLF_PI2HT
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2
 90-117
141-175
238-266
483-528



PRECURSOR
VIRUS (STRAIN TOSHIBA)


PVMAT_PI2HT
MATRIX PROTEIN
HUMAN PARAINFLUENZA 2
 96-123




VIRUS (STRAIN TOSHIBA)


PHEMA_PI3HA
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61



NEURAMINIDASE
VIRUS (STRAIN AUS/124854/74


PNCAP_PI3H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3
376-403




VIRUS (STRAIN NIH)47885


PHEMA_PI3H4
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61



NEURAMINIDASE
VIRUS (STRAIN NIH 47885)


PRRPL_PI3H4
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 3
52-86
136-163
608-638
1081-1123
1994-2036
2115-2142



SUBUNIT
VIRUS (STRAIN NIH 47885)


PRRRP_PI3H4
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 3
114-144
269-299



SUBUNIT
VIRUS (STRAIN NIH 47885)


PVGLF_PI3H4
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 3
115-182
207-241
457-497



PRECURSOR
VIRUS (STRAIN NIH 47885)


PVMAT_PI3HR
MATRIX PROTEIN
HUMAN PARAINFLUENZA 3
201-231




VIRUS (STRAIN NIH 47885)


PVNSC_PI3H4
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 3
58-99




VIRUS (STRAIN NIH 47885)


PHEMA_PI3HV
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61



NEURAMINIDASE
VIRUS (STRAIN TEX/12677/83)


PHEMA_PI3HT
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-76



NEURAMINIDASE
VIRUS (STRAIN TEX/545/80)


PHEMA_PI3HU
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
23-70



NEURAMINIDASE
VIRUS (STRAIN TEX/9305/82)


PHEMA_PI3HX
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61



NEURAMINIDASE
VIRUS (STRAIN WASH/1511/73)


PHEMA_PI3HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3
27-61



NEURAMINIDASE
VIRUS (STRAIN WASH/641/79)


PRRPP_PI4HA
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 4A
 4-38



SUBUNIT
VIRUS (STRAIN TOSHIBA)


PVV_PI4HA
V PROTEIN
HUMAN PARAINFLUENZA 4A
 4-38




VIRUS (STRAIN TOSHIBA)


PRRPP_HRSV
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY
 99-141



SUBUNIT
SYNCYTIAL VIRUS


PNCAP_HRSVA
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY
 4-31




SYNCYTIAL VIRUS (STRAIN A2)


PRRPL_HRSVA
RNA POLYMERASE BETA
HUMAN RESPIRATORY
103-192
210-237
667-694
788-815
1007-1034
1138-1165
1453-1480
1776-1803
2062-2089



SUBUNIT
SYNCYTIAL VIRUS (STRAIN A2)


PRRPP_HRSVA
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY
 99-141



SUBUNIT
SYNCYTIAL VIRUS (STRAIN A2)


PVGLF_HRSVA
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
38-65
154-202
213-243
488-518



PRECURSOR
SYNCYTIAL VIRUS (STRAIN A2)


PVMA2_HRSVA
MATRIX GLYCOPROTEIN M2
HUMAN RESPIRATORY
124-151




SYNCYTIAL VIRUS (STRAIN A2)


PVMAT_HRSVA
MATRIX PROTEIN
HUMAN RESPIRATORY
219-246




SYNCYTIAL VIRUS (STRAIN A2)


PVGLG_HRSV4
MAJOR SURFACE
HUMAN RESPIRATORY
 66-107



GLYCOPROTEIN G
SYNCYTIAL VIRUS (STRAIN




RSB5857)


PVGLG_HRSV5
MAJOR SURFACE
HUMAN RESPIRATORY
243-273



GLYCOPROTEIN G
SYNCYTIAL VIRUS (STRAIN




RSB6190)


PVGLF_HRSVR
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
38-65
154-202
213-243
442-471
488-518



PRECURSOR
VIRUS (STRAIN RSS-2)


PRRPP_HRSVL
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY
 99-141



SUBUNIT
SYNCYTIAL VIRUS (SUBGROUP




A/STRAIN LONG)


PVGLF_HRSVL
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
38-65
154-202
216-243
444-471
488-515



PRECURSOR
SYNYTIAL VIRUS (SUBGROUP




A/STRAIN LONG)


PNCAP_HRSV1
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY
 4-31
 74-108
112-141




SYNCYTIAL VIRUS (SUBGROUP




B/STRAIN 18537)


PRRPP_HRSV1
RNA POLYMERASE ALPHA
HUMAN RESPIRATORY
 99-141



SUBUNIT
SYNCYTIAL VIRUS (SUBGROUP




B/STRAIN 18537)


PVGLF_HRSV1
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
38-65
154-203
442-471
488-515



PRECURSOR
SYNCYTIAL VIRUS (SUBGROUP




B/STRAIN 18537)


PVGLG_HRSV1
MAJOR SURFACE
HUMAN RESPIRATORY
63-93



GLYCOPROTEIN G
SYNCYTIAL VIRUS (SUBGROUP




B/STRAIN 18537)


PVGLG_HRSV8
MAJOR SURFACE
HUMAN RESPIRATORY
66-93



GLYCOPROTEIN G
SYNCYTIAL VIRUS (SUBGROUP




B/STRAIN 8/60)


PENV_HTL1C
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA
342-376




VIRUS TYPE 1 (CARIBBEAN




ISOLATE)


PPOL_HTL1C
POL POLYPROTEIN
HUMAN T-CELL LEUKEIMA
674-712




VIRUS TYPE I (CARIBBEAN




ISOLATE)


PENV_HTLIM
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA
342-376




VIRUS TYPE 1 (ISOLATE MT-2)


PENV_HTL1A
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA
342-376




VIRUS TYPE 1 (STRAIN ATK)


PPOL_HTL1A
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA
674-712




VIRUS TYPE 1 (STRAIN ATK)


PENV_HTLV2
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA
336-370




VIRUS TYPE II


PDPOL_HSVI1
DNA POLYMERASE
ICTALURID HERPES VIRUS 1
328-366
710-737


PKR74_HSVI1
GENE 74 PROTEIN KINASE
ICTALURID HERPES VIRUS 1
491-518


PVG07_HSVI1
HYPOTH GENE 7 MEMB PRO
ICTALURID HERPES VIRUS 1
71-98


PVG17_HSVI1
HYPOTHETICAL GENE 17
ICTALURID HERPES VIRUS 1
177-204



PROTEIN


PVG18_HSVI1
HYPOTHETICAL GENE 18
ICTALURID HERPES VIRUS 1
174-208



PROTEIN


PVG22_HSVI1
HYPOTHETICAL GENE 22
ICTALURID HERPES VIRUS 1
373-400
581-622
668-705
766-824



PROTEIN


PVG24_HSVI1
HYPOTHETICAL GENE 24
ICTALURID HERPES VIRUS 1
31-58



PROTEIN


PVG28_HSVI1
HYPOTHETICAL GENE 28
ICTALURID HERPES VIRUS 1
253-290
497-528



PROTEIN


PVG34_HSVI1
HYPOTHETICAL GENE 34
ICTALURID HERPES VIRUS 1
 95-122



PROTEIN


PVG37_HSVI1
HYPOTHETICAL GENE 37
ICTALURID HERPES VIRUS 1
442-469



PROTEIN


PVG39_HSVI1
HYPOTHETICAL GENE 39
ICTALURID HERPES VIRUS 1
651-678
1088-1115



PROTEIN


PVG46_HSVI1
PROBABLE MAJOR
ICTALURID HERPES VIRUS 1
142-169
346-373
897-924
 973-1007



GLYCOPROTEIN


PVG51_HSVI1
HYPOTH GENE 51
ICTALURID HERPES VIRUS 1
34-61
 87-114



MEMBRANE PROTEIN


PVG56_HSVI1
HYPOTHETICAL GENE 56
ICTALURID HERPES VIRUS 1
582-609



PROTEIN


PVG63_HSVI1
HYPOTHETICAL GENE 63
ICTALURID HERPES VIRUS 1
550-584



PROTEIN


PVG64_HSVI1
HYPOTHETICAL GENE 64
ICTALURID HERPES VIRUS 1
477-504



PROTEIN


PVG65_HSVI1
HYPOTHETICAL GENE 65
ICTALURID HERPES VIRUS 1
1213-1254



PROTEIN


PVG66_HSVI1
HYPOTHETICAL GENE 66
ICTALURID HERPES VIRUS 1
362-406



PROTEIN


PVG67_HSVI1
HYPOTHETICAL GENE 67
ICTALURID HERPES VIRUS 1
1342-1369



PROTEIN


PVG68_HSVI1
HYPOTHETICAL GENE 68
ICTALURID HERPES VIRUS 1
261-288



PROTEIN


PVG72_HSVI1
HYPOTHETICAL GENE 72
ICTALURID HERPES VIRUS 1
447-481



PROTEIN


PVG75_HSVI1
HYPOTHETICAL GENE 75
ICTALURID HERPES VIRUS 1
388-422



PROTEIN


PVG76_HSVI1
HYPOTHETICAL GENE 76
ICTALURID HERPES VIRUS 1
200-227



PROTEIN


PVTER_HSVI1
PROBABLE DNA
ICTALURID HERPES VIRUS 1
710-737



PACKAGING PROTEIN


PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/SWITZERLAND/137/72


PHEMA_IAAIC
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




AICHI/2/68)


PVNS1_IAALA
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
ALASKA/6/7)


PVNUC_IAANA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




ANA ACUTA/PRIMORJE/695/76)


PRRP2_IAANN
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
ANN ARBOR/6/60)


PVNS1_IAANN
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
ANN ARBOR/6/60)


PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




ANN ARBOR/6/60)


PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
24-51
371-437




BANGKOK/1/79)


PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
47-81




BLACK DUCK/AUSTRALIA/




702/78)


PVNUC_IABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




BRAZIL/11/78)


PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




BUDGERIGAR/HOKKAIDO/1/77)


PRRP3_IABUD
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
537-567



SUB P3
BUDGERIGAR/HOKKAIDO/1/77)


PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




BUDGERIGAR/HOKKAIDO/1/77)


PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




CALIFORNIA/10/78)


PNRAM_IACAO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
33-64




CAMEL/MONGOLIA/82


PHEMA_IACAO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN A/
 9-36




CAMEL/MONGOLIA/82)


PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




CHICKEN/ALABAMA/1/75)


PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
31-58
382-441
494-528




CHICKEN/GERMANY/N/49)


PVNS1_IACKG
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
CHICKEN/GERMANY/N/49)


PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




CHICKEN/GERMANY/N/49)


PVNS1_IACKJ
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
168-195



NS1
CHICKEN/JAPAN/24)


PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
396-426




CHICKEN/PENNSYLVANIA/1/83)


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




CHICKEN/PENNSYLVANIA/1/83)


PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
396-426




CHICKEN/PENNSYLVANIA/1370/




83)


PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
119-146
384-443




CHICKEN/VICTORIA/1/85)


PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43
50-91




CHILE/1/83)


PRRP3_IACHI
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
331-358



SUB P3
CHILE/1/83)


PVNS1_IACHI
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
CHILE/1/83)


PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




DUCK/ALBERTA/28/76)


PNRAM_IADA1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
51-81




DUCK/ALBERTA/28/76)


PHEMA_IADA4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
418-478




DUCK/ALBERTA/35/76)


PHEMA_IADA2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
423-453
499-543




DUCK/ALBERTA/60/76)


PVNS1_IADA2
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
DUCK/ALBERTA/60/76)


PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




DUCK/ALBERTA/78/76)


PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/AUSTRALIA/749/80)


PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/BEIJING/1/78)


PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




DUCK/CZECHOSLOVAKIA/56)


PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/CZECHOSLOVAKIA/56)


PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/ENGLAND/1/)


PHEMA_IADE1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55
402-453
506-533




DUCK/ENGLAND/1/56)


PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/ENGLAND/1/62)


PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
21-48




DUCK/GERMANY/49)


PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/10/85)


PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/21/82)


PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/33/80)


PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/5/77)


PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/7/82)


PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/8/80)


PRRP2_IADH2
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
DUCK/HOKKAIDO/8/80)


PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/9/85)


PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/HONG KONG/7/75)


PHEMA_IADIR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
413-445




DUCK/IRELAND/113/83)


PHEMA_IADMA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
31-58




DUCK/MANITOBA/1/53)


PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/MANITOBA/1/53)


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-56




DUCK/MEMPHIS/546/76)


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




DUCK/MEMPHIS/928/74)


PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/MEMPHIS/928/74)


PHEMA_IADNY
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55




DUCK/NEW YORK/12/78)


PHEMA_IADNZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




DUCK/NEW ZEALAND/31/76)


PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/NEW ZEALAND/31/76)


PHEMA_IADU1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55




DUCK/UKRAINE/1/60)


PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




DUCK/UKRAINE/1/63)


PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/UKRAINE/2/60)


PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




ENGLAND/19/55)


PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453




ENGLAND/321/77)


PHEMA_IAEN6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
24-51




ENGLAND/878/69)


PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/ALGIERS/72)


PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/C.DETROIT/1/64)


PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/CAMBRIDGE/1/63)


PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/CAMBRIDGE/1/73)


PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
197-224
386-413




EQUINE/COR/16/74)


PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/DETROIT/1/64)


PHEMA_IAHFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/FONTAINEBLEAU/76)


PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




EQUINE/JILLIN/1/89)


PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
 5-44
46-76
364-400




EQUINE/KENTUCKY/1/81)


PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/KENTUCKY/1/87)


PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/KENTUCKY/2/86)


PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/LEXINGTON/1/66)


PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/LONDON/1416/73)


PRRP2_IAHLO
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
EQUINE/LONDON/1416/73)


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




LONDON/1416/73)


PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/MIAMI/1/63)


PVNUC_IAHMI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




EQUINE/MIAMI/1/63)


PHEMA_IAHNN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/NEW MARKET/1/77)


PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/NEW MARKET/76)


PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/PRAGUE/1/56)


PRRP3_IAHPR
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
331-361
480-507



SUB P3
EQUINE/PRAGUE/1/56)


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




EQUINE/PRAGUE/1/56)


PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/ROMANIA/80)


PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/SANTIAGO/1/85)


PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/SAO PAULO/1/76)


PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/TENNESSEE/5/86)


PRRP2_IAHTE
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
EQUINE/TENNESSEE/5/86)


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




EQUINE/TENNESSEE/5/86)


PHEMA_IAHTO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-455




EQUINE/TOKYO/71)


PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/URUGUAY/1/63)


PVNS1_IAFOM
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
FORT MONMOUTH/1/47)


PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




FORT MONMOUTH/1/47)


PVNS1_IAFOW
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
FORT WARREN/1/50)


PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




FORT WARREN/1/50)


PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




FOWL PLAGUE VIRUS/DOBSON/




‘DUTCH’/27)


PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
177-221
384-442




FOWL PLAGUE VIRUS/




ROSTOCK/34)


PRRP2_IAFPR
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
FOWL PLAGUE VIRUS/



ROSTOCK/34)


PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




FOWL PLAGUE VIRUS/




ROSTOCK/34)


PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
10-48
52-80
197-224




FOWL PLAGUE VIRUS/




WEYBRIDGE)


PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




GREY TEAL/AUSTRALIA/2/79)


PVNUC_IAURE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GREY TEAL/AUSTRALIA/2/79)


PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
504-531




GULL/ASTRAKHAN/227/84)


PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
389-405




GULL/ASTRAKHAN/227/84)


PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MARYLAND/1815/79)


PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MARYLAND/1824/78)


PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MARYLAND/5/77)


PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
505-532




GULL/MARYLAND/704/77)


PRRP2_IAGU2
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
GULL/MARYLAND/704/77)


PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MARYLAND/704/77)


PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MASSACHUSETTS/26/80)


PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MINNESOTA/945/80)


PHEMA_IAHAR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56




HARBIN/1/88)


PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




HICKOX/40)


PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




HONG KONG/1/68)


PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




HONG KONG/5/83)


PHEMA_IAJAP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
196-223




JAPAN/305/57)


PHEMA_IAKIE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
425-478




KIEV/59/79)


PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-81




KIEV/59/79)


PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




KIEV/59/79)


PRRP1_IAKOR
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
575-602



SUB P1
KOREA/426/68)


PRRP2_IAKOR
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
KOREA/426/68)


PRRP2_IALE2
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
LENINGRAD/134/17/57)


PRRP2_IALE1
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
LENINGRAD/134/57)


PVNS1_IALE1
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
LENINGRAD/134/57)


PHEMA_IALEN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
425-478




LENINGRAD/54/1)


PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-81




LENINGRAD/54/1)


PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




LENINGRAD/54/1)


PVNS1_IAMA6
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
MALLARD/ALBERTA/88/76)


PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
380-450




MALLARD/ASTRAKHAN/244/82)


PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




MALLARD/ASTRAKHAN/244/82)


PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
385-455




MALLARD/ASTRAKHAN/263/82)


PRRP2_IAMAN
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
MALLARD/NEW YORK/6750/78)


PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




MALLARD/NEW YORK/6750/78)


PHEMA_IAMAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




MALLARD/NEW YORK/6874/78)


PHEMA_IAME1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453




MEMPHIS/1/71)


PNRMA_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43
50-81




MEMPHIS/1/71H-A/BELLAMY/




42N)


PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453




MEMPHIS/102/72)


PHEMA_IAME6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
24-51
371-437




MEMPHIS/6/86)


PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
31-58
382-441




MINK/SWEDEN/84)


PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




MINK/SWEDEN/84)


PVNUC_IANEJ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




NEW JERSEY/8/76)


PHEMA_IANT6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




NT/60/68)


PRRP2_IANT6
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
NT/60/68)


PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




NT/60/68)


PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




OHIO/4/83)


PNRAM_IAPAR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43
50-81




PARROT/ULSTER/73)


PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




PARROT/ULSTER/73)


PHEMA_IAPIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
505-534




PILOT WHALE/MAINE/328/84


PRRP2_IAP10
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
PINTAIL/ALBERTA/119/79)


PVNS1_IAPI1
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
PINTAIL/ALBERTA/121/79)


PVNS1_IAPI3
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
PINTAIL/ALBERTA/358/79)


PHEMA_IAPUE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
425-478




PUERTO RICO/8/34)


PNRAM_IAPUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43




PUERTO RICO/8/34)


PRRP2_IAPUE
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
PUERTO RICO/8/34)


PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




PUERTO RICO/8/34)


PHEMA_IAQU7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
24-51





QU/7/70)


PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




RUDDY TURNSTONE/NEW




JERSEY/47/85)


PRRP2_IARUD
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
RUDDY TURNSTONE/NEW




JERSEY/47/85)


PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




RUDDY TURNSTONE/NEW




JERSEY/47/85)


PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-88




RUDDY TURNSTONE/NEW




JERSEY/60/85)


PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SEAL/MASSACHUSETTS/1/80)


PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




SEAL/MASSACHUSETTS/133/82)


PHEMA_IASH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
28-56
160-187
506-547




SHEARWATER/AUSTRALIA/72)


PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SHEARWATER/AUSTRALIA/72)


PRRP2_IASIN
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
SINGAPORE/1/57)


PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378/405




SINGAPORE/1/57)


PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
119-146
384-443




STARLING/VICTORIA/5156/85)


PVNUC_IAZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/29/37)


PVNUC_IAZ41
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/41/49)


PVNUC_IAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/CAMBRIDGE/1/35)


PHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453




SWINE/COLORADO/1/77)


PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/DANDONG/9/83)


PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/GERMANY/2/81)


PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




SWINE/HONG KONG/126/82)


PRRP2_IAZH3
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
SWINE/HONG KONG/126/82)


PVNUC_IAZH3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/HONG KONG/126/82)


PVNUC_IAZH4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/HONG KONG/127/82)


PVNUC_IAZH1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/HONG KONG/6/76)


PHEMA_IAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




SWINE/HONG KONG/81/78)


PRRP2_IAZH2
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
SWINE/HONG KONG/81/78)


PHEMA_IAZIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
418-478
506-547




SWINE/INDIANA/1726/88)


PRRP2_IAZI1
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
SWINE/IOWA/15/30)


PVNUC_IAZI1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/IOWA/15/30)


PVNUC_IAZI2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/IOWA/1976/31)


PVNUC_IAZI3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/IOWA/46)


PVNUC_IAZJ3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/ITALY/141/81)


PVNUC_IAZJ2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/ITALY/2/79)


PVNUC_IAZJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/ITALY/437/76)


PVNUC_IAZJ4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/ITALY/839/89)


PVNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/JAMESBURG/42)


PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/MAY/54)


PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/NETHERLANDS/12/85)


PHEMA_IAZNJ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
418-478
506-547




SWINE/NEW JERSEY/11/76)


PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/OHIO/23/35)


PVNUC_IAZON
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/ONTARIO/2/81)


PRRP3_IAZTE
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
487-514



SUB P3
SWINE/TENNESSEE/24/77)


PVNUC_IAZTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




WINE/TENNESSEE/24/77)


PRRP2_IAZTF
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
SWINE/TENNESSEE/26/77)


PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




SWINE/UKKEL/1/84)


PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/WISCONSIN/1/57)


PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/WISCONSIN/1/61)


PHEMA_IATAI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
25-56




TAIWAN/1/86)


PVNUC_IATEI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




TEAL/ICELAND/29/80)


PHEMA_IATRA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55




TERN/AUSTRALIA/G70C/75)


PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-82




TERN/AUSTRALIA/G70C/75)


PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




TERN/SOUTH AFRICA/61)


PVNS1_IATRT
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
TERN/TURKMENIA/18/72)


PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




TERN/TURKMENIA/18/72)


PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




TEXAS/1/77)


PVNS1_IATKB
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
TURKEY/BETHLEHEM-GLILIT/




1492-B/82)


PVNS1_IATKC
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
TURKEY/CANADA/63)


PHEMA_IATKI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
415-445




TURKEY/IRELAND/1378/83)


PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




TURKEY/MINNESOTA/1661/81)


PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




TURKEY/MINNESOTA/833/80)


PRRP2_IATKM
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
TURKEY/MINNESOTA/833/80)


PHEMA_IATKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
424-454
493-539




TURKEY/ONTARIO/6118/68)


PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
507-534




TURKEY/ONTARIO/7732/66)


PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




TURKEY/ONTARIO/7732/66)


PHEMA_IATKR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
32-62
194-221
381-422




TURKEY/OREGON/71)


PVNS2_IATKR
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
87-114



NS2
TURKEY/OREGON/71)


PHEMA_IATKW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
419-449
500-536




TURKEY/WISCONSIN/1/66)


PHEMA_IAUDO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
40-67
387-453




UDORN/307/72)


PVNS1_IAUDO
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-198



NS1
UDORN/307/72)


PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




UDORN/307/72)


PHEMA_IAUSS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
425-478




USSR/90/77)


PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
50-81




A/USSR/90/77)


PVNS1_IAUSS
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS (STRAIN A/
171-98



NS1
USSR/90/77)


PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




USSR/90/77)


PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
41-68
388-454




VICTORIA/3/75)


PRRP2_IAVI7
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146
327-354



SUB P2
VICTORIA/3/75)


PVNUC_IAVI6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




VICTORIA/5/68)


PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-88




WHALE/MAINE/1/84)


PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




WHALE/MAINE/328/84)


PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




WHALE/PACIFIC OCEAN/19/76)


PHEMA_IAWIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
424-477




WILSON-SMITH/33)


PNRAM_IAWIL
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43




WILSON-SMITH/33)


PRRP2_IAWIL
RNA-DIRECTED RNA POL
INFLUENZA A VIRUS (STRAIN A/
119-146



SUB P2
WILSON-SMITH/33)


PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




WILSON-SMITH/33)


PVNUC_IAWIS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




WISCONSIN/3523/88)


PHEMA_IAXIA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56




XIANFENG/3/89)


PPRP2_INBAC
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
157-194



SUB P2
ANN ARBOR/1/66




[COLD-ADAPTED])


PRRP3_INBAC
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
2-33
472-509



SUB P3
ANN ARBOR/1/66




[COLD-ADAPTED])


PRRP2_INBAD
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
164-194



SUB P2
ANN ARBOR/1/66 [WILD-TYPE]


PRRP3_INBAD
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
2-33
472-509



SUB P3
ANN ARBOR/1/66 [WILD-TYPE]


PHEMA_INBBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
400-431
439-483




BEIJING/1/87)


PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
390-421
429-473




BONN/43)


PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
398-429
437-481




ENGLAND/222/82)


PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
391-418
429-473




HONG KONG/8/73)


PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
399-430
438-482




LEE/40)


PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/
4-35




LEE/40)


PVNS2_INBLE
NONSTRUCTURAL PROTEIN
INFLUENZA B VIRUS (STRAIN B/
51-78



NS2
LEE/40)


PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
389-420
428-472




MARYLAND/59)


PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
393-424
432-476




MEMPHIS/6/86)


PHGEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
398-429
437-481




OREGON/5/80)


PVNS1_INBPA
NONSTRUCTURAL PROTEIN
INFLUENZA B VIRUS (STRAIN B/
171-198



NS1
PA/79)


PHEMA_INBSI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
398-429
437-481




SINGAPORE/222/79)


PRRP2_INBSI
RNA-DIRECTED RNA POL
INFLUENZA B VIRUS (STRAIN B/
157-194



SUB P2
SINGAPORE/222/79)


PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
391-422
430-474




USSR/100/83)


PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
400-431
439-483




VICTORIA/2/87)


PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/
393-4224
432-476




VICTORIA/3/85)


PVNS2_INBYA
NONSTRUCTURAL PROTEIN
INFLUENZA B VIRUS (STRAIN B/
51-78



NS2
YAMAGATA/1/73)


PRRP3_INCBE
RNA-DIRECTED RNA POL
INFLUENZA C VIRUS (STRAIN C/
509-536



SUB P3
BERLIN/1/85)


PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
495-571




CALIFORNIA/78)


PVNUC_INCAA
NUCLEOPROTEIN
INFLUENZA C VIRUS (STRAIN C/
 99-126
416-443
451-478




CALIFORNIA/78)


PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559




ENGLAND/892/83)


PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559




GREAT LAKES/1167/54)


PHEMA_INCHY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
482-558




HYOGO/1/83)


PRRP3_INCJJ
RNA-DIRECTED RNA POL
INFLUENZA C VIRUS (STRAIN C/
509-536



SUB P3
JJ/50)


PVMAT_INCJJ
MATRIX (M) PROTEIN
INFLUENZA C VIRUS (STRAIN C/
151-185




JJ/50)


PVNS2_INCJJ
NONSTRUCTURAL PROTEIN
INFLUENZA C VIRUS (STRAIN C/
71-98



NS2
JJ/50)


PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
496-572




JOHANNESBURG/1/66)


PHEMA_INCKY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
482-558




KYOTO/41/82)


PHEMA_INCMI
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
482-558




MISSISSIPPI/80)


PHEMA_INCNA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
482-558




NARA/82)


PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559




PIG/BEIJING/10/81)


PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559




PIG/BEIJING/115/81)


PHEMA_INCP3
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559




PIG/BEIJING/439/82)


PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559




TAYLOR/1233/47)


PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559




YAMAGATA/10/81)


PENV_MLVKI
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA
40-81




VIRUS


PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
MAREK'S DISEASE HERPES
 93-120
352-379




VIRUS (STRAIN RB-1B)


PENV_MCFF
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING
473-512




MURINE LEUKEMIA VIRUS


PENV_MCFF3
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING
488-515




MURINE LEUKEMIA VIRUS




(ISOLATE CI-3)


PENV_MLVMO
ENV POLYPROTEIN
MOLONEY MURINE LEUKEMIA
502-543




VIRUS


PDNBI_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS
584-618




(STRAIN SMITH)


PIC18_MCMVS
PROB PROC & TRANSPORT PRO
MURINE CYTOMEGALOVIRUS
661-691




(STRAIN SMITH)


PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS
381-408
441-475




(STRAIN SMITH)


VIE1_MCMVS
IMMEDIATE-EARLY PROTEIN 1
MURINE CYTOMEGALOVIRUS
261-288




(STRAIN SMITH)


PVE2_PCPV1
E2 PROTEIN
PYGMY CHIMPANZEE
267-294
327-361




PAPILLOMA VIRUS TYPE 1


PVE5_PCPV1
PROBABLE E5 PROTEIN
PYGMY CHIMPANZEE
35-62




PAPILLOMA VIRUS TYPE 1


PENV_MLVRD
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA
497-538




VIRUS


PPOL_MLVRD
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA
716-743
805-832




VIRUS


PENV_MLVRK
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA
497-538




VIRUS (STRAIN KAPLAN)


PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA
101-128
190-217




VIRUS (STRAIN KAPLAN)


PDNBI_SCMBC
MAJOR DNA-BINDING PROTEIN
CIMIAN CYTOMEGALOVIRUS
435-462
532-559




(STRAIN COLBURN)


PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
207-241
1025-1052
1115-1192




(STRAIN AGM-27)


PPOLG_HPAVT
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
203-237




(STRAIN CY-145)


PENV_SIVA1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
269-310
561-588
592-619
652-679
697-724




VIRUS (AGM155 ISOLATE)


PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
431-458
547-574
637-671




VIRUS (AGM155 ISOLATE)


PPOL_SIVA2
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
45-72




VIRUS (AGM266 ISOLATE)


PENV_SIVAG
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
270-301
566-593
597-624
658-685
703-730




VIRUS (AGM3 ISOLATE)


PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
436-463
482-516
642-669




VIRUS (AGM3 ISOLATE)


PPOL_SIVA3
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
71-98




VIRUS (AGM385 ISOLATE)


PENV_SIVS4
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
281-308
553-612
642-669
691-718




VIRUS (F236/SMH4 ISOLATE)


PGAG_SIVS4
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
 88-115




VIRUS (F236/SMH4 ISOLATE)


PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
496-523




VIRUS (F236/SMH4 ISOLATE)


PENV_SIVAI
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
257-291
336-372
548-603
634-708




VIRUS (ISOLATE AGM/CLONE




GRI-1)


PGAG_SIVAI
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
473-507




VIRUS (ISOLATE AGM/CLONE




GRI-1)


PNEF_SIVAI
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY
 96-137




VIRUS (ISOLATE AGM/CLONE




GRI-1)


PPOL_SIVAI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
478-515




VIRUS (ISOLATE AGM/CLONE




GRI-1)


VIF_SIVAI
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY
 2-36




VIRUS (ISOLATE AGM/CLONE




GRI-1)


PENV_SIVGB
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
 8-35
158-185
589-650
784-816




VIRUS (ISOLATE GB1)


PPOL_SIVGB
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
222-254
636-670




VIRUS (ISOLATE GB1)


PENV_SIVMK
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
553-608




VIRUS (K6W ISOLATE)


PGAG_SIVMK
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
 88-115




VIRUS (K6W ISOLATE)


PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
533-560




VIRUS (K6W ISOLATE)


PENV_SIVML
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
549-608




VIRUS (K78 ISOLATE)


PENV_SIVM1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
120-150
550-609
671-715




VIRUS (MM142-83 ISOLATE)


PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
553-560




VIRUS (MM142-83 ISOLATE)


PENV_SIVM2
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
156-215
277-289




VIRUS (MM251 ISOLATE)


PENV_SIVSP
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
286-313
554-595
646-722




VIRUS (PBJ/BC13 ISOLATE)


PGAG_SIVSP
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
 88-115




VIRUS (PBJ/BC13 ISOLATE)


PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
499-526




VIRUS (PBJ/BC13 ISOLATE)


PGAG_SIVMS
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
 88-115




VIRUS (STM ISOLATE)


PENV_SIVAT
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
 3-30
268-298
590-617
651-678




VIRUS (TYO-1 ISOLATE)


PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
657-691




VIRUS (TYO-1 ISOLATE)


PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY
41-68




VIRUS (TYO-1 ISOLATE)


PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
422-470


PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
574-612
670-697


PGAG_MPMV
GAG POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
222-260




(MPMV)


PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS
109-139




(STRAIN DUMAS)


PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS
490-517
701-728




(STRAIN DUMAS)


PRIR1_VZVD
RIBONUC-DIPHOSPH
VARICELLA-ZOSTER VIRUS
119-146



REDUCT LARGE CHA
(STRAIN DUMAS)


PTEGU_VZVD
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS
1121-1158
1579-1609




(STRAIN DUMAS)


PUL14_VZVD
HYPOTHETICAL GENE 46
VARICELLA-ZOSTER VIRUS
 64-101



PROTEIN
(STRAIN DUMAS)


PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS
380-407




(STRAIN DUMAS)


PUL34_VZVD
VIRION GENE 24 PROTEIN
VARICELLA-ZOSTER VIRUS
112-139




(STRAIN DUMAS)


PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS
107-134
485-512
719-746
 976-1003




(STRAIN DUMAS)


PUL41_VZVD
HOST SHUTOFF VIRION
VARICELLA-ZOSTER VIRUS
330-364



PROTEIN
(STRAIN DUMAS)


PUL43_VZVD
GENE 15 MEMBRANE
VARICELLA-ZOSTER VIRUS
129-156
312-349



PROTEIN
(STRAIN DUMAS)


PUL52_VZVD
PROB DNA REP GENE 6
VARICELLA-ZOSTER VIRUS
301-337



PROTEIN
(STRAIN DUMAS)


PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS
295-322




(STRAIN DUMAS)


PVP40_VZVD
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS
174-208
495-522




(STRAIN DUMAS)


PVTER_VZVD
PROBABLE DNA PACKAGING
VARICELLA-ZOSTER VIRUS
394-421



PROTEIN
(STRAIN DUMAS)


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS
295-322




(STRAIN SCOTT)


PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS
285-326




VIRUS 1


PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS
290-331




VIRUS 59


PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS
212-242
290-331




VIRUS 7


PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS
211-241
289-330




VIRUS 8


PDPOL_WHV8I
DNA POLYMERASE
WOODCHUCK HEPATITIS
212-242
290-331




VIRUS 8
















TABLE VIII







107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY


FOR ALL PROCARYOTIC PROTEINS


















PCGENE
107 × 178 × 4
Prokaryotic Sequences











FILE NAME
PROTEIN
ORGANISM
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9





P120K_RICRI
120 KD SURFACE-EXPOSED

RICKETTSIA RICKETTSII

 83-110
 240-298
 355-382
 638-672
 746-838
1168-1202






PROTEIN


P17K_RICTY
17 KD ANTIGEN PRECURSOR

RICKETTSIA TYPHI

 67-94


P190K_RICRI
190 KD ANTIGEN PRECURSOR

RICKETTSIA RICKETTSII

 241-268
 460-487
 607-634
 754-781
 829-856
 904-931
1220-1254
1544-1571
1723-1750



(CELL SURFACE)

2065-2096
2131-2168


P22KD_DESMO
22.6 KD PROTEIN

DESULFUROCOCCUS MOBILIS

 25-52
 59-89
 120-147


P40KD_VIBAN
40 KD PROTEIN PRECURSOR

VIBRIO ANGUILLARUM

 153-196


P60IM_ECOLI
60 KD INNER-MEMBRANE

ESCHERICHIA COLI

 511-538



PROTEIN


P60IM_PROMI
60 KD INNER-MEMBRANE

PROTEUS MIRABILIS

 14-41



PROTEIN


P65KD_ZYMMO
65 KD PROTEIN

ZYMOMONAS MOBILIS

 95-122
 444-524


P6PGD_BACSU
PROB 6-PHOSPHOGLUCONATE

BACILLUS SUBTILIS

 24-51
 218-246



DEHYDROGENASE


P6PGD_ECOLI
6-PHOSPHOGLUCONATE

ESCHERICHIA COLI

 205-232



DEHYDROGENASE


P6PGD_SALTY
6-PHOSPHOGLUCONATE

SALMONELLA TYPHIMURIUM

 205-232



DEHYDROGENASE


PAACA_STAAU
6′-AMINOGLYCOSIDE

STAPHYLOCOCCUS AUREUS

 450-477



N-ACETYLTRANSFERASE


PAAT_BACSP
ASPARTATE AMINOTRANS-

BACILLUS SP
 146-173
 185-212



FERASE


PAAT_ECOLI
ASPARTATE AMINOTRANS-

ESCHERICHIA COLI

 351-378



FERASE


PABC_ECOLI
ABC PROTEIN

ESCHERICHIA COLI

 176-203


PABIC_LACLA
ABORTIVE PHAGE RESIS-

LACTOCOCCUS LACTIS

 85-126
 170-204
 209-273



TANCE PROTEIN ABIC


PACCR_AGRTU
TRANSCRIPTIONAL

AGROBACTERIUM TUMEFACIENS

 127-154



REPRESSOR ACCR


PACEA_ECOLI
ISOCITRATE LYASE

ESCHERICHIA COLI

 398-432


PACON_BACSU
ACONITATE HYDRATASE

BACILLUS SUBTILIS

 48-75


PACON_ECOLI
ACONITATE HYDRATASE

ESCHERICHIA COLI

 41-68
 613-640


PACOR_ALCEU
ACETOIN CATABOLISM REG

ALCALIGENES EUTROPHUS

 85-112



PRO


PACP_ECOLI
ACYL CARRIER PROTEIN

ESCHERICHIA COLI

  4-31


PACRA_ECOLI
ACRIFLAVIN RESISTANCE

ESCHERICHIA COLI

 213-247



PROTEIN A PRECURSOR


PACRB_ECOLI
ACRIFLAVIN RESISTANCE

ESCHERICHIA COLI

 520-551



PROTEIN B


PACRF_ECOLI
ACRIFLAVIN RESISTANCE

ESCHERICHIA COLI

 512-550
 726-753



PROTEIN F


PACT3_STRCO
PUTATIVE KETOACYL

STREPTOMYCES COELICOLOR

 157-184



REDUCTASE


PACTA_LISMO
ACTIN-ASSEMBLY INDUCING

LISTERIA MONOCYTOGENES

 237-264
 576-603



PROTEIN PRECURSOR


PACVS_NOCLA
ACV SYNTHETASE

NOCARDIA LACTAMDURANS

3129-3163


PADAA_BACSU
METPHOSTRIESTER-DNA

BACILLUS SUBTILIS

 136-170



ALKYLTRANSFERASE


PADDA_BACSU
ATP-DEPENDENT NUCLEASE

BACILLUS SUBTILIS

 398-425
 454-481
 522-556
1005-1032



SUBUNIT A


PADDB_BACSU
ATP-DEPENDENT NUCLEASE

BACILLUS SUBTILIS

 257-284
 870-903
 943-977



SUBUNIT B


PADHI_CLOAB
NADPH-DEPENDENT

CLOSTRIDIUM ACETOBUTYLICUM

 284-311



BUTANOL DEHYDROGENASE


PADHA_CLOAB
NADH-DEPENDENT BUTANOL

CLOSTRIDIUM ACETOBUTYLICUM

 298-325



DEHYDROGENASE A


PADHB_CLOAB
NADH-DEPENDENT BUTANOL

CLOSTRIDIUM ACETOBUTYLICUM

 298-325



DEHYDROGENASE B


PADHE_CLOAB
ALCOHOL DEHYDROGENASE

CLOSTRIDIUM ACETOBUTYLICUM

 653-680
 779-806


PADHE_ECOLI
ALCOHOL DEHYDROGENASE

ESCHERICHIA COLI

 271-298


PADIY_ECOLI
PUTATIVE REGULATORY

ESCHERICHIA COLI

 45-72



PROTEIN ADIY


PADP1_MYCGE
140 KD ADHESION

MYCOPLASMA GENITALIUM

 90-131
 697-724
 923-950
 990-1017
1169-1199
1387-1414



PRECURSOR


PADP1_MYCPN
ADHESION P1 PRECURSOR

MYCOPLASMA PNEUMONIAE

1557-1584


PADT_RICPR
ADP, ATP CARRIER PROTEIN

RICKETTSIA PROWAZEKII

 276-307


PAERA_AERHY
AEROLYSIN PRECURSOR

AEROMONAS HYDROPHILA

 278-305


PAGAL_STRMU
ALPHA-GALACTOSIDASE

STREPTOCOCCUS MUTANS

 419-483
 597-633


PAGAR_PSEAT
BETA-AGARASE PRECURSOR

PSEUDOMONAS ATLANTICA

 26-53


PAGR_STAAU
ACCESSORY GENE

STAPHYLOCOCCUS AUREUS

 129-159
 165-192



REGULATOR PROTEIN


PAIL_YEREN
ATTACH INVAS LOCUS

YERSINIA ENTEROCOLITICA

 19-46



PROTEIN PRECURSOR


PAK1H_ECOLI
ASPARTOKINASE I

ESCHERICHIA COLI

  3-30
 466-493
 503-530


PAK2H_ECOLI
ASPARTOKINASE II

ESCHERICHIA COLI

 51-78
 608-635


PAK2_BACSU
ASPARTATE KINASE II ALPHA

BACILLUS SUBTILIS

 266-312



AND BETA SUBUNITS


PAKAB_CORGL
ASPARTATE KINASE ALPHA

CORYNEBACTERIUM GLUTMICUM

  5-32



AND BETA SUBUNITS


PALF_ECOLI
FRUCTOSE-BISPHOSPHATE

ESCHERICHIA COLI

 286-316



ALDOLASE


PALGB_PSEAE
ALGINATE BIOSYN TRANSL

PSEUDOMONAS AERUGINOSA

 160-194



REG PROTEIN ALBG


PALGE_PSEAE
ALGINATE PRODUCTION

PSEUDOMONAS AERUGINOSA

 349-376



PROTEIN ALGE PRECURSO


PALGP_PSEAE
TRANSCRIPTIONAL REGULA-

PSEUDOMONAS AERUGINOSA

 81-115



TORY PROTEIN ALGP


PALKB_PSEOL
ALKANE-1 MONOOXYGENASE

PSEDOMONAS OLEOVORANS

 115-142


PALKT_PSEOL
RUBREDOXIN-NAD(+)

PSEUDOMONAS OLEOVORANS

 138-172
 338-365



REDUCTASE


PALR2_ECOLI
ALANINE RACEMASE,

ESCHERICHIA COLI

  9-36



CATABOLIC PRECURSOR


PALR_BACST
ALANINE RACEMASE

BACILLUS STEAROTHERMOPHILUS

 326-353


PALSR_BACSU
ALS OPERON REGULATORY

BACILLUS SUBTILIS

 119-146



PROTEIN


PALYS_BACSP
AUTOLYSIN PRECURSOR

BACILLUS SP
 157-187


PALYS_BACSU
AUTOLYSIN PRECURSOR

BACILLUS SUBTILIS

 147-191


PALYS_STAAU
AUTOLYSIN

STAPHYLOCOCCUS AUREUS

 244-271


PAMIA_STRPN
AMIA PROTEIN PRECURSOR

STREPTOCOCCUS PNEUMONIAE

 223-264
 297-338
 446-473


PAMID_PSECL
AMIDASE

PSEUDOMONAS CHLORORAPHIS

 72-99


PAMIE_STRPN
OLIGOPEPTIDE TRANSPORT

STREPTOCOCCUS PNEUMONIAE

 187-214



PROTEIN AMIE


PAMPA_ECOLI
AMINOPEPTIDASE A/I

ESCHERICHIA COLI

 111-138
 199-226


PAMPC_SERMA
BETA-LACTAMASE

SERRATIA MERCESCENS

 231-258



PRECURSOR


PAMPL_RICPR
CYTOSOL AMINOPEPTIDASE

RICKETTSIA PROWAZEKII

  3-47
 72-99


PAMPN_ECOLI
AMINOPEPTIDASE N

ESCHERICHIA COLI

 655-682


PAMPP_ECOLI
X-PRO AMINOPEPTIDASE

ESCHERICHIA COLI

 110-137


PAMPT_THEAQ
AMINOPEPTIDASE T

THERMUS AQUATICUS

 281-308


PAMY1_DICTH
ALPHA-AMYLASE 1

DICTYOGLOMUS THERMOPHILUM

 507-534


PAMY2_DICTH
ALPHA-AMYLASE 2

DICTYOGLOMUS THERMOPHILUM

 151-178
 507-534


PAMY2_SALTY
CYTOPLASMIC ALPHA-

SALMONELLA TYPHIMURIUM

 70-104



AMYLASE


PAMY3_DICTH
ALPHA-AMYLASE 3

DICTYOGLOMUS THERMOPHILUM

 280-307


PAMYB_BACCI
BETA-AMYLASE PRECURSOR

BACILLUS CIRCULANS

 61-88


PAMYB_BACPO
BETA-AMYLASE

BACILLUS POLYMYXA

 60-87
 266-293
1143-1184


PAMYB_CLOTU
BETA-AMYLASE, THERMO-

CLOSTRIDIUM THERMO-
 269-296
 378-405
 459-486



PHILIC PRECURSOR

SULFUROGENES



PAMYG_CLOSP
GLUCOAMYLASE PRECURSOR

CLOSTRIDIUM SP
 103-148
 480-510


PAMYM_BACST
MALTOGENIC ALPHA-

BACILLUS STEAROTHERMOPHILUS

 426-453



AMYLASE PRECURSOR


PAMYR_BACS8
RAW-STARCH-DIGESTING

BACILLUS SP
 210-237
 435-465
 615-642



AMYLASE


PAMY_AERHY
ALPHA-AMYLASE

AEROMONAS HYDROPHILA

 415-453



PRECURSOR


PAMY_ALTHA
ALPHA-AMYLASE

ALTEROMONAS HALOPLANKTIS

 166-193



PRECURSOR


PAMY_BACAM
ALPHA-AMYLASE

BACILLUS AMYLOLIQUE-
 102-136



PRECURSOR

FACIENS



PAMY_BACCI
ALPHA-AMYLASE

BACILLUS CIRCULANS

 212-239
 437-474



PRECURSOR


PAMY_BACME
ALPHA-AMYLASE

BACILLUS MEGATERIUM

 61-88
 441-482



PRECURSOR


PAMY_BACSU
ALPHA-AMYLASE

BACILLUS SUBTILIS

 165-205
 281-308



PRECURSOR


PAMY_BUTFI
ALPHA-AMYLASE

BUTYRIVIBRIO FIBRISOLVENS

 377-418
 546-573
 579-606
 795-822



PRECURSOR


PAMY_CLOAB
PUTATIVE ALPHA-AMYLASE

CLOSTRIDIUM ACETOBUTYLICUM

 283-310


PAMY_CLOTU
ALPHA-AMYLASE

CLOSTRIDUM THERMO-
 431-468
 612-642



PRECURSOR

SULFUROGENES



PAMY_STRLM
ALPHA-AMYLASE

STREPTOMYCES LIMOSUS

 173-200



PRECURSOR


PANFA_AZOVI
NITROGEN FIXATION

AZOTOBACTER VINELANDII

 232-259



PROTEIN ANFA


PANFD_AZOVI
NITROGENASE IRON-IRON

AZOTOBACTER VINELANDII

 95-122



PROTEIN ALPHA CHAIN


PANFK_AZOVI
NITROGENASE IRON-IRON

AZOTOBACTER VINELANDII

 369-396



PROTEIN BETA CHAIN


PANGR_VIBAN
ANGR PROTEIN

VIBRIO ANGUILLARIUM

 93-120
 169-203


PAPCE_FREDI
PHYCOBILISOME 120 KD

FREMYELLA DIPLOSIPHON

 51-78



LINKER POLYPEPTIDE


PAPCE_SYNP6
PHYCOBILISOME LINKER

SYNECHOCOCCUS SP
 37-64
 585-615



POLYPEPTIDE


PAPCE_SYNY4
PHYCOBILISOME 120 KD

SYNECHOCYSTIS SP
 52-79



LINKER POLYPEPTIDE


PAPHC_SALTY
ALKYL HYDROPEROXIDE

SALMONELLA TYPHIMURIUM

 62-89



REDUCTASE C22 PROTEIN


PAPI_ACHLY
PROTEASE I PRECURSOR

ACHROMOBACTER LYTICUS

 478-505


PAPPC_ECOLI
PROBABLE CYTOCHROME

ESCHERICHIA COLI

 118-148



OXIDASE SUBUNIT I


PAPRD_PSEAE
ALKALINE PROTEASE SECRE-

PSEUDOMONAS AERUGINOSA

 416-450



TION PROTEIN APRD


PAPRE_PSEAE
ALKALINE PROTEASE SECRE-

PSEUDOMONAS AERUGINOSA

 133-193
 208-235
 247-277



TION PROTEIN APRE


PAPT_ECOLI
ADENINE PHOSPHORIBOSYL-

ESCHERICHIA COLI

 121-148



TRANSFERASE


PAPU_THEET
ALPHA-AMYLASE-

THERMOANAEROBACTER

 276-303
 347-374
 936-982
 987-1014
1210-1254
1381-1408



PULLULANASE PRECURSOR

ETHANOLICUS



PARCA_MYCAR
ARGININE DEIMINASE

MYCOPLASMA ARGININI

 60-87
 218-245


PARCB_ECOLI
AEROBIC RESPIRATION

ESCHERICHIA COLI

 102-150
 302-329
 399-426



CONTROL PROTEIN ARCB


PARCD_PSEAE
PROBABLE ARGININE/

PSEUDOMONAS AERUGINOSA

 274-301
 386-420



ORNITHINE ANTIPORTER


PARGA_ECOLI
AMINO-ACID ACETYL-

ESCHERICHIA COLI

 82-109



TRANSFERASE


PARGT_ECOLI
LYS-ARG-ORN-BINDING

ESCHERICHIA COLI

 84-111



PROTEIN (LAO) PRECURSO


PAROA_STAAU
PHOSPHOSHIKIMATE 1-

STAPHYLOCOCCUS AUREUS

 86-120



CARBOXYVINYLTRANSFER


PAROC_ECOLI
CHORISMATE SYNTHASE

ESCHERICHIA COLI

 68-95


PAROC_SALTI
CHORISMATE SYNTHASE

SALMONELLA TYPHI

 68-95


PAROD_BACSU
DEHYDROQUINATE

BACILLUS SUBTILIS

 49-76



DEHYDRATASE


PAROK_ECOLI
SHIKIMATE KINASE I

ESCHERICHIA COLI

 84-118


PARP4_STRPY
IGA RECEPTOR PRECURSOR

STREPTOCOCCUS PYOGENES

 12-46
 127-157
 266-324


PARP_ECOLI
ARP PROTEIN

ESCHERICHIA COLI

 255-282


PARSA_ECOLI
ARSENICAL PUMP-DRIVING

ESCHERICHIA COLI

 201-238



ATPASE


PARSB_ECOLI
ARSENICAL PUMP

ESCHERICHIA COLI

 291-318



MEMBRANE PROTEIN


PARSB_STAAU
ARSENICAL PUMP

STAPHYLOCOCCUS AUREUS

 27-71
 295-322



MEMBRANE PROTEIN


PARSB_STAXY
ARSENICAL PUMP

STAPHYLOCOCCUS XYLOSUS

 27-71
 295-322



MEMBRANE PROTEIN


PARSR_STAAU
ARSENICAL RESIST OPERON

STAPHYLOCOCCUS AUREUS

 56-93



REPRESSOR PROTEIN


PARTA_ECOLI
ARTA PROTEIN

ESCHERICHIA COLI

  3-30


PARTI_ECOLI
TRANSPORT SYSTEM

ESCHERICHIA COLI

 105-132
 213-240



PROTEIN ARTI


PARTP_ECOLI
TRANSPORT SYSTEM

ESCHERICHIA COLI

 176-206



PROTEIN ARTP


PASA1_ENTFA
AGGREGATION SUBSTANCE

ENTEROCOCCUS FAECALIS

 195-254
 478-505
 799-826
 859-896



PRECURSOR


PASNA_ECOLI
ASPARTATE-AMMONIA

ESCHERICHIA COLI

 127-158



LIGASE


PASNB_ECOLI
ASPARAGINE SYNTHETASE B

ESCHERICHIA COLI

 450-477


PASNC_ECOLI
REGULATORY PROTEIN ASNC

ESCHERICHIA COLI

 116-143


PASPA_BACSU
ASPARTATE AMMONIA-

BACILLUS SUBTILIS

  7-34



LYASE


PASPA_ECOLI
ASPARTATE AMMONIA-

ESCHERICHIA COLI

 204-236



LYASE


PASPA_SERMA
ASPARTATE AMMONIA-

SERRATIA MARCESCENS

 204-231



LYASE


PASPG_BACLI
L-ASPARAGINASE

BACILLUS LICHENIFORMIS

 252-288


PASPG_ERWCH
L-ASPARAGINASE

ERWINIA CHRYSANTHEMI

 188-218



PRECURSOR


PASPQ_ACIGL
GLUTAMINASE-

ACINETOBACTER GLUTA-
 46-80



ASPARAGINASE

MINASIFICANS



PASSY_ECOLI
ARGININOSUCCINATE

ESCHERICHIA COLI

 354-381



SYNTHASE


PASSY_METBA
ARGININOSUCCINATE

METHANOSARCINA BARKERI

 287-314



SYNTHASE


PATBP_STAAU
POTENTIAL ATP-BINDING

STAPHYLOCOCCUS AUREUS

 41-68
 201-245



PROTEIN


PATKA_ENTFA
POTASSIUM/COOPER-

ENTEROCOCCUS FAECALIS

 41-80
 347-374



TRANSPORTING ATPASE A


PATKB_ENTFA
POTASSIUM/COOPER-

ENTEROCOCCUS FAECALIS

 280-310
 450-477



TRANSPORTING ATAPSE B


PATMB_SALTY
MG (2+) TRANSPORT ATPASE,

SALMONELLA TYPHIMURIUM

 503-530



P-TYPE


PATP6_SYNP6
ATP SYNTHASE A CHAIN

SYNECHOCOCCUS SP
 233-260


PATP6_VIBAL
ATP SYNTHASE A CHAIN

VIBRIO ALGINOLYTICUS

 11-38


PATPA_ANASP
ATP SYNTHASE ALPHA

ANABAENA SP
  9-36
 96-130



CHAIN


PATPA_BACME
ATP SYNTHASE ALPHA

BACILLUS MEGATERIUM

  4-36
 453-480



CHAIN


PATPA_ECOLI
ATP SYNTHASE ALPHA

ESCHERICHIA COLI

 486-513



CHAIN


PATPA_ENTFA
ATP SYNTHASE ALPHA

ENTEROCOCCUS FAECALIS

  4-36
 484-518



CHAIN


PATPA_MYCGA
ATP SYNTHASE ALPHA

MYCOPLASMA GALLISEPTICUM

 362-409



CHAIN


PATPA_PROMO
ATP SYNTHASE ALPHA

PROPIONIGENIUM MODESTUM

  6-36



CHAIN


PATPA_RHORU
ATP SYNTHASE ALPHA

RHODOSPIRILLUM RUBRUM

 165-200
 459-486



CHAIN


PATPA_SULAC
ATPASE ALPHA CHAIN

SULFOLOBUS ACIDOCALDARIUS

 318-345
 562-589


PATPA_SYNP1
ATP SYNTHASE ALPHA

SYNECHOCOCCUS SP
  7-44



CHAIN


PATPA_SYNP6
ATP SYNTHASE ALPHA

SYNECHOCOCCUS SP
  8-45
 362-389



CHAIN


PATPA_SYNY3
ATP SYNTHASE ALPHA

SYNECHOCYSTIS SP
  8-37
 454-500



CHAIN


PATPA_THEP3
ATP SYNTHASE ALPHA

THERMOPHILIC BACTERIUM PS-3
  9-36



CHAIN


PATPA_VIBAL
ATP SYNTHASE ALPHA

VIBRIO ALGINOLYTICUS

 464-513



CHAIN


PATPB_ANASP
ATP SYNTHASE BETA CHAIN

ANABAENA SP
 280-307
 370-397


PATPB_BACFI
ATP SYNTHASE BETA CHAIN

BACILLUS FIRMUS

 163-190
 358-385


PATPB_MYCGA
ATP SYNTHASE BETA CHAIN

MYCOPLASMA GALLISEPTICUM

 375-402


PATPB_RHORU
ATP SYNTHASE BETA CHAIN

RHODOSPIRILLUM RUBRUM

 359-386


PATPB_SULAC
ATPASE BETA CHAIN

SULFOLOBUS ACIDOCALDARIUS

 164-191


PATPB_SYNP1
ATP SYNTHASE BETA CHAIN

SYNECHOCOCCUS SP
 381-408


PATPB_SYNP6
ATP SYNTHASE BETA CHAIN

SYNECHOCOCCUS SP
 291-318
 381-408


PATPB_SYNY3
ATP SYNTHASE BETA CHAIN

SYNECHOCYSTIS SP
 381-408


PATPD_ANASP
ATP SYNTHASE DELTA CHAIN

ANABAENA SP
 109-139
 143-170


PATPD_BACFI
ATP SYNTHASE DELTA CHAIN

BACILLUS FIRMUS

 63-90
 133-160


PATPD_BACME
ATP SYNTHASE DELTA CHAIN

BACILLUS MEGATERIUM

 132-159


PATPD_ENTFA
ATP SYNTHASE DELTA CHAIN

ENTEROCOCCUS FAECALIS

 14-41


PATPD_PROMO
ATP SYNTHASE DELTA CHAIN

PROPIONIGENIUM MODESTUM

 79-116
 118-149


PATPD_RHOBL
ATP SYNTHASE DELTA CHAIN

RHODOPSEUDOMONAS BLASTICA

 125-152


PATPD_RHORU
ATP SYNTHASE DELTA CHAIN

RHODOSPIRILLUM RUBRUM

 119-146


PATPD_SYNP1
ATP SYNTHASE DELTA CHAIN

SYNECHOCOCCUS SP
 100-127


PATPD_SYNY3
ATP SYNTHASE DELTA CHAIN

SYNECHOCYSTIS SP
 113-147


PATPD_VIBAL
ATP SYNTHASE DELTA CHAIN

VIBRIO ALGINOLYTICUS

 110-137


PATPE_BACFI
ATP SYNTHASE EPSILON

BACILLUS FIRMUS

 53-80



CHAIN


PATPE_MYCGA
ATP SYNTHASE EPSILON

MYCOPLASMA GALLISEPTICUM

 99-126



CHAIN


PATPE_PROMO
ATP SYNTHASE EPSILON

PROPIONIGENIUM MODESTUM

 100-127



CHAIN


PATPE_SYNP1
ATP SYNTHASE EPSILON

SYNECHOCOCCUS SP
 72-106



CHAIN


PATPF_ANASP
ATP SYNTHASE B CHAIN

ANABAENA SP
 17-44
 51-78
 137-164


PATPF_BACFI
ATP SYNTHASE B CHAIN

BACILLUS FIRMUS

 110-151


PATPF_BACME
ATP SYNTHASE B CHAIN

BACILLUS MEGATERIUM

 55-85
 122-170


PATPF_MYCGA
ATP SYNTHASE B CHAIN

MYCOPLASMA GALLISEPTICUM

 82-135
 170-197


PATPF_SNYP1
ATP SYNTHASE B CHAIN

SYNECHOCOCCUS SP
 15-49
 111-159


PATPF_SYNP6
ATP SYNTHASE B CHAIN

SYNECHOCOCCUS SP
 12-39
 128-155


PATPF_THEP3
ATP SYNTHASE B CHAIN

THERMOPHILIC BACTERIUM PS-3
 50-77



PRECURSOR


PATPG_ANASP
ATP SYNTHASE GAMMA

ANABAENA SP
 276-310



CHAIN


PATPG_ECOLI
ATP SYNTHASE GAMMA

ESCHERICHIA COLI

 253-283



CHAIN


PATPG_MYCGA
ATP SYNTHASE GAMMA

MYCOPLASMA GALLISEPTICUM

 28-62
 92-140



CHAIN


PATPG_RHORU
ATP SYNTHASE GAMMA

RHODOSPIRILLUM RUBRUM

 270-297



CHAIN


PATPG_SYNP1
ATP SYNTHASE GAMMA

SYNECHOCOCCUS SP
 280-307



CHAIN


PATPG_SYNY3
ATP SYNTHASE GAMMA

SYNECHOCYSTIS SP
 96-126
 280-307



CHAIN


PATP1_MYCGA
ATP SYNTHASE PROTEIN I

MYCOPLASMA GALLISPETICUM

 133-167


PATPX_ANASP
ATP SYNTHASE B′ CHAIN

ANABAENA SP
 129-156


PATPX_BACFI
ATP SYNTHASE BETA CHAIN

BACILLUS FIRMUS

 162-189
 356-383


PATPX_RHORU
ATP SYNTHASE B′ CHAIN

RHODOSPIRILLUM RUBRUM

 40-74


PATPX_SYNP1
ATP SYNTHASE B′ CHAIN

SYNECHOCOCCUS SP
 57-110
 128-155


PATPX_SYNP6
ATP SYNTHASE B′ CHAIN

SYNECHOCOCCUS SP
 70-100


PATPX_SYNY3
ATP SYNTHASE B′ CHAIN

SYNECHOCYSTIS SP
 108-135


PATPZ_BACME
ATP SYNTHASE PROTEIN I

BACILLUS MEGATERIUM

 14-62


PATPZ_SYNP1
ATP SYNTHASE PROTEIN I

SYNECHOCOCCUS SP
 90-131


PAVRB_PSESG
AVIRULENCE B PROTEIN

PSEUDOMONAS SYRINGAE

 184-211
 233-260


PBA71_EUBSP
7-ALPHA-HYDROXYSTEROID

EUBACTERIUM SP
 26-53



DEHYDROGENASE


PBA72_EUBSP
7-ALPHA-HYDROXYSTEROID

EUBACTERIUM SP
 26-53



DEHYDROGENASE


PBACH_HALHM
HALORHODOPSIN

HALOBACTERIUM HALOBIUM

 145-179


PBACH_HALSG
HALORHODOPSIN

HALOBACTERIUM SP
 180-214



PRECURSOR


PBAES_ECOLI
SENSOR PROTEIN BAES

ESCHERICHIA COLI

 152-186


PBAG_STRAG
IGA FC RECEPTOR

STREPTOCOCCUS AGALACTIAE

 92-119
 138-204
 267-306
 343-385
 487-524
 562-589
1014-1041



PRECURSOR


PBAHG_VITSP
BACTERIAL HEMOGLOBIN

VITREOSCILLA SP
 119-146


PBAIC_EUBSP
BILE ACID-INDUCIBLE

EUBACTERIUM SP
 423-450



OPERON PROTEIN C


PBARA_ECOLI
SENSOR PROTEIN BARA

ESCHERICHIA COLI

 334-361
 425-455


PBASS_ECOLI
SENSOR PROTEIN BASS

ESCHERICHIA COLI

 122-156


PBAT_HALHA
PUTATIVE BACTERIO-OPSIN

HALOBACTERIUM HALOBIUM

 408-442



ACTIVATOR


PBAX_ECOLI
BAX PROTEIN

ESCHERICHIA COLI

 21-64


PBCCP_ECOLI
BIOTIN CARBOXYL CARRIER

ESCHERICHIA COLI

  6-35



PROTEIN


PBCHH_RHOCA
METHYLTRANSFERASE

RHODOBACTER CAPSULATUS

1000-1032


PBCHN_RHOCA
PROTOCHLOROPHYLLIDE

RHODOBACTER CAPSULATUS

 249-276



REDUCTASE 46 KD CHAIN


PBCN5_CLOPE
BACTERIOCIN BCN5

CLOSTRIDIUM PERFRINGENS

 72-99
 585-646


PBCPA_PROAE
BACTERIOCHLOROPHYLL A

PROSTHECOCHLORIS AESTUARII

 63-93



PROTEIN


PBCSC_ACEXY
CELLULOSE SYNTHASE

ACETOBACTER XYLINUM

 131-158
1055-1082



OPERON C PROTEIN


PBCSD_ACEXY
CELLULOSE SYNTHASE

ACETOBACTER XYLINUM

 10-37



OPERON D PROTEIN


PBENA_ACICA
BENZOATE 1,2-DIOXYGENASE

ACINETOBACTER CALCOACETICUS

 190-217



ALPHA SUBUNIT


PBETT_ECOLI
HIGH AFFINITY CHOLINE

ESCHERICHIA COLI

 243-270



TRANSPORT PROTEIN


PBEXA_HAEIN
BEXA PROTEIN

HAEMOPHILUS INFLUENZAE

 23-50


PBEXC_HAEIN
BEXC PROTEIN

HAEMOPHILUS INFLUENZAE

 157-184
 226-253


PBEXD_HAEIN
BEXD PROTEIN

HAEMOPHILUS INFLUENZAE

 205-239


PBFR_NITWI
BACTERIOFERRITIN

NITROBACTER WINOGRADSKYI

  8-35


PBGA2_ECOLI
EVOLVED BETA-GALACTO-

ESCHERICHIA COLI

 955-985



SIDASE ALPHA-SUBUNIT


PBGAL_BACST
BETA-GALACTOSIDASE

BACILLUS STEAROTHERMOPHILUS

 599-633


PBGAL_CLOAB
BETA-GALACTOSIDASE

CLOSTRIDIUM ACETOBUTYLICUM

 824-851


PBGAL_CLOTU
BETA-GALACTOSIDASE

CLOSTRIDIUM THERMO-
 161-191





SULFUROGENES



PBGAL_KLEPN
BETA-GALACTOSIDASE

KLEBSIELLA PNEUMONIAE

 245-272


PBGAL_LACDE
BETA-GALACTOSIDASE

LACTOBACILLUS DELBRUECKII

 305-332


PBGAL_STRTR
BETA-GALACTOSIDASE

STREPTOCOCCUS THERMOPHILUS

 188-215


PBGAL_SULSO
BETA-GALACTOSIDASE

SULFOLOBUS SOLFATARICUS

 59-86
 179-206


PBGAM_LEULA
BETA-GALACTOSIDASE

LEUCONOSTOC LACTIS

 129-156



SMALL SUBUNIT


PBGAM_SULSO
BETA-GALACTOSIDASE

SULFOLOBUS SOLFATARICUS

 106-140


PBGLA_CLOTM
BETA-GLUCOSIDASE A

CLOSTRIDIUM THERMOCELLUM

 353-380
 418-445


PBGLB_CLOTM
THERMOSTABLE BETA-

CLOSTRIDIUM THERMOCELLUM

 259-286
 375-409
 554-581
 631-665



GLUCOSIDASE B


PBGLR_ECOLI
BETA-GLUCURONIDASE

ESCHERICHIA COLI

 464-494
 536-563


PBGLS_AGRSP
BETA-GLUCOSIDASE

AGROBACTERIUM SP
 421-448


PBGLS_BUTFI
BETA-GLUCOSIDASE A

BUTYRIVIBRIO FIBRISOLVENS

 85-112
 435-462
 692-719
 738-765


PBIN3_STAAU
POTENTIAL DNA-INVERTASE

STAPHYLOCOCCUS AUREUS

 60-87



BIN3


PBINL_STAAU
TRANSPOSON TN552

STAPHYLOCOCCUS AUREUS

 163-197



RESOLVASE


PBINR_STAAU
DNA-INVERTASE BINR

STAPHYLOCOCCUS AUREUS

 163-190


PGIOA_BACSH
AMINOTRANSFERASE

BACILLUS SPHAERICUS

 33-60


PBIOB_BACSH
BIOTIN SYNTHETASE

BACILLUS SPHAERICUS

 145-172


PBIOB_ECOLI
BIOTIN SYNTHETASE

ESCHERICHIA COLI

 130-157


PBIOD_BACSH
DETHIOBIOTIN SYNTHASE

BACILLUS SPHAERICUS

 144-171


PBLA1_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

 91-118
 275-305



PRECURSOR, TYPE I


PBLA1_HAEIN
BETA-LACTAMASE ROB-1

HAEMOPHILUS INFLUENZAE

 152-179
 204-231



PRECURSOR


PBLA2_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

 18-67
 201-228



PRECURSOR, TYPE II


PBLA2_BACSP
BETA-LACTAMASE

BACILLUS SP
 18-67



PRECURSOR, TYPE II


PBLA3_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

 35-83
 95-129



PRECURSOR, TYPE III


PBLA4_PSEAE
BETA-LACTAMASE PSE-4

PSEUDOMONAS AERUGINOSA

 19-50



PRECURSOR


PBLAB_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

 20-66
 200-227



PRECURSOR, TYPE II


PBLAB_BACFR
BETA-LACTAMASE

BACTEROIDES FRAGILIS

 22-49



PRECURSOR, TYPE II


PBLAC_BACCE
BETA-LACTAMASE

BACILLUS CEREUS

 93-120
 276-303



PRECURSOR, TYPE I


PBLAC_BACLI
BETA-LACTAMASE

BACILLUS LICHENIFORMIS

 47-74
 86-115



PRECURSOR


PBLAC_PROMI
BETA-LACTAMASE

PROTEUS MIRABILIS

 191-221



PRECURSOR


PBLAC_PROVU
BETA-LACTAMASE

PROTEUS VULGARIS

  4-38
 240-267


PBLAC_STRAL
BETA-LACTAMASE

STREPTOMYCES ALBUS G
 43-70



PRECURSOR


PBLAD_KLEPN
BETA-LACTAMASE

KLEBSIELLA PNEUMONIAE

 121-148



PRECURSOR


PBLAI_STAAU
PENICILLINASE REPRESSOR

STAPHYLOCOCCUS AUREUS

 19-74
 99-126


PBLAO_ECOLI
BETA-LACTAMASE

ESCHERICHIA COLI

 118-166
 235-262



PRECURSOR


PBLAP_ECOLI
BETA-LACTAMASE PSE-2

ESCHERICHIA COLI

 155-196



PRECURSOR


PBLAR_BACLI
REGULATORY PROTEIN

BACILLUS LICHENIFORMIS

 129-156
 515-552



BLAR1


PBLAR_STAAU
REGULATORY PROTEIN

STAPHYLOCOCCUS AUREUS

 87-114
 122-161
 234-261
 281-312
 503-539



BLAR1


PBMP_TREPA
BASIC MEMBRANE PROTEIN

TREPONEMA PALLIDUM

 312-346



PRECURSOR


PBMR_BACSU
MULTIDRUG RESISTANCE

BACILLUS SUBTILIS

 277-304



PROTEIN


PBNZA_PSEPU
BENZENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

 36-63



ALPHA SUBUNIT


PBNZB_PSEPU
BENZENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

 119-153



BETA SUBUNIT


PBNZD_PSEPU
P4 SUBUNIT

PSEUDOMONAS PUTIDA

 179-213


PBPS2_DESAM
BPS2 PROTEIN

DESULFUROLOBUS AMBIVALENS

 157-237
 242-290
 311-355
 391-425
 543-573


PBRAB_PSEAE
CARRIER PROTEIN

PSEUDOMONAS AERUGINOSA

 260-287
 313-340


PBRAE_PSEAE
TRANSPORT PROTEIN BRAE

PSEUDOMONAS AERUGINOSA

 254-281


PBRAG_PSEAE
BRAG PROTEIN

PSEUDOMONAS AERUGINOSA

  7-34


PBTUB_ECOLI
VITAMIN B12 RECEPTOR

ESCHERICHIA COLI

 439-466



PRECURSOR


PBTUE_ECOLI
VITAMIN B12 TRANSPORT

ESCHERICHIA COLI

  6-33



PERIPLASMIC PROTEIN


PBVGA_BORPE
TRANSCRIPTION REGULATOR

BORDETELLA PERTUSSIS

 174-205



BVGA





BORDETELLA BRONCHISEPTICA



PBVGB_BORPE
PERIPLASMIC PROTEIN BVGB

BORDETELLA PERTUSSIS

 116-143



PRECURSOR


PBVGC_BORPE
SENSOR PROTEIN BVGC

BORDETELLA PERTUSSIS

 39-66
 202-229


PBVGS_BORBR
VIRULENCE BVGS PROTEIN

BORDETELLA BRONCHISEPTICA

 113-143
 341-368
 501-531



PRECURSOR


PBXA_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

 313-340
 686-729
 733-762
 815-842
 851-893
 968-995
1159-1207



TYPE A PRECURSOR


PBXB_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

 666-693
 720-762
 802-832
 853-890
1004-1031
1058-1089



TYPE B PRECURSOR


PBXC1_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

 86-113
 314-341
 730-773
 798-825
 850-892



TYPE C1 PRECURSOR


PBXD_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

 473-500
 526-576
 727-770
 804-831
 847-892
 906-963
1060-1087



TYPE D PRECURSOR


PBXE_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

 254-291
 350-381
 704-753
 773-811
 890-914
 992-1019
1115-1149



TYPE E PRECURSOR


PBXE_CLOBU
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

 254-291
 350-381
 704-753
 774-808
 890-917
 992-1019
1115-1149



TYPE E PRECURSOR


PBXF_CLOBO
BOTULINUM NEUROTOXIN

CLOSTRIDIUM BOTULINUM

 669-710
 735-772
 892-919
1013-1040
1095-1122
1183-1210



TYPE F PRECURSOR


PC550_MICAE
CYTOCHROME C550

MICROCYSTIS AERUGINOSA

  3-30


PCADA_BACFI
PROBABLE CADMIUM-

BACILLUS FIRMUS

 30-57
 100-131
 165-192
 276-306
 533-567



TRANSPORTING ATPASE


PCADA_STAAU
PROBABLE CADMIUM-

STAPHYLOCOCCUS AUREUS

 282-309
 536-570



TRANSPORTING ATPASE


PCADC_ECOLI
TRANSCRIPTIONAL

ESCHERICHIA COLI

 54-85
 412-443



ACTIVATOR CADC


PCAFA_YERPE
F1 CAPSULE ANCHORING

YERSINIA PESTIS

 203-240
 416-457
 530-557
 619-646



PROTEIN PRECURSOR


PCAPA_BACAN
CAPA PROTEIN

BACILLUS ANTHRACIS

 108-138


PCAPB_BACAN
CAPB PROTEIN

BACILLUS ANTHRACIS

 36-70


PCAPP_ANANI
PHOSPHOENOLPYRUVATE

ANACYSTIS NIDULANS

 248-293



CARBOXYLASE


PCAPP_ANASP
PHOSPHOENOLPYRUVATE

ANABAENA SP
 98-125
 157-184
 687-728



CARBOXYLASE


PCAPP_CORGL
PHOSPHOENOLPYRUVATE

CORYNEBACTERIUM GLUTMICUM

 15-42



CARBOXYLASE


PCAPP_ECOLI
PHOSPHOENOLPYRUVATE

ESCHERICHIA COLI

 35-62



CARBOXYLASE


PCARA_BACSU
CARBAMOYL-PHOSPHATE

BACILLUS SUBTILIS

 274-319



SYNTHASE


PCARB_BACSU
CARBAMOYL-PHOSPHATE

BACILLUS SUBTILIS

 790-831



SYNTHASE


PCARB_ECOLI
CARBAMOYL-PHOSPHATE

ESCHERICHIA COLI

 454-481



SYNTHASE LARGE CHAI


PCAT2_STAAU
CHLORAMPHENICOL

STAPHYLOCOCCUS AUREUS

  7-34
 87-114



ACETYLTRANSFERASE


PCAT3_STAAU
CHLORAMPHENICOL

STAPHYLOCOCCUS AUREUS

  7-34
 87-114



ACETYLTRANSFERASE


PCATA_ACICA
CATECHOL 1,2-DIOXYGENASE

ACINETOBACTER CALCOACETICUS

 31-65


PCATA_BACST
PEROXIDASE/CATALASE

BACILLUS STEAROTHERMOPHILUS

 440-470


PCATA_ECOLI
CATALASE HPI

ESCHERICHIA COLI

 579-606


PCATA_MICLU
CATALASE

MICROCOCCUS LUTEUS

 453-480


PCATA_SALTY
CATALASE HPI

SALMONELLA TYPHIMURIUM

 515-542
 580-607


PCATE_ECOLI
CATALASE HPII

ESCHERICHIA COLI

 175-202


PCAT_CAMCO
CHLORAMPHENICOL

CAMPYLOBACTER COLI

 84-111



ACETYLTRANSFERASE


PCAT_CLOBU
CHLORAMPHENICOL

CLOSTRIDIUM BUTYRICUM

 88-115



ACETYLTRANSFERASE


PCAT_ECOLI
CHLORAMPHENICOL

ESCHERICHIA COLI

 92-119



ACETYLTRANSFERASE


PCAT_PROMI
CHLORAMPHENICOL

PROTEUS MIRABILIS

 92-119



ACETYLTRANSFERASE


PCAT_STAIN
CHLORAMPHENICOL

STAPHYLOCOCCUS INTERMEDIUS

  7-34
 87-114



ACETYLTRANSFERASE


PCAT_STRAG
CHLORAMPHENICOL

STREPTOCOCCUS AGALACTIAE

  7-34
 87-114



ACETYLTRANSFERASE


PCBHE_COXBU
CBHE PROTEIN

COXIELLA BURNETII

 209-236


PCBPT_THEVU
CARBOXYPEPTIDASE T

THERMOACTINOMYCES VULGARIS

 48-75



PRECURSOR


PCCA_ECOLI
TRNA NUCLEOTIDYL-

ESCHERICHIA COLI

 376-403



TRANSFERASE


PCCMK_SYNP7
CO2 CONC MECH PROTEIN

SYNECHOCOCCUS SP
 29-56



CCMK


PCCMM_SYNP7
CO2 CONC MECH PROTEIN

SYNECHOCOCCUS SP
 212-256
 331-372
 445-486



CCMM


PCDAS_THEET
CYCLOMALTODEXTRINASE

THERMOANAEROBACTER

 305-332





ETHANOLICUS



PCDG1_BACMA
CYCLOMALTODEXT

BACILLUS MACERANS

 439-466
 616-643



GLUCANOTRANS PRECURSOR


PCDG2_BACMA
CYCLOMALTODEXT

BACILLUS MACERANS

 210-251
 436-466
 615-642



GLUCANOTRANS PRECURSOR


PCDGT_BACCI
CYCLOMALTODEXT

BACILLUS CIRCULANS

 217-244
 442-472
 594-651



GLUCANOTRANS PRECURSOR


PCDGT_BACLI
CYCLOMALTODEXT

BACILLUS LICHENIFORMIS

 217-244
 442-472
 594-647



GLUCANOTRANS PRECURSOR


PCDGT_BACOH
CYCLOMALTODEXT

BACILLUS OHBENSIS

 430-471



GLUCANOTRANS PRECURSOR


PCDGT_BAC50
CYCLOMALTODEXT

BACILLUS SP
 210-237
 435-462
 615-642



GLUCANOTRANS PRECURSOR


PCDGT_BAC52
CYCLOMALTODEXT

BACILLUS SP
 409-471



GLUCANOTRANS PRECURSOR


PCDGT_BAC53
CYCLOMALTODEXT

BACILLUS SP
 210-237
 435-462
 614-641



GLUCANOTRANS PRECURSOR


PCDGT_BACSP
CYCLOMALTODEXT

BACILLUS SP
 210-237
 435-465
 615-642



GLUCANOTRANS PRECURSOR


PCDGT_BACSS
CYCLOMALTODEXT

BACILLUS SP
 217-244
 442-472
 594-651



GLUCANOTRANS PRECURSOR


PCDGT_BACST
CYCLOMALTODEXT

BACILLUS STEAROTHERMOPHILUS

 586-646



GLUCANOTRANS PRECURSOR


PCDGT_KLEPN
CYCLOMALTODEXT

KLEBSIELLA PNEUMONIAE

 212-239



GLUCANOTRANS PRECURSOR


PCEA1_ECOLI
COLICIN E1 PROTEIN

ESCHERICHIA COLI

 44-71
 285-326


PCEA1_SHISO
COLICIN E1* PROTEIN

SHIGELLA SONNEI

 44-71
 284-325
 413-440


PCEA2_ECOLI
COLICIN E2

ESCHERICHIA COLI

 334-368


PCEA3_ECOLI
COLICIN E3

ESCHERICHIA COLI

 334-368


PCEA6_ECOLI
COLICIN E6

ESCHERICHIA COLI

 334-368


PCEAB_ECOLI
COLICIN B

ESCHERICHIA COLI

 283-341


PCEAD_ECOLI
COLICIN D

ESCHERICHIA COLI

 284-311


PCEAM_ECOLI
COLICIN M

ESCHERICHIA COLI

 178-227


PCEAN_ECOLI
COLICIN N

ESCHERICHIA COLI

 119-146
 173-200


PCEA_CITFR
COLICIN A

CITROBACTER FREUNDII

 228-258


PCEFD_STRCL
ISOPENICILLIN N EPIMERASE

STREPTOMYCES CLAVULIGERUS

 370-397


PCEIA_ECOLI
COLICIN IA PROTEIN

ESCHERICHIA COLI

 68-95
 255-282
 378-412
 415-452


PCEIB_ECOLI
COLICIN IB PROTEIN

ESCHERICHIA COLI

 68-95
 255-282
 378-412
 415-452


PCELA_ACEXY
UTP URIDYLYLTRANSFERASE

ACETOBACTER XYLINUM

 59-89


PCELA_ECOLI
PROTEIN CELA

ESCHERICHIA COLI

 76-103


PCFAA_ECOLI
CFA/1 FIMBRIAL SUBUNIT A

ESCHERICHIA COLI

 27-58



PRECURSOR


PCFAC_ECOLI
CFA/1 FIMBRIAL SUBUNIT C

ESCHERICHIA COLI

 138-187
 388-456
 561-595



PRECURSOR


PCFAD_ECOLI
CFA/1 FIMBRIAL SUBUNIT D

ESCHERICHIA COLI

 133-160


PCFAE_ECOLI
CFA/1 FIMBRIAL SUBUNIT E

ESCHERICHIA COLI

 180-207
 244-271


PCH10_ACYPS
10 KD CHAPERONIN

ACYRTHOSIPHON PISUM

 57-95





SYMBIOTIC BACTERIU



PCH10_BACSU
10 KD CHAPERONIN

BACILLUS SUBTILIS

 66-93


PCH10_CHLTR
10 KD CHAPERONIN

CHLAMYDIA TRACHOMATIS

 64-91


PCH10_ECOLI
10 KD CHAPERONIN

ESCHERICHIA COLI

 57-84


PCH10_HAEDU
10 KD CHAPERONIN

HAEMOPHILUS DUCREYI

 68-95


PCH10_LEGMI
10 KD CHAPERONIN

LEGIONELLA MICDADEI

 57-84


PCH10_RICTS
10 KD CHAPERONIN

RICKETTSIA TSUTSUGAMUSHI

 65-92


PCH10_THEP3
10 KD CHAPERONIN

THERMOPHILIC BACTERIUM PS-3
 66-93


PCH60_ACYPS
60 KD CHAPERONIN

ACYRTHOSIPHON PISUM

 341-382





SYMBIOTIC BACTERIU



PCH60_AGRTU
60 KD CHAPERONIN

AGROBACTERIUM TUMEFACIENS

 117-163
 339-370
 425-466


PCH60_AMOPS
60 KD CHAPERONIN

AMOEBA PROTEUS SYMBIOTIC

 299-333





BACTERIUM



PCH60_BACSU
60 KD CHAPERONIN

BACILLUS SUBTILIS

 298-332
 337-364


PCH60_BORBU
60 KD CHAPERONIN

BORRELIA BURGODORFERI

 125-163
 299-368


PCH60_BRUAB
60 KD CHAPERONIN

BRUCELLA ABORTUS

 117-144
 339-366


PCH60_CHLPN
60 KD CHAPERONIN

CHLAMYDIA PNEUMONIAE

  4-31


PCH60_CHLTR
60 KD CHAPERONIN

CHLAMYDIA TRACHOMATIS

  4-31


PCH60_CHRVI
60 KD CHAPERONIN

CHROMATIUM VINOSUM

 300-327


PCH60_CLOAB
60 KD CHAPERONIN

CLOSTRIDIUM ACETOBUTYLICUM

 238-332
 337-364
 455-482


PCH60_CLOPE
60 KD CHAPERONIN

CLOSTRIDIUM PERFRINGENS

 337-368
 417-444


PCH60_COXBU
60 KD CHAPERONIN

COXIELLA BURNETII

 300-327
 348-382


PCH60_HAEDU
60 KD CHAPERONIN

HAEMOPHILUS DUCREYI

 339-366
 417-444


PCH60_LEGMI
60 KD CHAPERONIN

LEGIONELLA MICDADEI

 299-333


PCH60_LEGPN
60 KD CHAPERONIN

LEGIONELLA PNEUMOPHILA

 298-332
 452-479


PCH60_MYCLE
60 KD CHAPERONIN

MYCOBACTERIUM LEPRAE

 125-152
 236-263
 337-364


PCH60_MYCTU
60 KD CHAPERONIN

MYCOBACTERIUM TUBERCULOSIS

 125-152
 337-364




& BOVIS


PCH60_PSEAE
60 KD CHAPERONIN

PSEUDOMONAS AERUGINOSA

 339-366


PCH60_RHILV
60 KD CHAPERONIN

RHIZOBIUM LEGUMINOSARUM

 117-163
 322-370
 425-466


PCH60_RICTS
60 KD CHAPERONIN

RICKETTSIA TSUTSUGAMUSHI

 103-130
 293-336
 360-394


PCH60_SYNP7
60 KD CHAPERONIN

SYNECHOCOCCUS SP
 308-335
 337-380


PCH60_SYNY3
60 KD CHAPERONIN

SYNECHOCYSTIS SP
 338-365
 455-489


PCH60_THEP3
60 KD CHAPERONIN

THERMOPHILIC BACTERIUM PS-3
 337-364


PCH62_STRAL
60 KD CHAPERONIN 2

STREPTOMYCES ALBUS G
 116-148
 337-364


PCHB_VIBHA
N,N′-DIACETYLCHITOBIASE

VIBRIO HARVEYI

 21-48
 772-799



PRECURSOR


PCHEA_BACSU
CHEMOTAXIS PROTEIN CHEA

BACILLUS SUBTILIS

 373-400
 590-617


PCHEA_ECOLI
CHEMOTAXIS PROTEIN CHEA

ESCHERICHIA COLI

 256-286


PCHEA_SALTY
CHEMOTAXIS PROTEIN CHEA

SALMONELLA TYPHIMURIUM

 162-197


PCHER_BACSU
CHEMOTAXIS PROTEIN

BACILLUS SUBTILIS

 124-151



METHYLTRANSFERASE


PCHEW_ECOLI
PURINE-BINDING CHEMO-

ESCHERICHIA COLI

 68-115



TAXIS PROTEIN


PCHEW_SALTY
PURINE-BINDING CHEMO-

SALMONELLA TYPHIMURIUM

 88-115



TAXIS PROTEIN


PCHEY_ECOLI
CHEMOTAXIS PROTEIN CHEY

ESCHERICHIA COLI

 22-49


PCHEY_SALTY
CHEMOTAXIS PROTEIN CHEY

SALMONELLA TYPHIMURIUM

 22-49


PCHI1_BACCI
CHITINASE A1 PRECURSOR

BACILLUS CIRCULANS

 491-518
 566-593


PCHIA_ALTSO
CHITINASE A PRECURSOR

ALTEROMONAS SP
 345-372


PCHIA_SERMA
CHITINASE A PRECURSOR

SERRATIA MARCESCENS

 346-373


PCHID_BACCI
CHITINASE D PRECURSOR

BACILLUS CIRCULANS

 102-161
 189-216


PCHIT_SACER
CHITINASE

SACCHAROPOLYSPORA ERYTHRAEA

 92-119


PCHIT_STRPL
CHITINASE 63 PRECURSOR

STREPTOMYCES PLICATUS

 250-284


PCHMU_BACSU
CHORISMATE MUTASE

BACILLUS SUBTILIS

  3-37


PCHOD_BREST
CHOLESTEROL OXIDASE

BREVIBACTERIUM STEROLICUM

 263-290



PRECURSOR


PCHTA_VIBCH
CHOLERA ENTEROTOXIN, A

VIBRIO CHOLERAE

 79-106



CHAIN PRECURSOR


PCHVA_AGRTU
BETA-(1->2)GLUCAN EXPORT

AGROBACTERIUM TUMEFACIENS

  4-31
 181-208



PROTEIN


PCHVE_AGRTU
RECEPTOR PROTEIN CHVE

AGROBACTERIUM TUMEFACIENS

 100-127



PRECURSOR


PCIRI_CITFR
CITROLYSIN PROTEIN I

CITROBACTER FREUNDII

 435-462


PCIRA_ECOLI
COLICIN I RECEPTOR

ESCHERICHIA COLI

 146-173



PRECURSOR


PCISA_BACSU
PUTATIVE DNA

BACILLUS SUBTILIS

 378-405



RECOMBINASE


PCISY_ACIAN
CITRATE SYNTHASE

ACINETOBACTER ANITRATUM

 143-170


PCISY_BACCO
CITRATE SYNTHASE

BACILLUS COAGULANS

 24-51


PCITA_SALTY
CITRATE-PROTON SYMPORT

SALMONELLA TYPHIMURIUM

 154-181


PCITN_KLEPN
CITRATE-SODIUM SYMPORT

KLEBSIELLA PNEUMONIAE

 194-221


PCITN_SALDU
CITRATE-SODIUM SYMPORT

SALMONELLA DUBLIN

 194-221


PCITN_SALPU
CITRATE-SODIUM SYMPORT

SALMONELLA PULLORUM

 194-221


PCLCA_PSEPU
CHLOROCATECHOL 1,2-

PSEUDOMONAS PUTIDA

 13-36



DIOXYGENASE


PCLD1_ECOLI
CHAIN LENGTH DETER-

ESCHERICHIA COLI

 133-167



MINANT PROTEIN


PCLD2_ECOLI
CHAIN LENGTH DETER-

ESCHERICHIA COLI

 178-212
 250-277



MINANT PROTEIN


PCLD_SALTY
CHAIN LENGTH DETER-

SALMONELLA TYPHIMURIUM

 96-127
 151-212



MINANT PROTEIN


PCLOS_CLOHI
ALPHA-CLOSTRIPAIN

CLOSTRIDIUM HISTOLYTICUM

 30-58
 497-524



PRECURSOR


PCLPA_ECOLI
ATP-BINDING SUBUNIT CLPA

ESCHERICHIA COLI

 655-695


PCLPA_RHOBL
CLPA HOMOLOG PROTEIN

RHODOPSEUDOMONAS BLASTICA

 439-466


PCLPB_BACNO
CLPB HOMOLOG PROTEIN

BACTEROIDES NODOSUS

 116-157
 442-476
 558-595


PCLPB_ECOLI
CLPB PROTEIN

ESCHERICHIA COLI

 444-489
 563-590


PCLPX_AZOVI
CLPX HOMOLOG PROTEIN

AZOTOBACTER VINELANDII

 215-242
 332-359


PCLPX_ECOLI
ATP-BINDING SUBUNIT CLPX

ESCHERICHIA COLI

 255-282


PCN16_ECOLI
2′,3′-CYCLIC-NUC 2′-

ESCHERICHIA COLI

 50-77



PHOSPHODIESTERASE



PRECURS


PCODA_ECOLI
CYTOSINE DEAMINASE

ESCHERICHIA COLI

 102-129


PCOM1_BACSU
A COMPETENCE PROTEIN 1

BACILLUS SUBTILIS

 108-135
 186-213


PCOMQ_BACSU
COMPETENCE REGULATORY

BACILLUS SUBTILIS

 154-239



PROTEIN


PCOP6_STAAU
COP-6 PROTEIN

STAPHYLOCOCCUS AUREUS

  7-53


PCOPB_PSESM
COPPER RESISTANCE

PSEUDOMONAS SYRINGAE

 140-167



PROTEIN B PRECURSOR


PCORA_ECOLI
MAGNESIUM/COBALT

ESCHERICHIA COLI

 134-161



TRANSPORT PROTEIN CORA


PCORA_SALTY
MAGNESIUM/COBALT

SALMONELLA TYPHIMURIUM

 134-161



TRANSPORT PROTEIN CORA


PCOTE_BACSU
SPORE COAT PROTEIN E

BACILLUS SUBTILIS

 42-92


PCOX1_BRAJA
CYTOCHROME C OXIDASE

BRADYRHIZOBIUM JAPONICUM

 380-407



POLYPEPTIDE I


PCOX1_PARDE
CYTOCHROME C OXIDASE

PARACOCCUS DENITRIFICANS

 383-410



POLYPEPTIDE I


PCOX1_RHOSH
CYTOCHROME C OXIDASE

RHODOBACTER SPHAEROIDES

 396-423



POLYPEPTIDE I


PCOXX_BACFI
OXIDASE ASSEMBLY FACTOR

BACILLUS FIRMUS

 36-63


PCOXX_BACSU
OXIDASE ASSEMBLY FACTOR

BACILLUS SUBTILIS

 49-76


PCPPB_NEIGO
CRYPTIC PLASMID PROTEIN B

NEISSERIA GONORRHOEAE

 72-99
 165-209


PCPSB_ECOLI
MANNOSE-1-PHOSPHATE

ESCHERICHIA COLI

 309-336



GUANYLYLTRANSFERASE


PCPSB_SALTY
MANNOSE-1-PHOSPHATE

SALMONELLA TYPHIMURIUM

 311-338



GUANYLYLTRANSFERASE


PCPXA_ECOLI
SENSOR PROTEIN CPXA

ESCHERICHIA COLI

 254-281


PCPXG_STRSQ
CYTOCHROME P450 105C1

STREPTOMYCES SP
 157-184


PCPXJ_SACER
6-DEOXYERYTHRONOLIDE B

SACCHAROPOLYSPORA ERYTHRAEA

 233-260



(DEB) HYDROXYLASE


PCPXM_BACSU
CYTOCHROME P450 109

BACILLUS SUBTILIS

 240-283


PCPXN_ANASP
PROBABLE CYTOCHROME

ANABAENA SP
 98-125



P450


PCR27_BACTI
27 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 153-187


PCR27_BACTM
27 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 153-187


PCR41_BACSH
1.9 KD INSECTICIDAL TOXIN

BACILLUS SPHAERICUS

 276-308


PCR42_BACSH
1.9 KD INSECTICIDAL TOXIN

BACILLUS SPHAERICUS

 276-308


PCR43_BACSH
41.9 KD INSECTICIDAL TOXIN

BACILLUS SPHAERICUS

 276-308


PCR70_BACTD
70 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 207-234
 252-279
 429-463


PCR70_BACTO
75 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 57-84
 125-159
 427-464


PCR70_BACTT
70 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 199-226
 244-271
 421-455


PCR71_BACTK
70 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 93-133
 191-218
 552-615


PCR72_BACTI
72 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 74-111
 383-414


PCR72_BACTK
70 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 93-133
 191-218
 552-593


PCR77_BACTI
77 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 308-335
 502-529


PCREC_ECOLI
SENSOR PROTEIN CREC

ESCHERICHIA COLI

 103-130


PCRED_ECOLI
INNER MEMBRANE PROTEIN

ESCHERICHIA COLI

 94-121



CRED


PCRP_ECOLI
CATABOLITE GENE ACTI-

ESCHERICHIA COLI &
 26-53
 127-154



VATOR

SHIGELLA FLEXNERI



PCRP_SALTY
CATABOLITE GENE ACTI-

SALMONELLA TYPHIMURIUM

 26-53
 127-154



VATOR

KLEBSIELLA AEROGENES



PCRTI_ERWHE
PHYTOENE DEHYDROGENASE

ERWINIA HERBICOLA

 231-258


PCRTI_RHOCA
PHYTOENE DEHYDROGENASE

RHODOBACTER CAPSULATUS

 389-416


PCRTJ_RHOCA
CRTJ PROTEIN

RHODOBACTER CAPSULATUS

 133-160
 334-361
 431-458


PCRYS_BACTA
132 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 721-755
 875-902


PCRYS_BACTB
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 730-771
 865-892
1053-1080


PCRYS_BACTE
133 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 736-770
 890-917


PCRYS_BACTI
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 218-252
 701-728
 775-802


PCRYS_BACTK
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 737-771
 865-892
1053-1080


PCRYS_BACTS
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 736-770
 890-917


PCRYT_BACTA
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 730-771
 865-892
1053-1080


PCRYT_BACTE
134 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 745-779
 899-926


PCRYT_BACTI
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 217-251
 354-384
 701-728
 775-802


PCRYT_BACTK
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 737-771
 865-892


PCRYU_BACTA
135 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 736-770
 890-917


PCRYU_BACTI
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 217-251
 700-727
 774-801


PCRYU_BACTK
131 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 738-772
 866-893
1054-1081


PCRYV_BACTA
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 737-771
 865-892
1053-1080


PCRYV_BACTI
135 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 110-151
 745-772
 819-846


PCRYV_BACTK
133 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 736-770
 890-917


PCRYW_BACTA
130 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 745-779


PCRYW_BACTK
133 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 608-659
 662-696
 892-919


PCRYX_BACTK
139 KD CRYSTAL PROTEIN

BACILLUS THURINGIENSIS

 92-119
 227-254
 605-632
 783-817
 937-964


PCS32_ECOLI
CS3 PILI SYNTHESIS 63 KD

ESCHERICHIA COLI

 42-69
 226-253
 290-317
 344-378



PROTEIN


PCS33_ECOLI
CS3 PILI SYNTHESIS 48 KD

ESCHERICHIA COLI

 90-117
 154-181
 208-242



PROTEIN


PCS34_ECOLI
CS3 PILI SYNTHESIS 33 KD

ESCHERICHIA COLI

 20-47
 74-108



PROTEIN


PCSG_HALHA
CELL SURFACE GLYCO-

HALOBACTERIUM HALOBIUM

 256-283
 584-611



PROTEIN PRECURSOR


PCSG_HALVO
CELL SURFACE GLYCO-

HALOBACTERIUM VOLCANII

 143-170
 237-271



PROTEIN PRECURSOR


PCSG_METFE
CELL SURFACE GLYCO-

METHANOTHERMUS FERVIDUS

 59-107



PROTEIN PRECURSOR


PCSG_METSC
CELL SURFACE GLYCO-

METHANOTHERMUS SOCIABILIS

 59-107



PROTEIN PRECURSOR


PCSOB_ECOLI
CS1 FIMBRIAL SUBUNIT B

ESCHERICHIA COLI

 25-56



PRECURSOR


PCTFA_CLOAB
COA-TRANSFERASE SUBUNIT

CLOSTRIDIUM ACETOBUTYLICUM

 118-145



A


PCTFB_CLOAB
COA-TRANSFERASE SUBUNIT

CLOSTRIDIUM ACETOBUTYLICUM

 174-208



B


PCTRB_NEIME
INNER-MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

 152-193



CTRB


PCTX_PSEAE
CYTOTOXIN PRECURSOR

PSEUDOMONAS AERUGINOSA

 78-115
 124-151
 160-194
 217-251


PCVAA_ECOLI
COLICIN V SECRETION

ESCHERICHIA COLI

 104-138
 163-219



PROTEIN CVAA


PCVAB_ECOLI
COLICIN V SECRETION

ESCHERICHIA COLI

 151-178



PROTEIN CVAB


PCWPM_BACBR
MIDDLE CELL WALL PROTEIN

BACILLUS BREVIS

 197-224
 411-438
1010-1044



PRECURSOR


PCWPO_BACBR
OUTER CELL WALL PROTEIN

BACILLUS BREVIS

 178-216
 560-587
 947-988



PRECURSOR


PCYAA_BORPE
ADENYLATE CYCLASE

BORDETELLA PERTUSSIS

 48-75
 632-659
 962-996



PRECURSOR


PCYAA_YERIN
ADENYLATE CYCLASE

YERSINIA INTERMEDIA

 343-387
 593-620


PCYAB_BORPE
CYAB PROTEIN

BORDETELLA PERTUSSIS

 541-568


PCYAD_BORPE
CYAD PROTEIN

BORDETELLA PERTUSSIS

 178-212


PCYAE_BORPE
CYAE PROTEIN

BORDETELLA PERTUSSIS

 313-340


PCYB_RHOCA
CYTOCHROME B

RHODOBACTER CAPSULATUS

 38-65


PCYDD_ECOLI
TRANSPORT PROTEIN CYDD

ESCHERICHIA COLI

  3-30
 382-409


PCYF_NOSSP
APOCYTOCHROME F

NOSTOC SP
 209-243



PRECURSOR


PCYMO_ACISP
CYCLOHEXANONE MONO-

ACINETOBACTER SP
 439-473



OXYGENASE


PCYNT_SYNP7
CARBONIC ANHYDRASE

SYNECHOCOCCUS SP
 170-200


PCYNX_ECOLI
CYNX PROTEIN

ESCHERICHIA COLI

 53-80


PCYOB_ECOLI
CYTOCHROME O UBIQUINOL

ESCHERICHIA COLI

 31-58



OXIDASE SUBUNIT 1


PCYPH_SYNP7
PEPTIDYL-PROLYL CIS-TRANS

SYNECHOCOCCUS SP
 107-141



ISOMERASE


PCYSA_ECOLI
SULFATE PERMEASE A

ESCHERICHIA COLI

 164-191



PROTEIN


PCYSB_ECOLI
CYS REGULON TRANS-

ESCHERICHIA COLI

  3-30



CRIPTIONAL ACTIVATOR


PCYSB_SALTY
CYS REGULON TRANS-

SALMONELLA TYPHIMURIUM

  3-30



CRIPTIONAL ACTIVATOR


PCYSE_ECOLI
SERINE ACETYL-

ESCHERICHIA COLI

 164-191



TRANSFERASE


PCYSE_SALTY
SERINE ACETYL-

SALMONELLA TYPHIMURIUM

 164-191



TRANSFERASE


PCYSG_ECOLI
SIROHEM SYNTHASE

ESCHERICHIA COLI

 405-432


PCYSG_SALTY
SIROHEM SYNTHASE

SALMONELLA TYPHIMURIUM

 405-432


PCYSN_ECOLI
SULFATE ADENYLATE

ESCHERICHIA COLI

 64-91



TRANSFERASE SUBUNIT 1


PCYSW_ECOLI
SULFATE PERMEASE W

ESCHERICHIA COLI

 201-228



PROTEIN


PCYSW_SYNP7
SULFATE PERMEASE W

SYNECHOCOCCUS SP
 211-238



PROTEIN


PCZCB_ALCEU
CATION EFFLUX SYSTEM

ALCALIGENES EUTROPHUS

 241-268
 283-320
 364-391



PROTEIN CZCB


PCZCD_ALCEU
CATION EFFLUX SYSTEM

ALCALIGENES EUTROPHUS

 139-169



PROTEIN CZCD


PDACB_BACSU
PENICILLIN-BINDING

BACILLUS SUBTILIS

 80-107



PROTEIN 5* PRECURSOR


PDADA_ECOLI
D-AMINO ACID DEHYDRO-

ESCHERICHIA COLI

 127-154



GENASE


PDAGA_ALTHA
NA(+)-LINKED D-ALANINE

ALTEROMONAS HALOPLANKTIS

 332-373



GLYCINE PERMEASE


PDAMX_ECOLI
DAMX PROTEIN

ESCHERICHIA COLI

 68-95
 349-380


PDAPA_ECOLI
DIHYDRODIPICOLINATE

ESCHERICHIA COLI

 27-54
 157-184



SYNTHASE


PDAT1_BACSU
DNA-PROTEIN-CYSTEINE

BACILLUS SUBTILIS

 13-47



METHYLTRANSFERASE


PDBHA_ECOLI
DNA-BINDING PROTEIN HU-

ESCHERICHIA COLI

 12-39



ALPHA


PDBH_CLOPA
DNA-BINDING PROTEIN HU

CLOSTRIDIUM PASTEURIANUM

 12-53


PDCAM_ECOLI
DECARBOXYLASE

ESCHERICHIA COLI

 146-173



PROENZYME


PDCDA_CORGL
DIAMINOPIMELATE

CORYNEBACTERIUM GLUTMICUM

 134-161



DECARBOXYLASE


PDCDA_PSEAE
DIAMINOPIMELATE

PSEUDOMONAS AERUGINOSA

 57-84



DECARBOXYLASE


PDCEB_ECOLI
GLUTAMATE DECARBOXY-

ESCHERICHIA COLI

  4-31



LASE BETA


PDCHS_ENTAE
HISTIDINE DECARBOXYLASE

ENTEROBACTER AEROGENES

 111-138


PDCHS_KLEPL
HISTIDINE DECARBOXYLASE

KLEBSIELLA PLANTICOLA

 111-138


PDCHS_MORMO
HISTIDINE DECARBOXYLASE

MORGANELA MORGANII

 111-138


PDCID_BACSU
DIPEPTIDE TRANSPORT

BACILLUS SUBTILIS

 188-222



PROTEIN DCIAD


PDCLY_HAFAL
LYSINE DECARBOXYLASE

HAFNIA ALVEI

 305-332


PDCOA_KLEPN
OXALOACETATE DECARB-

KLEBSIELLA PNEUMONIAE

 261-288
 342-369



OXYLASE ALPHA CHAIN


PDCOA_SALTY
OXALOACETATE DECARB-

SALMONELLA TYPHIMURIUM

 261-288
 342-369



OXYLASE ALPHA CHAIN


PDCOB_SALTY
OXALOACETATE DECARB-

SALMONELLA TYPHIMURIUM

 299-326



OXYLASE BETA CHAIN


PDCTB_RHILE
TRANSPORT SENSOR

RHIZOBIUM LEGUMINOSARUM

 377-411



PROTEIN DCTB


PDCTB_RHIME
TRANSPORT SENSOR

RHIZOBIUM MELILOTI

 511-538



PROTEIN DCTB


PDEAD_ECOLI
ATP-DEPENDENT RNA

ESCHERICHIA COLI

 268-295
 518-545



HELICASE DEAD


PDEAD_KLEPN
ATP-DEPENDENT RNA

KLEBSIELLA PNEUMONIAE

 267-294
 519-546



HELICASE DEAD


PDEDA_ECOLI
DEDA PROTEIN

ESCHERICHIA COLI

 106-133


PDEGS_BACSU
SENSOR PROTEIN DEGS

BACILLUS SUBTILIS

 31-70
 75-159
 292-327


PDEH2_MORSP
HALOACETATE DEHALO-

MORAXELLA SP
 114-141



GENASE H-2


PDEOC_ECOLI
DEOXYRIBOSE-PHOSPHATE

ESCHERICHIA COLI

 134-161



ALDOLASE


PDHAL_PSEOL
ALDEHYDE DEHYDRO-

PSEUDOMONAS OLEOVORANS

  6-33



GENASE


PDHAS_BACSU
ASPARTATE-SEMIALDEHYDE

BACILLUS SUBTILIS

 150-184



DEHYDROGENASE


PDHAS_CORGL
ASPARTATE-SEMIALDEHYDE

CORYNEBACTERIUM GLUTMICUM

 43-70
 312-339



DEHYDROGENASE


PDHAS_ECOLI
ASPARTATE-SEMIALDEHYDE

ESCHERICHIA COLI

 229-256



DEHYDROGENASE


PDHAS_VIBCH
ASPARTATE-SEMIALDEHYDE

VIBRIO CHOLERAE

 309-336



DEHYDROGENASE


PDHA_BACSH
ALANINE DEHYDROGENASE

BACILLUS SPHAERICUS

 149-176


PDHA_BACST
ALANINE DEHYDROGENASE

BACILLUS STEAROTHERMOPHILUS

 94-121


PDHE2_CLODI
NAD-SPECIFIC GLUTAMATE

CLOSTRIDIUM DIFFICILE

 116-143



DEHYDROGENASE


PDHE2_PEPAS
D-SPECIFIC GLUTAMATE

PEPTOSTREPTOCOCCUS

 247-274
 345-380



DEHYDROGENASE

ASACCHAROLYTICUS



PDHE3_SULSO
GLUTAMATE DEHYDRO-

SULFOLOBUS SOLFATARICUS

  2-36



GENASE


PDHE4_CORGL
NADP-SPECIFIC GLUTAMATE

CORYNEBACTERIUM GLUTMICUM

 188-215
 229-256



DEHYDROGENASE


PDHGA_ACICA
GLUCOSE DEHYDROGENASE-

ACINETOBACTER CALCOACETICUS

 10-59
 190-217



A


PDHGB_BACME
GLUCOSE 1-DEHYDRO-

BACILLUS MEGATERIUM

 27-57



GENASE B


PDHG_ECOLI
GLUCOSE DEHYDROGENASE

ESCHERICHIA COLI

 436-463


PDHK1_STRVN
KETOACYL REDUCASE 1

STREPTOMYCES VIOLACEORUBER

 168-195


PDHLE_BACST
LEUCINE DEHYDROGENASE

BACILLUS STEAROTHERMOPHILUS

 192-219


PDHLO_AGRT4
D-LYSOPINE DEHYDRO-

AGROBACTERIUM TUMEFACIENS

 317-344



GENASE


PDHM1_METEX
METHANOL DEHYDRO-

METHYLOBACTERIUM

 153-187
 190-224



GENASE SUBUNIT 1 PREC

EXTORQUENS



PDHM1_METOR
METHANOL DEHYDRO-

METHYLOBACTERIUM

 153-187
 190-224



GENASE SUBUNIT 1 PREC

ORGANOPHILUM



PDHM1_PARDE
METHANOL DEHYDRO-

PARACOCCUS DENITRIFICANS

 195-222



GENASE SUBUNIT 1 PREC


PDHNA_BACSP
NADH DEHYDROGENASE

BACILLUS SP
 284-314


PDHNA_ECOLI
NADH DEHYDROGENASE

ESCHERICHIA COLI

 180-214


PDHOM_BACSU
HOMOSERINE DEHYDRO-

BACILLUS SUBTILIS

 73-107
 406-433



GENASE


PDHOM_CORGL
HOMOSERINE DEHYDRO-

CORYNEBACTERIUM GLUTMICUM

 105-132



GENASE


PDHPH_BACSH
PHENYLALANINE DEHYDRO-

BACILLUS SPHAERICUS

 212-239



GENASE


PDHSA_ECOLI
SUCC DEHYDROGENASE

ESCHERICHIA COLI

 482-512



FLAVOPROTEIN SUBUNIT


PDHSS_ANACY
SOLUBLE HYDROGENASE 42

ANABAENA CYLINDRICA

 86-113
 130-168



KD SUBUNIT


PDHSS_SYNP1
SOLUBLE HYDROGENASE,

SYNECHOCOCCUS SP
 133-160



SMALL SUBUNIT


PDHTM_METME
TRIMETHYLAMINE

METHYLOTROPHUS METHYLO-
 439-466



DEHYDROGENASE

PHILUS



PDING_ECOLI
PROBABLE ATP-DEPENDENT

ESCHERICHIA COLI

 584-611



HELICASE DING


PDIVB_BACSU
DIVISION INITIATION

BACILLUS SUBTILIS

 54-82
 144-141



PROTEIN


PDLD3_PSEPU
DIHYDROLIPOAMIDE

PSEUDOMONAS PUTIDA

 93-120



DEHYDROGENASE


PDLDH_AZOVI
LIPOAMIDE DEHYDRO-

AZOTOBACTER VINELANDII

 18-45
 224-276



GENASE COMP (E3)


PDLDH_BACST
LIPOAMIDE DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

 82-124



GENASE COMP (E3)


PDLDH_BACSU
LIPOAMIDE DEHYDRO-

BACILLUS SUBTILIS

 82-109



GENASE COMP (E3)


PDLDH_ECOLI
DIHYDROLIPOAMIDE

ESCHERICHIA COLI

 108-135



DEHYDROGENASE


PDLDH_PSEFL
DIHYDROLIPOAMIDE

PSEUDOMONAS FLUORESCENS

 124-151
 223-275



DEHYDROGENASE


PDMPN_PSEPU
PHENOL HYDROXYLASE P3

PSEUDOMONAS PUTIDA

 63-90



PROTEIN


PDNA1_BACSU
DNAK PROTEIN

BACILLUS SUBTILIS

 497-524
 548-581


PDNA2_BASCU
DNAK PROTEIN

BACILLUS SUBTILIS

 456-483


PDNAA_BACSU
DNAA PROTEIN

BACILLUS SUBTILIS

 316-380


PDNAA_BORBU
DNAA PROTEIN

BORRELIA BURGDORFERI

 182-216
 248-275
 341-387
 436-463


PDNAA_BUCAP
DNAA PROTEIN

BUCHNERA APHIDICOLA

 73-100
 111-138
 353-380


PDNAA_ECOLI
DNAA PROTEIN

ESCHERICHIA COLI

 366-400


PDNAA_MICLU
DNAA PROTEIN

MICROCOCCUS LUTEUS

 385-415


PDNAA_MYCCA
DNAA PROTEIN

MYCOPLASMA CAPRICOLUM

  8-56
 75-112
 274-310
 350-389


PDNAA_PROMI
DNAA PROTEIN

PROTEUS MIRABILIS

 365-399


PDNAA_PSEPU
DNAA PROTEIN

PSEUDOMONAS PUTIDA

 398-439


PDNAA_SPICI
DNAA PROTEIN

SPIROPLASMA CITRI

 45-72
 76-110
 145-180


PDNAB_CHLTR
DNAB-LIKE PROTEIN

CHLAMYDIA TRACHOMATIS

 312-353


PDNAB_ECOLI
DNAP PROTEIN

ESCHERICHIA COLI

 82-109


PDNAB_SALTY
DNAP PROTEIN

SALMONELLA TYPHIMURIUM

 82-109


PDNAC_ECOLI
DNAC PROTEIN

ESCHERICHIA COLI

 146-190


PDNAK_BACME
DNAK PROTEIN

BACILLUS MEGATERIUM

 497-524
 548-581


PKNAK_BORBU
DNAK PROTEIN

BORRELIA BURGDORFERI

 512-594


PDNAK_BRUOV
DNAK PROTEIN

BRUCELLA OVIS

 248-275
 512-546


PDNAK_CAUCR
DNAK PROTEIN

CAULOBACTER CRESCENTUS

 561-588


PDNAK_CLOAB
DNAK PROTEIN

CLOSTRIDIUM ACETOBUTYLICUM

 499-526


PDNAK_CLOPE
DNAK PROTEIN

CLOSTRIDIUM PERFRINGENS

 496-527


PDNAK_METMA
DNAK PROTEIN

METHANOSARCINA MAZEI

 523-550


PDNAK_MYCTU
DNAK PROTEIN

MYCOBACTERIUM TUBERCULOSIS

 502-529


PDNAK_STRCO
DNAK PROTEIN

STREPTOMYCES COELICOLOR

 45-72
 533-572


PDNIR_ECOLI
REGULATORY PROTEIN DNIR

ESCHERICHIA COLI

 114-141


PDNLI_ZYMMO
DNA LIGASE

ZYMOMONAS MOBILIS

 658-712


PDNRJ_STRPE
TRANSDUCTION PROTEIN

STREPTOMYCES PEUCETIUS

 24-51



DNRJ


PDOCK_SULSO
PROBABLE SIGNAL RECOG-

SULFOLOBUS SOLFATARICUS

 104-172



NITION PARTICLE PROTE


PDP3A_BACSU
DNA POLYMERASE III,

BACILLUS SUBTILIS

 58-85
 417-444
1382-1416



ALPHA CHAIN


PDP3A_ECOLI
DNA POLYMERASE III,

ESCHERICHIA COLI

 77-104



ALPHA CHAIN


PDP3A_SACER
DNA POLYMERASE III,

SACCHAROPOLYSPORA ERYTHRAEA

 230-257



ALPHA CHAIN


PDP3A_SALTY
DNA POLYMERASE III,

SALMONELLA TYPHIMURIUM

 77-104



ALPHA CHAIN


PDP3B_BACSU
DNA POLYMERASE III, BETA

BACILLUS SUBTILIS

 212-239



CHAIN


PDP3B_BORBU
DNA POLYMERASE III, BETA

BORRELIA BURGDORFERI

 266-313



CHAIN


PDP3B_BUCAP
DNA POLYMERASE III, BETA

BUCHNERA APHIDICOLA

 31-62
 308-359



CHAIN


PDP3B_MICLU
DNA POLYMERASE III, BETA

MICROCOCCUS LUTEUS

 191-218



CHAIN


PDP3B_MYCCA
DNA POLYMERASE III, BETA

MYCOPLASMA CAPRICOLUM

 36-70



CHAIN


PDP3B_PSEPU
DNA POLYMERASE III, BETA

PSEUDOMONAS PUTIDA

 30-60



CHAIN


PDP3B_SPICI
DNA POLYMERASE III, BETA

SPIROPLASMA CITRI

 78-112
 129-177
 273-310



CHAIN


PDP3X_BACSU
DNA POLYMERASE III SUB-

BACILLUS SUBTILIS

 231-272



UNITS AND GAMMA AND TAU


PDPC2_ECOLI
DNA PRIMASE TRAC-2

ESCHERICHIA COLI

 691-743


PDPC4_ECOLI
DNA PRIMASE TRAC-4

ESCHERICHIA COLI

 401-448


PDPND_STRPN
DPND PROTEIN

STREPTOCOCCUS PNEUMONIAE

 79-120


PDPO1_BACCA
DNA POLYMERASE I

BACILLUS CALDOTENOX

 208-235


PDPO1_STRPN
DNA POLYMERASE I

STREPTOCOCCUS PNEUMONIAE

 198-225
 398-425
 571-598
 645-672


PDPO1_THEAQ
DNA POLYMERASE

THERMUS AQUATICUS

 196-223
 602-629


PDPO1_THEFL
DNA POLYMERASE

THERMUS AQUATICUS

 597-628


PDPO2_ECOLI
DNA POLYMERASE II

ESCHERICHIA COLI

 569-596


PDPOL_PYRFU
DNA POLYMERASE

PYROCOCCUS FURIOSUS

 746-773


PDPOL_SULSO
DNA POLYMERASE

SULFOLOBUS SOLFATARICUS

 379-406
 436-463
 625-659
 747-774


PDPOL_THELI
DNA POLYMERASE

THERMOCOCCUS LITORALIS

 332-370
 551-589
 892-926
1004-1031
1153-1194


PDPP_LACLA
DIPEPTIDYL PEPTIDASE IV

LACTOCOCCUS LACTIS

 716-753


PDPP_LACLC
DIPEPTIDYL PEPTIDASE IV

LACTOCOCCUS LACTIS

 716-753


PDPS_ECOLI
DNA PROTECTION DURING

ESCHERICHIA COLI

  4-45



STARVATION PROTEIN


PDRN1_STREQ
DEOXYRIBONUCLEASE

STREPTOCOCCUS EQUISIMILIS

 33-60
 291-318



PRECURSOR


PDRRA_STRPE
DAUNORUBICIN RESISTANCE

STREPTOMYCES PEUCETIUS

 286-313



ATP-BINDING PROTEI


PDYRA_STAAU
DIHYDROFOLATE

STAPHYLOCOCCUS AUREUS

 62-89



REDUCTASE TYPE I


PE13B_BACCI
GLUCAN ENDO-1,3-BETA-

BACILLUS CIRCULANS

 134-161
 305-339
 424-451



GLUCOSIDASE A1 PREC


PEAE_ECOLI
ATTACHING AND EFFACING

ESCHERICHIA COLI

 66-100
 158-185
 525-552
 691-725
 802-836
 871-905



PROTEIN


PEBGR_ECOLI
EBG OPERON REPRESSOR

ESCHERICHIA COLI

 151-178



PROTEIN


PEBR_STAAU
ETHIDIUM BROMIDE RESIS-

STAPHYLOCOCCUS AUREUS

 68-98



TANCE PROTEIN


PECHH_RHOCA
ENOYL-COA HYDRATASE

RHODOBACTER CAPSULATUS

 222-249



HOMOLOG


PECPD_ECOLI
CHAPERONE PROTEIN ECPD

ESCHERICHIA COLI

 20-47



PRECURSOR


PEDD_ZYMMO
PHOSPHOGLUCONATE

ZYMOMONAS MOBILIS

 12-39



DEHYDRATASE


PEDIN_STAAU
EPIDERMAL CELL DIF INH

STAPHYLOCOCCUS AUREUS

 52-79
 119-146



PRECURSOR


PEF2_DESMO
ELONGATION FACTOR 2

DESULFUROCOCCUS MOBILIS

 427-461


PEF2_HALHA
ELONGATION FACTOR 2

HALOBACTERIUM HALOBIUM

 186-213


PEF2_METVA
ELONGATION FACTOR 2

METHANOCOCCUS VANNIELII

 409-436


PEF2_SULAC
ELONGATION FACTOR 2

SULFOLOBUS ACIDOCALDARIUS

 36-63
 145-180


PEF2_THEAC
ELONGATION FACTOR 2

THERMOPLASMA ACIDOPHILUM

 13-40
 49-76
 220-247


PEFG_ANANI
ELONGATION FACTOR G

ANACYSTIS NIDULANS

 332-359


PEFG_ECOLI
ELONGATION FACTOR G

ESCHERICHIA COLI

 234-261


PEFG_MYCLE
ELONGATION FACTOR G

MYCOBACTERIUM LEPRAE

 211-259
 330-357


PEFG_SALTY
ELONGATION FACTOR G

SALMONELLA TYPHIMURIUM

 234-261


PEFG_SPIPL
ELONGATION FACTOR G

SPIRULINA PLATENSIS

 334-374
 481-511


PEFG_SYNY3
ELONGATION FACTOR G

SYNECHOCYSTIS SP
 14-41


PEFT1_STRRA
ELONGATION FACTOR TU1

STREPTOMYCES RAMOCISSIMUS

 221-258


PEFT2_STRRA
ELONGATION FACTOR TU2

STREPTOMYCES RAMOCISSIMUS

 221-258


PEFT3_STRRA
ELONGATION FACTOR TU3

STREPTOMYCES RAMOCISSIMUS

 228-255


PEFTS_ECOLI
ELONGATION FACTOR EF-TS

ESCHERICHIA COLI

 101-135


PEFTS_SPICI
ELONGATION FACTOR EF-TS

SPIROPLASMA CITRI

 27-54
 134-161


PEFTU_BACFR
ELONGATION FACTOR TU

BACTEROIDES FRAGILIS

 18-45
 229-256


PEFTU_BACSU
ELONGATION FACTOR TU

BACILLUS SUBTILIS

 11-45
 230-257


PEFTU_BURCE
ELONGATION FACTOR TU

BURKHOLDERIA CEPACIA

 26-53


PEFTU_CHLTR
ELONGATION FACTOR TU

CHLAMYDIA TRACHOMATIS

 218-245


PEFTU_DEISP
ELONGATION FACTOR TU

DEINONEMA SP
 230-257


PEFTU_FLESI
ELONGATION FACTOR TU

FLEXISTIPES SINUSARABICI

 221-248


PEFTU_HALMA
ELONGATION FACTOR TU

HALOARCULA MARISMORTUI

  4-31


PEFTU_MICLU
ELONGATION FACTOR TU

MICROCOCCUS LUTEUS

 221-248


PEFTU_MYCHO
ELONGATION FACTOR TU

MYCOPLASMA HOMINIS

 222-249


PEFTU_MYCLE
ELONGATION FACTOR TU

MYCOBACTERIUM LEPRAE

 220-257


PEFTU_MYCTU
ELONGATION FACTOR TU

MYCOBACTERIUM TUBERCULOSIS

 220-247


PEFTU_SHEPU
ELONGATION FACTOR TU

SHEWANELLA PUTREFACIENS

 26-53


PEFTU_STROR
ELONGATION FACTOR TU

STREPTOCOCCUS ORALIS

 232-259


PELAS_PSEAE
PSEUDOLYSIN PRECURSOR

PSEUDOMONAS AERUGINOSA

 141-168


PELT1_ECOLI
T-LABILE ENTEROTOXIN A

ESCHERICHIA COLI

 78-105



CHAIN PRECURSOR


PELT3_ECOLI
T-LABILE ENTEROTOXIN A

ESCHERICHIA COLI

 79-106



CHAIN PRECURSOR


PELTB_CLOPE
T-LABILE ENTEROTOXIN B

CLOSTRIDIUM PERFRINGENS

 228-269



CHAIN PRECURSOR


PENTD_ECOLI
ENTEROBACTIN SYNTHETASE

ESCHERICHIA COLI

 154-188



COMPONENT D


PENVM_SALTY
ENVM PROTEIN

SALMONELLA TYPHIMURIUM

 34-61


PEPIB_STAEP
117 KD MEMBRANE ASSOCI-

STAPHYLOCOCCUS EPIDERMIDIS

 51-80
 125-229
 290-325
 387-421
 857-889



ATED PROTEIN


PEPIC_STAEP
EPIDERMIN BIOSYNTHESIS

STAPHYLOCOCCUS EPIDERMIDIS

 411-447



PROTEIN EPIC


PEPIP_STAEP
SERINE PROTEASE EPIP

STAPHYLOCOCCUS EPIDERMIDIS

  7-68
 297-324



PRECURSOR


PEPIY_STAEP
HYPOTHETICAL 16.7 KD

STAPHYLOCOCCUS EPIDERMIDIS

 70-101



PROTEIN IN EPIA 5′ REGION


PEPIZ_STAEP
HYPOTHETICAL PROTEIN IN

STAPHYLOCOCCUS EPIDERMIDIS

 42-100



EPIA 5′ REGION


PERA_ECOLI
GTP-BINDING ERA PROTEIN

ESCHERICHIA COLI

 18-45


PERBS_SACER
SENSORY TRANSDUCTION

SACCHAROPOLYSPORA ERYTHRAEA

 209-243



PROTEIN ERYC1


PEREA_ECOLI
ERYTHROMYCIN ESTERASE

ESCHERICHIA COLI

 37-64
 143-170



TYPE 1


PERY3_SACER
ERYTHRONOLIDE SYNTHASE,

SACCHAROPOLYSPORA ERYTHRAEA

  9-36
 967-994
1117-1144



MODULES 5 AND 6


PESTA_STRSC
ESTERASE PRECURSOR

STREPTOMYCES SCABIES

 128-155


PESTE_PSEFL
ARYLESTERASE

PSEUDOMONAS FLUORESCENS

 162-189


PETC1_STAAU
ENTEROTOXIN TYPE C-1

STAPHYLOCOCCUS AUREUS

 76-117
 155-206



PRECURSOR


PETC2_STAAU
ENTEROTOXIN TYPE C-2

STAPHYLOCOCCUS AUREUS

 76-117
 155-206



PRECURSOR


PETC3_STAAU
ENTEROTOXIN TYPE C-3

STAPHYLOCOCCUS AUREUS

 76-117
 155-206



PRECURSOR


PETXA_STAAU
ENTEROTOXIN TYPE A

STAPHYLOCOCCUS AUREUS

 26-69
 165-192



PRECURSOR


PETXB_CLOPE
EPSILON-TOXIN, TYPE B

CLOSTRIDIUM PERFRINGENS

 209-236



PRECURSOR


PETXB_STAAU
ENTEROTOXIN TYPE B

STAPHYLOCOCCUS AUREUS

 64-101
 173-207



PRECURSOR


PETXD_STAAU
ENTEROTOXIN TYPE D

STAPHYLOCOCCUS AUREUS

 153-200



PRECURSOR


PETXE_STAAU
ENTEROTOXIN TYPE E

STAPHYLOCOCCUS AUREUS

 26-69
 88-115



PRECURSOR


PEUTC_SALTY
ETHANOLAMINE AMMONIA-

SALMONELLA TYPHIMURIUM

 116-150



LYASE LIGHT CHAIN


PEVGA_ECOLI
PUTATIVE TRANSCRIPTION

ESCHERICHIA COLI

 62-89



REG EVGA


PEVGS_ECOLI
PUTATIVE SENSOR PROTEIN

ESCHERICHIA COLI

 45-79
 249-276
 431-458
 526-553
 829-856



EVGS


PEX5B_ECOLI
EXODEOXYRIBONUCLEASE V

ESCHERICHIA COLI

 226-253


PEXBB_ECOLI
BIOPOLYMER TRANSPORT

ESCHERICHIA COLI

 80-107



EXBB PROTEIN


PEXOA_RHIME
SUCCINOGLYCAN BIO-

RHIZOBIUM MELILOTI

 180-207



SYNTHESIS PROTEIN EXOA


PEXOA_STRPN
EXODEOXYRIBONUCLEASE

STREPTOCOCCUS PNEUMONIAE

 218-254


PEXOF_RHIME
EXOF PROTEIN

RHIZOBIUM MELILOTI

 236-270
 327-361


PEXOH_RHIME
SUCCINOGLYCAN BIO-

RHIZOBIUM MELILOTI

 252-279



SYNTHESIS PROTEIN EXOH


PEXOP_RHIME
SUCCINOGLYCAN BIO-

RHIZOBIUM MELILOTI

 211-242
 272-299
 350-391



SYNTHESIS PROTEIN EXOP


PFADB_ECOLI
FATTY OXIDATION COMPLEX

ESCHERICHIA COLI

 36-63
 177-204



ALPHA SUBUNIT


PFADL_ECOLI
FATTY ACID TRANSPORT

ESCHERICHIA COLI

 220-247



PROTEIN PRECURSOR


PFAED_ECOLI
OUTER MEMBRANE PROTEIN

ESCHERICHIA COLI

 223-257
 421-453
 507-541



FAED PRECURSOR


PFAEF_ECOLI
K88 MINOR FIMBRIAL SUB-

ESCHERICHIA COLI

 18-48



UNIT PRECURSOR


PFAND_ECOLI
FAND PROTEIN PRECURSOR

ESCHERICHIA COLI

 160-194
 386-423
 596-623
 730-757


PFANE_ECOLI
CHAPERONE PROTEIN FANE

ESCHERICHIA COLI

 22-58



PRECURSOR


PFANG_ECOLI
FANG PROTEIN PRECURSOR

ESCHERICHIA COLI

 104-131


PFANH_ECOLI
FANH PROTEIN PRECURSOR

ESCHERICHIA COLI

 83-141


PFAOB_PSERF
FATTY OXIDATION COMPLEX

PSEUDOMONAS FRAGI

  8-42
 295-322



ALPHA SUBUNIT


PFDHD_WOLSU
FDHD PROTEIN

WOLINELLA SUCCINOGENES

 64-98


PFDHF_ECOLI
FORMATE DEHYDROGENASE

ESCHERICHIA COLI

 613-640


PFDH_PSESR
FORMATE DEHYDROGENASE

PSEUDOMONAS SP
 49-76
 366-393


PFDNG_ECOLI
FORMATE DEHYDROGENASE

ESCHERICHIA COLI

 288-315
 323-350
 696-730


PFECA_ECOLI
TRANSPORT PROTEIN FECA

ESCHERICHIA COLI

 531-561



PRECURSOR


PFECC_ECOLI
TRANSPORT PROTEIN 1,

ESCHERICHIA COLI

 210-237



CYTOSOLIC


PFECI_ECOLI
FECI PROTEIN

ESCHERICHIA COLI

 131-158


PFEMB_STAAU
POSSIBLE PROTEIN FEMB

STAPHYLOCOCCUS AUREUS

 22-56


PFENR_SYNP2
FERREDOXIN-NADP

SYNECHOCOCCUS SP
  4-31



REDUCTASE


PFEPC_ECOLI
FERRIC ENTEROBACTIN

ESCHERICHIA COLI

 176-203



TRANSPORT PROTEIN FEPC


PFEPE_ECOLI
FERRIC ENTEROBACTIN

ESCHERICHIA COLI

 182-234
 281-308



TRANSPORT PROTEIN FEPE


PFEPG_ECOLI
FERRIC ENTEROBACTIN

ESCHERICHIA COLI

 128-155



TRANSPORT PROTEIN FEPG


PFERH_ANASP
FERREDOXIN, HETEROCYST

ANABAENA SP
  2-29


PFERX_ANASP
FERRODOXIN-LIKE PROTEIN

ANABAENA SP
 67-94



IN NIF REGION


PFHAB_BORPE
FILAMENTOUS HEMAG-

BORDETELLA PERTUSSIS

1128-1158
1359-1386
2063-2114
2841-2868
3051-3085
3167-3194



GLUTININ


PFHAC_BORPE
HAEMOLYSIN-LIKE

BORDETELLA PERTUSSIS

 342-369



PROTEIN FHAC PRECURSOR


PFHLA_ECOLI
FORMATE HYDROGENLYASE

ESCHERICHIA COLI

 36-63
 350-384
 401-428



TRANSACTIVATOR


PFHUA_ECOLI
FERRICHROME-IRON

ESCHERICHIA COLI

 458-485



RECEPTOR PRECURSOR


PFHUB_ECOLI
PROTEIN FHUB PRECURSOR

ESCHERICHIA COLI

 227-254


PFHUE_ECOLI
OUTER-MEMBRANE

ESCHERICHIA COLI

 587-614



RECEPTOR


PFIB_SPICI
FIBRIL PROTEIN

SPIROPLASMA CITRI

 161-195
 326-367


PFIC_ECOLI
CELL FILAMENTATION

ESCHERICHIA COLI

 151-178



PROTEIN FIC


PFIC_SALTY
CELL FILAMENTATION

SALMONELLA TYPHIMURIUM

 151-178



PROTEIN FIC


PFIMC_BORPE
OUTER MEMBRANE PROTEIN

BORDETELLA PERTUSSIS

 208-235
 540-567
 618-645



FIMC PRECURSOR


PFIMC_ECOLI
CHAPERONE PROTEIN FIMC

ESCHERICHIA COLI

 51-78



PRECURSOR


PFIMD_ECOLI
FIMD PROTEIN PRECURSOR

ESCHERICHIA COLI

 222-253
 458-485
 534-561
 563-590


PFIME_ECOLI
TYPE 1 FIMBRIAE REGULA-

ESCHERICHIA COLI

 165-192



TORY PROTEIN FIME


PFIMY_SALTY
FIMBRIAE Y PROTEIN

SALMONELLA TYPHIMURIUM

 49-76


PFIMZ_ECOLI
FIMBRIAE Z PROTEIN

ESCHERICHIA COLI

 42-69
 162-192
 196-230


PFIMZ_SALTY
FIMBRIAE Z PROTEIN

SALMONELLA TYPHIMURIUM

 175-209


PFINQ_ECOLI
FINQ PROTEIN

ESCHERICHIA COLI

 145-172


PFIRA_RICRI
FIRA PROTEIN

RICKETTSIA RICKETTSII

 162-189


PFIXC_AZOCA
FIXC PROTEIN

AZORHIZOBIUM CAULINODANS

 129-156


PFIXL_AZOCA
SENSOR PROTEIN FIXL

AZORHIZOBIUM CAULINODANS

 247-274


PFIXL_BRAJA
SENSOR PROTEIN FIXL

BRADYRHIZOBIUM JAPONICUM

 27-54
 253-280


PFLA1_BORBU
FLAGELLAR FILAMENT 41 KD

BORRELIA BURGDORFERI

  8-35
 271-298



CORE PROTEIN


PFLA1_HALHA
FLAGELLIN A1 PRECURSOR

HALOBACTERIUM HALOBIUM

 63-92
 157-184


PFLA1_METVO
FLAGELLIN B1 PRECURSOR

METHANOCOCCUS VOLTAE

 28-73
 133-160


PFLA2_METVO
FLAGELLIN B2 PRECURSOR

METHANOCOCCUS VOLTAE

 28-66


PFLA3_HALHA
FLAGELLIN B1 PRECURSOR

HALOBACTERIUM HALOBIUM

 36-63


PFLA3_METVO
FLAGELLIN B3 PRECURSOR

METHANOCOCCUS VOLTAE

 35-76


PFLA4_HALHA
FLAGELLIN B2 PRECURSOR

HALOBACTERIUM HALOBIUM

 36-90
 157-184


PFLA5_HALHA
FLAGELLIN B3 PRECURSOR

HALOBACTERIUM HALOBIUM

 36-63
 154-181


PFLA6_BACSU
FLAA LOCUS 22.9 KD

BACILLUS SUBTILIS

 73-149
 155-186



PROTEIN


PFLAA_COMCO
FLAGELLIN A

CAMPYLOBACTER COLI

 15-42
 144-191
 497-535


PFLAA_CAMJE
FLAGELLIN A

CAMPYLOBACTER JEJUNI

 220-266
 310-337
 500-538


PFLAA_METVO
FLAGELLIN A PRECURSOR

METHANOCOCCUS VOLTAE

 28-62


PFLAA_PSEAE
FLAGELLIN

PSEUDOMONAS AERUGINOSA

  3-41
 51-88
 97-124


PFLAA_RHIME
FLAGELLIN

RHIZOBIUM MELILOTI

 181-219
 228-265
 360-391


PFLAA_SPIAU
FLAGELLAR FILAMENT

SPIROCHAETA AURANTIA

 162-189



PROTEIN PRECURSOR


PFLAA_TREHY
FLAGELLAR FILAMENT

TREPONEMA HYODYSENTERIAE

 55-89
 219-285



PROTEIN PRECURSOR


PFLAA_TREPA
FLAGELLAR FILAMENT

TREPONEMA PALLIDUM

 243-270



OUTER LAYER PROTEIN


PFLAB_CAMCO
FLAGELLIN B

CAMPYLOBACTER COLI

 144-191
 497-535


PFLAB_CAMJE
FLAGELLIN B

CAMPYLOBACTER JEJUNI

 220-266
 310-337
 500-538


PFLAB_RHIME
FLAGELLIN

RHIZOBIUM MELILOTI

 86-113
 177-219
 228-255
 360-391


PFLAV_CLOMP
FLAVODOXIN

CLOSTRIDIUM MP
 18-52


PFLAY_CAUCR
REGULATORY PROTEIN FLAY

CAULOBACTER CRESCENTUS

 291-318
 551-578


PFLA_BACSU
FLAGELLIN

BACILLUS SUBTILIS

 102-129
 228-255


PFLGG_BACSU
FLAGELLAR BASAL-BODY

BACILLUS SUBTILIS

 62-89



ROD PROTEIN FLGG


PFLGK_SALTY
FLAGELLAR HOOK-

SALMONELLA TYPHIMURIUM

 12-50
 333-360
 456-540



ASSOCIATED PROTEIN 1


PFLGL_ECOLI
FLAGELLAR HOOK-

ESCHERICHIA COLI

 61-105
 229-266



ASSOCIATED PROTEIN 3


PFLGL_SALTY
FLAGELLAR HOOK-

SALMONELLA TYPHIMURIUM

 61-105
 229-266



ASSOCIATED PROTEIN 3


PFLHD_ECOLI
FLAGELLAR TRANSCRIP-

ESCHERICHIA COLI

  6-33



TIONAL ACTIVATOR FLHD


PFLIA_PSEAE
FLAGELLAR OPERON RNA

PSEUDOMONAS AERUGINOSA

 198-232



POL SIGMA FACTOR


PFLIC_ECOLI
FLAGELLIN

ESCHERICHIA COLI

  3-41
 186-213
 295-329
 431-466


PFLIC_SALCH
FLAGELLIN

SALMONELLA CHOLERAE-SUIS
  5-41
 54-125
 136-198


PFLIC_SALMU
FLAGELLIN

SALMONELLA MUENCHEN

  5-41
 54-88
 136-177
 232-259
 272-299
 376-403


PFLIC_SALPA
FLAGELLIN

SALMONELLA PARATYPHI-A
  5-41
 54-125
 136-184


PFLIC_SALRU
FLAGELLIN

SALMONELLA RUBISLAW

  5-41
 54-125
 136-196


PFLIC_SALTY
FLAGELLIN

SALMONELLA TYPHIMURIUM

  5-41
 54-125
 136-200


PFLIC_SERMA
FLAGELLIN

SERRATIA MARCESCENS


 15-42
 55-89
 103-130
 137-164
 275-321


PFLID_ECOLI
FLAGELLAR HOOK-

ESCHERICHIA COLI

 32-66
 106-133
 160-187
 216-298
 386-445



ASSOCIATED PROTEIN 2


PFLID_SALTY
FLAGELLAR HOOK-

SALMONELLA TYPHIMURIUM

 32-66
 106-133
 255-299
 407-438



ASSOCIATED PROTEIN 2


PFLIE_BACSU
FLAG HOOK-BASAL

BACILLUS SUBTILIS

  8-35



BODY PROTEIN FLIE


PFLIF_BACSU
FLAGELLAR M-RING

BACILLUS SUBTILIS

 327-361
 391-418



PROTEIN


PFLIF_CAUCR
FLAGELLAR M-RING

CAULOBACTER CRESCENTUS

 24-51
 297-324
 361-388



PROTEIN


PFLIF_SALTY
FLAGELLAR M-RING

SALMONELLA TYPHIMURIUM

 484-529



PROTEIN


PFLIG_BACSU
FLAGELLAR SWITCH

BACILLUS SUBTILIS

 35-62



PROTEIN FLIG


PFLIG_ECOLI
FLAGELLAR SWITCH

ESCHERICHIA COLI

 44-71



PROTEIN FLIG


PFLIH_BACSU
PROBABLE FLIH PROTEIN

BACILLUS SUBTILIS

 19-46
 105-132


PFLIJ_BACSU
FLAGELLAR FLIJ PROTEIN

BACILLUS SUBTILIS

  7-37


PFLIJ_SALTY
FLAGELLAR FLIJ PROTEIN

SALMONELLA TYPHIMURIUM

 75-118


PFLIK_BACSU
PROBABLE FLIK PROTEIN

BACILLUS SUBTILIS

 77-104
 117-144


PFLIL_BACSU
FLIL PROTEIN

BACILLUS SUBTILIS

 30-71
 78-105
 109-136


PFLIL_ECOLI
FLIL PROTEIN

ESCHERICHIA COLI

 105-132


PFLIL_SALTY
FLIL PROTEIN

SALMONELLA TYPHIMURIUM

 103-133


PFLIM_BACSU
FLIM PROTEIN

BACILLUS SUBTILIS

 148-175


PFLIM_ECOLI
FLIM PROTEIN

ESCHERICHIA COLI

 251-278


PFLIN_CAUCR
FLAGELLAR MOTOR SWITCH

CAULOBACTER CRESCENTUS

 56-83



PROTEIN


PFLIS_ECOLI
FLAGELLAR PROTEIN FLIS

ESCHERICHIA COLI

 59-86


PFLIT_SALTY
FLAGELLAR PROTEIN FLIT

SALMONELLA TYPHIMURIUM

  9-46
 67-106


PFM12_PSEAE
FIMBRIAL PROTEIN

PSEUDOMONAS AERUGINOSA

 30-67
 80-114



PRECURSOR


PFM1A_ECOLI
TYPE-1 FIMBRIAL PROTEIN,

ESCHERICHIA COLI

  5-32



A CHAIN PRECURSOR


PFM1C_ECOLI
TYPE-1 FIMBRIAL PROTEIN,

ESCHERICHIA COLI

 11-38



C CHAIN PRECURSOR


PFM1_ACTVI
FIMBRIAL SUBUNIT TYPE 1

ACTINOMYCES VISCOSUS

 248-282
 352-379
 417-444



PRECURSOR


PFM98_ECOLI
FIMBRIAL PROTEIN 987P

ESCHERICHIA COLI

 114-141



PRECURSOR


PFMA0_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

 110-137



PRECURSOR


PFMA1_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

 107-134



PRECURSOR


PFMA2_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

 107-134



PRECURSOR


PFMA7_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

 110-137



PRECURSOR


PFMAA_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

 123-150



PRECURSOR


PFMAF_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

 107-141



PRECURSOR


PFMAH_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

 95-122



PRECURSOR


PFMAI_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

 111-145



PRECURSOR


PFMAJ_BACNO
FIMBRIAL PROTEIN

BACTEROIDES NODOSUS

 96-123



PRECURSOR


PFMCD_PSEAE
FIMBRIAL PROTEIN

PSEUDOMONAS AERUGINOSA

 70-97



PRECURSOR


PFMDD_BACNO
POSSIBLE FIMBRIAL

BACTEROIDES NODOSUS

 106-144
 355-382



ASSEMBLY PROTEIN FIMD


PFMDH_BACNO
POSSIBLE FIMBRIAL

BACTEROIDES NODOSUS

 106-144
 355-382



ASSEMBLY PROTEIN FIMD


PFMF3_ECOLI
F17 FIMBRIAL PROTEIN

ESCHERICHIA COLI

 97-124



PRECURSOR


PFMM1_NEIME
FIMBRIAL PROTEIN

NEISSERIA MENINGITIDIS

 70-97



PRECURSOR


PFMM2_NEIGO
FIMBRIAL PROTEIN

NEISSERIA GONORRHOEAE

 66-97



PRECURSOR


PFMM_MORNO
FIMBRIAL PROTEIN

MORAXELLA NONLIQUEFACIENS

 108-146



PRECURSOR


PFMP1_PSEAE
FIMBRIAL PROTEIN

PSEUDOMONAS AERUGINOSA

 30-67
 80-114



PRECURSOR


PFMP3_PSEAE
FIMBRIAL PROTEIN

PSEUDOMONAS AERUGINOSA

 70-97



PRECURSOR


PFMS1_ECOLI
CS1 FIMBRIAL SUBUNIT A

ESCHERICHIA COLI

 60-87
 112-139



PRECURSOR


PFMS3_ECOLI
CS3 FIMBRIAL SUBUNIT A

ESCHERICHIA COLI

 49-98



PRECURSOR


PFM_HAEIN
MAJOR FIMBRIAL SUBUNIT

HAEMOPHILUS INFLUENZAE

 102-129



PRECURSOR


PFNBA_STAAU
FIBRONECTIN-BINDING

STAPHYLOCOCCUS AUREUS

 41-83
 188-215
 311-365
 431-458
 517-555
 652-686
 722-756



PROTEIN PRECURSOR


PFOLC_ECOLI
FOLYPOLYGLUTAMATE

ESCHERICHIA COLI

 125-159



SYNTHASE


PFOLC_LACCA
FOLYPOLYGLUTAMATE

LACTOBACILLUS CASEI

 129-156



SYNTHASE


PFPG_BACFI
FORMAMIDOPYRIMIDINE-

BACILLUS FIRMUS

 153-180



DNA GLYCOSYLASE


PFRDA_ECOLI
FUMARATE REDUCTASE

ESCHERICHIA COLI

 395-422



FLAVOPROTEIN SUBUNIT


PFRDA_WOLSU
FUMARATE REDUCTASE

WOLINELLA SUCCINOGENES

  8-35
 487-514



FLAVOPROTEIN SUBUNIT


PFRZE—MYXXA
GLIDING MOTILITY REGULA-

MYXOCOCCUS XANTHUS

 15-42
 478-505



TORY PROTEIN


PFTHS_CLOTH
FORMATE--TETRAHYDRO-

CLOSTRIDIUM THERMOACETUM

 163-190



FOLATE LIGASE


PFTR_METTH
FORMYLTRANSFERASE

METHANOBACTERIUM

  9-43





THERMOAUTOTROPHICU



PFTSA_BACSU
CELL DIVISION PROTEIN

BACILLUS SUBTILIS

 76-110



FTSA


PFTSA_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

 301-338
 375-418



FTSA


PFTSJ_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

  4-31



FTSJ


PFTSL_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

 63-90



FTSL


PFTSN_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

 151-188



FTSN


PFTSX_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

 278-305



FTSX


PFTSY_ECOLI
CELL DIVISION PROTEIN

ESCHERICHIA COLI

 230-260



FTSY


PFUCR_ECOLI
L-FUCOSE OPERON

ESCHERICHIA COLI

  7-45



ACTIVATOR


PFUMA_BACST
FUMARATE HYDRATASE

BACILLUS STEAROTHERMOPHILUS

 290-317



CLASS I, AEROBIC


PFUMH_BACSU
FUMARATE HYDRATASE

BACILLUS SUBTILIS

 414-445


PFUR_YERPE
FERRIC UPTAKE REGULA-

YERSINIA PESTIS

 99-130



TION PROTEIN


PG3P1_ECOLI
GLYC 3-PHOS DEHYDRO-

ESCHERICHIA COLI

 302-329



GENASE A


PG3P2_ANAVA
GLYC 3-PHOS DEHYDRO-

ANABAENA VARIABILIS

 87-114



GENASE 2


PG3P3_ANAVA
GLYC 3-PHOS DEHYDRO-

ANABAENA VARIABILIS

 162-189



GENASE 3


PG3P3_ECOLI
GLYC 3-PHOS DEHYDRO-

ESCHERICHIA COLI

 236-324



GENASE C


PG3P_BACME
GLYC 3-PHOS DEHYDRO-

BACILLUS MEGATERIUM

 49-76
 237-271



GENASE


PG3P_BACSU
GLYC 3-PHOS DEHYDRO-

BACILLUS SUBTILIS

 49-76



GENASE


PG3P_PYRWO
GLYC 3-PHOS DEHYDRO-

PYROCOCCUS WOESEI

 259-286



GENASE


PG3P_THEMA
GLYC 3-PHOS DEHYDRO-

THERMOTOGA MARITIMA

 290-328



GENASE


PG6PB_BACST
GLUCOSE-6-PHOSPHATE

BACILLUS STEAROTHERMOPHILUS

 103-143
 241-268



ISOMERASE B


PG6PD_ECOLI
GLUCOSE-6-PHOSPHATE

ESCHERICHIA COLI

 301-328



1-DEHYDROGENASE


PG6PD_ZYMMO
GLUCOSE-6-PHOSPHATE

ZYMOMONAS MOBILIS

 165-192



1-DEHYDROGENASE


PGACA_PSEFL
CYANIDE CONTROL PROTEIN

PSEUDOMONAS FLUORESCENS

 178-205


PGAL1_SALTY
GALACTOKINASE

SALMONELLA TYPHIMURIUM

 86-113


PGAL7_HAEIN
GAL-1-PHOS URIDYLYL-

HAEMOPHILUS INFLUENZAE

 124-158
 239-269



TRANSFERASE


PGAL7_LACHE
GAL-1-PHOS URIDYLYL-

LACTOBACILLUS HELVETICUS

 304-338



TRANSFERASE


PGALF_SALTY
GALACTOSE OPERON

SALMONELLA TYPHIMURIUM

 53-91



REPRESSOR


PGALR_HAEIN
GALACTOSE OPERON

HAEMOPHILUS INFLUENZAE

 182-209



REPRESSOR


PGAL_PSEFL
DE D-GALACTOSE 1-

PSEUDOMONAS FLUORESCENS

 251-278



DEHYDROGENASE


PGCH2_ECOLI
GTP CYCLOHYDROLASE II

ESCHERICHIA COLI

 78-105


PGCH2_PHOLE
GTP CYCLOHYDROLASE II

PHOTOBACTERIUM LEIOGNATHI

 197-227
 246-273


PGCSH_ECOLI
GLYCINE CLEAVAGE SYSTEM

ESCHERICHIA COLI

 10-37



H PROTEIN


PGCSP_ECOLI
GLYCINE DEHYDROGENASE

ESCHERICHIA COLI

 216-246


PGCVA_ECOLI
GLYCINE CLEAVAGE SYSTEM

ESCHERICHIA COLI

 60-94



TRANSACTIVATOR


PGENK_ECOLI
PROTEIN K

ESCHERICHIA COLI

 24-51


PGER1_BACSU
SPORE GERMINATION

BACILLUS SUBTILIS

 49-83
 182-216
 350-384



PROTEIN I


PGER3_BACSU
SPORE GERMINATION

BACILLUS SUBTILIS

 293-323



PROTEIN III PRECURSOR


PGERE_BACSU
GERMINATION PROTEIN

BACILLUS SUBTILIS

 13-40



GERE


PGGI2_STAHA
ANTIBACTERIAL PROTEIN 2

STAPHYLOCOCCUS HAEMO-
  6-33





LYTICUS



PGGI3_STAHA
ANTIBACTERIAL PROTEIN 3

STAPHYLOCOCCUS HAEMO-
  6-33





LYTICUS



PGIDA_BACSU
GLUCOSE INHIBITED

BACILLUS SUBTILIS

 396-423



DIVISION PROTEIN A


PGIDA_ECOLI
GLUCOSE INHIBITED

ESCHERICHIA COLI

 533-568



DIVISION PROTEIN A


PGIDA_PSEPU
GLUCOSE INHIBITED

PSEUDOMONAS PUTIDA

 539-566



DIVISION PROTEIN A


PGIDB_BACSU
GLUCOSE INHIBITED

BACILLUS SUBTILIS

 34-61



DIVISION PROTEIN B


PGIDB_PSEPU
GLUCOSE INHIBITED

PSEUDOMONAS PUTIDA

 25-52



DIVISION PROTEIN B


PGLCP_SYNY3
GLUCOSE TRANSPORT

SYNECHOCYSTIS SP
 288-322



PROTEIN


PGLDA_BACST
GLYCEROL DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

 20-79



GENASE


PGLGA_ECOLI
GLYCOGEN SYNTHASE

ESCHERICHIA COLI

 256-283


PGLGC_ECOLI
GLUCOSE-1-PHOSPHATE

ESCHERICHIA COLI

 114-141



ADENYLYLTRANSFERASE


PGLGC_SALTY
GLUCOSE-1-PHOSPHATE

SALMONELLA TYPHIMURIUM

 114-141



ADENYLYLTRANSFERASE


PGLMS_ECOLI
GLUC--FRUC-6-PHOSAMINO-

ESCHERICHIA COLI

 209-243



TRANSFERASE


PGLN1_METTL
GLNB-LIKE PROTEIN 1

METHANOCOCCUS

 58-85





THERMOLITHOTROPHICUS



PGLNA_ANASP
GLUTAMINE SYNTHETASE

ANABAENA SP
  8-42


PGLNA_BACSU
GLUTAMINE SYNTHETASE

BACILLUS SUBTILIS

  4-31


PGLNA_CLOAB
GLUTAMINE SYNTHETASE

CLOSTRIDIUM ACETOBUTYLICUM

 413-440


PGLNA_ECOLI
GLUTAMINE SYNTHETASE

ESCHERICHIA COLI

 144-171


PGLNA_METVO
GLUTAMINE SYNTHETASE

METHANOCOCCUS VOLTAE

 203-230


PGLNA_PROVU
GLUTAMINE SYNTHETASE

PROTEUS VOLGARIS

 142-169


PGLNA_PYRFU
GLUTAMINE SYNTHETASE

PYROCOCCUS FURIOSUS

 391-421


PGLNA_SALTY
GLUTAMINE SYNTHETASE

SALMONELLA TYPHIMURIUM

 144-171


PGLNA_STRCO
GLUTAMINE SYNTHETASE

STREPTOMYCES COELICOLOR

 186-213


PGLNB_AZOBR
NITROGEN REGULATORY

AZOSPIRILLUM BRASILENSE

 15-49



PROTEIN P-II


PGLNB_RHOCA
NITROGEN REGULATORY

RHODOBACTER CAPSULATUS

 15-49



PROTEIN P-II


PGLNB_SYNP6
NITROGEN REGULATORY

SYNECHOCOCCUS SP
 52-79



PROTEIN P-II


PGLND_ECOLI
UDP URIDYLYLTRANSFERASE

ESCHERICHIA COLI

 120-147
 151-178


PGLND_SALTY
UDP URIDYLYLTRANSFERASE

SALMONELLA TYPHIMURIUM

 151-178


PGLNE_ECOLI
ADENYLYLTRANSFERASE

ESCHERICHIA COLI

 103-130
 433-460
 763-790


PGLNH_ECOLI
GLUTAMINE-BINDING

ESCHERICHIA COLI

 126-153



PROTEIN PRECURSOR


PGLNQ_BACST
GLUTAMINE PERMEASE

BACILLUS STEAROTHERMOPHILUS

  7-34



OPERON PROTEIN GLNQ


PGLPD_BACSU
AEROBIC GLYC-3-PHOS

BACILLUS SUBTILIS

 194-230



DEHYDROGENASE


PGLPD_ECOLI
AEROBIC GLYC-3-PHOS

ESCHERICHIA COLI

 410-437



DEHYDROGENASE


PGLPF_BACSU
GLYCEROL UPTAKE FACILI-

BACILLUS SUBTILIS

 235-274



TATOR PROTEIN


PGLPK_BACSU
GLYCEROL KINASE

BACILLUS SUBTILIS

 44-93


PGLPK_ECOLI
GLYCEROL KINASE

ESCHERICHIA COLI

 56-90


PGLPR_ECOLI
GLYCEROL-3-PHOSPHATE

ESCHERICHIA COLI

  5-32



REGULON REPRESSOR


PGLPX_ECOLI
GLPX PROTEIN

ESCHERICHIA COLI

 297-324


PGLPX_SHIFL
GLPX PROTEIN

SHIGELLA FLEXNERI

 297-324


PGLRX_ECOLI
GLUTAREDOXIN

ESCHERICHIA COLI

 24-51


PGLTB_ECOLI
GLUTAMATE SYNTHASE

ESCHERICHIA COLI

 482-509


PGLTP_ECOLI
PROTON GLUTAMATE

ESCHERICHIA COLI

 319-346



SYMPORT PROTEIN


PGLVB_ECOLI
PHOSPHOTRANSFERASE

ESCHERICHIA COLI

 130-157



ENZYME TYPE-IIB


PGLYA_BRAJA
SERINE HYDROXYMETHYL-

BRADYRHIZOBIUM JAPONICUM

 29-60



TRANSFERASE


PGLYA_CAMJE
SERINE HYDROXYMETHYL-

CAMPYLOBACTER JEJUNI

 376-403



TRANSFERASE


PGLYA_HYPME
SERINE HYDROXYMETHYL-

HYPHOMICROBIUM METHYL-
 28-55



TRANSFERASE

OVORUM



PGMG7_BACSU
COMG OPERON PROTEIN 7

BACILLUS SUBTILIS

 37-67
 88-122


PGNTK_BACSU
GLUCONOKINASE

BACILLUS SUBTILIS

 238-271


PGP1D_CHLTR
VIRULENCE PROTEIN PGP1-D

CHLAMYDIA TRACHOMATIS

 312-353


PGP2D_CHLTR
VIRULENCE PROTEIN PGP2-D

CHLAMYDIA TRACHOMATIS

 97-131


PGP5D_CHLTR
VIRULENCE PROTEIN PGP5-D

CHLAMYDIA TRACHOMATIS

 25-52


PGP6D_CHLTR
VIRULENCE PROTEIN PGP6-D

CHLAMYDIA TRACHOMATIS

 63-106
 193-220


PGP7D_CHLTR
VIRULENCE PROTEIN PGP7-D

CHLAMYDIA TRACHOMATIS

 12-60


PGP8D_CHLTR
VIRULENCE PROTEIN PGP8-D

CHLAMYDIA TRACHOMATIS

 94-121


PGREA_RICPR
TRANSCRIPTION ELONGA-

RICKETTSIA PROWAZEKII

 15-49



TION FACTOR GREA


PGRPE_BACSU
GRPE-LIKE PROTEIN

BACILLUS SUBTILIS

 27-73


PGRPE_BORBU
GRPE-LIKE PROTEIN

BORRELIA BURGDORFERI

  2-79


PGRPE_CLOAB
GRPE-LIKE PROTEIN

CLOSTRIDIUM ACETOBUTYLICUM

 12-83


PGRSA_BACBR
GRAMICIDIN S SYNTHETASE

BACILLUS BREVIS

 545-572
 799-826
 840-882
1035-1062


PGRSB_BACBR
GRAMICIDIN S SYNTHETASE

BACILLUS BREVIS

 48-75
 94-121
 241-282
1126-1153
1213-1240
2162-2189
2559-2586
2819-2846
3606-3633



II


PGSH1_ECOLI
GLUTAMATE-CYSTEINE

ESCHERICHIA COLI

 239-266
 274-301



LIGASE


PGSHR_ECOLI
GLUTATHIONE REDUCTASE

ESCHERICHIA COLI

 100-134
 270-311


PGSHR_PSEAE
GLUTATHIONE REDUCTASE

PSEUDOMONAS AERUGINOSA

 80-114


PGSIA_BACSU
STARVATION-INDUCIBLE

BACILLUS SUBTILIS

 74-101
 265-296



PROTEIN A


PGSPD_ERWCA
PROTEIN D PRECURSOR

ERWINIA CAROTOVORA

 258-285
 516-543
 589-619


PGSPD_ERWCH
PROTEIN D PRECURSOR

ERWINIA CHRYSANTHEMI

 259-302
 307-338
 551-578
 659-686


PGSPD_KLEPN
PROTEIN D PRECURSOR

KLEBSIELLA PNEUMONIAE

 259-286


PGSPE_ERWCA
PROTEIN E

ERWINIA CAROTOVORA

 329-367


PGSPE_ERWCH
PROTEIN E

ERWINIA CHRYSANTHEMI

 329-367


PGSPE_KLEPN
PROTEIN E

KLEBSIELLA PNEUMONIAE

 323-361


PGSPE_PSEAE
PROTEIN E

PSEUDOMONAS AERUGINOSA

 122-149
 331-369


PGSPF_XANCP
PROTEIN F

XANTHOMONAS CAMPESTRIS

 230-257


PGSPH_PSEAE
PROTEIN H PRECURSOR

PSEUDOMONAS AERUGINOSA

 18-59


PGSPI_AERHY
PROTEIN I PRECURSOR

AEROMONAS HYDROPHILA

 27-61


PGSPI_ERWCA
PROTEIN I PRECURSOR

ERWINIA CAROTOVORA

 35-62


PGSPJ_KLEPN
PROTEIN J PRECURSOR

KLEBSIELLA PNEUMONIAE

 140-167


PGSPK_ERWCA
PROTEIN K

ERWINIA CAROTOVORA

 28-55


PGSPK_ERWCH
PROTEIN K

ERWINIA CHRYSANTHEMI

 28-55


PGSPK_KLEPN
PROTEIN K

KLEBSIELLA PNEUMONIAE

 72-99


PGSPK_PSEAE
PROTEIN K

PSEUDOMONAS AERUGINOSA

 262-289


PGSPL_ERWCH
PROTEIN L

ERWINIA CHRYSANTHEMI

  7-42
 248-286
 331-358


PGSPL_XANCP
PROTEIN L

XANTHOMONAS CAMPESTRIS

 39-73
 297-324


PGSPM_ERWCA
PROTEIN M

ERWINIA CAROTOVORA

 108-145


PGSQD_ERWCH
PROTEIN D PRECURSOR

ERWINIA CHRYSANTHEMI

 259-302
 448-475
 546-573
 657-684


PGTF1_STRDO
GLUCOSYLTRANSFERASE-I

STREPTOCOCCUS DOWNEI

 42-69
 177-204
 212-239
 464-491
1382-1416
1495-1529



PRECURSOR


PGTF2_STRDO
GLUCOSYLTRANSFERASE-I

STREPTOCOCCUS DOWNEI

 171-198
 206-233
 458-485
1382-1412
1497-1524



PRECURSOR


PGTFA_STRMU
GLUCOSYLTRANSFERASE-S

STREPTOCOCCUS MUTANS

 297-350


PGTFB_STRMU
GLUCOSYLTRANSFERASE-I

STREPTOCOCCUS MUTANS

 42-93
 110-137
 161-188
 199-246
 313-347
 592-627



PRECURSOR


PGTFC_STRMU
GLUCOSYLTRANSFERASE-SI

STREPTOCOCCUS MUTANS

  4-40
 110-138
 235-262
 330-361
 614-653



PRECURSOR


PGTFS_STRDO
GLUCOSYLTRANSFERASE-S

STREPTOCOCCUS DOWNEI

 275-316
 436-463
1281-1315



PRECURSOR


PGTMR_METTF
POSSIBLE G-T MISMATCHES

METHANOBACTERIUM

 80-107
 148-175



REPAIR ENZYME

THERMOFORMICICUM



PGUAA_BACSU
GMP SYNTHASE

BACILLUS SUBTILIS

 314-348
 399-436
 478-505


PGUAA_ECOLI
GMP SYNTHASE

ESCHERICHIA COLI

 105-132


PGUB_BACCI
BETA-GLUCANASE

BACILLUS CIRCULANS

 164-191



PRECURSOR


PGUB_BACLI
BETA-GLUCANASE

BACILLUS LICHENIFORMIS

 132-166



PRECURSOR


PGUB_BACMA
BETA-GLUCANASE

BACILLUS MACERANS

 126-160



PRECURSOR


PGUN1_BACS4
ENDOGLUCANASE A

BACILLUS SP
 18-49


PGUN1_BACSU
ENDOGLUCANASE

BACILLUS SUBTILIS

 270-304
 376-403



PRECURSOR


PGUN1_BUTFI
ENDOGLUCANASE 1

BUTYRIVIBRIO FIBRISOLVENS

 154-181
 452-495


PGUN2_BACSU
ENDOGLUCANASE

BACILLUS SUBTILIS

 270-304



PRECURSOR


PGUN2_THEFU
ENDOGLUCANASE E-2

THERMOMONOSPORA FUSCA

 201-228



PRECURSOR


PGUN3_BACS4
ENDOGLUCANASE C

BACILLUS SP
 110-137
 348-378
 538-565



PRECURSOR


PGUN3_BACSU
ENDOGLUCANASE

BACILLUS SUBTILIS

 270-304



PRECURSOR


PGUN3_FIBSU
ENDOGLUCANASE 3

FIBROBACTER SUCCINOGENES

 542-586



PRECURSOR


PGUN4_THEFU
ENDOGLUCANASE E-4

THERMOMONOSPORA FUSCA

 308-342



PRECURSOR


PGUN5_THEFU
ENDOGLUCANASE E-5

THERMOMONOSPORA FUSCA

 44-71



PRECURSOR


PGUNA_BACLA
ENDOGLUCANASE A

BACILLUS LAUTUS

 410-437
 454-481



PRECURSOR


PGUNA_CLOTM
ENDOGLUCANASE A

CLOSTRIDIUM THERMOCELLUM

 354-384



PRECURSOR


PGUNA_PSEFL
ENDOGLUCANASE A

PSEUDOMONAS FLUORESCENS

 762-789



PRECURSOR


PGUNA_RUMAL
ENDOGLUCANASE A

RUMINOCOCCUS ALBUS

 294-321


PGUNA_RUMFL
CELLODEXTRINASE A

RUMINOCOCCUS FLAVEFACIENS

 276-303


PGUNB_BACLA
ENDOGLUCANASE B

BACILLUS LAUTUS

 375-450



PRECURSOR


PGUNB_CALSA
ENDOGLUCANASE B

CALDOCELLUM SACCHAROLYTI-
 151-182
 444-478





CUM



PGUNB_CELFI
ENDOGLUCANASE B

CELLULOMONAS FIMI

 266-293



PRECURSOR


PGUNB_CLOCL
ENDOGLUCANASE B

CLOSTRIDIUM CELLULOVORANS

 144-171
 266-300



PRECURSOR


PGUNB_CLOTM
ENDOGLUCANASE B

CLOSTRIDIUM THERMOCELLUM

 514-541



PRECURSOR


PGUNC_CELFI
ENDOGLUCANASE C

CELLULOMONAS FIMI

 881-908



PRECURSOR


PGUNC_PSEFL
ENDOGLUCANASE C

PSEUDOMONAS FLUORESCENS

 52-82



PRECURSOR


PGUND_CLOCE
ENDOGLUCANASE D

CLOSTRIDIUM CELLULOLYTICUM

 382-453



PRECURSOR


PGUND_CLOCL
ENDOGLUCANASE D

CLOSTRIDIUM CELLULOLYTICUM

 145-172
 271-298



PRECURSOR


PGUNE_CLOTM
ENDOGLUCANASE E

CLOSTRIDIUM THERMOCELLUM

 158-185
 207-234
 284-311



PRECURSOR


PGUNH_CLOTM
ENDOGLUCANASE H

CLOSTRIDIUM THERMOCELLUM

 46-73
 425-452



PRECURSOR


PGUNS_ERWCA
ENDOGLUCANASE

ERWINIA CAROTOVORA

 20-47
 115-149



PRECURSOR


PGUNX_CLOTM
PUTATIVE ENDOGLUCANASE

CLOSTRIDIUM THERMOCELLUM

 105-139



X


PGUNZ_CLOSR
ENDOGLUCANASE Z

CLOSTRIDIUM STERCORARIUM

 296-326
 522-549



PRECURSOR


PGUN_BACPO
ENDOGLUCANASE

BACILLUS POLYMYXA

 198-225


PGUN_BACS1
ENDOGLUCANASE

BACILLUS SP
 321-348



PRECURSOR


PGUN_BACS6
ENDOGLUCANASE

BACILLUS SP
 198-229
 501-528
 623-664



PRECURSOR


PGUTD_ECOLI
SORBITOL-6-PHOSPHATE 2-

ESCHERICHIA COLI

 138-165



DEHYDROGENASE


PGVP1_HALHA
GAS VESICLE PROTEIN,

HALOBACTERIUM HALOBIUM

 36-63



PLASMID


PGVP2_HALHA
GAS VESTILE PROTEIN,

HALOBACTERIUM HALOBIUM

 36-63



CHROMOSOMAL


PGVPA_APHFL
GAS VESICLE PROTEIN

APHANIZOMENON FLOS-AQUAE
  4-31
 39-66


PGVPA_FREDI
GAS VESICLE PROTEIN

FREMYELLA DIPLOSIPHON

  4-31
 39-66


PGVPA_HALME
GAS VESICLE PROTEIN

HALOBACTERIUM MEDITERRANEI

 37-64


PGVPA_MICBC
GAS VESICLE PROTEIN

MICROCYSTIS SP
 39-66


PGVPA_PSEAN
GAS VESICLE PROTEIN

PSEUDONANABAENA SP
  4-31
 39-66


PGVPC_APHFL
GAS VESICLE PROTEIN C

APHANIZOMENON FLOS-AQUAE
  8-49


PGVPC_HALHA
GAS VESICLE PROTEIN C

HALOBACTERIUM HALOBIUM

 150-249


PGVPC_HALME
GAS VESICLE PROTEIN C

HALOBACTERIUM MEDITERRANEI

 139-169


PGVPD_HALHA
GVPD PROTEIN, PLASMID

HALOBACTERIUM HALOBIUM

 110-147


PGVPD_HALME
GVPD PROTEIN

HALOBACTERIUM MEDITERRANEI

 110-147


PGVPF_HALHA
GVPF PROTEIN, PLASMID

HALOBACTERIUM HALOBIUM

 13-47
 135-169


PGVPF_HALME
GVPF PROTEIN

HALOBACTERIUM MEDITERRANEI

 13-47


PGVPF_HALSA
GVPF PROTEIN

HALOBACTERIUM SALINARIUM

  8-49


PGVPF_HALHA
GVPG PROTEIN, PLASMID

HALOBACTERIUM HALOBIUM

 38-65


PGVPG_HALME
GVPG PROTEIN

HALOBACTERIUM MEDITERRANEI

 38-72


PGVPH_HALHA
GVPH PROTEIN

HALOBACTERIUM HALOBIUM

 10-40


PGVPI_HALME
GVPI PROTEIN

HALOBACTERIUM MEDITERRANEI

  5-32


PGVPK_HALHA
GVPK PROTEIN

HALOBACTERIUM HALOBIUM

 45-76


PGVPK_HALME
GVPK PROTEIN

HALOBACTERIUM MEDITERRANEI

 12-39
 47-74


PGVPK_HALSA
GVPK PROTEIN

HALOBACTERIUM SALINARIUM

 11-38
 50-77


PGVPL_HALME
GVPL PROTEIN

HALOBACTERIUM MEDITERRANEI

 44-78


PGVPN_HALHA
GVPN PROTEIN

HALOBACTERIUM HALOBIUM

 113-140


PGVPN_HALME
GVPN PROTEIN

HALOBACTERIUM MEDITERRANEI

 15-56


PGVPO_HALME
GVPO PROTEIN

HALOBACTERIUM MEDITERRANEI

 69-96
 105-132


PGYRA_BACSU
DNA GYRASE SUBUNIT A

BACILLUS SUBTILIS

 380-407
 429-499


PGYRA_CAMJE
DNA GYRASE SUBUNIT A

CAMPYLOBACTER JEJUNI

 267-310
 381-408
 452-479
 665-695


PGYRA_ECOLI
DNA GYRASE SUBUNIT A

ESCHERICHIA COLI

 266-293
 449-497


PGYRA_KLEPN
DNA GYRASE SUBUNIT A

KLEBSIELLA PNEUMONIAE

 266-293
 448-496
 518-545


PGYRA_MYCPN
DNA GYRASE SUBUNIT A

MYCOPLASMA PNEUMONIAE

  4-31


PGYRA_STAAU
DNA GYRASE SUBUNIT A

STAPHYLOCOCCUS AUREUS

 129-156
 346-373
 430-479
 647-674
 812-839


PGYRB_BACSU
DNA GYRASE SUBUNIT B

BACILLUS SUBTILIS

 198-239


PGYRB_BORBU
DNA GYRASE SUBUNIT B

BORRELIA BURGDORFERI

 154-181


PGYRB_ECOLI
DNA GYRASE SUBUNIT B

ESCHERICHIA COLI

 616-643


PGYRB_HALSQ
DNA GYRASE SUBUNIT B

HALOFERAX SP
 230-257


PGYRB_MYCPN
DNA GYRASE SUBUNIT B

MYCOPLASMA PNEUMONIAE

 249-283


PGYRB_NEIGO
DNA GYRASE SUBUNIT B

NEISSERIA GONORRHOEAE

 524-558
 618-645


PGYRB_PSEPU
DNA GYRASE SUBUNIT B

PSEUDOMONAS PUTIDA

 122-149
 684-711


PGYRB_SPICI
DNA GYRASE SUBUNIT B

SPIROPLASMA CITRI

 40-74
 189-238
 283-310
 341-368
 540-579


PGYRB_STAAU
DNA GYRASE SUBUNIT B

STAPHYLOCOCCUS AUREUS

 252-279
 291-318


PHDHA_ECOLI
7-ALPHA-HYDROXYSTEROID

ESCHERICHIA COLI

 71-98



DEHYDROGENASE


PHELD_ECOLI
HELICASE IV

ESCHERICHIA COLI

 100-134
 529-556


PHEL_HAEIN
LIPROPROTEIN E PRECURSOR

HAEMOPHILUS INFLUENZAE

 58-85


PHEM1_CHLVI
GLUTAMYL-TRNA

CHLOROBIUM VIBRIOFORMES

 232-259



REDUCTASE


PHEM1_ECOLI
GLUTAMYL-TRNA

ESCHERICHIA COLI

 289-316



REDUCTASE


PHEM1_RHOSH
5-AMINOLEVULINIC ACID

RHODOBACTER SPHAEROIDES

 73-100



SYNTHASE


PHEM1_SALTY
GLUTAMYL-TRNA

SALMONELLA TYPHIMURIUM

 289-316
 344-371



REDUCTASE(


PHEM1_SYNY3
GLUTAMYL-TRNA

SYNECHOCYSTIS SP
 163-190
 350-377



REDUCTASE


PHEM2_METSC
DELTA-AMINOLEVULINIC

METHANOTHERMUS SOCIABILIS

 131-158



ACID DEHYDRATASE


PHEM4_BACSU
PUTATIVE UROPORPHYRINO-

BACILLUS SUBTILIS

 10-37



GEN-III SYNTHASE


PHEM4_ECOLI
UROPORPHYRINOGEN-III

ESCHERICHIA COLI

 211-238



SYNTHASE


PHEMM_ECOLI
HEMM PROTEIN

ESCHERICHIA COLI

 147-174


PHEMR_YEREN
HEMIN RECEPTOR

YERSINIA ENTEROCOLITICA

 234-261



PRECURSOR


PHEMX_ECOLI
PUTATIVE METHYL-

ESCHERICHIA COLI

 69-138
 185-219



TRANSFERASE


PHEMY_BACSU
HEMY PROTEIN

BACILLUS SUBTILIS

 217-262


PHEMZ_BACSU
FERROCHELATASE

BACILLUS SUBTILIS

 199-226


PHETA_ANASP
HETEROCYST DIFFERENTIA-

ANABAENA SP
 184-211
 357-398
 521-565



TION PROTEIN


PHEXA_STRPN
DNA MISMATCH REPAIR

STREPTOCOCCUS PNEUMONIAE

 426-460



PROTEIN HEXA


PHEXB_STRPN
DNA MISMATCH REPAIR

STREPTOCOCCUS PNEUMONIAE

 470-497



PROTEIN HEXB


PHFAB_CAUCR
POS TRANSACTIVATOR

CAULOBACTER CRESCENTUS

 98-125



PROTEIN HFAB


PHFLC_ECOLI
HFLC PROTEIN

ESCHERICHIA COLI

 113-140


PHFLX_ECOLI
GTP-BINDING PROTEIN HFLX

ESCHERICHIA COLI

 169-196


PHFQ_ECOLI
HOST FACTOR-1 PROTEIN

ESCHERICHIA COLI

 24-51


PHIFC_HAEIN
PILIATION PROTEIN HIFC

HAEMOPHILUS INFLUENZAE

 356-383
 404-431
 447-474



PRECURSOR


PHIS2_LACLA
PHOSPHORIBOSYL-AMP

LACTOCOCCUS LACTIS

 126-174



CYCLOHYDROLASE


PHIS4_ECOLI
P-5-A CARBOXAMIDE

ESCHERICHIA COLI

 125-159



RIBOTIDE


PHIS4_LACLA
P-5-A CARBOXAMIDE

LACTOCOCCUS LACTIS

 49-89
 181-228



RIBOTIDE


PHIS4_METVA
P-5-A CARBOXAMIDE

METHANOCOCCUS VANNIELII

 115-142



RIBOTIDE


PHIS4_SALTY
P-5-A CARBOXAMIDE

SALMONELLA TYPHIMURIUM

 125-159



RIBOTIDE


PHIS5_LACLA
AMIDOTRANSFERASE HISH

LACTOCOCCUS LACTIS

  7-34


PHIS6_ECOLI
HISF PROTEIN

ESCHERICHIA COLI

 39-66
 142-169


PHIS6_SALTY
HISF PROTEIN

SALMONELLA TYPHIMURIUM

 39-66
 142-169


PHIS7_ECOLI
IMIDAZOLEGLYCEROL-

ESCHERICHIA COLI

 168-199



PHOSPHATE DEHYDRATASE


PHIS7_SALTY
IMIDAZOLEGLYCEROL-

SALMONELLA TYPHIMURIUM

 161-199



PHOSPHATE DEHYDRATASE


PHIS8_ECOLI
HISTIDINOL-PHOSPHATE

ESCHERICHIA COLI

 290-317



AMINOTRANSFERASE


PHIS8_HALVO
HISTIDINOL-PHOSPHATE

HALOBACTERIUM VOLCANII

 174-201



AMINOTRANSFERASE


PHIS8_LACLA
HISTIDINOL-PHOSPHATE

LACTOCOCCUS LACTIS

 161-188



AMINOTRANSFERASE


PHIS8_SALTY
HISTIDINOL-PHOSPHATE

SALMONELLA TYPHIMURIUM

 293-320



AMINOTRANSFERASE


PHISQ_SALTY
HISTIDINE PERMEASE

SALMONELLA TYPHIMURIUM

  8-35



MEMBRANE Q PROTEIN


PHISX_ECOLI
HISTIDINOL DEHYDRO-

ESCHERICHIA COLI

 393-434



GENASE


PHISX_LACLA
HISTIDINOL DEHYDRO-

LACTOCOCCUS LACTIS

 19-46
 264-303



GENASE


PHISX_MYCSM
HISTIDINOL DEHYDRO-

MYCOBACTERIUM SMEGMATIS

 288-329
 399-430



GENASE


PHISX_SALTY
HISTIDINOL DEHYDRO-

SALMONELLA TYPHIMURIUM

 393-434



GENASE


PHLA_STAAU
ALPHA-HEMOLYSIN

STAPHYLOCOCCUS AUREUS

 69-103



PRECURSOR


PHLY1_ECOLI
HEMOLYSIN A, CHROMO-

ESCHERICHIA COLI

  5-32
 76-103
 161-224
 234-261
 353-380
 458-492
 554-581
 642-728



SOMAL


PHYL2_ECOLI
HAEMOLYSIN SECRETION

ESCHERICHIA COLI

 487-514



PROTEIN, CHROMOSOMA


PHLY4_ECOLI
HEMOLYSIN D, CHROMO-

ESCHERICHIA COLI

 103-133
 178-215
 223-331



SOMAL


PHLYA_ACTPL
HEMOLYSIN

ACTINOBACILLUS PLEURO-
  5-39
 136-170
 184-218
 273-300
 350-377
 459-527
 846-924





PNEUMONIAE



PHLYA_ACTSU
HEMOLYSIN

ACTINOBACILLUS SUIS

  5-39
 136-170
 184-218
 273-300
 350-377
 459-527
 846-924


PHLYA_ECOLI
HEMOLYSIN A, PLASMID

ESCHERICHIA COLI

  5-32
 76-103
 161-262
 354-381
 452-493
 555-582
 643-729


PHLYA_PROMI
HEMOLYSIN PRECURSOR

PROTEUS MIRABILIS

 165-196
 299-338
 356-400
 425-471
 498-525
 528-576
 610-695
 705-742
 747-774





 789-823
 841-868
 966-993
1113-1140
1166-1193
1225-1273
1301-1342
1391-1461
1483-1527


PHLYA_SERMA
HEMOLYSIN PRECURSOR

SERRATIA MARCESCENS

 311-345
 477-504
 558-585
 625-703
 718-745
 830-864
1081-1108
1155-1202
1249-1286





1516-1553


PHLYA_VIBCH
HEMOLYSIN PRECURSOR

VIBRIO CHOLERAE

 335-369
 638-665


PHLYB_ACTPL
HAEMOLYSIN SECRETION

ACTINOBACILLUS PLEURO-
 34-61



PROTEIN

PNEUMONIAE



PHLYB_ECOLI
HAEMOLYSIN SECRETION

ESCHERICHIA COLI

 487-514



PROTEIN, PLASMID


PHLYB_PROMI
HEMOLYSIN ACTIVATOR

PROTEUS MIRABILIS

 16-64
 499-547



PROTEIN PRECURSOR


PHLYB_PROVU
HAEMOLYSIN SECRETION

PROTEUS VULGARIS

 34-68
 487-514



PROTEIN


PHLYB_SERMA
HEMOLYSIN ACTIVATOR

SERRATIA MARCESCENS

 110-137



PROTEIN PRECURSOR


PHLYB_VIBCH
HEMOLYSIN SECRETION

VIBRIO CHOLERAE

 335-398
 413-447
 458-524



PROTEIN PRECURSOR


PHLYC_ACTPL
HEMOLYSIN C

ACTINOBACILLUS PLEURO-
 130-157





PNEUMONIAE



PHLYD_ACTPL
HEMOLYSIN SECRETION

ACTINOBACILLUS PLEURO-
 191-331



PROTEIN APPD

PNEUMONIAE



PHLYD_ECOLI
HEMOLYSIN D, PLASMID

ESCHERICHIA COLI

 103-133
 178-215
 223-331


PHLY_HALI7
HALOLYSIN PRECURSOR

HALOPHILIC BACTERIA

 484-516




STRAIN 172P1


PHMC3_DESVH
43.2 KD PROTEIN IN HMC

DESULFOBIVRIO VULGARIS

 156-186



OPERON


PHMD_METKA
H(2)-FORMING DEHYDRO-

METHANOPYRUS KANDLERI

 36-63



GENASE


PHNS_SERMA
DNA-BINDING PROTEIN H-NS

SERRATIA MARCESCENS

 35-62


PHOLA_ECOLI
DNA POLYMERASE III, DELTA

ESCHERICHIA COLI

 94-121
 288-322



SUBUNIT


PHOXA_BRAJA
REG PROTEIN HOXA

BRADYRHIZOBIUM JAPONICUM

 113-163
 444-471


PHOXF_NOCOP
HOXS ALPHA SUBUNIT

NOCARDIA OPACA

  4-31


PHOXQ_ALCEU
HOXQ PROTEIN

ALCALIGENES EUTROPHUS

 76-110


PHOXX_BRAJA
HOXX PROTEIN

BRADYRHIZOBIUM JAPONICUM

 356-383


PHPI_DEIRA
HEXAGONALLY SURFACE

DEINOCCCUS RADIODURANS

 585-612



PROTEIN PRECURSOR


PHPRT_LACLA
PHOSPHORIBOSYL-

LACTOCOCCUS LACTIS

  3-39
 71-105



TRANSFERASE


PHRDD_STRCO
SIGMA FACTOR HRDD

STREPTOMYCES COELICOLOR

 296-323


PHRPB_BURSO
REGULATORY PROTEIN HRPB

BURKHOLDERIA SOLANACEARUM

 371-405


PHRPH_PSESY
OUTER MEMBRANE PROTEIN

PSEUDOMONAS SYRINGAE

 102-129
 310-344



HRPH PRECURSOR


PHRPS_PSESH
PROBABLE REGULATORY

PSEUDOMONAS SYRINGAE

 24-51



PROTEIN HRPS


PHS18_CLOAB
18 KB HEAT SHOCK PROTEIN

CLOSTRIDIUM ACETOBUTYLICUM

 67-108


PHS70_HALMA
HEAT SHOCK 70 KD PROTEIN

HALOARCULA MARISMORTUI

 522-576


PHS70_MYCLE
HEAT SHOCK 70 KD PROTEIN

MYCOBACTERIUM LEPRAE

 461-488
 503-530


PHS70_MYCPA
HEAT SHOCK 70 KD PROTEIN

MYCOBACTERIUM PARA-
 460-487





TUBERCULOSIS



PHTPG_ECOLI
HEAT SHOCK PROTEIN C62.5

ESCHERICHIA COLI

 221-248
 482-509


PHTRA_ECOLI
PROTEASE DO PRECURSOR

ESCHERICHIA COLI

 373-400


PHTRE_ECOLI
HTRE PROTEIN PRECURSOR

ESCHERICHIA COLI

 454-484
 524-576


PHTRJ_HALHA
SENSORY RHODOPSIN I

HALOBACTERIUM HALOBIUM

 413-471
 479-506



TRANSDUCER


PHTRJ_HALSA
SENSORY RHODOPSIN I

HALOBACTERIUM SALINARIUM

 114-159
 413-471
 479-506



TRANSDUCER


PHUTP_BACSU
HUT OPERON POSITIVE

BACILLUS SUBTILIS

  5-36



REGULATORY PROTEIN


PHVTJ_LACHE
HELVETICIN J

LACTOBACILLUS HELVETICUS

 174-212
 306-333


PHYCA_ECOLI
FORMATE HYDROGENYLASE

ESCHERICHIA COLI

 73-100
 106-133



SUBUNIT 1


PHYDG_ECOLI
TRANSCRIPTIONAL REGULA-

ESCHERICHIA COLI

 251-278



TORY PROTEIN HYDG


PHYDG_SALTY
TRANSCRIPTIONAL REGULA-

SALMONELLA TYPHIMURIUM

 251-278



TORY PROTEIN HYDG


PHYDH_ECOLI
SENSOR PROTEIN HYDH

ESCHERICHIA COLI

 312-339
 360-387


PHYUB_PSESN
HYDANTOIN UTILIZATION

PSEUDOMONAS SP
 554-581



PROTEIN B


PHYUC_PSESN
HYDANTOIN UTILIZATION

PSEUDOMONAS SP
  6-40
 96-123



PROTEIN


PIAAL_PSESS
INDOLEACETATE-LYSINE

PSEUDOMONAS SYRINGAE

 133-160
 297-331



LIGASE


PIAP_ECOLI
ALK PHOS ISOZYME CONVER-

ESCHERICHIA COLI

 74-101



SION PROTEIN


PICEN_ERWAN
ICE NUCLEATION PROTEIN

ERWINIA ANANAS

 326-353
 422-449
 534-561
 614-641
 662-689
 721-748
 758-785
 854-881
 950-977





1046-1073


PICEN_ERWHE
ICE NUCLEATION PROTEIN

ERWINIA HERBICOLA

 310-337
 406-433
 534-561
 646-673
 694-721
 838-865
 886-913
 982-1009


PICEN_PSEFL
ICE NUCLEATION PROTEIN

PSEUDOMONAS FLUORESCENS

 281-308
 377-404
 425-452
 681-708
 729-781
 795-852


PICEN_PSESY
ICE NUCLEATION PROTEIN

PSEUDOMONAS SYRINGAE

 564-602
 772-847
 868-895
 909-943


PICEN_XANCT
ICE NUCLEATION PROTEIN

XANTHOMONAS CAMPESTRIS

 496-534
 555-582
1168-1204
1248-1275


PICSB_SHIFL
INTERCELLULAR SPREAD

SHIGELLA FLEXNERI

 41-105
 438-467



PROTEIN


PIF2_BACST
INITIATION FACTOR IF-2

BACILLUS STEAROTHERMOPHILUS

 540-567
 681-708


PIF2_BACSU
INITIATION FACTOR IF-2

BACILLUS SUBTILIS

 173-208
 394-421


PIF2_ECOLI
INITIATION FACTOR IF-2

ESCHERICHIA COLI

 686-724
 835-862


PIF2_ENTFC
INITIATION FACTOR IF-2

ENTEROCOCCUS FAECIUM

 579-627


PIF3_BACST
INITIATION FACTOR IF-3

BACILLUS STEAROTHERMOPHILUS

  7-34


PIF3_ECOLI
INITIATION FACTOR IF-3

ESCHERICHIA COLI

 27-54
 70-97


PIF3_KLEPN
INITIATION FACTOR IF-3

KLEBSIELLA PNEUMONIAE

 27-54
 70-97


PIF3_MYCFE
INITIATION FACTOR IF-3

MYCOPLASMA FERMENTANS

 177-211


PIF3_PROVU
INITIATION FACTOR IF-3

PROTEUS VULGARIS

  2-29
 70-97


PIF3_SALTY
INITIATION FACTOR IF-3

SALMONELLA TYPHIMURIUM

 27-54
 70-97


PIF3_SERMA
INITIATION FACTOR IF-3

SERRATIA MARCESCENS

 19-46
 70-97


PIGA_NEIGO
IGA-SPECIFIC SERINE

NEISSERIA GONORRHOEAE

 245-272
 287-314
 833-860
1024-1058
1377-1404
1483-1531



ENDOPEPTIDASE


PIGGB_STRSP
IGG BINDING PROTEIN

STREPTOCOCCUS SP
 46-76
 120-150
 195-222



PRECURSOR


PIGGG_STRSP
IGG BINDING PROTEIN

STREPTOCOCCUS SP
 46-76
 120-150
 195-225
 270-297



PRECURSOR


PILVH_ECOLI
ACETOLACTATE SYNTHASE

ESCHERICHIA COLI

 47-81
 120-147


PILVH_SALTY
ACETOLACTATE SYNTHASE

SALMONELLA TYPHIMURIUM

 47-81
 120-147


PILVN_LACLA
ACETOLACTATE SYNTHASE

LACTOCOCCUS LACTIS

 20-75


PIMPB_SALTY
IMPB PROTEIN

SALMONELLA TYPHIMURIUM

 185-212


PIMP_ACICA
INOSINE-5′-MONOPHOSPHATE

ACINETOBACTER CALCOACETICUS

 166-193



DEHYDROGENASE


PIMP_BACSU
E-5′-MONOPHOSPHATE

BACILLUS SUBTILIS

 159-186



DEHYDROGENASE


PINA_BACTL
IMMUNE INHIBITOR A

BACILLUS THURINGIENSIS

 103-130
 324-358



PRECURSOR


PINLA_LISMO
INTERNALIN A

LISTERIA MONOCYTOGENES

 106-143
 161-188
 196-232


PINLB_LISMO
INTERNALIN B PRECURSOR

LISTERIA MONOCYTOGENES

 53-94
 166-200
 385-415


PINVA_YEREN
INVASIN

YERSINIA ENTEROCOLITICA

 501-535


PIPA7_SHIFL
60 KD ANTIGEN

SHIGELLA FLEXNERI

 285-312


PIPAA_SHIFL
70 KD ANTIGEN

SHIGELLA FLEXNERI

 95-136
 437-475
 493-557
 596-630


PIPAB_SHIDY
62 KD MEMBRANE ANTIGEN

SHIGELLA DYSENTERIAE

 28-55
 71-169
 480-507
 522-556


PIPAB_SHIFL
62 KD MEMBRANE ANTIGEN

SHIGELLA FLEXNERI

 28-55
 71-169
 480-507
 522-556


PIPAC_SHIDY
42 KD MEMBRANE ANTIGEN

SHIGELLA DYSENTERIAE

 21-57
 113-161
 273-300
 324-378



PRECURSOR


PIPAC_SHIFL
42 KD MEMBRANE ANTIGEN

SHIGELLA FLEXNERI

 28-57
 113-161
 273-300
 324-372



PRECURSOR


PIPAD_SHIDY
37 KD MEMBRANE ANTIGEN

SHIGELLA DYSENTERIAE

 47-86
 291-318



IPAD


PIPAD_SHIFL
36 KD MEMBRANE ANTIGEN

SHIGELLA FLEXNERI

 47-86
 259-286
 291-318


PIPGB_SHIDY
IPGB PROTEIN

SHIGELLA DYSENTERIAE

 175-202


PIPGB_SHIFL
IPGB PROTEIN

SHIGELLA FLEXNERI

 175-202


PIPT_PSESS
ISOPENTENYL TRANSFERASE

PSEUDOMONAS SYRINGAE

 53-87
 143-173


PIPYR_ECOLI
INORGANIC PYROPHOSPHA-

ESCHERICHIA COLI

 138-172



TASE


PIRGA_VIBCH
VIRULENCE PROTEIN

VIBRIO CHOLERAE

 212-239
 336-377



PRECURSOR


PIRGB_VIBCH
VIRULENCE REGULATORY

VIBRIO CHOLERAE


 67-97



PROTEIN IRGB


PIRPA_SYNP7
IRON-REGULATED PROTEIN A

SYNECHOCOCCUS SP
 167-194


PISBD_SHIDY
INSERTION ELEMENT ISO-

SHIGELLA DYSENTERIAE

 86-113



ISID PROTEIN INSB


PISBN_SHIDY
INSERTION ELEMENT ISO-

SHIGELLA DYSENTERIAE

  6-37



ISIN PROTEIN INSB


PISB_ECOLI
INSERTION ELEMENT IS1

ESCHERICHIA COLI

 122-149



PROTEIN INSB


PISB_SHIFL
INSERTION ELEMENT IS1

SHIGELLA FLEXNERI

 86-113



PROTEIN INSB


PISB_SHISO
INSERTION ELEMENT IS1

SHIGELLA SONNEI

 86-113



PROTEIN INSB


PISP1_BACSU
MAJOR INTRACELLULAR

BACILLUS SUBTILIS

 115-142
 197-224
 253-280



SERINE PROTEASE


PISP_BACPO
INTRACELLULAR SERINE

BACILLUS POLYMYXA

 109-143



PROTEASE


PISTA_ECOLI
ISTA PROTEIN

ESCHERICHIA COLI

 183-210


PISTA_SHISO
ISTA PROTEIN

SHIGELLA SONNEI

 183-210


PIUTA_ECOLI
FERRIC AEROBACTIN

ESCHERICHIA COLI

 186-213
 525-552
 559-593



RECEPTOR PRECURSOR


PJAG_BACSU
JAG PROTEIN

BACILLUS SUBTILIS

 68-95


PK6P2_ECOLI
6-PHOSPHOFRUCTOKINASE

ESCHERICHIA COLI

 143-170



ISOZYME 2


PKAD_BACSU
ADENYLATE KINASE

BACILLUS SUBTILIS

 188-215


PKAD_LACLA
ADENYLATE KINASE

LACTOCOCCUS LACTIS

 186-213


PKANU_BACSP
KANAMYCIN NUCLEOTIDYL-

BACILLUS SP
 69-96



TRANSFERASE


PKANU_STAAU
KANAMYCIN NUCLEOTIDYL-

STAPHYLOCOCCUS AUREUS

 69-96



TRANSFERASE


PKDGT_ECOLI
2-KETO-3-DEOXYGLUCONATE

ESCHERICHIA COLI

 70-97



PERMEASE


PKDGT_ERWCH
2-KETO-3-DEOXYGLUCONATE

ERWINIA CHRYSANTHEMI

 126-153



PERMEASE


PKDTA_ECOLI
3-DEOXY-D-MANNO-

ESCHERICHIA COLI

 369-396



OCTULOSONIC-ACID TRANS


PKGTP_ECOLI
ALPHA-KETOGLUTARATE

ESCHERICHIA COLI

  7-34



PERMEASE


PKGUA_ECOLI
GUANYLATE KINASE

ESCHERICHIA COLI

 162-189


PKHSE_BACSU
HOMOSERINE KINASE

BACILLUS SUBTILIS

 49-76


PKHSE_FREDI
HOMOSERINE KINASE

FREMYELLA DIPLOSIPHON

 52-79


PKKA4_BACCI
AMINOGLYCOSIDE 3′-

BACILLUS CIRCULANS

 12-39



PHOSPHOTRANSFERASE


PKORB_ECOLI
KORB TRANSCRIPTIONAL

ESCHERICHIA COLI

 228-255



REPRESSOR PROTEIN


PKPY1_SPICI
PYRUVATE KINASE

SPIROPLASMA CITRI

 112-148


PKPYK_BACST
PYRUVATE KINASE

BACILLUS STEAROTHERMOPHILUS

 331-374


PLACA_STAAU
ISOMERASE LACA SUBUNIT

STAPHYLOCOCCUS AUREUS

  9-64


PLACA_STRMU
ISOMERASE LACA SUBUNIT

STAPHYLOCOCCUS MUTANS

 26-60


PLACC_STRMU
TAGATOSE-6-PHOSPHATE

STAPHYLOCOCCUS MUTANS

 56-83
 283-310



KINASE


PLACG_LACCA
6-PHOSPHO-BETA-GALACTO-

LACTOBACILLUS CASEI

 290-317



SIDASE


PLACI_ECOLI
LACTOSE OPERON

ESCHERICHIA COLI

  9-36



REPRESSOR


PLACI_KLEPN
LACTOSE OPERON

KLEBSIELLA PNEUMONIAE

 195-229



REPRESSOR


PLACR_STAAU
PHOSPHOTRANSFERASE

STAPHYLOCOCCUS AUREUS

  2-29



REPRESSOR


PLACR_STRMU
PHOSPHOTRANSFERASE

STREPTOCOCCUS MUTANS

  2-32



REPRESSOR


PLACY_LACDE
LACTOSE PERMEASE

LACTOBACILLUS DELBRUECKII

 196-230


PLAFB_VIBPA
FLAGELLAR HOOK-

VIBRIO PARAHAEMOLYTICUS

 62-89
 388-415



ASSOCIATED PROTEIN 2


PLAMB_KLEPN
MALTOPORIN PRECURSOR

KLEBSIELLA PNEUMONIAE

 337-364


PLAMI_CLOTM
ENDO-1,3(4)-BETA-

CLOSTRIDIUM THERMOCELLUM

 132-159



GLUCANASE PRECURSOR


PLASI_PSEAE
OHHL SYNTHESIS PROTEIN

PSEUDOMONAS AERUGINOSA

 171-198



LASI


PLCCI_LEUGE
PROBABLE LEUCOCIN A

LEUCONOSTOC GELIDUM

 41-71



IMMUNITY PROTEIN


PLCNC_LACLA
LACTOCOCCIN A SECRETION

LACTOCOCCUS LACTIS

 162-189
 207-234
 388-433



PROTEIN LCNC


PLCND_LACLA
LACTOCOCCIN A SECRETION

LACTOCOCCUS LACTIS

 99-126
 140-202
 237-307



PROTEIN LCND


PLCRD_YEREN
LOW CALCIUM RESPONSE

YERSINIA ENTEROCOLITICA

 122-149
 491-518



LOCUS PROTEIN D


PLCRD_YERPE
LOW CALCIUM RESPONSE

YERSINIA PESTIS

 122-149
 491-518



LOCUS PROTEIN D


PLCRV_YERPE
VIRULENCE-ASSOCIATED V

YERSINIA PESTIS

 22-49
 157-184
 240-267



ANTIGEN


PLCRV_YERPS
VIRULENCE-ASSOCIATED V

YERSINIA PSEUDOTUBERCULOSIS

 22-49
 240-267



ANTIGEN


PLCTB_BACCA
LCTB PROTEIN

BACILLUS CALDOTENAX

 18-45


PLCTB_BACST
LCTB PROTEIN

BACILLUS STEAROTHERMOPHILUS

 14-45


PLDHD_LACPL
D-LACTATE DEHYDRO-

LACTOBACILLUS PLANTARUM

 51-81



GENASE


PLDHP_BACPS
L-LACTATE DEHYDRO-

BACILLUS PSYCHRO-
  2-43
 241-272
 279-306



GENASE P

SACCHAROLYTICUS



PLDHX_BACPS
L-LACTATE DEHYDRO-

BACILLUS PSYCHRO-
  2-43
 241-275
 279-306



GENASE X

SACCHAROLYTICUS



PLDH_BACME
L-LACTATE DEHYDRO-

BACILLUS MEGATERIUM

 244-274



GENASE


PLDH_BACST
L-LACTATE DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

 241-268
 279-313



GENASE


PLDH_BACSU
L-LACTATE DEHYDRO-

BACILLUS SUBTILIS

  8-42
 240-267



GENASE


PLDH_BIFLO
L-LACTATE DEHYDRO-

BIFIDOBACTERIUM LONGUM

 22-49



GENASE


PLDH_LACPL
L-LACTATE DEHYDRO-

LACTOBACILLUS PLANTARUM

 197-231



GENASE


PLDH_LISMO
L-LACTATE DEHYDRO-

LISTERIA MONOCYTOGENES

 42-69



GENASE


PLDH_MYCHY
L-LACTATE DEHYDRO-

MYCOPLASMA HYOPNEUMONIAE

 276-310



GENASE


PLDH_THEAQ
L-LACTATE DEHYDRO-

THERMUS AQUATICUS

  3-30



GENASE


PLEF_BACAN
LETHAL FACTOR PRECURSOR

BACILLUS ANTHRACIS

 165-192
 304-331
 480-514
 548-578
 619-658
 737-764


PLEPA_PSEFL
LEPA PROTEIN

PSEUDOMONAS FLUORESCENS

 23-50


PLEP_BACSU
SIGNAL PEPTIDASE I

BACILLUS SUBTILIS

  3-30


PLEU1_ECOLI
2-ISOPROPYLMALATE

ESCHERICHIA COLI

 437-464



SYNTHASE


PLEU1_LACLA
2-ISOPROPYLMALATE

LACTOCOCCUS LACTIS

 22-49
 379-484



SYNTHASE


PLEU3_BACCO
3-ISOPROPYLMALATE

BACILLUS COAGULANS

 331-358



DEHYDROGENASE


PLEU3_CLOPA
3-ISOPROPYLMALATE

CLOSTRIDIUM PASTEURIANUM

 185-212



DEHYDROGENASE


PLEUD_LACLA
3-ISOPROPYLMALATE

LACTOCOCCUS LACTIS

 163-190



DEHYDRATASE


PLEVR_BACSU
TRANSCRIPTIONAL REGULA-

BACILLUS SUBTILIS

 297-324
 676-703
 744-774
 785-822



TORY PROTEIN LEVR


PLEXA_ERWCA
LEXA REPRESSOR

ERWINIA CAROTOVORA

 146-173


PLIP1_MORSP
LIPASE 1

MORAXELLA SP
 26-53


PLIP2_MORSP
LIPASE 2

MORAXELLA SP
 356-383


PLIPB_ECOLI
LIPB PROTEIN

ESCHERICHIA COLI

 66-93


PLIP_BURCE
LIPASE PRECURSOR

BURKHOLDERIA CEPACIA

 176-203


PLIP_PSEFL
LIPASE PRECURSOR

PSEUDOMONAS FLUORESCENS

  8-35


PLIP_PSES5
LIPASE PRECURSOR

PSEUDOMONAS SP
 176-203


PLIP_STAAU
LIPASE PRECURSOR

STAPHYLOCOCCUS AUREUS

 80-146
 512-546


PLIVB_SALTY
LEU/ILE/VAL/THR-BINDING

SALMONELLA TYPHIMURIUM

 193-220



PROTEIN PRECURSOR


PLIVC_SALTY
LEUCINE-SPECIFIC BINDING

SALMONELLA TYPHIMURIUM

 195-222



PROTEIN PRECURSOR


PLIVE_SALTY
AMINO ACID TRANSPORT

SALMONELLA TYPHIMURIUM

 121-148



PROTEIN LIVE


PLIVF_ECOLI
AMINO ACID TRANSPORT

ESCHERICHIA COLI

 23-50



PROTEIN LIVF


PLIVJ_CITFR
LEU/ILE/VAL-BINDING

CITROBACTER FREUNDII

 195-222



PROTEIN PRECURSOR


PLIVJ_ECOLI
LEU/ILE/VAL-BINDING

ESCHERICHIA COLI

 195-222



PROTEIN PRECURSOR


PLIVK_ECOLI
LEUCINE-SPECIFIC BINDING

ESCHERICHIA COLI

 195-222



PROTEIN PRECURSOR


PLIVM_ECOLI
AMINO ACID TRANSPORT

ESCHERICHIA COLI

 121-148



PROTEIN LIVM


PLKTA_ACTAC
LEUKOTOXIN

ACTINOBACILLUS ACTINO-
 113-147
 173-213
 398-443
 451-488
 593-620
 655-711





MYCETEMCOMITANS



PLKTA_PASHA
LEUKOTOXIN

PASTEURELLA HAEMOLYTICA

 53-99
 179-216
 345-372
 409-436
 455-482
 496-530
 545-572
 811-838
 853-926


PLKTB_ACTAC
LEUKOTOXIN SECRETION

ACTINOBACILLUS ACTINO-
 487-514



PROTEIN

MYCETEMCOMITANS



PLKTB_PASHA
LEUKOTOXIN SECRETION

PASTEURELLA HAEMOLYTICA

 42-69
 78-105
 488-515



PROTEIN


PLKTC_ACTAC
LTC PROTEIN

ACTINOBACILLUS ACTINO-
 58-85
 116-150





MYCETEMCOMITANS



PLKTC_PASHA
LKTC PROTEIN

PASTEURELLA HAEMOLYTICA

 123-157


PLKTD_ACTAC
LKTD PROTEIN

ACTINOBACILLUS ACTINO-
 116-164
 205-242
 278-305
 364-391





MYCETEMCOMITANS



PLKTD_PASHA
LKTD PROTEIN

PASTEURELLA HAEMOLYTICA

 184-289


PLON_ECOLI
ATP-DEPENDENT PROTEASE

ESCHERICHIA COLI

 121-148



LA


PLPXA_RICRI
UDP-N-ACETYLGLUCO-

RICKETTSIA RICKETTSII

 229-256



SAMINE ACYLTRANSFERASE


PLSPA_ECOLI
LIPOPROTEIN SIGNAL

ESCHERICHIA COLI

 10-37



PEPTIDASE


PLSPA_STAAU
LIPOPROTEIN SIGNAL

STAPHYLOCOCCUS AUREUS

 134-161



PEPTIDASE


PLUKF_STAAU
LEUKOCIDIN F SUBUNIT

STAPHYLOCOCCUS AUREUS

 161-195



PRECURSOR


PLUKS_STAAU
LEUKOCIDIN S SUBUNIT

STAPHYLOCOCCUS AUREUS

 157-207



PRECURSOR


PLUXA_KRYAL
ALKANAL MONOOXYGENASE

KRYPTOPHANARON ALFREDI

 190-217



ALPHA CHAIN


PLUXB_PHOPO
ALKANAL MONOOXYGENASE

PHOTOBACTERIUM

 188-217
 257-291



BETA CHAIN

PHOSPHOREUM



PLUXB_VIBHA
ALKANAL MONOOXYGENASE

VIBRIO HARVEYI

 373-400



BETA CHAIN


PLUXC_PHOLE
ACYL-COA REDUCTASE

PHOTOBACTERIUM LEIOGNATHI

 44-81


PLUXC_PHOPO
ACYL-COA REDUCTASE

PHOTOBACTERIUM

 54-91





PHOSPHOREUM



PLUXC_VIBFI
ACYL-COA REDUCTASE

VIBRIO FISCHERI

 16-65


PLUXC_XENLU
ACYL-COA REDUCTASE

XENORHABDUS LUMINESCENS

 39-69


PLUXD_PHOLE
ACYL TRANSFERASE

PHOTOBACTERIUM LEIOGNATHI

 89-119
 218-245


PLUXE_VIBHA
LUCIFERIN-COMPONENT

VIBRIO HARVEYI

 30-57



LIGASE


PLUXF_PHOLE
NON-FLUORESCENT FLAVO-

PHOTOBACTERIUM LEIOGNATHI

 145-172



PROTEIN


PLUXF_PHOPO
NON-FLUORESCENT FLAVO-

PHOTOBACTERIUM

 37-85
 99-126



PROTEIN

PHOSPHOREUM



PLUXG_VIBFI
PROBABLE FLAVIN

VIBRIO FISCHERI

 137-168



REDUCTASE


PLUXH_VIBHA
LUXH PROTEIN

VIBRIO HARVEYI

 96-123


PLUXI_VIBFI
OHHL SYNTHESIS PROTEIN

VIBRIO FISCHERI

 30-58



LUXI


PLUXJ_VIBFI
OHHL SYNTHESIS PROTEIN

VIBRIO FISCHERI

 30-57



LUXI


PLUXP_PHOPO
LUMAZINE PROTEIN

PHOTOBACTERIUM

 51-85
 162-189





PHOSPHOREUM



PLUXR_VIBHA
LUXR REGULATORY PROTEIN

VIBRIO HARVEYI

 61-88


PLXB1_PHOLE
ALKANAL MONOOXYGENASE

PHOTOBACTERIUM LEIOGNATHI

 268-295



BETA CHAIN


PLXB2_PHOLE
ALKANAL MONOOXYGENASE

PHOTOBACTERIUM LEIOGNATHI

 228-255



BETA CHAIN


PLYB_BACSU
B-ENZYME

BACILLUS SUBTILIS

 87-114


PLYC_CLOAB
AUTOLYTIC LYSOZYME

CLOSTRIDIUM ACETOBUTYLICUM

 91-118


PLYSP_ECOLI
LYSINE-SPECIFIC PERMEASE

ESCHERICHIA COLI

 142-176


PLYTB_BACSU
AMIDASE ENHANCER

BACILLUS SUBTILIS

 55-82
 150-177
 467-513
 555-585



PRECURSOR


PLYTB_ECOLI
LYTB PROTEIN

ESCHERICHIA COLI

 210-237


PLYTC_BACSU
AMIDASE PRECURSOR

BACILLUS SUBTILIS

 179-213
 225-252


PLYTR_BACSU
MEMBRANE-BOUND PROTEIN

BACILLUS SUBTILIS

 13-64
 259-303



LYTR


PM12_STRPY
M PROTEIN, SEROTYPE 12

STREPTOCOCCUS PYOGENES

 46-92
 114-156
 191-300
 305-342
 383-417
 436-494



PRECURSOR


PM24_STRPY
M PROTEIN, SEROTYPE 24

STREPTOCOCCUS PYOGENES

 12-46
 89-128
 175-202
 245-272
 280-313
 399-457



PRECURSOR


PM49_STRPY
M PROTEIN, SEROTYPE 49

STREPTOCOCCUS PYOGENES

 12-174
 269-327



PRECURSOR


PM5_STRPY
M PROTEIN, SEROTYPE 5

STREPTOCOCCUS PYOGENES

  5-39
 56-263
 306-333
 352-410



PRECURSOR


PM6_STRPY
M PROTEIN, SEROTYPE 6

STREPTOCOCCUS PYOGENES

 12-39
 70-282
 290-324
 343-401



PRECURSOR


PMALE_ECOLI
MALTOSE-BINDING PROTEIN

ESCHERICHIA COLI

 20-47



PRECURSOR


PMALE_ENTAE
MALTOSE-BINDING PROTEIN

ENTEROBACTER AEROGENES

 20-47



PRECURSOR


PMALK_ENTAE
INNER MEMBRANE PROTEIN

ENTEROBACTER AEROGENES

  3-30



MALK


PMALT_ECOLI
MALT REGULATORY PROTEIN

ESCHERICHIA COLI

 852-879


PMALX_STRPN
MALX PROTEIN PRECURSOR

STREPTOCOCCUS PNEUMONIAE

 40-67
 180-207


PMANB_BACSM
1,4-BETA-MANNOSIDASE A

BACILLUS SP
 410-441



AND B PREC


PMANB_CALSA
B-MANNANASE/ENDO-

CALDOCELLUM

 389-423
 592-626
1222-1256
1296-1323



GLUCANASE A PREC

SACCHAROLYTICUM



PMAOX_BACST
MALATE OXIDOREDUCTASE

BACILLUS STEAROTHERMOPHILUS

 246-273


PMARR_ECOLI
ANTIBIOTIC RESISTANCE

ESCHERICHIA COLI

 95-122



PROTEIN MARR


PMBEB_ECOLI
MOBILIZATION PROTEIN

ESCHERICHIA COLI

 38-65
 100-134



MBEB


PMBHL_WOLSU
QUINONE-REAC NI/FE-

WOLINELLA SUCCINOGENES

 440-471



HYDROGENASE


PMCBB_ECOLI
MCBB PROTEIN

ESCHERICHIA COLI

 47-74
 122-163


PMCBD_ECOLI
MCBD PROTEIN

ESCHERICHIA COLI

 172-206
 226-253
 306-345


PMCP1_ECOLI
METHYL-ACCEPTING

ESCHERICHIA COLI

 272-299



CHEMOTAXIS PROTEIN I


PMCP2_ECOLI
METHYL-ACCEPTING

ESCHERICHIA COLI

 258-306



CHEMOTAXIS PROTEIN II


PMCP2_SALTY
METHYL-ACCEPTING

SALMONELLA TYPHIMURIUM

 258-306



CHEMOTAXIS PROTEIN II


PMCP3_ECOLI
METHYL-ACCEPTING

ESCHERICHIA COLI

 288-315



CHEMOTAXIS PROTEIN III


PMCP4_ECOLI
METHYL-ACCEPTING

ESCHERICHIA COLI

 111-145
 164-191
 277-304



CHEMOTAXIS PROTEIN IV


PMCPA_CAUCR
CHEMORECEPTOR MCPA

CAULOBACTER CRESCENTUS

 260-287
 369-403
 516-543


PMCPC_SALTY
CHEMOTAXIS CITRATE

SALMONELLA TYPHIMURIUM

 314-348



TRANDUCER


PMCPD_ENTAE
CHEMOTAXIS ASPARTATE

ENTEROBACTER AEROGENES

 275-302



TRANSDUCER


PMCPS_ENTAE
CHEMOTAXIS SERINE

ENTEROBACTER AEROGENES

 41-68
 158-208
 317-351
 488-522



TRANSDUCER


PMCRA_ECOLI
SPECIFIC RESTRICTION

ESCHERICHIA COLI

 37-71



ENZYME A


PMCRA_METBA
METHYL-COENZYME M

METHANOSARCINA BARKERI

 375-405



REDUCTASE


PMCRA_METVA
METHYL-COENZYME M

METHANOCOCCUS VANNIELII

 335-362



REDUCTASE


PMCRA_METVO
METHYL-COENZYME M

METHANOCOCCUS VOLTAE

 336-363



REDUCTASE


PMCRB_METFE
METHYL-COENZYME M

METHANOTHERMUS FERVIDUS

 267-294



REDUCTASE


PMCRB_METVO
METHYL-COENZYME M

METHANOCOCCUS VOLTAE

 247-274



REDUCTASE


PMCRC_ECOLI
MCRC PROTEIN

ESCHERICHIA COLI

 111-145


PMCRD_METVO
REDUCTASE OPERON

METHANOCOCCUS VOLTAE

 54-91



PROTEIN D


PMDH_ECOLI
MALATE DEHYDROGENASE

ESCHERICHIA COLI

 127-154


PMDH_METFE
MALATE DEHYDROGENASE

METHANOTHERMUS FERVIDUS

 54-88


PMDH_SALTY
MALATE DEHYDROGENASE

SALMONELLA TYPHIMURIUM

 127-154


PMDL_ECOLI
MDL PROTEIN

ESCHERICHIA COLI

 464-491
 684-711
 992-1019


PMDOH_ECOLI
BIOSYNTHESIS PROTEIN

ESCHERICHIA COLI

 119-152



MDOH


PMECI_STAEP
METHICILLIN RESIS REG

STAPHYLOCOCCUS EPIDERMIDIS &
 88-122



PROTEIN MECI

AUREUS



PMECR_STAEP
METHICILLIN RESISTANCE

STAPHYLOCOCCUS EPIDERMIDIS &
 439-495
 546-573



MECR1 PROTEIN

AUREUS



PMEMB_METCA
METHANE MONOOXYGENASE

METHYLOCOCCUS CAPSULATUS

 214-248



COMPONENT A


PMEMB_METTR
METHANE MONOOXYGENASE

METHYLOSINUS TRICHOSPORIUM

 321-348



COMPONENT A


PMEND_ECOLI
SHCHC SYNTHASE

ESCHERICHIA COLI

 333-367


PMER4_STRLI
PROBABLE HG TRANSPORT

STREPTOMYCES LIVIDANS

 159-186



PROTEIN


PMERA_BACSR
MERCURIC REDUCTASE

BACILLUS SP
 146-180


PMERA_STAAU
MERCURIC REDUCTASE

STAPHYLOCOCCUS AUREUS

 292-347
 352-386


PMERR_STAAU
MERCURIC RESISTANCE

STAPHYLOCOCCUS AUREUS

 86-113



OPERON REG PROTEIN


PMETB_ECOLI
CYSTATHIONINE GAMMA-

ESCHERICHIA COLI

 356-383



SYNTHASE


PMETC_ECOLI
CYSTATHIONINE BETA-

ESCHERICHIA COLI

 363-390



LYASE


PMETC_SALTY
CYSTATHIONINE BETA-

SALMONELLA TYPHIMURIUM

  2-29



LYASE


PMETE_ECOLI
METHIONINE SYNTHASE

ESCHERICHIA COLI

 448-482


PMETH_ECOLI
METHIONINE SYNTHASE

ESCHERICHIA COLI

 371-398
 642-676


PMFD_ECOLI
TRANSCRIPTION-REPAIR

ESCHERICHIA COLI

 185-212



COUPLING FACTOR


PMGLA_ECOLI
GALACTOSIDE-BINDING

ESCHERICHIA COLI

 62-89
 312-380



PROTEIN


PMINC_BACSU
SEPTUM SITE-DETERMINING

BACILLUS SUBTILIS

 65-122



PROTEIN MINC


PMIOC_ECOLI
MIOC PROTEIN

ESCHERICHIA COLI

 102-129


PM1P_CHLTR
27 KD MEMBRANE PROTEIN

CHLAMYDIA TRACHOMATIS

 41-75



PRECURSOR


PM1P_LEGMI
OUTER MEMBRANE PROTEIN

LEGIONELLA MICDADEI

 106-133



MIP PRECURSOR


PMLS1_ENTFA
RRNA ADENINE N-6-METHYL-

ENTEROCOCCUS FAECALIS

  4-81
 120-154



TRANSFERASE


PMLS1_STAAU
RRNA ADENINE N-6-METHYL-

STAPHYLOCOCCUS AUREUS

  9-47



TRANSFERASE


PMLS2_ENTFA
RRNA ADENINE N-6-METHYL-

ENTEROCOCCUS FAECALIS

  4-81
 120-154



TRANSFERASE


PMLSB_BACFR
RRNA ADENINE N-6-METHYL-

BACTEROIDES FRAGILIS

 16-43



TRANSFERASE


PMLSB_ECOLI
RRNA ADENINE N-6-METHYL-

ESCHERICHIA COLI

  4-81
 120-154



TRANSFERASE


PMLSB_STRPN
RRNA ADENINE N-6-METHYL-

STREPTOCOCCUS PNEUMONIAE

  4-81
 120-154



TRANSFERASE


PMLSB_STRSA
RRNA ADENINE N-6-METHYL-

STREPTOCOCCUS SANGUIS

  4-81
 120-154



TRANSFERASE


PMLSC_BACFR
RRNA ADENINE N-6-METHYL-

BACTEROIDES FRAGILIS

 16-43



TRANSFERASE


PMMOB_METC
METHANE MONOOXYGENASE

METHYLOCOCCUS CAPSULATUS

 34-64



REG PROTEIN B


PMOAB_ECOLI
MOLYBD COFAC BIOSYN

ESCHERICHIA COLI

 49-76



PROTEIN B


PMOBA_THIFE
MOBA PROTEIN

THIOBACILLUS FERROOXIDANS

 94-121
 251-278


PMOBC_THIFE
MOBC PROTEIN

THIOBACILLUS FERROOXIDANS

 20-47


PMOBD_THIFE
MOBC PROTEIN

THIOBACILLUS FERROOXIDANS

 95-132


PMOB_ECOLI
MOB PROTEIN

ESCHERICHIA COLI

 45-72


PMOEA_ECOLI
MOLYBDOPTERIN BIO-

ESCHERICHIA COLI

 243-270



SYNTHESIS MOEA PROTEIN


PMOP1_CLOPA
MOLYBDENUM-PTERIN

CLOSTRIDIUM PASTEURIANUM

 26-53



BINDING PROTEIN I


PMOP2_CLOPA
MOLYBDENUM-PTERIN

CLOSTRIDIUM PASTEURIANUM

 26-64



BINDING PROTEIN II


PMOXY_PARDE
METHANOL UTIL CONT

PARACOCCUS DENITRIFICANS

 200-234
 307-334



PROTEIN MOXY


PMPEU_SYNPY
BILIN BIOSYNTHESIS

SYNECHOCOCCUS SP
  2-36
 80-107
 198-225



PROTEIN MPEU


PMPEV_SYNPY
BILIN BIOSYNTHESIS

SYNECHOCOCCUS SP
  2-31
 175-216


PMPRA_ECOLI
MPRA PROTEIN

ESCHERICHIA COLI

 136-163


PMRAY_BACSU
PENTAPEPTIDE-

BACILLUS SUBTILIS

 106-133
 247-281



TRANSFERASE


PMREB_BACCE
ROD SHAPE-DETERMINING

BACILLUS CEREUS

 186-213



PROTEIN MREB


PMREC_BACSU
ROD SHAPE-DETERMINING

BACILLUS SUBTILIS

 65-112



PROTEIN MREC


PMRKB_KLEPN
CHAPERONE PROTEIN MRKB

KLEBSIELLA PNEUMONIAE

 198-232



PRECURSOR


PMRKC_KLEPN
MRKC PROTEIN PRECURSOR

KLEBSIELLA PNEUMONIAE

 55-82
 452-489
 592-622


PMRKD_KLEPN
FIMBRIA ADHESION PROTEIN

KLEBSIELLA PNEUMONIAE

 222-268



PRECURSOR


PMRKE_KLEPN
MRKE PROTEIN

KLEBSIELLA PNEUMONIAE

 193-220


PMRP4_STRPY
FIBRINOGEN-/IG-BINDING

STREPTOCOCCUS PYOGENES

  7-46
 99-310



PROTEIN PRECURSOR


PMRP_STRSU
MURAMIDASE-RELEASED

STREPTOCOCCUS SUIS

 75-102
 130-177
 261-291
 421-448
 507-534
 588-622
 773-800
1058-1085



PROTEIN PRECURSOR


PMSBA_ECOLI
PROB ATP-BINDING

ESCHERICHIA COLI

 116-150
 412-449



TRANSPORT PROTEIN MSBA


PMSRA_STAEP
ERYTHROMYCIN RESISTANCE

STAPHYLOCOCCUS EPIDERMIDIS

 174-223
 323-350



PROTEIN


PMSYB_ECOLI
ACIDIC PROTEIN MSYB

ESCHERICHIA COLI

 73-100


PMT57_ECOLI
MODIFICATION METHYLASE

ESCHERICHIA COLI

 250-284
 474-544



ECO571


PMTA1_ACICA
MODIFICATION METHYLASE

ACINETOBACTER CALCOACETICUS

 503-540



ACCI


PMTAB_SYNP2
MODIFICATION METHYLASE

SYNECHOCOCCUS SP
 19-46



AQUI BETA SUBUNIT


PMTB1_BREEP
MODIFICATION METHYLASE

BREVIBACTERIUM EPIDERMIDIS

 166-200
 309-336



BEPI


PMTB1_HERAU
MODIFICATION METHYLASE

HERPETOSIPHON AURANTIACUS

 281-308



HGIBI


PMTB2_BACAM
MODIFICATION METHYLASE

BACILLUS AMYLOLIQUEFACIENS

 35-62



BAMHII


PMTB3_BACAR
MODIFICATION METHYLASE

BACILLUS ANEURINOLYTICUS

 184-211



BANIII


PMTBA_BACAR
MODIFICATION METHYLASE

BACILLUS ANEURINOLYTICUS

 121-148
 382-409



BANI


PMTBB_BACSU
MODIFICATION METHYLASE

BACILLUS SUBTILIS

 231-258
 467-496



BSUBI


PMTBF_BACSU
MODIFICATION METHYLASE

BACILLUS SUBTILIS

 208-235



BSUFI


PMTC1_CITFR
MODIFICATION METHYLASE

CITROBACTER FREUNDII

  2-36
 55-82
 252-279



CFRBI


PMTC1_HERAU
MODIFICATION METHYLASE

HERPETOSIPHON AURANTIACUS

 120-147



HGICI


PMTC2_HERAU
MODIFICATION METHYLASE

HERPETOSIPHON AURANTIACUS

 281-311



HGICII


PMTE1_ECOLI
MODIFICATION METHYLASE

ESCHERICHIA COLI

 76-110
 145-172



ECORI


PMTE1_HERAU
MODIFICATION METHYLASE

HERPETOSIPHON AURANTIACUS

 281-308



HGIEI


PMTE2_ECOLI
MODIFICATION METHYLASE

ESCHERICHIA COLI

  4-61



ECORII


PMTE5_ECOLI
MODIFICATION METHYLASE

ESCHERICHIA COLI

 73-100



ECO RV


PMTEC_ENTCL
MODIFICATION METHYLASE

ENTEROBACTER CLOACAE

 418-445



ECIA


PMTF1_FLAOK
MODIFICATION METHYLASE

FLAVOBACTERIUM OKEANOKOITES

 184-211
 279-306
 337-366
 398-425
 555-646



FOKI


PMTF1_FUSNU
MODIFICATION METHYLASE

FUSOBACTERIUM NUCLEATUM

 22-49



FNUDI


PMTG2_HAEGA
MODIFICATION METHYLASE

HAEMOPHILUS GALLINARUM

 135-165



HGAI-2


PMTH2_HAEIN
MODIFICATION METHYLASE

HAEMOPHILUS INFLUENZAE

 181-208
 399-426



HINCII


PMTHZ_METTF
MODIFICATION METHYLASE

METHANOBACTERIUM

 188-215
 296-323



MTHZI

THERMOFORMICICUM



PMTK1_KLEPN
MODIFICATION METHYLASE

KLEBSIELLA PNEUMONIAE

 270-297



KPNI


PMTLD_STRMU
MANNITOL-1-PHOSPHATE 5-

STREPTOCOCCUS MUTANS

 39-66
 224-258
 349-376



DEHYDROGENASE


PMTM1_MORSP
MODIFICATION METHYLASE

MORAXELLA SP
  5-39
 49-104



MSPI


PMTN3_NEILA
MODIFICATION METHYLASE

NEISSERIA LACTAMICA

 124-158
 183-210



NLAIII


PMTP2_PROVU
MODIFICATION METHYLASE

PROTEUS VULGARIS

 308-335



PVU II


PMTPG_SULAC
MEMBRANE-ASSOCIATED

SULFOLOBUS ACIDOCALDARIUS

  9-67



ATPASE


PMTPS_PROST
MODIFICATION METHYLASE

PROVIDENCIA STUARTII

 226-264



PSTI


PMTR_ECOLI
TRYPTOPHAN-SPECIFIC

ESCHERICHIA COLI

 80-107



TRANSPORT PROTEIN


PMTS1_STRSA
MODIFICATION METHYLASE

STREPTOCOCCUS SANGUIS

 116-153
 434-461
 600-645



STSI


PMTS2_SHISO
MODIFICATION METHYLASE

SHIGELLA SONNEI

 81-108



SSOII


PMTS9_STAAU
MODIFICATION METHYLASE

STAPHYLOCOCCUS AUREUS

 233-274



SAU96I


PMTSA_LACLC
MODIFICATION METHYLASE

LACTOCOCCUS LACTIS

 88-115
 187-214



SCRFI-A


PMTSB_LACLC
MODIFICATION METHYLASE

LACTOCOCCUS LACTIS

 27-61



SCRFI-B


PMTS1_SPISQ
CPG DNA METHYLASE

SPIROPLASMA SP
 188-230
 256-290


PMTSM_SERMA
MODIFICATION METHYLASE

SERRATIA MARCESCENS

 61-88



SMAI


PMTT8_THETH
MODIFICATION METHYLASE

THERMUS AQUATICUS

 120-157



TTHHB8I


PMTV1_VIBS3
MODIFICATION METHYLASE

VIBRIO SP
 23-66



VSPI


PMUKB_ECOLI
MUKB PROTEIN

ESCHERICHIA COLI

 320-381
1014-1048
1216-1252


PMULI_ERWAM
MAJOR OUTER MEMBRANE

ERWINIA AMYLOVORA

 24-54



LIPOPROTEIN PREC


PMULI_MORMO
MAJOR OUTER MEMBRANE

MORGANELA MORGANII

 27-54



LIPOPROTEIN PREC


PMULI_PROMI
MAJOR OUTER MEMBRANE

PROTEUS MIRABILIS

 21-63



LIPOPROTEIN PREC


PMURD_BACSU
UDP-LIGASE

BACILLUS SUBTILIS

 101-132
 299-326


PMURE_ECOLI
LIGASE

ESCHERICHIA COLI

 107-134


PMURF_ECOLI
UDP-MURNAC-PENTAPEPTIDE

ESCHERICHIA COLI

 407-437



SYNTHETASE


PMURZ_ECOLI
ENOYLPYRUVATE

ESCHERICHIA COLI

 392-419



TRANSFERASE


PMURZ_ENTCL
ENOYLPYRUVATE

ENTEROBACTER CLOACAE

 392-419



TRANSFERASE


PMUTA_STRCM
METHYLMALONYL-COA

STREPTOMYCES CINNAMONENSIS

 31-58



MUTASE BETA-SUBUNIT


PMUTB_PROFR
METHYLMALONYL-COA

PROPIONIBACTERIUM

 549-576



MUTASE ALPHA-SUBUNIT

FREUDENREICHII



PMUTB_SALTY
/G-SPECIFIC ADENINE

SALMONELLA TYPHIMURIUM

 273-300



GLYCOSYLASE


PMUTB_STRCM
METHYLMALONYL-COA

STREPTOMYCES CINNAMONENSIS

 481-508



MUTASE ALPHA-SUBUNIT


PMUTL_ECOLI
DNA MISMATCH REPAIR

ESCHERICHIA COLI

 80-114



PROTEIN MUTL


PMUTL_SALTY
DNA MISMATCH REPAIR

SALMONELLA TYPHIMURIUM

 80-114



PROTEIN MUTL


PMUTL_VIBCH
PROTEIN MUTL

VIBRIO CHOLERAE

 134-169


PMUTS_ECOLI
DNA MISMATCH REPAIR

ESCHERICHIA COLI

 119-153



PROTEIN MUTS


PMUTT_STRAM
MUTT-LIKE PROTEIN

STREPTOMYCES AMBOFACIENS

 60-87


PMVAA_PSEMV
COENZYME A REDUCTASE

PSEUDOMONAS MEVALONII

 341-368


PMX_STRPY
M-RELATED PROTEIN

STREPTOCOCCUS PYOGENES

  5-129
 148-182
 190-217
 240-301



PRECURSOR


PMYCO_STRCI
MYCOLYSIN PRECURSOR

STREPTOMYCES CACAOI

 300-352


PMYFC_YEREN
MYFC PROTEIN PRECURSOR

YERSINIA ENTEROCOLITICA

 210-237


PNADC_SALTY
NICOTINATE-NUCLEOTIDE

SALMONELLA TYPHIMURIUM

 123-154
 255-289



PYROPHOSPHORYLASE


PNADR_SALTY
TRANSCRIPTIONAL

SALMONELLA TYPHIMURIUM

 233-260



REGULATOR NADR


PNAGD_ECOLI
NAGD PROTEIN

ESCHERICHIA COLI

 75-102


PNAGH_CLOPE
HYALURONOGLUCOS-

CLOSTRIDIUM PERFRINGENS

 48-75
 990-1017



AMINIDASE


PNAGR_ECOLI
NAGR PROTEIN

ESCHERICHIA COLI

 119-153


PNANH_CLOSE
SIALIDASE PRECURSOR

CLOSTRIDIUM SEPTICUM

 11-42
 289-330
 922-988


PNANH_CLOSO
SIALIDASE PRECURSOR

CLOSTRIDIUM SORDELLII

 377-404


PNANH_SALTY
SIALIDASE

SALMONELLA TYPHIMURIUM

 290-317


PNAPA_ENTHR
NA(+)/H(+) ANTIPORTER

ENTEROCOCCUS HIRAE

 116-150


PNARG_ECOLI
RESPIRATORY NITRATE

ESCHERICHIA COLI

 386-420



REDUCTASE ALPHA CHAIN


PNARL_ECOLI
REGULATOR PROTEIN NARL

ESCHERICHIA COLI

 76-103


PNARP_ECOLI
REGULATOR PROTEIN NARP

ESCHERICHIA COLI

 155-189


PNARX_ECOLI
NITRATE/NITRITE SENSOR

ESCHERICHIA COLI

 220-247
 358-385
 431-458
 505-538



PROTEIN NARX


PNDVA_RHIME
BETA-(1→2)GLUCAN EXPORT

RHIZOBIUM MELILOTI

 212-239



PROTEIN


PNEOR_STRCY
NEOMYCIN RESISTANCE

STREPTOMYCES CYANOGENUS

 348-375



PROTEIN


PNEUA_ECOLI
ACYLNEURAMINATE

ESCHERICHIA COLI

 218-252
 268-298



CYTIDYLYLTRANSFERASE


PNFRA_ECOLI
N4 ADSORPTION PROTEIN A

ESCHERICHIA COLI

 490-517



PRECURSOR


PNFRB_ECOLI
N4 ADSORPTION PROTEIN B

ESCHERICHIA COLI

  2-43
 186-220
 511-538


PNFRC_ECOLI
N4 ADSORPTION PROTEIN C

ESCHERICHIA COLI

 315-342


PNFSI_ENTCL
NAD(P)H NITROREDUCTASE

ENTEROBACTER CLOACAE

  9-36


PNHAA_ECOLI
NA(+)/H(+) ANTIPORTER 1

ESCHERICHIA COLI

 206-233


PNHAB_ECOLI
NA(+)/H(+) ANTIPORTER 2

ESCHERICHIA COLI

 271-305


PNHAB_PSECL
NITRILE HYDRATASE

PSEUDOMONAS CHLORORAPHIS

 71-101



SUBUNIT BETA


PNHB1_RHORH
NITRILE HYDRATASE

RHODOCOCCUS RHODOCHROUS

 63-93



SUBUNIT BETA


PNIFA_AZOBR
NIF-SPECIFIC REGULATORY

AZOSPIRILLUM BRASILENSE

  7-44



PROTEIN


PNIFA_BRAJA
NIF-SPECIFIC REGULATORY

BRADYRHIZOBIUM JAPONICUM

 252-279



PROTEIN


PNIFA_HERSE
NIF-SPECIFIC REGULATORY

HERBASPIRILLUM SEROPEDICAE

  9-51
 162-203
 327-354



PROTEIN


PNIFA_RHILE
NIF-SPECIFIC REGULATORY

RHIZOBIUM LEGUMINOSARUM

 100-127



PROTEIN


PNIFA_RHIME
NIF-SPECIFIC REGULATORY

RHIZOBIUM MELILOTI

 171-198



PROTEIN


PNIFA_RHOCA
NIF-SPECIFIC REGULATORY

RHODOBACTER CAPSULATUS

 260-287



PROTEIN


PNIFB_AZOVI
NIFB PROTEIN

AZOTOBACTER VINELANDII

 342-369


PNIFB_KLEPN
NIFB PROTEIN

KLEBSIELLA PNEUMONIAE

 154-181


PNIFD_ANASP
NITROG MOLYBD-IRON

ANABAENA SP
 374-401



PROTEIN


PNIFD_AZOBR
NITROG MOLYBD-IRON

AZOSPIRILLUM BRASILENSE

 377-404



PROTEIN


PNIFD_PLEBO
NITROG MOLYBD-IRON

PLECTONEMA BORYANUM

 387-414



PROTEIN


PNIFD_THIFE
NITROG MOLYBD-IRON

THIOBACILLUS FERROOXIDANS

 383-410



PROTEIN


PNIFE_CLOPA
BIOSYNTHESIS PROTEIN NIFE

CLOSTRIDIUM PASTEURIANUM

 359-386


PNIFH_FRAGR
NITROGENASE IRON PROTEIN

FRANKIA SP
 56-83


PNIFH_PLEBO
NITROGENASE IRON PROTEIN

PLECTONEMA BORYANUM

 267-294


PNIFK_AZOBR
NITROG MOLYBD-IRON

AZOSPIRILLUM BRASILENSE

 430-457



PROTEIN


PNIFK_BRAJA
NITROG MOLYBD-IRON

BRADYRHIZOBIUM JAPONICUM

 483-510



PROTEIN


PNIFK_BRASP
NITROG MOLYBD-IRON

BRADYRHIZOBIUM SP
 478-505



PROTEIN


PNIFK_CLOPA
NITROG MOLYBD-IRON

CLOSTRIDIUM PASTEURIANUM

 227-254



PROTEIN


PNIFK_THIFE
NITROG MOLYBD-IRON

THIOBACILLUS FERROOXIDANS

 479-506



PROTEIN


PNIFM_AZOCH
NIFM PROTEIN

AZOTOBACTER CHROOCOCCUM

 265-292




MCD 1


PNIFN_BRAJA
BIOSYNTHESIS PROTEIN

BRADYRHIZOBIUM JAPONICUM

 339-366



NIFN


PNIFS_ANASP
NIFS PROTEIN

ANABAENA SP
 112-139


PNIFS_LACDE
NIFS PROTEIN HOMOLOG

LACTOBACILLUS DELBRUECKII

 59-86


PNIFT_AZOVI
NIFT PROTEIN

AZOTOBACTER VINELANDII

  6-33


PNIFU_ANASL
NIFU PROTEIN

ANABAENA SP
  7-49


PNIFU_ANASP
NIFU PROTEIN

ANABAENA SP
 148-178


PNIFU_KLEPN
NIFU PROTEIN

KLEBSIELLA PNEUMONIAE

 66-93


PNIKA_ECOLI
NICKEL TRANSPORT PROTEIN

ESCHERICHIA COLI

 122-149
 282-309
 456-483



NIKA PRECURSOR


PNIKE_ECOLI
NICKEL TRANSPORT PROTEIN

ESCHERICHIA COLI

 177-204



NIKE


PNIRB_ECOLI
NITRITE REDUCTASE

ESCHERICHIA COLI

 54-81
 345-372


PNIRC_ECOLI
NIRC PROTEIN

ESCHERICHIA COLI

 212-239


PNIRS_PSEST
PSEUDOMONAS CYTO-

PSEUDOMONAS STUTZERI

 303-333



CHROME OXIDASE PRECURSO


PNISB_LACLA
117 KD MEMBRANE

LACTOCOCCUS LACTIS

 202-229
 287-332
 663-697
 886-902



ASSOCIATED PROTEIN


PNISC_LACLA
NISIN BIOSYNTHESIS

LACTOCUCCUS LACTIS

 52-92
 140-188



PROTEIN NISC


PNIST_LACLA
NISIN TRANSPORT PROTEIN

LACTOCOCCUS LACTIS

 223-257
 278-305
 426-470



NIST


PNIVA_CLOPA
HOMOCITRATE SYNTHASE,

CLOSTRIDIUM PASTEURIANUM

 100-127
 234-268



ALPHA SUBUNIT


PNIVO_CLOPA
HOMOCITRATE SYNTHASE,

CLOSTRIDIUM PASTEURIANUM

 63-94
 103-132
 213-240
 283-310



OMEGA SUBUNIT


PNMPC_ECOLI
PORIN PROTEIN NMPC

ESCHERICHIA COLI

 22-49
 69-96
 335-362



PRECURSOR


PNODC_BRASP
NODULATION PROTEIN C

BRADYRHIZOBIUM SP
  3-30


PNODC_RHILO
NODULATION PROTEIN C

RHIZOBIUM LOTI

 286-313


PNODC_RHILT
NODULATION PROTEIN C

RHIZOBIUM LEGUMINOSARUM

 14-48


PNODF_RHILV
NODULATION PROTEIN F

RHIZOBIUM LEGUMINOSARUM

 31-58


PNODF_RHIMS
NODULATION PROTEIN F

RHIZOBIUM MELILOTI

 39-66


PNODG_RHIME
NODULATION PROTEIN G

RHIZOBIUM MELILOTI

  8-35


PNODG_RHIMS
NODULATION PROTEIN G

RHIZOBIUM MELILOTI

  8-35


PNODL_RHILV
NODULATION PROTEIN L

RHIZOBIUM LEGUMINOSARUM

 26-53


PNODQ_AZOBR
NODULATION PROTEIN Q

AZOSPIRILLUM BRASILENSE

 60-87


PNODT_RHILT
NODULATION PROTEIN T

RHIZOBIUM LEGUMINOSARUM

 104-134
 355-382
 420-454


PNODT_RHILV
NODULATION PROTEIN T

RHIZOBIUM LEGUMINOSARUM

 364-391
 416-443


PNODU_RHIFR
NODULATION PROTEIN U

RHIZOBIUM FREDII

 506-536


PNODV_BRAJA
NODULATION PROTEIN V

BRADYRHIZOBIUM JAPONICUM

 378-419
 739-766


PNODX_RHILV
NODULATION PROTEIN X

RHIZOBIUM LEGUMINOSARUM

 232-259


PNOLB_RHIFR
NODULATION PROTEIN NOLB

RHIZOBIUM FREDII

 133-160


PNOLR_RHIME
NODULATION PROTEIN NOLR

RHIZOBIUM MELILOTI

 88-115


PNOSD_PSEST
NOSD PROTEIN PRECURSOR

PSEUDOMONAS STUTZERI

 319-346


PNOSR_PSEST
REGULATORY PROTEIN NOSR

PSEUDOMONAS STUTZERI

 127-154


PNOSZ_PSEAE
NITROUS-OXIDE REDUCTASE

PSEDOMONAS AERUGINOSA

 267-294



PRECURSOR


PNOSZ_PSEST
NITROUS-OXIDE REDUCTASE

PSEUDOMONAS STUTZERI

 557-591



PRECURSOR


PNPRE_BACAM
BACILLOLYSIN PRECURSOR

BACILLUS AMLOLIQUEFACIENS

 113-147
 217-244


PNPRE_BACPO
BACILLOLYSIN PRECURSOR

BACILLUS POLYMYXA

 57-91
 187-228


PNPRE_BACSU
BACILLOLYSIN PRECURSOR

BACILLUS SUBTILIS

 116-146
 307-334


PNQO5_PARDE
NADH-UBIQUINONE

PARACOCCUS DENITRIFICANS

  4-45



OXIDOREDUCTASE 21 KD



CHAI


PNQO9_PARDE
NADH-UBIQUINONE

PARACOCCUS DENITRIFICANS

 125-152



OXIDOREDUC 20 KD CHAIN


PNRDD_ECOLI
ANAER RIBONUC-TRIPHOS

ESCHERICHIA COLI

 91-125



REDUCTASE


PNRFA_ECOLI
CYTOCHROME C552

ESCHERICHIA COLI

 319-346



PRECURSOR


PNRFG_ECOLI
NRFG PROTEIN

ESCHERICHIA COLI

 72-111


PNRL1_RHORH
ALIPHATIC NITRILASE

RHODOCOCCUS RHODOCHROUS

 109-136


PNSR_LACLA
NISIN-RESISTANCE PROTEIN

LACTOCOCCUS LACTIS

 52-79
 135-162


PNTCA_ANASP
DNA-BINDING PROTEIN VF1

ANABAENA SP
 65-92


PNTCA_SYNP7
GLOBAL NITROGEN

SYNECHOCOCCUS SP
 44-91



REGULATOR


PNTCA_SYNP3
GLOBAL NITROGEN

SYNECHOCYSTIS SP
 67-94



REGULATOR


PNTRB_VIBAL
NITROGEN REGULATION

VIBRIO ALGINOLYTICUS

 194-223



PROTEIN NTRB


PNTRC_PROVU
NITROGEN REGULATION

PROTEUS VULGARIS

 385-412



PROTEIN NR


PNTRC_RHIME
NITROGEN ASSIMILATION

RHIZOBIUM MELILOTI

 451-478



REGULATORY PROTEIN


PNU2C_SYNP7
NADH-PLASTOQUINONE

SYNECHOCOCCUS SP
 80-107



OXIDOREDUCTASE CHAIN


PNU4C_SYNY3
NADH-PLASTOQUINONE

SYNECHOCYSTIS SP
 27-54



OXIDOREDUCTASE CHAIN


PNU5C_SYNP2
NADH-PLASTOQUINONE

SYNECHOCOCCUS SP
 614-641



OXIDOREDUCTASE CHAIN


PNUJC_SYNY3
PROB NADH-UBIQUINONE

SYNECHOCYSTIS SP
 163-190



OXIDOREDUCTASE SUBU


PNUKC_SYNY3
PROB NADH-UBIQUINONE

SYNECHOCYSTIS SP
 169-199



OXIDOREDUCTASE SUBU


PNULX_SYNY3
NADH-PLASTOQUINONE

SYNECHOCYSTIS SP
 46-80



OXIDOREDUCTASE CHAIN


PNUOG_ECOLI
NADH DEHYDROGENASE I

ESCHERICHIA COLI

 368-402



CHAIN G


PNUOL_ECOLI
NADH DEHYDROGENASE I

ESCHERICHIA COLI

 30-57
 496-523



CHAIN L


PNUON_ECOLI
NADH DEHYDROGENASE I

ESCHERICHIA COLI

 392-419



CHAIN N


PNUPC_ECOLI
NUCLEOTIDE PERMEASE

ESCHERICHIA COLI

 13-43
 134-164
 356-383


PNUSA_ECOLI
NUSA PROTEIN

ESCHERICHIA COLI

 21-62


PNUSB_ECOLI
N UTILIZATION SUBSTANCE

ESCHERICHIA COLI

 17-65
 70-97



PROTEIN B


PNUSG_ECOLI
TRANSCRIPTION ANTI-

ESCHERICHIA COLI

 141-168



TERMINATION PROTEIN NUS


PNUSG_THEMA
TRANSCRIPTION ANTI-

THERMOTOGA MARITIMA

 203-230



TERMINATION PROTEIN NUS


PNYLB_FLASP
6-AMINOHEXANOATE-DIMER

FLAVOBACTERIUM SP
 223-250



HYDROLASE


PNYLC_FLASP
6-AMINOHEXANOATE-DIMER

FLAVOBACTERIUM SP
 223-250



HYDROLASE


PO16G_BACCE
OLIGO-1,6-GLUCOSIDASE

BACILLUS CEREUS

 301-328


POCCT_AGRT6
OCTOPINE-BINDING PROTEIN

AGROBACTERIUM TUMEFACIENS

 172-202



T PRECURSOR


PODO1_AZOVI
2-OXOGLUTARATE

AZOTOBACTER VINELANDII

 829-856



DEHYDROGENASE E1



COMPONE


PODO1_BACSU
2-OXOGLUTARATE

BACILLUS SUBTILIS

 487-524
 809-850



DEHYDROGENASE E1



COMPONE


PODO1_ECOLI
2-OXOGLUTARATE

ESCHERICHIA COLI

  6-33



DEHYDROGENASE E1



COMPONE


PODO2_BACSU
DIHYDROLIPOAMIDE SUC-

BACILLUS SUBTILIS

 30-60



TRANSF COMP


PODOB_PSEPU
2-OXOGLUTARATE

PSEUDOMONAS PUTIDA

 223-254



DEHYDROGENASE E1



COMPONE


PODP1_ECOLI
PYRUVATE DEHYDRO-

ESCHERICHIA COLI

 624-651



GENASE E1 COMPONENT


PODP2_AZOVI
DIHYDROLIPOAMIDE

AZOTOBACTER VINELANDII

 518-545



ACETRANS COMP


PODP2_ECOLI
DIHYDROLIPOAMIDE

ESCHERICHIA COLI

 14-41
 117-144



ACETRANS COMP


PODPA_BACST
PYRUVATE DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

 299-333



GENASE E1 COMPONENT


PODPA_BACSU
PYRUVATE DEHYDRO-

BACILLUS SUBTILIS

 305-332



GENASE E1 COMPONENT


PODPB_BACST
PYRUVATE DEHYDRO-

BACILLUS STEAROTHERMOPHILUS

 23-50



GENASE E1 COMPONENT


PODPB_BACSU
PYRUVATE DEHYDRO-

BACILLUS SUBTILIS

 16-50



GENASE E1 COMPONENT


POM1E_CHLTR
15 KD CYSTEINE-RICH

CHLAMYDIA TRACHOMATIS

 38-65



PROTEIN, SEROVAR E


POMA1_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

 63-90



P1 A PRECURSOR


POMA1_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

 359-386



P1 A PRECURSOR


POMA2_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

 353-380



P1 A PRECURSOR


POMB1_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

 63-90



P 1B PRECURSOR


POMB1_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

 63-90



P.IB PRECURSOR


POMB2_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

 63-90



P.IB PRECURSOR


POMB2_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

 63-90



P.IB PRECURSOR


POMB3_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

 63-90



P.IB PRECURSOR


POMB4_NEIME
OUTER MEMBRANE PROTEIN

NEISSERIA MENINGITIDIS

 24-51
 63-90



P.IB PRECURSOR


POMB_NEILA
OUTER MEMBRANE PROTEIN

NEISSERIA LACTAMICA

 116-143



P.IB PRECURSOR


POMB_NEISI
OUTER MEMBRANE PROTEIN

NEISSERIA SICCA

 24-51
 63-90



P.IB PRECURSOR


POMLA_ACTPL
OUTER MEMBRANE LIPO-

ACTINOBACILLUS

 114-151



PROTEIN PRECURSOR

PLEUROPNEUMONIAE



POMP1_HAEIN
OUTER MEMBRANE PROTEIN

HAEMOPHILUS INFLUENZAE

 154-184
 303-330
 341-368



P1 PRECURSOR


POMP2_HAEIN
OUTER MEMBRANE PROTEIN

HAEMOPHILUS INFLUENZAE

 16-71
 220-254
 326-353



P2 PRECURSOR


POMP3_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

 14-41



P.III PRECURSOR


POMP7_STAAU
70 KD OUTER MEMBRANE

STAPHYLOCOCCUS AUREUS

 53-80
 88-115



PROTEIN PRECURSOR


POMPA_THEMA
OUTER MEMBRANE PROTEIN

THERMOTOGA MARITIMA

 100-138
 151-178
 183-249
 255-292
 301-328
 351-385



ALPHA PRECURSOR


POMPC_ECOLI
OUTER MEMBRANE PROTEIN

ESCHERICHIA COLI

 20-47
 64-94



C PRECURSOR


POMPC_NEIGO
OUTER MEMBRANE PROTEIN

NEISSERIA GONORRHOEAE

 89-123



P.IIC PRECURSOR


POMPC_SALTI
OUTER MEMBRANE PROTEIN

SALMONELLA TYPHI

 166-193



C PRECURSOR


POMPF_ECOLI
OUTER MEMBRANE PROTEIN

ESCHERICHIA COLI

 21-55
 231-258



F PRECURSOR


POMPH_PHOS9
OMPH PROTEIN

PHOTOBACTERIUM SP
 292-319


POMPT_ECOLI
PROTEASE VII PRECURSOR

ESCHERICHIA COLI

 37-64


POP65_NEIGO
OPACITY PROTEIN OPA65

NEISSERIA GONORRHOEAE

 71-111


POP67_NEIGO
OPACITY PROTEIN OPA67

NEISSERIA GONORRHOEAE

 72-109


POPAA_NEIGO
OPACITY PROTEIN OPA53

NEISSERIA GONORRHOEAE

 71-123
 140-167


POPAG_NEIGO
OPACITY PROTEIN OPA52

NEISSERIA GONORRHOEAE

 80-107
 140-167


POPAI_NEIGO
OPACITY PROTEIN OPA54

NEISSERIA GONORRHOEAE

 80-107


POPAJ_NEIGO
OPACITY PROTEIN OPA58

NEISSERIA GONORRHOEAE

 71-105


POPAK_NEIGO
OPACITY PROTEIN OPA57

NEISSERIA GONORRHOEAE

 71-105


POPDA_ECOLI
OLIGOPEPTIDASE A

ESCHERICHIA COLI

 147-174


POPDA_SALTY
OLIGOPEPTIDASE A

SALMONELLA TYPHIMURIUM

 147-174


POPDE_PSEAE
TRANSCRIPTION FACTOR

PSEUDOMONAS AUREGINOSA

 64-91



OPDE


POPPA_ECOLI
OLIGOPEPTIDE-BINDING

ESCHERICHIA COLI

 402-432



PROTEIN PRECURSOR


POPPB_SALTY
OLIGOPEPTIDE PERMEASE

SALMONELLA TYPHIMURIUM

 265-299



PROTEIN OPPB


POPR1_NEIME
OPACITY-RELATED PROTEIN

NEISSERIA MENINGITIDIS

 108-135



POMP1


POPR3_NEIME
OPACITY-RELATED PROTEIN

NEISSERIA MENINGITIDIS

 94-135



POMP3


POSMC_ECOLI
OSMOTICALLY INDUCIBLE

ESCHERICHIA COLI

  5-32



PROTEIN OSMC


POSPA_BORBU
OUTER SURFACE PROTEIN A

BORRELIA BURGDORFERI

 63-100
 112-139
 157-204
 223-271



PRECURSOR


POSPB_BORBU
OUTER SURFACE PROTEIN B

BORRELIA BURGDORFERI

 113-259
 262-296



PRECURSOR


POTC2_BACSU
ORNITHINE CARBAMOYL-

BACILLUS SUBTILIS

 188-215



TRANSFERASE


POTCC_PSEAE
ORNITHINE CARBAMOYL-

PSEUDOMONAS AERUGINOSA

 17-44



TRANSFERASE


POTCC_PSEPU
ORNITHINE CARBAMOYL-

PSEUDOMONAS PUTIDA

  3-33



TRANSFERASE


POUTB_BACSU
SPORE OUTGROWTH FACTOR

BACILLUS SUBTILIS

 225-252



B


POUTO_ERWCA
LEADER PEPTIDASE

ERWINIA CAROTOVORA

 189-216


PP18K_STRPA
18 KD PROTEIN IN FIMA

STREPTOCOCCUS PARASANGUIS

 115-149



3′ REGION


PP18K_STRSA
18 KD PROTEIN IN SSAB

STREPTOCOCCUS SANGUIS

 10-37
 114-148



3′ REGION


PP1P_LACLC
P1-TYPE PROTEINASE

LACTOCOCCUS LACTIS

 107-155
 904-950
1073-1100
1223-1250
1466-1496
1625-1655



PRECURSOR


PP29_MYCHR
PROTEIN P29

MYCOPLASMA HYORHINIS

  5-56
 101-160
 202-246


PP2P_LACLA
PII-TYPE PROTEINASE

LACTOCOCCUS LACTIS

 107-155
 904-950
1073-1100
1223-1250
1446-1496
1625-1689



PRECURSOR


PP2P_LACPA
II-TYPE PROTEINASE

LACTOBACILLUS PARACASEI

 107-155
 904-941
1073-1100
1223-1250
1446-1496
1628-1655



PRECURSOR


PP30_ECOLI
P30 PROTEIN

ESCHERICHIA COLI

 55-82


PP34_RICRI
PROTEIN P34

RICKETTSIA RICKETTSII

  9-47
 135-173


PP37_MYCHR
PROTEIN P37 PRECURSOR

MYCOPLASMA HYORHINIS

 38-75


PP3P_LACLC
PIII-TYPE PROTEINASE

LACTOCOCCUS LACTIS

 107-155
 904-950
1073-1100
1223-1250
1446-1496
1628-1655



PRECURSOR


PP47K_PSECL
47 KD PROTEIN

PSEUDOMONAS CHLORORAPHIS

 288-315


PP54_ENTFC
P54 PROTEIN PRECURSOR

ENTEROCOCCUS FAECIUM

 58-92
 141-209


PP60_LISGR
PROTEIN P60 PRECURSOR

LISTERIA GRAYI

 31-61
 101-142
 300-334
 431-458


PP60_LISIN
PROTEIN P60 PRECURSOR

LISTERIA INNOCUA

 67-94
 102-143


PP60_LISIV
PROTEIN P60 PRECURSOR

LISTERIA IVANOVII

 101-140
 315-359


PP60_LISMO
PROTEIN P60 PRECURSOR

LISTERIA MONOCYTOGENES

 103-144


PP60_LISSE
PROTEIN P60 PRECURSOR

LISTERIA SEELIGERI

 101-140
 270-298
 321-365
 395-422


PP60_LISWE
PROETIN P60 PRECURSOR

LISTERIA WELSHIMERI

 113-140
 317-361
 396-423


PP69_MYCHR
PROTEIN P69

MYCOPLASMA HYORHINIS

 264-295
 421-464
 487-517
 544-575


PPABA_BACSU
ADC SYNTHASE

BACILLUS SUBTILIS

 12-41


PPABC_BACSU
4-AMINO-4-

BACILLUS SUBTILIS

 250-277



DEOXYCHORISMATE LYASE


PPABC_ECOLI
4-AMINO-4-

ESCHERICHIA COLI

 140-167



DEOXYCHORISMATE LYASE


PPABL_STRGR
PROTEIN Y

STREPTOMYCES GRISEUS

 52-79


PPAC_ARTVI
PENICILLIN ACYLASE

ARTHROBACTER VISCOSUS

 170-197
 333-363
 571-606
 640-674



PRECURSOR


PPAC_BACSH
PENICILLIN ACYLASE

BACILLUS SPHAERICUS

 232-259


PPAC_STRMU
PAC PROTEIN PRECURSOR

STREPTOCOCCUS MUTANS

 146-276
 281-465
 538-565
 576-630
1075-1102
1159-1186
1381-1434


PPAI1_BACSU
REGULATORY PROTEIN PAI 1

BACILLUS SUBTILIS

 103-137


PPAI2_BACSU
REGULATORY PROTEIN PAI 2

BACILLUS SUBTILIS

 145-172


PPAPE_ECOLI
FIMBRIAL PROTEIN PAPE

ESCHERICHIA COLI

 42-69
 86-123


PPAPF_ECOLI
MINOR FIMBRIAL PROTEIN

ESCHERICHIA COLI

  4-31



PAPF


PPAPG_ECOLI
FIMBRIAL PROTEIN PAPG

ESCHERICHIA COLI

 282-316



PRECURSOR


PPARA_AGRTU
PARA PROTEIN

AGROBACTERIUM TUMEFACIENS

 60-87


PPARB_ECOLI
PLASMID PARTITION PAR B

ESCHERICHIA COLI

 117-154
 249-283



PROTEIN


PPARE_ECOLI
TOPOISOMERASE IV SUBUNIT

ESCHERICHIA COLI

 444-471
 526-553



B


PPARE_SALTY
TOPOISOMERASE IV SUBUNIT

SALMONELLA TYPHIMURIUM

 444-471
 526-553



B


PPA_BACAN
PROTECTIVE ANTIGEN

BACILLUS ANTHRACIS

 13-52
 125-152
 296-335
 585-615
 650-684



PRECURSOR


PPBP2_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

 95-122
 178-205
 207-241



PROTEIN 2


PPPB2_NEIGO
PENICILLIN-BINDING

NEISSERIA GONORRHOEAE

 193-220



PROTEIN 2


PPBP2_NEIME
PENICILLIN-BINDING

NEISSERIA MENINGITIDIS

 193-220



PROTEIN 2


PPBP2_STRPN
PENICILLIN-BINDING

STREPTOCOCCUS PNEUMONIAE

 144-183
 216-243
 259-286
 605-632



PROTEIN 2B


PPBP3_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

 224-251
 334-368



PROTEIN 3 PRECURSOR


PPBP4_BACSU
PENICILLIN-BINDING

BACILLUS SUBTILIS

 374-401



PROTEIN 4°


PPBP4_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

 336-363



PROTEIN 4 PRECURSOR


PPBPA_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

 145-172



PROTEIN 1A


PPBPB_ECOLI
PENICILLIN-BINDING

ESCHERICHIA COLI

 62-96
 263-290



PROTEIN 1B


PPBPX_STRPN
PENICILLIN-BINDING

STREPTOCOCCUS PNEUMONIAE

 89-116
 706-733



PROTEIN 2X


PPBP_STAAU
PENICILLIN-BINDING

STAPHYLOCOCCUS AUREUS

 78-108
 176-203
 263-324
 502-529



PROTEIN


PPCAB_PSEPU
CYCLOISOMERASE

PSEUDOMONAS PUTIDA

 115-142
 226-253


PPEL3_ERWCA
PECTATE LYASE III

ERWINIA CAROTOVORA

 110-137



PRECURSOR


PPELA_ERWCA
PECTATE LYASE A

ERWINIA CAROTOVORA

 110-137



PRECURSOR


PPELB_ERWCA
PECTATE LYASE B

ERWINIA CAROTOVORA

 110-137



PRECURSOR


PPELC_ERWCA
PECTATE LYASE C

ERWINIA CAROTOVORA

 110-137



PRECURSOR


PPELF_ERWCH
PECTATE LYASE E

ERWINIA CHRYSANTHEMI

 40-67
 209-243



PRECURSOR


PPELP_ERWCA
PERIPLASMIC PECTATE

ERWINIA CAROTOVORA

 455-482



LYASE PRECURSOR


PPELP_YERPS
PERIPLASMIC PECTATE

YERSINIA PSEUDOTUBERCULOSIS

 459-489



LYASE PRECURSOR


PPELX_ERWCA
PUTATIVE PECTATE LYASE X

ERWINIA CAROTOVORA

 188-218



PRECURSOR


PPELX_ERWCH
EXOPOLYGALACTURONATE

ERWINIA CHRYSANTHEMI

 466-493



LYASE PRECURSOR


PPEPD_ECOLI
AMINOACYL-HISTIDINE

ESCHERICHIA COLI

 264-314



DIPEPTIDASE


PPEPQ_ECOLI
X-PRO DIPEPTIDASE

ESCHERICHIA COLI

 251-278


PPERT_BORBR
PERTACTIN PRECURSOR

BORDETELLA BRONCHISEPTICA

 617-644


PPERT_BORPA
PERTACTIN PRECURSOR

BORDETELLA PARAPERTUSSIS

 628-655


PPERT_BORPE
PERTACTIN PRECURSOR

BORDETELLA PERTUSSIS

 616-643


PPGK_CORGL
PHOSPHOGLYCERATE

CORYNEBACTERIUM GLUTMICUM

 83-117



KINASE


PPGK_ECOLI
PHOSPHOGLYCERATE

ESCHERICHIA COLI

 186-216



KINASE


PPGK_METBR
PHOSPHOGLYCERATE

METHANOBACTERIUM BRYANTII

 36-63



KINASE


PPGK_THETH
PHOSPHOGLYCERATE

THERMUS AQUATICUS

 222-249



KINASE


PPGL1_ERWCA
ENDO-POLYGALACTURO-

ERWINIA CAROTOVORA

 237-271



NASE PRECURSOR


PPGTE_SALTY
OUTER MEMBRANE

SALMONELLA TYPHIMURIUM

 66-93



PROTEASE E PRECURSOR


PPHA1_FREDI
C-PHYCOCYANIN-1 ALPHA

FREMYELLA DIPLOSIPHON

 21-48



CHAIN


PPHA2_FREDI
C-PHYCOCYANIN-2 ALPHA

FREMYELLA DIPLOSIPHON

 21-48



CHAIN


PPHAA_PSEOL
POLY(3-HYDROXY-

PSEUDOMONAS OLEOVORANS

 264-291



ALKANOATE) POLYMERASE 1


PPHAB_ANACY
ALLOPHYCOCYANIN BETA

ANABAENA CYLINDRICA

  7-48



CHAIN


PPHAB_ANAVA
ALLOPHYCOCYANIN BETA

ANABAENA VARIABILIS

 14-48



CHAIN


PPHAB_FREDI
ALLOPHYCOCYANIN BETA

FREMYELLA DIPLOSIPHON

  8-49



CHAIN


PPHAB_MASLA
ALLOPHYCOCYANIN BETA

MASTIGOCLADUS LAMINOSUS

 14-41



CHAIN


PPHAB_SYNP6
ALLOPHYCOCYANIN BETA

SYNECHOCOCCUS SP
 14-41



CHAIN


PPHAC_SYNP6
ALLOPHYCOCYANIN ALPHA-

SYNECHOCOCCUS SP
 33-60



B CHAIN


PPHAG_FREDI
ALLOPHYCOCYANIN GAMMA

FREMYELLA DIPLOSIPHON

 32-59



CHAIN


PPHB3_FREDI
C-PHYCOCYANIN-3 BETA

FREMYELLA DIPLOSIPHON

 29-56



CHAIN


PPHBB_ALCEU
ACETOACETYL-COA

ALCALIGENES EUTROPHUS

 55-85



REDUCTASE


PPHCA_SYNY1
C-PHYCOCYANIN ALPHA

SYNECHOCYSTIS SP
 21-55



CHAIN


PPHCB_SYNP6
C-PHYCOCYANIN BETA

SYNECHOCOCCUS SP
 28-55



CHAIN


PPHCB_SYNP7
C-PHYCOCYANIN BETA

SYNECHOCOCCUS SP
 28-55



CHAIN


PPHCB_SYNY1
C-PHYCOCYANIN BETA

SYNECHOCYSTIS SP
 21-55



CHAIN


PPHEA_ECOLI
CHORISMATE MUTASE

ESCHERICHIA COLI

 10-37


PPHEA_ERWHE
CHORISMATE MUTASE

ERWINIA HERBICOLA

 10-37
 159-186
 252-286


PPHEA_PSESP
PHENOL 2-MONOOXYGENASE

PSEUDOMONAS SP
 171-201
 282-314
 437-464


PPHEB_MASLA
PHYCOERYTHROCYANIN

MASTIGOCLADUS LAMINOSUS

 21-62



BETA CHAIN


PPHEB_PSESP
CATHECHOL 1,2-

PSEUDOMONAS SP
 24-51



DIOXYGENASE


PPHEG_SYNPY
LINKER POLYPEPTIDE

SYNECHOCOCCUS SP
 158-185


PPHEP_ECOLI
PHENYLALANINE-SPECIFIC

ESCHERICHIA COLI

 284-311



PERMEASE


PPHF1_CLOPA
PERIPLASMIC [FE]

CLOSTRIDIUM PASTEURIANUM

 434-471



HYDROGENASE 1


PPHL1_BACCE
SPHINGOMYELINASE C

BACILLUS CEREUS

  2-36



PRECURSOR


PPHL2_BACCE
SPHINGOMYELINASE C

BACILLUS CEREUS

  2-36



PRECURSOR


PPHL3_BACCE
SPHINGOMYELINASE C

BACILLUS CEREUS

  2-36



PRECURSOR


PPHLC_BACCE
PHOSPHOLIPASE C

BACILLUS CEREUS

 32-59
 179-206



PRECURSOR


PPHLC_CLOBI
PHOSPHOLIPASE C

CLOSTRIDIUM BIFERMENTANS

 50-77
 335-365



PRECURSOR


PPHLC_CLOPE
PHOSPHOLIPASE C

CLOSTRIDIUM PERFRINGENS

 210-237
 369-398



PRECURSOR


PPHLC_LISMO
PHOSPHOLIPASE C

LISTERIA MONOCYTOGENES

 147-174



PRECURSOR


PPHLC_PSEAE
HEMOLYTIC PHOSPHOLIPASE

PSEUDOMONAS AERUGINOSA

 685-712



C PRECURSOR


PPHLC_STAAU
PHOSPHOLIPASE C

STAPHYLOCOCCUS AUREUS

  6-33



PRECURSOR


PPHLD_BACCE
PHOSPHOLIPASE C

BACILLUS CEREUS

 179-206



PRECURSOR


PPHL_LEPIN
SPHINGOMYELINASE C

LEPTOSPIRA INTERROGANS

 30-57
 394-428



PRECURSOR


PPHND_ECOLI
PHND PROTEIN

ESCHERICHIA COLI

 296-326


PPHNK_ECOLI
PHNK PROTEIN

ESCHERICHIA COLI

 178-205


PPHNM_ECOLI
PHNM PROTEIN

ESCHERICHIA COLI

  5-35


PPHOE_CITFR
OUTER MEMBRANE PORE

CITROBACTER FREUNDII

 13-40
 47-105



PROTEIN E PRECURSOR


PPHOE_ECOLI
OUTER MEMBRANE PORE

ESCHERICHIA COLI

 13-40
 64-105
 168-195
 226-253



PROTEIN E PRECURSOR


PPHOE_KLEOX
OUTER MEMBRANE PORE

KLEBSIELLA OXYTOCA

 13-40
 64-91



PROTEIN E PRECURSOR


PPHOE_KLEPN
OUTER MEMBRANE PORE

KLEBSIELLA PNEUMONIAE

 13-40
 64-105



PROTEIN E PRECURSOR


PPHOE_SALTY
OUTER MEMBRANE PORE

SALMONELLA TYPHIMURIUM

 63-104
 320-347



PROTEIN E PRECURSOR


PPHOP_BACSU
ALK PHOS SYNTHESIS

BACILLUS SUBTILIS

 185-219



TRANS REG PROTEIN


PPHOQ_ECOLI
SENSOR PROTEIN PHOQ

ESCHERICHIA COLI

 244-278


PPHOQ_SALTY
VIRULENCE SENSOR PROTEIN

SALMONELLA TYPHIMURIUM

 226-260



PHOQ


PPHOR_BACSU
ALK PHOS SYNTHESIS

BACILLUS SUBTILIS

 89-145
 387-425



SENSOR PROTEIN PHOR


PPHRA_ECOLI
PHOTOREPAIR PROTEIN

ESCHERICHIA COLI

 63-90
 207-241



PHRA


PPHRA_SYNPY
R-PHYCOCYANIN II ALPHA

SYNECHOCOCCUS SP
 20-47



CHAIN


PPHRA_SYNPZ
R-PHYCOCYANIN II ALPHA

SYNECHOCOCCUS SP
 20-47



CHAIN


PPHSG_ECOLI
GLYCOGEN PHOSPHORYLASE

ESCHERICHIA COLI

 157-184
 488-515


PPHSM_ECOLI
MALTODEXTRIN

ESCHERICHIA COLI

 71-108



PHOSPHORYLASE


PPILA_NEIGO
PROB SIGNAL RECOGNITION

NEISSERIA GONORRHOEAE

 17-68



PARTICLE PROTEIN


PPILB_PSEAE
FIMBRIAL ASSEMBLY

PSEUDOMONAS AERUGINOSA

 16-60



PROTEIN PILB


PPILC_PSEAE
PILC PROTEIN

PSEUDOMONAS AERUGINOSA

 143-170


PPILD_NEIGO
LEADER PEPTIDASE

NEISSERIA GONORRHOEAE

 110-137


PPILQ_PSEAE
FIMBRIAL ASSEMBLY

PSEUDOMONAS AERUGINOSA

 71-115
 639-666



PROTEIN PILQ PRECURSOR


PPILS_PSEAE
SENSOR PROTEIN PILS

PSEUDOMONAS AERUGINOSA

  9-46


PPIR_ECOLI
P1 PROTEIN

ESCHERICHIA COLI

 156-188


PPIV_MORBO
PILIN GENE INVERTING

MORAXELLA BOVIS

 42-69
 152-182



PROTEIN


PPIV_MORLA
PILIN GENE INVERTING

MORAXELLA LACUNATA

 152-182



PROTEIN


PPLC_BACCE
PHOSPHODIESTERASE

BACILLUS CEREUS

 217-245



PRECURSOR


PPLC_BACTU
PHOSPHODIESTERASE

BACILLUS THURINGIENSIS

 216-245



PRECURSOR


PPLC_LISMO
PHOSPHODIESTERASE

LISTERIA MONOCYTOGENES

 238-265



PRECURSOR


PPLSC_ECOLI
ACYLTRANSFERASE

ESCHERICHIA COLI

 106-133


PPLSX_ECOLI
PLSX PROTEIN

ESCHERICHIA COLI

 241-270


PPLYD_ERWCA
PECTIN LYASE

ERWINIA CAROTOVORA

 27-92


PPMBA_ECOLI
PMPA PROTEIN

ESCHERICHIA COLI

  9-50


PPME_ERWCH
PECTINESTERASE

ERWINIA CHRYSANTHEMI

 60-87



PRECURSOR


PPMGY_ECOLI
PHOSPHOGLYCERATE

ESCHERICHIA COLI

 82-116



MUTASE


PPMGY_ZYMM
PHOSPHOGLYCERATE

ZYMOMONAS MOBILIS

 13-40
 80-110



MUTASE


PPNP_ECOLI
POLYRIBONUC

ESCHERICHIA COLI

 260-294



NUCLEOTIDYLTRANSF


PPNUC_SALTY
PNUC PROTEIN

SALMONELLA TYPHIMURIUM

 178-205


PPODK_BACSY
PYRUVATE, ORTHO-

BACTEROIDES SYMBIOSUS

 51-78



PHOSPHATE DIKINASE


PPORF_PSESY
OUTER MEMBRANE PORIN

PSEUDOMONAS SYRINGAE

 111-138



F PRECURSOR


PPORO_PSEAE
PORIN O PRECURSOR

PSEUDOMONAS AERUGINOSA

 390-424


PPORP_PSEAE
PORIN P PRECURSOR

PSEUDOMONAS AERUGINOSA

 139-181
 260-287
 369-396


PPOTD_ECOLI
BINDING PROTEIN

ESCHERICHIA COLI

 320-347



PRECURSOR


PPOTE_ECOLI
PUTRESCINE-ORNITHINE

ESCHERICHIA COLI

 91-118



ANTIPORTER


PPOXB_ECOLI
PYRUVATE DEHYDRO-

ESCHERICHIA COLI

  8-38



GENASE


PPPB3_BACSU
ALKALINE PHOSPHATASE III

BACILLUS SUBTILIS

 109-150
 433-460



PRECURSOR


PPPB4_BACSU
ALKALINE PHOSPHATASE IV

BACILLUS SUBTILIS

 85-123
 336-363



PRECURSOR


PPPB_ECOLI
ALKALINE PHOSPHATASE

ESCHERICHIA COLI

 235-262



PRECURSOR


PPPB_ESCFE
ALKALINE PHOSPHATE

ESCHERICHIA FERGUSONII

 236-263



PRECURSOR


PPPCE_FLAME
PROLYL ENDOPEPTIDASE

FLAVOBACTERIUM

 158-199



PRECURSOR

MENINGOSEPTICUM



PPPCF_FLAME
PROLYL ENDOPEPTIDASE

FLAVOBACTERIUM

 158-199
 256-283



PRECURSOR

MENINGOSEPTICUM



PPPCK_ECOLI
PHOSPHOENOLPYRUVATE

ESCHERICHIA COLI

 45-72



CARBOXYKINASE


PPPDA_CLOPE
PROTEIN A PRECURSOR

CLOSTRIDIUM PERFRINGENS

 73-107


PPPSA_ECOLI
PHOSPHOENOLPYRUVATE

ESCHERICHIA COLI

 49-76



SYNTHASE


PPQQ2_ACICA
COENZYME PQQ SYNTHESIS

ACINETOBACTER CALCOACETICUS

 40-74



PROTEIN II


PPRCA_ANAVA
CALCIUM DEPENDENT

ANABAENA VARIABILIS

 371-398



PROTEASE PRECURSOR


PPRCA_THEAC
PROTEASOME, ALPHA

THERMOPLASMA ACIDOPHILUM

 88-115



SUBUNIT


PPRC_ECOLI
TAIL-SPECIFIC PROTEASE

ESCHERICHIA COLI

 158-192
 366-393



PRECURSOR


PPRE1_STAAU
PLASMID RECOMBINATION

STAPHYLOCOCCUS AUREUS

 27-78
 152-179
 264-347



ENZYME


PPRE2_STAAU
PLASMID RECOMBINATION

STAPHYLOCOCCUS AUREUS

 48-75
 181-208
 310-361
 366-393



ENZYME


PPREA_LACPL
PLASMID RECOMBINATION

LACTOBACILLUS PLANTARUM

 37-71
 291-318



ENZYME


PPRE_BACLI
REGULATORY PROTEIN

BACILLUS LICHENIFORMIS

  2-40


PPRE_BACSP
PLASMID RECOMBINATION

BACILLUS SP
 181-224
 288-345



ENZYME


PPRE_STRAG
PLASMID RECOMBINATION

STREPTOCOCCUS AGALACTIAE

 285-319
 332-359
 420-454



ENZYME


PPRFA_LISMO
LISTERIOLYSIN REGULA-

LISTERIA MONOCYTOGENES

 76-110
 173-204



TORY PROTEIN


PPRIA_ECOLI
PRIMOSOMAL PROTEIN N′

ESCHERICHIA COLI

 218-245


PPRIM_BACSU
DNA PRIMASE

BACILLUS SUBTILIS

 383-433


PPRIM_BUCAP
DNA PRIMASE

BUCHNERA APHIDICOLA

 13-43
 282-319


PPRIM_CLOAB
DNA PRIMASE

CLOSTRIDIUM ACETOBUTYLICUM

 87-114


PPRIM_LACLA
DNA PRIMASE

LACTOCOCCUS LACTIS

 269-296


PPRIM_RICPR
DNA PRIMASE

RICKETTSIA PROWAZEKII

 10-37
 245-286
 477-504
 526-593


PPRIS_DESDE
PRISMANE PROTEIN

DESULFOVIBRIO DESULFURICANS

 30-57


PPRLB_ACHLY
BETA-LYTIC METALLOENDO-

ACHROMOBACTER LYTICUS

 317-344



PEPTIDASE


PPRLB_LYSEN
BETA-LYTIC METALLOENDO-

LYSOBACTER ENZYMOGENES

 121-148



PEPTIDASE


PPRO1_LISMO
ZINC METALLOPROTEINASE

LISTERIA MONOCYTOGENES

 111-145
 275-316



PRECURSOR


PPRO2_LISMO
ZINC METALLOPROTEINASE

LISTERIA MONOCYTOGENES

 111-145



PRECURSOR


PPROA_SERMA
GAMMA-GLUTAMYL

SERRATIA MARCESCENS

 309-336



PHOSPHATE REDUCTASE


PPROA_STAAU
PROTEIN A PRECURSOR

STAPHYLOCOCCUS AUREUS

  2-29


PPROB_SERMA
GLUTAMATE 5-KINASE

SERRATIA MARCESCENS

  7-34


PPROB_STRAG
PROTEIN B

STREPTOCOCCUS AGALACTIAE

 58-85


PPROC_PSEAE
PYRROLINE-5-

PSEUDOMONAS AERUGINOSA

 148-175



CARBOXYLATE REDUCTASE


PPROH_BACSU
PYRROLINE-5-

BACILLUS SUBTILIS

 200-227



CARBOXYLATE REDUCTASE



HOMOL


PPROP_ECOLI
PROLINE/BETAINE

ESCHERICHIA COLI

 460-487



TRANSPORTER


PPROV_ECOLI
PERIPHERAL MEMBRANE

ESCHERICHIA COLI

 24-54



PROTEIN PROV


PPROV_SALTY
PERIPHERAL MEMBRANE

SALMONELLA TYPHIMURIUM

 24-54



PROTEIN PROV


PPRRB_ECOLI
PRRB PROTEIN

ESCHERICHIA COLI

 170-197


PPRRC_ECOLI
ANTICODON NUCLEASE

ESCHERICHIA COLI

 282-309


PPRRD_ECOLI
PRRD PROTEIN

ESCHERICHIA COLI

 278-305


PPRSA_BACSU
PROTEIN EXPORT PROTEIN

BACILLUS SUBTILIS

 52-87
 95-157



PRSA PRECURSOR


PPRTA_STRGR
PROTEASE A PRECURSOR

STREPTOMYCES GRISEUS

 56-110


PPRTC_ERWCH
SECRETED PROTEASE C

ERWINIA CHRYSANTHEMI

 103-130



PRECURSOR


PPRTC_PORGI
COLLAGENASE PRECURSOR

PORPHYROMONAS GINGIVALIS

 285-312


PPRTD_ERWCH
PROTEASES SECRETION

ERWINIA CHRYSANTHEMI

 328-355



PROTEIN PRTD


PPRTE_BACNO
EXTRACELLULAR SERINE

BACTEROIDES NODOSUS

 106-133
 219-265
 346-384



PROTEASE PRECURSOR


PPRTE_ERWCH
PROTEASES SECRETION

ERWINIA CHRYSANTHEMI

 108-135
 158-192
 231-290



PROTEIN PRTE


PPRTF_ERWCH
PROTEASES SECRETION

ERWINIA CHRYSANTHEMI

 280-310



PROTEIN PRTF


PPRTM_LACLA
PROTEASE MATURATION

LACTOCOCCUS LACTIS

 76-103
 112-139



PROTEIN PRECURSOR


PPRTM_LACLC
PROTEASE MATURATION

LACTOCOCCUS LACTIS

 26-53
 76-103
 112-139



PROTEIN PRECURSOR


PPRTM_LACPA
PROTEASE MATURATION

LACTOBACILLUS PARACASEI

 76-103
 112-139



PROTEIN PRECURSOR


PPRTS_SERMA
EXTRACELLULAR SERINE

SERRATIA MARCESCENS

 304-331
 576-607
1007-1041



PROTEASE PRECURSOR


PPRTT_SERMA
EXTRACELLULAR SERINE

SERRATIA MARCESCENS

 304-331
 464-491
1007-1041



PROTEASE PRECURSOR


PPRTX_ERWCH
SECRETED PROTEASE C

ERWINIA CHRYSANTHEMI

 314-341



PRECURSOR


PPSAA_SYNEN
CHLOROPHYLL A

SYNECHOCOCCUS ELONGATUS

 120-147



APOPROTEIN A1

NAEGEL



PPSAA_SYNP2
CHLOROPHYLL A

SYNECHOCOCCUS SP
 109-136
 326-356



APOPROTEIN A1


PPSAA_SYNVU
CHLOROPHYLL A

SYNECHOCOCCUS VULCANUS

 120-147



APOPROTEIN A1


PPSAA_SYNY3
CHLOROPHYLL A

SYNECHOCYSTIS SP
 44-71
 120-147
 338-368



APOPROTEIN A1


PPSAB_YERPE
CHAPERONE PROTEIN PSAB

YERSINIA PESTIS

 244-271



PRECURSOR


PPSAD_SYNP6
PHOTOSYSTEM 1 REACTION

SYNECHOCOCCUS SP
 11-38



CENTRE SUBUNIT II


PPSAE_YERPE
PSAE PROTEIN PRECURSOR

YERSINIA PESTIS

 66-118


PPSBO_ANANI
STABILIZING POLYPEPTIDE

ANACYSTIS NIDULANS

 99-126
 209-243



PRECURSOR


PPSPA_ECOLI
PHAGE SHOCK PROTEIN A

ESCHERICHIA COLI

 55-82


PPSRA_WOLSU
POLYSULFIDE REDUCTASE

WOLINELLA SUCCINOGENES

 114-141



CHAIN A PRECURSOR


PPSTS_ECOLI
PHOSPHATE-BINDING

ESCHERICHIA COLI

 40-74



PROTEIN PRECURSOR


PPT1_BACSU
PHOSPHOTRANSFERASE

BACILLUS SUBTILIS

 26-60


PPT1_ECOLI
PHOSPHOTRANSFERASE

ESCHERICHIA COLI

 135-162
 399-426


PPT1_SALTY
PHOSPHOTRANSFERASE

SALMONELLA TYPHIMURIUM

 232-259
 399-426


PPT1_STACA
PHOSPHOTRANSFERASE

STAPHYLOCOCCUS CARNOSUS

 34-61


PPT1_STRSL
PHOSPHOTRANSFERASE

STREPTOCOCCUS SALIVARIUS

 34-61
 198-232


PPT2B_ERWCH
PHOSPHOTRANSFERASE

ERWINIA CHRYSANTHEMI

 127-154



ENZYME II


PPT2G_BACSU
PHOSPHOTRANSFERASE

BACILLUS SUBTILIS

 670-697



ENZYME II


PPT2L_LACCA
PHOSPHOTRANSFERASE

LACTOBACILLUS CASEI

 537-564



ENZYME II


PPT2L_LACLA
PHOSPHOTRANSFERASE

LACTOCOCCUS LACTIS

 183-214
 409-436



ENZYME II


PPT2L_STAAU
PHOSPHOTRANSFERASE

STAPHYLOCOCCUS AUREUS

 421-448
 530-557



ENZYME II


PPT2M_ECOLI
PHOSPHOTRANSFERASE

ESCHERICHIA COLI

 445-489



ENZYME II


PPT2M_STACA
PHOSPHOTRANSFERASE

STAPHYLOCOCCUS CARNOSUS

 388-415



ENZYME II


PPT2N_ECOLI
N-ACETYLGLUCOSAMINE-

ESCHERICHIA COLI

 370-400



PERMEASE


PPT2S_STRMU
PHOSPHOTRANSFERASE

STREPTOCOCCUS MUTANS

 600-627



ENZYME II


PPT3F_SALTY
PHOSPHOTRANSFERASE

SALMONELLA TYPHIMURIUM

 107-134



FPR PROTEIN


PPT3L_LACCA
PHOSPHOTRANSFERASE

LACTOBACILLUS CASEI

 40-67



FACTOR III


PPTHP_ECOLI
PHOSPHOCARRIER PROTEIN

ESCHERICHIA COLI &
 31-65



HPR

SALMONELLA TYPHIMURIUM



PPTHP_KLEPN
PHOSPHOCARRIER PROTEIN

KLEBSIELLA PNEUMONIAE

 31-65



HPR


PPTRB_ECOLI
PROTEASE II

ESCHERICHIA COLI

 94-121
 217-251


PPULA_KLEAE
PULLULANASE

KLEBSIELLA AEROGENES

 894-928


PPULA_KLEPN
PULLULANASE

KLEBSIELLA PNEUMONIAE

 894-918


PPULO_KLEPN
LEADER PEPTIDASE

KLEBSIELLA PNEUMONIAE

 178-205


PPULS_KLEPN
PULS PRECURSOR

KLEBSIELLA PNEUMONIAE

 70-97


PPUPA_PSEPU
UPTAKE PROTEIN

PSEUDOMONAS PUTIDA

 112-162
 210-237
 429-463
 736-763



PRECURSOR


PPUR1_BACSU
AMIDOPHOSPHORIBOSYL-

BACILLUS SUBTILIS

 394-421



TRANSF PREC


PPUR2_BACSU
PHOSPHORIBOSYLAMINE--

BACILLUS SUBTILIS

 349-376



GLYCINE LIGASE


PPUR3_BACSU
FORMYLTRANSFERASE

BACILLUS SUBTILIS

 149-176


PPUR3_ECOLI
FORMYLTRANSFERASE

ESCHERICHIA COLI

 27-54


PPUR4_BACSU
SYNTHASE I

BACILLUS SUBTILIS

 18-45


PPUR5_BACSU
CYCLO-LIGASE

BACILLUS SUBTILIS

 153-194


PPUR6_ECOLI
AIR CARBOXYLASE

ESCHERICHIA COLI

 131-158


PPUR7_BACSU
SAICAR SYNTHETASE

BACILLUS SUBTILIS

  3-43


PPUR8_BACSU
ADENYLOSUCCINATE LYASE

BACILLUS SUBTILIS

 56-130
 226-253


PPUR8_ECOLI
ADENYLOSUCCINATE LYASE

ESCHERICHIA COLI

 194-221
 331-372


PPUR9_BACSU
AICAR TRANSFORMYLASE

BACILLUS SUBTILIS

 19-53
 345-372


PPUR9_ECOLI
AICAR TRANSFORMYLASE

ESCHERICHIA COLI

 239-268


PPUR9_SALTY
AICAR TRANSFORMYLASE

SALMONELLA TYPHIMURIUM

 218-247


PPURL_BACSU
SYNTHASE II

BACILLUS SUBTILIS

 609-636


PPYG1_ANASP
LINKER POLYPEPTIDE CPCG1

ANABAENA SP
 88-115


PPYG1_MASLA
LINKER POLYPEPTIDE CPCG1

MASTIGOCLADUS LAMINOSUS

 89-116


PPYG2_ANASP
LINKER POLYPEPTIDE CPCG2

ANABAENA SP
 88-115


PPYG2_MASLA
LINKER POLYPEPTIDE CPCG2

MASTIGOCLADUS LAMINOSUS

 89-116


PPYG3_MASLA
LINKER POLYPEPTIDE CPCG3

MASTIGOCLADUS LAMINOSUS

 91-132


PPYG4_ANASP
LINKER POLYPEPTIDE CPCG4

ANABAENA SP
 90-131


PPYR1_ANASP
32.1 KD LINKER POLYPEPTIDE

ANABAENA SP
 35-62


PPYR2_FREDI
27.9 KD LINKER POLYPEPTIDE

FREMYELLA DIPLOSIPHON

 105-132


PPYR4_FREDI
31.6 KD LINKER POLYPEPTIDE

FREMYELLA DIPLOSIPHON

 22-66


PPYR5_FREDI
37.5 KD LINKER POLYPEPTIDE

FREMYELLA DIPLOSIPHON

 106-143


PPYR6_FREDI
30.8 KD LINKER POLYPEPTIDE

FREMYELLA DIPLOSIPHON

 43-70
 113-140


PPYRB_BACSU
ASPARTATE CARBAMOYL-

BACILLUS SUBTILIS

  9-36



TRANSFERASE


PPYRB_SERMA
ASPARTATE CARBAMOYL-

SERRATIA MARCESCENS

 70-97



TRANSFERASE


PPYRD_ECOLI
DIHYDROOROTATE

ESCHERICHIA COLI

 115-142



DEHYDROGENASE


PPYRD_SALTY
DIHYDROOROTATE

SALMONELLA TYPHIMURIUM

 115-142
 183-210



DEHYDROGENASE


PPYRG_BACSU
CTP SYNTHASE

BACILLUS SUBTILIS

 275-302
 322-349


PPYS1_FREDI
PHYCOBILISOME 9.7 KD

FREMYELLA DIPLOSIPHON

 21-48



LINKER POLYPEPTIDE


PQOR_ECOLI
QUINONE OXIDOREDUCTASE

ESCHERICHIA COLI

 180-215


PQUEA_ECOLI
QUEUOSINE BIOSYNTHESIS

ESCHERICHIA COLI

 234-261



PROTEIN QUEA


PR34K_CLOPA
34.2 KD PROTEIN IN

CLOSTRIDIUM PASTEURIANUM

 23-50
 157-232



RUBREDOXIN OPERON


PRACC_ECOLI
RACC PROTEIN

ESCHERICHIA COLI

  5-32


PRACD_STRTR
ASPARTATE RACEMASE

STREPTOCOCCUS THERMOPHILUS

 152-189


PRACX_BACSU
PROBABLE AMINO ACID

BACILLUS SUBTILIS

 132-162



RACEMASE


PRAFA_ECOLI
ALPHA-GALACTOSIDASE

ESCHERICHIA COLI

 89-116


PRAFD_ECOLI
RAFFINOSE INVERTASE

ESCHERICHIA COLI

 348-375


PRBSC_ECOLI
RIBOSE TRANSPORT SYSTEM

ESCHERICHIA COLI

 65-99
 195-222



COMPONENT


PRBSK_ECOLI
RIBOKINASE

ESCHERICHIA COLI

 200-239


PRBTR_KLEAE
RIBITOL (RBT) OPERON

KLEBSIELLA AEROGENES

  6-47



REPRESSOR


PRCSA_ECOLI
BIOSYNTHESIS ACTIVATION

ESCHERICHIA COLI

 170-197



PROTEIN A


PRCSA_ERWAM
BIOSYNTHESIS ACTIVATION

ERWINIA AMYLOVORA

 92-119
 174-201



PROTEIN A


PRCSA_ERWST
BIOSYNTHESIS ACTIVATION

ERWINIA STEWARTII

 174-201



PROTEIN A


PRCSA_KLEAE
BIOSYNTHESIS ACTIVATION

KLEBSIELLA AEROGENES

 168-205



PROTEIN A


PRCSB_ECOLI
CAPSULE SYNTHESIS B

ESCHERICHIA COLI

 14-41
 159-186



COMPONENT


PREC2_LEGPN
RECA PROTEIN

LEGIONELLA PNEUMOPHILA

 262-310


PRECA_ACHLA
RECA PROTEIN

ACHOLEPLASMA LAIDLAWII

 283-310


PRECA_AGRTU
RECA PROTEIN

AGROBACTERIUM TUMEFACIENS

  3-30
 132-159
 281-308


PRECA_ANAVA
RECA PROTEIN

ANABAENA VARIABILIS

 322-349


PRECA_AQUPY
RECA PROTEIN

AQUIFEX PYROPHILUS

 63-90
 126-153


PRECA_BACFR
RECA PROTEIN

BACTEROIDES FRAGILIS

 108-135


PRECA_BACSU
RECE PROTEIN

BACILLUS SUBTILIS

 267-294


PRECA_BRUAB
RECA PROTEIN

BRUCELLA ABORTUS

  3-30
 132-159
 280-307


PRECA_BURCE
RECA PROTEIN

BURKHOLDERIA CEPACIA

 75-109


PRECA_ERWCA
RECA PROTEIN

ERWINIA CAROTOVORA

 284-311


PRECA_LACDE
RECA PROTEIN

LACTOBACILLUS DELBRUECKII

 20-47


PRECA_LACHE
RECA PROTEIN

LACTOBACILLUS HELVETICUS

 20-47


PRECA_LACLA
RECA PROTEIN

LACTOCOCCUS LACTIS

 135-162
 232-269
 288-315


PRECA_METCL
RECA PROTEIN

METHYLOMONAS CLARA

 266-303


PRECA_METFL
RECA PROTEIN

METHYLOBACILLUS FLAGELLATUM

 276-303


PRECA_MYCPU
RECA PROTEIN

MYCOPLASMA PULMONIS

 30-57


PRECA_MYCTU
RECA PROTEIN

MYCOBACTERIUM TUBERCULOSIS

 749-776


PRECA_NEIGO
RECA PROTEIN

NEISSERIA GONORRHOEAE

 263-310


PRECA_PROMI
RECA PROTEIN

PROTEUS MIRABILIS

 283-310


PRECA_PSEAE
RECA PROTEIN

PSEUDOMONAS AERUGINOSA

 282-309


PRECA_RHILP
RECA PROTEIN

RHIZOBIUM LEGUMINOSARUM

  3-30
 131-158
 280-307


PRECA_RHILV
RECA PROTEIN

RHIZOBIUM LEGUMINOSARUM

 119-146
 268-295


PRECA_RHIME
RECA PROTEIN

RHIZOBIUM MELILOTI

 119-146
 268-295


PRECA_RHOSH
RECA PROTEIN

RHODOBACTER SPHAEROIDES

 119-146


PRECA_STRPN
RECA PROTEIN

STREPTOCOCCUS PNEUMONIAE

 134-161
 293-327


PRECA_SYNP2
RECA PROTEIN

SYNECHOCOCCUS SP
 124-151


PRECA_VIBCH
RECA PROTEIN

VIBRIO CHOLERAE

 290-317


PRECF_BACSU
RECF PROTEIN

BACILLUS SUBTILIS

  4-31
 178-205


PRECF_ECOLI
RECF PROTEIN

ESCHERICHIA COLI

 82-109
 147-174


PRECF_PROMI
RECF PROTEIN

PROTEUS MIRABILIS

 86-113


PRECF_PSEPU
RECF PROTEIN

PSEUDOMONAS PUTIDA

 84-111


PRECF_SALTY
RECF PROTEIN

SALMONELLA TYPHIMURIUM

 147-174


PRECJ_ECOLI
EXONUCLEASE RECJ

ESCHERICHIA COLI

 52-79


PRECN_BACSU
RECOMBINATION PROTEIN

BACILLUS SUBTILIS

 21-48
 156-184
 192-247
 299-336
 344-378


PRECQ_ECOLI
DNA HELICASE RECQ

ESCHERICHIA COLI

 468-495


PRELA_ECOLI
GTP PYROPHOSPHOKINASE

ESCHERICHIA COLI

 680-707


PREMA_BACSU
REPLICATION AND

BACILLUS SUBTILIS

  2-36
 81-108



MAINTENANCE PROTEIN


PREMA_STAAU
REPLICATION AND

STAPHYLOCOCCUS AUREUS

  2-36
 81-108



MAINTENANCE PROTEIN


PREMA_STAEP
REPLICATION AND

STAPHYLOCOCCUS EPIDERMIDIS

  2-36
 81-108



MAINTENANCE PROTEIN


PREP5_ECOLI
REPLICATION PROTEIN REPA

ESCHERICHIA COLI

 50-77
 90-117


PREPA_BACSU
REPA PROTEIN

BACILLUS SUBTILIS

 342-373


PREPA_ECOLI
REPA PROTEIN

ESCHERICHIA COLI

 91-118
 228-255


PREPA_NEIGO
REPLICATION PROTEIN

NEISSERIA GONORRHOEAE

 57-84
 138-172


PREPB_LACPL
REPLICATION PROTEIN

LACTOBACILLUS PLANTARUM

 184-211



REPB


PREPM_STAAU
REPLICATION INITIATION

STAPHYLOCOCCUS AUREUS

 254-284



PROTEIN


PREPN_STAAU
REPLICATION INITIATION

STAPHYLOCOCCUS AUREUS

 258-285



PROTEIN


PREPR_STRAG
REPR PROTEIN

STREPTOCOCCUS AGALACTIAE

 430-467


PREPS_STRPY
REPS PROTEIN

STREPTOCOCCUS PYOGENES

 423-467


PREPX_STAAU
REP PROTEIN

STAPHYLOCOCCUS AUREUS

 111-150
 172-210


PREPY_ECOLI
REPLICATION INITIATION

ESCHERICHIA COLI

 288-315



PROTEIN


PREP_CLOPE
REPLICATION PROTEIN

CLOSTRIDIUM PERFRINGENS

 168-195
 297-324
 343-375


PREP_ECOLI
REP HELICASE

ESCHERICHIA COLI

 119-146
 205-243


PREP_LACPL
REP PROTEIN

LACTOBACILLUS PLANTARUM

 119-199
 260-287


PRESP_CLOPE
RESOLVASE

CLOSTRIDIUM PERFRINGENS

 68-102
 151-185


PRF2_BACSU
PROBABLE PEPTIDE CHAIN

BACILLUS SUBTILIS

 34-68



RELEASE FACTOR 2


PRF2_ECOLI
PEPTIDE CHAIN RELEASE

ESCHERICHIA COLI

 86-113
 163-204



FACTOR 2


PRF2_SALTY
PEPTIDE CHAIN RELEASE

SALMONELLA TYPHIMURIUM

 86-113
 163-204



FACTOR 2


PRF3_ECOLI
PEPTIDE CHAIN RELEASE

ESCHERICHIA COLI

 180-210
 443-473



FACTOR 3


PRFAB_ECOLI
1,6-GALACTOSYL-

ESCHERICHIA COLI

 199-226



TRANSFERASE


PRFAG_ECOLI
BIOSYNTHESIS PROTEIN

ESCHERICHIA COLI

 185-212



RFAG


PRFAJ_ECOLI
1,2-GLUCOSYLTRANSFERASE

ESCHERICHIA COLI

 39-66
 233-268


PRFAJ_SALTY
1,2-GLUCOSYLTRANSFERASE

SALMONELLA TYPHIMURIUM

 68-95
 145-172
 236-263


PRFAK_SALTY
1,2-N-ACETYLGLUCOSAMINE-

SALMONELLA TYPHIMURIUM

 335-369



TRANSFERASE


PRFAL_ECOLI
O-ANTIGEN LIGASE

ESCHERICHIA COLI

 366-393


PRFAL_SALTY
O-ANTIGEN LIGASE

SALMONELLA TYPHIMURIUM

 326-360


PRFAP_ECOLI
BIOSYNTHESIS PROTEIN RFAP

ESCHERICHIA COLI

  8-35


PRFAS_ECOLI
BIOSYNTHESIS PROTEIN RFAS

ESCHERICHIA COLI

 62-89
 184-240


PRFAY_ECOLI
BIOSYNTHESIS PROTEIN

ESCHERICHIA COLI

 18-45



RFAY


PRFAZ_ECOLI
BIOSYNTHESIS PROTEIN

ESCHERICHIA COLI

  3-30
 85-112



RFAZ


PRFBB_SALTY
DTDP-GLUCOSE 4,6-

SALMONELLA TYPHIMURIUM

 320-359



DEHYDRATASE


PRFBM_SALTY
MANNOSE-1-PHOSPHATE

SALMONELLA TYPHIMURIUM

 313-361



GUANYLYLTRANSFERASE


PRFBS_SALTI
PARATOSE SYNTHASE

SALMONELLA TYPHI

 22-56
 205-232


PRFEA_VIBAN
PRECURSOR FOR FERRIC

VIBRIO ANGUILLARUM

 349-376



ANGUIBACTIN


PRFH_ECOLI
PEPTIDE CHAIN RELEASE

ESCHERICHIA COLI

 83-110



FACTOR HOMOLOG


PRG12_BACTU
PUTATIVE G12 SITE-SPECIFIC

BACILLUS THURINGIENSIS

 15-68
 190-262
 310-383



RECOMBINASE


PRHAB_ECOLI
RHAMNULOKINASE

ESCHERICHIA COLI

 175-202


PRHAB_SALTY
RHAMNULOKINASE

SALMONELLA TYPHIMURIUM

 175-202


PRHAR_ECOLI
L-RHAMNOSE OPERON

ESCHERICHIA COLI

 10-41



TRANSACTIVATOR


PRHAS_ECOLI
L-RHAMNOSE OPERON REG

ESCHERICHIA COLI

 152-179



PROTEIN RHAS


PRHIR_RHILV
RHIR REGULATORY PROTEIN

RHIZOBIUM LEGUMINOSARUM

 206-233


PRHLB_ECOLI
RNA HELICASE RHLB/MMRA

ESCHERICHIA COLI

 138-165


PRHO_BORBU
TRANS TERM FACTOR RHO

BORRELIA BURGDORFERI

 215-242
 327-369


PRHPR_BACSU
PROTEASE PROD REG

BACILLUS SUBTILIS

 82-109



PROTEIN HPR


PRHSA_ECOLI
RHSA PROTEIN PRECURSOR

ESCHERICHIA COLI

 667-694


PRHSB_ECOLI
RHSB PROTEIN PRECURSOR

ESCHERICHIA COLI

 667-694


PRHSC_ECOLI
RHSC PROTEIN PRECURSOR

ESCHERICHIA COLI

 380-414
 667-694
1056-1083


PRHSD_ECOLI
RHSD PROTEIN PRECURSOR

ESCHERICHIA COLI

 671-712
1071-1098


PRHSE_ECOLI
RHSE PROTEIN

ESCHERICHIA COLI

 345-372


PRIML_ECOLI
ACETYLTRANSFERASE

ESCHERICHIA COLI

 93-127


PRIR2_ECOLI
RIBONUCLEOSIDE-

ESCHERICHIA COLI

 167-194



DIPHOSPHATE REDUCTASE


PRISA_PHOLE
RIBOFLAVIN SYNTHASE

PHOTOBACTERIUM LEIOGNATHI

  2-47
 131-158



ALPHA CHAIN


PRISB_BACSU
RIBOFLAVIN SYNTHASE

BACILLUS SUBTILIS

  8-35



BETA CHAIN


PRISB_PHOLE
RIBOFLAVIN SYNTHASE

PHOTOBACTERIUM LEIOGNATHI

 14-41



BETA CHAIN


PRL10_STRAT
50S RIBOSOMAL PROTEIN L10

STREPTOMYCES ANTIBIOTICUS

 14-72
 106-133


PRL12_SYNY3
50S RIBOSOMAL PROTEIN L12

SYNECHOCYSTIS SP
  2-34


PRL12_THEMA
50S RIBOSOMAL PROTEIN L12

THERMOTOGA MARITIMA

  8-35
 56-86


PRL14_BACST
50S RIBOSOMAL PROTEIN L14

BACILLUS STEAROTHERMOPHILUS

 18-45


PRL14_MICLU
50S RIBOSOMAL PROTEIN L14

MICROCOCCUS LUTEUS

 18-45


PRL14_MYCCA
50S RIBOSOMAL PROTEIN L14

MYCOPLASMA CAPRICOLUM

 51-92


PRL15_BACLI
50S RIBOSOMAL PROTEIN L15

BACILLUS LICHENIFORMIS

 21-48


PRL15_BACST
50S RIBOSOMAL PROTEIN L15

BACILLUS STEAROTHERMOPHILUS

 95-134


PRL15_BACSU
50S RIBOSOMAL PROTEIN L15

BACILLUS SUBTILIS

 95-122


PRL15_CHLTR
50S RIBOSOMAL PROTEIN L15

CHLAMYDIA TRACHOMATIS

 110-144


PRL15_ECOLI
50S RIBOSOMAL PROTEIN L15

ESCHERICHIA COLI

 79-113


PRL15_LACLA
50S RIBOSOMAL PROTEIN L15

LACTOCOCCUS LACTIS

  8-35


PRL15_METVA
50S RIBOSOMAL PROTEIN L15

METHANOCOCCUS VANNIELII

 68-102


PRL15_MYCCA
50S RIBOSOMAL PROTEIN L15

MYCOPLASMA CAPRICOLUM

 63-135


PRL18_BACST
50S RIBOSOMAL PROTEIN L18

BACILLUS STEAROTHERMOPHILUS

 31-58


PRL18_CHLTR
50S RIBOSOMAL PROTEIN L18

CHLAMYDIA TRACHOMATIS

 32-86


PRL18_HALMA
50S RIBOSOMAL PROTEIN L18

HALOARCULA MARISMORTUI

 80-107


PRL18_MYCCA
50S RIBOSOMAL PROTEIN L18

MYCOPLASMA CAPRICOLUM

 61-88


PRL19_ECOLI
50S RIBOSOMAL PROTEIN L19

ESCHERICHIA COLI

 25-52


PRL19_HALMA
50S RIBOSOMAL PROTEIN L19

HALOARCULA MARISMORTUI

 101-128


PRL19_METVA
PROBABLE 50S RIBOSOMAL

METHANOCOCCUS VANNIELII

 45-72



PROTEIN


PRL1_PROVU
50S RIBOSOMAL PROTEIN L1

PROTEUS VULGARIS

 159-194


PRL1_SULSO
50S RIBOSOMAL PROTEIN L1

SULFOLOBUS SOLFATARICUS

  5-32
 184-211


PRL20_ECOLI
50S RIBOSOMAL PROTEIN L20

ESCHERICHIA COLI

 14-41


PRL20_MYCFE
50S RIBOSOMAL PROTEIN L20

MYCOPLASMA FERMENTANS

 14-41


PRL21_BACSU
50S RIBOSOMAL PROTEIN L21

BACILLUS SUBTILIS

  4-38


PRL22_ECOLI
50S RIBOSOMAL PROTEIN L22

ESCHERICHIA COLI

 28-55


PRL23_METVA
50S RIBOSOMAL PROTEIN L23

METHANOCOCCUS VANNIELII

 30-57


PRL23_MYCCA
50S RIBOSOMAL PROTEIN L23

MYCOPLASMA CAPRICOLUM

 32-59


PRL24_HALMA
50S RIBOSOMAL PROTEIN L24

HALOARCULA MARISMORTUI

 48-75


PRL24_METVA
50S RIBOSOMAL PROTEIN L24

METHANOCOCCUS VANNIELII

 61-90


PRL24_MICLU
50S RIBOSOMAL PROTEIN L24

MICROCOCCUS LUTEUS

 36-63


PRL29_CHLTR
50S RIBOSOMAL PROTEIN L29

CHLAMYDIA TRACHOMATIS

 39-66


PRL29_ECOLI
50S RIBOSOMAL PROTEIN L29

ESCHERICHIA COLI

 36-63


PRL29_MYCCA
50S RIBOSOMAL PROTEIN L29

MYCOPLASMA CAPRICOLUM

 39-85


PRL4_BACST
50S RIBOSOMAL PROTEIN L4

BACILLUS STEAROTHERMOPHILUS

 141-168


PRL4_MYCCA
50S RIBOSOMAL PROTEIN L4

MYCOPLASMA CAPRICOLUM

 144-198


PRL5_THETH
50S RIBOSOMAL PROTEIN L5

THERMUS AQUATICUS

 38-65


PRL6_BACST
50S RIBOSOMAL PROTEIN L6

BACILLUS STEAROTHERMOPHILUS

 79-106


PRL6_ECOLI
50S RIBOSOMAL PROTEIN L6

ESCHERICHIA COLI

 19-46


PRL6_METVA
50S RIBOSOMAL PROTEIN L6

METHANOCOCCUS VANNIELII

 129-159


PRL9_BACST
50S RIBOSOMAL PROTEIN L9

BACILLUS STEAROTHERMOPHILUS

 47-77


PRL9_ECOLI
50S RIBOSOMAL PROTEIN L9

ESCHERICHIA COLI

 122-149


PRLA0_HALCU
ACIDIC RIBOSOMAL PROTEIN

HALBACTERIUM CUTIRUBRUM

 138-182



P0 HOMOLOG


PRLA0_HALHA
ACIDIC RIBOSOMAL PROTEIN

HALOBACTERIUM HALOBIUM

 138-182



P0 HOMOLOG


PRLA0_HALMA
ACIDIC RIBOSOMAL PROTEIN

HALOARCULA MARISMORTUI

 64-91
 153-184



P0 HOMOLOG


PRLA0_METVA
ACIDIC RIBOSOMAL PROTEIN

METHANOCOCCUS VANNIELII

 194-221



P0 HOMOLOG


PRLA_HALEU
RIBOSOMAL PROTEIN ‘A’

HALOPHILIC EUBACTERIUM

 59-86




NRCC 41227


PRLA_HALHA
50S RIBOSOMAL PROTEIN L20

HALOBACTERIUM HALOBIUM

  2-29


PRLA_HALMA
50S RIBOSOMAL PROTEIN L12

HALOARCULA MARISMORTUI

  2-29


PRLA_METVA
RIBOSOMAL PROTEIN ‘A’

METHANOCOCCUS VANNIELII

  2-29


PRLA_MICLU
50S RIBOSOMAL PROTEIN MA

MICROCOCCUS LUTEUS

 55-82
 90-117


PRLX1_SALTY
43 KD RELAXATION PROTEIN

SALMONELLA TYPHIMURIUM

 226-260


PRLX1_STAAU
RLX PROTEIN

STAPHYLOCOCCUS AUREUS

  3-30
 102-132
 177-218
 266-300


PRLX2_SALTY
22 KD RELAXATION PROTEIN

SALMONELLA TYPHIMURIUM

 19-53


PRLX2_STAAU
RLX PROTEIN

STAPHYLOCOCCUS AUREUS

  3-30
 102-133
 261-295


PRLX3_STAAU
RLX PROTEIN

STAPHYLOCOCCUS AUREUS

  3-30
 146-216


PRLX_SULSO
50S RIBOSOMAL PROTEIN LX

SULFOLOBUS SOLFATARICUS

 32-62


PRNBR_BACAM
RIBONUCLEASE PRECURSOR

BACILLUS AMYLOLIQUEFACIENS

 33-67
 129-156


PRNC_ECOLI
RIBONUCLEASE III

ESCHERICHIA COLI

 10-37
 117-144


PRNE_ECOLI
RIBONUCLEASE E

ESCHERICHIA COLI

 413-440
 628-662


PRNPA_BUCAP
RIBONUCLEASE P PROTEIN

BUCHNERA APHIDICOLA

 85-114



COMPONENT


PRNPH_BACSU
RIBONUCLEASE PH

BACILLUS SUBTILIS

 159-186


PRNS_ECOLI
REGULATORY PROTEIN RNS

ESCHERICHIA COLI

 116-160


PRN_BACCI
RIBONUCLEASE

BACILLUS CIRCULANS

 82-109


PRN_BACIN
RIBONUCLEASE PRECURSOR

BACILLUS INTERMEDIUS

 38-72


PRP28_BACTK
RNA POLYMERASE SIGMA-28

BACILLUS THURINGIENSIS

 73-107



FACTOR PRECURSOR


PRP32_CITFR
RNA POLYMERASE SIGMA-32

CITROBACTER FREUNDII

 30-57



FACTOR


PRP35_BACTK
RNA POLYMERASE SIGMA-35

BACILLUS THURINGIENSIS

  8-35
 63-90



FACTOR PRECURSOR


PRP54_ALCEU
RNA POLYMERASE SIGMA-54

ALCALIGENES EUTROPHUS

 229-266



FACTOR


PRP54_AZOCA
RNA POLYMERASE SIGMA-54

AZORHIZOBIUM CAULINODANS

 174-208



FACTOR


PRP54_BACSU
RNA POLYMERASE SIGMA-54

BACILLUS SUBTILIS

 16-43
 97-124
 274-308
 396-423



FACTOR


PRP54_BRAJA
RNA POLYMERASE SIGMA-54

BRADYRHIZOBIUM JAPONICUM

 97-124



FACTOR 1


PRP54_KLEPN
RNA POLYMERASE SIGMA-54

KLEBSIELLA PNEUMONIAE

 148-182



FACTOR


PRP54_RHOCA
RNA POLYMERASE SIGMA-54

RHODOBACTER CAPSULATUS

 155-185



FACTOR


PRP55_BRAJA
RNA POLYMERASE SIGMA-54

BRADYRHIZOBIUM JAPONICUM

 145-172



FACTOR 2


PRP5M_ALCEU
PROBABLE SIGMA (54)

ALCALIGENES EUTROPHUS

 21-51



MODULATION PROTEIN


PRP5M_ECOLI
PROBABLE SIGMA (54)

ESCHERICHIA COLI

 21-67



MODULATION PROTEIN


PRP5M_SALTY
PROBABLE SIGMA (54)

SALMONELLA TYPHIMURIUM

 21-67



MODULATION PROTEIN


PRP70_BUCAP
RNA POLYMERASE SIGMA-70

BUCHNERA APHIDICOLA

 69-96
 109-136
 173-217
 228-255
 303-337



FACTOR


PRP70_CHLTR
RNA POLYMERASE SIGMA-70

CHLAMYDIA TRACHOMATIS

  5-32



FACTOR


PRP70_ECOLI
RNA POLYMERASE SIGMA-70

ESCHERICHIA COLI

 327-361



FACTOR


PRP70_PSEAE
RNA POLYMERASE SIGMA-70

PSEUDOMONAS AERUGINOSA

 334-368



FACTOR


PRP70_RICPR
RNA POLYMERASE SIGMA-70

RICKETTSIA PROWAZEKII

 244-321
 348-382



FACTOR


PRP80_MYXXA
RNA POLYMERASE SIGMA-80

MYXOCOCCUS XANTHUS

 208-235
 318-347
 359-386



FACTOR


PRPCF_SYNPY
BILIN BIOSYNTHESIS

SYNECHOCOCCUS SP
 180-207



PROTEIN RPCF


PRPOA_BACSU
DNA-DIRECTED RNA

BACILLUS SUBTILIS

 55-107



POLYMERASE ALPHA CHAIN


PRPOA_ECOLI
A-DIRECTED RNA

ESCHERICHIA COLI &
 57-105



POLYMERASE ALPHA CHAIN

SALMONELLA TYPHIMURIUM



PRPOA_HALHA
DNA-DIRECTED RNA

HALOBACTERIUM HALOBIUM

 863-904



POLYMERASE SUBUNIT A


PRPOA_HALMO
A-DIRECTED RNA

HALOCOCCUS MORRHUAE

 229-270



POLYMERASE SUBUNIT A


PRPOA_METTH
DNA-DIRECTED RNA

METHANOBACTERIUM

 218-245
 486-513
 642-669



POLYMERASE SUBUNIT A

THERMOAUTOTROPHICU



PRPOA_SULAC
DNA-DIRECTED RNA

SULFOLOBUS ACIDOCALDARIUS

 222-256
 500-527
 693-720



POLYMERASE SUBUNIT A


PRPOA_THECE
DNA-DIRECTED RNA

THERMOCOCCUS CELER

 228-262



POLYMERASE SUBUNIT A′


PRPOB_ECOLI
DNA-DIRECTED RNA

ESCHERICHIA COLI

 599-626
1011-1038



POLYMERASE BETA CHAIN


PRPOB_MYCLE
DNA-DIRECTED RNA

MYCOBACTERIUM LEPRAE

 723-760
1084-1111



POLYMERASE BETA CHAIN


PRPOB_SALTY
A-DIRECTED RNA

SALMONELLA TYPHIMURIUM

 599-626
 958-985
1011-1038



POLYMERASE BETA CHAIN


PRPOB_SULAC
A-DIRECTED RNA

SULFOLOBUS ACIDOCALDARIUS

 160-187
 255-282
 534-561
 827-861



POLYMERASE SUBUNIT B


PRPOB_THEMA
A-DIRECTED RNA

THERMOTOGA MARITIMA

 350-377



POLYMERASE BETA CHAIN


PRPOC_ANASP
DNA-DIRECTED RNA

ANABAENA SP
 152-194



POLYMERASE GAMMA CHAIN


PRPOC_ECOLI
DNA-DIRECTED RNA

ESCHERICHIA COLI

 786-813
 948-994
1223-1257



POLYMERASE BETA CHAIN


PRPOC_HALHA
DNA-DIRECTED RNA

HALOBACTERIUM HALOBIUM

 175-202



POLYMERASE SUBUNIT C


PRPOC_HALMO
DNA-DIRECTED RNA

HALOCOCCUS MORRHUAE

 27-54
 117-144
 207-234



POLYMERASE SUBUNIT C


PRPOC_METTH
DNA-DIRECTED RNA

METHANOBACTERIUM

 58-85
 272-302
 327-354



POLYMERASE SUBUNIT C

THERMOAUTOTROPHICU



PRPOC_MYCLE
A-DIRECTED RNA

MYCOBACTERIUM LEPRAE

 273-300
 860-887
 911-938
1131-1158



POLYMERASE BETA′ CHAIN


PRPOC_NOSCO
DNA-DIRECTED RNA

NOSTOC COMMUNE

 150-192



POLYMERASE GAMMA CHAIN


PRPOC_SULAC
DNA-DIRECTED RNA

SULFOLOBUS ACIDOCALDARIUS

 36-63
 172-214
 224-251



POLYMERASE SUBUNIT C


PRPOC_THECE
DNA-DIRECTED RNA

THERMOCOCCUS CELER

 21-58



POLYMERASE SUBUNIT A″


PRPOD_NOSCO
DNA-DIRECTED RNA

NOSTOC COMMUNE

 72-116
 402-449
 539-566



POLYMERASE DELTA CHAIN


PRPOE_ECOLI
RNA POLYMERASE SIGMA-E

ESCHERICHIA COLI

  5-39



FACTOR


PRPOS_ECOLI
RNA POLYMERASE SIGMA

ESCHERICHIA COLI

 281-308



FACTOR KATF


PRPOU_HALHA
DNA-DIRECTED RNA

HALOBACTERIUM HALOBIUM

 91-118



POLYMERASE SUBUNIT B′


PRPSA_AGRTU
RNA POLYMERASE SIGMA-A

AGROBACTERIUM TUMEFACIENS

 310-347
 397-427



FACTOR


PRPSA_ANASP
RNA POLYMERASE SIGMA-A

ANABAENA SP
 71-105



FACTOR


PRPSA_CLOAB
RNA POLYMERASE SIGMA-A

CLOSTRIDIUM ACETOBUTYLICUM

  2-29



FACTOR


PRPSA_STRAU
RNA POLYMERASE SIGMA

STREPTOMYCES AUREOFACIENS

 278-305



FACTOR RPOD


PRPSB_ANASP
RNA POLYMERASE SIGMA-B

ANABAENA SP
  4-31



FACTOR


PRPSB_BACSU
RNA POLYMERASE SIGMA-B

BACILLUS SUBTILIS

  5-35
 169-196
 200-230



FACTOR


PRPSB_MYXXA
RNA POLYMERASE SIGMA-B

MYXOCOCCUS XANTHUS

 47-74



FACTOR


PRPSB_STIAU
RNA POLYMERASE SIGMA-B

STIGMATELLA AURANTIACA

 96-123



FACTOR


PRPSC_ANASP
RNA POLYMERASE SIGMA-C

ANABAENA SP
 58-85



FACTOR


PRPSD_BACSU
RNA POLYMERASE SIGMA-D

BACILLUS SUBTILIS

 192-249



FACTOR


PRPSE_BACSU
RNA POLYMERASE SIGMA-E

BACILLUS SUBTILIS

 63-90



FACTOR PRECURSOR


PRPSE_CLOAB
RNA POLYMERASE SIGMA-E

CLOSTRIDIUM ACETOBUTYLICUM

 14-41
 116-160



FACTOR


PRPSF_BACLI
RNA POLYMERASE SIGMA-F

BACILLUS LICHENIFORMIS

  4-31
 191-248



FACTOR


PRPSF_BACME
RNA POLYMERASE SIGMA-F

BACILLUS MEGATERIUM

 191-225



FACTOR


PRPSF_BACSU
RNA POLYMERASE SIGMA-F

BACILLUS SUBTILIS

  4-31
 191-248



FACTOR


PRPSH_BACLI
RNA POLYMERASE SIGMA-H

BACILLUS LICHENIFORMIS

 191-218



FACTOR


PRPSH_BACSU
RNA POLYMERASE SIGMA-H

BACILLUS SUBTILIS

 186-213



FACTOR


PRPSK_BACSU
RNA POLYMERASE SIGMA-K

BACILLUS SUBTILIS

 75-109
 189-216



FACTOR


PRPSP_STAAU
RNA POLYMERASE SIGMA

STAPHYLOCOCCUS AUREUS

 19-46



FACTOR PLAC


PRPSW_STRCO
RNA POLYMERASE SIGMA

STREPOMYCES COELICOLOR

 232-273



FACTOR WHIG


PRPSX_BACTK
POSSIBLE RNA POLYMERASE

BACILLUS THURINGIENSIS

 33-60



SIGMA-G FACTOR


PRS10_ECOLI
30S RIBOSOMAL PROTEIN S10

ESCHERICHIA COLI

  3-30


PRS11_BACSU
30S RIBOSOMAL PROTEIN S11

BACILLUS SUBTILIS

  8-42


PRS13_BACSU
30S RIBOSOMAL PROTEIN S13

BACILLUS SUBTILIS

 44-85


PRS17_METVA
30S RIBOSOMAL PROTEIN S17

METHANOCOCCUS VANNIELII

 34-73


PRS1_ECOLI
30S RIBOSOMAL PROTEIN S1

ESCHERICHIA COLI

 99-126
 144-171


PRS1_PROSP
30S RIBOSOMAL PROTEIN S1

PROVIDENCIA SP
 39-66
 265-292
 349-376


PRS1_RHIME
30S RIBOSOMAL PROTEIN S1

RHIZOBIUM MELILOTI

 91-125
 172-217


PRS21_BACST
30S RIBOSOMAL PROTEIN S21

BACILLUS STEAROTHERMOPHILUS

  1-28


PRS2_SPICI
30S RIBOSOMAL PROTEIN S2

SPIROPLASMA CITRI

 91-125


PRS3_ACHLA
30S RIBOSOMAL PROTEIN S3

ACHOLEPLASMA LAIDLAWII

 83-110


PRS3_MYCCA
30S RIBOSOMAL PROTEIN S3

MYCOPLASMA CAPRICOLUM

 77-106
 136-163


PRS4_ECOLI
30S RIBOSOMAL PROTEIN S4

ESCHERICHIA COLI

 50-77


PRS5_HALMA
30S RIBOSOMAL PROTEIN S5

HALOARCULA MARISMORTUI

 160-187


PRS5_MYCCA
30S RIBOSOMAL PROTEIN S5

MYCOPLASMA CAPRICOLUM

 35-62
 182-216


PRS6_THETH
30S RIBOSOMAL PROTEIN S6

THERMUS AQUATICUS

 16-43


PRS7_METVA
30S RIBOSOMAL PROTEIN S7

METHANOCOCCUS VANNIELII

 69-96


PRS7_MYCLE
30S RIBOSOMAL PROTEIN S7

MYCOBACTERIUM LEPRAE

 22-49


PRS8_MICLU
30S RIBOSOMAL PROTEIN S8

MICROCOCCUS LUTEUS

 103-130


PRS8_MYCCA
30S RIBOSOMAL PROTEIN S8

MYCOPLASMA CAPRICOLUM

 41-78


PRSGA_ECOLI
FERRITIN LIKE PROTEIN

ESCHERICHIA COLI

 80-107


PRT67_ECOLI
RNA-DIRECTED DNA

ESCHERICHIA COLI

 225-268



POLYMERASE


PSACB_BACAM
LEVANSUCRASE PRECURSOR

BACILLUS AMYLOLIQUEFACIENS

 175-202
 254-281


PSACB_BACSU
LEVANSUCRASE PRECURSOR

BACILLUS SUBTILIS

 175-202
 254-288


PSACB_STRMU
LEVANSUCRASE PRECURSOR

STREPTOCOCCUS MUTANS

 31-65
 155-189
 314-369


PSACQ_BACLI
SACQ REGULATORY FACTOR

BACILLUS LICHENIFORMIS

  2-46


PSACT_BACSU
SACPA OPERON ANTI-

BACILLUS SUBTILIS

 102-129
 189-216



TERMINATOR


PSAGP_STRPY
STREPTOCOCCAL ACID

STREPTOCOCCUS PYOGENES

 294-331
 362-389



GLYCOPROTEIN


PSAOX_BACSN
SARCOSINE OXIDASE

BACILLUS SP
 350-377


PSAS2_CLOBI
SPORE PROTEIN

CLOSTRIDIUM BIFERMENTANS

 17-47


PSASG_BACCE
SPORE PROTEIN GAMMA-

BACILLUS CEREUS

 31-58



TYPE


PSASG_BACST
SPORE PROTEIN GAMMA-

BACILLUS STEAROTHERMOPHILUS

 37-64



TYPE


PSBCC_ECOLI
EXONUCLEASE SBCC

ESCHERICHIA COLI

 218-260
 337-364
 535-585
 622-656
 778-812
 821-865
 915-942


PSBCD_ECOLI
EXONUCLEASE SBCD

ESCHERICHIA COLI

 137-164
 334-397


PSBM_ECOLI
SBM PROTEIN

ESCHERICHIA COLI

  5-32
 436-470
 553-580


PSBP_BACSU
SBP PROTEIN

BACILLUS SUBTILIS

 28-55


PSCPA_STRPY
C5A PEPTIDASE PRECURSOR

STREPTOCOCCUS PYOGENES

 126-160
 784-811
 831-880


PSCRB_KLEPN
SUCROSE-6-PHOSPHATE

KLEBSIELLA PNEUMONIAE

 174-201



HYDROLASE


PSCRB_LACLA
SUCROSE-6-PHOSPHATE

LACTOCOCCUS LACTIS

 182-217
 354-385
 395-422



HYDROLASE


PSCRB_STRMU
SUCROSE-6-PHOSPHATE

STREPTOCOCCUS MUTANS

 335-362



HYDROLASE


PSCRK_SALTH
FRUCTOKINASE

SALMONELLA THOMPSON

 97-124


PSCRK_SALTY
FRUCTOKINASE

SALMONELLA TYPHIMURIUM

 183-210


PSCRY_KLEPN
SUCROSE PORIN PRECURSOR

KLEBSIELLA PNEUMONIAE

 61-88
 240-267


PSCRY_SALTY
SUCROSE PORIN PRECURSOR

SALMONELLA TYPHIMURIUM

 16-54
 61-88
 240-267


PSECA_BACSU
PREPROTEIN TRANSLOCASE

BACILLUS SUBTILIS

 12-39
 226-260



SECA SUBUNIT


PSECA_ECOLI
PREPROTEIN TRANSLOCASE

ESCHERICHIA COLI

 360-387
 453-481



SECA SUBUNIT


PSECB_ECOLI
PROTEIN-EXPORT PROTEIN

ESCHERICHIA COLI

 41-68



SECB


PSECD_ECOLI
PROTEIN-EXPORT

ESCHERICHIA COLI

 46-73
 378-412



MEMBRANE PROTEIN SECD


PSECF_ECOLI
PROTEIN-EXPORT

ESCHERICHIA COLI

 174-201



MEMBRANE PROTEIN SECF


PSECY_ECOLI
PREPROTEIN TRANSLOCASE

ESCHERICHIA COLI

 101-128



SECY SUBUNIT


PSECY_LACLA
PREPROTEIN TRANSLOCASE

LACTOCOCCUS LACTIS

 403-430



SECY SUBUNIT


PSECY_METVA
PREPROTEIN TRANSLOCASE

METHANOCOCCUS VANNIELII

 131-161
 396-423



SECY SUBUNIT


PSECY_STACA
PREPROTEIN TRANSLOCASE

STAPHYLOCOCCUS CARNOSUS

 149-191



SECY SUBUNIT


PSEFC_SALEN
SEFC PROTEIN PRECURSOR

SALMONELLA ENTERITIDIS

 137-164
 475-535


PSERA_BACSU
D-3-PHOSPHOGLYCERATE

BACILLUS SUBTILIS

 16-43
 347-374



DEHYDROGENASE


PSFAA_ECOLI
S-FIMBRIAL PROTEIN

ESCHERICHIA COLI

 11-38



SUBUNIT PRECURSOR


PSFSA_ECOLI
SUGAR FERMENTATION

ESCHERICHIA COLI

 81-115



STIMULATION PROTEIN


PSFUA_SERMA
IRON-TRANSPORT SFUA

SERRATIA MARCESCENS

 34-61



PROTEIN PRECURSOR


PSHU1_ECOLI
SHUFFLON PROTEIN A

ESCHERICHIA COLI

 224-262


PSHU2_ECOLI
SHUFFLON PROTEIN A′

ESCHERICHIA COLI

 224-262


PSHU3_ECOLI
SHUFFLON PROTEIN B

ESCHERICHIA COLI

 224-262


PSHU4_ECOLI
SHUFFLON PROTEIN B′

ESCHERICHIA COLI

 224-262


PSHU5_ECOLI
SHUFFLON PROTEIN C

ESCHERICHIA COLI

 224-262
 402-429


PSHU6_ECOLI
SHUFFLON PROTEIN C′

ESCHERICHIA COLI

 224-262


PSHU7_ECOLI
SHUFFLON PROTEIN D′

ESCHERICHIA COLI

 224-262


PSINR_BACLI
SINR PROTEIN

BACILLUS LICHENIFORMIS

  9-36
 43-80


PSINR_BACSU
SINR PROTEIN

BACILLUS SUBTILIS

  9-36
 43-70


PSLAP_ACEKI
CELL SURFACE PROTEIN

ACETOGENIUM KIVUI

 237-264
 282-309
 313-453
 458-489
 517-544
 563-593
 641-685
 726-753



PRECURSOR


PSLPA_ECOLI
PROPHAGE CP4-57

ESCHERICHIA COLI

 93-136



INTEGRASE


PSMF_ECOLI
SMF PROTEIN

ESCHERICHIA COLI

 24-51


PSMPB_ECOLI
SMALL PROTEIN B

ESCHERICHIA COLI

 27-61
 90-117


PSMP_ECOLI
SMP PROTEIN PRECURSOR

ESCHERICHIA COLI

 71-98


PSMTB_SYNP7
TRANSCRIPTIONAL

SYNECHOCOCCUS SP
 62-96



REPRESSOR SMTB


PSODF_COXBU
SUPEROXIDE DISMUTASE

COXIELLA BURNETII

 116-143


PSODF_ECOLI
SUPEROXIDE DISMUTASE

ESCHERICHIA COLI

 115-142


PSODF_METTH
SUPEROXIDE DISMUTASE

METHANOBACTERIUM

 25-52





THERMOAUTOTROPHICU



PSODF_PHOLE
SUPEROXIDE DISMUTASE

PHOTOBACTERIUM LEIOGNATHI

 22-63


PSODM_PROFR
SUPEROXIDE DISMUTASE

PROPIONIBACTERIUM

 164-191





FREUDENREICHII



PSOHB_ECOLI
SOHB PROTEIN PRECURSOR

ESCHERICHIA COLI

  7-48
 70-97
 273-300


PSOPB_ECOLI
SOPB PROTEIN

ESCHERICHIA COLI

 252-279


PSOXR_ECOLI
SOXR PROTEIN

ESCHERICHIA COLI

 16-63


PSP0J_BACSU
STAGE 0 SPORULATION

BACILLUS SUBTILIS

 131-158



PROTEIN J


PSP2A_BACME
STAGE II SPORULATION

BACILLUS MEGATERIUM

 19-53



PROTEIN AA


PSP2A_BACSU
STAGE II SPORULATION

BACILLUS SUBTILIS

 21-55



PROTEIN AA


PSP2B_BACLI
STAGE II SPORULATION

BACILLUS LICHENIFORMIS

 42-69



PROTEIN AB


PSP2B_BACME
STAGE II SPORULATION

BACILLUS MEGATERIUM

 36-73



PROTEIN AB


PSP2D_BACSU
STAGE II SPORULATION

BACILLUS SUBTILIS

 134-161



PROTEIN D


PSP2G_BACTK
POSSIBLE ASPARTYL

BACILLUS THURINGIENSIS

  4-36
 117-144



PROTEASE


PSP2J_BACSU
STAGE II SPORULATION

BACILLUS SUBTILIS

 14-44
 463-500



PROTEIN J


PSP3D_BACSU
STAGE III SPORULATION

BACILLUS SUBTILIS

  9-36
 52-86



PROTEIN D


PSP3J_BACSU
STAGE III SPORULATION

BACILLUS SUBTILIS

 44-75



PROTEIN J PRECURSOR


PSP4A_BACSU
STAGE IV SPORULATION

BACILLUS SUBTILIS

 139-180



PROTEIN A


PSP4B_BACSU
STAGE IV SPORULATION

BACILLUS SUBTILIS

 39-66



PROTEIN B


PSP4G_BACSU
STAGE IV SPORULATION

BACILLUS SUBTILIS

 251-278



PROTEIN FB


PSP5A_BACSU
STAGE V SPORULATION

BACILLUS SUBTILIS

  9-36



PROTEIN AF


PSPAA_STRDO
ANTIGEN I

STREPTOCOCCUS DOWNEI

 184-218


PSPAB_BACSU
SUBTILIN BIOSYNTHESIS

BACILLUS SUBTILIS

 181-208



117 KD PROTEIN


PSPAC_BACSU
SUBTILIN BIOSYNTHESIS

BACILLUS SUBTILIS

 311-338



PROTEIN SPAC


PSPAK_BACSU
SENSOR PROTEIN SPAK

BACILLUS SUBTILIS

 80-107
 224-251
 290-324


PSPAP_STRMU
CELL SURFACE ANTIGEN I/

STREPTOCOCCUS MUTANS

 122-276
 281-465
 538-565
 576-630
1071-1098
1155-1182
1377-1430



II PRECURSOR


PSPAR_BACSU
REGULATORY PROTEIN

BACILLUS SUBTILIS

  4-31
 172-199


PSPAT_BACSU
SUBTILIN TRANSPORT

BACILLUS SUBTILIS

 55-82
 226-267



PROTEIN SPAT


PSPEC_STRPY
EXOTOXIN TYPE C

STREPTOCOCCUS PYOGENES

 12-39



PRECURSOR


PSPIR_SPICI
SPIRALIN

SPIROPLASMA CITRI

 82-109
 155-182


PSPIR_SPIME
SPIRALIN

SPIROPLASMA MELLIFERUM

 195-222


PSPOT_ECOLI
GUAN-3′,5′-BIS(DIPHOS) 3′-

ESCHERICHIA COLI

 637-664



PYROPHOSPHOHYDROLA


PSPPA_ECOLI
PROTEASE IV

ESCHERICHIA COLI

 278-305


PSQHC_ZYMMO
SQUALENE-HOPENE CYCLASE

ZYMOMONAS MOBILIS

 590-617


PSRFA_BACSU
SURFACTIN SYNTHETASE

BACILLUS SUBTILIS

 159-186
 244-271



SUBUNIT A


PSRP5_ECOLI
SIGNAL RECOGNITION

ESCHERICHIA COLI

 301-328



PARTICLE PROTEIN


PSRP5_MYCMY
SIGNAL RECOGNITION

MYCOPLASMA MYCOIDES

 21-65
 107-141
 394-428



PARTICLE PROTEIN


PSSA1_PASHA
SEROTYPE-SPECIFIC ANTIGEN

PASTEURELLA HAEMOLYTICA

 151-178
 358-385
 465-518
 529-570
 860-904



1 PRECURSOR


PSSAB_STRPA
ADHESIN B PRECURSOR

STREPTOCOCCUS PARASANGUIS

 32-59


PSSAB_STRSA
ADHESIN B PRECURSOR

STREPTOCOCCUS SANGUIS

 21-59
 101-128


PSSB_ECOLI
SINGLE-STRAND BINDING

ESCHERICHIA COLI

 68-95



PROTEIN


PSSB_PROMI
SINGLE-STRAND BINDING

PROTEUS MIRABILIS

 63-104



PROTEIN


PSSB_SERMA
SINGLE-STRAND BINDING

SERRATIA MERCESCENS

 63-104



PROTEIN


PSSP5_STRSA
AGGLUTININ RECEPTOR

STREPTOCOCCUS SANGUIS

 131-173
 178-287
 295-483
 565-592
 676-710
1081-1131



PRECURSOR


PSTAV_STRAV
STREPTAVIDIN PRECURSOR

STREPTOMYCES AVIDINII

 125-152


PSTA_ECOLI
STREPTOTHRICIN ACETYL-

ESCHERICHIA COLI

 66-93



TRANSFERASE


PSTC1_STAAU
STAPHYLOCOAGULASE

STAPHYLOCOCCUS AUREUS

 90-119
 172-199
 280-311



PRECURSOR


PSTC2_STAAU
STAPHYLOCOAGULASE

STAPHYLOCOCCUS AUREUS

 90-117
 264-291



PRECURSOR


PSTC_CLOBE
L-TRANSD TRANSC CONTROL

CLOSTRIDIUM BEIJERINCKII

 47-74



PROTEIN


PSTPA_ECOLI
STPA PROTEIN

ESCHERICHIA COLI

 36-63


PSTR1_STRGR
INOSAMINE-PHOSPHATE

STREPTOMYCES GRISEUS

 183-210



AMIDINOTRANSFERASE 1


PSTRP_STREQ
STREPTOKINASE C

STREPTOCOCCUS EQUISIMILIS

 209-236
 281-308



PRECURSOR


PSTRP_STRPY
STREPTOKINASE A

STREPTOCOCCUS PYOGENES

 209-236



PRECURSOR


PSTRP_STRSP
STREPTOKINASE G

STREPTOCOCCUS SP
 209-236
 281-308



PRECURSOR


PSUBE_BACSU
MINOR EXTRACELLULAR

BACILLUS SUBTILIS

 435-462
 522-563
 605-639



PROTEASE EPR PREC


PSUBF_BACSU
BACILLOPEPTIDASE F

BACILLUS SUBTILIS

 40-67
 89-116
 121-148
 554-597



PRECURSOR


PSUBI_SALTY
SULFATE-BINDING PROTEIN

SALMONELLA TYPHIMURIUM

 37-74


PSUBI_SYNP7
SULFATE-BINDING PROTEIN

SYNECHOCOCCUS SP
 63-94



PRECURSOR


PSUBI_SYNY3
SULFATE-BINDING PROTEIN

SYNECHOCYSTIS SP
 64-91



PRECURSOR


PSUBT_BACLI
SUBTILISIN CARLSBERG

BACILLUS LICHENIFORMIS

 191-222



PRECURSOR


PSUBT_BACMS
SUBTILISIN

BACILLUS MESENTERICUS

 91-118


PSUBT_BACS9
SUBTILISIN PRECURSOR

BACILLUS SP
 36-63
 250-277


PSUBT_BACSA
SUBTILISIN AMYLO-

BACILLUS SUBTILIS

 197-224



SACCHARITICUS PRECURSOR


PSUBT_BACSD
SUBTILISIN

BACILLUS SUBTILIS

 86-117


PSUBT_BACST
SUBTILISIN J PRECURSOR

BACILLUS STEAROTHERMOPHILUS

 197-224


PSUBT_BACSU
SUBTILISIN E PRECURSOR

BACILLUS SUBTILIS

 197-224


PSUBV_BACSU
MINOR EXTRACELLULAR

BACILLUS SUBTILIS

 55-108
 613-654
 741-768



PROTEASE VPR PRECUR


PSUCC_ECOLI
SUCCINYL-COA SYNTHETASE

ESCHERICHIA COLI

 62-89



SYNTHETASE BETA


PSUCP_AGRVI
SUCROSE PHOSPHORYLASE

AGROBACTERIUM VITIS

 449-476


PSULA_ENTAE
CELL DIVISION INHIBITOR

ENTEROBACTER AEROGENES

 112-139


PSYA_ECOLI
ALANYL-TRNA SYNTHETASE

ESCHERICHIA COLI

 257-287
 725-752
 790-821


PSYD_ECOLI
ASPARTYL-TRNA

ESCHERICHIA COLI

 330-357



SYNTHETASE


PSYE_BACST
GLUTAMYL-TRNA

BACILLUS STEAROTHERMOPHILUS

 49-76



SYNTHETASE


PSYE_BACSU
GLUTAMYL-TRNA

BACILLUS SUBTILIS

 49-76
 351-386



SYNTHETASE


PSYE_THETH
GLUTAMYL-TRNA

THERMUS AQUATICUS

 405-432



SYNTHETASE


PSYFA_BACSU
PHENYLALANYL-TRNA

BACILLUS SUBTILIS

  7-34



SYNTHETASE A CHAIN


PSYFB_BACSU
PHENYLALANYL-TRNA

BACILLUS SUBTILIS

 340-367
 407-441



SYNTHETASE BETA CHAIN


PSYFB_ECOLI
PHENYLALANYL-TRNA

ESCHERICHIA COLI

 546-573
 607-634
 744-771



SYNTHETASE BETA CHAIN


PSYGB_ECOLI
GLYCYL-TRNA SYNTHETASE

ESCHERICHIA COLI

 354-381
 487-514



BETA CHAIN


PSYH_STREQ
HISTIDYL-TRNA SYNTHETASE

STREPTOCOCCUS EQUISIMILIS

 376-403


PSYI_METTH
ISOLEUCYL-TRNA

METHANOBACTERIUM

1010-1037



SYNTHETASE

THERMOAUTOTROPHICU



PSYK1_ECOLI
LYSYL-TRNA SYNTHETASE

ESCHERICHIA COLI

 283-310


PSYK2_ECOLI
LYSYL-TRNA SYNTHETASE,

ESCHERICHIA COLI

 45-72
 283-310



HEAT INDUCIBLE


PSYL_ECOLI
LEUCYL-TRNA SYNTHETASE

ESCHERICHIA COLI

 220-247


PSYM_BACST
METHIONYL-TRNA

BACILLUS STEAROTHERMOPHILUS

 69-99



SYNTHETASE


PSYM_ECOLI
METHIONYL-TRNA

ESCHERICHIA COLI

 87-124



SYNTHETASE


PSYP_ECOLI
PROLYL-TRNA SYNTHETASE

ESCHERICHIA COLI

 541-568


PSYQ_ECOLI
GLUTAMINYL-TRNA

ESCHERICHIA COLI

 394-421



SYNTHETASE


PSYRD_PSESY
SYRD PROTEIN

PSEUDOMONAS SYRINGAE

 449-483


PSYR_ECOLI
ARGINYL-TRNA SYNTHETASE

ESCHERICHIA COLI

 540-574


PSYT1_BACSU
THREONYL-TRNA

BACILLUS SUBTILIS

 401-428
 605-639



SYNTHETASE


PSYV_BACST
VALYL-TRNA SYNTHETASE

BACILLUS STEAROTHERMOPHILUS

 603-630
 809-843


PSYV_ECOLI
VALYL-TRNA SYNTHETASE

ESCHERICHIA COLI

 300-327
 882-912
 924-951


PSYW_BACST
TRYPTOPHANYL-TRNA

BACILLUS STEAROTHERMOPHILUS

 204-231
 239-266



SYNTHETASE


PSYY1_BACSU
TYROSYL-TRNA SYNTHETASE

BACILLUS SUBTILIS

 81-115
 375-409



1


PSYY2_BACSU
TYROSYL-TRNA SYNTHETASE

BACILLUS SUBTILIS

 69-96



2


PSYY_BACCA
TYROSYL-TRNA SYNTHETASE

BACILLUS CALDOTENAX

 295-322
 372-416


PSYY_BACST
TYROSYL-TRNA SYNTHETASE

BACILLUS STEAROTHERMOPHILUS

 295-322
 372-416


PT1M1_ECOLI
ENZYME ECOR124/3 1 M

ESCHERICHIA COLI

 126-167
 405-432
 485-512



PROTEIN


PT1R1—ECOLI
ENZYME ECOR124/3 R

ESCHERICHIA COLI

 30-57
 624-651
 702-736
 768-795
 843-870
 966-1000



PROTEIN


PT1R_ECOLI
ENZYME ECOK 1 R PROTEIN

ESCHERICHIA COLI

 158-263


PT1S1_ECOLI
ENZYME ECOR124/3 I

ESCHERICHIA COLI

 154-181



SPECIFICITY PROTEIN


PT1SA_ECOLI
ENZYME ECOA I SPECIFICITY

ESCHERICHIA COLI

 279-306



PROTEIN


PT1SB_ECOLI
ENZYME ECOB I SPECIFICITY

ESCHERICHIA COLI

 278-312



PROTEIN


PT1SD_ECOLI
ENZYME ECOD I SPECIFICITY

ESCHERICHIA COLI

 249-283



PROTEIN


PT1SE_ECOLI
ENZYME ECOE I SPECIFICITY

ESCHERICHIA COLI

 279-306



PROTEIN


PT1S_SALPO
ENZYME SPECIFICITY

SALMONELLA POTSDAM

 396-423



PROTEIN


PT1S_SALTY
ENZYME SPECIFICITY

SALMONELLA TYPHIMURIUM

 194-221
 276-304
 402-429



PROTEIN


PT257_ECOLI
TYPE IIS RESTRICTION

ESCHERICHIA COLI

 138-196
 265-295
 406-440
 639-682
 687-728
 926-954



ENZYME ECO571


PT2A1_ACICA
TYPE II RESTRICTION

ACINETOBACTER CALCOACETICUS

 49-76



ENZYME ACCI


PT2BF_BACSU
TYPE II RESTRICTION

BACILLUS SUBTILIS

  3-43
 135-223
 236-280



ENZYME BSUFI


PT2BR_BACSU
TYPE II RESTRICTION

BACILLUS SUBTILIS

  3-45
 338-384
 401-430
 532-559



ENZYME BSURI


PT2C1_CITFR
TYPE II RESTRICTION

CITROBACTER FREUNDII

 35-62



ENZYME CFRBI


PT2C1_HERAU
TYPE II RESTRICTION

HERPETOSIPHON AURANTIACUS

 176-215



ENZYME HGICI


PT2C2_HERAU
TYPE II RESTRICTION

HERPETOSIPHON AURANTIACUS

 243-273



ENZYME HGICII


PT2D1_DESDN
TYPE II RESTRICTION

DESULFOVIBRIO DESULFURICANS

 85-122



ENZYME DDEI


PT2D1_STRPN
TYPE II RESTRICTION

STREPTOCOCCUS PNEUMONIAE

 213-240



ENZYME DPNI


PT2E1_ECOLI
TYPE II RESTRICTION

ESCHERICHIA COLI

  2-29



ENZYME ECORI


PT2E2_ECOLI
TYPE II RESTRICTION

ESCHERICHIA COLI

 333-360



ENZYME ECORII


PT2E5_ECOLI
TYPE II RESTRICTION

ESCHERICHIA COLI

 128-155
 214-241



ENZYME ECORV


PT2F1_FLAOK
TYPE IIS RESTRICTION

FLAVOBACTERIUM OKEANOKOITES

 302-336



ENZYME FOKI


PT2H1_HAEIN
TYPE II RESTRICTION

HAEMOPHILUS INFLUENZAE

  6-38
 69-96



ENZYME HINFI


PT2H1_HAEPA
TYPE II RESTRICTION

HAEMOPHILUS PARAINFLUENZAE

 77-125



ENZYME HPAI


PT2H2_HAEHA
TYPE II RESTRICTION

HAEMOPHILUS HAEMOLYTICUS

 23-50



ENZYME HHAII


PT2H2_HAEIN
TYPE II RESTRICTION

HAEMOPHILUS INFLUENZAE

 97-138



ENZYME HINCII


PT2K1_KLEPN
TYPE II RESTRICTION

KLEBSIELLA PENUMONIAE

 18-45
 178-205



ENZYME KPNI


PT2M1_MORBO
TYPE II RESTRICTION

MORAXELLA BOVIS

 15-61
 187-215
 225-252



ENZYME MBOI


PT2M2_MORBO
TYPE IIS RESTRICTION

MORAXELLA BOVIS

  3-30
 158-185
 337-364



ENZYME MBOII


PT2MZ_METTF
POSSIBLE TYPE II

METHANOBACTERIUM

 105-151



RESTRICTION ENZYME MTHZI

THERMOFORMICICUM



PT2NG_NEIGO
TYPE II RESTRICTION

NEISSERIA GONORRHOEAE

 117-144
 231-258



ENZYME NGOPII


PT2S1_STRSA
TYPE II RESTRICTION

STREPTOCOCCUS SANGUIS

  5-32
 41-68
 395-446



ENZYME STSI


PT2S2_SHISO
TYPE II RESTRICTION

SHIGELLA SONNEI

 206-243
 258-288



ENZYME SSOII


PT2S3_STAAU
TYPE II RESTRICTION

STAPHYLOCOCCUS AUREUS

 70-102



ENZYME SAU3AI


PT2SI_SALIN
TYPE II RESTRICTION

SALMONELLA INFANTIS

 144-181



ENZYME SINI


PT2SM_SERMA
TYPE II RESTRICTION

SERRATIA MARCESCENS

 61-88



ENZYME SMAI


PT2TA_THEAQ
TYPE II RESTRICTION

THERMUS AQUATICUS

 147-181
 203-237



ENZYME TAQI


PT3MO_ECOLI
SYSTEM ECOP15 ENZYME

ESCHERICHIA COLI

 37-71
 75-102
 236-296
 378-405



MOD


PT3RE_BACCE
SYSTEM ENZYME RES

BACILLUS CEREUS

 62-89
 256-283


PTA47_TREPA
47 KD MEMBRANE ANTIGEN

TREPONEMA PALLIDUM

 26-53



PRECURSOR


PTA53_TREDE
53 KD MEMBRANE ANTIGEN

TREPONEMA DENTICOLA

 99-126
 298-329



A PRECUSOR


PTACY_BACAL
ALVEOLYSIN PRECURSOR

BACILLUS ALVEI

 272-302
 374-401


PTACY_CLOPE
PERFRINGOLYSIN O

CLOSTRIDIUM PERFRINGENS

 270-311
 372-434



PRECURSOR


PTACY_LISIV
IVANOLYSIN PRECURSOR

LISTERIA IVANOVII

 93-120
 167-195
 396-423


PTACY_LISMO
LISTERIOLYSIN O

LISTERIA MONOCYTOGENES

 98-125
 168-196
 295-329
 397-424



PRECURSOR


PTACY_LISSE
SEELIGERIOLYSIN

LISTERIA SEELIGERI

 99-126
 296-323
 349-376
 398-463



PRECURSOR


PTACY_STRPN
PNEUMOLYSIN

STREPTOCOCCUS PNEUMONIAE

 234-272


PTACY_STRPY
STREPTOLYSIN O

STREPTOCOCCUS PYOGENES

 86-133
 355-382
 440-470



PRECURSOR


PTAGB_BACSU
TECHOIC ACID BIOSYN

BACILLUS SUBTILIS

 42-69



PROTEIN B PREC


PTAGC_BACSU
TECHOIC ACID BIO-

BACILLUS SUBTILIS

 348-375



SYNTHESIS PROTEIN C


PTAGE_BACSU
TECHOIC ACID BIO-

BACILLUS SUBTILIS

 59-93
 144-181
 185-243
 565-592
 600-627



SYNTHESIS PROTEIN E


PTAGF_BACSU
TECHOIC ACID BIO-

BACILLUS SUBTILIS

 182-209



SYNTHESIS PROTEIN F


PTBP1_NEIGO
TRANSFERRIN-BINDING

NEISSERIA GONORRHOEAE

 39-73
 127-164
 398-425
 810-841



PROTEIN 1 PRECURSOR


PTBUD_PSEPI
PHENOL 2-MONOOXYGENASE

PSEUDOMONAS PICKETTII

 38-65
 227-254
 375-402


PTCDT_SALTY
TRANSCRIPTIONAL

SALMONELLA TYPHIMURIUM

 105-132



REGULATORY PROTEIN TCDT


PTCPC_VIBCH
MEMBRANE PROTEIN TCPC

VIBRIO CHOLERAE

 20-47
 83-128
 199-233
 263-290
 344-375
 459-486



PRECURSOR


PTCPE_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

 24-59
 77-111



PROTEIN TCPE


PTCPF_VIBCH
TCP PILUS SECRETION

VIBRIO CHOLERAE

 32-66
 211-238



PROTEIN TCPF


PTCPH_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

 95-122



PROTEIN TCPH


PTCIP_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

 25-52
 234-261
 279-306
 346-379



PROTEIN TCPI


PTCPN_VIBCH
TCP PILUS VIRULENCE

VIBRIO CHOLERAE

 48-75



REGULATORY PROTEIN


PTCPO_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

 230-257



PROTEIN TCPO


PTCPY_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

 121-148



PROTEIN TCPY


PTCPZ_VIBCH
TCP PILUS BIOSYNTHESIS

VIBRIO CHOLERAE

 44-85



PROTEIN TCPZ


PTCR2_BACSU
TETRACYCLINE RESISTANCE

BACILLUS SUBTILIS

 404-434



PROTEIN


PTCR_BACST
TETRACYCLINE RESISTANCE

BACILLUS STEAROTHERMOPHILUS

 422-453



PROTEIN


PTCR_STAAU
TETRACYCLINE RESISTANCE

STAPHYLOCOCCUS AUREUS

 404-431



PROTEIN


PTCR_STRAG
TETRACYCLINE RESISTANCE

STREPTOCOCCUS AGALACTIAE

 422-453



PROTEIN


PTCR_STRPN
TETRACYCLINE RESISTANCE

STREPTOCOCCUS PNEUMONIAE

 422-453



PROTEIN


PTDCA_ECOLI
TDCABC OPERON TRANS-

ESCHERICHIA COLI

 210-239



CRIPTIONAL ACTIVATOR


PTDCC_ECOLI
TDCC PROTEIN

ESCHERICHIA COLI

 334-361


PTEE6_STRPY
TRYPSIN-RESIST SURFACE

STREPTOCOCCUS PYOGENES

 137-164
 361-395
 400-437



T6 PROTEIN PREC


PTER2_ECOLI
TETRACYCLINE REPRESSOR

ESCHERICHIA COLI

  8-36



PROTEIN CLASS B


PTER4_ECOLI
TETRACYCLINE REPRESSOR

ESCHERICHIA COLI

 183-210



PROTEIN CLASS D


PTERA_ALCSP
TELLURIUM RESISTANCE

ALCALIGENES SP
 48-86



PROTEIN TERA


PTESB_ECOLI
ACYL-COA THIOESTERASE II

ESCHERICHIA COLI

  4-31


PTET5_ENTFA
TETRACYCLINE RESISTANCE

ENTEROCOCCUS FAECALIS

  2-36
 130-159
 179-206
 217-244



PROTEIN TETM


PTET9_ENTFA
TETRACYCLINE RESISTANCE

ENTEROCOCCUS FAECALIS

  2-36
 130-159
 217-244
 260-287



PROTEIN TETM


PTETC_ECOLI
TRANSPOSON TN10 TETC

ESCHERICHIA COLI

 72-106
 116-158



PROTEIN


PTETM_STRLI
TETRACYCLINE RESISTANCE

STREPTOMYCES LIVIDANS

 82-109



PROTEIN


PTETM_UREUR
TETRACYCLINE RESISTANCE

UREAPLASMA UREALYTICUM

  2-36
 130-159
 217-244
 260-287



PROTEIN TETM


PTETO_CAMCO
TETRACYCLINE RESISTANCE

CAMPYLOBACTER COLI

  2-29



PROTEIN TETO


PTETO_CAMJE
TETRACYCLINE RESISTANCE

CAMPYLOBACTER JEJUNI

  2-36



PROTEIN TETO


PTETO_STRMU
TETRACYCLINE RESISTANCE

STREPTOCOCCUS MUTANS

  2-29



PROTEIN TETO


PTETX_BACFR
TETRACYCLINE RESISTANCE

BACTEROIDES FRAGILIS

 25-62



PROTEIN


PTETX_CLOTE
TETANUS TOXIN PRECURSOR

CLOSTRIDIUM TETANI

 274-304
 540-567
 615-642
 692-719
 985-1012
1240-1277


PTF2B_PYRWO
TRANS INITIATION FACTOR

PYROCOCCUS WOESEI

 218-258



IIB HOMOLOG


PTFDC_ALCEU
CHLOROCATECHOL 1,2-

ALCALIGENES EUTROPHUS

  2-33



DIOXYGENASE


PTGT_ECOLI
QUEUINE TRNA-RIBOSYL-

ESCHERICHIA COLI

 173-200



TRANSFERASE


PTHD1_LACLA
THREONINE DEHYDRATASE

LACTOCOCCUS LACTIS

 267-303



BIOSYNTHETIC


PTHD2_ECOLI
THREONINE DEHYDRATASE

ESCHERICHIA COLI

 293-320



CATABOLIC


PTHDF_BACSU
FURAN OXIDATION PROTEIN

BACILLUS SUBTILIS

 153-180
 192-226
 282-316
 391-418



THDF


PTHDF_ECOLI
FURAN OXIDATION PROTEIN

ESCHERICHIA COLI

 226-260
 404-431



THDF


PTHDF_PSEPU
FURAN OXIDATION PROTEIN

PSEUDOMONAS PUTIDA

 226-260



THDF


PTHER_BACCE
THERMOLYSIN

BACILLUS CEREUS

  4-38
 240-267


PTHER_BACST
THERMOLYSIN PRECURSOR

BACILLUS STEAROTHERMOPHILUS

 45-72


PTHER_BACTH
THERMOLYSIN

BACILLUS THERMO-
 86-113





PROTEOLYTICUS



PTHET_THEVU
THERMITASE

THERMOACTINOMYCES VULGARIS

 131-161


PTHIC_ECOLI
THIC PROTEIN

ESCHERICHIA COLI

 232-263
 301-328


PTHIG_ECOLI
THIG PROTEIN

ESCHERICHIA COLI

 138-165


PTHPS_SULAC
THERMOPSIN PRECURSOR

SULFOLOBUS ACIDOCALDARIUS

 135-172
 199-233


PTHRC_BRELA
THREONINE SYNTHASE

BREVIBACTERIUM

 288-315





LACTOFERMENTUM



PTHTR_SACER
PUTATIVE THIOSULFATE

SACCHAROPOLYSPORA ERYTHRAEA

 69-96



SULFURTRANSFERASE


PTIG_ECOLI
TRIGGER FACTOR

ESCHERICHIA COLI

 144-171


PTMPA_TREPA
TREPONEMAL MEMBRANE

TREPONEMA PALLIDUM

 236-266



PROTEIN A PRECURSOR


PTMPB_TREPA
TREPONEMAL MEMBRANE

TREPONEMA PALLIDUM

 44-71



PROTEIN B PRECURSOR


PTMPB_TREPH
TREPONEMAL MEMBRANE

TREPONEMA PHAGEDENIS

 41-68



PROTEIN B PRECURSOR


PTNAB_ECOLI
LOW AFFINITY TRYPTOPHAN

ESCHERICHIA COLI

 74-108



PERMEASE


PTNP4_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

 52-79
 322-349


PTNP7_ENTFA
TRANSPOSON TN917

ENTEROCOCCUS FAECALIS

 59-97
 111-138



RESOLVASE


PTNPA_STAAU
TRANSPOSASE A

STAPHYLOCOCCUS AUREUS

 151-178


PTNPB_STAAU
TRANSPOSASE B

STAPHYLOCOCCUS AUREUS

 589-625


PTNPI_BACTU
TNP I RESOLVASE

BACILLUS THURINGIENSIS

  7-62
 65-92
 174-201


PTNSB_ECOLI
TRANSPOSON TN7 TRANS-

ESCHERICHIA COLI

 99-126
 510-537



POSITION PROTEIN TNSB


PTNSC_ECOLI
TRANSPOSON TN7 TRANS-

ESCHERICHIA COLI

 32-59
 314-341



POSITION PROTEIN TNSC


PTNSD_ECOLI
TRANSPOSON TN7 TRANS-

ESCHERICHIA COLI

 339-366



POSITION PROTEIN TNSD


PTNSE_ECOLI
TRANSPOSON TN7 TRANS-

ESCHERICHIA COLI

 463-490



POSITION PROTEIN TNSE


PTOD1_PSEPU
TOLUENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

 36-63



ALPHA SUBUNIT


PTOD2_PSEPU
TOLUENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

 119-153



BETA SUBUNIT


PTODA_PSEPU
TOLUENE 1,2-DIOXYGENASE

PSEUDOMONAS PUTIDA

 179-213



SYSTEM


PTODJ_PSEPU
TODF PRODUCT HYDRATASE

PSEUDOMONAS PUTIDA

 143-170


PTOLA_ECOLI
TOLA PROTEIN

ESCHERICHIA COLI

 101-138


PTOLC_ECOLI
OUTER MEMBRANE PROTEIN

ESCHERICHIA COLI

 144-178
 184-211
 239-266
 348-375
 383-443



TOLC PRECURSOR


PTOP1_SYNP7
DNA TOPOISOMERASE I

SYNECHOCOCCUS SP
 203-230


PTORA_ECOLI
TRIMETHYLAMINE-N-OXIDE

ESCHERICHIA COLI

 797-824



REDUCTASE


PTOX1_BORPE
PERTUSSIS TOXIN SUBUNIT

BORDETELLA PERTUSSIS

 179-206



1 (S1) PRECURSOR


PTOX2_BORPE
PERTUSSIS TOXIN SUBUNIT

BORDETELLA PERTUSSIS

 58-85



2 (S2) PRECURSOR


PTOXA_CLODI
TOXIN A

CLOSTRIDIUM DIFFICILE

 20-88
 99-159
 204-231
 342-369
 373-414
 847-962
 966-994
 997-1024
1348-1402


PTOXA_PSEAE
EXOTOXIN A PRECURSOR

PSEUDOMONAS AERUGINOSA

 470-497


PTOXB_CLODI
TOXIN B

CLOSTRIDIUM DIFFICILE

 38-72
 133-163
 199-241
 825-869
 923-950
1334-1388
1403-1433
1506-1565
1716-1747


PTOXS_VIBCH
TRANSMEMBRANE

VIBRIO CHOLERAE

 13-40



REGULATORY PROTEIN TOXS


PTPF1_TREPA
ANTIGEN TPF 1

TREPONEMA PALLIDUM

 106-143


PTPIS_ECOLI
TRIOSEPHOSPHATE

ESCHERICHIA COLI

 83-110



ISOMERASE


PTPIS_MORSP
TRIOSEPHOSPHATE

MORAXELLA SP
 139-166



ISOMERASE


PTPR_PORGI
THIOL PROTEASE

PORPHYROMONAS GINGIVALIS

 117-144



PRECURSOR


PTR2M_AGRT3
TRYPTOPHAN 2-MONO-

AGROBACTERIUM TUMEFACIENS

 239-266
 501-529



OXYGENASE


PTR2M_AGRT4
TRYPTOPHAN 2-MONO-

AGROBACTERIUM TUMEFACIENS

 239-266
 501-529



OXYGENASE


PTR2M_PSESS
TRYPTOPHAN 2-MONO-

PSEUDOMONAS SYRINGAE

 41-68



OXYGENASE


PTRA1_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

 58-113


PTRA2_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

 11-38
 58-113


PTRA3_ECOLI
TRANSPOSASE

ESCHERICHIA COLI

 721-755


PTRA3_RHIME
TRANSPOSASE

RHIZOBIUM MELILOTI

 179-206


PTRA3_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

 33-60
 68-95


PTRA4_ECOLI
TRANSPOSASE

ESCHERICHIA COLI

 181-208
 308-340
 720-754


PTRA6_ECOLI
TRANSPOSASE

ESCHERICHIA COLI

 51-78


PTRA6_SHISO
TRANSPOSASE

SHIGELLA SONNEI

 51-78
 200-227
 231-258


PTRA7_ECOLI
TRANSPOSASE

ESCHERICHIA COLI

 729-756


PTRA9_MYCTU
PUTATIVE TRANSPOSASE

MYCOBACTERIUM TUBERCULOSIS

 159-186


PTRAB_BACTB
IS231B PROBABLE

BACILLUS THURINGINESIS

 281-308
 419-446



TRANSPOSASE


PTRAC_BACTB
IS231C PROBABLE

BACILLUS THIRINGIENSIS

 281-308
 419-446



TRANSPOSASE


PTRAC_STAAU
TRANSPOSASE

STAPHYLOCOCCUS AUREUS

  4-31
 45-72


PTRAX_BACTB
IS231 PROBABLE

BACILLUS THURINGIENSIS

 281-308
 419-446



TRANSPOSASE


PTRA_BACTU
TRANSPOSASE

BACILLUS THURINGIENSIS

 93-127
 509-539


PTRA_PSEAE
TRANSPOSASE

PSEUDOMONAS AERUGINOSA

 127-154
 721-755


PTRB1_ECOLI
TRAB PROTEIN

ESCHERICHIA COLI

 113-143


PTRBF_ECOLI
TRBF PROTEIN

ESCHERICHIA COLI

 12-39


PTRB1_ECOLI
TRB1 PROTEIN

ESCHERICHIA COLI

 70-97


PTRC1_ECOLI
TRAC-1 PROTEIN

ESCHERICHIA COLI

1006-1058


PTRC2_ECOLI
TRAC-2 PROTEIN

ESCHERICHIA COLI

1102-1149


PTRC3_ECOLI
TRAC-3 PROTEIN

ESCHERICHIA COLI

 884-931


PTRD1_ECOLI
TRAD PROTEIN

ESCHERICHIA COLI

 297-348


PTREA_ECOLI
PERIPLASMIC TREHALASE

ESCHERICHIA COLI

 362-403
 477-508



PRECURSOR


PTREC_ECOLI
AMYLOTREHALASE

ESCHERICHIA COLI

 280-307


PTRFA_ECOLI
TRFA TRANSCRIPTIONAL

ESCHERICHIA COLI

  5-32
 105-132



REPRESSOR PROTEIN


PTRG1_ECOLI
TRAG PROTEIN

ESCHERICHIA COLI

 61-88
 630-657
 831-858
 865-895


PTRG5_ECOLI
TRAG PROTEIN

ESCHERICHIA COLI

 196-223


PTRG6_ECOLI
TRAG PROTEIN

ESCHERICHIA COLI

 195-222
 518-545


PTRI1_ECOLI
TRAI PROTEIN

ESCHERICHIA COLI

 155-209
 597-624
 887-914
1350-1377


PTRI2_ECOLI
TRAI PROTEIN

ESCHERICHIA COLI

 155-209
 597-624
 887-914
1350-1377


PTRI5_ECOLI
TRAI PROTEIN

ESCHERICHIA COLI

 47-74
 328-371


PTRJ4_ECOLI
TRAJ PROTEIN

ESCHERICHIA COLI

 36-63


PTRM8_ECOLI
TRAM PROTEIN

ESCHERICHIA COLI

  5-32


PTRMA_ECOLI
TRNA (URACIL-5-)-METHYL-

ESCHERICHIA COLI

 107-137



TRANSFERASE


PTRMD_ECOLI
TRNA (GUANINE-N1)-

ESCHERICHIA COLI

 115-142
 226-253



METHYLTRANSFERASE


PTRPA_BACSU
TRYPTOPHAN SYNTHASE

BACILLUS SUBTILIS

 220-247



ALPHA CHAIN


PTRPA_CAUCR
TRYPTOPHAN SYNTHASE

CAULOBACTER CRESCENTUS

 241-275



ALPHA CHAIN


PTRPA_PSEAE
TRYPTOPHAN SYNTHASE

PSEUDOMONAS AERUGINOSA

 176-203



ALPHA CHAIN


PTRPB_ACICA
TRYPTOPHAN SYNTHASE

ACINETOBACTER CALCOACETICUS

 79-113



BETA CHAIN


PTRPB_BACSU
TRYPTOPHAN SYNTHASE

BACILLUS SUBTILIS

 76-103
 318-345



BETA CHAIN


PTRPB_BRELA
TRYPTOPHAN SYNTHASE

BREVIBACTERIUM

 172-199



BETA CHAIN

LACTOFERMENTUM



PTRPB_LACCA
TRYPTOPHAN SYNTHASE

LACTOBACILLUS CASEI

 83-117



BETA CHAIN


PTRPB_LACLA
TRYPTOPHAN SYNTHASE

LACTOBACILLUS LACTIS

 77-104
 164-191



BETA CHAIN


PTRPB_VIBPA
TRYPTOPHAN SYNTHASE

VIBRIO PARAHAEMOLYTICUS

 56-83



BETA CHAIN


PTRPC_BRELA
INDOLE-3-GLYCEROL

BREVIBACTERIUM

 229-256



PHOSPHATE SYNTHASE

LACTOFERMENTUM



PTRPC_ECOLI
INDOLE-3-GLYCEROL

ESCHERICHIA COLI

 205-232



PHOSPHATE SYNTHASE


PTRPC_LACLA
INDOLE-3-GLYCEROL

LACTOCOCCUS LACTIS

 148-175



PHOSPHATE SYNTHASE


PTRPC_VIBPA
INDOLE-3-GLYCEROL

VIBRIO PARAHAEMOLYTICUS

 346-376



PHOSPHATE SYNTHASE


PTRPD_ACICA
ANTHRANILATE PHOSPHOR-

ACINETOBACTER CALCOACETICUS

 223-250
 260-294



IBOSYLTRANSFERASE


PTRPD_PSEAE
ANTHRANILATE PHOSPHOR-

PSEUDOMONAS AERUGINOSA

 205-232



IBOSYLTRANSFERASE


PTRPD_PSEPU
ANTHRANILATE PHOSPHOR-

PSEUDOMONAS PUTIDA

 205-232



IBOSYLTRANSFERASE


PTRPD_VIBPA
ANTHRANILATE PHOSPHOR-

VIBRIO PARAHAEMOLYTICUS

  2-29



IBOSYLTRANSFERASE


PTRPE_BACPU
ANTHRANILATE SYNTHASE

BACILLUS PUMILUS

 33-60



COMPONENT I


PTRPE_CLOTM
ANTHRANILATE SYNTHASE

CLOSTRIDIUM THERMOCELLUM

 165-226



COMPONENT I


PTRPE_LACLA
ANTHRANILATE SYNTHASE

LACTOCOCCUS LACTIS

 142-191



COMPONENT I


PTRPE_LEPBI
ANTHRANILATE SYNTHASE

LEPTOSPIRA BIFLEXA

 145-179



COMPONENT I


PTRPE_RHIME
ANTHRANILATE SYNTHASE

RHIZOBIUM MELILOTI

 139-166


PTRPE_SALTY
ANTHRANILATE SYNTHASE

SALMONELLA TYPHIMURIUM

 191-218



COMPONENT I


PTRPE_SULSO
ANTHRANILATE SYNTHASE

SULFOLOBUS SOLFATARICUS

 143-183
 298-328



COMPONENT I


PTRPE_VIBPA
ANTHRANILATE SYNTHASE

VIBRIO PARAHAEMOLYTICUS

  9-36
 54-81



COMPONENT I


PTRPG_ACICA
ANTHRANILATE SYNTHASE

ACINETOBACTER CALCOACETICUS

 12-39



COMPONENT II


PTRPG_AZOBR
ANTHRANILATE SYNTHASE

AZOSPIRILLUM BRASILENSE

  4-31



COMPONENT II


PTRPG_ECOLI
ANTHRANILATE SYNTHASE

ESCHERICHIA COLI

  5-32



COMPONENT II


PTRPG_LACLA
ANTHRANILATE SYNTHASE

LACTOCOCCUS LACTIS

  4-31



COMPONENT II


PTRPG_PSEAE
ANTHRANILATE SYNTHASE

PSEUDOMONAS AERUGINOSA

 12-39



COMPONENT II


PTRPG_SALTY
ANTHRANILATE SYNTHASE

SALMONELLA TYPHIMURIUM

  5-32



COMPONENT II


PTRPG_SERMA
ANTHRANILATE SYNTHASE

SERRATIA MARCESCENS

  9-43



COMPONENT II


PTRPG_SHIDY
ANTHRANILATE SYNTHASE

SHIGELLA DYSENTERIAE

  5-32



COMPONENT II


PTRPO_PSEAE
PUTATIVE TRANSCRIPTIONAL

PSEUDOMONAS AERUGINOSA

 147-174



REGULATOR


PTRS2_ECOLI
TRAS PROTEIN

ESCHERICHIA COLI

 85-119


PTRT3_ECOLI
RESISTANCE PROTEIN

ESCHERICHIA COLI

 184-221



PRECURSOR


PTRY1_SALTY
TRAY PROTEIN

SALMONELLA TYPHIMURIUM

 30-57


PTRYP_STRGR
TRYPSIN PRECURSOR

STREPTOMYCES GRISEUS

 80-107


PTSR_STRAZ
RRNA METHYLTRANSFERASE

STREPTOMYCES AZUREUS

 126-153


PTSST_STAAU
TOXIC SHOCK SYNDROME

STAPHYLOCOCCUS AUREUS

 29-63
 102-129



TOXIN-1 PRECURSOR


PTSX_ECOLI
CHANNEL-FORMING PROTEIN

ESCHERICHIA COLI

 225-252



TSX PRECURSOR


PTTK_ECOLI
HYPOTHETICAL 24.3 KD

ESCHERICHIA COLI

 81-115



PROTEIN


PTUS_ECOLI
SITE-BINDING PROTEIN

ESCHERICHIA COLI

 57-91
 107-134


PTYCA_BACBR
TRYOCIDINE SYNTHETASE I

BACILLUS BREVIS

 117-147
 534-561
1019-1051


PTYF1_TREPE
ANTIGEN TYF1

TREPONEMA PERTENUE

 106-143


PTYRA_BACSU
POSSIBLE PREPHENATE

BACILLUS SUBTILIS

 244-271
 312-342



DEHYDROGENASE


PTYRA_ECOLI
CHORISMATE MUTASE

ESCHERICHIA COLI

 329-370


PTYRR_ECOLI
TRANSCRIPTIONAL

ESCHERICHIA COLI

 483-510



REGULATORY PROTEIN TYRR


PTYSY_LACCA
THYMIDYLATE SYNTHASE

LACTOBACILLUS CASEI

 139-173


PTYSY_LACLA
THYMIDYLATE SYNTHASE

LACTOCOCCUS LACTIS

 75-109


PTYSY_STAAU
THYMIDYLATE SYNTHASE

STAPHYLOCOCCUS AUREUS

 69-96


PUHPB_ECOLI
SENSOR PROTEIN UHPB

ESCHERICHIA COLI

 276-303
 316-343


PUHPB_SALTY
SENSOR PROTEIN UHPB

SALMONELLA TYPHIMURIUM

 276-303
 316-343


PUMUC_SALTY
UMUC PROTEIN

SALMONELLA TYPHIMURIUM

 204-231


PUPP_ECOLI
URACIL PHOSPHORIBOSYL-

ESCHERICHIA COLI

 30-57



TRANSFERASE


PURAA_ECOLI
URACIL PERMEASE

ESCHERICHIA COLI

 350-384


PURE1_HELPY
UREASE ALPHA SUBUNIT

HELICOBACTER PYLORI

 15-42


PURE1_PROMI
UREASE ALPHA SUBUNIT

PROTEUS MIRABILIS

 72-99


PURE1_PROVU
UREASE ALPHA SUBUNIT

PROTEUS VULGARIS

 72-99


PURE1_UREUR
UREASE ALPHA SUBUNIT

UREAPLASMA UREALYTICUM

 13-40
 483-517


PURE2_HELPY
UREASE BETA SUBUNIT

HELICOBACTER PYLORI

 62-99


PURED_HELPY
UREASE OPERON URED

HELICOBACTER PYLORI

 17-44



PROTEIN


PUREE_PROMI
UREASE ACCESSORY

PROTEUS MIRABILIS

 57-84



PROTEIN UREE


PUREF_KLEAE
UREASE ACCESSORY

KLEBSIELLA AEROGENES

 20-47



PROTEIN UREF PRECURSOR


PUS45_LACLA
SECRETED 45 KD PROTEIN

LACTOCOCCUS LACTIS

 44-98
 150-223
 276-303



PRECURSOR


PUSHA_ECOLI
P-SUGAR HYDROLASE

ESCHERICHIA COLI

 56-83



PRECURSOR


PUSHA_SALTY
SILENT PROTEIN USHA (0)

SALMONELLA TYPHIMURIUM

 56-83



PRECURSOR


PUVRA_ECOLI
EXCINUCLEASE ABC

ESCHERICHIA COLI

 527-554
 871-898



SUBUNIT A


PUVRA_MICLU
EXCINUCLEASE ABC

MICROCOCCUS LUTEUS

 579-606
 619-646
 684-718
 922-949



SUBUNIT A


PUVRA_PARDE
EXCINUCLEASE ABC

PARACOCCUS DENITRIFICANS

 33-60



SUBUNIT A


PUVRC_BACSU
EXCINUCLEASE ABC

BACILLUS SUBTILIS

 342-372
 511-538



SUBUNIT C


PUVRC_ECOLI
EXCINUCLEASE ABC

ESCHERICHIA COLI

 37-64
 332-362



SUBUNIT C


PUVRD_ECOLI
HELICASE II

ESCHERICHIA COLI

 280-307


PVANA_ENTFC
VANCOMYCIN RESISTANCE

ENTEROCOCCUS FAECIUM

 182-209



PROTEIN VANA


PVANC_ENTGA
VANCOMYCIN RESISTANCE

ENTEROCOCCUS GALLINARUM

 177-211



PROTEIN VANC


PVIB4_AGRT5
VIRB4 PROTEIN PRECURSOR

AGROBACTERIUM TUMEFACIENS

 138-172


PVIB6_AGRT5
VIRB6 PROTEIN

AGROBACTERIUM TUMEFACIENS

 190-227


PVIB6_AGRT6
VIRB6 PROTEIN

AGROBACTERIUM TUMEFACIENS

 190-227


PVIB6_AGRT9
VIRB6 PROTEIN

AGROBACTERIUM TUMEFACIENS

 190-227


PVIBX_AGRT5
VIRB10 PROTEIN

AGROBACTERIUM TUMEFACIENS

 32-59
 212-239


PVIBX_AGRT6
VIRB10 PROTEIN

AGROBACTERIUM TUMEFACIENS

 32-59
 211-238


PVIBX_AGRT9
VIRB10 PROTEIN

AGROBACTERIUM TUMEFACIENS

 32-59
 212-239


PVIC1_AGRRA
VIRC1 PROTEIN

AGROBACTERIUM RHIZOGENES

 81-108





TUMEFACIENS



PVIC1_AGRT5
VIRC1 PROTEIN

AGROBACTERIUM TUMEFACIENS

 81-108


PVIC1_AGRT6
VIRC1 PROTEIN

AGROBACTERIUM TUMEFACIENS

 81-108


PVID3_AGRRA
VIRD3 PROTEIN

AGROBACTERIUM RHIZOGENES

 149-176
 265-292


PVIRA_AGRT5
WIDE HOST RANGE (WHR)

AGROBACTERIUM TUMEFACIENS

 42-76
 113-147
 657-684



VIRA PROTEIN


PVIRA_AGRT6
WIDE HOST RANGE (WHR)

AGROBACTERIUM TUMEFACIENS

 42-69
 84-125
 653-680



VIRA PROTEIN


PVIRA_AGRT9
WIDE HOST RANGE (WHR)

AGROBACTERIUM TUMEFACIENS

 42-69
 84-125
 653-680



VIRA PROTEIN


PVIRB_SHIFL
VIRB TRANSCRIPTIONAL

SHIGELLA FLEXNERI

 37-71
 107-134
 187-214
 252-291



ACTIVATOR


PVIRF_YEREN
VIRULENCE REGULON

YERSINIA ENTEROCOLITICA

 16-46



TRANSACTIVATOR


PVIRG_AGRRA
VIRG REGULATORY PROTEIN

AGROBACTERIUM RHIZOGENES

 34-61


PVIRL_AGRT6
LIMITED HOST RANGE (LHR)

AGROBACTERIUM TUMEFACIENS

 106-157



VIRA PROTEIN


PVISC_ECOLI
VISC PROTEIN

ESCHERICHIA COLI

 47-74


PVLPA_MYCHR
VARIANT SURFACE ANTIGEN

MYCOPLASMA HYORHINIS

 74-112



A PRECURSOR


PVM03_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

 54-81



PROTEIN 3 PRECURSOR


PVM07_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

 332-359



PROTEIN 7 PRECURSOR


PVM21_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

 330-357



PROTEIN 21 PRECURSOR


PVM24_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

 47-143



PROTEIN 24 PRECURSOR


PVM25_BORHE
OUTER MEMBRANE LIPO-

BORRELIA HERMSII

 315-356



PROTEIN 25 PRECURSOR


PVNFA_AZOVI
NITROGEN FIXATION

AZOTOBACTER VINELANDII

 158-188
 218-245



PROTEIN VNFA


PVNFK_AZOCH
NITROGENASE VANADIUM-

AZOTOBACTER CHROOCOCCUM

 68-95



IRON PROTEIN
MCD 1


PVNFK_AZOVI
NITROGENASE VANADIUM-

AZOTOBACTER VINELANDII

 68-95
 372-403



IRON PROTEIN


PVRP2_SALCH
65 KD VIRULENCE PROTEIN

SALMONELLA CHOLERAE-SUIS
 509-536


PVRP2_SALDU
65 KD VIRULENCE PROTEIN

SALMONELLA DUBLIN

 511-538


PVSDE_SALDU
VIRULENCE PROTEIN VSDE

SALMONELLA DUBLIN

  3-36


PVVHB_VIBVU
CYTOLYSIN SECRETION

VIBRIO VULNIFICUS

 30-75



PROTEIN


PWAPA_STRMU
WALL-ASSOCIATED PROTEIN

STREPTOCOCCUS MUTANS

  4-41
 313-386



PRECURSOR


PWRBA_ECOLI
TRP REPRESSOR BINDING

ESCHERICHIA COLI

 89-116



PROTEIN


PX191_ECOLI
X POLYPEPTIDE

ESCHERICHIA COLI

 104-131


PX192_ECOLI
X POLYPEPTIDE

ESCHERICHIA COLI

 104-131


PX193_ECOLI
X POLYPEPTIDE

ESCHERICHIA COLI

 104-131


PXISA_ANASP
EXCISASE A

ANABAENA SP
  4-31
 89-116
 135-162


PXPRB_ECOLI
POSSIBLE INTEGRASE/

ESCHERICHIA COLI

 268-295



RECOMBINASE XPRB


PXYLA_STAXY
XYLOSE ISOMERASE

STAPHYLOCOCCUS XYLOSUS

 411-438


PXYLK_KLEAE
XYLULOSE KINASE

KLEBSIELLA AEROGENES

  2-29


PXYLK_LACPE
XYLULOSE KINASE

LACTOBACILLUS PENTOSUS

 52-79
 211-238
 260-287


PXYLK_STAXY
XYLULOSE KINASE

STAPHYLOCOCCUS XYLOSUS

  4-31
 96-130
 209-236
 246-273


PXYLR_BACSU
XYLOSE REPRESSOR

BACILLUS SUBTILIS

 75-102
 260-287


PXYLR_LACPE
XYLOSE REPRESSOR

LACTOBACILLUS PENTOSUS

 262-289


PXYLR_STAXY
XYLOSE REPRESSOR

STAPHYLOCOCCUS XYLOSUS

 20-64
 101-158
 181-215
 221-255
 274-301


PXYLZ_PSEPU
ELECTRON TRANSFER

PSEUDOMONAS PUTIDA

 51-78
 104-131



COMPONENT


PXYN4_CALSA
PUTATIVE ENDO-1,4-

CALDOCELLUM

 198-225



BETA-XYLANASE

SACCHAROLYTICUM



PXYNA_BACCI
O-1,4-BETA-XYLANASE

BACILLUS CIRCULANS

 47-74



PRECURSOR


PXYNA_BACSS
ENDO-1,4-BETA-XYLANASE

BACILLUS SP
 173-200



PRECURSOR


PXYNA_BACSU
ENDO-1,4-BETA-XYLANASE

BACILLUS SUBTILIS

 47-74



PRECURSOR


PXYNA_CALSA
ENDO-1,4-BETA-XYLANASE A

CALDOCELLUM

 132-159
 226-256



PRECURSOR

SACCHAROLYTICUM



PXYNA_PSEFL
ENDO-1,4-BETA-XYLANASE

PSEUDOMONAS FLUORESCENS

 33-82



PRECURSOR


PXYNB_BACPU
BETA-XYLOSIDASE

BACILLUS PUMILUS

 459-486


PXYNB_CALSA
BETA-XYLOSIDASE

CALDOCELLUM

 440-474





SACCHAROLYTICUM



PXYNB_PSEFL
ENDO-1,4-BETA-XYLANASE

PSEUDOMONAS FLUORESCENS

 51-78
 251-278
 317-344
 475-502



PRECURSOR


PXYNC_PSEFL
ALPHA-L-ARABINOFURAN-

PSEUDOMONAS FLUORESCENS

 51-78
 251-278



OSIDASE C PRECURSOR


PXYNC_STRLI
ENDO-1,4-BETA-XYLANASE

STREPTOMYCES LIVIDANS

 183-210



C PRECURSOR


PY14K_HALMO
HYPOTHETICAL 14.9 KD

HALOCOCCUS MORRHUAE

 56-83



PROTEIN


PY23K_STROR
HYPOTHETICAL 23.1 KD

STREPTOCOCCUS ORALIS

 78-105



PROTEIN


PY36K_METSM
HYPOTHETICAL 36.7 KD

METHANOBREVIBACTER SMITHII

 128-162
 172-218



PROTEIN


PYAAC_ECOLI
HYPOTHETICAL 34.6 KD

ESCHERICHIA COLI

 271-298



PROTEIN


PYAAC_PSEFL
HYPOTHETICAL 33.9 KD

PSEUDOMONAS FLUORESCENS

 274-301



PROTEIN


PYAAM_ECOLI
HYPOTHETICAL 59.1 KD

ESCHERICHIA COLI

 45-72



PROTEIN


PYAAP_ECOLI
HYPOTHETICAL 56.6 KD

ESCHERICHIA COLI

 352-379



PROTEIN


PYAAQ_ECOLI
HYPOTHETICAL 28.5 KD

ESCHERICHIA COLI

 155-182



PROTEIN


PYABC_ECOLI
HYPOTHETICAL 34.9 KD

ESCHERICHIA COLI

 131-158



PROTEIN


PYABG_ECOLI
HYPOTHETICAL 89.7 KD

ESCHERICHIA COLI

 446-480
 627-654



PROTEIN


PYABN_ECOLI
HYPOTHETICAL 63.9 KD

ESCHERICHIA COLI

 428-455



PROTEIN


PYAC3_PSEAE
HYPOTHETICAL 23.9 KD

PSEUDOMONAS AERUGINOSA

 48-75
 150-177



PROTEIN


PYAD2_CLOAB
HYPOTHETICAL 21.6 KD

CLOSTRIDIUM ACETOBUTYLICUM

 75-109
 114-144



PROTEIN


PYAD3_CLOAB
HYPOTHETICAL 36.9 KD

CLOSTRIDIUM ACETOBUTYLICUM

 132-159
 165-196
 210-237



PROTEIN


PYAD6_CLOAB
HYPOTHETICAL PROTEIN

CLOSTRIDIUM ACETOBUTYLICUM

 21-55


PYADA_YEREN
INVASIN PRECURSOR

YERSINIA ENTEROCOLITICA

 196-230
 247-274
 318-381


PYADA_YERPS
INVASIN PRECURSOR

YERSINIA PSEUDOTUBERCULOSIS

 255-282
 297-360


PYADC_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 13-40
 101-131


PYAEA_RICRI
17 KD PROTEIN

RICKETTSIA RICKETTSII

 107-134


PYAFB_ECOLI
HYPOTHETICAL 29.4 KD

ESCHERICHIA COLI

 221-248



PROTEIN


PYAFD_ECOLI
HYPOTHETICAL 29.1 KD

ESCHERICHIA COLI

 34-71



PROTEIN


PYAFE_ECOLI
HYPOTHETICAL 23.0 KD

ESCHERICHIA COLI

 123-150



PROTEIN


PYA1B_ESCFE
HYPOTHETICAL PROTEIN

ESCHERICHIA FERGUSONII

  2-35


PYAM1_SALTY
PUTATIVE AMIDASE

SALMONELLA TYPHIMURIUM

 73-100


PYAT1_SYNY3
HYPOTHETICAL 13.0 KD

SYNECHOCYSTIS SP
 26-60



PROTEIN


PYATP_MYCLE
HYPO PROTEIN PUTATIVE

MYCOBACTERIUM LEPRAE

 23-57
 91-158
 511-538



ATP OPERON


PYATR_BACFI
HYPOL ATP-BINDING

BACILLUS FIRMUS

 211-238



TRANSPORT PROTEIN


PYATS_MYCGA
HYPOTHETICAL PROTEIN

MYCOPLASMA GALLISEPTICUM

  7-41


PYATU_MYCGA
HYPOTHETICAL PROTEIN

MYCOPLASMA GALLISEPTICUM

 29-56
 60-87


PYAV5_XANCV
HYPOTHETICAL 50 KD

XANTHOMONAS CAMPESTRIS

 68-98
 199-226



AVIRULENCE PROTEIN


PYBAH_ECOLI
HYPOTHETICAL 24.8 KD

ESCHERICHIA COLI

 49-79



PROTEIN


PYBBA_ECOLI
HYPOTHETICAL ABC

ESCHERICHIA COLI

  6-69



TRANSPORTER


PYBED_ECOLI
HYPOTHETICAL 9.8 KD

ESCHERICHIA COLI

 51-82



PROTEIN


PYBID_ECOLI
HYPOTHETICAL 14.1 KD

ESCHERICHIA COLI

 97-124



PROTEIN


PYCAE_ECOLI
HYPOTHETICAL 24.5 KD

ESCHERICHIA COLI

 34-61



PROTEIN


PYCBA_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 38-65


PYCBL_BACUN
HYPOTHETICAL 17.3 KD

BACTEROIDES UNIFORMIS

 66-100



PROTEIN


PYCEA_BACLA
HYPOTHETICAL PROTEIN

BACILLUS LAUTUS

 111-138


PYCFC_ECOLI
HYPOTHETICAL 22.9 KD

ESCHERICHIA COLI

 52-79



PROTEIN


PYCHR_ALCEU
HYPOTHETICAL PROTEIN

ALCALIGENES EUTROPHUS

 21-48


PYCIB_ECOLI
HYPOTHETICAL 20.8 KD

ESCHERICHIA COLI

 16-43



PROTEIN


PYCIF_ECOLI
18.6 KD PROTEIN

ESCHERICHIA COLI

  7-68
 134-166


PYCIK_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 35-62


PYCL1_ECOLI
HYPOTHETICAL 43.3 KD

ESCHERICHIA COLI

 54-81



PROTEIN


PYCP3_SYNPY
HYPOTHETICAL 29.3 KD

SYNECHOCOCCUS SP
 194-221



PROTEIN


PYCP3_SYNY3
HYPOTHETICAL 28.0 KD

SYNECHOCYSTIS SP
  7-34
 120-154



PROTEIN


PYCP5_SYNY3
HYPOTETHICAL 39.5 KD

SYNECHOCYSTIS SP
 277-308



PROTEIN


PYCPG_MASLA
HYPOTHETICAL PROTEIN

MASTIGOCLADUS LAMINOSUS

  2-29


PYCPY_PSEA9
HYPO PHYCOCYANIN

PSEUDANABAENA SP
 380-407



OPERON PROTEIN Y


PYCR2_BACTK
HYPOTHETICAL 29.1 KD

BACILLUS THURINGIENSIS

 42-84
 153-180



PROTEIN


PYCS5_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 32-59



PRECURSOR


PYCW5_BACSU
HYPOTHETICAL PROTEIN

BACILLUS SUBTILIS

  3-30
 59-86


PYD3M_HERAU
HYPOTHETICAL 68.4 KD

HERPETOSIPHON AURANTIACUS

 12-39
 151-178
 360-416



PROTEIN


PYDBA_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 32-66
 117-144
 163-216
 233-267
 295-329
 458-485
 676-717
1136-1163
1499-1530


PYDBD_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 80-107


PYDDB_ECOLI
HYPOTHETICAL 86.7 KD

ESCHERICHIA COLI

 606-641
 683-714
 726-753



PROTEIN


PYDDC_ECOLI
HYPOTHETICAL 80.8 KD

ESCHERICHIA COLI

 373-400
 421-452
 621-648



PROTEIN


PYDDD_ECOLI
HYPOTHETICAL 24.1 KD

ESCHERICHIA COLI

 133-174



PROTEIN


PYDEH_ECOLI
HYPOTHETICAL 20.5 KD

ESCHERICHIA COLI

 96-130



PROTEIN


PYDEJ_ECOLI
HYPOTHETICAL 18.3 KD

ESCHERICHIA COLI

  4-38



PROTEIN


PYDEK_ECOLI
HYPOTHETICAL 65.5 KD

ESCHERICHIA COLI

 333-360
 524-551
 565-592



PROTEIN


PYDNN_BORBU
HYPOTHETICAL 11.2 KD

BORRELIA BURGDORFERI

  6-36



PROTEIN


PYDO1_SULSO
HYPOTHETICAL 14.7 KD

SULFOLOBUS SOLFATARICUS

 17-58
 71-103



PROTEIN


PYDO3_SULSO
HYPOTHETICAL 16.9 KD

SULFOLOBUS SOLFATARICUS

 11-38



PROTEIN


PYEBA_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 93-120


PYEBG_ECOLI
HYPOTHETICAL 10.7 KD

ESCHERICHIA COLI

 50-77



PROTEIN


PYEEE_ECOLI
HYPOTHETICAL 38.1 KD

ESCHERICHIA COLI

 43-70



PROTEIN


PYEEF_ECOLI
HYPO 49.8 KD TRANSPORT

ESCHERICHIA COLI

 147-174



PROTEIN


PYEGA_ECOLI
HYPOTHETICAL IN DCD

ESCHERICHIA COLI

 145-172



3′ REGION


PYEHA_ECOLI
HYPOTHETICAL 36.9 KD

ESCHERICHIA COLI

 69-106
 283-310



PROTEIN


PYEHB_ECOLI
HYPOTHETICAL 92.3 KD

ESCHERICHIA COLI

 151-178
 501-545



PROTEIN


PYEHD_ECOLI
HYPOTHETICAL 19.1 KD

ESCHERICHIA COLI

 96-123



PROTEIN


PYEHF_ECOLI
HYPOTHETICAL 141.0 KD

ESCHERICHIA COLI

 543-570



PROTEIN


PYEHI_ECOLI
HYPOTHETICAL 138.1 KD

ESCHERICHIA COLI

 35-70
 102-129



PROTEIN


PYEHU_ECOLI
HYPOTHETICAL 62.1 KD

ESCHERICHIA COLI

 326-353



PROTEIN


PYEIC_ECOLI
HYPOTHETICAL 33.6 KD

ESCHERICHIA COLI

 46-80



PROTEIN


PYEIF_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 61-88


PYEIJ_ECOLI
HYPOTHETICAL 43.4 KD

ESCHERICHIA COLI

 15-42



PROTEIN


PYEJA_ECOLI
HYPOTHETICAL ABC

ESCHERICHIA COLI

 83-110



TRANSPORTER


PYEJF_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 453-480


PYEJO_ECOLI
HYPOTHETICAL 91.2 KD

ESCHERICHIA COLI

 399-433



PROTEIN


PYFHD_ECOLI
HYPOTHETICAL 40.6 KD

ESCHERICHIA COLI

 175-202



PROTEIN


PYFU2_BACST
HYPOTHETICAL 30.6 KD

BACILLUS STEAROTHERMOPHILUS

 133-160



PROTEIN


PYFXK_BRAJA
HYPOTHETICAL PROTEIN

BRADYRHIZOBIUM JAPONICUM

 109-150


PYGAP_BACME
HYPOTHETICAL 37.7 KD

BACILLUS MEGATERIUM

 40-67



PROTEIN


PYGFD_ECOLI
HYPOTHETICAL 29.4 KD

ESCHERICHIA COLI

 214-241



PROTEIN


PYGGB_ECOLI
HYPOTHETICAL 30.9 KD

ESCHERICHIA COLI

 225-252



PROTEIN


PYGGG_ECOLI
HYPOTHETICAL 31.8 KD

ESCHERICHIA COLI

 209-236



PROTEIN


PYG12_BACTU
HYPOTHETICAL 22.8 KD

BACILLUS THURINGIENSIS

 26-61



PROTEIN


PYG12_PSEPU
HYPOTHETICAL 32.4 KD

PSEUDOMONAS PUTIDA

 145-172



PROTEIN


PYGiF_ECOLI
HYPOTHETICAL 48.4 KD

ESCHERICHIA COLI

 223-264



PROTEIN


PYGL4_BACST
HYPOTHETICAL 35.5 KD

BACILLUS STEAROTHERMOPHILUS

  6-33



PROTEIN


PYGL5_BACST
HYPOTHETICAL PROTEIN

BACILLUS STEAROTHERMOPHILUS

 182-209


PYGLN_BACCE
HYPOTHETICAL 15 KD

BACILLUS CEREUS

 79-124



PROTEIN


PYGRD_BACSU
HYPOTHETICAL PROTEIN

BACILLUS SUBTILIS

 20-47


PYGRE_BACSU
HYPOTHETICAL 17.1 KD

BACILLUS SUBTILIS

 84-111



PROTEIN


PYGRP_BACSU
HYPOTHETICAL 39.0 KD

BACILLUS SUBTILIS

 98-125



PROTEIN


PYGRP_CLOAB
HYPOTHETICAL 38.8 KD

CLOSTRIDIUM ACETOBUTYLICUM

 160-210



PROTEIN


PYGT2_STRMU
HYPOTHETICAL PROTEIN 2

STREPTOCOCCUS MUTANS

  4-40
 110-138
 235-262


PYHAB_ECOLI
HYPOTHETICAL 20.6 KD

ESCHERICHIA COLI

 20-66



PROTEIN


PYHAC_ECOLI
HYPOTHETICAL 45.2 KD

ESCHERICHIA COLI

 69-96



PROTEIN


PYHAF_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 44-71
 138-165


PYHBG_ECOLI
PROBABLE ABC

ESCHERICHIA COLI

 176-203



TRANSPORTER


PYHBG_PSEPU
PROBABLE ABC

PSEUDOMONAS PUTIDA

 74-101
 106-133
 147-174



TRANSPORTER


PYHBG_THIFE
PROBABLE ABC

THIOBACILLUS FERROOXIDANS

 113-140



TRANSPORTER


PYHDF_ECOLI
HYPOTHETICAL 55.4 KD

ESCHERICHIA COLI

 267-297



PROTEIN


PYHEM_BACSU
HYPOTHETICAL 32.0 KD

BACILLUS SUBTILIS

 222-253



PROTEIN


PYHET_ANASP
HYPOTHETICAL PROTEIN

ANABAENA SP
 72-99


PYHHA_ECOLI
HYPOTHETICAL 16.6 KD

ESCHERICHIA COLI

 56-84



PROTEIN


PYHHG_ECOLI
HYPOTHETICAL 15.1 KD

ESCHERICHIA COLI

 43-77



PROTEIN


PYHHH_ECOLI
HYPOTHETICAL 14.5 KD

ESCHERICHIA COLI

 43-73



PROTEIN


PYHI1_LACLA
HYPOTHETICAL PROTEIN

LACTOCOCCUS LACTIS

 167-194


PYHI3_LACLA
HYPOTHETICAL 38.0 KD

LACTOCOCCUS LACTIS

 90-124
 132-159



PROTEIN


PYHI6_LACLA
HYPOTHETICAL 30.7 KD

LACTOCOCCUS LACTIS

 92-148



PROTEIN


PYHI8_LACLA
HYPOTHETICAL 30.7 KD

LACTOCOCCUS LACTIS

 77-104
 156-183



PROTEIN


PYHLB_STAAU
HYPOTHETICAL PROTEIN

STAPHYLOCOCCUS AUREUS

 18-67


PYHLB_VIBCH
HYPOTHETICAL 18.3 KD

VIBRIO CHOLERAE

 99-126



PROTEIN


PYHMF_METFE
HYPOTHETICAL 32.2 KD

METHANOTHERMUS FERVIDUS

 106-133



PROTEIN


PYHS1_CLOAB
HYPOTHETICAL 11.0 KD

CLOSTRIDIUM ACETOBUTYLICUM

 41-85



PROTEIN


PYHSA_CLOAB
HYPOTHETICAL 20.6 KD

CLOSTRIDIUM ACETOBUTYLICUM

 98-125



PROTEIN


PYHSC_CLOAB
HYPOTHETICAL 42.4 KD

CLOSTRIDIUM ACETOBUTYLICUM

 25-52
 208-253
 276-310



PROTEIN


PYHV1_LACHE
HYPOTHETICAL PROTEIN

LACTOBACILLUS HELVETICUS

 93-120
 127-154


PYHYA_PSESN
HYPOTHETICAL PROTEIN

PSEUDOMONAS SP
 217-266


PYI11_HALHA
HYPOTHETICAL 38.0 KD

HALOBACTERIUM HALOBIUM

 245-272



PROTEIN


PYI32_MYCTU
IS986 HYPOTHETICAL 6.6 KD

MYCOBACTERIUM TUBERCULOSIS

 19-46



PROTEIN


PYI42_PSEAY
HYPOTHETICAL 42.6 KD

PSEUDOMONAS AMYLODERAMOSA

  9-36



PROTEIN


PYI48_METSM
ISM1 HYPOTHETICAL 48.3 KD

METHANOBREVIBACTER SMITHII

 73-100
 154-184
 338-365



PROTEIN


PYI52_HALHA
HYPOTHETICAL 31 KD

HALOBACTERIUM HALOBIUM

 86-113



PROTEIN


PYIBB_ECOLI
HYPOTHETICAL 34.0 KD

ESCHERICHIA COLI

 202-239



PROTEIN


PYIBD_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

  9-43


PYIBF_ECOLI
HYPOTHETICAL 22.6 KD

ESCHERICHIA COLI

 131-158



PROTEIN


PYIBG_ECOLI
HYPOTHETICAL 18.1 KD

ESCHERICHIA COLI

 70-97



PROTEIN


PYICC_ECOLI
HYPOTHETICAL 33.2 KD

ESCHERICHIA COLI

 143-170



PROTEIN


PYICD_ECOLI
HYPOTHETICAL 31.1 KD

ESCHERICHIA COLI

 132-159



PROTEIN


PYICH_ECOLI
HYPOTHETICAL 62.3 KD

ESCHERICHIA COLI

 408-435



PROTEIN


PYICI_ECOLI
HYPOTHETICAL 88.1 KD

ESCHERICHIA COLI

 122-149



PROTEIN


PYICN_ECOLI
HYPOTHETICAL 18.2 KD

ESCHERICHIA COLI

 76-103



PROTEIN


PYICO_ECOLI
HYPOTHETICAL 49.9 KD

ESCHERICHIA COLI

 320-347



PROTEIN


PYIDB_ECOLI
HYPOTHETICAL 13.8 KD

ESCHERICHIA COLI

 34-78



PROTEIN


PYIDE_ECOLI
HYPOTHETICAL 58.9 KD

ESCHERICHIA COLI

 86-113
 182-209
 277-304



PROTEIN


PYIDI_ECOLI
HYPOTHETICAL 15.7 KD

ESCHERICHIA COLI

 56-83



PROTEIN


PYIDK_ECOLI
HYPOTHETICAL 62.1 KD

ESCHERICHIA COLI

  2-39



PROTEIN


PYIDP_ECOLI
HYPOTHETICAL 27.3 KD

ESCHERICHIA COLI

 63-97



PROTEIN


PYIEA_ECOLI
HYPOTHETICAL 49.2 KD

ESCHERICHIA COLI

 221-248



PROTEIN


PYIEC_ECOLI
HYPOTHETICAL 60.6 KD

ESCHERICHIA COLI

 20-58
 270-297



PROTEIN


PYIEC_ERWCH
HYPOTHETICAL PROTEIN

ERWINIA CHRYSANTHEMI

 22-67


PYIED_ECOLI
HYPOTHETICAL 34.8 KD

ESCHERICHIA COLI

 86-120



PROTEIN


PYIEG_ECOLI
HYPOTHETICAL 46.9 KD

ESCHERICHIA COLI

 293-327



PROTEIN


PYIEH_ECOLI
HYPOTHETICAL 24.7 KD

ESCHERICHIA COLI

 51-78



PROTEIN


PYIEM_ECOLI
HYPOTHETICAL 15.0 KD

ESCHERICHIA COLI

 73-105



PROTEIN


PYIEO_ECOLI
HYPOTHETICAL 51.5 KD

ESCHERICHIA COLI

 201-242
 380-407



PROTEIN


PYIFC_ECOLI
HYPOTHETICAL 39.6 KD

ESCHERICHIA COLI

 175-202



PROTEIN


PYIGJ_ECOLI
HYPOTHETICAL 14.0 KD

ESCHERICHIA COLI

 51-92



PROTEIN


PYIGM_ECOLI
HYPOTHETICAL 33.7 KD

ESCHERICHIA COLI

 120-154



PROTEIN


PYIGN_ECOLI
HYPOTHETICAL 54.7 KD

ESCHERICHIA COLI

 207-234



PROTEIN


PYIGO_ECOLI
HYPOTHETICAL 28.1 KD

ESCHERICHIA COLI

 67-94



PROTEIN


PYIGP_ECOLI
HYPOTHETICAL 22.3 KD

ESCHERICHIA COLI

 173-200



PROTEIN


PYIGT_ECOLI
HYPOTHETICAL 27.8 KD

ESCHERICHIA COLI

 132-159



PROTEIN


PYIHB_ECOLI
HYPOTHETICAL 21.2 KD

ESCHERICHIA COLI

 13-40



PROTEIN


PYIHD_ECOLI
HYPOTHETICAL 10.3 KD

ESCHERICHIA COLI

 28-55



PROTEIN


PYIHF_ECOLI
HYPOTHETICAL 54.1 KD

ESCHERICHIA COLI

 272-306



PROTEIN


PYIHI_ECOLI
HYPOTHETICAL 19.1 KD

ESCHERICHIA COLI

 112-139



PROTEIN


PYIHK_ECOLI
HYPOTHETICAL 65.4 KD

ESCHERICHIA COLI

  4-31



PROTEIN


PYIHM_ECOLI
HYPOTHETICAL 36.9 KD

ESCHERICHIA COLI

 83-110
 120-154
 297-324



PROTEIN


PYIHO_ECOLI
HYPOTHETICAL 81.8 KD

ESCHERICHIA COLI

 612-646



PROTEIN


PYIHP_ECOLI
HYPOTHETICAL 53.1 KD

ESCHERICHIA COLI

 357-384



PROTEIN


PYIHV_ECOLI
HYPOTHETICAL 31.9 KD

ESCHERICHIA COLI

 72-99



PROTEIN


PYIHX_ECOLI
HYPOTHETICAL 23.5 KD

ESCHERICHIA COLI

  9-36



PROTEIN


PYIHZ_ECOLI
HYPOTHETICAL 15.9 KD

ESCHERICHIA COLI

  6-33



PROTEIN


PYIIP_ECOLI
HYPOTHETICAL 32.9 KD

ESCHERICHIA COLI

 22-63



PROTEIN


PYIIU_ECOLI
HYPOTHETICAL 9.6 KD

ESCHERICHIA COLI

 28-71



PROTEIN


PYIJC_ECOLI
HYPOTHETICAL 26.6 KD

ESCHERICHIA COLI

 136-163



PROTEIN


PYIJH_ECOLI
HYPOTHETICAL 78.3 KD

ESCHERICHIA COLI

 225-263



PROTEIN


PYIJK_ECOLI
HYPOTHETICAL 11.2 KD

ESCHERICHIA COLI

 26-53



PROTEIN


PYIJO_ECOLI
HYPOTHETICAL 32.1 KD

ESCHERICHIA COLI

 214-241



PROTEIN


PYIJP_ECOLI
HYPOTHETICAL 66.6 KD

ESCHERICHIA COLI

 110-137
 419-446



PROTEIN


PYINL_LISMO
HYPOTHETICAL 26.8 KD

LISTERIA MONOCYTOGENES

  7-34



PROTEIN


PYIS1_SHISO
INSERTION ELEMENT IS600

SHIGELLA SONNEI

 62-89


PYIS1_STRCO
IS110 HYPOTHETICAL 43.6 KD

STREPTOMYCES COELICOLOR

 125-152



PROTEIN


PYIS3_SHISO
INSERTION LEMENT IS629

SHIGELLA SONNEI

 66-100


PYISP_BACSP
HYPOTHETICAL 41.2 KD

BACILLUS SP
 312-339



PROTEIN


PYJAG_ECOLI
HYPOTHETICAL 22.6 KD

ESCHERICHIA COLI

 51-78



PROTEIN


PYJAI_ECOLI
HYPOTHETICAL 20.4 KD

ESCHERICHIA COLI

 88-122



PROTEIN


PYJBH_ECOLI
HYPOTHETICAL 78.5 KD

ESCHERICHIA COLI

 93-120



PROTEIN


PYJBL_ECOLI
HYPOTHETICAL 9.7 KD

ESCHERICHIA COLI

 30-57



PROTEIN


PYJBM_ECOLI
HYPOTHETICAL 26.7 KD

ESCHERICHIA COLI

 112-149



PROTEIN


PYJBQ_ECOLI
HYPOTHETICAL 15.7 KD

ESCHERICHIA COLI

  2-29



PROTEIN


PYJCC_ECOLI
HYPOTHETICAL 60.8 KD

ESCHERICHIA COLI

 38-65
 414-441
 451-492



PROTEIN


PYJCE_ECOLI
HYPOTHETICAL 60.5 KD

ESCHERICHIA COLI

 454-481



PROTEIN


PYJCG_ECOLI
HYPOTHETICAL 59.2 KD

ESCHERICHIA COLI

 394-421



PROTEIN


PYJCO_ECOLI
HYPOTHETICAL 25.1 KD

ESCHERICHIA COLI

 91-118



PROTEIN


PYJCP_ECOLI
HYPOTHETICAL 53.4 KD

ESCHERICHIA COLI

 242-269



PROTEIN


PYJCS_ECOLI
HYPOTHETICAL 73.7 KD

ESCHERICHIA COLI

 366-396



PROTEIN


PYJCW_ECOLI
HYPOTHETICAL ABC

ESCHERICHIA COLI

 50-84



TRANSPORTER


PYJDA_ECOLI
HYPOTHETICAL 84.2 KD

ESCHERICHIA COLI

  2-29
 451-485



PROTEIN


PYJDB_ECOLI
HYPOTHETICAL PROTEIN

ESCHERICHIA COLI

 103-134



PRECURSOR


PYJJA_ECOLI
HYPOTHETICAL 17.5 KD

ESCHERICHIA COLI

 35-69
 88-129



PROTEIN


PYKAB_BACFI
HYPOTHETICAL 48.8 KD

BACILLUS FIRMUS

 321-355



PROTEIN


PYLA1_LACAC
HYPOTHETICAL PROTEIN

LACTOBACILLUS ACIDOPHILUS

 47-74


PYLA2_LACAC
HYPOTHETICAL 14.5 KD

LACTOBACILLUS ACIDOPHILUS

 15-42



PROTEIN


PYLA3_LACAC
HYPOTHETICAL 14.4 KD

LACTOBACILLUS ACIDOPHILUS

 47-74



PROTEIN


PYLAC_SULSO
HYPOTHETICAL 24.4 KD

SULFOLOBUS SOLFATARICUS

 23-50



PROTEIN


PYLP3_PSEPU
HYPOTHETICAL 44.7 KD

PSEUDOMONAS PUTIDA

 186-213
 314-341



PROTEIN


PYLPA_YEREN
YLPA LIPOPROTEIN

YERSINIA ENTEROCOLITICA

 184-221



PRECURSOR


PYLT3_ANAVA
HYPOTHETICAL 22.6 KD

ANABAENA VARIABILIS

 172-199



PROTEIN


PYLUD_LACLA
HYPOTHETICAL 29.7 KD

LACTOCOCCUS LACTIS

 35-70



PROTEIN


PYME2_BACSU
HYOPTHETICAL 35.3 KD

BACILLUS SUBTILIS

 52-79



PROTEIN


PYMG2_MYCGE
HYPOTHETICAL 114.4 KD

MYCOPLASMA GENITALIUM

 56-83
 159-193
 420-445
 981-1008



PROTEIN PRECURSOR


PYNGA_CLOPE
HYPOTHETICAL PROTEIN

CLOSTRIDIUM PERFRINGENS

 139-166


PYNGB_CLOPE
HYPOTHETICAL 31.2 KD

CLOSTRIDIUM PERFRINGENS

 12-49
 63-97
 182-211



PROTEIN


PYNI1_METTL
HYPOTHETICAL PROTEIN

METHANOCOCCUS

 55-89





THERMOLITHOTROPHICUS



PYNQ1_PARDE
HYPOTHETICAL 9.3 KD

PARACOCCUS DENITRIFICANS

 52-86



PROTEIN


PYNT3_ANASP
HYPOTHETICAL 28.1 KD

ANABAENA SP
 171-198



PROTEIN


PYNT5_ANASP
HYPOTHETICAL PROTEIN

ANABAENA SP
 87-165


PYOHD_ECOLI
HYPOTHETICAL 21.4 KD

ESCHERICHIA COLI

  5-32



PROTEIN


PYOHG_ECOLI
HYPOTHETICAL 43.3 KD

ESCHERICHIA COLI

 104-171
 289-316



PROTEIN


PYOJA_ECOLI
HYPOTHETICAL 15.0 KD

ESCHERICHIA COLI

 17-44



PROTEIN


PYOJE_ECOLI
HYPOTHETICAL 93.5 KD

ESCHERICHIA COLI

 221-248



PROTEIN


PYOJF_ECOLI
HYPOTHETICAL 9.5 KD

ESCHERICHIA COLI

 41-82



PROTEIN


PYOJH_ECOLI
HYPOTHETICAL 54.3 KD

ESCHERICHIA COLI

 145-193



PROTEIN


PYOJJ_ECOLI
HYPOTHETICAL 36.2 KD

ESCHERICHIA COLI

 94-121



PROTEIN


PYOMA2_PHOS9
HYPOTHETICAL PROTEIN IN

PHOTOBACTERIUM SP
 32-59



OMPH 3′ REGION


PYOPH_YEREN
PROTEIN-TYROSINE

YERSINIA ENTEROCOLITICA

 63-105



PHOSPHATASE YOPH


PYOPH_YERPS
PROTEIN-TYROSINE

YERSINIA PSEUDOTUBERCULOSIS

 63-105



PHOSPHATASE YOPH


PYOPN_YEREN
OUTER MEMBRANE PROTEIN

YERSINIA ENTEROCOLITICA

 23-50
 66-93
 235-262



YOPN


PYOPN_YERPS
OUTER MEMBRANE PROTEIN

YERSINIA PSEUDOTUBERCULOSIS

 23-50
 66-93
 235-262



YOPN


PYOPQ_YEREN
YOPQ PROTEIN PRECURSOR

YERSINIA ENTEROCOLITICA

 61-88


PYORA_HAEIN
HYPOTHETICAL 31.5 KD

HAEMOPHILUS INFLUENZAE

 147-174



PROTEIN


PYORA_LISMO
HYPOTHETICAL 25.6 KD

LISTERIA MONOCYTOGENES

 32-77



PROTEIN


PYORA_PYRWO
HYPOTHETICAL 24.7 KD

PYROCOCCUS WOESEI

 183-210



PROTEIN


PYORB_HAEIN
HYPOTHETICAL 19.8 KD

HAEMOPHILUS INFLUENZAE

 39-66



PROTEIN


PYORC_HAEIN
HYPOTHETICAL 19.9 KD

HAEMOPHILUS INFLUENZAE

 49-79



PROTEIN


PYORE_HAEIN
8 KD PROTEIN

HAEMOPHILUS INFLUENZAE

 47-74
 82-109


PYORF_HAEIN
26.8 KD PROTEIN

HAEMOPHILUS INFLUENZAE

 199-229


PYORH_HAEIN
HYPOTHETICAL 13.7 KD

HAEMOPHILUS INFLUENZAE

  7-34



PROTEIN


PYORI_HAEIN
95.4 KD PROTEIN

HAEMOPHILUS INFLUENZAE

 416-450
 688-722


PYORQ_BACSU
HYPOTHETICAL 34 KD

BACILLUS SUBTILIS

 148-175



PROTEIN


PYORX_PYRWO
HYPOTHETICAL PROTEIN

PYROCOCCUS WOESEI

 66-93


PYORZ_LISMO
HYPOTHETICAL 16.9 KD

LISTERIA MONOCYTOGENES

 27-54



PROTEIN


PYP15_STAAU
HYPOTHETICAL 15.5 KD

STAPHYLOCOCCUS AUREUS

 71-98
 110-137



PROTEIN


PYP23_BACSU
HYPOTHETICAL 22.5 KD

BACILLUS SUBTILIS

 57-84



PROTEIN


PYP23_STAAU
HYPOTHETICAL 22.2 KD

STAPHYLOCOCCUS AUREUS

 29-70



PROTEIN


PYP2A_STAAU
HYPOTHETICAL 26.9 KD

STAPHYLOCOCCUS AUREUS

 34-104



PROTEIN


PYP2B_STAAU
HYPOTHETICAL 27.0 KD

STAPHYLOCOCCUS AUREUS

 23-60
 62-89
 179-206



PROTEIN


PYP2C_STAAU
HYPOTHETICAL 27.7 KD

STAPHYLOCOCCUS AUREUS

 13-83
 129-176



PROTEIN


PYP7_AGRT4
HYPOTHETICAL PROTEIN 7

AGROBACTERIUM TUMEFACIENS

 29-56


PYPA2_LEGPN
HYPOTHETICAL PROTEIN

LEGIONELLA PNEUMOPHILA

 94-135


PYPAS_ENTFA
HYPOTHETICAL 13 KD

ENTEROCOCCUS FAECALIS

 79-106



PROTEIN


PYPA_BACAN
HYPOTHETICAL 21.6 KD

BACILLUS ANTHRACIS

 13-47
 115-162



PROTEIN


PYPC1_ECOLI
HYPOTHETICAL 27.6 KD

ESCHERICHIA COLI

  5-32



PROTEIN


PYPDA_BACSU
HYPOTHETICAL 27.3 KD

BACILLUS SUBTILIS

 184-222



PROTEIN


PYPFT_ECOLI
HYPOTHETICAL 12.6 KD

ESCHERICHIA COLI

 16-43



PROTEIN


PYPH1_SYNP2
HYPOTHETICAL 18.1 KD

SYNECHOCOCCUS SP
 34-61



PROTEIN


PYP16_CLOPE
HYPOTHETICAL 19.7 KD

CLOSTRIDIUM PERFRINGENS

  7-34
 43-77
 83-149



PROTEIN


PYP19_CLOPE
HYPOTHETICAL 14.5 KD

CLOSTRIDIUM PERFRINGENS

  2-59



PROTEIN


PYPIX_CLOPE
HYPOTHETICAL 38.4 KD

CLOSTRIDIUM PERFRINGENS

 110-137
 263-290
 303-340



PROTEIN


PYPIY_PSEAE
HYPOTHETICAL 38.5 KD

PSEUDOMONAS AERUGINOSA

 22-52



PROTEIN


PYPP_BACSU
HYPOTHETICAL PROCESSING

BACILLUS SUBTILIS

 329-356



PROTEASE


PYPQQ_KLEPN
HYPOTHETICAL PROTEIN

KLEBSIELLA PNEUMONIAE

 243-270


PYPS2_PLEBO
HYPOTHETICAL 13.1 KD

PLECTONEMA BORYANUM

 27-54



PROTEIN


PYPV1_METTF
HYPOTHETICAL 40.7 KD

METHANOBACTERIUM

 58-85
 308-335



PROTEIN

THERMOFORMICICUM



PYPV3_METTF
HYPOTHETICAL 22.5 KD

METHANOBACTERIUM

  3-30



PROTEIN

THERMOFORMICICUM



PYPV7_METTF
HYPOTHETICAL 17.3 KD

METHANOBACTERIUM

 69-117



PROTEIN

THERMOFORMICICUM



PYPVB_METTF
HYPOTHETICAL 49.6 KD

METHANOBACTERIUM

 333-360
 389-430



PROTEIN

THERMOFORMICICUM



PYPYB_BACSU
HYPOTHETICAL 72.4 KD

BACILLUS SUBTILIS

 602-636



PROTEIN


PYPZ1_METTF
HYPOTHETICAL 40.6 KD

METHANOBACTERIUM

 58-85
 308-335



PROTEIN

THERMOFORMICICUM



PYPZ2_METTF
HYPOTHETICAL 33.1 KD

METHANOBACTERIUM

 38-65
 154-188



PROTEIN

THERMOFORMICICUM



PYPZ5_METTF
HYPOTHETICAL 54.1 KD

METHANOBACTERIUM

 193-220
 226-253
 381-408



PROTEIN

THERMOFORMICICUM



PYPZ7_METTF
HYPOTHETICAL 9.7 KD

METHANOBACTERIUM

  5-78



PROTEIN

THERMOFORMICICUM



PYR18_THEPE
HYPOTHETICAL 18.7 KD

THERMOFILUM PENDENS

 82-109



PROTEIN


PYRB1_HALCU
HYPOTHETICAL 40 KD

HALOBACTERIUM CUTIRUBRUM

 20-51



GTP-BINDING PROTEIN


PYREC_SYNP2
HYPOTHETICAL 28.7 KD

SYNECHOCOCCUS SP
 49-76



PROTEIN


PYRF0_SALTY
HYPOTHETICAL 40.6 KD

SALMONELLA TYPHIMURIUM

 143-190



PROTEIN


PYRF2_SALTY
HYPOTHETICAL 51.0 KD

SALMONELLA TYPHIMURIUM

 428-455



PROTEIN


PYRF5_SALTY
HYPOTHETICAL 20.6 KD

SALMONELLA TYPHIMURIUM

 29-56



PROTEIN


PYRF6_SALTY
HYPOTHETICAL 36.6 KD

SALMONELLA TYPHIMURIUM

 130-157



PROTEIN


PYRG2_LACLA
HYPOTHETICAL PROTEIN

LACTOCOCCUS LACTIS

 140-167


PYRL1_METVA
HYPOTHETICAL PROTEIN

METHANOCOCCUS VANNIELII

 40-93
 129-156


PYRP2_METVA
HYPOTHETICAL 11.6 KD

METHANOCOCCUS VANNIELII

 13-40



PROTEIN


PYRP2_SULAC
HYPOTHETICAL 11.5 KD

SULFOLOBUS ACIDOCALDARIUS

  5-51



PROTEIN


PYRP3_SULAC
HYPOTHETICAL 14.5 KD

SULFOLOBUS ACIDOCALDARIUS

 37-71



PROTEIN


PYRTP_BACSU
HYPOTHETICAL 25.3 KD

BACILLUS SUBTILIS

 29-56



PROTEIN


PYRTS_BACSU
HYPOTHETICAL 11.4 KD

BACILLUS SUBTILIS

  3-30
 44-81



PROTEIN


PYSCB_YEREN
HYPOTHETICAL YSC OPERON

YERSINIA ENTEROCOLITICA

 90-121



PROTEIN B


PYSCC_YEREN
YSC OPERON PROTEIN C

YERSINIA ENTEROCOLITICA

 38-72
 365-399



PRECURSOR


PYSCD_YEREN
YSC OPERON PROTEIN D

YERSINIA ENTEROCOLITICA

 242-269


PYSCH_YEREN
YSC OPERON PROTEIN H

YERSINIA ENTEROCOLITICA

 28-58


PYSCH_YERPS
YSC OPERON PROTEIN H

YERSINIA PSEUDOTUBERCULOSIS

 28-58


PYSCI_YEREN
YSC OPERON PROTEIN I

YERSINIA ENTEROCOLITICA

 49-76


PYSCI_YERPS
YSC OPERON PROTEIN I

YERSINIA PSEUDOTUBERCULOSIS

 49-76


PYSCJ_YERPS
YSC OPERON LIPOPROTEIN J

YERSINIA ENTEROCOLITICA

 99-126



PRECURSOR


PYSCJ_YEREN
YSC OPERON LIPOPROTEIN J

YERSINIA PSEUDOTUBERCULOSIS

 99-126



PRECURSOR


PYSCL_YEREN
YSC OPERON PROTEIN L

YERSINIA ENTEROCOLITICA

 41-68


PYSCL_YERPS
YSC OPERON PROTEIN L

YERSINIA PSEUDOTUBERCULOSIS

 41-68


PYSMA_SERMA
HYPOTHETICAL 9.5 KD

SERRATIA MARCESCENS

 11-70



PROTEIN


PYSO2_DESAM
HYPOTHETICAL 28.3 KD

DESULFUROLOBUS AMBIVALENS

 68-109



PROTEIN


PYSO3_DESAM
HYPOTHETICAL PROTEIN

DESULFUROLOBUS AMBIVALENS

 65-155


PYSP2_LEPIT
HYPOTHETICAL PROTEIN

LEPTOSPIRA INTERROGANS

  6-33
 60-94


PYSR1_MYCMY
HYPOTHETICAL PROTEIN

MYCOPLASMA MYCOIDES

 35-99
 185-227
 300-327


PYSY3_BACSU
HYPOTHETICAL 19.6 KD

BACILLUS SUBTILIS

 72-99



PROTEIN


PYSYN_METFE
HYPOTHETICAL PROTEIN

METHANOTHERMUS FERVIDUS

 78-105


PYT37_STRFR
HYPOTHETICAL 37.1 KD

STREPTOMYCES FRADIAE

 246-273



PROTEIN


PYTDK_BACSU
HYPOTHETICAL 35.6 KD

BACILLUS SUBTILIS

 244-271
 279-306



PROTEIN


PYTRE_LEPBI
HYPOTHETICAL 22 KD

LEPTOSPIRA BIFLEXA

 84-113



PROTEIN


PYTRP_LACLA
HYPOTHETICAL 13.3 KD

LACTOCOCCUS LACTIS

 76-112



PROTEIN


PYTS1_BACSU
HYPOTHETICAL 20 KD

BACILLUS SUBTILIS

 37-64



PROTEIN


PYTSF_SPICI
HYPOTHETICAL 23.8 KD

SPIROPLASMA CITRI

 102-149



PROTEIN


PYX04_BACSU
HYPOTHETICAL 12.8 KD

BACILLUS SUBTILIS

 37-64
 68-95



PROTEIN


PYX06_BACSU
HYPOTHETICAL 21.0 KD

BACILLUS SUBTILIS

 142-169



PROTEIN


PYX13_BACSU
HYPOTHETICAL 26.0 KD

BACILLUS SUBTILIS

 17-51



PROTEIN


PYX15_BACSU
HYPOTHETICAL 61.8 KD

BACILLUS SUBTILIS

 165-207
 262-289



PROTEIN


PYX18_BACSU
HYPOTHETICAL 66.8 KD

BACILLUS SUBTILIS

  3-30
 34-61
 94-142



PROTEIN


PYX19_BACSU
HYPOTHETICAL 31.3 KD

BACILLUS SUBTILIS

 56-83
 85-112



PROTEIN


PYX20_BACSU
HYPOTHETICAL 23.2 KD

BACILLUS SUBTILIS

 24-58



PROTEIN


PYX12_ANASP
HYPOTHETICAL 18.9 KD

ANABAENA SP
 77-104



PROTEIN


PYXYB_CALSA
HYPOTHETICAL 10.7 KD

CALDOCELLUM

  9-39



PROTEIN

SACCHAROLYTICUM



PYXYC_CALSA
HYPOTHETICAL PROTEIN

CALDOCELLUM

 41-94





SACCHAROLYTICUM



PYZE1_ECOLI
HYPOTHETICAL 16.7 KD

ESCHERICHIA COLI

 41-78



PROTEIN
















TABLE IX







107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY FOR ALL HUMAN PROTEINS

















PCGENE
107 × 178 × 4 Motif Search on All Human Protein Sequences











FILE NAME
PROTEIN
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9





P143F_HUMAN
14-3-3 PROTEIN ETA (PROTEIN AS1) (FRAGMENT).
101-135










P143S_HUMAN
14-3-3 PROTEIN HOMOLOG STRATIFIN.
45-72


P143T_HUMAN
14-3-3 PROTEIN THETA (14-3-3 PROTEIN T-CELL) (HS1 PROTEIN).
61-92


P143Z_HUMAN
14-3-3 PROTEIN ZETA (PROTEIN KINASE C INHIBITOR
28-55



PROTEIN-1) (KCIP-1)


P1A23_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-114



A-29 (AW-19) A*2901 ALPHA CHAIN


P1A24_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



A-29 (AW-19) A*2902 ALPHA CHAIN


P1B02_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



B-7 B*0702 ALPHA CHAIN


P1B05_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114
148-182



B-13 B*1301 ALPHA CHAIN


P1B10_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



BW-75 (B-15) B*1502 ALPHA CHAIN


P1B11_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



BW-72 (BW-70) B*1503 ALPHA


P1B12_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 76-107



B-62 B*1504 ALPHA CHAIN


P1B13_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-18 B*1801 ALPHA CHAIN


P1B21_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-35 B*3501 ALPHA CHAIN


P1B22_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-35 B*3502 ALPHA CHAIN


P1B23_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-35 B*3503 ALPHA CHAIN


P1B24_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 76-107



B-35 B*3504 ALPHA CHAIN


P1B25_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-35 B*3505 ALPHA CHAIN


P1B26_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-35 B*3506 ALPHA CHAIN


P1B27_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-35 B*3507 ALPHA CHAIN


P1B28_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-35 B*3508 ALPHA CHAIN


P1B29_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 88-115



B-37 B*3701 ALPHA CHAIN


P1B32_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



B-39 B*3902 ALPHA CHAIN


P1B33_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
60-91



BW-60 (B-40) B*4001 ALPHA CHAIN


P1B34_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-40 B*4002 ALPHA CHAIN


P1B35_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-40 B*4003 ALPHA CHAIN


P1B36_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-40 B*4004 ALPHA CHAIN


P1B38_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



BW-41 B*4101 ALPHA CHAIN


P1B39_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-42 B*4201 ALPHA CHAIN


P1B40_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-111



BW-44 (B-12) B*4401 ALPHA CHAIN


P1B41_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-44 (B-12) B*4402 ALPHA CHAIN


P1B42_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-44 (B-12) B*4403 ALPHA CHAIN


P1B43_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



BW-45 (B-12) B*4501 ALPHA CHAIN


P1B44_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-46 B*4601 ALPHA CHAIN


P1B45_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 88-115



BW-47 B*4701 ALPHA CHAIN


P1B46_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



B-48 B*4801 ALPHA CHAIN


P1B47_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



B-49 (B-21) B*4901 ALPHA CHAIN


P1B48_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 84-115



BW-50 (B-21) B*5001 ALPHA CHAIN


P1B53_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-52 (B-5) B*5201 ALPHA CHAIN


P1B55_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-54 (BW-22) B*5401 ALPHA


P1B56_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-55 (BW-22) B*5501 ALPHA


P1B57_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-55 (BW-22) B*5502 ALPHA


P1B58_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-56 (BW-22) B*5601 ALPHA


P1B59_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



BW-56 (BW-22) B*5602 ALPHA


P1C01_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



CW-1 CW*0101 ALPHA CHAIN


P1C02_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



CW-1 CW*0102 ALPHA CHAIN


P1C03_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



CW-2 CW*0201 ALPHA CHAIN


P1C04_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



CW-2 CW*0202 ALPHA CHAIN


P1C06_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



CW-3 CW*0302 ALPHA CHAIN


P1C12_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



CW-8 CW*0801 ALPHA CHAIN


P1C13_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



CW-8 CW*0802 ALPHA CHAIN


P1C14_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



CW-8 CW*0803 ALPHA CHAIN


P1C17_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN,
 87-114



CW*1401 ALPHA CHAIN PRECURSOR


P25A6_HUMAN
69/71 KD (2′-5′) OLIGOADENYLATE
593-620



SYNTHETASE


P2AAA_HUMAN
PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT,
12-49
54-81



ALPHA ISOFORM


P2AAB_HUMAN
PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT,
 9-36
41-68
 79-106



BETA ISOFORM


P2ABA_HUMAN
PROTEIN PHOSPHATASE PP2A, 55 KD REGULATORY SUBUNIT,
177-218



ALPHA ISOFORM


P411_HUMAN
ERYTHROID PROTEIN 4.1 (BAND 4.1, ERTHROCYTE FORM).
32-66


P412_HUMAN
NON-ERYTHROID PROTEIN 4.1 (BAND 4.1, LYMPHOID FORM)
 3-30
708-735


P42_HUMAN
ERYTHROCYTE MEMBRANE PROTEIN BAND 4.2
173-200
518-545


P4F2_HUMAN
4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN (4F2HC)
281-322



(LYMPHOCYTE ACTIVATION


P5H1E_HUMAN
5-HYDROXYTRYPTAMINE 1E RECEPTOR (5-HT-1E) (SEROTONIN
311-338



RECEPTOR)


P5H1F_HUMAN
5-HYDROXYTRYPTAMINE 1F RECEPTOR (5-HT-1F) (SEROTONIN
222-253



RECEPTOR)


P5H2A_HUMAN
5-HYDROXYTRYPTAMINE 2A RECEPTOR (5-HT-2A) (SEROTONIN
22-56



RECEPTOR)


P5H7_HUMAN
5-HYDROXYTRYPTAMINE 7 RECEPTOR (5-HT-7) (5-HT-X)
72-99



(SEROTONIN RECEPTOR)


PA1AC_HUMAN
ALPHA-1-ANTICHYMOTRYPSIN PRECURSOR (ACT).
 98-132
330-357


PA1AG_HUMAN
ALPHA-1-ACID GLYCOPROTEIN 1 PRECURSOR (OROSOMUCOID)
 92-119



(OMD).


PA1AT_HUMAN
ALPHA-1-ANTITRYPSIN PRECURSOR (ALPHA-1 PROTEASE
168-202



INHIBITOR) (ALPHA-1-


PA1AU_HUMAN
ALPHA-1-ANTITRYPSIN-RELATED PROTEIN PRECURSOR.
163-197


PA2AP_HUMAN
ALPHA-2-ANTIPLASMIN PRECURSOR (ALPHA-2-PLASMIN
191-218
365-395



INHIBITOR) (ALPHA-2-


PA2GL_HUMAN
LEUCINE-RICH ALPHA-2-GLYCOPROTEIN (LRG).
104-134


PA2MG_HUMAN
ALPHA-2-MACROGLOBULIN PRECURSOR (ALPHA-2-M).
53-80
319-349
1085-1112
1402-1429


PA4_HUMAN
ALZHEIMER'S DESEASE AMYLOID A4 PROTEIN PRECURSOR
428-455



(PROTEASE NEXIN-11)


PAACT_HUMAN
ALPHA-ACTININ (F-ACTIN CROSS LINKING PROTEIN).
 92-119
720-747


PAATM_HUMAN
ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL
109-136



PRECURSOR (EC 2.6.1.1)


PABP2_HUMAN
ENDOTHELIAL ACTIN-BINDING PROTEIN (ABP-280)
61-88
119-147
2604-2633



(NONMUSCLE FILAMIN)


PAC12_HUMAN
ACTIVATOR 1 37 KD SUBUNIT (REPLICATION FACTOR C 37
306-333



KD SUBUNIT) (A1


PAC15_HUMAN
ACTIVATOR 1 140 KD SUBUNIT (REPLICATION FACTOR C
14-51
182-209
668-700



LARGE SUBUNIT) (A1


PACDL_HUMAN
ACYL-COA DEHYDROGENASE PRECURSOR, LONG-CHAIN
 78-108
179-206
313-340



SPECIFIC (EC 1.3.99.13)


PACET_HUMAN
ANGIOTENSIN-CONVERTING ENZYME PRECURSOR, TESTIS-
 78-115
126-153
676-710



SPECIFIC (EC 3.4.15.1)


PACE_HUMAN
ANGIOTENSIN-CONVERTING ENZYME PRECURSOR, SOMATIC
652-689
700-727
1250-1284



(EC 3.4.15.1) (ACE)


PACHA_HUMAN
ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN
48-80



PRECURSOR.


PACHE_HUMAN
ACETYLCHOLINE RECEPTOR PROTEIN, EPSILON CHAIN
46-98



PRECURSOR.


PACHG_HUMAN
ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN
45-79
304-331



PRECURSOR.


PACHP_HUMAN
NEURONAL ACETYLCHOLINE RECEPTOR PROTEIN, BETA-4
29-56
70-97



CHAIN (FRAGMENT)


PACRO_HUMAN
ACROSIN PRECURSOR (EC 3.4.21.10).
112-149


PACYM_HUMA
ACYLPHOSPHATASE, MUSCLE TYPE ISOZYME (EC 3.6.1.7)
26-53



(ACYLPHOSPHATE


PADT2_HUMAN
ADP,ATP CARRIER PROTEIN, FIBROBLAST ISOFORM
162-189



(ADP/ATP TRANSLOCASE 2)


PADT3_HUMAN
ADP,ATP CARRIER PROTEIN, LIVER ISOFORM T2 (ADP/ATP
163-190



TRANSLOCASE 3)


PAK79_HUMAN
A-KINASE ANCHOR PROTEIN 79 (AKAP 79) (CAMP-DEPENDENT
197-238
381-414



PROTEIN KINASE


PALFA_HUMAN
FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) A
36-63



(MUSCLE).


PALFB_HUMAN
FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) B
 79-113



(LIVER).


PAMD1_HUMAN
AMP DEAMINASE 1 (EC 3.5.4.6) (MYOADENYLATE
59-86



DEAMINASE) (AMP DEAMINASE


PAMD3_HUMAN
AMP DEAMINASE 3 (EC 3.5.4.6) (AMP DEAMINASE
49-76



ISOFORM E).


PAMPN_HUMAN
AMINOPEPTIDASE N (EC 3.4.11.2) (MICROSOMAL
492-523
604-648
926-964



AMINOPEPTIDASE) (GP150)


PAMPR_HUMAN
AMPHIREGULIN PRECURSOR (AR).
213-247


PAMRP_HUMAN
ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN
173-236
263-290



PRECURSOR


PANFB_HUMAN
BRAIN NATRIURETIC PEPTIDE PRECURSOR
36-63


PANK1_HUMAN
ANKYRIN R (ANKYRINS 2.1 AND 2.2) (ERYTHROCYTE
812-839
1004-1031
1617-1644



ANKYRIN)


PANKB_HUMAN
ANKYRIN, BRAIN VARIANT 1 (ANKYRIN B) (ANKYRIN,
1544-1571



NONERYTHROID)


PANKC_HUMAN
ANKYRIN, BRAIN VARIANT 2 (ANKYRIN B) (ANKYRIN,
1811-1838



NONERYTHROID)


PANPA_HUMAN
ATRIAL NATRIURETIC PEPTIDE RECEPTOR A PRECURSOR
553-580
825-852



(ANP-A) (ANPRA) (GC-A)


PANPB_HUMAN
ATRIAL NATRIURETIC PEPTIDE RECEPTOR B PRECURSOR
810-837



(ANP-B) (ANPRB) (GC-B)


PANT3_HUMAN
ANTITHROMBIN-III PRECURSOR (ATIII).
162-196


PANX2_HUMAN
ANNEXIN II (LIPOCORTIN II) (CALPACTIN I HEAVY
40-67
306-333



CHAIN) (CHROMOBINDIN 8)


PANX3_HUMAN
ANNEXIN III (LIPOCORTIN III) (PLACENTAL
215-242



ANTICOAGULANT PROTEIN III)


PANX6_HUMAN
ANNEXIN VI (LIPOCORTIN VI) (P68) (P70) (PROTEIN
60-87
626-653



III) (CHROMOBINDIN 20)


PANXI_HUMAN
ANNEXIN, INTESTINE-SPECIFIC (ISA).
37-78
137-164


PAOFA_HUMAN
AMINE OXIDASE (FLAVIN-CONTAINING) A (EC 1.4.3.4)
16-43
 74-104



(MONOAMINE OXIDASE)


PAOFB_HUMAN
AMINE OXIDASE (FLAVIN-CONTAINING) B (EC 1.4.3.4)
68-95



(MONOAMINE OXIDASE)


PAPA1_HUMAN
APOLIPOPROTEIN A-I PRECURSOR (APO-AI).
57-84
585-619


PAPB_HUMAN
APOLIPOPROTEIN B-100 PRECURSOR (APO B-100/APO B-48).
1073-1100
1353-1380
1524-1584
2074-2113
2132-2159
2181-2215
2240-2271
2360-2389




2466-2507
2529-2559
2850-3000
3360-3390
3480-3570
3620-3654
4040-4074
4090-4120
4135-4167




4274-4301
4397-4438
4465-4492
4499-4544


PAPC2_HUMAN
APOLIPOPROTEIN C-II PRECURSOR (APO-CII).
36-63


PAPC_HUMAN
ADENOMATOUS POLYPOSIS COLI PROTEIN (APC PROTEIN)
145-172
617-651
834-861
1795-1822
2172-2212
2572-2609


PAPE_HUMAN
APOLIPOPROTEIN E PRECURSOR (APO-E).
48-81
247-274


PAPOA_HUMAN
APOLIPOPROTEIN (A) PRECURSOR (EC 3.4.21.-)
4448-4475



(APO (A)) (LP (A))


PAQP1_HUMAN
AQUAPORIN-CHIP (WATER CHANNEL PROTEIN FOR RED BLOOD
39-73



CELLS AND KIDNEY


PARK1_HUMAN
BETA-ADRENERGIC RECEPTOR KINASE 1 (EC 2.7.1.126)
523-553



(BETA-ARK-1).


PARLY_HUMAN
ARGININOSUCCINATE LYASE (EC 4.3.2.1)
 69-103



(ARGINOSUCCINASE).


PARNT_HUMAN
ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR
223-250



(ARNT PROTEIN) (DIO


PARRC_HUMAN
BETA-ARRESTIN 2.
215-242
305-332


PARRS_HUMAN
ARRESTIN (RETINAL S-ANTIGEN) (48 KD PROTEIN) (S-AG).
299-352


PARY1_HUMAN
ARYLAMINE N-ACETYLTRANSFERASE, MONOMORPHIC
 7-34



(EC 2.3.1.5) (MNAT).


PARY2_HUMAN
ARYLAMINE N-ACETYLTRANSFERASE, POLYMORPHIC
 7-34



(EC 2.3.1.5) (PNAT).


PASNS_HUMAN
ASPARAGINE SYNTHETASE (GLUTAMINE-HYDROLYZING)
311-338
347-374



(EC 6.3.5.4) (TS11 CELL


PATCD_HUMAN
CALCIUM-TRANSPORTING ATPASE SARCOPLASMIC RETICULUM
163-190



TYPE (EC 3.6.1.38).


PATCE_HUMAN
CALCIUM-TRANSPORTING ATPASE ENDOPLASMIC RETICULUM
163-190



TYPE (EC 3.6.1.38).


PATF1_HUMAN
TRANSCRIPTION FACTOR ATF-1 (FRAGMENT)
203-230


PATF3_HUMAN
TRANSCRIPTION FACTOR ATF-3 (FRAGMENT).
155-183


PATF5_HUMAN
TRANSCRIPTION FACTOR ATF-5 (FRAGMENT)
30-61


PATF6_HUMAN
TRANSCRIPTION FACTOR ATF-6 (FRAGMENT).
34-68


PATFA_HUMAN
TRANSCRIPTION FACTOR ATF-A AND AFT-A-DELTA.
351-394


PATPF_HUMAN
ATP SYNTHASE B CHAIN, MITOCHONDRIAL PRECURSOR
129-163



(EC 3.6.1.34).


PB232_HUMAN
NUCLEOLAR PHOSPHOPROTEIN B23 (NUCLEOPHOSMIN)
114-141



(NUMATRIN).


PB2AR_HUMAN
BETA-2-ADRENERGIC RECEPTOR.
292-319
345-372


PB3A2_HUMAN
ANION EXCHANGE PROTEIN 2 (NON-ERYTHROID BAND
1081-1111



3-LIKE PROTEIN) (BND3L).


PB94_HUMAN
B94 PROTEIN.
115-142
525-562
609-636


PBAN7_HUMAN
ERYTHROCYTE BAND 7 INTEGRAL MEMBRANE PROTEIN.
106-140


PBASO_HUMAN
BASONUCLIN.
120-147
310-337
773-807


PBC2B_HUMAN
TRANSFORMING PROTEIN BCL-2-BETA.
178-205


PBCGF_HUMAN
B-CELL GROWTH FACTOR PRECURSOR (BCGF-12 KD).
33-63


PBCR_HUMAN
BREAKPOINT CLUSTER REGION PROTEIN.
784-825


PBGLR_HUMAN
BETA-GLUCURONIDASE PRECURSOR (EC 3.2.1.31).
246-280
504-531


PBMP2_HUMAN
BONE MORPHOGENETIC PROTEIN 2 PRECURSOR (BMP-2)
216-250



(BMP-2A).


PBMP5_HUMAN
BONE MORPHOGENETIC PROTEIN 5 PRECURSOR (BMP-5).
202-229


PBMP6_HUMAN
BONE MORPHOGENETIC PROTEIN 6 PRECURSOR (BMP-6).
274-301


PBMP7_HUMAN
BONE MORPHOGENETIC PROTEIN 7 PRECURSOR (BMP-7).
192-219



(OSTEOGENIC PROTEIN 1)


PBN51_HUMAN
BN51 PROTEIN.
284-311


PBPI_HUMAN
BACTERICIDAL PERMEABILITY INCREASING PROTEIN
168-195



PRECURSOR (BPI) (CAP 57).


PBRS3_HUMAN
BOMBESIN RECEPTOR SUBTYPE-3 (BRS-3).
10-37


PBTF2_HUMAN
BASIC TRANSCRIPTION FACTOR 62 KD SUBUNIT (P62).
128-162
353-385


PBTG1_HUMAN
BTG1 PROTEIN (B-CELL TRANSLOCATION GENE 1 PROTEIN).
26-53


PC1TC_HUMAN
C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC
330-363



(METHYLENETETRAHYDROFO


PC2TA_HUMAN
MHC CLASS II TRANSACTIVATOR CIITA.
921-948


PCA19_HUMAN
COLLAGEN ALPHA 1 (IX) CHAIN PRECURSOR.
120-150


PCA1B_HUMAN
COLLAGEN ALPHA 1 (XI) CHAIN PRECURSOR.
341-368


PCABV_HUMAN
CALBINDIN (VITAMIN D-DEPENDENT CALCIUM-BINDING
27-54



PROTEIN (CABP), AVIAN-


PCAD5_HUMAN
CADHERIN 5 PRECURSOR (7B4 ANTIGEN).
723-750


PCADE_HUMAN
EPITHELIAL-CADHERIN PRECURSOR (E-CADHERIN)
838-865



(UVOMORULIN) (CAM 120/80)


PCADN_HUMAN
NEURAL-CADHERIN PRECURSOR (N-CADHERIN).
 95-122
323-350


PCADP_HUMAN
PLACENTAL-CADHERIN PRECURSOR (P-CADHERIN).
384-411
580-607


PCAGA_HUMAN
CALGRANULIN A (MIGRATION INHBITORY FACTOR-RELATED
 2-29



PROTEIN 8) (MRP-8)


PCALR_HUMAN
CALCITONIN RECEPTOR PRECURSOR (CT-R).
140-167


PCAMA_HUMAN
CARTILAGE MATRIX PROTEIN PRECURSOR.
297-324
467-494


PCAP1_HUMAN
CALPAIN 1, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17)
561-588



(CALCIUM-ACTIVATED


PCAP2_HUMAN
CALPAIN 2, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17)
257-284
502-529



(CALCIUM-ACTIVATED


PCAP3_HUMAN
CALPAIN P94, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17)
674-701



(CALCIUM-


PCAPL_HUMAN
PLACENTAL CALCIUM-BINDING PROTEIN.
13-40


PCAP_HUMAN
ADENYLYL CYCLASE-ASSOCIATED PROTEIN (CAP).
111-138
163-197
321-355


PCART_HUMAN
CALRETININ (29 KD CALBINDIN)
217-244


PCASB_HUMAN
BETA CASEIN PRECURSOR.
14-48


PCATA_HUMAN
CATALASE (EC 1.11.1.6).
422-456


PCATD_HUMAN
CATHEPSIN D PRECURSOR (EC 3.4.23.5)
253-282


PCATH_HUMAN
CATHEPSIN H PRECURSOR (EC 3.4.22.16)
41-68


PCATL_HUMAN
CATHEPSIN L PRECURSOR (EC 3.4.22.15) (MAJOR
278-305



EXCRETED PROTEIN) (MEP)


PCATS_HUMAN
CATHEPSIN S PRECURSOR (EC 3.4.22.27).
30-57
142-169


PCBFB_HUMAN
CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT B (CBF-B)
24-58
138-165



(NF-Y PROTEIN


PCBG_HUMAN
CORTICOSTEROID-BINDING GLOBULIN PRECURSOR (CBG)
 88-122



(TRANSCORTIN)


PCBPB_HUMAN
CARBOXYPEPTIDASE B PRECURSOR (EC 3.4.17.2)
 69-129
278-305
319-346



(PANCREAS-SPECIFIC PROTEIN)


PCBPH_HUMAN
CARBOXYPEPTIDASE H PRECURSOR (EC 3.4.17.10)
355-382



(CARBOXYPEPTIDASE E) (CPE)


PCC21_HUMAN
CDC21 HOMOLOG (P1-CDC21) (FRAGMENT).
35-62


PCC27_HUMAN
PROTEIN CDC27HS.
209-240


PCCG1_HUMAN
TRANSCRIPTION INITIATION FACTOR TFIID 250 KD
1298-1342



SUBUNIT (TBP-ASSOCIATED


PCD14_HUMAN
MONOCYTE DIFFERENTIATION ANTIGEN CD14 PRECURSOR
142-169



(MYELOID CELL-SPECIFI


PCD1A_HUMAN
T-CELL SURFACE GLYCOPROTEIN CD1A PRECURSOR (CD1A
32-63
281-308



ANTIGEN) (T-CELL


PCD1E_HUMAN
T-CELL SURFACE CLYCOPROTEIN CD1E PRECURSOR (CD1E
 71-104



ANTIGEN) (R2G1).


PCD20_HUMAN
B-LYMPHOCYTE ANTIGEN CD20 (B-LYMPHOCYTE SURFACE
226-255



ANTIGEN B1) (LEU-16)


PCD2R_HUMAN
CD20 RECEPTOR PRECURSOR.
226-255


PCD2_HUMAN
T-CELL SURFACE ANTIGEN CD2 PRECURSOR (T-CELL SURFACE
 88-119



ANTIGEN


PCD34_HUMAN
HEMOPOIETIC PROGENITOR CELL ANTIGEN CD34 PRECURSOR
 74-108


PCD37_HUMAN
LEUKOCYTE ANTIGEN CD37.
101-128


PCD3G_HUMAN
T-CELL SURFACE GLYCOPROTEIN CD3 GAMMA CHAIN
 7-34



PRECURSOR (T-CELL RECEPT


PCD3L_HUMAN
CD30 LIGAND (CD30-L).
 96-130
183-217


PCD4X_HUMAN
CD44 ANTIGEN, EPITHELIAL FORM PRECURSOR (CD44E)
328-355



(PHAGOCYTIC


PCD4_HUMAN
T-CELL SURFACE GLYCOPROTEIN CD4 PRECURSOR (T-CELL
44-71
240-267



SURFACE ANTIGEN


PCD53_HUMAN
LEUKOCYTE SURFACE ANTIGEN CD53.
 87-114


PCD72_HUMAN
B-CELL DIFFERENTIATION ANTIGEN CD72 (LYB-2).
118-177


PCDK3_HUMAN
CELL DIVISION PROTEIN KINASE 3 (EC 2.7.1.-).
 5-32


PCDK5_HUMAN
CELL DIVISION PROTEIN KINASE 5 (EC 2.7.1.-) (KINASE
 5-32



PSSALRE).


PCEBB_HUMAN
CCAAT/ENHANCER BINDING PROTEIN BETA (C/EBP BETA)
296-330



(NUCLEAR FACTOR


PCENB_HUMAN
MAJOR CENTROMERE AUTOANTIGEN B (CENTROMERE
568-595



PROTEIN B) (CENP-B).


PCENC_HUMAN
CENTROMERE PROTEIN C (CENP-C) (CENTROMERE
433-460



AUTOANTIGEN C).


PCENE_HUMAN
CENTROMERIC PROTEIN E (CENP-E PROTEIN).
372-399
493-520
553-607
715-752
767-825
850-884
903-947
963-995
1080-1107




1122-1149
1179-1239
1250-1277
1340-1367
1440-1481
1486-1556
1646-1680
1684-1724
1808-1846




1852-1883
1890-1917
1940-1988
2021-2048
2288-2318
2440-2478
2498-2563


PCERU_HUMAN
CERULOPLASMIN PRECURSOR (EC 1.16.3.1) (FERROXIDASE).
913-940


PCETP_HUMAN
CHOLESTERYL ESTER TRANSFER PROTEIN PRECURSOR
 71-108


PCFTR_HUMAN
CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE
158-189
802-829
895-922
1243-1270



REGULATOR (CFTR).


PCGCC_HUMAN
CGMP-GATED CATION CHANNEL PROTEIN (CYCLIC NUCLEOTIDE
216-243


PCGL_HUMAN
CYSTATHIONINE GAMMA-LYASE (EC 4.4.1.1).
315-349


PCHLR_HUMAN
CHLORDECONE REDUCTASE (EC 1.1.1.225) (CDR).
17-51


PCHOL_HUMAN
CHOROIDERAEMIA-LIKE PROTEIN.
56-97
230-257
451-478


PCHOR_HUMAN
CHOROIDERAEMIA PROTEIN (TCD PROTEIN).
112-139


PCINA_HUMAN
SODIUM CHANNEL PROTEIN, CARDIAC AND SKELETAL MUSCLE
787-814
943-970



ALPHA-SUBUNIT


PCLCA_HUMAN
CLATHRIN LIGHT CHAIN A (BRAIN AND LYMPHOCYTE LCA).
121-148


PCLCB_HUMAN
CLATHRIN LIGHT CHAIN B (BRAIN AND LYMPHOCYTE LCB).
123-157


PCLCY_HUMAN
CALCYCLIN (PROLACTIN RECEPTOR ASSOCIATED PROTEIN)
 9-50



(PRA) (GROWTH


PCLUS_HUMAN
CLUSTERIN PRECURSOR (COMPLEMENT-ASSOCIATED PROTEIN
36-98
323-350
367-394



SP-40,40)


PCMGA_HUMAN
CHROMOGRANIN A PRECURSOR (CGA) (CONTAINS:
 93-120
430-457



PANCREASTATIN AND WE-14)


PCNTF_HUMAN
CILIARY NEUROTROPHIC FACTOR (CNTF).
66-93


PCO02_HUMAN
TUMOR-ASSOCIATED ANTIGEN CO-029.
29-56
 95-148


PCO3_HUMAN
COMPLEMENT C3 PRECURSOR.
242-276
593-620
837-867


PCO4_HUMAN
COMPLEMENT C4 PRECURSOR.
1292-1319


PCO5_HUMAN
COMPLEMENT C5 PRECURSOR.
298-342
537-564
970-997
1270-1304


PCO6_HUMAN
COMPLEMENT C6 PRECURSOR.
367-398


PCO7_HUMAN
COMPLEMENT C7 PRECURSOR.
225-261


PCOX1_HUMAN
CYTOCHROME C OXIDASE POLYPEPTIDE I (EC 1.9.3.1).
353-380


PCP70_HUMAN
CYTOCHROME P450 VII (CHOLESTEROL 7-ALPHA-
263-290
346-373



MONOOXYGENASE)


PCPCH_HUMAN
CYTOCHROME P450 IIC17 (EC 1.14.14.1) (P450-254C)
109-136



(FRAGMENT).


PCPE1_HUMAN
CYTOCHROME P450 IIE1 (EC 1.14.14.1) (P450-J)
231-258



(ETHANOL INDUCIBLE).


PCPSM_HUMAN
CARBAMOYL-PHOSPHATE SYNTHASE (AMMONIA)
112-146
420-447



MITOCHONDRIAL PRECURSOR


PCPT2_HUMAN
MITOCHONDRIAL CARNITINE PALMITOYLTRANSFERASE II
410-437



PRECURSOR


PCPT7_HUMAN
CYTOCHROME P450 XVIIA1 (P450-C17) (EC 1.14.99.9)
226-257



(STERIOD 17-ALPHA-


PCPV1_HUMAN
CYTOCHROME P450 XIXA1 (AROMATASE) (EC 1.14.14.1)
234-271



(ESTROGEN


PCR2_HUMAN
COMPLEMENT RECEPTOR TYPE 2 PRECURSOR (CR2)
 986-1013



(COMPLEMENT C3D RECEPTOR)


PCRCM_HUMAN
COLORECTAL MUTANT CANCER PROTEIN (MCC PROTEIN).
 68-126
379-420
633-678
724-754
763-790


PCREB_HUMAN
CAMP RESPONSE ELEMENT BINDING PROTEINS A AND B
 94-125



(CREB-A AND CREB-B).


PCREP_HUMAN
CAMP RESPONSE ELEMENT BINDING PROTEIN CRE-BP1.
380-414


PCRP_HUMAN
C-REACTIVE PROTEIN PRECURSOR.
60-87
150-177


PCS1_HUMAN
CLEAVAGE SIGNAL-1 PROTEIN (CS-1).
203-233


PCSF1_HUMAN
MICROPHAGE COLONY STIMULATING FACTOR-1 PRECURSOR
143-170



(CSF-1) (MCSF).


PCST3_HUMAN
CLEAVAGE STIMULATION FACTOR, 50 KD SUBUNIT (CSTF 50
 6-33



KD SUBUNIT) (CF-1


PCTNA_HUMAN
ALPHA-CATENIN (CADHERIN-ASSOCIATED PROTEIN).
681-718


PCTNR_HUMAN
ALPHA-CATENIN RELATED PROTEIN (CATENIN ALPHA-2).
680-717


PCX26_HUMAN
GAP JUNCTION BETA-2 PROTEIN (CONNEXIN 26) (CX26).
108-139


PCX32_HUMAN
GAP JUNCTION BETA-1 PROTEIN (CONNEXIN 32) (CX32)
117-144



(GAP JUNCTION 28 KD


PCX37_HUMAN
GAP JUNCTION ALPHA-4 PROTEIN (CONNEXIN 37) (CX37).
 88-115


PCYB5_HUMAN
CYTOCHROME B5.
 3-42


PCYG1_HUMAN
GUANYLATE CYCLASE SOLUBLE, BETA-1 CHAIN (EC 4.6.1.2)
 80-107
126-153
352-396



(70 KD CHAIN)


PCYG4_HUMAN
GUANYLATE CYCLASE SOLUBLE, ALPHA-2 CHAIN (EC 4.6.1.2).
106-133


PCYGR_HUMAN
RETINAL GUANYLYL CYCLASE PRECURSOR (EC 4.6.1.2).
824-851


PCYRG_HUMAN
CYTOKINE RECEPTOR COMMON GAMMA CHAIN PRECURSOR
293-320



(GAMMA-C)


PCYTA_HUMAN
CYSTATIN A (STEFIN A) (CYSTATIN AS).
27-58


PDBL_HUMAN
PROTO-ONCOGENE DBL PRECURSOR (CONTAINS: MCF2).
233-283
485-524
766-793
801-845


PDESM_HUMAN
DESMIN.
153-180
272-312


PDESP_HUMAN
DESMOPLAKIN I AND II (DPI AND DPII) (FRAGMENT).
31-79
113-143
217-244
269-317
382-434
437-467
528-558
563-598
630-674




697-734
738-789
1456-1493
1508-1535


PDHAP_HUMAN
ALDEHYDE DEHYDROGENASE, DIMERIC NADP-PREFERRING
31-58



(EC 1.2.1.5)


PDMD_HUMAN
DYSTROPHIN
 86-116
338-365
484-511
753-780
 976-1003
1012-1039
1201-1228
1364-1394
1615-1674




1838-1865
2158-2185
2313-2343
2752-2779
2786-2830
2912-2958
3014-3041
3499-3533


PDNJI_HUMAN
DNAJ PROTEIN HOMOLOG.
45-76


PDNLI_HUMAN
DNA LIGASE I (EC 6.5.1.1) (POLYDEOXYRIBONUCLEOTIDE
130-157
355-392
732-759



SYNTHASE (ATP)).


PDPOA_HUMAN
DNA POLYMERASE ALPHA (EC 2.7.7.7).
25-74
1009-1057
1100-1127


PDPOD_HUMAN
DNA POLYMERASE DELTA CATALYTIC CHAIN (EC 2.7.7.7)
729-756


PDPP4_HUMAN
DIPEPTIDYL PEPTIDASE IV (EC 3.4.14.5) (DPP IV)
29-77
114-148



(T-CELL ACTIVATION


PDRN1_HUMAN
DEOXYRIBONCULEASE I PRECURSOR (EC 3.1.21.1)
44-71



(DNASE I).


PDSC2_HUMAN
DESMOCOLLIN 3A/3B PRECURSOR (DESMOSOMAL
 80- 107
355-398



GLYCOPROTEIN II AND III).


PDSG1_HUMAN
DESMOGLEIN 1 PRECURSOR (DESMOSOMAL GLYCOPROTEIN 1)
15-42
271-298
497-531



(DG1).


PDSG3_HUMAN
DEXMOGLEIN 3 PRECURSOR (130 KD PEMPHIGUS VULGARIS
211-248
325-352



ANTIGEN) (PVA).


PDUG_HUMAN
DIVERGENT UPSTREAM PROTEIN (DUP)
584-618


PEAR1_HUMAN
V-ERBA RELATED PROTEIN EAR-1.
523-550


PEBI2_HUMAN
EBV-INDUCED G PROTEIN-COUPLED RECEPTOR 2 (EBI2).
44-78


PEF1B_HUMAN
ELONGATION FACTOR 1-BETA (EF-1-BETA).
105-132


PEF1D_HUMAN
ELONGATION FACTOR 1-DELTA (EF-1-DELTA).
 84-118


PEGFR_HUMAN
EPIDERMAL GROWTH FACTOR RECEPTOR PRECURSOR
64-91
440-467



(EC 2.7.1.112).


PEGF_HUMAN
EPIDERMAL GROWTH FACTOR PRECURSOR, KIDNEY (EGF)
47-74



(UROGASTRONE).


PELF1_HUMAN
ETS-RELATED TRANSCRIPTION FACTOR ELF-1.
551-588


PENPL_HUMAN
ENDOPLASMIN PRECURSOR (94 KD GLUCOSE-REGULATED
47-74
246-273



PROTEIN) (GRP94) (GP96


PENV1_HUMAN
RETORVIRUS-RELATED ENV POLYPROTEIN.
382-420


PEPC_HUMAN
IG EPSILON CHAIN C REGION.
161-188


PEPMO_HUMAN
EPIMORPHIN.
35-62
67-94
249-283


PER72_HUMAN
PROTEIN DISULFIDE ISOMERASE-RELATED PROTEIN PRECURSOR
58-85
142-169
458-485



(ERP72).


PERC1_HUMAN
DNA EXCISION REPAIR PROTEIN ERCC-1.
240-270


PERC6_HUMAN
EXCISION REPAIR PROTEIN ERCC-6
160-209
939-973


PESTR_HUMAN
ESTROGEN RECEPTOR (ER).
451-488


PET2_HUMAN
ENDOTHELIN-2 PRECURSOR (ET-2).
133-160


PET3_HUMAN
ENDOTHELIN-3 PRECURSOR (ET-3).
182-209


PEV2A_HUMAN
EVI2A PROTEIN PRECURSOR.
29-56


PEZRI_HUMAN
EZRIN (P81) (CYTOVILLIN) (VILLIN-2).
119-146
351-392
402-429
512-539


PFA5_HUMAN
COAGULATION FACTOR V PRECURSOR.
2103-2137


PFA8_HUMAN
COAGULATION FACTOR VIII PRECURSOR (PROCOAGULANT
871-908
1007-1034
1194-1230



COMPONENT).


PFA9_HUMAN
COAGULATION FACTOR IX PRECURSOR (EC 3.4.21.22)
271-298



(CHRISTMAS FACTOR).


PFABI_HUMAN
FATTY ACID-BINDING PROTEIN, INTESTINAL.
 98-125


PFASA_HUMAN
APOPTOSIS-MEDIATING SURFACE ANTIGEN FAS PRECURSOR
23-50
249-301
306-333



(APO-1 ANTIGEN).


PFCE2_HUMAN
LOW AFFINITY IMMUNOGLOBULIN EPSILON FC RECEPTOR
 81- 115



(LYMPHOCYTE IGE


PFCEA_HUMAN
HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR ALPHA-
140-174



SUBUNIT (FCERI)


PFGR2_HUMAN
FIBROBLAST GROWTH FACTOR RECEPTOR
310-337



2 PRECURSOR (EC 2.7.1.112).


PFIBA_HUMAN
FIBRINOGEN ALPHA CHAIN PRECURSOR.
131-165
427-457


PFIBB_HUMAN
FIBRINOGEN BETA CHAIN PRECURSOR.
149-186


PFIBG_HUMAN
FIBRINOGEN GAMMA-A CHAIN PRECURSOR.
59-93
125-160


PFIBH_HUMAN
FIBRINOGEN GAMMA-G CHAIN (FIBRINOGEN GAMMA′).
59-93
125-160


PFINC_HUMAN
FIBRONECTIN PRECURSOR.
2168-2199


PFLI1_HUMAN
FLI-1 ONCOGENE (ERGB TRANSCRIPTION FACTOR).
172-209


PFMO3_HUMAN
DIMETHYLANILINE MONOOXYGENASE (N-OXIDE FORMING) 3
184-218
256-283
301-328



(EC 1.14.13.8)


PFOS_HUMAN
P55-C-FOS PROTO-ONCOGENE PROTEIN.
162-193


PFRA1_HUMAN
FOS-RELATED ANTIGEN 1.
133-168


PFRA2_HUMAN
FOS-RELATED ANTIGEN 2.
149-180


PFRIH_HUMAN
FERRITIN HEAVY CHAIN.
 7-34


PFRIL_HUMAN
FERRITIN LIGHT CHAIN.
 3-33


PFSHR_HUMAN
FOLLICLE STIMULATING HORMONE RECEPTOR PRECURSOR
364-395



(FSH-R).


PFUCO_HUMAN
TISSUE ALPHA-L-FUCOSIDASE PRECURSOR (EC 3.2.1.51)
308-335



(ALPHA-L-FUCOSIDASE


PFUMH_HUMAN
FUMARATE HYDRATASE, MITOCHONDRIAL (EC 4.2.1.2)
424-451



(FUMARASE).


PG0S2_HUMAN
PUTATIVE LYMPHOCYTE G0/G1 SWITCH PROTEIN.
56-83


PG19P_HUMAN
PROTEIN KINASE C SUBSTRATE, 80 KD PROTEIN, HEAVY
146-173



CHAIN (PKCSH)


PG6PI_HUMAN
GLUCOSE-6-PHOSPHATE ISOMERASE (GPI) (EC 5.3.1.9)
16-50



(PHOSPHOGLUCOSE


PG732_HUMAN
MAJOR GASTROINTESTINAL TUMOR-ASSOCIATED PROTEIN
181-215



GA733-2 PRECURSOR


PGA12_HUMAN
GALACTOKINASE 2 (EC 2.7.1.6).
254-281


PGAA1_HUMAN
GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-1 SUBUNIT
210-237



PRECURSOR (GABA(A)


PGAA3_HUMAN
GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-3 SUBUNIT
211-255



PRECURSOR (GABA(A)


PGASR_HUMAN
GASTRIN/CHOLECYSTOKININ TYPE B RECEPTOR (CCK-B
 75-105



RECEPTOR).


PGB01_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(O), ALPHA
22-49



SUBUNIT 1.


PGB02_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(O), ALPHA
22-49



SUBUNIT 2.


PGBAK_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(K), ALPHA
22-49



SUBUNIT (G(I) ALPHA-3).


PGBAS_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S), ALPHA
 7-34



SUBUNIT (ADENYLATE


PGBAY_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(Y), ALPHA
 95-122



SUBUNIT (ALPHA-11).


PGBB3_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T)
65-92



BETA SUBUNIT 3


PGBLP_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN BETA
110-137
255-282
289-316



SUBUNIT-LIKE PROTEIN 12.3.


PGBP2_HUMAN
INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN 2
454-488



(GUANINE NUCLEOTIDE-


PGBT2_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(T), ALPHA-2
22-49



SUBUNIT (TRANSDUCIN


PGCF_HUMAN
GC-RICH SEQUENCE DNA-BINDING FACTOR (GCF)
200-227
293-320
367-394
396-423
647-674



(TRANSCRIPTION FACTOR 9)


PGCH1_HUMAN
GTP CYCLOHYDROLASE I (EC 3.5.4.16).
165-192


PGCRA_HUMAN
GLUCOCORTICOID RECEPTOR, ALPHA (GR).
167-194


PGCRB_HUMAN
GLUCOCORTICOID RECEPTOR, BETA (GR).
167-194


PGCSP_HUMAN
GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR
460-487



(EC 1.4.4.2)


PGDN_HUMAN
GLIA DERIVED NEXIN (GDN) (PROTEASE NEXIN I).
 83-110


PGELS_HUMAN
GELSOLIN PRECURSOR, PLASMA (ACTIN-DEPOLYMERIZING
701-728



FACTOR) (ADF)


PGFAP_HUMAN
GLIAL FIBRILLARY ACIDIC PROTEIN, ASTROCYTE.
189-216
349-376
384-411


PGL6S_HUMAN
N-ACETYLGLUCOSAMINE-6-SULFATASE PRECURSOR
170-221



(EC 3.1.6.14) (G6S)


PGLPK_HUMAN
GLYCEROL KINASE (EC 2.7.1.30) (APT: GLYCEROL
 78-112
251-278



3-PHOSPHOTRANSFERASE)


PGLY1_HUMAN
SERINE HYDROXYMETHYLTRANSFERASE, CYTOSOLIC
32-59
344—371



(EC 2.1.2.1) (SERINE


PGLY2_HUMAN
SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL
417-444



(EC 2.1.2.1) (SERINE


PGR78_HUMAN
78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78)
564-591
598-625



(IMMUNOGLOBULIN


PGRA2_HUMAN
GLYCINE RECEPTOR ALPHA-2 CHAIN PRECURSOR.
142-169
341-368


PGRAV_HUMAN
GRAVIN (FRAGMENT).
 9-43
61-88


PGRFR_HUMAN
GROWTH HORMONE-RELEASING HORMONE RECEPTOR
128-155



PRECURSOR (GHRH RECEPT


PGTH2_HUMAN
GLUTATHIONE S-TRANSFERASE HA SUBUNIT 2
64-91



(EC 2.5.1.18) (GTH2) (CLASS-


PGTPA_HUMAN
GTPASE-ACTIVATING PROTEIN (GAP) (RAS P21 PROTEIN
474-501
1012-1047



ACTIVATOR).


PGTR1_HUMAN
GLUCOSE TRANSPORTER TYPE 1, ERYTHROCYTE/BRAIN.
274-301


PGTR3_HUMAN
GLUCOSE TRANSPORTER TYPE 3, BRAIN.
272-299


PGTR4_HUMAN
GLUCOSE TRANSPORTER TYPE 4, INSULIN-RESPONSIVE.
290-317


PH10_HUMAN
ISTONE H1′.
44-89


PH1A_HUMAN
HISTONE H1A (H1.1).
 73-104


PH1B_HUMAN
HISTONE H1B (H1.4).
 70-101


PH1C_HUMAN
HISTONE H1C (H1.3).
 71-102


PH1D_HUMAN
HISTONE H1D (H1.2).
 70-101


PH1T_HUMAN
HISTONE H1T.
 74-105


PH2B0_HUMAN
HISTONE H2B.1.
20-47


PH2B2_HUMAN
HISTONE H2B.2.
20-47


PH2B_HUMAN
HISTONE H2B (H2B.1 A).
20-47


PHA25_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DQ(5)
142-169



ALPHA CHAIN PRECURSOR


PHB2K_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-W53
56-83



BETA CHAIN PRECURSOR


PHB2P_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP(W4)
50-77



BETA CHAIN PRECURSOR


PHB2Q_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP(W2)
50-77



BETA CHAIN PRECURSOR


PHB2S_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, SB BETA
16-43



CHAIN (FRAGMENT).


PHBG1_HUMAN
HEPARIN-BINDING GROWTH FACTOR PRECURSOR 1 (HBGF-1)
102-129



(ACIDIC FIBROBLAST


PHBG3_HUMAN
INT-2 PROTO-ONCOGENE PROTEIN PRECURSOR (HBGF-3).
61-91


PHBG6_HUMAN
FIBROBLAST GROWTH FACTOR-6 PRECURSOR (FGF-6)
41-75
159-186



(HBGF-6) (HST-2).


PHBI_HUMAN
P59 PROTEIN (HSP BINDING IMMUNOPHILIN) (HBI)
264-312



(POSSIBLE PEPTIDYL-PROLYL


PHEM4_HUMAN
UROPORPHYRINOGEN-III SYNTHASE (EC 4.2.1.75)
 74-118



(UROPORPHYRINOGEN-III


PHEP2_HUMAN
HEPARIN COFACTOR II PRECURSOR (HC-II) (PROTEASE
169-196



INHIBITOR LEUSERPIN 2)


PHEPS_HUMAN
SERIN PROTEASE HEPSIN (EC 3.4.21.-).
22-49


PHEXA_HUMAN
BETA-HEXOSAMINIDASE ALPHA CHAIN PRECURSOR
356-383



(EC 3.2.1.52) (N-ACETYL-


PHEXB_HUMAN
BETA-HEXOSAMINIDASE BETA CHAIN PRECURSOR
388-415



(EC 3.2.1.52) (N-ACETYL-BETA


PHMX1_HUMAN
HOMEOBOX PROTEIN MSX-1 (HOX-7).
178-212


PHNFA_HUMAN
HEPATOCYTE NUCLEAR FACTOR 1-ALPHA (HNF-1A) (LIVER
 2-29



SPECIFIC


PHO1_HUMAN
HEME OXYGENASE 1 (EC 1.14.99.3) (HO-1).
197-224


PHPPD_HUMAN
4-HYDROXYPHENYLPYRUVATE DIOXYGENASE (EC 1.13.11.27)
306-333



(4HPPD).


PHRX_HUMAN
ZINC FINGER PROTEIN HRX.
521-548
914-974
1637-1666
2215-2286
2289-2316
3317-3344
3448-3475


PHS1_HUMAN
HEMATOPOIETIC LINEAGE CELL SPECIFIC PROTEIN.
43-70


PHS9A_HUMAN
HEAT SHOCK PROTEIN HSP 90-ALPHA (HSP 86).
443-470
640-674


PHSER_HUMAN
HEAT-STABLE ENTEROTOXIN RECEPTOR PRECURSOR (GC-C)
511-545



(INTESTINAL


PHSF1_HUMAN
HEAT SHOCK FACTOR PROTEIN 1 (HSF 1) (HEAT SHOCK
113-140
168-209



TRANSCRIPTION FACTOR.


PHSF2_HUMAN
HEAT SHOCK FACTOR PROTEIN 2 (HSF 2) (HEAT SHOCK
117-198



TRANSCRIPTION FACTOR.


PHV2I_HUMAN
IG HEAVY CHAIN PRECURSOR V-II REGION (ARH-77).
 67-108


PHV3T_HUMAN
IG HEAVY CHAIN V-III REGION (GAL).
47-74


PHX11_HUMAN
HOMEOBOX PROTEIN HOX-II (TCL-3 PROTO-ONOGENE).
262-289


PHXB7_HUMAN
HOMEOBOX PROTEIN HOX-B7 (HOX-2C) (HHO.C1).
135-162


PIAPP_HUMAN
ISLET AMYLOID POLYPEPTIDE
53-80


PIBP3_HUMAN
INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN 3
183-210



PRECURSOR (IGFBP-3)


PIC1_HUMAN
PLASMA PROTEASE C1 INHIBITOR PRECURSOR (C1 INH).
251-278


PICA2_HUMAN
INTERCELLULAR ADHESION MOLECULE-2 PRECURSOR (ICAM-2).
57-84


PIDE_HUMAN
INSULIN-DEGRADING ENZYME (EC 3.4.99.45) (INSULINASE)
474-504
907-941



(INSULIN


PIF41_HUMAN
EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I).
232-259
322-349


PIF4B_HUMAN
INTRINSIC FACTOR PRECURSOR (IF) (GASTRIC INTRINSIC
149-176
406-433



FACTOR).


PIF_HUMAN
INHIBIN BETA A CHAIN PRECURSOR (ACTIVIN BETA-A CHAIN)
308-349



(ERYTHROID


PIHBA_HUMAN
INTERLEUKIN-1 ALPHA PRECURSOR (IL-1 ALPHA)
 80-107
183-210



(HEMATOPOIETIN-1).


PIL1A_HUMAN
INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-1R1)
 76-110
172-199



(P80).


PIL1R_HUMAN
INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-1R1)
437-467



(P80).


PIL1S_HUMAN
INTERLEUKIN-1 RECEPTOR, TYPE II PRECURSOR (IL-1R2).
159-186


PIL5R_HUMAN
INTERLEUKIN-5 RECEPTOR ALPHA CHAIN PRECURSOR
 87-114



(IL-5R-ALPHA).


PIL6_HUMAN
INTERLEUKIN-6 PRECURSOR (IL-6) (B-CELL STIMULATORY
112-139



FACTOR 2) (BSF-2)


PINAI_HUMAN
INTERFERON ALPHA-1 PRECURSOR.
 94-121


PINAR_HUMAN
INTERFERON ALPHA RECEPTOR PRECURSOR (IFN-ALPHA-REC).
 90-117
164-191
300-327
508-535


PINB_HUMAN
INTERFERON BETA PRECURSOR (FIBROBLAST).
 88-129


PINI1_HUMAN
INTERFERON-INDUCED 17 KD PROTEIN (CONTAINS:
 83-121



INTERFERON-INDUCED 15 KD


PINI6_HUMAN
INTERFERON-INDUCED 56 KD PROTEIN (IFI-56K).
51-78
216-245
393-430


PINSR_HUMAN
INSULIN RECEPTOR PRECURSOR (EC 2.7.1.112) (IR).
592-619


PINVO_HUMAN
INVOLUCRIN.
119-146
229-273
326-363
386-450


PIP3K_HUMAN
1D-MYO-INOSITOL-TRISPHOSPHATE 3-KINASE A
121-162



(EC 2.7.1.127) (INOSITOL


PIPSP_HUMAN
PLASMA SERINE PROTEASE (PROTEIN C) INHIBITOR
 90-117
206-233



PRECURSOR (PCI)


PIRBP_HUMAN
INTERPHOTORECEPTOR RETINOID-BINDING PROTEIN
670-697



PRECURSOR (IRBP)


PIRF2_HUMAN
INTERFERON REGULATORY FACTOR 2 (IRF-2).
157-193


PIT5P_HUMAN
75 KD INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE
235-262



PRECURSOR


PITA2_HUMAN
PLATELET MEMBRANE GLYCOPROTEIN IA PRECURSOR (GPIA)
579-606
900-927



(COLLAGEN RECEPTO


PITA5_HUMAN
FIBRONECTIN RECEPTOR ALPHA SUBUNIT PRECURSOR
250-284
657-695
765-792



(INTEGRIN ALPHA-F)


PITA6_HUMAN
INTEGRIN ALPHA-6 PRECURSOR (VLA-6) (INTEGRIN
884-911
944-974



ALPHA-E) (CD49F).


PITAL_HUMAN
LEUKOCYTE ADHESION GLYCOPROTEIN LFA-1 ALPHA CHAIN
256-283
310-341
795-822



PRECURSOR (LEUKOC


PITAM_HUMAN
CELL SURFACE GLYCOPROTEIN MAC-1 ALPHA SUBUNIT
1044-1078



PRECURSOR (CR-3 ALPHA


PITAV_HUMAN
VITRONECTIN RECEPTOR ALPHA SUBUNIT PRECURSOR
230-264



(INTEGRIN ALPHA-V)


PITB1_HUMAN
FIBRONECTIN RECEPTOR BETA SUBUNIT PRECURSOR
218-245
354-399



(INTEGRIN BETA-1) (CD29)


PITB2_HUMAN
CELL SURFACE ADHESION GLYCOPROTEINS LFA-1, CR3 AND
339-366
705-732



P150,95, BETA-


PITB3_HUMAN
PLATELET MEMBRANE GLYCOPROTEIN IIIA PRECURSOR
324-351



(GPIIIA) (INTEGRIN BETA-


PITB4_HUMAN
INTEGRIN BETA-4 SUBUNIT PRECURSOR (GP150).
342-369


PITB5_HUMAN
INTEGRIN BETA-5 SUBUNIT PRECURSOR.
724-751


PITB6_HUMAN
INTEGRIN BETA-6 SUBUNIT PRECURSOR.
311-338
352-393


PITB8_HUMAN
INTEGRIN BETA-8 SUBUNIT PRECURSOR.
362-399
696-737


PITI2_HUMAN
INTER-ALPHA-TRYPSIN INHIBITOR COMPLEX COMPONENT II
134-161
425-452
772-818



PRECURSOR


PK1CJ_HUMAN
KERATIN, TYPE I CYTOSKELETAL 10 (CYTOKERATIN 10).
154-187
196-227
337-399
428-462



(K10)


PK1CM_HUMAN
KERATIN, TYPE I CYTOSKELETAL 13 (CYTOKERATIN 13).
112-142



(K13)


PK1CN_HUMAN
KERATIN, TYPE I CYTOSKELETAL 14 (CYTOKERATIN 14).
122-152
306-335
393-424



(K14)


PK1CO_HUMAN
KERATIN, TYPE I CYTOSKELETAL 15 (CYTOKERATIN 15).
113-143



(K15)


PK1CP_HUMAN
KERATIN, TYPE I CYTOSKELETAL 16 (CYTOKERATIN 16).
308-339



(K16)


PK1CQ_HUMAN
KERATIN, TYPE I CYTOSKELETAL 17 (CYTOKERATIN 17).
122-152
302-346
393-431



(K17)


PK1CR_HUMAN
KERATIN, TYPE I CYTOSKELETAL 18 (CYTOKERATIN 18).
 87-114
251-298
337-385



(K18)


PK1CS_HUMAN
KERATIN, TYPE I CYTOSKELETAL 19 (CYTOKERATIN 19).
 88-118
317-362
370-397



(K19).


PK2C1_HUMAN
KERATIN, TYPE I CYTOSKELETAL 1 (CYTOKERATIN 1) (K1)
196-226
346-384
390-467



(CYTOSKELETAL 67


PK2C2_HUMAN
KERATIN, TYPE II CYTOSKELETAL 65 KD.
215-248
364-405
461-488


PK2C4_HUMAN
KERATIN, TYPE II CYTOSKELETAL 4 (CYTOKERATIN 4) (K4)
42-73
126-153
189-248



(FRAGMENT).


PK2C5_HUMAN
KERATIN, TYPE II CYTOSKELETAL 5 (CYTOKERATIN 5) (K5)
185-246
332-373



(58 KD


PK2C6_HUMAN
KERATIN, TYPE II CYTOSKELETAL 6 (CYTOKERATIN 6)
178-239
325-366
422-449



(K6B KERATIN).


PK2C8_HUMAN
KERATIN, TYPE II CYTOSKELETAL 8 (CYTOKERATIN 8) (K8)
140-167


PK2CA_HUMAN
KERATIN, TYPE II CYTOSKELETAL 56 KD (K6A KERATIN)
 7-34
120-161
217-244



(FRAGMENT).


PK6PF_HUMAN
6-PHOSPHOFRUCTOKINASE, MUSCLE TYPE (EC 2.7.1.11)
140-167



(PHOSPHOFRUCTOKINASE


PK6PL_HUMAN
6-PHOSPHOFRUCTOKINASE, LIVER TYPE (EC 2.7.1.11)
49-80
128-159



(PHOSPHOFRUCTOKINASE


PKABL_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL
498-525



(EC 2.7.1.112) (P150)


PKAC_HUMAN
IG KAPPA CHAIN C REGION.
37-85


PKALM_HUMAN
KALLMANN SYNDROME PROTEIN PRECURSOR (ADHESION
380-414



MOLECULE-LIKE X-LINK


PKAP0_HUMAN
CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA
179-206



REGULATORY CHAIN


PKAP1_HUMAN
CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA
177-204



REGULATORY CHAIN


PKAP2_HUMAN
CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA
175-202
290-317



REGULATORY CHAIN


PKBF1_HUMAN
NUCLEAR FACTOR KAPPA-B SUBUNIT-1 (NF-KAPPA-B P105
529-570



SUBUNIT)


PKCRB_HUMAN
CREATINE KINASE, B CHAIN (EC 2.7.3.2).
301-328


PKECK_HUMAN
TYROSINE PROTEIN-KINASE ECK PRECURSOR (EC 2.7.1.112)
466-493



(EPITHELIAL CELL


PKFER_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FER
219-246
564-591



(EC 2.7.1.112) (P94-FER)


PKFES_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FES/FPS
101-145
295-322



(EC 2.7.1.112) (C-FES)


PKFLT_HUMAN
RECEPTOR-RELATED TYROSINE KINASE FLT PRECURSOR
208-235
319-353



(EC 2.7.1.112).


PKFMS_HUMAN
MACROPHAGE COLONY STIMULATING FACTOR I RECEPTOR
293-320



PRECURSOR (CSF-1-R)


PKFYN_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FYN
199-233



(EC 2.7.1.112) (P59-FYN)


PKGPB_HUMAN
CGMP-DEPENDENT PROTEIN KINASE, BETA ISOZYME (CGK)
17-54



(EC 2.7.1.37).


PKHEK_HUMAN
TYROSINE KINASE HEK RECEPTOR PRECURSOR (EC 2.7.1.112)
646-673


PKINH_HUMAN
KINESIN HEAVY CHAIN.
125-155
425-452
471-542
633-680
689-716
872-899


PKKIT_HUMAN
KIT PROTO-ONCOGENE TYROSINE KINASE PRECURSOR
235-263



(EC 2.7.1.112)


PKMET_HUMAN
HEPATOCYTE GROWTH FACTOR RECEPTOR PRECURSOR
898-925



(MET PROTO-ONCOGENE


PHNH_HUMAN
KININOGEN, HMW PRECURSOR (ALPHA-2-THIOL PROTEINASE
505-532



INHIBITOR)


PKP58_HUMAN
GALACTOSYLTRANSFERASE ASSOCICATED PROTEIN KINASE
 81-108



P58/GTA (EC 2.7.1.-)


PKP68_HUMAN
INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED
149-179
191-225
285-312



PROTEIN KINASE


PKP78_HUMAN
PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78
582-609



(EC 2.7.1.-).


PKPCL_HUMAN
PROTEIN KINASE C, ETA TYPE (EC 2.7.1.-) (NPKC-ETA)
318-345



(PKC-L).


PKPT1_HUMAN
SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1-).
149-176
209-253


PKPY1_HUMAN
PYRUVATE KINASE, M1 (MUSCLE) ISOZYME (EC 2.7.1.40)
243-289



(CYTOSOLIC THYROID


PKPY2_HUMAN
PYRUVATE KINASE, M2 (ISOZYME) (EC 2.7.1.40).
243-289


PKPYR_HUMAN
PYRUVATE KINASE, ISOZYME R (EC 2.7.1.40).
 2-29


PKRET_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RET
183-217



(EC 2.7.1.112).


PKROS_HUMAN
ROS PROTO-ONCOGENE TYROSINE KINASE (EC 2.7.1.112)
157-203



(FRAGMENT).


PKSRC_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC
143-170



(EC 2.7.1.112) (P60-SRC)


PKU7_HUMAN
LUPUS KU AUTOANTIGEN PROTEIN P70 (70 KD SUBUNIT OF
235-279



KU ANTIGEN).


PKU86_HUMAN
LUPUS KU AUTOANTIGEN PROTEIN P86 (86 KD SUBUNIT OF
258-292



KU ANTIGEN).


PKYES_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE YES
209-243



(EC 2.7.1.112) (P61-YES)


PLAM1_HUMAN
LAMIN B1.
32-66
117-144
152-193
214-241
397-424
480-507
510-539


PLAMA_HUMAN
LAMIN A (70 KD LAMIN).
32-88
114-165
292-343


PLAMC_HUMAN
LAMIN C.
32-88
114-165
292-343


PLAR_HUMAN
LAR PROTEIN PRECURSOR (LEUKOCYTE ANTIGEN RELATED)
935-969



(EC 3.1.3.48).


PLA_HUMAN
LUPUS LA PROTEIN (SJOGREN SYNDROME TYPE B ANTIGEN
191-222
295-342



(SS-B))


PLCAT_HUMAN
PHOSPHATIDYLCHOLINE-STEROL ACYLTRANSFERASE
131-158



PRECURSOR (EC 2.3.1.43)


PLDHH_HUMAN
L-LACTATE DEHYDROGENASE H CHAIN (EC 1.1.1.27)
 81-108
302-329



(LDH-B).


PLDHM_HUMAN
L-LACTATE DEHYDROGENASE M CHAIN (EC 1.1.1.27)
225-252



(LDH-A).


PLDLR_HUMAN
LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR.
483-510


PLECH_HUMAN
ASIALOGLYCOPROTEIN RECEPTOR 1 (HEPATIC LECTIN H1)
62-96



(ASGPR).


PLEM3_HUMAN
P-SELECTIN PRECURSOR (GRANULE MEMBRANE PROTEIN 140)
32-59
 87-116



(GMP-140) (PADGEM)


PLGUL_HUMAN
LACTOYLGLUTATHIONE LYASE (EC 4.4.1.5)
 83-117



(METHYLGLYOXALASE)


PLIF_HUMAN
LEUKAEMIA INHIBITORY FACTOR PRECURSOR (LIF)
 95-122



(DIFFERENTIATION-


PLIN1_HUMAN
LINE-1 REVERSE TRANSCRIPTASE HOMOLOG.
152-179
232-263
298-358
671-698
874-901
1036-1066


PLIPG_HUMAN
TRIACYLGLYCEROL LIPASE PRECURSOR (EC 3.1.1.3)
158-185



(LIPASE, GASTRIC).


PLIPS_HUMAN
HORMONE SENSITIVE LIPASE (EC 3.1.1.-) (HSL).
305-332


PLKHA_HUMAN
LEUKOTRIENE A-4 HYDROLASE (EC 3.3.2.6) (LTA-4
42-83
290-324



HYDROLASE) (LEUKOTRIENE


PLMA_HUMAN
LAMININ A CHAIN PRECURSOR.
1318-1345
1741-1771
1785-1812
1824-1851
1884-1921
1965-1999
2026-2059
2091-2118


PLMB1_HUMAN
LAMININ B1 CHAIN PRECURSOR.
1267-1314
1364-1394
1597-1631
1651-1714
1722-1781


PLMB2_HUMAN
LAMININ B2 CHAIN PRECURSOR.
1103-1135
1513-1547


PLMP2_HUMAN
LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 2
155-182



PRECURSOR (LAMP-2).


PLOX2_HUMAN
ARACHIDONATE 12-LIPOXYGENASE (EC 1.13.11.31)
341-368



(12-LOX).


PLOX5_HUMAN
ARACHIDONATE 5-LIPOXYGENASE (EC 1.13.11.34)
50-87



(5-LIPOXYGENASE) (5-LO).


PLPH_HUMAN
LACTASE-PHLORIZIN HYDROLASE PRECURSOR (EC 3.2.1.108)
776-803



(EC 3.2.1.62)


PLRPB_HUMAN
PROTEIN-TYROSINE PHOSPHATASE BETA PRECURSOR
140-167
589-637



(EC 3.1.3.48) (PTP-BETA).


PLRPG_HUMAN
PROTEIN-TYROSINE PHOSPHATASE GAMMA PRECURSOR
1081-1108



(EC 3.1.3.48)


PLRPZ_HUMAN
PROTEIN-TYROSINE PHOSPHATASE ZETA PRECURSOR
553-587
1024-1051
1973-2000



(EC 3.1.3.48) (PTP-ZETA).


PLSHR_HUMAN
LUTROPIN-CHORIOGONALDOTROPIC HORMONE RECEPTOR
 66-114
448-480



PRECURSOR (LH/CG-R)


PLV2B_HUMAN
IG LAMBDA CHAIN V-II REGION (NEI).
61-88


PLYAG_HUMAN
LYSOSOMAL ALPHA-GLUCOSIDASE PRECURSOR (EC 3.2.1.20)
885-912



(ACID MALTASE).


PM2OM_HUMAN
MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER PROTEIN
50-77



(OGCP).


PMAC2_HUMAN
GALACTOSE-SPECIFIC LECTIN (MAC-2 ANTIGEN)
219-246



(IGE-BINDING PROTEIN) (35 KD


PMAN9_HUMAN
MAN(9)-ALPHA-MANNOSIDASE (EC 3.2.1.-).
414-441


PMANA_HUMAN
MANNOSE-6-PHOSPHATE ISOMERASE (EC 5.3.1.8)
60-87



(PHOSPHOMANNOSE ISOMERASE)


PMANR_HUMAN
MACROPHAGE MANNOSE RECEPTOR PRECURSOR
248-284
1147-1182


PMAP2_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN 2 (FRAGMENT).
434-478


PMAP4_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN 4.
408-449


PMAX_HUMAN
MAX PROTEIN.
117-144


PMDM2_HUMAN
MDM2 PROTEIN (P53-ASSOCIATED PROTEIN).
235-288


PMDR1_HUMAN
MULTIDRUG RESISTANCE PROTEIN 1 (P-GLYCOPROTEIN 1).
561-595


PMERL_HUMAN
MERLIN (SCHWANNOMIN).
377-407
532-566


PMERO_HUMAN
MEROSIN HEAVY CHAIN (LAMININ CHAIN A2) (FRAGMENT).
 71-105
139-173
431-458
791-818


PMGMT_HUMAN
METHYLATED-DNA-PROTEIN-CYSTEINE METHYLTRANSFERASE
 91-118



(EC 2.1.1.63) (6-O-


PMKLP_HUMAN
MITOTIC KINESIN-LIKE PROTEIN-1.
207-234
319-346
510-537
549-608


PMLCH_HUMAN
MELANIN-CONCENTRATING HORMONE PRECURSOR.
 8-35


PMLK1_HUMAN
MIXED LINEAGE KINASE 1 (EC 2.7.1.-) (FRAGMENT).
130-157
321-348


PMMSA_HUMAN
METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE
393-420


PMOES_HUMAN
MOESIN (MEMBRANE-ORGANIZING EXTENSION SPIKE PROTEIN).
119-146
351-403


PMPCP_HUMAN
MITOCHONDRIAL PHOSPHATE CARRIER PROTEIN PRECURSOR.
286-313


PMPI3_HUMAN
M-PHASE INDUCER PHOSPHATASE 3 (EC 3.1.3.48).
72-99


PMPKK_HUMAN
DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE
19-50



KINASE (EC 2.7.1.-)


PMPRI_HUMAN
CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR
1569-1596
2437-2478



PRECURSOR (CI MAN-6-


PMRP_HUMAN
MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN.
396-423
507-548


PMSHR_HUMAN
MELANOCYTE STIMULATING HORMONE RECEPTOR (MSH-R)
38-65



(MELANOTROPIN


PMSRE_HUMAN
MACROPHAGE SCAVENGER RECEPTOR TYPES I AND II
173-204
230-260



(MACROPHAGE ACETYLATED


PMTDM_HUMAN
DNA (CYTOSINE-5)-METHYLTRANSFERASE (EC 2.1.1.37)
387-414
601-628



(DNA


PMTF1_HUMAN
MITOCHONDRIAL TRNASCRIPTION FACTOR 1 PRECURSOR
181-212



(MTTF1).


PMUTA_HUMAN
METHYLMALONYL-COA MUTASE PRECURSOR (EC 5.4.99.2)
468-519



(MCM)


PMX1_HUMAN
INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN
108-150



MXA (INTERFERON-


PMX2_HUMAN
INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN
451-489
670-697



MXB (P78 RELATED


PMYBA_HUMA
MYB-RELATED PROTEIN A (FRAGMENT).
619-646


PMYBB_HUMAN
MYB-RELATED PROTEIN B.
 87-117


PMYCN_HUMA
N-MYC PROTO-ONCOGENE PROTEIN.
263-300
413-461


PMYC_HUMAN
MYC PROTO-ONCOGENE PROTEIN.
393-422


PMYF4_HUMAN
MYOGENIC FACTOR MYF-4 (MYOGENIN).
119-146


PMYF5_HUMAN
MYOGENIC FACTOR MYF-5.
121-148


PMYP2_HUMAN
MYOGENIC P2 PROTEIN.
 70-110


PMYPR_HUMAN
MYELIN PROTEOLIPID PROTEIN (PLP) (LIPOPHILIN)
43-70



(CONTAINS: MYELIN


PMYSA_HUMAN
MYOSIN HEAVY CHAIN, CARDIAC MUSCLE ALPHA ISOFORM
38-75
 84-111
137-178
236-324
398-435
440-485



(FRAGMENT).


PMYSB_HUMAN
MYOSIN HEAVY CHAIN, CARDIAC MUSCLE BETA ISOFORM.
48-75
951-981
 997-1044
1088-1122
1192-1234
1266-1332
1360-1408
1442-1479
1488-1532




1541-1582
1640-1681
1683-1710
1801-1838


PMYSE_HUMAN
MYOSIN HEAVY CHAIN, FAST SKELETAL MUSCLE, EMBRYONIC.
46-73
860-903
 952-1077
1119-1146
1193-1235
1267-1340
1364-1411
1483-1597
1641-1675




1707-1734
1827-1858


PMYSP_HUMAN
MYOSIN HEAVY CHAIN, PERINATAL CARDIAC MUSCLE
50-77
 95-125
141-188
215-272
403-483
507-552
586-624
685-736
784-818



(FRAGMENT)




823-907
946-987
1049-1076


PMYSS_HUMAN
MYOSIN HEAVY CHAIN, SKELETAL MUSCLE (FRAGMENT).
133-160
193-280
304-349
423-460
468-526
581-608
645-681
743-798
808-835





846-873


PMYT1_HUMAN
MYELIN TRANSCRIPTION FACTOR 1 (MYTI) (FRAGMENT)
640-678


PNACA_HUMAN
SODIUM/CALCIUM EXCHANGER PRECURSOR (NA+/CA2+-
492-519
594-621
705-735



EXCHANGE PROTEIN).


PNCA2_HUMAN
NEURAL CELL ADHESION MOLECULE, PHOSPHATIDYLINOSITOL-
255-282



LINKED ISOFORM


PNCF1_HUMAN
NEUTROPHIL CYTOSOL FACTOR 1 (NCF-47K) (47 KD
234-261
310-337



AUTOSOMAL CHRONIC


PNCF2_HUMAN
NEUTROPHIL NADPH OXIDASE FACTOR (P67-PHOX).
 5-32


PNEFA_HUMAN
DNA-BINDING PROTEIN NEFA PRECURSOR.
50-77
 82-112
343-395


PNEP_HUMAN
NEPRILYSIN (EC 3.4.24.11) (NEUTRAL ENDOPEPTIDASE)
170-216
644-671



(NEP)


PNF1_HUMAN
NEUROFIBROMIN (NEUROFIBROMATOSIS-RELATED PROTEIN
1145-1172
1388-1422
1639-1666



NF-1) (FRAGMENT).


PNFH_HUMAN
NEUROFILAMENT TRIPLET H PROTEIN (200 KD
 91-128
431-490



NEUROFILAMENT PROTEIN) (NF-H).


PNFL_HUMAN
NEUROFILAMENT TRIPLET L PROTEIN (68 KD NEUROFILAMENT
 92-126
441-468



PROTEIN) (NF-L).


PNFM_HUMAN
NEUROFILAMENT TRIPLET M PROTEIN (160 KD NEUROFILAMENT
101-141
164-194
215-280
315-372
737-764
794-826
872-913



PROTEIN) (NF-M).


PNK1R_HUMAN
SUBSTANCE-P RECEPTOR (SPR) (NK-1 RECEPTOR) (NK-1R).
338-365


PNK4_HUMAN
NATURAL KILLER CELLS PROTEIN 4 PRECURSOR.
166-193


PNKCR_HUMAN
NK-TUMOR RECOGNITION PROTEIN (NATURAL-KILLER CELLS
187-214
448-475
559-599
701-742
816-843
1080-1133



CYCLOPHILIN-


PNKGA_HUMAN
NKG2-A AND NKG2-B TYPE II INTEGRAL MEMBRANE
28-55



PROTEINS.


PNOS1_HUMAN
NITRIC-OXIDE SYNTHASE, BRAIN (EC 1.14.13.39) (NOS,
389-416
1116-1146
1292-1319



TYPE I).


PNOS3_HUMAN
NITRIC-OXIDE SYNTHASE, ENDOTHELIAL (EC 1.14.13.39)
389-416



(EC-NOS) (NOS,


PNTGI_HUMAN
SODIUM- AND CHLORIDE-DEPENDENT GABA TRANSPORTER 1.
131-158


PNTR_HUMAN
NEUROTENSIN RECEPTOR (NT-R).
57-84


PNTSE_HUMAN
SODIUM DEPENDENT SEROTONIN TRANSPORTER (5HT
71-98



TRANSPORTER) (5HTT)


PNTTA_HUMAN
SODIUM- AND CHLORIDE-DEPENDENT TAURINE TRANSPORTER.
120-147


PNU2M_HUMAN
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2 (EC 1.6.5.3).
202-240


PNU4M_HUMAN
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (EC 1.6.5.3).
164-191
372-399


PNUBN_HUMAN
NUCLEOBINDIN PRECURSOR.
46-73
360-387


PNUCL_HUMAN
NUCLEOLIN (PROTEIN C23).
462-508


PNY3R_HUMAN
PUTATIVE NEUROPEPTIDE Y RECEPTOR TYPE 3 (NPY3-R)
115-142



(FB22) (NPYRL)


POAT_HUMAN
ORNITHINE AMINOTRANSFERASE PRECURSOR (EC 2.6.1.13)
 98-128



(ORNITHINE-OXO-


POC3A_HUMAN
OCTAMER-BINDING TRANSCRIPTION FACTOR 3A (OCT-3A).
139-173


POC3B_HUMAN
OCTAMER-BINDING TRANSCRIPTION FACTOR 3B (OCT-3B).
37-78


POCRL_HUMAN
LOWE'S OCULOCEREBRORENAL SYNDROME PROTEIN.
704-735


PODB2_HUMAN
LIPOAMIDE ACYLTRANSFERASE COMPONENT (E2) PRECURSOR
100-127
375-402



OF BRANCHED-CHAI


PODP2_HUMAN
DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT (E2)
72-99



OF PYRUVATE


POMGP_HUMAN
OLIGODENDROCYTE-MYELIN GLYCOPROTEIN PRECURSOR
53-80



(OMG).


POPSB_HUMAN
BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR
220-247



PIGMENT).


POPSG_HUMAN
GREEN-SENSITIVE OPSIN (GREEN CONE PHOTORECEPTOR
 90-117
239-266



PIGMENT).


POPSR_HUMAN
RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT).
 90-117
239-266


POSTP_HUMAN
OSTEOPONTIN PRECURSOR (BONE SIALOPROTEIN 1)
239-266



(URINARY STONE PROTEIN)


POTC_HUMAN
ORNITHINE CARBAMOYLTRANSFERASE PERCURSOR (EC 2.1.3.3).
170-204


POTNC_HUMAN
OSTEONECTIN PRECURSOR (BASEMENT MEMBRANE PROTEIN
173-207



BM-40).


POXYB_HUMAN
OXYSTEROL-BINDING PROTEIN.
 89-123
190-217
290-317
577-604


POXYR_HUMAN
OXYTOCIN RECEPTOR (OT-R).
350-377


PP107_HUMAN
RETINOBLASTOMA-ASSOCIATED PROTEIN-LIKE 107 KD
159-186
422-449



HOMOLOG (P107)


PP1DP_HUMAN
DNA POLYMERASE ALPHA HOLOENZYME-ASSOCIATED
19-60
637-664



PROTEIN P1.


PP47_HUMAN
PLECKSTRIN (P47).
298-325


PP4HA_HUMAN
PROLYL 4-HYDROXYLASE ALPHA SUBUNIT PRECURSOR
29-69
191-218



(EC 1.14.11.2)


PP60_HUMAN
MITOCHONDRIAL MATRIX PROTEIN P1 PRECURSOR (P60
72-99
271-298
361-407



LYMPHOCYTE PROTEIN)


PP85A_HUMAN
PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA
12-39
428-476
586-613
688-715



SUBUNIT (P13-KINASE


PPAP1_HUMAN
PANCREATITIS ASSOCIATED PROTEIN 1 PRECURSOR.
 77-104


PPAX5_HUMAN
PAIRED BOX PROTEIN PAX-5 (B-CELL SPECIFIC
157-187



TRANSCRIPTION FACTOR)


PPDGA_HUMAN
PLATELET-DERIVED GROWTH FACTOR, A CHAIN PRECURSOR
38-65



(PDGF A-CHAIN)


PPEC1_HUMAN
PLATELET ENDOTHELIAL CELL ADHESION MOLECULE
685-719



PRECURSOR (PECAM-1)


PPENK_HUMAN
PROENKEPHALIN A PRECURSOR.
142-176


PPERE_HUMAN
EOSINOPHIL PEROXIDASE PRECURSOR (EC 1.11.1.7) (EPO)
308-335



(FRAGMENT)


PPERF_HUMAN
PERFORIN 1 PRECURSOR (P1) (LYMPHOCYTE PORE FORMING
411-438



PROTEIN) (PFP)


PPF4L_HUMAN
PLATELET BASIC PROTEIN PRECURSOR (PBP) (CONTAINS:
21-55



CONNECTIVE-TISSUE


PPGCA_HUMAN
CARTILAGE-SPECIFIC PROTEOGLYCAN CORE PROTEIN
 73-100



PRECURSOR (CSPCP)


PPGCS_HUMAN
LARGE FIBROBLAST PROTEOGLYCAN PRECURSOR (VERSICAN)
64-98
1390-1417
1553-1580



(CHONDROITIN


PPGDH_HUMAN
15-HYDROXYPROSTAGLANDIN DEHYDROGENASE (NAD(+))
 87-118



(EC 1.1.1.141) (PGDH)


PPGDR_HUMAN
BETA PLATELET-DERIVED GROWTH FACTOR RECEPTOR
294-321
354-384
465-495



PRECURSOR (EC 2.7.1.112).


PPGDS_HUMAN
ALPHA PLATELET-DERIVED GROWTH FACTOR RECEPTOR
64-94
347-395
461-488
524-551
 986-1058



PRECURSOR


PPGHS_HUMAN
PROSTAGLANDIN G/H SYNTHASE PRECURSOR (EC 1.14.99.1)
331-358



(CYCLOOXYGENSE)


PPGS1_HUMAN
BONE/CARTILAGE PROTEOGLYCAN I PRECURSOR (BIGLYCAN)
100-127



(PG-S1)


PPH4H_HUMAN
PHENYLALANINE-4-HYDROXYLASE (EC 1.14.16.1) (PAH)
239-266



(PHE-4-


PPHB_HUMAN
PROHIBITIN.
41-68


PPHOS_HUMAN
PHOSDUCIN (33 KD PHOTOTRANSDUCING PROTEIN) (MEKA
184-225



PROTEIN).


PPHS1_HUMAN
GLYCOGEN PHOSPHORYLASE, LIVER FORM (EC 2.4.1.1).
116-143


PPHS2_HUMAN
GLYCOGEN PHOSPHORYLASE, MUSCLE FORM (EC 2.4.1.1).
532-559


PPHS3_HUMAN
GLYCOGEN PHOSPHORYLASE, BRAIN FORM (EC 2.4.1.1).
533-560


PPIP4_HUMAN
1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE
908-935



PHOSPHODIESTERASE BETA 2


PPIP5_HUMAN
1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE
142-169
239-266



PHOSPHODIESTERASE GAMMA 2


PPLAK_HUMAN
PLAKOGLOBIN (DESMOPLAKIN III)
373-400


PPLSL_HUMAN
L-PLASTIN (FIMBRIN).
507-534


PPLST_HUMAN
T-PLASTIN (FIMBRIN).
510-561


PPM22_HUMAN
PERIPHERAL MYELIN PROTEIN 22 (PMP-22)
 3-33


PPMGB_HUMAN
PHOSPHOGLYCERATE MUTASE, BRAIN FORM (EC 5.4.2.1)
 81-111



(PGAM-B) (EC 5.4.2.4)


PPMGM_HUMA
PHOSPHOGLYCERATE MUTASE, MUSCLE FORM (EC 5.4.2.1)
 81-115



(PGAM-M)


PPML1_HUMAN
PROBABLE TRANSCRIPTION FACTOR PML-1.
551-585


PPMLX_HUMAN
PROBABLE TRANSCRIPTION FACTOR PML-X
551-585


PPMSC_HUMAN
AUTOANTIGEN PM-SCL.
103-130


PPOGA_HUMAN
DNA-BINDING PROTEIN PO-GA.
14-51
182-209
610-637
667-699


PPOL1_HUMAN
RETROVIRUS-RELATED POL POLYPROTEIN (REVERSE
774-804



TRANSCRIPTASE


PPOL2_HUMAN
RETROVIRUS-RELATED POL POLYPROTEIN (FRAGMENT).
 78-138
171-205


PPOR1_HUMAN
OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN
33-76
189-216



(VOLTAGE-DEPENDENT ANIO


PPPAP_HUMAN
PROSTATIC ACID PHOSPHATASE PRECURSOR (EC 3.1.3.2).
235-269


PPPAS_HUMAN
RED CELL ACID PHOPHATASE 1, ISOZYME S (EC 3.1.3.2)
26-53



(ACP1).


PPPOL_HUMAN
NAD(+) ADP-RIBOSYLTRANSFERASE (EC 2.4.2.30)
699-729
 972-1003



(POLY(ADP-RIBOSE)


PPRC2_HUMAN
PROTEASOME COMPONENT C2 (EC 3.4.99.46) (MACROPAIN
39-66



SUBUNIT C2)


PPRC3_HUMAN
PROTEASOME COMPONENT C3 (EC 3.4.99.46) (MACROPAIN
34-61



SUBUNIT C3)


PPRC9_HUMAN
PROTEASOME COMPONENT C9 (EC 3.4.99.46) (MACROPAIN
203-261



SUBUNIT C9)


PPRGR_HUMAN
PROGESTERONE RECEPTOR (PR) (FORMS A AND B).
846-890


PPRTS_HUMAN
VITAMIN K-DEPENDENT PROTEIN S (BLOOD CLOTTING)
337-371



PRECURSOR.


PPRTZ_HUMAN
VITAMIN K-DEPENDENT PROTEIN Z PRECURSOR.
29-56


PPSOR_HUMAN
PSORIASIN.
65-92


PPSPD_HUMAN
PULMONARY SURFACTANT-ASSOCIATED PROTEIN D PRECURSOR
224-251



(PSP-D) (SP-D).


PPTHY_HUMAN
PARATHYROID HORMONE PRECURSOR (PARATHYRIN).
 86-113


PPTN1_HUMAN
PROTEIN-TYROSINE PHOSPHATASE 1B (EC 3.1.3.48)
136-177



(PTP-1B).


PPTN2_HUMAN
T-CELL PROTEIN-TYROSINE PHOSPHATASE (EC 3.1.3.48)
59-86
138-178



(TCPTP).


PPTN6_HUMAN
PROTEIN-TYROSINE PHOSPHATASE 1C (EC 3.1.3.48)
227-261
512-580



(PTP-1C) (HEMATOPOIETIC


PPTNB_HUMAN
PROTEIN-TYROSINE PHOSPHATASE 2C (EC 3.1.3.48)
41-68
218-245



(PTP-2C) (PTP-1D)


PPTNC_HUMAN
PROTEIN-TYROSINE PHOSPHATASE G1 (EC 3.1.3.48)
618-645
695-722



(PTPG1).


PPTRR_HUMAN
PARATHYROID HORMONE/PARATHYROID HORMONE-RELATED
368-395



PEPTIDE


PPTX3_HUMAN
PENTAXIN-RELATED PROTEIN PTX3 PRECURSOR.
 74-101


PPUR2_HUMAN
PHOSPHORIBOSYLAMINE-GLYCINE LIGASE (EC 6.3.4.13)
803-830



(GARS) (GLYCINAMIDE


PPUR6_HUMAN
MULTIFUNCTIONAL PROTEIN ADE2H1
391-418



(PHOSPHORIBOSYLAMINOIMIDAZOLE-


PPUR8_HUMAN
ADENYLOSUCCINATE LYASE (EC 4.3.2.2)
204-231



(ADENYLOSUCCINASE) (ASL).


PPYR5_HUMAN
URIDINE 5′-MONOPHOSPHATE SYNTHASE (UMP
120-150



SYNTHASE) (OROTATE


PPYRG_HUMAN
CTP SYNTHASE (EC 6.3.4.2) (UTP-AMMONIA LIGASE) (CTP
 86-113
300-334



SYNTHETASE).


PPZP_HUMAN
PREGNANCY ZONE PROTEIN PRECURSOR.
315-354
 990-1024
1162-1189
1405-1432


PRA74_HUMAN
TRANSCRIPTION FACTOR IIF, ALPHA SUBUNIT (TFIIF,
474-501



ALPHA SUBUNIT)


PRAB4_HUMAN
RAS-RELATED PROTEIN RAB-4.
38-65


PRAB6_HUMAN
RAS-RELATED PROTEIN RAB-6.
123-150


PRADI_HUMAN
RADIXIN.
308-335
414-463
510-537


PRB11_HUMAN
RAS-RELATED PROTEIN RAB-11 (24KG) (YL8).
151-178


PRBB3_HUMAN
RETINOBLASTOMA BINDING PROTEIN 3 (RBBP-3)
129-156
161-223



(PRB-BINDING PROTEIN E2F-1)


PRDP_HUMAN
RD PROTEIN.
 9-53


PRENI_HUMAN
RENIN PRECURSOR, RENAL (EC 3.4.23.15)
136-163



(ANGIOTENSINOGENASE).


PREST_HUMAN
RESTIN (CYTOPLASMIC LINKER PROTEIN-170 ALPHA-2)
190-217
333-370
445-472
571-619
744-771
784-852
1023-1050
1088-1139
1157-1184



(CLIP-170).




1216-1306


PRFA1_HUMAN
REPLICATION PROTEIN A 70 KD DNA-BINDING SUBUNIT
208-235
425-455



(RP-A) (RF-A).


PRFP_HUMAN
TRANSFORMING PROTEIN (RFP) (RET FINGER PROTEIN).
183-217


PRH_HUMAN
BLOOD GROUP RH(D) POLYPEPTIDE
361-388


PRIB1_HUMAN
RIBOPHORIN I PRECURSOR.
 81-108
496-530


PRIB2_HUMAN
RIBOPHORIN II PRECURSOR.
142-172
361-388


PRIR1_HUMAN
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M1 CHAIN
42-69
370-400



(EC 1.17.4.1)


PRL22_HUMAN
60S RIBOSOMAL PROTEIN L22 (EPSTEIN-BARR VIRUS SMALL
 78-112



RNA ASSOCIATED


PRL26_HUMAN
60S RIBOSOMAL PROTEIN L26.
55-89
103-137


PRL9_HUMAN
60S ROBOSOMAL PROTEIN L9.
146-192


PRLA0_HUMAN
60S ACIDIC ROBOSOMAL PROTEIN P0 (L10E).
138-165


PRO5_HUMAN
52 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN
190-235
238-265



(SS-A)).


PRO6_HUMAN
60 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN
192-245



(SS-A)).


PROC_HUMAN
HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINS C1/C2
16-43



(HNRNP C1 AND HNRNP


PROL_HUMAN
HETEROGENEOUS RIBONUCLEOPROTEIN L (HRNPL).
501-528


PROU_HUMAN
HETEROGENEOUS RIBONUCLEOPROTEIN U.
630-657


PRPB1_HUMAN
DNA-DIRECTED RNA POLYMERASE II 215 KD POLYPEPTIDE
269-296
665-720
879-906
1314-1341
1371-1398


PRPB2_HUMAN
DNA-DIRECTED RNA POLYMERASE II 140 KD POLYPEPTIDE
626-667
1008-1035


PRPB3_HUMAN
DNA-DIRECTED RNA POLYMERASE II 33 KD POLYPEPTIDE
242-274


PRRXA_HUMAN
RETINOIC ACID RECEPTOR RXR-ALPHA.
318-352


PRRXB_HUMAN
RETINOIC ACID RECEPTOR RXR-BETA ISOFORM 1.
376-403


PRRXC_HUMAN
RETINOIC ACID RECEPTOR RXR-BETA ISOFORM 2
396-423


PRS12_HUMAN
40S RIBOSOMAL PROTEIN S12
60-87


PRS16_HUMAN
40S RIBOSOMAL PROTEIN S16
 89-116


PRS25_HUMAN
40S RIBOSOMAL PROTEIN S25.
26-53


PRS27_HUMAN
40S RIBOSOMAL PROTEIN S27A.
14-41


PRS7_HUMAN
40S RIBOSOMAL PROTEIN S7 (S8)
 73-100


PRS8_HUMAN
40S RIBOSOMAL PROTEIN S8
136-163


PRTC1_HUMAN
RAS-LIKE PROTEIN TC21.
123-150


PRU1A_HUMAN
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (U1 SNRNP A
13-47



PROTEIN)


PRU2B_HUMAN
U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B″
17-44


PRYNR_HUMAN
RYANODINE RECEPTOR, SKELETAL MUSCLE
154-188
495-522
866-893
2750-2777
2820-2847
3304-3331
3529-3556
3912-3939
4921-4948


PS10A_HUMAN
S-100 PROTEIN, ALPHA CHAIN
12-54


PS10B_HUMAN
S-100 PROTEIN, BETA CHAIN
14-56


PS10D_HUMAN
S-100D PROTEIN.
31-58


PSAHH_HUMAN
ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1) (S-ADENOSYL-L-
389-416



HOMOCYSTEINE


PSAT1_HUMAN
DNA-BINDING PROTEIN SATB1.
709-736


PSCCA_HUMAN
SQUAMOUS CELL CARCINOMA ANTIGEN (SCCA)
 78-105



(PROTEIN T4-A)


PSCF_HUMAN
STEM CELL FACTOR PRECURSOR (SCF)
 74-101


PSEM1_HUMAN
SEMENOGELIN I PROTEIN PRECURSOR (SGI) (CONTAINS:
64-98
176-226
288-329
334-368



SEMINAL BASIC


PSEM2_HUMAN
SEMENOGELIN II PRECURSOR (SGII).
71-98
183-226
304-355
405-439
539-575


PSET_HUMAN
SET PROTEIN.
38-65
154-181


PSG1_HUMAN
SECRETOGRANIN I PRECURSOR (CHROMOGRANIN B).
144-178


PSG2_HUMAN
SECRETOGRANIN II PRECURSOR (CHROMOGRANIN C).
254-281
290-317
534-561


PSIAL_HUMAN
BONE SIALOPROTEIN II PRECURSOR (BSP II).
 84-113
155-193
256-283


PSN2L_HUMAN
POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L.
231-258
545-572


PSNOB_HUMAN
SK1-RELATED ONCOGENE SNON.
414-441


PSPCA_HUMAN
SPECTRIN ALPHA CHAIN.
193-220
570-621
655-712
1099-1126
1461-1502
1882-1901
1988-2022
2120-2154
2223-2250




2346-2373


PSPCB_HUMAN
SPECTRIN BETA CHAIN, ERYTHROCYTE.
150-177
316-350
486-520
648-675
 987-1021
1027-1083
1287-1324
1347-1374
1834-1861


PSPRE_HUMAN
SEPIAPTERIN REDUCTASE (EC 1.1.1.153) (SPR).
 90-124


PSRF_HUMAN
SERUM RESPONSE FACTOR (SRF).
 77-104
480-507


PSRPR_HUMAN
SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT
 76-110



(SR-ALPHA)


PSSR1_HUMAN
SOMATOSTATIN RECEPTOR TYPE 1.
289-316


PSTHM_HUMAN
STATHMIN (PHOSPHOPROTEIN P19) (ONCOPROTEIN P18)
47-74



(LEUKEMIA-ASSOCIATED


PSUIS_HUMAN
SUCRASE-ISOMALTASE, INTESTINAL (EC 3.2.1.48)/
1748-1775



(EC 3.2.1.10).


PSYB1_HUMAN
SYNAPTOBREVIN 1.
31-67


PSYD2_HUMAN
ASPARTYL-TRNA SYNTHETASE ALPHA-2 SUBUNIT
44-71



(EC 6.1.1.12) (ASPARTATE-


PSYEP_HUMAN
MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE
174-201
740-771



(CONTAINS: GLUTAMYL-TRN


PSYH_HUMAN
HISTIDYL-TRNA SYNTHETASE (EC 6.1.1.21) (HISTIDINE-
380-442
468-502



TRNA LIGASE).


PSYT1_HUMAN
SYNAPTOTAGMIN I (P65).
140-167
250-277


PSYTC_HUMAN
THREONYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.3)
497-524
658-685



(THREONINE-TRNA


PSYV_HUMAN
VALYL-TRNA SYNTHETASE (EC 6.1.1.9) (VALINE-TRNA
230-257
413-440



LIGASE) (VALRS).


PSYW_HUMAN
TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2)
 93-127
196-223



(TRYPTOPHAN-TRNA LIGASE)


PT2EB_HUMAN
TRANSCRIPTION INITIATION FACTOR IIE-BETA CHAIN
34-68



(TFIIE-BETA).


PTAP4_HUMAN
TRANSCRIPTION FACTOR AP-4 (FRAGMENT).
169-196
245-272


PTAPB_HUMAN
TRANSCRIPTION FACTOR JUN-B
296-323


PTAPD_HUMAN
TRANSCRIPTION FACTOR JUN-D.
291-333


PTAU1_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN TAU
278-305


PTAU2_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN TAU, FETAL.
211-238


PTCO1_HUMAN
TRANSCOBALAMIN I PRECURSOR.
201-241
330-357


PTCP1_HUMAN
T-COMPLEX PROTEIN 1 (TCP-1).
316-343


PTDT_HUMAN
DNA NUCLEOTIDYLEXOTRANSFERASE (EC 2.7.7.31)
61-95



(TERMINAL ADDITION ENZYME)


PTEK_HUMAN
RECEPTOR TYROSINE-PROTEIN KINASE TEK PRECURSOR
644-678
969-996
1007-1036



(EC 2.7.1.112) (HPK-6).


PTF2B_HUMAN
TRANSCRIPTION INITIATION FACTOR 11B (FT11B).
135-162


PTFE3_HUMAN
TRANSCRIPTION FACTOR E3 (FRAGMENT).
43-70
122-149
178-226


PTFS2_HUMAN
TRANSCRIPTION ELONGATION FACTOR S-II.
29-56


PTF_HUMAN
TISSUE FACTOR PRECURSOR (TF) (COAGULATION FACTOR III).
148-175


PTGF1_HUMAN
TRANSFORMING GROWTH FACTOR BETA 1 PRECURSOR
148-185



(TGF-BETA 1).


PTGF2_HUMAN
TRANSFORMING GROWTH FACTOR BETA 2 PRECURSOR
243-270



(TGF-BETA 2) (GLIOBLASTO


PTGFA_HUMAN
TRANSFORMING GROWTH FACTOR ALPHA PRECURSOR
 87-114



(TGF-ALPHA) (EGF-LIKE TGR


PTGLK_HUMAN
PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE K
258-285



(EC 2.3.2.13)


PTHBS_HUMAN
THROMBOSPONDIN PRECURSOR.
110-165
284-314


PTHIK_HUMAN
3-KETOACYL-COA THIOLASE PEROXISOMAL PRECURSOR
185-212



(EC 2.3.1.16) (BETA-


PTKNB_HUMAN
PROTACHYKININ BETA PRECURSOR (CONTAINS:
11-38



SUBSTANCE P, NEUROKININ A


PTLE1_HUMAN
TRANSDUCIN-LIKE ENHANCER PROTEIN 1.
626-653


PTLE2_HUMAN
TRANSDUCIN-LIKE ENHANCER PROTEIN 2.
 94-125


PTLE4_HUMAN
TRANSDUCIN-LIKE ENHANCER PROTEIN 4 (FRAGMENT).
304-331


PTOPA_HUMAN
DNA TOPOISOMERASE II, ALPHA ISOZYME (EC 5.99.1.3).
19-46
503-532


PTOPB_HUMAN
DNA TOPOISOMERASE II, BETA ISOZYME (EC 5.99.1.3).
35-65
616-647


PTPM3_HUMAN
TROPOMYOSIN, FIBROBLAST ISOFORM TM3.
16-74
 82-116


PTPMA_HUMAN
TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE.
16-43
47-74
 82-116
147-174
191-237
243-277


PTPMB_HUMAN
TROPOMYOSIN BETA CHAIN, SKELETAL MUSCLE.
 37-116
193-240


PTPMC_HUMAN
TROPOMYOSIN ALPHA CHAIN, CARDIAC MUSCLE
16-74
 82-116
193-277


PTPMF_HUMAN
TROPOMYOSIN, FIBROBLAST AND EPITHELIAL MUSCLE-TYPE
 37-116
210-240
243-270



(TM36) (TME1)


PTPMG_HUMAN
TROPOMYOSIN, FIBROBLAST NON-MUSCLE TYPE (TM30PL).
46-80
111-138
158-199
207-234


PTPM1_HUMAN
TROPOMYOSIN, CYTOSKELETAL TYPE (TM30NM).
46-80
111-138
172-199


PTPMS_HUMAN
TROPOMYOSIN ALPHA CHAIN, SMOOTH MUSCLE (FRAGMENT)
25-59
147-178


PTPP2_HUMAN
TRIPEPTIDYL-PEPTIDASE II (EC 3.4.14.10) (TPP II)
153-187
1004-1031
1160-1187



(TRIPEPTIDYL


PTPR_HUMAN
TPR ONCOGENE (FRAGMENT).
 82-147


PTR36_HUMAN
TREB36 PROTEIN.
18-45
242-269


PTRFR_HUMAN
THYROTROPIN-RELEASING HORMONE RECEPTOR (TRH-R)
349-383



(THYROLIBERIN


PTRIC_HUMAN
TROPONIN I, CARDIAC MUSCLE.
36-63


PTRKA_HUMAN
HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR
66-93
117-148



PRECURSOR (EC 2.7.1.112)


PTRSR_HUMAN
TRANSFERRIN RECEPTOR PROTEIN (TR) (ANTIGEN CD71)
188-215
366-393



(T9)


PTSHR_HUMAN
THYROTROPIN RECEPTOR PRECURSOR (TSH-R).
 87-117
420-447


PTTK_HUMAN
PROTEIN KINASE TKK (EC 2.7.1.-).
170-197
324-359
510-544
549-583


PTYK2_HUMAN
NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2
150-177



(EC 2.7.1.112).


PUBA1_HUMAN
UBIQUITIN-ACTIVATING ENZYME E1 (A1S9 PROTEIN).
448-475


PUBF1_HUMAN
NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING
227-254



FACTOR 1) (UBF-1).


PUDP0_HUMAN
UDP-GLUCURONOSYLTRANSFERASE PRECURSOR MICROSOMAL
227-254



(EC 2.4.1.17)


PUFO_HUMAN
RECEPTOR TYROSINE-PROTEIN KINASE UFO PRECURSOR
488-522



(EC 2.7.1.112)


PUSF1_HUMAN
UPSTREAM STIMULATORY FACTOR 1.
251-295


PVATC_HUMAN
VACUOLAR ATP SYNTHASE SUBUNIT C (EC 3.6.1.34)
47-74
117-147



(V-ATPASE C SUBUNIT).


PVIL1_HUMAN
VILLIN.
338-372
427-461
717-744


PVIME_HUMAN
VIMENTIN.
119-146
233-260


PVINC_HUMAN
VINCULIN.
108-135


PVPRT_HUMAN
RETROVIRUS-RELATED PROTEASE (EC 3.4.23.-).
 95-134


PWEE1_HUMAN
WEE1-LIKE PROTEIN KINASE (EC 2.7.1.112).
354-388


PWT1_HUMAN
WILMS' TUMOR PROTEIN (WT33).
247-274


PXBP1_HUMAN
X BOX BINDING PROTEIN-1 (XBP-1) (TREB5 PROTEIN).
 97-135


PXPAC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-A CELLS
180-211



(XERODERMA PIGMENTOSUM


PXPCC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-C CELLS
134-168
701-728



(XERODERMA PIGMENTOSUM


PXPDC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-D CELLS
264-291



(XERODERMA PIGMENTOSUM


PXPGC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-G CELLS
 83-110
715-766
1047-1081



(XERODERMA PIGMENTOSUM


PXRCC_HUMAN
DNA-REPAIR PROTEIN XRCC1.
23-57


PZN10_HUMAN
ZINC FINGER PROTEIN 10 (ZINC FINGER PROTEIN KOX1)
29-56



(FRAGMENT).


PZN40_HUMAN
ZINC FINGER PROTEIN 40 (HUMAN IMMUNODEFICIENCY
17-62
307-334
1071-1098
1469-1500
2013-2057
2146-2180



VIRUS TYPE I ENHANCER-


PZN45_HUMAN
ZINC FINGER PROTEIN 45 (BRC1744) (FRAGMENT).
 3-30
201-228


PZN46_HUMAN
ZINC FINGER PROTEIN 46 (ZINC FINGER PROTEIN KUP)
121-149
















TABLE X







Search Results Summary for PCTLZIP, P1CTLZIP, and P2CTLZIP Motifs









PCTLZIP
P1CTLZIP
P2CTLZIP


LIBRARY FILE
LIBRARY FILE
LIBRARY FILE




















PENV_FOAMV
481-496

PENV_BIVO6
434-450



PENV_BIVO6
525-542



PENV_HV1MA
438-453

PENV_BIV27
463-479



PENV_BIV27
554-571


PENV_HV1MF
183-198

PENV_FOAMV
481-496
864-880


PENV_FENV1
30-47
630-647


PENV_HV1RH
445-460

PENV_HV1KB
752-768



PENV_FIVPE
781-798


PENV_HV1SC
186-201

PENV_HV1MA
437-453



PENV_FIVSD
779-796


PENV_HV1Z2
123-138

PENV_HV1MF
183-198



PENV_FIVT2
780-797


PENV_HV1ZH
438-453

PENV_HV1RH
444-460



PENV_FLVC6
38-55
624-641


PENV_HV2BE
750-765

PENV_HV1S1
738-754



PENV_FLVGL
605-622


PENV_HV2D1
741-756

PENV_HV1SC
186-201



PENV_FLVLB
625-642


PENV_HV2G1
741-756

PENV_HV1Z2
123-138



PENV_FLVSA
602-619


PENV_HV2NZ
742-757

PENV_HV1Z3
117-133



PENV_FOAMV
710-727
957-974


PENV_HV2RO
751-766

PENV_HV1ZH
437-453



PENV_FSVGA
625-642


PENV_HV2SB
743-758

PENV_HV2BE
750-765



PENV_FSVGB
605-622


PENV_HV2ST
745-760

PENV_HV2D1
741-756



PENV_FSVSM
608-625


PENV_JSRV
104-119

PENV_HV2G1
741-756



PENV_HV1OY
123-140


PENV_MMTVB
618-633

PENV_HV2NZ
742-757



PENV_HV1Z2
410-427


PENV_MMTVG
618-633

PENV_HV2RO
751-766



PENV_HV1Z3
154-171


PENV_SIVMK
139-154

PENV_HV2SB
743-758



PENV_HV2CA
750-767


PENV_SIVML
139-154

PENV_HV2ST
745-760



PENV_MCFF
600-617


PHEMA_CVBLY
391-406

PENV_JSRV
104-119
541-557


PENV_MCFF3
601-618


PHEMA_CVBM
391-406

PENV_MCFF
397-413



PENV_MLVAV
630-647


PHEMA_CVBQ
391-406

PENV_MCFF3
397-413



PENV_MLVCB
625-642


PHEMA_CVHOC
391-406

PENV_MLVAV
427-443



PENV_MLVF5
639-656


PHEMA_CVMA5
402-417

PENV_MLVCB
422-438



PENV_MLVFF
639-656


PHEMA_CVMS
403-418

PENV_MLVHO
423-439



PENV_MLVFP
639-656


PHEMA_INBAA
295-310

PENV_MLVMO
426-442



PENV_MLVHO
626-643


PHEMA_INBBE
303-318

PENV_MLVRD
424-440



PENV_MLVKI
167-184


PHEMA_INBBO
293-308

PENV_MLVRK
424-440



PENV_MLVMO
629-646


PHEMA_INBEN
301-316

PENV_MMTVB
618-633



PENV_MLVRD
624-641


PHEMA_INBFU
286-301

PENV_MMTVG
618-633



PENV_MLVRK
624-641


PHEMA_INBGL
296-311

PENV_SFV1
864-880



PENV_MSVFB
170-187


PHEMA_INBHK
293-308

PENV_SFV3L
861-877



PENV_RMCFV
603-620


PHEMA_INBIB
288-303

PENV_SIVGB
 93-109



PENV_SFV1
710-727
957-974


PHEMA_INBID
299-314

PENV_SIVMK
139-154
802-818


PENV_SFV3L
707-724
954-971


PHEMA_INBLE
302-317

PENV_SIVML
139-154
801-817


PENV_SIVM1
766-783


PHEMA_INBMD
292-307

PENV_SIVS4
806-822



PENV_SIVMK
765-782


PHEMA_INBME
296-311

PENV_SIVSP
810-826



PENV_SIVML
764-781


PHEMA_INBNA
288-303

PHEMA_CDVO
36-52



PENV_SIVS4
769-786


PHEMA_INBOR
301-316

PHEMA_CVBLY
391-406



PENV_SIVSP
773-790


PHEMA_INBSI
301-316

PHEMA_CVBM
391-406



PENV_SMRVH
536-553


PHEMA_INBSJ
296-313

PHEMA_CVBQ
391-406



PENV_SMSAV
42-59


PHEMA_INBUS
294-309

PHEMA_CVHOC
391-406



PHEMA_CDVO
36-53
200-217


PHEMA_INBVI
296-311

PHEMA_CVMA5
402-417



PHEMA_CVBLY
391-408


PHEMA_INBVK
303-318

PHEMA_CVMS
403-418



PHEMA_CVBM
391-408


PHEMA_INBYB
286-301

PHEMA_IAAIC
237-253



PHEMA_CVBQ
391-408


PHEMA_MUMPM
133-148

PHEMA_IABAN
221-237



PHEMA_CVHOC
391-408


PHEMA_MUMPR
133-148

PHEMA_IABUD
234-250



PHEMA_IAAIC
322-339


PHEMA_MUMPS
133-148

PHEMA_IACKA
234-250



PHEMA_IABAN
306-323


PHEMA_PI1HW
345-360

PHEMA_IACKG
231-247



PHEMA_IABUD
320-337


PHEMA_PI2H
65-80

PHEMA_IACKV
230-246



PHEMA_IACKA
320-337


PHEMA_PI2HT
65-80

PHEMA_IADA1
234-250



PHEMA_IACKG
316-333


PHEMA_RINDK
368-383

PHEMA_IADA3
237-253



PHEMA_IACKP
302-319


PHEMA_SV5
 7-94

PHEMA_IADCZ
234-250



PHEMA_IACKQ
302-319


PHEMA_SV5CM
 7-94

PHEMA_IADH1
221-237



PHEMA_IACKS
319-336


PHEMA_SV5CP
 7-94

PHEMA_IADH2
221-237



PHEMA_IACKV
315-332


PHEMA_SV5LN
 7-94

PHEMA_IADH3
221-237



PHEMA_IADA1
320-337


PVENV_DHVI1
42-57

PHEMA_IADH4
221-237



PHEMA_IADA3
322-339


PVFP7_CAPVK
 89-104

PHEMA_IADH5
221-237



PHEMA_IADCZ
320-337


PVFUS_VACC6
72-87

PHEMA_IADH6
221-237



PHEMA_IADH1
306-323


PVG01_BPP22
242-257

PHEMA_IADH7
221-237



PHEMA_IADH2
306-323


PVG01_HSVEB
169-184

PHEMA_IADM2
237-253



PHEMA_IADH3
306-323


PVG01_HSVI1
210-225
317-332
PHEMA_IADNZ
234-250



PHEMA_IADH4
306-323


PVG06_BFT4
184-199

PHEMA_IAEN6
221-237



PHEMA_IADH6
306-323


PVG07_BPT4
885-900

PHEMA_IAEN7
237-253



PHEMA_IADH7
306-323


PVG08_HSVI1
134-149

PHEMA_IAFPR
230-246



PHEMA_IADM2
322-339


PVG10_BPPH2
183-198

PHEMA_IAHAL
236-252



PHEMA_IADNZ
320-337


PVG10_BPPZA
183-198

PHEMA_IAHAR
235-251



PHEMA_IADU3
322-339


PVG10_HSVSA
109-124

PHEMA_IAHC6
230-246



PHEMA_IAEN6
306-323


PVG16_BPP1
81-96

PHEMA_IAHC7
230-246



PHEMA_IAEN7
322-339


PVG18_BPT4
468-483

PHEMA_IAHCD
230-246



PHEMA_IAFPR
315-332


PVG25_BPT4
 97-112

PHEMA_IAHDE
230-246



PHEMA_IAGRE
320-337


PVG29_HSVI1
20-35

PHEMA_IAHFO
236-252



PHEMA_IAGU2
320-337


PVG30_BPPH8
11-94

PHEMA_IAHK6
236-252



PHEMA_IAGUA
319-336


PVG36_BPOX2
22-37

PHEMA_IAHK7
236-252



PHEMA_IAHAL
321-338


PVG36_HSVSA
108-123

PHEMA_IAHLE
230-246



PHEMA_IAHC6
315-332


PVG37_BPT2
1253-1268

PHEMA_IAHLO
230-246



PHEMA_IAHC7
315-332


PVG37_HSVI1
284-299

PHEMA_IAHMI
236-252



PHEMA_IAHCD
315-332


PVG55_HSVI1
22-37
143-158
PHEMA_IAHNM
236-252



PHEMA_IAHDE
315-332


PVG56_HSVI1
268-283

PHEMA_IAHRO
236-252



PHEMA_IAHFO
321-338


PVG56_HSVI1
102-117

PHEMA_IAHSA
236-252



PHEMA_IAHK6
321-338


PVG59_HSVI1
267-282

PHEMA_IAHSP
230-246



PHEMA_IAHK7
321-338


PVG65_HSVI1
518-533

PHEMA_IAHSW
230-246



PHEMA_IAHLE
315-332


PVG9_BPPH2
234-249

PHEMA_IAHTE
236-252



PHEMA_IAHLO
315-332


PVG9_BPPZA
234-249

PHEMA_IAHTO
236-252



PHEMA_IAHMI
321-338


PVG9_BPV1R
57-72

PHEMA_IAHUR
236-252



PHEMA_IAHNM
321-338


PVGF_BPPHX
234-249

PHEMA_IAKIE
235-251



PHEMA_IAHNN
315-332


PVGL2_CVBF
264-279

PHEMA_IALEN
235-251



PHEMA_IAHPR
315-332


PVGL2_CFBL9
264-279

PHEMA_IAMAA
233-249



PHEMA_IAHRO
321-338


PVGL2_CVBLY
264-279

PHEMA_IAMAB
238-254



PHEMA_IAHSA
321-338


PVGL2_CVBM
264-279

PHEMA_IAMAO
237-253



PHEMA_IAHSP
315-332


PVGL2_CVBQ
264-279

PHEMA_IAME1
237-253



PHEMA_IAHSW
315-332


PVGL2_CVBV
264-279

PHEMA_IAME2
237-253



PHEMA_IAHTE
321-338


PVGL2_CVPFS
442-457

PHEMA_IAME6
221-237



PHEMA_IAHTO
321-338


PVGL2_CVPPU
440-455
504-519
PHEMA_IAMIN
 85-101
231-247


PHEMA_IAHUR
321-338


PVGL2_CVPR8
218-233

PHEMA_IANT6
237-253



PHEMA_IAJAP
317-334


PVGL2_CVPRM
218-233

PHEMA_IAQU7
221-237



PHEMA_IAMAA
319-336


PVGL2_IBV6
1056-1071

PHEMA_IARUD
234-250



PHEMA_IAMAB
324-341


PVGL2_IBVB
1055-1070

PHEMA_IASE2
234-250



PHEMA_IAMAO
322-339


PVGL2_IBVD2
1056-1071

PHEMA_IASH2
234-250



PHEMA_IAME1
322-339


PVGL2_IBVK
1055-1070

PHEMA_IASTA
230-246



PHEMA_IAME2
322-339


PVGL2_IBVM
1055-1070

PHEMA_IATAI
235-251



PHEMA_IAME6
306-323


PVGLB_HSVSA
701-716

PHEMA_IATKM
234-250



PHEMA_IAMIN
316-333


PVGLB_PRVIF
203-216

PHEMA_IATKO
233-249



PHEMA_IANT6
322-339


PVGLC_HSVBC
475-490

PHEMA_IATKR
230-246



PHEMA_IAPIL
320-337


PVGLC_HSVE4
444-459

PHEMA_IATKW
229-245



PHEMA_IAQU7
306-323


PVGLC_HSVEB
427-442

PHEMA_IAUDO
237-253



PHEMA_IARUD
320-337


PVGLC_PRVIF
446-461

PHEMA_IAUSS
235-251



PHEMA_IASE2
320-337


PVGLD_HSV11
79-94

PHEMA_IAVI7
238-254



PHEMA_IASH2
321-338


PVGLD_HSV2
79-94

PHEMA_IAXIA
235-251



PHEMA_IASTA
315-332


PVGLF_BRSVA
265-280

PHEMA_IAZCO
237-253



PHEMA_IATKM
320-337


PVGLF_BRSVC
265-280

PHEMA_IAZH2
221-237



PHEMA_IAUDO
322-339
380-397


PVGLF_BRSVR
265-280

PHEMA_IAZH3
221-237



PHEMA_IAVI7
323-340


PVGLF_HRSV1
265-280

PHEMA_IAZUK
237-253



PHEMA_IAZCO
322-339


PVGLF_HRSVA
265-280

PHEMA_INBAA
115-131
295-310


PHEMA_IAZH2
306-323


PVGLF_HRSVL
265-280

PHEMA_INBBE
123-139
303-318


PHEMA_IAZH3
306-323


PVGLF_HRSVR
265-280

PHEMA_INBBO
116-132
293-308


PHEMA_IAZUK
322-339


PVGLF_MUMPS
 5-94

PHEMA_INBEN
123-139
301-316


PHEMA_MUMPM
101-118


PVGLI_VZVD
278-293

PHEMA_INBFU
108-124
286-301


PHEMA_MUMPR
101-118


PVGLM_HANTB
900-915

PHEMA_INBGL
119-135
296-311


PHEMA_MPMPS
101-118


PVGLM_PTPV
743-758

PHEMA_INBHK
116-132
293-308


PHEMA_NDVA
 93-110


PVGLM_SEOUR
901-916

PHEMA_INBIB
108-124
288-303


PHEMA_NDVB
 93-110


PVGLM_SEOUS
900-915

PHEMA_INBID
120-136
299-314


PHEMA_NDVD
 93-110


PVGLY_LASSG
426-441

PHEMA_INBLE
123-139
302-317


PHEMA_NDVH
 93-110


PVGLY_LASSJ
427-442

PHEMA_INBMD
113-129
292-307


PHEMA_NDVI
 93-110


PVGLY_MOPEI
425-440

PHEMA_INBME
116-132
296-311


PHEMA_NDVM
 93-110


PVM3_REOVD
521-536

PHEMA_INBNA
108-124
288-303


PHEMA_NDVQ
 93-110


PVMSA_HPBGS
380-395

PHEMA_INBOR
123-139
301-316


PHEMA_NDVTG
 93-110


PVMSA_HPBV9
187-202

PHEMA_INBSI
123-139
301-316


PHEMA_NDVU
 93-110


PVMSA_WHV1
378-393

PHEMA_INBSJ
119-135
298-313


PHEMA_PHODV
36-53


PVMSA_WHV59
383-398

PHEMA_INBUS
116-132
294-309


PHEMA_PI1HW
486-503


PVMSA_WHV7
383-398

PHEMA_INBVI
116-132
296-311


PHEMA_PI3B
111-128


PVMSA_WHV8
383-398

PHEMA_INBVK
123-139
303-318


PHEMA_PI3H4
111-128


PVMSA_WHV8I
383-398

PHEMA_INBYB
108-124
286-301


PHEMA_PI3HA
111-128


PVMSA_WHVW6
234-249

PHEMA_MUMPM
133-148



PHEMA_PI3HT
111-128


PVMT2_IAANN
25-40

PHEMA_MUMPR
133-148



PHEMA_PI3HU
111-128


PVMT2_IABAN
25-40

PHEMA_MUMPS
133-148



PHEMA_PI3HV
111-128


PVMT2_IAFOW
25-40

PHEMA_PI1HW
345-360



PHEMA_PI3HW
111-128


PVMT2_IAFPR
25-40

PHEMA_PI2H
65-81



PHEMA_PI3HX
111-128


PVMT2_IAFPW
25-40

PHEMA_PI2HT
65-81



PHEMA_PI4HA
50-67


PVMT2_IALE1
25-40

PHEMA_PI3B
324-340



PHEMA_SV41
 85-102


PVMT2_IALE2
25-40

PHEMA_PI3H4
324-340



PHEMA_SV5
 84-101


PVMT2_IAMAN
25-40

PHEMA_PI3HA
324-340



PHEMA_SV5CM
 84-101


PVMT2_IAPUE
25-40

PHEMA_PI3HT
324-340



PHEMA_SV5CP
 84-101


PVMT2_IASIN
25-40

PHEMA_PI3HU
324-340



PHEMA_SV5LN
 84-101


PVMT2_IAUDO
25-40

PHEMA_PI3HV
324-340



PVFO5_VACCC
280-297


PVMT2_IAWIL
25-40

PHEMA_PI3HW
324-340



PVFO5_VACCP
280-297


PVMT9_MYXVL
226-241

PHEMA_PI3HX
324-340



PVFO5_VACCV
281-298





PHEMA_RINDK
368-383



PVFO9_VACCC
176-193





PHEMA_SV5
 7-94



PVFO9_VACCV
176-193





PHEMA_SV5CM
 7-94



PVG27_HSVSA
209-226





PHEMA_SV5CP
 7-94



PVG28_HSVI1
173-190





PHEMA_SV5LN
 7-94



PVG39_HSVI1
648-665





PVENV_DHVI1
42-57



PVG43_HSVI1
109-126
521-538





PVENV_EAV
25-41



PVG67_HSVI1
171-188





PVFP2_FOWPV
 88-104



PVG72_HSVI1
1252-1269





PVFP7_CAPVK
 89-104



PVGF1_IBVB
3073-3090





PVFUS_VACC6
72-87



PVGL2_IBV6
1094-1111





PVG01_HSVEB
169-184



PVGLB_HSVE1
736-753





PVG01_HSVI1
209-225
317-332


PVGLB_HSVE4
675-692





PVG08_HSVI1
134-149



PVGLB_HSVEA
736-753





PVG10_HSVSA
109-124



PVGLB_HSVEB
736-753





PVG11_HSVI1
103-119



PVGLB_HSVEL
736-753





PVG12_HSVI1
270-286



PVGLB_ILTV6
597-614





PVG1_SPV1R
76-92



PVGLB_ILTV5
607-624





PVG29_HSVI1
20-35



PVGLB_ILTVT
607-624





PVG86_BPOX2
22-37



PVGLC_PRVIF
180-197





PVG36_HSVSA
108-123



PVGLE_VZVD
469-486





PVG37_HSVI1
284-299



PVGLF_SV5
401-418





PVG41_HSVI1
244-260



PVGLH_HCMVA
365-382





PVG46_HSVI1
1244-1260



PVGLH_HCMVT
364-381





PVG55_HSVI1
22-37
143-158


PVGLH_HSV11
245-262
803-820





PVG56_HSVI1
268-283



PVGLH_HSV1E
245-262
803-820





PVG58_HSVI1
101-117



PVGLI_HSV11
43-60





PVG58_HSVSA
130-146
330-346


PVGLM_BUNL7
81-98





PVG59_HSVI1
267-282



PVGLM_BUNSH
81-98





PVG65_HSVI1
362-378
518-533


PVGLM_PUUMH
712-729





PVG71_HSVSA
 89-105



PVGLM_PUUMS
712-729





PVG9_BPPH2
234-249



PVGLM_RVFV
344-361





PVG9_BPPZA
234-249



PVGLM_RVFVZ
344-361





PVG9_SPV1R
57-72



PVGLY_LASSG
12-94





PVGF1_IBVB
2210-2226



PVGLY_LASSJ
12-94





PVGL2_CVBF
123-139
174-190
264-279

PVGLY_LYCVA
12-94





PVGL2_CVBL9
123-139
174-190
264-279

PVGLY_LYCVW
12-94





PVGL2_CVBLY
123-139
174-190
264-279

PVGLY_MOPEI
12-94





PVGL2_CVBM
123-139
174-190
264-279

PVM1_REOVD
280-297





PVGL2_CVBQ
31-47
123-139
174-190
264-279
PVM1_REOVL
280-297





PVGL2_CVBV
123-139
174-190
264-279

PVMAT_CDVO
148-165





PVGL2_CVM4
 95-111
1267-1283


PVMAT_MEASI
 87-104





PVGL2_CVMA5
 95-111
1216-1231


PVMP_CAMVC
147-164





PVGL2_CVMJH
 95-111
1126-1142


PVMP_CAMVD
147-164





PVGL2_CVPFS
442-457
800-818
1274-1290

PVMP_CAMVE
147-164





PVGL2_CVPPU
440-455
504-519
798-814
1272-1288
PVMP_CAMVN
147-164





PVGL2_CVPR8
218-233
576-592
1050-1066

PVMP_CAMVS
147-164





PVGL2_CVPRM
218-233
576-592
1050-1066

PVMP_CAMVW
147-164





PVGL2_FIPV
803-819
1277-1293


PVMSA_HPBVO
11-94





PVGL2_IBV6
1056-1071



PVMSA_HPBV2
185-202





PVGL2_IBVB
1055-1070



PVMSA_HPBV4
185-202





PVGL2_IBVD2
1056-1071



PVMSA_HPBVA
174-191





PVGL2_IBVK
1055-1070



PVMSA_HPBVD
11-94





PVGL2_IBVM
1055-1070



PVMSA_HPBVJ
174-191





PVGLB_HSVSA
701-716



PVMSA_HPBVL
174-191





PVGLB_PRVIF
203-218



PVMSA_HPBVN
11-94





PVGLB_VZVD
522-538



PVMSA_HPBVO
174-191





PVGLC_HSVBC
475-490



PVMSA_HPBVP
185-202





PVGLC_HSVE4
444-459



PVMSA_HPBVR
185-202





PVGLC_HSVEB
427-442



PVMSA_HPBVS
11-94





PVGLC_PRVIF
446-461



PVMSA_HPBVW
174-191





PVGLC_VZVD
150-166



PVMSA_HPBVY
174-191





PVGLC_VZVS
150-166



PVMSA_HPBVZ
174-191





PVGLD_HSV11
79-94



PVMT2_IAANN
25-42





PVGLD_HSV2
79-94



PVMT2_IABAN
25-42





PVGLE_PRVRI
 3-94



PVMT2_IAFOW
25-42





PVGLF_BRSVA
205-221
265-280


PVMT2_IAFPR
25-42





PVGLF_BRSVC
205-221
265-280


PVMT2_IAFPW
25-42





PVGLF_BRSVR
205-221
265-280


PVMT2_IALE1
25-42





PVGLF_COVO
398-414



PVMT2_IALE2
25-42





PVGLF_HRSV1
205-221
265-280


PVMT2_IAMAN
25-42





PVGLF_HRSVA
205-221
265-280


PVMT2_IAPUE
25-42





PVGLF_HRSVL
205-221
265-280


PVMT2_IASIN
25-42





PVGLF_HRSVR
205-221
265-280


PVMT2_IAUDO
25-42





PVGLF_MEASE
286-302



PVMT2_IAWIL
25-42





PVGLF_MEASI
289-305





PVGLF_MEASY
286-302





PVGLF_MUMPM
276-292





PVGLF_MUMPR
276-292





PVGLF_MUMPS
 5-94
276-292





PVGLF_NDVA
273-289





PVGLF_NDVB
273-289





PVGLF_NDVM
273-289





PVGLF_NDVT
273-289





PVGLF_NDVTG
273-289





PVGLF_NDVU
273-289





PVGLF_PHODV
269-285
367-383





PVGLF_RINDK
282-298





PVGLF_RINDL
282-298





PVGLF_TRTV
175-191





PVGLI_VZVD
278-293





PVGLM_HANTB
355-371
900-915





PVGLM_HANTH
499-515





PVGLM_HANTL
499-515





PVGLM_HANTV
499-515





PVGLM_PTPV
743-758





PVGLM_PUUMH
509-525





PVGLM_PUUMS
509-525





PVGLM_SEOUR
355-371
901-916





PVGLM_SEOUS
355-371
900-915





PVGLM_UUK
826-842





PVGLP_BEV
869-885





PVGLY_LASSG
12-94
426-441





PVGLY_LASSJ
12-94
427-442





PVGLY_LYCVA
12-94





PVGLY_LYCVW
12-94





PVGLY_MOPEI
12-94
425-440





PVGLY_PIARV
12-94





PVGNM_CPMV
1021-1037





PVM3_REOVD
521-536





PVMAT_MUMPS
191-207





PVMAT_NDVA
135-151





PVMAT_NDVB
135-151





PVMAT_PI2HT
189-205





PVMAT_SV41
189-205





PVMAT_SV5
 98-114
132-148





PVMP_CAMVC
118-134





PVMP_CAMVD
118-134





PVMP_CAMVE
118-134





PVMP_CAMVN
118-134





PVMP_CAMVS
118-134





PVMP_CAMVW
118-134





PVMP_FMVD
115-131





PVMSA_HPBGS
380-395





PVMSA_HPBV9
187-202





PVMSA_WHV1
378-393





PVMSA_WHV59
383-398





PVMSA_WHV7
383-398





PVMSA_WHV8
383-398





PVMSA_WHV8I
383-398





PVMSA_WHVW6
234-249





PVMT2_IAANN
25-40





PVMT2_IABAN
25-40





PVMT2_IAFOW
25-40





PVMT2_IAFPR
25-40





PVMT2_IAFPW
25-40





PVMT2_IALE1
25-40





PVMT2_IALE2
25-40





PVMT2_IAMAN
25-40





PVMT2_IAPUE
25-40





PVMT2_IASIN
25-40





PVMT2_IAUDO
25-40





PVMT2_IAWIL
25-40





PVMT9_MYXVL
226-241
















TABLE XI







Search Results Summary for P3CTLZIP, P4CTLZIP, P5CTLZIP, and P6CTLZIP Motifs










P3CTLZIP
P4CTLZIP
P5CTLZIP
P6CTLZIP


LIBRARY FILE
LIBRARY FILE
LIBRARY FILE
LIBRARY FILE






















PENV_BIV27
147-165

PENV1_FRSFV
380-399

PENV1_FRSFV
380-400

PENV_BIVO6
47-68
525-546



PENV_CAEVC
810-828

PENV_AVISU
 98-117

PENV2_FRSFV
380-400

PENV_BIV27
47-68
147-168
564-575


PENV_CAEVG
808-826

PENV_BIV27
147-166

PENV_BAEVM
170-190

PENV_FENV1
225-246
630-651


PENV_HV2BE
750-768

PENV_HV1ZH
123-142

PENV_FIVPE
781-801

PENV_FLVC6
624-645


PENV_HV2D1
741-759

PENV_HV2D2
 9-29

PENV_FIVSD
779-799

PENV_FLVGL
447-468
605-626


PENV_HV2G1
741-759

PENV_HV2SB
778-797

PENV_FIVT2
780-800

PENV_FLVLB
467-488
625-646


PENV_HV2NZ
742-760

PENV_JSRV
541-560

PENV_FLVGL
 9-29

PENV_FLVSA
444-465
602-623


PENV_HV2RO
751-769

PENV_RSVP
533-552

PENV_FOAMV
255-275
924-944
PENV_FOAMV
153-174
957-978


PENV_HV2SB
743-761

PHEMA_VACCC
173-192

PENV_FSVGA
 9-29

PENV_FSVGA
467-488
625-646


PENV_HV2ST
745-763

PHEMA_VACCI
173-192

PENV_HV1C4
428-448

PENV_FSVGB
447-468
605-626


PENV_JSRV
376-394

PHEMA_VACCT
173-192

PENV_HV2CA
750-770

PENV_FSVSM
450-471
608-629


PHEMA_PI2H
118-136

PHEMA_VACCV
173-192

PENV_MLVF5
400-420

PENV_FSVST
467-488


PHEMA_PI2HT
118-136

PVENV_BEV
62-81

PENV_MMTVB
643-663

PENV_GALV
52-73
519-540


PHEMA_SV41
55-73

PVENV_MCV1
61-80

PENV_MMTVG
643-663

PENV_HV2BE
750-771


PVENV_THOGV
473-491

PVENV_MCV2
61-80

PENV_OMVVS
75-95

PENV_HV2G1
741-762


PVG16_BPP22
 83-101

PVFUS_ORFNZ
29-48

PENV_RSVP
42-62

PENV_HV2NZ
742-763


PVG24_BPT4
115-133

PVGO1_HSVEB
169-188

PENV_SFV1
924-944

PENV_HV2RO
751-772


PVG36_HSVSA
344-362

PVGO1_VACCC
376-395

PENV_SFV3L
921-941

PENV_HV2ST
745-766


PVG40_HSVI1
14-32

PVGO1_VACCV
315-334

PENV_SIVM1
766-786

PENV_MCFF
600-621


PVG50_HSVSA
 5-94

PVGO1_VARV
376-395

PENV_SIVMK
765-785

PENV_MCFF3
601-622


PVG51_BPT4
63-81

PVGO6_BPT4
627-646

PENV_SIVML
764-784

PENV_MLVAV
630-651


PVG51_HSVI1
 84-102

PVG10_HSVI1
35-54

PENV_SIVS4
769-789

PENV_MLVCB
625-646


PVG65_HSVI1
155-173

PVG11_HSVI1
103-122
150-169
PENV_SIVSP
773-793

PENV_MLVF5
639-660


PVGF1_IBVB
2788-2806
3374-3392
PVG1_BPPH2
31-50

PHEMA_CDVO
493-513

PENV_MLVFF
639-660


PVGL2_CVH22
1053-1071

PVG1_SPV1R
659-678

PHEMA_CVBLY
391-411

PENV_MLVFP
639-660


PVGL2_IBV6
1056-1074

PVG20_BPT4
231-250

PHEMA_CVBM
391-411

PENV_MLVHO
626-647


PVGL2_IBVB
1055-1073

PVG32_VZVD
 90-109

PHEMA_CVBQ
391-411

PENV_MLVKI
167-188


PVGL2_IBVD2
1056-1074

PVG36_BPK3
132-151

PHEMA_CVHOC
391-411

PENV_MLVMO
629-650


PVGL2_IBVK
1055-1073

PVG37_BPT2
19-38
629-648
PHEMA_CVMA5
402-422

PENV_MLVRD
624-645


PVGL2_IBVM
1055-1073

PVG37_BPT4
19-38
625-644
PHEMA_IACKG
 81-101

PENV_MLVRK
624-645


PVGLB_HSVB1
560-578
689-707
PVG39_HSVI1
1038-1057

PHEMA_IADMA
 81-101

PENV_MSVFB
170-191


PVGLB_HSVBC
692-710

PVG41_HSVI1
62-81

PHEMA_MUMPM
397-417

PENV_RMCFV
603-624


PVGLB_HSVSA
584-602

PVG43_BPPF3
380-399

PHEMA_MUMPR
397-417

PENV_SFV1
957-978


PVGLB_ILTV6
740-758

PVG46_BPPF1
337-356

PHEMA_MUMPS
397-417

PENV_SFV3L
157-178
954-975


PVGLB_ILTVS
750-768

PVG59_HSVI1
142-161

PHEMA_PHODV
493-513

PENV_SIVA1
437-458


PVGLB_ILTVT
750-768

PVG61_HSVI1
117-136

PHEMA_PI1HW
322-342

PENV_SIVAG
442-463


PVGLC_VZVD
431-449

PVG67_HSVI1
318-337
1072-1091
PHEMA_PI2H
13-33

PENV_SIVAI
421-442


PVGLC_VZVS
431-449

PVGF1_IBVB
1587-1606
2108-2127
PHEMA_PI2HT
13-33

PENV_SIVAT
435-456


PVGLF_PI3H4
 2-94

PVGL2_CVBF
 991-1010

PHEMA_RINDL
497-517

PENV_SMSAV
42-63


PVGLH_HSV6G
314-332

PVGL2_CVBL9
 991-1010

PHEMA_SEND5
322-342

PHEMA_CVMA5
402-423


PVGLH_HSVE4
814-832

PVGL2_CVBLY
 991-1010

PHEMA_SENDF
322-342

PHEMA_IADE1
266-287


PVGLH_HSVEB
807-825

PVGL2_CVBM
 991-1010

PHEMA_SENDH
322-342

PHEMA_MUMPM
225-246


PVGLI_HSV11
 5-94

PVGL2_CVBQ
 991-1010

PHEMA_SENDJ
322-342

PHEMA_MUMPR
225-246


PVGNM_BPMV
678-696

PVGL2_CVBV
 991-1010

PHEMA_SENDZ
322-342

PHEMA_MUMPS
225-246


PVMO1_VACCC
134-152
177-195
PVGL2_CVH22
768-787
1115-1134
PVENV_LELV
27-47
148-168
PHEMA_PHODV
213-234


PVMO1_VACCV
 83-101
126-144
PVGL2_CVM4
 999-1018

PVENV_THOGV
356-376

PHEMA_PI2H
13-34


PVM1_REOVD
227-245

PVGL2_CVMA5
947-966

PVGO1_VACCC
298-318

PHEMA_PI2HT
13-34


PVM1_REOVL
227-245

PVGL2_CVMJH
858-877

PVGO1_VACCV
237-257

PHEMA_SV5
7-28
379-400


PVMAT_HRSVA
44-62

PVGL2_CVPFS
64-83
1038-1057
PVGO1_VARV
298-318

PHEMA_SV5CM
 7-28
379-400


PVMAT_NDVA
190-208

PVGL2_CVPPU
64-83
1036-1055
PVGO6_VACCC
31-51

PHEMA_SV5CP
 7-28
379-400


PVMAT_NDVB
190-208

PVGL2_CVPR8
814-833

PVGO6_VARV
31-51

PHEMA_SV5LN
7-28
379-400


PVMP_CAMVC
183-201

PVGL2_CVPRM
814-833

PVGO9_BPPF1
25-45

PVGO1_HSVEB
169-190


PVMP_CAMVD
183-201

PVGL2_FIPV
1041-1060

PVG12_HSVI1
151-171

PVGO1_HSVI1
589-610


PVMP_CAMVE
183-201

PVGL2_IBV6
588-607
771-790
PVG22_HSVI1
300-320

PVG23_HSVI1
314-335


PVMP_CAMVN
183-201

PVGL2_IBVB
587-606
770-789
PVG39_HSVI1
648-668
970-990
PVG37_BPOX2
65-86


PVMP_CAMVS
183-201

PVGL2_IBVD2
588-607
771-790
PVG51_HSVI1
29-49

PVG43_HSVI1
157-178


PVMP_CAMVW
183-201

PVGL2_IBVK
587-606
770-789
PVG63_HSVI1
336-356

PVG55_HSVI1
288-309


PVMP_FMVD
180-198

PVGL2_IBVM
587-606
770-789
PVG65_HSVI1
117-137

PVG55_HSVSA
 85-106





PVGLB_HCMVA
706-725

PVG74_HSVSA
124-144

PVG56_HSVI1
1155-1176





PVGLB_HCMVT
707-726

PVGL2_IBV6
328-348

PVG58_HSVSA
266-287





PVGLB_HSV6U
117-136

PVGL2_IBVB
327-347

PVG60_HSVI1
30-51





PVGLB_ILTV6
256-275

PVGL2_IBVD2
328-348

PVG83_HSVI1
238-259





PVGLB_ILTVS
266-285

PVGL2_IBVD3
328-348

PVGF1_IBVB
1856-1877





PVGLB_ILTVT
266-285

PVGL2_IBVK
327-347

PVGH3_HCMVA
157-178





PVGLC_HSV11
 3-94
467-486
PVGL2_IBVM
327-347
378-398
PVGL2_CVBF
1259-1280





PVGLC_HSV1K
 3-94
467-486
PVGL2_IBVU2
310-330

PVGL2_CVBL9
1259-1280





PVGLC_HSVBC
475-494

PVGLB_EBV
732-752

PVGL2_CVBLY
1259-1280





PVGLG_CHAV
436-455

PVGLB_HCMVA
750-770

PVGL2_CVBM
1259-1280





PVGLG_RABVH
372-391

PVGLB_HCMVT
751-771

PVGL2_CVBQ
1259-1280





PVGLI_HSVEB
44-63

PVGLB_HSV23
79-99

PVGL2_CVBV
1259-1280





PVGLI_VZVD
278-297

PVGLB_HSV2H
79-99

PVGL2_CVM4
1317-1338





PVGLM_BUNGE
117-136

PVGLB_HSV2S
65-85

PVGL2_CVMA5
1265-1286





PVGLM_PHV
152-171

PVGLB_HSV6U
72-92

PVGL2_CVMJH
1176-1197





PVGLM_PTPV
 997-1016

PVGLB_HSVB2
279-299

PVGLB_HSV11
83-104





PVGLM_PUUMH
155-174

PVGLB_HSVSA
63-83

PVGLB_HSV1F
 82-103





PVGLM_PUUMS
155-174

PVGLB_MCMVS
738-758

PVGLB_HSV1K
 82-103





PVGLM_RVFV
830-849

PVGLF_PI3H4
283-303

PVGLB_HSV1P
 83-104





PVGLM_RVFVZ
830-849

PVGLG_RABVE
454-474

PVGLB_MCMVS
135-156





PVGLM_UUK
655-674

PVGLG_RABVH
454-474

PVGLC_PRVIF
446-467





PVGLY_LYCVW
 89-108

PVGLG_RABVP
454-474

PVGLF_CDVO
336-357





PVGNB_CPMV
1165-1184

PVGLG_RABVS
454-474

PVGLF_MEASE
224-245





PVM3_REOVD
521-540

PVGLG_RABVT
454-474

PVGLF_MEASI
227-248





PVME1_CVBM
171-190

PVGLH_MCMVS
670-690

PVGLF_MEASY
224-245





PVME1_CVH22
136-155

PVGLM_BUNL7
1325-1345

PVGLF_MUMPM
446-467





PVME1_CVPFS
174-193

PVGLM_BUNSH
1325-1345

PVGLF_MUMPR
446-467





PVME1_CVPPU
174-193

PVGLM_BUNYW
 996-1016

PVGLF_MUMPS
446-467





PVME1_CVPRM
174-193

PVGLM_HANTB
 999-1019

PVGLF_PHODV
305-326





PVME1_CVTKE
171-190

PVGLM_HANTH
1000-1020

PVGLF_PI1HC
456-477








PVGLM_HANTL
1001-1021

PVGLF_PI2H
450-471








PVGLM_HANTV
1001-1021

PVGLF_PI2HG
450-471








PVGLM_RVFVZ
1156-1176

PVGLF_PI2HT
450-471








PVGLM_SEOUR
1000-1020

PVGLF_PI3B
405-426
453-474








PVGLM_SEOUS
 999-1019

PVGLF_PI3H4
453-474








PVGLM_UUK
925-945

PVGLF_RINDK
220-241








PVGLY_LYCVA
12-32

PVGLF_RINDL
220-241








PVGLY_LYCVW
12-32

PVGLF_SEND5
460-481








PVGLY_PIARV
12-32

PVGLF_SENDF
460-481








PVGNB_CPMV
141-161

PVGLF_SENDH
460-481








PVMAT_MUMPS
310-330

PVGLF_SENDJ
460-481








PVMAT_NDVA
309-329

PVGLF_SENDZ
460-481








PVMAT_NDVB
309-329

PVGLF_SV41
453-474








PVMAT_PI2HT
308-328

PVGLF_SV5
446-467








PVMAT_PI4HA
312-332

PVGLH_HCMVA
691-712








PVMAT_PI4HB
312-332

PVGLH_HCMVT
690-711








PVMAT_SV41
308-328

PVGLH_HSVE4
304-325








PVMAT_SV5
308-328

PVGLH_HSVEB
297-318








PVME1_IBV6
74-94

PVGLH_HSVSA
658-679








PVME1_IBVB
74-94

PVGLI_HSV2
 2-23








PVME1_IBVB2
74-94

PVGLI_HSV23
 2-23








PVME1_IBVK
74-94

PVGLM_BUNGE
197-218








PVMSA_HPBDB
201-221

PVGLM_BUNL7
190-211








PVMSA_HPBGS
209-229

PVGLM_BUNSH
190-211








PVMSA_HPBHE
293-313

PVGLM_BUNYW
193-214








PVMSA_WHV1
207-227

PVGLY_LASSG
237-258








PVMSA_WHV59
212-232

PVGLY_LASSJ
238-259








PVMSA_WHV7
212-232

PVGP8_EBV
67-88








PVMSA_WHV8
212-232

PVMO1_VACCC
281-302








PVMSA_WHVBI
212-232

PVMO1_VACCV
230-251








PVMSA_WHVW6
63-83

PVMAT_HRSVA
139-160











PVMAT_RINDK
200-221
239-260











PVMAT_TRTV
122-143











PVME1_CVHOC
64-85











PVMSA_HPBDB
201-222











PVMSA_HPBVO
70-91











PVMSA_HPBV2
244-265











PVMSA_HPBV4
244-265











PVMSA_HPBV9
244-265











PVMSA_HPBVA
233-254











PVMSA_HPBVD
70-91











PVMSA_HPBVI
233-254











PVMSA_HPBVJ
233-254











PVMSA_HPBVL
233-254











PVMSA_HPBVN
70-91











PVMSA_HPBVO
233-254











PVMSA_HPBVP
244-265











PVMSA_HPBVR
244-265











PVMSA_HPBVS
70-91











PVMSA_HPBVW
233-254











PVMSA_HPBVY
233-254











PVMSA_HPBVZ
233-254











PVMT2_IAANN
25-46











PVMT2_IABAN
25-46











PVMT2_IAFOW
25-46











PVMT2_IAFPR
25-46











PVMT2_IAFPW
25-46











PVMT2_IALE1
25-46











PVMT2_IALE2
25-46











PVMT2_IAMAN
25-46











PVMT2_IAPUE
25-46











PVMT2_IASIN
25-46











PVMT2_IAUDO
25-46











PVMT2_IAWIL
25-46
















TABLE XII







Search Results Summary for P7CTLZIP, P8CTLZIP, and P9CTLZIP Motifs









P7CTLZIP
P8CTLZIP
P9CTLZIP


LIBRARY FILE
LIBRARY FILE
LIBRARY FILE


















PENV_BAEVM
202-224

PENV1_FRSFV
380-403

PENV_BLVAF
303-327



PENV_HV1B1
498-520

PENV2_FRSFV
380-403

PENV_BLVAU
303-327


PENV_HV1B8
493-516

PENV_BIVO6
178-201

PENV_BLVAV
303-327


PENV_HV1BN
494-516

PENV_BIV27
207-230

PENV_BLVB2
303-327


PENV_HV1BR
503-525

PENV_FOAMV
864-887

PENV_BLVB6
303-327


PENV_HV1EL
495-517

PENV_HV1Z3
175-198

PENV_BLVJ
303-327


PENV_HV1H2
498-520

PENV_HV2BE
 3-26
781-804
PENV_FIVPE
781-805


PENV_HV1H3
498-520

PENV_HV2CA
750-773

PENV_FIVSD
779-803


PENV_HV1J3
510-532

PENV_HV2D1
 3-26
772-795
PENV_FIVT2
780-804


PENV_HV1JR
490-512

PENV_HV2G1
772-795

PHEMA_CVBLY
391-415


PENV_HV1KB
504-526

PENV_HV2NZ
777-800

PHEMA_CVBM
391-415


PENV_HV1MA
500-522

PENV_JSRV
541-564

PHEMA_CVBQ
391-415


PENV_HV1MF
496-518

PENV_SFV1
864-887

PHEMA_CVHOC
391-415


PENV_HV1ND
488-510

PENV_SFV3L
861-884

PHEMA_INCCA
442-466


PENV_HV1PV
498-520

PENV_SIVM1
803-826

PHEMA_INCEN
430-454


PENV_HV1S1
489-511

PENV_SIVMK
802-825

PHEMA_INCGL
430-454


PENV_HV1Z2
123-145
495-517
PENV_SIVML
801-824

PHEMA_INCHY
429-453


PENV_HV1Z6
497-519

PENV_SIVS4
806-829

PHEMA_INCJH
443-467


PENV_HV1Z8
505-527

PENV_SIVSP
810-833

PHEMA_INCKY
429-453


PENV_HV1ZH
498-520

PHEMA_CDVO
200-223

PHEMA_INCMI
429-453


PENV_JSRV
376-398

PHEMA_PI2H
65-88

PHEMA_INCNA
429-453


PENV_MPMV
213-235

PHEMA_PI2HT
65-88

PHEMA_INCP1
430-454


PENV_SRV1
213-235

PVF11_VACCC
161-184

PHEMA_INCP2
430-454


PHEMA_IAAIC
37-59

PVF15_VACCC
25-48

PHEMA_INCP3
430-454


PHEMA_IABAN
21-43

PVF16_VACCP
 3-26

PHEMA_INCTA
430-454


PHEMA_IADA3
37-59

PVG1L_AMEPV
313-336

PHEMA_INCYA
430-454


PHEMA_IADH2
21-43

PVG28_HSVI1
491-514

PHEMA_MUMPM
101-125


PHEMA_IADH3
21-43

PVG43_HSVI1
322-345

PHEMA_MUMPR
101-125


PHEMA_IADH4
21-43

PVG52_HSVI1
229-252

PHEMA_MUMPS
101-125


PHEMA_IADH5
21-43

PVG67_HSVI1
722-745

PHEMA_PI1HW
29-53


PHEMA_IADH6
21-43

PVGL2_CVBF
10-33

PVENV_BEV
62-86


PHEMA_IADH7
21-43

PVGL2_CVBL9
651-674

PVFO5_VACCC
280-304


PHEMA_IADM2
37-59

PVGL2_CVBLY
10-33

PVFO5_VACCP
280-304


PHEMA_IADMA
28-50

PVGL2_CVM4
1267-1290

PVFO5_VACCV
281-305


PHEMA_IADU3
37-59

PVGL2_CVMA5
1215-1238

PVFO9_VACCC
176-200


PHEMA_IAEN6
21-43

PVGL2_CVMJH
1126-1149

PVFO9_VACCV
176-200


PHEMA_IAEN7
37-59

PVGL2_CVPFS
1274-1297

PVGO1_VZVD
58-82


PHEMA_IAMAO
37-59

PVGL2_CVPPU
1272-1295

PVG10_HSVSA
355-379


PHEMA_IAME1
37-59

PVGL2_CVPR8
1050-1073

PVG12_HSVSA
68-92


PHEMA_IAME2
37-59

PVGL2_CVPRM
1050-1073

PVG19_HSVI1
88-112


PHEMA_IAME6
21-43

PVGL2_FIPV
1277-1300

PVG28_HSVI1
173-197


PHEMA_IANT6
37-59

PVGL2_IBV6
196-219

PVG43_HSVI1
109-133


PHEMA_IAQU7
21-43

PVGL2_IBVB
195-218

PVG87_HSVI1
108-132
1005-1029


PHEMA_IATKM
33-55

PVGL2_IBVD2
196-219

PVG72_HSVI1
720-744


PHEMA_IAUDO
37-59

PVGL2_IBVD3
196-219

PVGF1_IBVB
3601-3625


PHEMA_IAVI7
38-60

PVGL2_IBVK
195-218

PVGLB_HSVMD
589-613


PHEMA_IAX31
37-59

PVGL2_IBVM
195-218

PVGLB_ILTV6
597-621


PHEMA_IAZCO
37-59

PVGL2_IBVU1
178-201

PVGLB_ILTVS
607-631


PHEMA_IAZH2
21-43

PVGL2_IBVU2
178-201

PVGLB_ILTVT
607-631


PHEMA_IAZH3
21-43

PVGL2_IBVU3
178-201

PVGLE_HSV11
413-437


PHEMA_IAZUK
37-59

PVGLB_HCMVA
535-558

PVGLE_VZVD
469-493


PHEMA_PHODV
36-58

PVGLB_HCMVT
536-559

PVGLF_SV5
401-425


PHEMA_PI2H
65-87

PVGLB_HSVSA
483-506

PVGLH_HCMVA
574-598


PHEMA_PI2HT
65-87

PVGLB_MCMVS
566-589

PVGLH_HCMVT
573-597


PVFP7_CAPVK
 89-111

PVGLC_HSV11
467-490

PVGLH_HSV11
443-467
803-827


PVFUS_VACC6
72-94

PVGLC_HSV1K
467-490

PVGLH_HSV1E
443-467
803-827


PVGO1_HSVI1
317-339

PVGLC_HSV2
435-458

PVGLM_BUNL7
31-55


PVGO3_VACCC
50-72

PVGLC_HSV23
436-459

PVGLM_BUNSH
31-55


PVGO3_VARV
50-72

PVGLM_BUNL7
1387-1410

PVGLM_HANTH
694-718


PVGO4_VACCC
11-33

PVGLM_BUNSH
1387-1410

PVGLM_RVFV
344-368


PVGO4_VARV
11-33

PVGLM_UUK
966-989

PVGLM_RVFVZ
344-368


PVG19_HSVI1
 88-110

PVGLY_JUNIN
12-35

PVGLM_UUK
561-585


PVG28_HSVI1
173-195

PVGLY_LASSG
12-35

PVGNM_CPMV
311-335


PVG29_HSVI1
20-42

PVGLY_LASSJ
12-35

PVGP2_EBV
657-681


PVG46_HSVI1
134-156

PVGLY_LYCVA
12-35

PVGP3_EBV
854-878


PVG48_HSVSA
71-93

PVGLY_LYCVW
12-35

PVM1_REOVD
280-304


PVG58_HSVSA
266-288

PVGLY_MOPEI
12-35

PVM1_REOVL
280-304


PVG59_HSVI1
267-289

PVGLY_TACV
12-35

PVM21_REOVD
168-192


PVG5_SPV4
42-64

PVGLY_TACV5
12-35

PVM22_REOVD
168-192


PVG60_HSVI1
63-75

PVGLY_TACV7
12-35

PVM2_REOVJ
168-192


PVG65_HSVI1
1347-1369

PVGLY_TACVT
12-35

PVM2_REOVL
168-192


PVG6_SPV1R
60-82

PVGNM_CPMV
741-764

PVMAT_MEASI
 87-111


PVGL2_IBV6
1056-1078

PVM1_REOVD
324-347
454-477
PVMAT_SSPVB
314-338


PVGL2_IBVB
1055-1077

PVM1_REOVL
454-477

PVME1_CVBM
137-161


PVGL2_IBVD2
1056-1078

PVMAT_MUMPS
227-250

PVME1_CVHOC
137-161


PVGL2_IBVK
1055-1077

PVMSA_HPBDB
269-292

PVME1_CVTKE
137-161


PVGL2_IBVM
1055-1077

PVMSA_HPBDC
268-291

PVME1_IBV6
74-98


PVGLB_HSVSU
117-139

PVMSA_HPBDU
231-254

PVME1_IBVB
74-98


PVGLB_HSVB2
745-767

PVMSA_HPBDW
269-292

PVME1_IBVB2
74-98


PVGLC_HSVMB
399-421

PVMSA_HPBHE
236-259

PVME1_IBVK
74-98


PVGLC_HSVMG
398-420




PVMSA_HPBGS
271-295


PVGLC_HSVMM
399-421




PVMSA_WHV1
289-293


PVGLF_BRSVA
265-287
482-504



PVMSA_WHV59
274-298


PVGLF_BRSVC
484-506




PVMSA_WHV7
274-298


PVGLF_BRSVR
484-506




PVMSA_WHV8
274-298


PVGLF_HRSV1
484-506




PVMSA_WHV8I
274-298


PVGLF_HRSVA
484-506




PVMSA_WHVW6
125-149


PVGLF_HRSVL
484-506


PVGLF_HRSVR
484-506


PVGLF_TRTV
452-474


PVGLG_IHNV
77-99


PVGLG_VHSVO
406-428


PVGLH_HSVE4
814-836


PVGLH_HSVEB
807-829


PVGLI_HCMVA
158-180


PVGLM_PTPV
743-765


PVGLP_BEV
430-452
1546-1568


PVGLY_LASSG
426-448


PVGLY_LASSJ
427-449


PVGLY_MOPEI
425-447


PVGP2_EBV
657-679


PVGP3_EBV
854-876


PVM1_REOVD
414-436


PVM1_REOVL
414-436


PVM3_REOVD
304-326


PVMAT_PI1HC
195-217


PVMAT_PI2HT
132-154


PVMAT_SENDF
195-217


PVMAT_SENDH
195-217


PVMAT_SENDZ
195-217


PVMAT_SV41
132-154


PVMEM_EBV
131-153


PVMP_CERV
293-315
















TABLE XIII







SEARCH RESULTS SUMMARY FOR P12LZIPC MOTIF


















PCGENE
P12CTLZIP
All Viruses (No Bacteriophages)











FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9





P194K_TRVSY
POTENTIAL 194 KD PROTEIN
TOBACCO RATTLE VIRUS
360-378
463-478
600-619
641-668
1011-1030
1299-1325
1385-1409






(STRAIN SYM)


P3BHS_VACCC
3BETA-HSD
VACCINIA VIRUS (STRAIN
41-56
297-321




COPENHAGEN)


P3BHS_VACCV
3BETA-HSD
VACCINIA VIRUS (STRAIN WR)
41-56
297-321


P3BHS_VARV
3BETA-HSD
VARIOLA VIRUS
41-56


PAT3H_FOWPM
ANTITHROMBIN-III
FOWLPOX VIRUS (ISOLATE
47-69



HOMOLOG
HP-438[MUNICH])


PATI1_VACCV
94 KD A-TYPE INCLU-
VACCINIA VIRUS
387-410



SION PROTEIN
(STRAIN WR)


PATI1_VARV
81 KD A-TYPE INCLUSION
VARIOLA VIRUS
388-411



PROTEIN


PATI2_HSV11
UL46
HERPES SIMPLEX VIRUS
279-305




(TYPE I/STRAIN 17)


PATI2_HSV1F
UL46
HERPES SIMPLEX VIRUS
279-305




(TYPE I/STRAIN F)


PATI2_HSVEB
ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE I
197-222



FACTOR 82 KD PROTEIN
(STRAIN AB4P)


PATI2_VACCC
PUTATIVE A-TYPE INCLUSION
VACCINIA VIRUS (STRAIN
215-241



PROTEIN
COPENHAGEN)


PATI2_VZVD
ALPHA TRANS-INDUCING
VARICELLA-ZOSTER VIRUS
61-79
377-397



FACTOR 74 KD PROTEIN
(STRAIN DUMAS)


PATI3_VACCV
PUTATIVE A-TYPE INCLUSION
VACCINIA VIRUS (STRAIN WR)
47-73



PROTEIN


PATIN_HSVBP
ALPHA TRANS-INDUCING
BOVINE HERPESVIRUS TYPE I
101-120
277-292



PROTEIN
(STRAIN P8-2)


PATIN_HSVE4
ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE 4
104-123



PROTEIN


PATIN_HSVEB
ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE 1
129-148



PROTEIN
(STRAIN AB4P)


PATIN_VZVD
ALPHA TRANS-INDUCING
VARICELLA-ZOSTER VIRUS
203-230



PROTEIN
(STRAIN DUMAS)


PATI_COWPX
A-TYPE INCLUSION PROTEIN
COWPOX VIRUS
389-412
1102-1128


PB2_BBV
B2 PROTEIN
BLACK BEETLE VIRUS
31-52


PB701-HSV6G
TRANSCRIPTIONAL
HERPES SIMPLEX VIRUS
55-78



REGULATORY PROTEIN
(TYPE 6/STRAIN GS)


PBCRF_EBV
BCRF1 PROTEIN PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN
96-123




B95-8)


PBRL1_EBV
TRANSCRIPTION ACTIVATOR
EPSTEIN-BARR VIRUS
16-32
200-224



BRLF1
(STRAIN B95-8)


PCAHH_VACCC
CELL SURFACE-BINDING
VACCINIA VIRUS (STRAIN
188-203



PROTEIN
COPENHAGEN)


PCAHH_VACCV
CELL SURFACE-BINDING
VACCINIA VIRUS (STRAIN WR)
188-203



PROTEIN


PCAHH_VARV
CELL SURFACE-BINDING
VARIOLA VIRUS
188-203



PROTEIN


PCCPH_HSVSA
COMPL CONTROL PROTEIN
HERPESVIRUS SAIMIRI
326-348



HOMOLOG PREC
(STRAIN 11)


PCELF_HSV11
CELL FUSION PROTEIN
HERPES SIMPLEX VIRUS
178-196
212-238
286-309



PRECURSOR
(TYPE 1/STRAIN 17)


PCELF_HSV1K
CELL FUSION PROTEIN
HERPES SIMPLEX VIRUS
178-196
212-238



PRECURSOR
(TYPE 1/STRAIN KOS)


PCELF_HSV2H
CELL FUSION PROTEIN
HERPES SIMPLEX VIRUS
178-196
212-238
285-309



PRECURSOR
(TYPE 2/STRAIN HG52)


PCELF_HSVEB
CELL FUSION PROTEIN
HERPESVIRUS TYPE 1
205-223
249-268



PRECURSOR
(STRAIN KENTUCKY A)


PCELF_VZVD
CELL FUSION PROTEIN
VARICELLA-ZOSTER VIRUS
246-269



PRECURSOR
(STRAIN DUMAS)


PCGH2_HSVSA
CYCLIN HOMOLOG
HERPESVIRUS SAIMIRI
35-61
216-242




(STRAIN 11)


PCOA1_BFDV
COAT PROTEIN VP1
BUDGERIGAR FLEDGLING
93-110




DISEASE VIRUS


PCOA1_POVBA
COAT PROTEIN VP1
POLYOMAVIRUS BK (STRAIN AS)
25-52
97-123
233-251


PCOA1_POVBK
COAT PROTEIN VP1
POLYOMAVIRUS BK
25-52
97-123
233-251


PCOA1_POVBO
COAT PROTEIN VP1
BOVINE POLYOMAVIRUS
96-120


PCOA1_POVHA
COAT PROTEIN VP1
HAMSTER POLYOMAVIRUS
16-43


PCOA1_POVJC
COAT PROTEIN VP1
POLYOMAVIRUS JC
17-44
89-115
225-243


PCOA1_POVLY
COAT PROTEIN VP1
LYMPHOTROPIC POLYOMAVIRUS
97-123


PCOA1_POVMK
COAT PROTEIN VP1
MOUSE POLYOMAVIRUS (STRAIN
142-160
231-249




KILHAM)


PCOA1_SV40
COAT PROTEIN VP1
SIMIAN VIRUS 40
27-44
99-125
235-253


PCOA1_TTV1
COAT PROTEIN TP1
THERMOPROTEUS TENAX VIRUS 1
80-103




(STRAIN KRA1)


PCOA2_POVBO
COAT PROTEIN VP2
BOVINE POLYOMAVIRUS
77-104


PCOA2_POVLY
COAT PROTEIN VP2
LYMPHOTROPIC POLYOMAVIRUS
79-102


PCOA2_POVM3
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
205-226




(STRAIN 3)


PCOA3_TTV1
COAT PROTEIN TP3
THERMOPROTEUS TENAX VIRUS
33-55




1 (STRAIN KRA1)


PCOAT_ABMVW
COAT PROTEIN
ABUTILON MASAIC VIRUS
148-171




(ISOLATE WEST INDIA)


PCOAT_BOOLV
COAT PROTEIN PRECURSOR
BOOLARRA VIRUS
383-401


PCOAT_CHVP1
MAJOR CAPSID PROTEIN
PARAMECIUM BURSARIA
364-387
392-409




CHLORELLA VIRUS 1


PCOAT_CLVK
COAT PROTEIN
CASSAVA LATENT VIRUS (STRAIN
165-188




WEST KENYAN 844)


PCOAT_CLVN
COAT PROTEIN
CASSAVA LATENT VIRUS (STRAIN
165-188




NIGERIAN)


PCOAT_CMVSI
COAT PROTEIN
CYMBIDIUM MOSAIC VIRUS
58-76




(STRAIN SINGAPORE)


PCOAT_CNV
COAT PROTEIN
CUCUMBER NECROSIS VIRUS
19-42


PCOAT_CSMV
COAT PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
219-238


PCOAT_CTV36
COAT PROTEIN
CITRUS TRISTEZA VIRUS
72-94




(ISOLATE T36)


PCOAT_FCVC6
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN
564-587
642-664




CFI/68 FIV)


PCOAT_FCVF4
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN
564-587
642-657




JAPANESE F4)


PCOAT_FCVF9
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN F9)
567-590
645-660


PCOAT_FPV
COAT PROTEIN VP1
FELINE PANLEUKOPENIA VIRUS
690-705


PCOAT_FPV19
COAT PROTEIN VP1
FELINE PANLEUKOPENIA VIRUS
690-705




(STRAIN 193)


PCOAT_HEVS
COAT PROTEIN
HELENIUM VIRUS S
47-66


PCOAT_MEVA
COAT PROTEIN VP1
MINK ENTERITIS VIRUS
685-700




(STRAIN ABASHIRI)


PCOAT_MNSV
COAT PROTEIN
MELON NECROTIC SPOT VIRUS
37-53


PCOAT_MSTV
COAT PROTEIN
MAIZE STRIPE VIRUS
176-197
204-227


PCOAT_NMV
COAT PROTEIN
NARCISSUS MOSAIC VIRUS
67-86


PCOAT_NODAV
COAT PROTEIN PRECURSOR
NODAMURA VIRUS
379-394


PCOAT_ORSV
COAT PROTEIN
ODONTOGLOSSUM RINGSPOT
104-130




VIRUS


PCOAT_OYMV
COAT PROTEIN
ONONIS YELLOW MOSAIC VIRUS
35-52


PCOAT_PAVC2
COAT PROTEIN VP2
CANINE PARVOVIRUS
547-562




(TYPE 2/STRAIN A72)


PCOAT_PAVC7
COAT PROTEIN VP1
CANINE PARVOVIRUS (STRAIN
685-700




780929)


PCOAT_PAVCD
COAT PROTEIN VP1
CANINE PARVOVIRUS (STRAIN
700-715




CPV-D CORNELL 320)


PCOAT_PAVCN
COAT PROTEIN VP1
CANINE PARVOVIRUS (STAIN N)
711-726


PCOAT_PEMV
COAT PROTEIN PRECURSOR
PEPPER MOTTLE VIRUS
273-295


PCOAT_PMV
COAT PROTEIN
PAPAYA MOSAIC POTEXVIRUS
85-103


PCOAT_PPMVS
COAT PROTEIN
PEPPER MILD MOTTLE VIRUS
64-84
103-129




(STRAIN SPAIN)


PCOAT_PVSP
COAT PROTEIN
POTATO VIRUS S (STRAIN
129-147




PERUVIAN)


PCOAT_RSV
COAT PROTEIN
RICE STRIPE VIRUS
128-152


PCOAT_SMWLM
COAT PROTEIN
SATELLITE MAIZE WHITE LINE
51-67




MOSAIC VIRUS


PCOAT_SMYEA
COAT PROTEIN
STRAWBERRY MILD YELLOW
57-72




EDGE-ASSOCIATED VIRUS


PCOAT_TAMV
GENOME POLYPROTEIN
TAMARILLO MOSAIC VIRUS
222-237


PCOAT_TBSVB
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS
359-383




(STRAIN BS-3)


PCOAT_TCV
COAT PROTEIN
TURNIP CRINKLE VIRUS
73-89


PCOAT_TGMV
COAT PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
154-177


PCOAT_TMGMV
COAT PROTEIN
TOBACCO MILD GREEN MOSAIC
102-128




VIRUS (TMV STRAIN U2)


PCOAT_TMV
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128




(VULGARE)


PCOAT_TMV06
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128




(STRAIN 06)


PCOAT_TMVDA
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128




(STRAIN DAHLEMENSE)


PCOAT_TMVER
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128




(STRAIN ER)


PCOAT_TMVHR
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128




(STRAIN HOLMES RIBGRASS (HR))


PCOAT_TMVO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128




(STRAIN O)


PCOAT_TMVOM
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128




(STAIN OM)


PCOAT_TMVTO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
102-128




(STRAIN TOMATO/L)


PCOAT_TNVA
COAT PROTEIN
TOBACCO NECROSIS VIRUS
119-142




(STRAIN A)


PCOAT_TNVD
COAT PROTEIN
TOBACCO NECROSIS VIRUS
108-134




(STRAIN D)


PCOLL_HSVSC
COLLAGEN-LIKE PROTEIN
HERPESVIRUS SAIMIRI
71-96




(SUBGROUP C/STRAIN 488)


PCORA_HPBV2
CORE ANTIGEN
HEPATITIS B VIRUS
79-100




(SUBTYPE ADW2)


PCORA_HPBVA
CORE ANTIGEN
HEPATITIS B VIRUS
15-31




(STRAIN ALPHA1)


PCORA_HPBVZ
CORE ANTIGEN
HEPATITIS B VIRUS
79-100




(SUBTYPE ADYW)


PDNBI_ADE02
PROBABLE DNA-BINDING
HUMAN ADENOVIRUS TYPE 2
71-93



PROTEIN


PDNBI_EBV
MAJOR DNA-BINDING
EPSTEIN-BARR VIRUS
649-673



PROTEIN
(STRAIN B95-8)


PDNBI_HCMVA
MAJOR DNA-BINDING
HUMAN CYTOMEGALOVIRUS
681-708



PROTEIN
(STRAIN AD169)


PDNBI_HSV11
MAJOR DNA-BINDING
HERPES SIMPLEX VIRUS
459-476
597-620



PROTEIN
(TYPE 1/STRAIN 17)


PDNBI_HSV1F
MAJOR DNA-BINDING
HERPES SIMPLEX VIRUS
459-476
597-620



PROTEIN
(TYPE 1/STRAIN F)


PDNBI_HSV1K
MAJOR DNA-BINDING
HERPES SIMPLEX VIRUS
459-476
597-620



PROTEIN
(TYPE 1/STRAIN KOS)


PDNBI_HSVB2
MAJOR DNA-BINDING
BOVINE HERPESVIRUS TYPE 2
455-472
596-616



PROTEIN
(STRAIN BMV)


PDNBI_HSVEB
MAJOR DNA-BINDING
EQUINE HERPESVIRUS TYPE 1
810-831



PROTEIN
(STRAIN AD4P)


PDNBI_HSVSA
MAJOR DNA-BINDING
HERPESVIRUS SAIMIRI
108-127
610-629
869-887
974-1000



PROTEIN
(STRAIN 11)


PDNBI_MCMVS
MAJOR DNA-BINDING
MURINE CYTOMEGALOVIRUS
657-684



PROTEIN
(STRAIN SMITH)


PDNBI_SCMVC
MAJOR DNA-BINDING
SIMIAN CYTOMEGALOVIRUS
188-212
643-670



PROTEIN
(STRAIN COLBURN)


PDNLI_VARV
DNA LIGASE
VARIOLA VIRUS
269-294


PDPOL_ADE02
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 2
264-283
828-850


PDPOL_ADE05
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 5
264-283
828-850


PDPOL_ADE07
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 7
331-350
494-517
894-916


PDPOL_ADE12
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 12
262-281
562-583
826-848


PDPOL_CBEPV
DNA POLYMERASE
CHORISTONEURA BIENNIS
430-454
654-678
732-757




ENTOMOPOXVIRUS


PDPOL_CHVN2
DNA POLYMERASE
CHLORELLA VIRUS NY-2A
424-442


PDPOL_CHVP1
DNA POLYMERASE
PARAMECIUM BURSARIA
153-172
424-442




CHLORELLA VIRUS 1


PDPOL_EBV
DNA POLYMERASE
EPSTEIN-BARR VIRUS
354-374
438-463
524-542
667-687
973-990




(STRAIN B95-8)


PDPOL_FOWPV
DNA POLYMERASE
FOWLPOX VIRUS
60-77
220-247


PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS
569-587
945-960
1029-1053




(STRAIN AD169)


PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
4-29
157-174
522-541
554-572




(BROWN SHANGHAI DUCK




ISOLATE S5)


PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
4-29
157-174
521-540
553-571




(STRAIN CHINA)


PDPOL_HPBDU
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
181-200
213-231


PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (WHITE
4-29
157-174
522-541
554-572




SHANGHAI DUCK ISOLATE S31)


PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS
448-475




VIRUS


PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
4-29
554-572


PDPOL_HPBV2
DNA POLYMERASE
HEPATITIS B VIRUS
412-439
447-463
763-780




(SUBTYPE ADW2)


PDPOL_HPBV4
DNA POLYMERASE
HEPATITIS B VIRUS
410-417




(SUBTYPE ADR4)


PDPOL_HPBV9
DNA POLYMERASE
HEPATITIS B VIRUS
412-439
447-463
763-780




(SUBTYPE ADW/STRAIN 991)


PDPOL_HPBVA
DNA POLYMERASE
HEPATITIS B VIRUS
80-96
399-426
434-450
750-767




(STRAIN ALPHA1)


PDPOL_HPBVI
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
445-468
761-778




ADW/STRAIN INDONESIA/




PIDW420)


PDPOL_HPBVJ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
445-468
761-778




ADW/STRAIN JAPAN/PJDW233)


PDPOL_HPBVL
DNA POLYMERASE
HEPATITIS B VIRUS (STRAIN
80-96
399-426
434-457
750-767




LSH/CHIMPANZEE ISOLATE)


PDPOL_HPBVM
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
760-777




ADR/MUTANT)


PDPOL_HPBVO
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
445-468
761-778




ADW/STRAIN OKINAWA/




PODW282)


PDPOL_HPBVP
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
412-439
447-463




ADW/STRAIN PHILIPPINO/




PFDW294)


PDPOL_HPBVR
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
410-437
761-778




ADR)


PDPOL_HPBVW
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
82-98
405-432
440-456




ADW)


PDPOL_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
399-426
434-457
750-767




AYW)


PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE
80-96
399-426
434-457




ADYW)


PDPOL_HSV11
DNA POLYMERASE
HERPES SIMPLEX VIRUS
797-817
877-897
1073-1090




(TYPE 1/STRAIN 17)


PDPOL_HSV1A
DNA POLYMERASE
HERPES SIMPLEX VIRUS
797-817
877-897
1073-1090




(TYPE 1/STRAIN ANGELOTTI)


PDPOL_HSV1K
DNA POLYMERASE
HERPES SIMPLEX VIRUS
797-817
877-897
1073-1090




(TYPE 1/STRAIN KOS)


PDPOL_HSV1S
DNA POLYMERASE
HERPES SIMPLEX VIRUS
797-817
877-897
1073-1090




(TYPE 1/STRAIN SC16)


PDPOL_HSV21
DNA POLYMERASE
HERPES SIMPLEX VIRUS
802-822
882-902
1078-1095




(TYPE 2/STRAIN 186)


PDPOL_HSV6U
DNA POLYMERASE
HERPES SIMPLEX VIRUS
652-672
786-803
858-882




(TYPE 6/STRAIN UGANDA-1102)


PDPOL_HSVEB
DNA POLYMERASE
EQUINE HERPESVIRUS TYPE 1
283-299
377-392
454-477
798-818
878-898




(STRAIN AB4P)


PDPOL_HSVI1
DNA POLYMERASE
ICTALURID HERPESVIRUS 1
257-275
397-418


PDPOL_HSVSA
DNA POLYMERASE
HERPESVIRUS SAIMIRI
118-137
297-319
344-364
514-532
955-972




(STRAIN 11)


PDPOL_MCMVS
DNA POLYMERASE
MURINE CYTOMEGALOVIRUS
303-322
535-553
780-802




(STRAIN SMITH)


PDPOL_NPVAC
DNA POLYMERASE
AUTOGRAPHA CALIFORNICA
518-536
676-697




NUCLEAR POLYHEDROSIS VIRUS


PDPOL_VARV
DNA POLYMERASE
VARIOLA VIRUS
421-437


PDPOL_VZVD
DNA POLYMERASE
VARICELLA-ZOSTER VIRUS
312-331
363-382
440-463
713-740
757-781
1006-1024




(STRAIN DUMAS)


PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 1
446-473


PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS
451-478




VIRUS 59


PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
451-478


PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
450-477
554-571


PDPOL_WHV8I
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
451-478


PDPOL_WHVW6
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS
123-150




W64 (ISOLATE PWS23)


PDPOM_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS
399-426
434-450
750-767




(SUBTYPE AYW)


PDUT_HCMVA
DUTPASE
HUMAN CYTOMEGALOVIRUS
107-126




(STAIN AD169)


PDUT_HSVE4
DUTPASE
EQUINE HERPESVIRUS TYPE 4
130-154




(STRAIN 1942)


PDUT_HSVEB
DUTPASE
EQUINE HERPESVIRUS TYPE 1
130-149




(STRAIN AB4P)


PDUT_HDVI1
DUTPASE
ICTALURID HERPESVIRUS 1
72-95


PDUT_HSVSA
DUTPASE
HERPESVIRUS SAIMIRI
22-45
79-104
168-183




(STRAIN 11)


PE111_ADEM1
EARLY E1A 11 KD PROTEIN
MOUSE ADENOVIRUS TYPE 1
24-47


PE1A6_ADE07
EARLY E1A 6 3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
8-35


PE1A_ADE04
EARLY E1A 28 KD PROTEIN
HUMAN ADENOVIRUS TYPE 4
104-120


PE1A_ADE07
EARLY E1A 28 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
8-35


PE1A_ADES7
EARLY E1A 28 KD PROTEIN
SIMIAN ADENOVIRUS TYPE 7
173-189
238-254


PE1BL_ADE12
E1B PROTEIN, LARGE
HUMAN ADENOVIRUS TYPE 12
451-467



T-ANTIGEN


PE1BL_ADEC2
E1B PROTEIN, LARGE
CANINE ADENOVIRUS TYPE 2
101-122



T-ANTIGEN


PE1BL_ADENT
EARLY E1B 44 KD PROTEIN
TUPAIA ADENOVIRUS
75-101


PE1BS_ADEC2
E1B PROTEIN, SMALL
CANINE ADENOVIRUS TYPE 2
55-77



T-ANTIGEN


PE1BS_ADEM1
E1B PROTEIN, SMALL
MOUSE ADENOVIRUS TYPE 1
118-138



T-ANTIGEN


PE310_ADE02
EARLY E3B 10 4 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
3-21
34-60



PRECURSOR


PE310_ADE05
EARLY E3B 10 4 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
3-21
33-60



PRECURSOR


PE310_ADE07
EARLY E3B 4 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
3-24



PRECURSOR


PE311_ADE02
EARLY E3A 11 6 KD
HUMAN ADENOVIRUS TYPE 2
27-53



GLYCOPROTEIN


PE311_ADE03
EARLY E3 9 0 KD
HUMAN ADENOVIRUS TYPE 3
19-45



GLYCOPROTEIN


PE311_ADE05
EARLY E3A 10 5 KD
HUMAN ADENOVIRUS TYPE 5
20-46



GLYCOPROTEIN


PE311_ADE07
EARLY E3 7 7 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
36-62


PE314_ADE05
EARLY E3 14 5 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
108-125


PE315_ADE03
EARLY E3B 14 5 KD PROTEIN
HUMAN ADENOVIRUS TYPE 3
52-72



PRECURSOR


PE315_ADE07
EARLY E3B 14 9 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
52-72



PRECURSOR


PE316_ADE03
EARLY E3 16 KD
HUMAN ADENOVIRUS TYPE 3
102-125



GLYCOPROTEIN


PE321_ADE03
EARLY E3 20 5 KD
HUMAN ADENOVIRUS TYPE 3
146-167



GLYCOPROTEIN


PE321_ADE07
EARLY E3 20 5 KD
HUMAN ADENOVIRUS TYPE 7
146-167



GLYCOPROTEIN


PE322_ADEC1
EARLY E3 22 2 KD
CANINE ADENOVIRUS TYPE 1
155-177



GLYCOPROTEIN
(STRAIN GLAXO)


PE3GL_ADEM1
EARLY E3 17 7 KD
MOUSE ADENOVIRUS TYPE 1
105-127



GLYCOPROTEIN


PE411_ADE02
PROBABLE EARLY E4 11 KD
HUMAN ADENOVIRUS TYPE 2
56-77



PROTEIN


PE411_ADE05
PROBABLE EARLY E4 11 KD
HUMAN ADENOVIRUS TYPE 5
56-77



PROTEIN


PE433_ADEM1
PROBABLE EARLY E4 33 KD
MOUSE ADENOVIRUS TYPE 1
61-80



PROTEIN


PE434_ADE02
EARLY E4 34 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
80-106


PEAD_EBV
EARLY ANTIGEN PROTEIN D
EPSTEIN-BARR VIRUS
263-286




(STRAIN B95-8)


PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS
159-184




(STRAIN B95-8)


PEBN2_EBV
EBNA-2 NUCLEAR PROTEIN
EPSTEIN-BARR VIRUS
126-141



(STRAIN B95-8)


PEBN3_EBV
EBNA-3 NUCLEAR PROTEIN
EPSTEIN-BARR VIRUS
113-131
662-683




(STRAIN B95-8)


PEFT1_VARV
EARLY TRANSCRIPTION
VARIOLA VIRUS
21-41



FACTOR 70 KD SUBUNIT


PENV1_FRSFV
ENV POLYPROTEIN
FRIEND SPLEEN FOCUS-FORMIMG
380-407



PRECURSOR
VIRUS


PENV2_FRSFV
ENV POLYPROTEIN
FRIEND SPLEEN FOCUS-FORMING
380-407



PRECURSOR
VIRUS


PENV_AVIR3
ENV POLYPROTEIN
AVIAN RETROVIRUS RPL30
206-225


PENV_AVISU
COAT PROTEIN GP37
AVIAN SARCOMA VIRUS
98-117




(STRAIN UR2)


PENV_BAEVM
ENV POLYPROTEIN
BABOON ENDOGENOUS VIRUS
170-190
202-224




(STRAIN M7)


PENV_BIV06
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
47-68
178-201
434-450
525-546



PRECURSOR
VIRUS (ISOLATE 106)


PENV_BIV27
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
47-68
147-168
207-230
463-479
554-575



PRECURSOR
VIRUS (ISOLATE 127)


PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327




(AMERICAN ISOLATE FLK)


PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327




(AUSTRALIAN ISOLATE)


PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327




(AMERICAN ISOLATE VDM)


PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327




(BELGIUM ISOLATE LB285)


PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327




(BELGIUM ISOLATE LB59)


PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
303-327




(JAPANESE ISOLATE BLV-1)


PENV_FENV1
ENV POLYPROTEIN
FELINE ENDOGENOUS VIRUS
30-47
225-246
630-651



PRECURSOR
ECE1


PENV_FIVPE
ENV POLYPROTEIN
FELINE ENDOGENOUS VIRUS
30-47
225-246
630-651



PRECURSOR
ECE1


PENV_FLVC6
ENV POLYPROTEIN
FELINE LEUKEMIA PROVIRUS
38-55
624-645



PRECURSOR
(CLONE CFE-6)


PENV_FLVGL
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
9-29
447-468
605-626



PRECURSOR
(STRAIN A/GLASGOW-1)


PENV_FLVLB
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
467-488
625-646



PRECURSOR
(STRAIN LAMBDA-B1)


PENV_FLVSA
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
444-465
602-623



PRECURSOR
(STRAIN SARMA)


PENV_FOAMV
ENV POLYPROTEIN
HUMAN SPUMARETROVIRUS
153-174
255-275
300-325
481-496
710-727
864-887
924-951
957-978




(FOAMY VIRUS)


PENV_FSVGA
ENV POLYPROTEIN
FELINE SARCOMA VIRUS
467-488
625-646



PRECURSOR
(STRAIN GARDNER-ARNSTEIN)


PENV_FSVGB
ENV POLYPROTEIN
FELINE SARCOMA VIRUS
447-468
605-626



PRECURSOR
(STRAIN GA)


PENV_FSVSM
ENV POLYPROTEIN
FELINE SARCOMA VIRUS
450-471
608-629



PRECURSOR
(STRAIN SM)


PENV_FSVST
ENV POLYPROTEIN
FELINE SARCOMA VIRUS
467-488



PRECURSOR
(STRAIN SNYDER-THEILEN)


PENV_GALV
ENV POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
519-540



PRECURSOR


PENV_HV1B1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
498-520




VIRUS TYPE 1 (BH10 ISOLATE)


PENV_HV1B8
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
493-515




VIRUS TYPE 1 (BH8 ISOLATE)


PENV_HV1BN
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
494-516




VIRUS TYPE 1 (BRAIN ISOLATE)


PENV_HV1BR
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
503-525




VIRUS TYPE 1 (BRU ISOLATE)


PENV_HV1C4
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
428-448




VIRUS TYPE 1 (CDC-451 ISOLATE)


PENV_HV1EL
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
495-517




VIRUS TYPE 1 (ELI ISOLATE)


PENV_HV1H2
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
498-520




VIRUS TYPE 1 (HXB2 ISOLATE)


PENV_HV1H3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
498-520




VIRUS TYPE 1 (HXB3 ISOLATE)


PENV_HV1J3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
510-532




VIRUS TYPE 1 (JH3 ISOLATE)


PENV_HV1JR
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
490-512




VIRUS TYPE 1 (JRCSF ISOLATE)


PENV_HV1KB
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
504-526
552-579
752-768




VIRUS TYPE 1 (STRAIN KB-1-GP32)


PENV_HV1MA
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
500-522




VIRUS TYPE 1 (MAL ISOLATE)


PENV_HV1MF
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
496-518




VIRUS TYPE 1 (MFA ISOLATE)


PENV_HV1N5
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
178-203




VIRUS TYPE 1 (NEW YORK-5




ISOLATE)


PENV_HV1ND
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
488-510




VIRUS TYPE 1 (NDK ISOLATE)


PENV_HV1OY
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
123-140




VIRUS TYPE 1 (OYI ISOLATE)


PENV_HV1PV
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
498-520




VIRUS TYPE 1 (PV22 ISOLATE)


PENV_HV1RH
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
445-460




VIRUS TYPE 1 (RF/HAT ISOLATE)


PENV_HV1S1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
489-511
738-754




VIRUS TYPE 1 (SF162 ISOLATE)


PENV_HV1S3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
300-322




VIRUS TYPE 1 (SF33 ISOLATE)


PENV_HV122
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
123-145
410-427
495-517




VIRUS TYPE 1 (Z2/CDC-Z34




ISOLATE)


PENV_HV1Z3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
117-133
175-198




VIRUS TYPE 1 (ZAIRE 3 ISOLATE)


PENV_HV1Z6
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
497-519




VIRUS TYPE 1 (ZAIRE 6 ISOLATE)


PENV_HV1Z8
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
505-527




VIRUS TYPE 1 (Z-84 ISOLATE)


PENV_HV1ZH
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
123-142
438-453
498-520




VIRUS TYPE 1 (ZAIRE HZ321




ISOLATE)


PENV_HV2BE
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
3-26
750-775
781-804




VIRUS TYPE 2 (ISOLATE BEN)


PENV_HV2CA
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
750-777




VIRUS TYPE 2 (ISOLATE CAM2)


PENV_HV2D1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
3-26
741-766
772-795




VIRUS TYPE 2 (ISOLATE D194)


PENV_HV2D2
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
9-28




VIRUS TYPE 2 (ISOLATE D205.7)


PENV_HV2G1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
741-766
772-795




VIRUS TYPE 2 (ISOLATE GHANA-1)


PENV_HV2NZ
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
742-767
777-800




VIRUS TYPE 2 (ISOLATE NIH-Z)


PENV_HV2RO
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
751-776




VIRUS TYPE 2 (ISOLATE ROD)


PENV_HV2SB
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
743-768
778-804




VIRUS TYPE 2 (ISOLATE SBLISY)


PENV_HV2ST
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY
745-770




VIRUS TYPE 2 (ISOLATE ST)


PENV_JSRV
ENV POLYPROTEIN
SHEEP PULMONARY
104-119
299-325
376-398
541-564



PRECURSOR
ADENOMATOSIS VIRUS


PENV_MCFF
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING
600-621



PRECURSOR
MURINE LEUKEMIA VIRUS


PENV_MCFF3
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING
601-622



PRECURSOR
MURINE LEUKEMIA VIRUS




(ISOLATE CI-


PENV_MLVAV
ENV POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
630-651



PRECURSOR


PENV_MLVCB
ENV POLYPROTEIN
CAS-BR-E MURINE LEUKEMIA
625-646



PRECURSOR
VIRUS


PENV_MLVF5
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
639-660



PRECURSOR
VIRUS (ISOLATE 57)


PENV_MLVFF
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
639-660



PRECURSOR
VIRUS (ISOLATE FB29)


PENV_MLVFP
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA
639-660



PRECURSOR
VIRUS (ISOLATE PVC-211)


PENV_MLVHO
ENV POLYPROTEIN
HOMULV MURINE LEUKEMIA
626-647



PRECURSOR
VIRUS (MUS HORTULANUS




VIRUS)


PENV_MLVKI
ENV POLYPROTEIN
KRISTEN MURINE LEUKEMIA
167-188




VIRUS


PENV_MLVMO
ENV POLYPROTEIN
MOLONEY MURINE LEUKEMIA
629-650



PRECURSOR
VIRUS


PENV_MLVRD
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA
624-645



PRECURSOR
VIRUS


PENV_MLVRK
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA
624-645



PRECURSOR
VIRUS (STRAIN KAPLAN)


PENV_MMTVB
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR
643-663




VIRUS (STRAIN BR6)


PENV_MMTVG
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR
643-663




VIRUS (STRAIN GR)


PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
213-235


PENV_MSVFB
ENV POLYPROTEIN
FBJ MURINE OSTEOSARCOMA
170-191




VIRUS


PENV_OMVVS
ENV POLYPROTEIN
OVINE LENTIVIRUS
658-683



PRECURSOR
(STRAIN SA-OMVV)


PENV_RMCFV
ENV POLYPROTEIN
RAUSCHER MINK CELL
603-624



PRECURSOR
FOCUS-INDUCING VIRUS


PENV_RSVP
ENV POLYPROTEIN
ROUS SARCOMA VIRUS
42-69
533-552




(STRAIN PRAGUE C)


PENV_SFV1
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
300-325
710-727
864-887
924-951
957-978


PENV_SFV3L
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS
157-178
304-329
707-724
861-884
921-948
954-975




(TYPE 3/STRAIN LK3)


PENV_SIVA1
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
437-458




VIRUS (AGM155 ISOLATE)


PENV_SIVAG
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
442-463




VIRUS (AGM3 ISOLATE)


PENV_SIVA1
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
421-442




VIRUS (ISOLATE AGM/CLONE




GRI-1)


PENV_SIVAT
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
435-456




VIRUS (TYO-1 ISOLATE)


PENV_SIVGB
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
93-109




VIRUS (ISOLATE GB1)


PENV_SIVM1
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
766-793
803-826




VIRUS (MM142-83 ISOLATE)


PENV_SIVMK
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
139-154
765-792
802-825




VIRUS (K6W ISOLATE)


PENV_SIVML
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
139-154
764-791
801-824




VIRUS (K78 ISOLATE)


PENV_SIVS4
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
769-789
806-829




VIRUS (F236/SMH4 ISOLATE)


PENV_SIVSP
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY
773-793
810-833




VIRUS (BPJ/BC13 ISOLATE)


PENV_SMSAV
P15E PROTEIN
SIMIAN SARCOMA VIRUS
42-63


PENV_SRV1
ENV POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
213-235


PERBA_AVIER
ERBA ONCOGENE PROTEIN
AVIAN ERYTHROBLASTOSIS
227-249




VIRUS (STRAIN ES4)


PETF1_FOWP1
EARLY TRANSCRIPTION
FOWLPOX VIRUS (STRAIN FP-1)
21-41
73-92



FACTOR


PETF1_SFVKA
EARLY TRANSCRIPTION
SHOPE FIBROMA VIRUS
21-41



FACTOR
(STRAIN KASZA)


PETF1_VACCC
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN
21-41



FACTOR
COPENHAGEN)


PETF1_VACCV
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN WR)
21-41



FACTOR


PETF2_VACCC
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN
50-73
101-117
165-187
285-308
558-582



FACTOR 82 KD SUBUNIT
COPENHAGEN)


PETF2_VACCV
EARLY TRANSCRIPTION
VACCINIA VIRUS (STRAIN WR)
48-72



FACTOR 82 KD SUBUNIT


PETF2_VARV
EARLY TRANSCRIPTION
VARIOLA VIRUS
50-73
101-117
165-187
285-308
558-582



FACTOR 82 KD SUBUNIT


PEXON_HSV11
ALKALINE EXONUCLEASE
HERPES SIMPLEX VIRUS
165-180




(TYPE 1/STRAIN 17)


PEXON_HSV2
ALKALINE EXONUCLEASE
HERPES SIMPLEX VIRUS (TYPE 2)
155-170


PEXON_HSVEB
ALKALINE EXONUCLEASE
EQUINE HERPES VIRUS TYPE 1
276-291




(STRAIN AB4P)


PEXON_PRVN3
ALKALINE EXONUCLEASE
PSEUDORABIES VIRUS
36-51




(STRAIN NIA-3)


PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS
28-44
217-262




(STRAIN DUMAS)


PFIB2_ADE40
41 4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
116-133


PFIB2_ADE41
41 4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
116-133


PFIBP_ADE03
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 3
152-173


PFIBP_ADE05
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 5
447-473


PFIBP_ADEB3
FIBER PROTEIN
BOVINE ADENOVIRUS TYPE 3
347-372
775-801




(MASTADENOVIRUS BOS3)


PFIBP_ADEC1
FIBER PROTEIN
CANINE ADENOVIRUS TYPE 1
382-397




(STRAIN GLAXO)


PFIBP_ADEM1
FIBER PROTEIN
MOUSE ADENOVIRUS TYPE 1
191-215
227-252
493-513
548-571
579-599


PGAG_AVEV1
GAG POLYPROTEIN
AVIAN ENDOGENOUS VIRUS EV-1
53-78


PGAG_AVEV2
GAG POLYPROTEIN
AVIAN ENDOGENOUS
2-27




ROUS-ASSOCIATED VIRUS-0


PGAG_AVIMC
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS
53-78




VIRUS MC29


PGAG_AVIMD
GAG POLYPROTEIN
AVIAN MYELOCTYOMATOSIS
53-78




VIRUS HB1


PGAG_AVISU
CORE PROTEIN P19
AVIAN SARCOMA VIRUS
53-78




(STRAIN UR2)


PGAG_AVISY
GAG POLYPROTEIN
AVIAN SARCOMA VIRUS
53-78




(STRAIN Y73)


PGAG_BAEVM
GAG POLYPROTEIN
BABOON ENDOGENOUS VIRUS
397-422




(STRAIN M7)


PGAG_BLVAU
GAG POLYPROTEIN
BOVINE LEUKEMIA VIRUS
212-238




(AUSTRALIAN ISOLATE)


PGAG_BLVJ
GAG POLYPROTEIN
BOVINE LEUKEMIA VIRUS
213-239




(JAPANESE ISOLATE BLV-1)


PGAG_CAEVC
GAG POLYPROTEIN
CAPRINE ARTHRITIS
102-119




ENCEPHALITIS VIRUS (STRAIN




CORK)


PGAG_FUJSV
GAG POLYPROTEIN
FUJINAMI SARCOMA VIRUS
53-78


PGAG_HTL1A
GAG POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
77-94




TYPE 1 (STRAIN ATK)


PGAG_HTL1C
GAG POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
77-94




TYPE 1 (CARIBBEAN ISOLATE)


PGAG_HTL1M
GAG POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
77-94




TYPE 1 (ISOLATE MT-2)


PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (ARV2/SF2




ISOLATE)


PGAG_HV1B1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (BH10 ISOLATE)


PGAG_HV1B5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (BH5 ISOLATE)


PGAG_HV1BR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (BRU ISOLATE)


PGAG_HV1C4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (CDC-451 ISOLATE)


PGAG_HV1EL
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (ELI ISOLATE)


PGAG_HV1H2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (HXB2 ISOLATE)


PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (JH3 ISOLATE)


PGAG_HV1JR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (JRCSF ISOLATE)


PGAG_HV1MA
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
262-285




VIRUS TYPE 1 (MAL ISOLATE)


PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (MN ISOLATE)


PGAG_HV1N5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (NEW YORK-5




ISOLATE)


PGAG_HV1ND
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91
352-373




VIRUS TYPE 1 (NDK ISOLATE)


PGAG_HV1OY
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (OY1 ISOLATE)


PGAG_HV1PV
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (PV22 ISOLATE)


PGAG_HV1RH
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (RF/HAT ISOLATE)


PGAG_HV1U4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (STRAIN




UGANDAN/ISO)


PGAG_HV1W2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (WMJ2 ISOLATE)


PGAG_HV1Z2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY
65-91




VIRUS TYPE 1 (Z2/CDC-Z34




ISOLATE)


PGAG_IPMA
RETROVIRUS-RELATED GAG
MOUSE INTRACISTERNAL
757-772



POLYPROTEIN
A-PARTICLE


PGAG_MMTVB
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR
82-97




VIRUS (STRAIN BR6)


PGAG_MMTVC
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR
82-97




VIRUS (STRAIN C3H)


PGAG_MMTVG
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR
82-97




VIRUS (STRAIN GR)


PGAG_RSVP
GAG POLYPROTEIN
ROUS SARCOMA VIRUS
53-78




(STRAIN PRAGUE C)


PGAG_SCVLA
MAJOR COAT PROTEIN
SACCAROMYCES CEREVISIAE
618-645




VIRUS L-A


PGAG_SFV1
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
85-103


PGAG_SFV3L
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS
83-101




(TYPE 3/STRAIN LK3)


PGAG_SIVA1
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
189-213




VIRUS (AGM155 ISOLATE)


PGAG_SIVAG
GAG POLYPROTEIN
SIMIAN IMMUNODIFICIENCY
193-217




VIRUS (AGM3 ISOLATE)


PGAG_SIVAT
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
189-213




VIRUS (TYO-1 ISOLATE)


PGAG_SIVCZ
GAG POLYPROTEIN
CHIMPANZEE
66-92




IMMUNODEFICIENCY VIRUS




(SIV(CPZ))


PGAG_SIVGB
GAG POLYPROTEIN
SIMIAN IMMUNODIFICIENCY
66-92




VIRUS (ISOLATE GB1)


PGAG_SIVM1
GAG POLYPROTEIN
SIMIAN IMMUNODEFCICENCY




VIRUS (MM142-83 ISOLATE)


PGAG_SMRVH
GAG POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS
286-307




(SMRV-H)


PGLRX_VACCC
POSSIBLE GLUTAREDOXIN
VACCINIA VIRUS (STRAIN
71-87




COPENHAGEN), AND (STRAIN




L-1VP)


PGLRX_VARV
POSSIBLE GLUTAREDOXIN
VARIOLA VIRUS
71-87


PGRAN_GVAS
GRANULIN
AGROTIS SEGETUM GRANULOSIS
208-226




VIRUS


PGRAN_GVTN
GRANULIN
TRICHOPLUSIA NI GRANULOSIS
209-227




VIRUS


PGRFA_VACCC
GROWTH FACTOR
VACCINIA VIRUS (STRAIN
104-124




COPENHAGEN)


PGRFA_VACCV
GROWTH FACTOR
VACCINIA VIRUS (STRAIN WR)
104-123


PGRFA_VARV
GROWTH FACTOR
VARIOLA VIRUS
104-122


PHELI_EBV
PROBABLE HELICASE
EPSTEIN-BARR VIRUS
180-207
338-361
438-464




(STRAIN B95-8)


PHELI_HCMVA
PROBABLE HELICASE
HUMAN CYTOMEGALOVIRUS
397-420
539-560
826-852




(STRAIN AD169)


PHELI_HSV11
PROBABLE HELICASE
HERPES SIMPLEX VIRUS
389-408
628-646




(TYPE 1/STRAIN 17)


PHELI_HSV2H
PROBABLE HELICASE
HERPES SIMPLEX VIRUS
290-309
529-554




(TYPE 2/STRAIN HG52)


PHELI_HSVEB
PROBABLE HELICASE
EQUINE HERPESVIRUS TYPE 1
181-204
243-266
394-413




(STRAIN AB4P)


PHELI_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI
327-350
389-411
658-683




(STRAIN 11)


PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS
165-189
383-402
561-578
761-786




(STRAIN DUMAS)


PHEMA_CDVO
HEMAGGLUTININ-
CANINE DISTEMPER VIRUS
36-53
200-223



NEURAMINIDASE
(STRAIN ONDERSTEPOORT)


PHEMA_CVBF
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS
391-415



PRECURSOR
(STRAIN F15)


PHEMA_CVBLY
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS
391-415



PRECURSOR
(STRAIN LY-138)


PHEMA_CVBM
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS
391-415



PRECURSOR
(STRAIN MEBUS)


PHEMA_CVBQ
HEMAGGLUTININ-ESTERASE
BOVINE CORONAVIRUS (STRAIN
391-415



PRECURSOR
QUEBEC), AND (STRAIN L9)


PHEMA_CVHOC
HEMAGGLUTININ-ESTERASE
HUMAN CORONAVIRUS
391-415



PRECURSOR
(STRAIN OC43)


PHEMA_CVMA5
HEMAGGLUTININ-ESTERASE
MURINE CORONAVIRUS MHV
402-423



PRECURSOR
(STRAIN A59)


PHEMA_CVMS
HEMAGGLUTININ-ESTERASE
MURINE CORONAVIRUS MHZ
403-418



PRECURSOR
(STRAIN S)


PHEMA_IAAIC
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/AICHI/2/68)


PHEMA_IABAN
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/BANGKOK/1/79)


PHEMA_IABUD
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/BUDGERIGAR/HOKKAIDO/1/77)


PHEMA_IACKA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/CHICKEN/ALABAMA/1/75)


PHEMA_IACKG
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
81-101
231-247
316-333



PRECURSOR
A/CHICKEN/GERMANY/N/49)


PHEMA_ICAKP
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
302-319



PRECURSOR
A/CHICKEN/PENNSYLVANIA/1/83)


PHEMA_IACKQ
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
302-319



PRECURSOR
A/CHICKEN/PENNSYLVANIA/




1370/83)


PHEMA_IACKS
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
319-336



PRECURSOR
A/CHICKEN/SCOTLAND/59)


PHEMA_IACKV
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/CHICKEN/VICTORIA/1/85)


PHEMA_IADA1
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/DUCK/ALBERTA/28/76)


PHEMA_IADA3
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/DUCK/ALBERTA/78/76)


PHEMA_IADCZ
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/DUCK/CZECHOSLOVAKIA/56)


PHEMA_IADE1
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
266-287
319-336



PRECURSOR
A/DUCK/ENGLAND/1/56)


PHEMA_IADH1
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
306-323



PRECURSOR
A/DUCK/HOKKAIDO/5/77)


PHEMA_IADH2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/DUCK/HOKKAIDO/8/80)


PHEMA_IADH3
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/DUCK/HOKKAIDO/33/80)


PHEMA_IADH4
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/DUCK/HOKKAIDO/7/82)


PHEMA_IADH5
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
215-237



PRECURSOR
A/DUCK/HOKKAIDO/21/82)


PHEMA_IADH6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/DUCK/HOKKAIDO/9/85)


PHEMA_IADH7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/DUCK/HOKKAIDO/10/85)


PHEMA_IADM2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/DUCK/MEMPHIS/928/74)


PHEMA_IADMA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
28-50
81-101



PRECURSOR
A/DUCK/MANITOBA/1/53)


PHEMA_IADNZ
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/DUCK/NEW ZEALAND/31/76)


PHEMA_IADU3
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/DUCK/UKRAINE/1/63)


PHEMA_IAEN6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323




A/ENGLAND/878/69)


PHEMA_IAEN7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/ENGLAND/321/77)


PHEMA_IAFPR
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/FOWL PLAGUE VIRUS/




ROSTOCK/34)


PHEMA_IAGRE
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/GREY TEAL/AUSTRALIA/2/79)


PHEMA_IAGU2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/GULL/MARYLAND/704/77)


PHEMA_IAGUA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
319-336



PRECURSOR
A/GULL/ASTRAKHAN/227/84)


PHEMA_IAHAL
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
321-338



PRECURSOR
A/EQUINE/ALGIERS/72)


PHEMA_IAHC6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/EQUINE/CAMBRIDGE/1/63)


PHEMA_IAHC7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/EQUINE/CAMBRIDGE/1/73)


PHEMA_IAHCD
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/EQUINE/C DETROIT/1/64)


PHEMA_IAHDE
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/EQUINE/DETROIT/1/64)


PHEMA_IAHFO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338



PRECURSOR
A/EQUINE/FONTAINEBLEAU/76)


PHEMA_IAHK6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
321-338



PRECURSOR
A/EQUINE/KENTUCKY/2/86)


PHEMA_IAHK7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338



PRECURSOR
A/EQUINE/KENTUCKY/1/87)


PHEMA_IAHLE
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/EQUINE/LEXINGTON/1/66)


PHEMA_IAHLO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/EQUINE/LONDON/1416/73)


PHEMA_IAHMI
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338



PRECURSOR
A/EQUINE/MIAMI/1/63)


PHEMA_IAHNM
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338



PRECURSOR
A/EQUINE/NEW MARKET/76)


PHEMA_IAHNN
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
315-332



PRECURSOR
A/EQUINE/NEW MARKET/1/77)


PHEMA_IAHPR
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
315-332



PRECURSOR
A/EQUINE/PRAGUE/1/56)


PHEMA_IAHRO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338



PRECURSOR
A/EQUINE/ROMANIA/80)


PHEMA_IAHSA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338



PRECURSOR
A/EQUINE/SANTIAGO/1/85)


PHEMA_IAHSP
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/EQUINE/SAO PAULO/1/76)


PHEMA_IAHSW
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/EQUINE/SWITZERLAND/137/72)


PHEMA_IAHTE
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338



PRECURSOR
A/EQUINE/TENNESSEE/5/86)


PHEMA_IAHTO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338



PRECURSOR
A/EQUINE/TOKYO/71)


PHEMA_IAHUR
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
236-252
321-338



PRECURSOR
A/EQUINE/URUGUAY/1/63)


PHEMA_IAJAP
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
317-334



PRECURSOR
A/JAPAN/305/57)


PHEMA_IAMAA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
197-223
319-336



PRECURSOR
A/MALLARD/ASTRAKHAN/244/82)


PHEMA_IAMAB
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
202-228
324-341



PRECURSOR
A/MALLARD/ASTRAKHAN/263/82)


PHEMA_IAMAO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/MALLARD/NEW YORK/6874/78)


PHEMA_IAME1
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/MEMPHIS/1/71)


PHEMA_IAME2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/MEMPHIS/102/72)


PHEMA_IAME6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/MEMPHIS/6/86)


PHEMA_IAMIN
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
85-101
231-247
316-333



PRECURSOR
A/MINK/SWEDEN/84)


PHEMA_IANT6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/NT/60/68)


PHEMA_IAPIL
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/PILOT WHALE/MAINE/328/84)


PHEMA_IAQU7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/QU/T/70)


PHEMA_IARUD
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/RUDDY TURNSTONE/




NEW JERSEY/47)


PHEMA_IASE2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
320-337



PRECURSOR
A/SEAL/MASSACHUSETTS/133/82)


PHEMA_IASH2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
234-250
321-338



PRECURSOR
A/SHEARWATER/AUSTRALIA/72)


PHEMA_IASTA
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246
315-332



PRECURSOR
A/STARLING/VICTORIA/5156/85)


PHEMA_IATKM
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
33-55
320-337



PRECURSOR
A/TURKEY/MINNESOTA/833/80)


PHEMA_IATKO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
233-249



PRECURSOR
A/TURKEY/ONTARIO/7732/66)


PHEMA_IATKR
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
230-246



PRECURSOR
A/TURKEY/OREGON/71)


PHEMA_IATKW
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
229-245



PRECURSOR
A/TURKEY/WISCONSIN/1/66)


PHEMA_IAUDO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339
380-397



PRECURSOR
A/UDORN/307/72)


PHEMA_IAVI7
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
38-60
323-340



PRECURSOR
A/VICTORIA/3/75)


PHEMA_IAX31
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59



PRECURSOR
X-31)


PHEMA_IAZCO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/SWINE/COLORADO/1/77)


PHEMA_IAZH2
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/SWINE/HONG KONG/81/78)


PHEMA_IAZH3
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
21-43
306-323



PRECURSOR
A/SWINE/HONG KONG/126/82)


PHEMA_IAZUK
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN
37-59
322-339



PRECURSOR
A/SWINE/UKKEL/1/84)


PHEMA_INBAA
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
115-131
295-310



PRECURSOR
B/ANN ARBOR/1/86)


PHEMA_INBBE
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
303-318



PRECURSOR
B/BEIJING/1/87)


PHEMA_INBBO
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
293-308



PRECURSOR
B/BONN/43)


PHEMA_INBEN
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
301-316



PRECURSOR
B/ENGLAND/222/82)


PHEMA_INBFU
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
108-124
286-301




B/FUKUOKA/80/81)


PHEMA_INBGL
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
119-135
296-311



PRECURSOR
B/GL/54)


PHEMA_INBHK
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
293-308



PRECURSOR
B/HONG KONG/8/73)


PHEMA_INBIB
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
108-124
288-303




B/IBARAKI/2/85)


PHEMA_INBID
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
120-136
299-314



PRECURSOR
B/ID/86)


PHEMA_INBLE
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
302-317



PRECURSOR
B/LEE/40)


PHEMA_INBMD
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
113-129
292-307



PRECURSOR
B/MARYLAND/59)


PHEMA_INBME
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
296-311



PRECURSOR
B/MEMPHIS/6/86)


PHEMA_INBNA
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
108-124
288-303




B/NAGASAKI/1/87)


PHEMA_INBOR
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
301-316



PRECURSOR
B/OREGON/5/80)


PHEMA_INBSI
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
301-316



PRECURSOR
B/SINGAPORE/222/79)


PHEMA_INBSJ
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
119-135
298-313



PRECURSOR
B/SINGAPORE/64)


PHEMA_INBUS
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
294-309



PRECURSOR
B/USSR/100/83)


PHEMA_INBVI
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
116-132
296-311



PRECURSOR
B/VICTORIA/3/85)


PHEMA_INBVK
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN
123-139
303-318



PRECURSOR
B/VICTORIA/2/87)


PHEMA_INBYB
HEMAGGLUTINI
INFLUENZA B VIRUS (STRAIN
108-124
286-301




B/YAMAGATA/16/88)


PHEMA_INCCA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
442-466



PRECURSOR
C/CALIFORNIA/78)


PHEMA_INCEN
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454



PRECURSOR
C/ENGLAND/892/83)


PHEMA_INCGL
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454



PRECURSOR
C/GREAT LAKES/1167/54)


PHEMA_INCHY
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
429-453




C/HYOGO/1/83)


PHEMA_INCJH
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
443-467



PRECURSOR
C/JOHANNESBURG/1/66)


PHEMA_INCKY
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
429-453




C/KYOTO/41/82)


PHEMA_INCMI
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
429-453



PRECURSOR
C/MISSISSIPPI/80)


PHEMA_INCNA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
429-453




C/NARA/82)


PHEMA_INCP1
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454



PRECURSOR
C/PIG/BEIJING/10/81)


PHEMA_INCP2
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454



PRECURSOR
C/PIG/BEIJING/115/81)


PHEMA_INCP3
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454



PRECURSOR
C/PIG/BEIJING/439/82)


PHEMA_INCTA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454



PRECURSOR
C/TAYLOR/1233/47)


PHEMA_INCYA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN
430-454



PRECURSOR
C/YAMAGATA/10/81)


PHEMA_MUMP1
HEMAGGLUTININ-
MUMPS VIRUS (STRAIN SBL-1)
101-125
133-148
225-246
367-394
397-417



NEURAMINIDASE


PHEMA_MUMPM
HEMAGGLUTININ-
MUMPS VIRUS (STRAIN
101-125
133-148
225-246
367-394
397-417



NEURAMINIDASE
MIYAHARA VACCINE)


PHEMA_MUMPR
HEMAGGLUTININ-
MUMPS VIRUS (STRAIN RW)
101-125
133-148
225-246
367-394
397-417



NEURAMINIDASE


PHEMA_MUMPS
HEMAGGLUTININ-
MUMPS VIRUS (STRAIN SBL)
101-125
133-148



NEURAMINIDASE


PHEMA_NDVA
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110



NEURAMINIDASE
(STRAIN AUSTRALIA-




VICTORIA/32)


PHEMA_NDVB
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110



NEURAMINIDASE
(STRAIN BEAUDETTE C/45)


PHEMA_NDVD
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110



NEURAMINIDASE
(STRAIN D26/76)


PHEMA_NDVH4
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110



NEURAMINIDASE
(STRAIN B1-HITCHNER/47)


PHEMA_NDVI
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110



NEURAMINIDASE
(STRAIN ITALIEN/45)


PHEMA_NDVM
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110



NEURAMINIDASE
(STRAIN MIYADERA/51)


PHEMA_NDVQ
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110



NEURAMINIDASE
(STRAIN QUEENSLAND/66)


PHEMA_NDVTG
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110



NEURAMINIDASE
(STRAIN TEXAS G B/48)


PHEMA_NDVU
HEMAGGLUTININ-
NEWCASTLE DISEASE VIRUS
93-110



NEURAMINIDASE
(STRAIN ULSTER/67)


PHEMA_PHODV
HEMAGGLUTININ-
PHOCINE DISTEMPER VIRUS
36-58
213-234
493-513



NEURAMINIDASE


PHEMA_PI1HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 1 VIRUS
29-53
322-342
345-360
486-503



NEURAMINIDASE
(STRAIN WASHINGTON/1957)


PHEMA_PI2H
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 2 VIRUS
13-40
65-88
118-136



NEURAMINIDASE
(PIV-2)


PHEMA_PI2HT
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 2 VIRUS
13-40
65-88
118-136



NEURAMINIDASE
(STRAIN TOSHIBA)


PHEMA_PI3B
HEMAGGLUTININ-
BOVINE PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340



NEURAMINIDASE


PHEMA_PI3H4
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340



NEURAMINIDASE
(STRAIN N1H 47885)


PHEMA_PI3HA
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340



NEURAMINIDASE
(STAIN AUS/124854/74)


PHEMA_PI3HT
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340



NEURAMINIDASE
(STRAIN TEX/545/80)


PHEMA_PI3HU
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340



NEURAMINIDASE
(STRAIN TEX/9305/82)


PHEMA_PI3HV
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340



NEURAMINIDASE
(STRAIN TEX/12677/83)


PHEMA_PI3HW
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340



NEURAMINIDASE
(STRAIN WASH/641/79)


PHEMA_PI3HX
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 3 VIRUS
111-128
272-299
324-340



NEURAMINIDASE
(STRAIN WASH/1511/73)


PHEMA_PI4HA
HEMAGGLUTININ-
HUMAN PARAINFLUENZA 4A
50-67



NEURAMINIDASE
VIRUS (STRAIN TOSHIBA)


PHEMA_RINDK
HEMAGGLUTININ-
RINDERPEST VIRUS (STRAIN
368-383



NEURAMINIDASE
KABETE O)


PHEMA_RINDL
HEMAGGLUTININ-
RINDERPEST VIRUS (STRAIN L)
4-30



NEURAMINIDASE


PHEMA_SEND5
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN Z/HOST
322-342



NEURAMINIDASE
MUTANTS)


PHEMA_SENDF
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN FUSHIMI)
322-342



NEURAMINIDASE


PHEMA_SENDH
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN HARRIS)
322-342



NEURAMINIDASE


PHEMA_SENDJ
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN HVJ)
322-342



NEURAMINIDASE


PHEMA_SENDZ
HEMAGGLUTININ-
SENDAI VIRUS (STRAIN Z)
322-342



NEURAMINIDASE


PHEMA_SV41
HEMAGGLUTININ-
SIMIAN VIRUS 41
55-73
85-102
107-132



NEURAMINIDASE


PHEMA_SV5
HEMAGGLUTININ-
SIMIAN VIRUS 5 (STRAIN W3)
7-28
84-101
379-400



NEURAMINIDASE


PHEMA_SV5CM
HEMAGGLUTININ-
SIMIAN VIRUS 5 (ISOLATE
7-28
84-101
379-400



NEURAMINIDASE
CANINE/CP1−)


PHEMA_SV5CP
HEMAGGLUTININ-
SIMIAN VIRUS 5 (ISOLATE
7-28
84-101
379-400



NEURAMINIDASE
CANINE/CP1+)


PHEMA_SV5LN
HEMAGGLUTININ-

7-28
84-101
379-400



NEURAMINIDASE


PHEMA_VACCC
HEMAGGLUTININ
VACCINIA VIRUS (STRAIN
173-192



PRECURSOR
COPENHAGEN)


PHEMA_VACCI
HEMAGGLUTININ
VACCINIA VIRUS (STRAIN IHD-J)
173-192



PRECURSOR


PHEMA_VACCT
HEMAGGLUTININ
VACCINIA VIRUS (STRAIN TIAN
173-192



PRECURSOR
TAN)


PHEMA_VACCV
HEMAGGLUTININ
VACCINIA VIRUS (STRAIN WR)
173-192



PRECURSOR


PHEMA_VARV
HEMAGGLUTININ
VARIOLA VIRUS
175-194



PRECURSOR


PHEX8_ADE02
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 2
38-61
119-140



PROTEIN PRECURSOR


PHEX8_ADE03
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 3
27-48



PROTEIN PRECURSOR


PHEX8_ADE05
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 5
38-61
119-140



PROTEIN PRECURSOR


PHEX8_ADE41
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 41
38-61
128-146



PROTEIN PRECURSOR


PHEX8_ADEM1
HEXON-ASSOCIATED
MOUSE ADENOVIRUS TYPE 1
36-52



PROTEIN PRECURSOR


PHEX9_ADE07
HEXON-ASSOCIATED
HUMAN ADENOVIRUS TYPE 7
92-117



PROTEIN
AND 3


PHEX9_ADEC2
HEXON-ASSOCIATED
CANINE ADENOVIRUS TYPE 2
52-77



PROTEIN


PHEX9_ADENT
HEXON-ASSOCIATED
TUPAIA ADENOVIRUS
60-82



PROTEIN


PHRG_COWPX
HOST RANGE PROTEIN
COWPOX VIRUS
517-533
558-583
609-636


PI177_ASFB7
LATE PROTEIN I177L
AFRICAN SWINE FEVER VIRUS
68-83




(STRAIN BA71V)


PI196_ASFB7
LATE PROTEIN I196L
AFRICAN SWINE FEVER VIRUS
169-190




(STRAIN BA71V)


PI226_ASFB7
LATE PROTEIN I226R
AFRICAN SWINE FEVER VIRUS
60-77




(STRAIN BA71V)


PI329_ASFB7
LATE PROTEIN I329L
AFRICAN SWINE FEVER VIRUS
239-260



PRECURSOR
(STRAIN BA71V)


PI78_ASFB7
EARLY PROTEIN I78R
AFRICAN SWINE FEVER VIRUS
2-29




(STRAIN BA71V)


PIBMP_SOCMV
INCLUSION BODY MATRIX
SOYBEAN CHLOROTIC MOTTLE
97-119



PROTEIN
VIRUS


PIC18_EBV
PROBABLE PROCESSING AND
EPSTEIN-BARR VIRUS
101-123
131-153
759-777



TRANSPORT PROTEIN
(STRAIN B95-8)


PIC18_HCMVA
PROBABLE PROCESSING AND
HUMAN CYTOMEGALOVIRUS
156-176
202-222



TRANSPORT PROTEIN
(STRAIN AD169)


PIC18_HSV11
PROCESSING AND
HERPEX SIMPLEX VIRUS
8-29
45-61
122-143
751-768



TRANSPORT PROTEIN
(TYPE 1/STRAIN 17)


PIC18_HSV1A
PROCESSING AND
HERPES SIMPLEX VIRUS
8-29
45-61
122-143
751-768



TRANSPORT PROTEIN
(TYPE 1/STRAIN ANGELOTTI)


PIC18_HSV1F
PROCESSING AND
HERPES SIMPLEX VIRUS
8-29
122-143
746-763



TRANSPORT PROTEIN
(TYPE 1/STRAIN F)


PIC18_HSVB2
PROBABLE PROCESSING AND
BOVINE HERPESVIRUS TYPE 2
12-37
130-151



TRANSPORT PROTEIN
(STRAIN BMV)


PIC18_HSVEB
PROBABLE PROCESSING AND
EQUINE HERPESVIRUS TYPE 1
37-56
129-144
732-755



TRANSPORT PROTEIN


PIC18_HSVSA
PROBABLE PROCESSING AND
HERPESVIRUS SAIMIRI
27-49
51-78
647-672



TRANSPORT PROTEIN
(STRAIN 11)


PIC18_MCMVS
PROBABLE PROCESSING AND
MURINE CYTOMEGALOVIRUS
126-144
202-229
386-411



TRANSPORT PROTEIN
(STRAIN SMITH)


PIC18_PRVIF
PROBABLE PROCESSING AND
PSEUDORABIES VIRUS (STRAIN
285-307
698-718



TRANSPORT PROTEIN
INDIANA-FUNKHAUSER/BECKER)


PIC18_VZVD
PROBABLE PROCESSING AND
VARICELLA-ZOSTER VIRUS
69-88
619-639
725-744



TRANSPORT PROTEIN
(STRAIN DUMAS)


PICP0_HSV11
IMMEDIATE-EARLY PROTEIN
HERPES SIMPLEX VIRUS
668-684




(TYPE 1/STRAIN 17)


PICP0_HSV2H
VMW118 PROTEIN
HERPES SIMPLEX VIRUS
713-729




(TYPE 2/STRAIN HG52)


PICP0_PRVIF
EARLY PROTEIN 0
PSEUDORABIES VIRUS (STRAIN
82-102




INDIANA-FUNKHAUSER/BECKER)


PICP3_HSV1F
INFECTED CELL PROTEIN
HERPES SIMPLEX VIRUS
211-227




(TYPE 1/STRAIN F)


PICP4_HSV11
TRANS-ACTING
HERPES SIMPLEX VIRUS
81-98
621-637



TRANSCRIPTIONAL PROTEIN
(TYPE 1/STRAIN 17)


PICP4_HSVEB
TRANS-ACTING
EQUINE HERPESVIRUS TYPE 1
708-725
736-759



TRANSCRIPTIONAL PROTEIN
(STRAIN AB4P)


PICP4_HSVEK
TRANS-ACTING
EQUINE HERPESVIRUS TYPE 1
708-725
736-759



TRANSCRIPTIONAL PROTEIN
(STRAIN KENTUCKY A)


PICP4_HSVMG
TRANS-ACTING
MAREK'S DISEASE HERPESVIRUS
488-506
585-611
1202-1218



TRANSACTIVATOR PROTEIN
(STRAIN GA)


PICP4_VZVD
TRANS-ACTING
VARICELLA-ZOSTER VIRUS
547-563



TRANSCRIPTIONAL PROTEIN
(STRAIN DUMAS)


PIE18_PRVIF
IMMEDIATE-EARLY
PSEUDORABIES VIRUS (STRAIN
731-748



PROTEIN IE180
INDIANA-FUNKHAUSER/BECKER)


PIE18_PRVKA
IMMEDIATE-EARLY
PSEUDORABIES VIRUS
720-737



PROTEIN IE180
(STRAIN KAPLAN)


PIE63_HCMVA
TRANSCRIPTIONAL
HUMAN CYTOMEGALOVIRUS
286-304
364-383



REGULATOR IE63 HOMOLOG (
(STRAIN AD169)


PIE63_HSV1I
TRANSCRIPTIONAL
HERPES SIMPLEX VIRUS
378-394



REGULATOR IE63
(TYPE 1/STRAIN 17)


PIE63_HSV2H
TRANSCRIPTIONAL
HERPES SIMPLEX VIRUS
378-394



REGULATOR IE63
(TYPE 2/STRAIN HG52)


PIE63_HSVEB
TRANSCRIPTIONAL
EQUINE HERPESVIRUS TYPE 1
337-353
385-406



REGULATOR IE63 HOMOLOG
(STRAIN AB4P)


PIE63_HSVSA
52 KD IMMEDIATE-EARLY
HERPESVIRUS SAIMIRI
301-326



PHOSPHOPROTEIN
(STRAIN 11)


PIE68_HSV11
IMMEDIATE-EARLY
HERPES SIMPLEX VIRUS
189-205



PROTEIN IE68
(TYPE 1/STRAIN 17)


PIE68_HSVE4
IMMEDIATE-EARLY
EQUINE HERPESVIRUS TYPE 4
81-104



PROTEIN IE68


PIE68_HSVEB
IMMEDIATE-EARLY PROTEIN
EQUINE HERPESVIRUS TYPE 1
93-116


PIE68_PRVKA
IMMEDIATE-EARLY PROTEIN
PSEUDORABIES VIRUS
85-108




(STRAIN KAPLAN)


PIE68_VZVD
GENE 63/70 PROTEIN
VARICELLA-ZOSTER VIRUS
57-78




(STRAIN DUMAS)


PIR14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
117-137




(STRAIN AD169)


PKERB_AVIER
ERBB TYROSINE KINASE
AVIAN ERYTHROBLASTOSIS
64-84
297-324



TRANSFORMING PROTEIN
VIRUS


PKFES_FSVGA
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
73-88



TRANSFORMING PROT
(STRAIN GARDNER-ARNSTEIN)


PKFES_FSVST
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
2-22



TRANSFORMING PROT
(STRAIN SNYDER-THEILEN)


PKFGR_FSVGR
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS
269-288



TRANSFORMING PROT
(STRAIN GARDNER-RASHEED)


PKFMS_FSVMD
FMS TYROSINE KINASE
FELINE SARCOMA VIRUS
141-159
243-263
434-450
548-563
781-801
856-877



TRANSFORMING PROTEIN
(STRAIN MCDONOUGH)


PKFPS_AVISP
TYROSINE-PROTEIN KINASE
AVIAN SARCOMA VIRUS
247-274



TRANSFORMING PROT
(STRAIN PRC11)


PKFPS_FUJSV
TYROSINE-PROTEIN KINASE
FUJINAMI SARCOMA VIRUS
259-275
346-370
400-420
587-614



TRANSFORMING PROT


PKITH_ASFB7
THYMIDINE KINASE
AFRICAN SWINE FEVER VIRUS
18-41




(STRAIN BA71V)


PKITH_EBV
THYMIDINE KINASE
EPSTEIN-BARR VIRUS
403-418
428-446




(STRAIN B95-8)


PKITH_FLDV
THYMIDINE KINASE
FISH LYMPHOCYSTIS DISEASE
96-117
252-275




VIRUS


PKITH_HSV11
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249




(TYPE 1/STRAIN 17)


PKITH_HSV1C
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249




(TYPE 1/STRAIN CL101)


PKITH_HSV1E
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249




(TYPE 1/STRAIN HFEM)


PKITH_HSV1K
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249




(TYPE 1/STRAIN KOS)


PKITH_HSV1S
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
223-249




(TYPE 1/STRAIN SC16)


PKITH_HSV23
THYMIDINE KINASE
HERPES SIMPLEX VIRUS
224-250
333-348




(TYPE 2/STRAIN 333)


PKITH_HSVB6
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 1
193-219
280-304




(STRAIN 6660)


PKITH_HSVBH
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 2
180-202




(STRAIN BHM-1)


PKITH_HSVBM
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 3
381-399
609-633




(STRAIN WC11)


PKITH_HSVBQ
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 1 2
194-220
282-306




(STRAIN Q3932)


PKITH_HSVE4
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 4
174-193
261-284




(STRAIN 1942)


PKITH_HSVEB
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 1
18-33
174-193
274-298




(STRAIN AB4P) AND




(ISOLATE HVS25A)


PKITH_HSVF
THYMIDINE KINASE
FELINE HERPESVIRUS
171-189




(FELID HERPESVIRUS 1)


PKITH_HSVI1
THYMIDINE KINASE
ICTALURID HERPESVIRUS 1
14-32


PKITH_HSVMR
THYMIDINE KINASE
MARMOSET HERPESVIRUS
189-215


PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI
208-232




(STRAIN 11)


PKITH_ILTVT
THYMIDINE KINASE
INFECTIOUS
183-202
208-234




LARYNGOTRACHEITIS VIRUS




(STRAIN THORNE V882)


PKITH_VZV4
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS
197-216




(ACYCLOVIR-RESISTANT




STRAIN 40A2)


PKITH_VZV7
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS
197-216




(ACYCLOVIR-RESISTANT




STRAIN 7-1-3)


PKITH_VZVD
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS
197-216




(STRAIN DUMAS)


PKITH_VZVG
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS
197-216




(ACYCLOVIR-RESISTANT




STRAIN GK)


PKITH_VZVW
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS (VZV)
197-216


PKKIT_FSVHZ
KIT TYROSINE KINASE
FELINE SARCOMA VIRUS
192-214
276-297



TRANSFORMING PROTEIN
(STRAIN HARDY-ZUCKERMAN 4)


PKR15_HSVI1
GENE 15 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
151-167
358-374


PKR16_HSVI1
GENE 16 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
197-217
286-311


PKR1_HSVI1
SERINE/THREONINE-PROTEIN
HERPES SIMPLEX VIRUS
280-296
358-377



KINASE
(TYPE 1/STRAIN 17)


PKR1_HSV2
SERINE/THREONINE-PROTEIN
HERPES SIMPLEX VIRUS
276-296
358-377



KINASE
(TYPE 2)


PKR1_HSVEB
SERINE/THREONINE-PROTEIN
EQUINE HERPESVIRUS TYPE 1
289-307



KINASE
(STRAIN AB4P)


PKR1_HSVEK
SERINE/THREONINE-PROTEIN
EQUINE HERPESVIRUS TYPE 1
289-307



KINASE
(STRAIN KENTUCKY A)


PKR1_VZVD
SERINE/THREONINE-PROTEIN
VARICELLA-ZOSTER VIRUS
179-197



KINASE
(STRAIN DUMAS)


PKR2_EBV
PROBABLE
EPSTEIN-BARR VIRUS
196-211
313-338



SERINE/THREONINE-
(STRAIN B95-8)



PROTEIN KINASE


PKR2_HSVI1
PROBABLE
HERPES SIMPLEX VIRUS
247-267



SERINE/THREONINE-
(TYPE 1/STRAIN 17)



PROTEIN KINASE


PKR2_HSVEB
PROBABLE
EQUINE HERPESVIRUS TYPE 1
317-339
441-462



SERINE/THREONINE-
(STRAIN AB4P)



PROTEIN KINASE


PKR2_PRVN3
SERINE/THREONINE-
PSEUDORABIES VIRUS
164-185
282-305



PROTEIN KINASE 2
(STRAIN NIA-3)


PKR2_VZVD
PROBABLE
VARICELLA-ZOSTER VIRUS
116-131
226-247
354-373



SERINE/THREONINE-
(STRAIN DUMAS)



PROTEIN KINASE


PKR73_HSVI1
GENE 73 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
841-858


PKR74_HSVI1
GENE 74 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
359-380
548-575


PKRB1_VACCC
30 KD PROTEIN KINASE
VACCINIA VIRUS
199-214



HOMOLOG
(STRAIN COPENHAGEN)


PKRB1_VACCV
30 KD PROTEIN KINASE
VACCINIA VIRUS
199-214



HOMOLOG
(STRAIN WR)


PKRB1_VARV
30 KD PROTEIN KINASE
VARIOLA VIRUS
199-214



HOMOLOG


PKRF1_SFVKA
POSSIBLE PROTEIN KINASE
SHOPE FIBROMA VIRUS
83-98



C20
(STRAIN KASZA)


PKRF1_VACCC
POSSIBLE PROTEIN KINASE
VACCINIA VIRUS
85-100



F10
(STRAIN COPENHAGEN)


PKRF1_VACCP
POSSIBLE PROTEIN KINASE
VACCINIA VIRUS
52-67



F10
(STRAIN L-IVP)


PKRF1_VARV
POSSIBLE PROTEIN KINASE
VARIOLA VIRUS
85-100



F10


PKROS_AVISU
ROS TYR KINASE
AVIAN SARCOMA VIRUS
6-29
202-223
284-305



TRANSFORMING PROTEIN
(STRAIN UR2)


PKRYK_AVIR3
TYR-PROTEIN KINASE
AVIAN RETROVIRUS RPL30
154-172
221-241



TRANSFORMING PROTEIN R


PKSEA_AVIET
TYR-PROTEIN KINASE
AVIAN ERYTHROBLASTOSIS
158-177



TRANSFORMING PROTEIN SE
VIRUS (STRAIN S13)


PKSRC_AVIS2
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377



TRANSFORMING PROTEIN SR
(STRAIN PR2257)


PKSRC_AVISR
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377



TRANSFORMING PROTEIN SR
(STRAIN RASV1441)


PKSRC_AVISS
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377



TRANSFORMING PROTEIN SR
(STRAIN S1)


PKSRC_AVIST
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377



TRANSFORMING PROTEIN SR
(STRAIN S2)


PKSRC_RSVH1
TYR-PROTEIN KINASE
ROUS SARCOMA VIRUS
361-377



TRANSFORMING PROTEIN SR
(STRAIN H-19)


PKSRC_RSVP
TYR-PROTEIN KINASE
ROUS SARCOMA VIRUS
361-377



TRANSFORMING PROTEIN SR
(STRAIN PRAGUE C)


PKSRC_RSVPA
TYR-PROTEIN KINASE
ROUS SARCOMA VIRUS
358-374



TRANSFORMING PROTEIN SR
(STRAIN PA101T)


PKSRC_RSVSR
TYR-PROTEIN KINASE
ROUS SARCOMA VIRUS
361-377



TRANSFORMING PROTEIN SR
(STRAIN SCHMIDT-RUPPIN)


PKYES_AVISY
TYR-PROTEIN KINASE
AVIAN SARCOMA VIRUS
361-377



TRANSFORMING PROTEIN Y
(STRAIN Y73)


PL100_ADE02
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
489-511


PL100_ADE05
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
489-511


PL100_ADE41
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
458-480


PL52_ADE02
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
237-259


PL52_ADE05
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
237-259


PLEC1_FOWPM
HEPATIC LECTIN HOMOLOG
FOWLPOX VIRUS (ISOLATE
2-26




HP-438(MUNICH))


PLMP1_EBV
LATENT MEMBRANE
EPSTEIN-BARR VIRUS
20-43
79-100



PROTEIN 1
(STRAIN B95-8)


PLMP1_EBVC
LATENT MEMBRANE
EPSTEIN-BARR VIRUS
20-43
79-100



PROTEIN 1
(STRAIN B95-8)


PLMP1_EBVR
LATENT MEMBRANE
EPSTEIN-BARR VIRUS
20-43
79-100



PROTEIN 1
(STRAIN B95-8)


PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS
181-196
204-226
267-288
291-315
346-369
390-410




(STRAIN B95-8)


PMCEL_SFVKA
MRNA CAPPING ENZYME,
SHOPE FIBROMA VIRUS
244-260
556-578
679-699



LARGE SUBUNIT
(STRAIN KASZA)


PMCEL_VACCC
MRNA CAPPING ENZYME,
VACCINIA VIRUS
81-102
265-282
289-312
687-707



LARGE SUBUNIT
(STRAIN COPENHAGEN)


PMCEL_VACCV
MRNA CAPPING ENZYME,
VACCINIA VIRUS (STRAIN WR)
81-102
265-282
289-312
687-707



LARGE SUBUNIT


PMCEL_VARV
MRNA CAPPING ENZYME,
VARIOLA VIRUS
81-102
265-282
289-312
687-707



LARGE SUBUNIT


PMCE_ASFB7
MRNA CAPPING ENZYME
AFRICAN SWINE FEVER VIRUS
217-243




(STRAIN BA71V)


PMCE_REOVD
MRNA CAPPING ENZYME
REOVIRUS (TYPE 3/STRAIN
358-384
567-588
714-741




DEARING)


PMOVP_CGMVS
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE
157-172




MOSAIC VIRUS (WATERMELON




STRAIN S)


PMOVP_CGMVW
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE
157-172




MOSAIC VIRUS (WATERMELON




STRAIN)


PMOVP_ORSV
MOVEMENT PROTEIN
ODONTOGLOSSUM RINGSPOT
49-74
178-205




VIRUS


PMOVP_PPMVS
MOVEMENT PROTEIN
PEPPER MILD MOTTLE VIRUS
25-50
186-201




(STRAIN SPAIN)


PMOVP_TMGMV
MOVEMENT PROTEIN
TOBACCO MILD GREEN MOSAIC
186-201




VIRUS (TMV STRAIN U2)


PMOVP_TMVCO
MOVEMENT PROTEIN
TOBACCO MOSAIC VIRUS
88-107
156-171




(STRAIN COWPEA)


PMTC1_CHVN1
MODIFICATION
CHOLRELLA VIRUS NC-1A
129-156



METHYLASE CVIBI


PMTC2_CHVP1
MODIFICATION
PARAMECIUM BURSARIA
72-94



METHYLASE CVIAII
CHLORELLA VIRUS 1 (


PMTC3_CHVN1
MODIFICATION
CHLORELLA VIRUS NC-1A
177-192
265-286



METHYLASE CVIBIII


PMYBE_AVILE
P135-GAG-MYB-ETS
AVIAN LEUKEMIA VIRUS E26
104-124



TRANSFORMING PROTEIN (


PMYB_AVIMB
MYB TRANFORMING PROTEIN
AVIAN MYELOBLASTOSIS VIRUS
218-238
301-326


PNCAP_AINOV
NUCLEOCAPSID PROTEIN
AINO VIRUS
159-181


PNCAP_BUNLC
NUCLEOCAPSID PROTEIN
BUNYAVIRUS LA CROSSE
84-99


PNCAP_BUNSH
NUCLEOCAPSID PROTEIN
BUNYAVIRUS SNOWSHOE HARE
84-99


PNCAP_CDVO
NUCLEOCAPSID PROTEIN
CANINE DISTEMPER VIRUS
31-50




(STRAIN ONDERSTEPOORT)


PNCAP_FIPV
NUCLEOCAPSID PROTEIN
FELINE INFECTIOUS PERITONITIS
57-74




VIRUS (STRAIN 79-1146)


PNCAP_HANTV
NUCLEOCAPSID PROTEIN
HANTAAN VIRUS (STRAIN 76-118)
317-342


PNCAP_HAZVJ
NUCLEOCAPSID PROTEIN
HAZARA VIRUS (ISOLATE JC280)
428-446


PNCAP_IHNV
NUCLEOCAPSID PROTEIN
INFECTIOUS HEMATOPOIETIC
110-137
239-265




NECROSIS VIRUS (STRAIN




ROUND BUT)


PNCAP_INSV
NUCLEOCAPSID PROTEIN
IMPATIENS NECROTIC SPOT
155-179




VIRUS


PNCAP_MEASE
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN
40-59




EDMONSTON)


PNCAP_MEASH
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN HALLE)
40-59


PNCAP_MEASY
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN
40-59




YAMAGATA-1)


PNCAP_MUMP1
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN SBL-1)
156-178


PNCAP_MUMPM
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN
156-178




MIYAHARA VACCINE)


PNCAP_PHV
NUCLEOCAPSID PROTEIN
PROSPECT HILL VIRUS
36-58
218-236
256-277
321-346


PNCAP_PI1HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
42-58
86-102




(STAIN C39)


PNCAP_PI1HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
42-58
86-102




(STRAIN WASHINGTON/1957)


PNCAP_PI3B
NUCLEOCAPSID PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
163-184


PNCAP_PI3H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
163-184




(STRAIN NIH 47885)


PNCAP_PUUMH
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN
36-58
321-346




HALLNAS B1)


PNCAP_PUUMS
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN
36-58
218-236
321-346




SOTKAMO)


PNCAP_RABVA
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN AVO1)
299-322


PNCAP_RABVP
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN PV)
299-322


PNCAP_RABVS
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN SAD B19)
299-322


PNCAP_RVFVZ
NUCLEOCAPSID PROTEIN
RIFT VALLEY FEVER VIRUS
158-180




(STRAIN ZH-548 M12)


PNCAP_SEND5
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z/
29-51
86-102




HOST MUTANTS)


PNCAP_SENDE
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN ENDERS)
42-58
86-102


PNCAP_SENDH
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN HARRIS)
42-58
86-102


PNCAP_SENDZ
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z)
29-51
86-102


PNCAP_SEOUS
NUCLEOCAPSID PROTEIN
SEOUL VIRUS (STRAIN SR-11)
112-138
317-342


PNCAP_SFSV
NUCLEOCAPSID PROTEIN
SANDFLY FEVER SICILIAN VIRUS
156-181


PNCAP_TACV
NUCLEOCAPSID PROTEIN
TACARIBE VIRUS
219-241


PNCAP_UUK
NUCLEOCAPSID PROTEIN
UUKUNIEMI VIRUS
167-189


PNCAP_VHSV0
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC
240-266




SEPTICEMIA VIRUS (STRAIN 07-71)


PNCAP_VHSVM
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC
240-266




SPETICEMIA VIRUS (STRAIN




MAKAH)


PNCAP_VSVJO
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS
64-80




SEROTYPE NEW JERSEY/




STRAIN OG)


PNCAP_VSVSJ


PNEF_HV2RO
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
110-129




VIRUS TYPE 2 (ISOLATE ROD)


PNEF_HV2ST
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY
106-128




VIRUS TYPE 2 (ISOLATE ST)


PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29




A/BLACK DUCK/AUSTRALIA/




702/78)


PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24




A/CHILE/1/83)


PNRAM_IADA1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24




A/DUCK/ALBERTA/28/76)


PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29




A/DUCK/GERMANY/49)


PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29
301-317




A/FOWL PLAGUE VIRUS/




WEYBRIDGE)


PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
299-315




A/EQUINE/COR/16/74)


PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29




A/EQUINE/KENTUCKY/1/81)


PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24




A/KIEV/59/79)


PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24




A/LENINGRAD/54/1)


PNRAM_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-30




A/MEMPHIS/1/71H-A/




BELLAMY/42N)


PNRAM_IAPAR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-30




A/PARROT/ULSTER/73)


PNRAM_IAPUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-30




A/PUERTO RICO/8/34)


PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29




A/RUDDY TURNSTONE/




NEW JERSEY/60/)


PNRAM_IASH2
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29




A/SHEARWATER/AUSTRALIA/72)


PNRAM_IATKR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24
56-77




A/TURKEY/OREGON/71)


PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29




A/TERN/AUSTRALIA/G70C/75)


PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-24




A/USSR/90/77)


PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-29




A/WHALE/MAINE/1/84)


PNRAM_IAWIL
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
3-30




A/WILSON-SMITH/33)


PNRAM_INBBE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/BEIJING/1/87)


PNRAM_INBHK
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/HONG KONG/8/73)


PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/LEE/40)


PNRAM_INBLN
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/LENINGRAD/179/86)


PNRAM_INBMD
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/MARYLAND/59)


PNRAM_INBMF
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/MEMPHIS/3/89)


PNRAM_INBOR
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/OREGON/5/80)


PNRAM_INBSI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/SINGAPORE/222/79)


PNRAM_INBUS
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/USSR/100/83)


PNRAM_INBV1
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN
3-20




B/VICTORIA/3/85)


PNS1_SIDEV
PROBABLE NONSTRUCTURAL
BOMBYX DENSONUCLEOSIS
135-151



PROTEIN PRECURSO
VIRUS


PNS2_SIDEV
PROBABLE STRUCTURAL
BOMBYX DENSONUCLEOSIS
2-26
196-221
783-806



PROTEIN PRESURSO
VIRUS


PNS3_SIDEV
PROBABLE NONSTRUCTURAL
BOMBYX DENSONUCLEOSIS
60-78



PROTEIN PRECURSOR
VIRUS


PNSS_TSWVB
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
80-105
431-455




(BRAZILIAN IOSLOATE CPNH1/




BR-01)


PNSS_TSWVL
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS
80-105
436-458




(STRAIN L3)


PNTP1_VACCC
NUCLEOSIDE
VACCINIA VIRUS (STRAIN
20-45
387-403



TRIPHOSPHATASE I
COPENHAGEN)


PNTP1_VACCV
NUCLEOSIDE
VACCINIA VIRUS (STRAIN WR)
20-45
387-403



TRIPHOSPHATASE I


PNTP1_VARV
NUCLEOSIDE
VARIOLA VIRUS
293-309



TRIPHOSPHATASE I


PP100_HSV6U
MAJOR ANTIGENIC
HERPES SIMPLEX VIRUS (TYPE 6/
182-204
250-270
344-366



STRUCTURAL PROTEIN
STRAIN UGANDA-1102)


PPAP2_FOWPV
POLY(A) POLYMERASE
FOWLPOX VIRUS
79-100



REGULATORY SUBUNIT


PPAP2_MYXVA
POLY(A) POLYMERASE
MYXOMA VIRUS (ISOLATE AUST/
101-116



REGULATORY SUBUNIT
URIARRA/VERG-86/1)


PPAP2_VACCC
POLY(A) POLYMERASE
VACCINIA VIRUS (STRAIN
101-116



REGULATORY SUBUNIT
COPENHAGEN)


PPAP2_VACCV
POLY(A) POLYMERASE
VACCINIA VIRUS (STRAIN WR)
101-116



REGULATORY SUBUNIT


PPAP2_VARV
POLY(A) POLYMERASE
VARIOLA VIRUS
101-116



REGULATORY SUBUNIT


PPCNA_NPVAC
PROLIFERATING CELL
AUTOGRAPHA CALIFORNICA
67-89
227-244



NUCLEAR ANTIGEN
NUCLEAR POLYHEDROSIS VIRUS


PPE21_NPVOP
21 2 KD PROTEIN IN PE
ORGYIA PSEUDOTSUGATA
117-139



5′REGION
MULTICAPSID POLYHEDROSIS




VIRUS


PPE25_NPVAC
25 1 KD PROTEIN IN PE-P26
AUTOGRAPHA CALIFORNICA
57-83



INTERGENIC REGION
NUCLEAR POLYHEDROSIS VIRUS


PPE38_NPVAC
MAJOR IMMEDIATE EARLY
AUTOGRAPHA CALIFORNICA
17-33



PROTEIN
NUCLEAR POLYHEDROSIS VIRUS


PPEN3_ADE02
PENTON PROTEIN
HUMAN ADENOVIRUS TYPE 2
171-195


PPEN3_ADE05
PENTON PROTEIN
HUMAN ADENOVIRUS TYPE 5
171-195


PPEN3_ADEGX
PENTON PROTEIN
AVIAN ADENOVIRUS GAL10
194-214
307-324




(STRAIN SA2)


PPIV2_ADE07
MATURATION PROTEIN
HUMAN ADENOVIRUS TYPE 7
412-431


PPIV2_ADEM1
MATURATION PROTEIN
MOUSE ADENOVIRUS TYPE 1
409-428


PPOL1_BAYMG
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
739-755
835-856
1072-1094
1889-1910




(GERMAN ISOLATE)


PPOL1_BAYMJ
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS
739-755
835-856
1072-1094
1465-1485
1888-1909




(JAPANESE STRAIN II-1)


PPOL1_GCMV
RNA1 POLYPROTEIN
HUNGARIAN GRAPEVINE
691-717
1040-1062
1116-1143




CHROME MOSAIC VIRUS


PPOL1_GFLV
RNA1 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
380-396
477-503
545-564
1079-1098
1149-1171
1341-1356
1761-1785
1821-1848
2020-2044


PPOL1_TBRVS
RNA1 POLYPROTEIN
TOMATO BLACK RING VIRUS
1132-1159




(STRAIN S)


PPOL2_ARMV
RNA2 POLYPROTEIN
ARABIS MOSAIC VIRUS
129-150
243-266
346-367


PPOL2_BAYMG
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
325-350
463-485




(GERMAN ISOLATE)


PPOL2_BAYMJ
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS
325-350
463-485




(JAPANSES STRAIN II-1)


PPOL2_GFLV
RNA2 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
808-829
1021-1045


PPOL2_TBRVS
RNA2 POLYPROTEIN
TOMATO BLACK RING VIRUS
425-446
541-557
856-876
1203-1223




(STRAIN S)


PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS
316-340
427-448
1527-1554




(ISOLATE RASPBERRY)


PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS
1833-1859




(STRAIN VG-5-27)


PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
627-653
943-965
1119-1134
1282-1297
1363-1387
1868-1892
2460-2487
2608-2628
2883-2898




(ISOLATE NADL)





3141-3161
3220-3241
3856-3871
3967-3986


PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
627-653
943-965
1119-1134
1138-1163
1189-1205
1282-1297
1363-1387
1778-1802
2370-2397




(STRAIN SD-1)





2518-2538
2741-2766
2793-2808
3766-3781


PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21
850-867




(STRAIN COE)


PPOLG_COXA3
GENOME POLYPROTEIN
COXSACKIEVIRUS A23
67-92




(ECHO 9 VIRUS)


PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9
1491-1517
1601-1626




(STRAIN GRIGGS)


PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
1472-1498
1582-1607


PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKEIVIRUS B3
228-255
1475-1501
1585-1610


PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
821-846
1473-1499
1583-1608


PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
1475-1501
1585-1610


PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN
918-943
1111-1138
1211-1236
1243-1260
1612-1628
2222-2248
2348-2365
2401-2426
3050-3069




SINGAPORE S275/90)


PPOLG_DEN1W
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN
919-944
1112-1139




WESTERN PACIFIC)


PPOLG_DEN23
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (ISOLATE
336-354




MALAYSIA M3)


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
848-868
919-944
1112-1139
1244-1261
1283-1301
1613-1629
2293-2318
2347-2364
2405-2425




16681)
2700-2726


PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
848-868
919-944
1112-1139
1244-1261
1283-1301
1376-1396
1613-1629
2293-2318
2347-2364




16681-PDK53)





2405-2425
2700-2726


PPOLG_DEN2D
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
848-868
919-944




(STRAIN D2-04)


PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
848-868
919-944
1112-1139
1244-1261
1176-1396
1613-1629
2293-2318
2347-2364
2405-2425




(STRAIN JAMAICA)
2700-2726


PPOLG_DEN2N
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
100-120
171-196
364-391




(STRAIN NEW GUINEA C)


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
919-944
1112-1139
1244-1261
1283-1301
1376-1396
1613-1629
2290-2315
2344-2361
2402-2422




(STRAIN PR159/51)
2697-2723


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
639-664
832-859
964-981
1203-1219




(STRAIN TONGA 1974)


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
917-942
1210-1228
1242-1259
1174-1194
1611-1627
2141-2162
2221-2247
2146-2361
2199-2424





2698-2724
3048-3067


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
1209-1227
1241-1258
1611-1627
2220-2246
2342-2359
2400-2420
3045-3064


PPOLG_EC11G
GENOME POLYPROTEIN
ECHOVIRUS 11 (STRAIN GREGORY)
664-690
774-799


PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
225-247
558-578
1194-1215
1650-1667


PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
560-580
1120-1141
1196-1217




(STRAIN EMC-B




NONDIABETOGENI)


PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
560-580
1120-1141
1196-1217




(STRAIN EMC-D DIABETOGENIC)


PPOLG_ENMG3
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCAR-
560-580



DITIS VIRUS (STRAIN 37A)


PPOLG_ENMGO
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCAR-
493-513



DITIS VIRUS


PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
121-141
984-1003
1036-1057
1396-1411
1465-1487
1764-1791




VIRUS (STRAIN A10-61)


PPOLG_FMDV5
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
162-187




VIRUS (STRAIN A5)


PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
121-140
984-1003
1036-1057
1396-1411
1465-1487
1763-1790




VIRUS (STRAIN A12)


PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
121-141
984-1003
1036-1057
1396-1411
1465-1487
1763-1790




VIRUS (STRAINS O1K AND O1BFS)(


PPOLG_FMDVS
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
301-320




VIRUS (STRAIN C1-SANTA PAU




[C-S8])


PPOLG_FMDVT
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE
121-141
979-998




VIRUS (STRAIN C1)


PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
112-133
143-169
619-640
683-699
833-857
2327-2347
2442-2457
2837-2859


PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN
102-128
1143-1163
1282-1301
1778-1802
2370-2397
2518-2538
3131-3152
3737-3753
3767-3782




ALFORT)





3877-3893


PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN
102-128
1143-1163
1282-1301
1778-1802
2370-2397
2518-2538
3131-3152
3737-3753
3767-3782




BRESCIA)





3877-3893


PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
2327-2347
2441-2456
2836-2858
2988-3007




(ISOLATE BK)


PPOLG_HCVE1
GENOME POLYPROTEIN
HEPATITIS C VIRUS
27-53




(ISOLATE EC1)


PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
833-853
863-880
2442-2457
2837-2859




(ISOLATE H)


PPOLG_HCVH4
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169




(ISOLATE HCV-476)


PPOLG_HCVH7
GENOME POLYPROTEIN
HEPATITIS C VIRUS
15-41




(ISOLATE HCT27)


PPOLG_HCVH8
GENOME POLYPROTEIN
HEPATITIS C VIRUS
27-53




(ISOLATE HCT18)


PPOLG_HCVHK
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169




(ISOLATE HCV-KF)


PPOLG_HCVJ2
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169




(ISOLATE HC-J2)


PPOLG_HCVJ5
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
623-644
687-703




(ISOLATE HC-J5)


PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
623-644
687-703
837-861
1827-1853
2327-2347
2859-2881
3011-3030




(ISOLATE HC-J6)


PPOLG_HCVJ7
GENOME POLYPROTEIN
HEPATITIS C VIRUS
143-169
623-644
687-703




(ISOLATE HC-J7)


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
687-703
837-861
867-884
1172-1188
1827-1853
2859-2881
3011-3030




(ISOLATE HC-J8)


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
833-857
863-880
2327-2347
2836-2858
2988-3007




(ISOLATE JAPANESE)


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
833-857
2327-2347
2441-2456
2836-2858




(ISOLATE HC-JT)


PPOLG_HCVTH
GENOME POLYPROTEIN
HEPATITIS C VIRUS
27-53




(ISOLATE TH)


PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS
112-133
143-169
619-640
683-699
833-857
2327-2347
2441-2456
2836-2858
2988-3007




(ISOLATE TAIWAN)


PPOLG_HPAV1
GENOME POLYPROTEIN
HEPATITIS A VIRUS
303-323




(STRAIN LCDC-1)


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS
401-428
799-819
1195-1210
1687-1708
2068-2092




(STRAIN 24A)


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1687-1708
2008-2033
2068-2092




(STRAIN 43C)


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1687-1708
2008-2033
2068-2092




(STAIN 18F)


PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819




(STRAIN CR326)


PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS
778-798




(STRAIN GA76)


PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1688-1709
2009-2034
2069-2093




(STRAIN HM-175)


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1688-1709
2009-2034
2069-2093




(STRAIN LA)


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS
799-819
1195-1210
1688-1709
2009-2034
2069-2093




(STRAIN MBB)


PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
1199-1214
1690-1711
2012-2037
2072-2096




(STRAIN AGM-27)


PPOLG_HRV14
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14 (HRV-14)
1383-1406
1962-1982


PPOLG_HRV1A
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1A (HRV-1A)
361-379
547-562


PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B (HRV-1B)
386-404
572-587
859-876
1029-1052
1453-1478
1625-1641
1816-1842
1941-1961


PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2 (HRV-2)
569-584
694-713
1022-1045
1446-1469
1618-1634
1809-1835
1843-1866


PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89 (HRV-89)
576-591
1038-1061
1229-1253
1332-1358
1460-1485
1632-1648
1823-1849
1948-1968


PPOLG_HUBV7
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 70
1492-1515




(STRAIN J670/71)


PPOLG_IBDVO
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
905-922




DISEASE VIRUS (STRAIN OH)


PPOLG_JAEV1
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
938-963
1306-1325
1642-1658
2245-2270
2326-2351
2462-2481




(STRAIN SA-14)


PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
938-963
1306-1325
1642-1658
2245-2270
2326-2351
2462-2481




(STRAIN SA(V))


PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
938-963
1306-1325
1642-1658
2245-2270
2326-2351
2462-2481




(STRAIN JAOARS982)


PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
866-891
1234-1253




(STRAIN NAKAYAMA)


PPOLG_KUNJM
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
561-576
935-960
1307-1326
1643-1659
2246-2271
2327-2352
2440-2460
2463-2483
2641-2658





2798-2814


PPOLG_LANVT
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
67-89
527-551
736-756
835-862
1157-1178
1519-1544
1630-1653
2158-2182
2230-2257





2366-2387
2424-2451
2766-2784


PPOLG_LANVY
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN
67-89
527-551




YELANTSEV)


PPOLG_LIV
GENOME POLYPROTEIN
LOUPING ILL VIRUS (L1)
67-89
527-551
835-862


PPOLG_LIVSB
GENOME POLYPROTEIN
LOUPING ILL VIRUS (STRAIN
247-271




SB 526)


PPOLG_MCFA
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT
120-137
1174-1199
1402-1428
1788-1805
1872-1887
2012-2029
2810-2827




(CFA FLAVIVIRUS)


PPOLG_MDMV
GENOME POLYPROTEIN
MAIZE DWARF MOSAIC VIRUS
39-56


PPOLG_MVEV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS
331-347
563-578
937-962
1305-1324
1523-1548
1585-1602
1641-1657




VIRUS


PPOLG_OMV
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
90-110
111-126
678-696
898-914


PPOLG_PEMVC
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS
690-717
826-846
1009-1034
1301-1348
1455-1482
1484-1500
1676-1697
1921-1945
2002-2022




(CALIFORNIA ISOLATE)


PPOLG_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1
1409-1432




(STRAIN MAHONEY)


PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1
1410-1433




(STRAIN SABIN)


PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2
1408-1431




(STRAIN LANSING)


PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2
1408-1431




(STRAIN W-2)


PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3
577-594
1407-1430




(STRAIN 23127)


PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3
577-594
1407-1430




(STRAINS P3/LEON/37 AND




P3/LEON 12A[1]B)


PPOLG_PPVD
GENOME POLYPROTEIN
PLUM POX POTYVIRUS
153-178
551-571
714-741
1098-1115
1468-1495
1497-1513
2606-2624
3084-3106




(STRAIN D)


PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS
981-999
1461-1483




(STRAIN EL AMAR)


PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS
153-178
713-740
1097-1114
1467-1494
1496-1512
2605-2623
3068-3090




(ISOLATE NAT)


PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS
153-178
713-740
1097-1114
1467-1494
1496-1512
2605-2623
3083-3105




(STRAIN RANKOVIC)


PPOLG_PRSVH
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
272-290




(STRAIN P/MUTANT HA)


PPOLG_PRSVP
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
163-181




(STRAIN P/MUTANT HA-5-1)


PPOLG_PRSVW
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS
163-181




(STRAIN W)


PPOLG_PSBMV
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS
47-62
251-268
339-357
654-674
981-1001
1411-1428
1565-1592
2708-2726




(STRAIN DPD1)


PPOLG_PVYC
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN C)
755-776


PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y
755-776
964-982
1010-1036
1109-1125
1456-1483
1485-1501
1677-1698
1922-1946
2588-2606




(STRAIN HUNGARIAN)





3004-3026


PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N)
755-776
964-982
1010-1036
1109-1125
1456-1483
1485-1501
1677-1698
1922-1946
2590-2608


PPOLG_PVYO
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN O)
755-776


PPOLG_PYFV1
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS
592-616
1326-1353
1626-1651
1903-1924
2621-2642
2702-2729
2766-2783




(ISOLATE P-121)


PPOLG_STEVM
GENOME POLYPROTEIN
ST LOUIS ENCEPHALITIS VIRUS
1301-1324




(STRAIN MS1-7)


PPOLG_SUMVS
GENOME POLYPROTEIN
SUGARCANE MOSAIC VIRUS
39-56




(STRAIN SC)


PPOLG_SVDVH
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE
1475-1501
1585-1610




VIRUS (STRAIN H/3 '76)


PPOLG_SVDVU
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE
1475-1501
1585-1610




VIRUS (STRAIN UKG/27/72)


PPOLG_TBEVS
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS
67-89
527-551
1363-1378
1519-1544
1630-1653
1740-1761
2230-2257
2366-2387
2765-2783




VIRUS (STRAIN SOFJIN)


PPOLG_TBEVW
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS
67-89
527-551
835-862
1519-1544
1630-1653
2230-2257
2366-2387
2766-2784




VIRUS (WESTERN SUBTYPE)


PPLG_TEV
GENOME POLYPROTEIN
TOBACCO ETCH VIRUS (TEV)
827-853
953-980
1016-1042
1114-1130
1307-1324
1490-1506


PPOLG_TMEVB
GENOME POLYPROTEIN
THEILER'S MURINE
924-941
1074-1095
1119-1140
1520-1546
1658-1677




ENCEPHALOMYELITIS VIRUS




(STRAIN BEAN 8386)


PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE
1072-1093
1117-1138
1518-1544
1656-1675




ENCEPHALOMYELITIS VIRUS




(STRAIN DA)


PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE
645-670
924-941
1074-1095
1119-1140
1520-1546
1658-1677




ENCEPHALOMYELITIS VIRUS




(STRAIN GDV11)


PPOLG_TUMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS
23-39
970-991
1138-1156
1573-1595


PPOLG_TVMV
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS
404-428
497-517
660-687
850-866
967-992
1257-1274
2537-2562


PPOLG_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
198-218


PPOLG_WNV
GENOME POLYPROTEIN
WEST NILE VIRUS
557-572
931-956
1303-1322
1639-1655
2240-2267
2324-2349
2437-2457
2638-2655
2795-2811


PPOLG_YEFV1
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
74-95
1157-1179
1228-1248
1385-1405
1495-1511
1625-1641
1761-1778
2229-2254




(STRAIN 17D)


PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
74-95
1157-1179
1228-1248
1385-1405
1495-1511
1625-1641
1761-1778
2229-2254




(STRAIN PASTEUR 17D-204)


PPOLG_YEFV8
GENOME POLYPROTEIN
YELLOW FEVER VIRUS
74-95




(STRAIN 1899/81)


PPOLH_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1
1410-1433




(STRAIN MAHONEY)


PPOLN_EEVVT
NONSTRUCTURAL
VENEZUELAN EQUINE
90-107
235-254
613-634
1001-1018
1153-1178
1923-1939
2129-2144
2201-2221



POLYPROTEIN
ENCEPHALITIS VIRUS (STRAIN




TRINIDAD DON)


PPOLN_FCVC6
NON-STRUCTURAL
FELINE CACICIVIRUS (STRAIN
443-469
748-766
902-923
1069-1088



POLYPROTEIN
CF1/68 FIV)


PPOLN_FCVF4
NON-STRUCTURAL
FELINE CACICIVIRUS (STRAIN
300-326



POLYPROTEIN
JAPANESE F4)


PPOLN_FCVF9
NON-STRUCTURAL
FELINE CACICIVIRUS (STRAIN F9)
171-186
262-283
919-945
1224-1242
1378-1399
1545-1564



POLYPROTEIN


PPOLN_HEVBU
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN
250-266
1274-1291



POLYPROTEIN
BURMA)


PPOLN_HEVME
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN
250-266
1272-1289



POLYPROTEIN
MEXICO)


PPOLN_HEVMY
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN
250-266
1274-1291



POLYPROTEIN
MYANMAR)


PPOLN_HEVPA
NON-STRUCTURAL
HEPATITIS E VIRUS (STRAIN
249-265
1273-1290



POLYPROTEIN
PAKISTAN)


PPOLN_MIDDV
NONSTRUCTURAL
MIDDELBURG VIRUS
488-512
628-643
700-720



POLYPROTEIN


PPOLN_ONNVG
NONSTRUCTURAL
O'NYONG-NYONG VIRUS
90-107
613-634
2148-2163
2220-2240



POLYPROTEIN
(STRAIN GULU)


PPOLN_RHDV
NON-STRUCTURAL
RABBIT HEMORRHAGIC DISEASE
156-180
270-292
299-320
479-502
1330-1353
1429-1455
1471-1490



POLYPROTEIN
VIRUS


PPOLN_RHDV3
NON-STRUCTURAL
RABBIT HEMORRHAGIC DISEASE
115-135



POLYPROTEIN
VIRUS (STRAIN V-351)


PPOLN_RRVN
NONSTRUCTURAL
ROSS RIVER VIRUS
89-106
611-632
2113-2128
2185-2205



POLYPROTEIN
(STRAIN NB5092)


PPOLN_RRVT
NONSTRUCTURAL
ROSS RIVER VIRUS
782-797
854-874



POLYPROTEIN
(STRAIN T48)


PPOLN_RUBVT
NONSTRUCTURAL
RUBELLA VIRUS (STRAIN
14-37
97-113
263-279
670-694
901-918
1374-1393
2035-2052



POLYPROTEIN
THERIEN)


PPOLN_SFV
NONSTRUCTURAL
SEMLIKI FOREST VIRUS
91-108
617-643
2062-2077
2134-2154



POLYPROTEIN


PPOLN_SINDO
NONSTRUCTURAL
SINDBIS VIRUS (SUBTYPE
620-646
1123-1150
1790-1814
2148-3163
2220-2240



POLYPROTEIN
OCKELBO/STRAIN EDSBYN 82-5)


PPOLN_SINDV
NONSTRUCTURAL
SINDBIS VIRUS (STRAIN HRSP)
620-646
1123-1150
1744-1763
1790-1812
2146-2161
2218-2238



POLYPROTEIN


PPOLR_EPMV
RNA REPLICASE
EGGPLANT MOSAIC VIRUS
808-833



POLYPROTEIN


PPOLR_OYMV
RNA REPLICASE
ONONIS YELLOW MOSAIC VIRUS
707-727
941-962



POLYPROTEIN


PPOLR_TYMV
RNA REPLICASE
TURNIP YELLOW MOSAIC VIRUS
212-233
436-453
1173-1192



POLYPROTEIN


PPOLR_TYMVA
RNA REPLICASE
TURNIP YELLOW MOSAIC VIRUS
212-233
436-453
1173-1192



POLYPROTEIN
(AUSTRALIAN ISOLATE)


PPOLR_TYMVC
RNA REPLICASE
TURNIP YELLOW MOSAIC VIRUS
212-233
436-453
1173-1192



POLYPROTEIN
(ISOLATE TYMC)


PPOLS_EEEV
STRUCTURAL POLYPROTEIN
EASTER EQUINE ENCEPHALITIS
35-50
213-229
491-507




VIRUS


PPOLS_EEEV3
STRUCTURAL POLYPROTEIN
EASTER EQUINE ENCEPHALITIS
35-50
214-230
492-508




VIRUS


PPOLS_EEVV8
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE
32-48
229-245
504-522




ENCEPHALITIS VIRUS




(STRAIN TC-83)


PPOLS_EEVVT
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE
32-48
229-245
504-522




ENCEPHALITIS VIRUS




(STRAIN TRINIDAD DON)


PPOLS_IBVD5
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
900-922




DISEASE VIRUS (STRAIN 52/70)


PPOLS_IBDVA
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
900-922




DISEASE VIRUS (STRAIN AUSTRALIAN 00)


PPOLS_IBDVC
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
900-922




DISEASE VIRUS (STRAIN CU-1)


PPOLS_IBDVP
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
881-903




DISEASE VIRUS (STRAIN PBG-98)


PPOLS_IBDVS
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL
900-922




DISEASE VIRUS (STRAIN STC)


PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS
688-708




(STRAIN GULU)


PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
1216-1243


PPOLS_RUBVH
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE
281-302




STRAIN HPV77)


PPOLS_RUBVM
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN M33)
280-301


PPOLS_RUBVR
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE
281-302




STRAIN RA27/3)


PPOLS_RUBVT
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN
281-302
1041-1060




THERIEN)


PPOLS_SFV
STRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
35-59
751-772
780-801


PPOLS_SINDO
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE
33-52




OCKELBO/STRAIN EDSBYN 82-5)


PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAIN
33-52




HRSP AND HRLP)


PPOLS_WEEV
STRUCTURAL POLYPROTEIN
WESTERN EQUINE
36-51
909-933




ENCEPHALITIS VIRUS


PPOL_AVIRE
POL POLYPROTEIN
AVIAN RETICULOENDOTHELIOSIS
283-303




VIRUS


PPOL_BAEVM
POL POLYPROTEIN
BABOON ENDOGENOUS VIRUS
526-544
973-993
999-1019
1070-1091




(STRAIN M7)


PPOL_BIV06
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY
101-119
742-768
868-889




VIRUS (ISOLATE 106)


PPOL_BIV27
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY
101-119
742-768
868-889




VIRUS (ISOLATE 127)


PPOL_BLVAU
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS
487-504




(AUSTRALIAN ISOLATE)


PPOL_BLVJ
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS
487-504



(REVERSE TRANSCRIPTASE)
(JAPANESE ISOLATE BLV-1)


PPOL_CAEVC
POL POLYPROTEIN
CAPRINE ARTHRITIS
393-419
656-671




ENCEPHALITIS VIRUS (STRAIN




CORK)


PPOL_CAMVC
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
184-204
380-407
471-494




(STRAIN CM-1841)


PPOL_CAMVD
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
175-199
375-402
466-489




(STRAIN D/H)


PPOL_CAMVE
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
184-204
380-407
471-494




(STRAIN BBC)


PPOL_CAMVN
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
70-97
185-205
381-408
472-495




(STRAIN NY8153)


PPOL_CAMVS
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS
184-204
380-407
471-494




(STRAIN STRASBOURG)


PPOL_CERV
ENZYMATIC POLYPROTEIN
CARNATION ETCHED RING VIRUS
161-186
455-478


PPOL_COYMV
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE
320-343
1286-1311
1606-1622
1641-1665




VIRUS


PPOL_EIAV9
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA
437-456




VIRUS (CLONE 1369)


PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA
437-456




VIRUS (CLONE CL22)


PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA
436-455




VIRUS (ISOLATE WYOMING)


PPOL_FENV1
POL POLYPROTEIN
FELINE ENDOGENOUS VIRUS
383-401
856-876




ECE1


PPOL_FIVPE
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY
407-426
755-775




VIRUS (ISOLATE PETALUMA)


PPOL_FIVSD
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY
407-426
755-775




VIRUS (ISOLATE SAN DIEGO)


PPOL_FIVT2
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY
406-425
665-690
755-775
1041-1060




VIRUS (ISOLATE TM2)


PPOL_FMVD
ENZYMATIC POLYPROTEIN
FIGWORT MOSAIC VIRUS
191-212
464-487




(STRAIN DXS)


PPOL_FOAMV
POL POLYPROTEIN
HUMAN SPUMARETROVIRUS
126-147
768-788


PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
59-80
971-991
1048-1071


PPOL_HTLIA
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
330-346




TYPE I (STRAIN ATK)


PPOL_HTLIC
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
330-346




TYPE I (CARIBBEAN ISOLATE)


PPOL_HTLV2
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
609-627




TYPE II


PPOL_HV1A2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
860-887




VIRUS TYPE 1 (ARV2/SF2




ISOLATE)


PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
635-660
872-899




VIRUS TYPE 1 (BH10




ISOLATE)


PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
872-899




VIRUS TYPE 1 (BH5 ISOLATE)


PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
872-899




VIRUS TYPE 1 (BRU ISOLATE)


PPOL_HV1EL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
622-647
859-886




VIRUS TYPE 1 (ELI ISOLATE)


PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
860-887




VIRUS TYPE 1 (HXB2 ISOLATE)


PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
864-891




VIRUS TYPE 1 (JRCSF ISOLATE)


PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
859-886




VIRUS TYPE 1 (MAL ISOLATE)


PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
863-890




VIRUS TYPE 1 (MN ISOLATE)


PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
623-648
860-887




VIRUS TYPE 1 (NEW YORK-5




ISOLATE)


PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
622-647
859-886




VIRUS TYPE 1 (NDK ISOLATE)


PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
860-887




VIRUS TYPE 1 (OY1 ISOLATE)


PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
635-660
872-899




VIRUS TYPE 1 (PV22 ISOLATE)


PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
859-886




VIRUS TYPE 1 (RF/HAT ISOLATE)


PPOL_HV1U4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
859-886




VIRUS TYPE 1 (STRAIN




UGANDAN/ISO)


PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
622-647
859-886




VIRUS TYPE 1 (Z2/CDC-Z34




ISOLATE)


PPOL_HV1Z6
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
5-32




VIRUS TYPE 1 (ZAIRE 6 ISOLATE)


PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
379-406
907-934




VIRUS TYPE 2 (ISOLATE BEN)


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
886-913




VIRUS TYPE 2 (ISOLATE CAM2)


PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
397-424
925-952




VIRUS TYPE 2 (ISOLATE D194)


PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
907-934




VIRUS TYPE 2 (ISOLATE D205.7)


PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
359-386
887-914




VIRUS TYPE 2 (ISOLATE GHANA-1)


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
543-564
771-792
887-914




VIRUS TYPE 2 (ISOLATE NIH-Z)


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
888-915




VIRUS TYPE 2 (ISOLATE ROD)


PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY
359-386
887-907




VIRUS TYPE 2 (ISOLATE SBLISY)


PPOL_IPHA
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL
166-190
198-225
460-477




A-PARTICLE


PPOL_IPMA
PUTATIVE POL POLYPROTEIN
MOUSE INTRACISTERNAL
183-201
209-236
506-523
531-552
769-789




A-PARTICLE


PPOL_IPMAI
PROBABLE
MOUSE INTRACISTERNAL
102-120
128-155
407-423
425-442



POL POLYPROTEIN
A-PARTICLE


PPOL_JSRV
POL POLYPROTEIN
SHEEP PULMONARY
186-213
507-526
660-679




ADENOMATOSIS VIRUS




(JAAGSIEKTE SHEEP RET


PPOL_MCFF3
POL POLYPROTEIN
MINK CELL FOCUS-FORMING
37-53




MURINE LEUKEMIA VIRUS




(ISOLATE C1-


PPOL_MLVAK
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
651-671
728-744


PPOL_MLVAV
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
335-354
978-998
1004-1024
1081-1097


PPOL_MLVCB
POL PROTEIN
CAS-BR-E MURINE LEUKEMIA
64-84
90-110
167-183




VIRUS


PPOL_MLVF5
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA
340-359
983-1003
1009-1029
1086-1102




VIRUS (ISOLATE 57)


PPOL_MLVFF
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA
340-359
983-1003
1009-1029
1086-1102




VIRUS (ISOLATE FB29)


PPOL_MLVFP
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA
340-359
983-1003
1009-1029
1086-1102




VIRUS (ISOLATE PVC-211)


PPOL_MLVMO
POL POLYPROTEIN
MOLONEY MURINE LEUKEMIA
335-354
978-998




VIRUS


PPOL_MLVRD
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA
335-354
978-998
1004-1024
1081-1097




VIRUS


PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA
363-383
389-409
466-482




VIRUS (STRAIN KAPLAN)


PPOL_MMTVB
POL POLYPROTEIN
MOUSE MAMMARY TUMOR
196-219
731-751




VIRUS (STRAIN BR6)


PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER
743-763




VIRUS


PPOL_OMVVS
POL POLYPROTEIN
OVINE LENTIVIRUS
369-395
469-488
632-647
1045-1063




(STRAIN SA-OMVV)


PPOL_RSVP
POL POLYPROTEIN
ROUS SARCOMA VIRUS
719-742




(STRAIN PRAGUE C)


PPOL_RTBV
POLYPROTEIN
RICE TUNGRO BACILLIFORM
891-915
1058-1083




VIRUS (RTBV)


PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM
891-915
1058-1083




VIRUS (ISOLATE PHILIPPINES)


PPOL_SFV1
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
188-204
335-356
845-869
976-996


PPOL_SFV3L
POL POLYPROTEIN
SIMIAN FOAMY VIRUS
186-206
337-358
847-871
978-998




(TYPE 3/STRAIN LK3)


PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
895-915




VIRUS (AGM155 ISOLATE)


PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
711-726
900-920




VIRUS (AGM3 ISOLATE)


PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
899-926




VIRUS (ISOLATE AGM/CLONE




GRI-1)


PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
726-741
915-935




VIRUS (TYO-1 ISOLATE)


PPOL_SIVCZ
POL POLYPROTEIN
CHIMPANZEE
884-911




IMMUNODEFICIENCY VIRUS


PPOL_SIVGB
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
680-695
869-896




VIRUS (ISOLATE GB1)


PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
380-407
908-935




VIRUS (MM142-83 ISOLATE)


PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
380-407
712-737
906-933




VIRUS (K6W ISOLATE)


PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
343-370
871-898




VIRUS (F236/SMH4 ISOLATE)


PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY
346-373
874-901




VIRUS (PBJ/BC13 ISOLATE)


PPOL_SMRVH
POL POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS
748-768


PPOL_SMSAV
POL POLYPROTEIN
SIMIAN SARCOMA VIRUS
100-120
177-200


PPOL_SOCMV
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE
131-155




VIRUS


PPOL_SRV1
POL POLYPROTEIN
SIMIAN RETROVIRUS
743-763


PPOL_VILV
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
488-507
651-666
971-991


PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/
488-507
651-666
971-991




CLONE LV1-IKS1)


PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/
488-507
651-666
971-991




CLONE LV1-IKS2)


PPP15_HCMVA
LARGE STRUCTURAL
HUMAN CYTOMEGALOVIRUS
153-171
183-210



PHOSPHOPROTEIN PP150
(STRAIN AD169)


PPP28_HCMVA
28 KD STRUCTURAL
HUMAN CYTOMEGALOVIRUS
116-141



PHOSPHOPROTEIN
(STRAIN AD169)


PPP41_HSV6G
PHOSPHOPROTEIN P41
HERPES SIMPLEX VIRUS
158-175
396-411




(TYPE 6/STRAIN GS)


PPP65_HCMVA
65 KD LOWER MATRIX
HUMAN CYTOMEGALOVIRUS
311-333



PHOSPHOPROTEIN
(STRAIN AD169)


PPP65_HCMVT
64 KD LOWER MATRIX
HUMAN CYTOMEGALOVIRUS
301-323



PHOSPHOPROTEIN
(STRAIN TOWNE)


PPP71_HCMVA
71 KD UPPER MATRIX
HUMAN CYTOMEGALOVIRUS
79-102



PHOSPHOPROTEIN
(STRAIN AD169)


PPR73_MMTVB
PROTEIN PR73
MOUSE MAMMARY TUMOR
40-61




VIRUS (STRAIN BR6)


PPR73_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR
40-61




VIRUS (STRAIN GR)


PPR7L_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR
44-65




VIRUS (STRAIN GR)


PPR7R_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR
40-61




VIRUS (STRAIN GR)


PRASH_MSVHA
TRANSFORMING PROTEINS
HARVEY MURINE SARCOMA
49-73



P21 AND P29
VIRUS


PRASH_RRASV
TRANSFORMING PROTEINS
RASHEED RAT SARCOMA VIRUS
56-80



P21 AND P29


PREEP_CSV
REPEAT ELEMENT PROTEIN
CAMPOLETIS SONORENSIS VIRUS
14-36


PREFR_VACCV
RIFAMPICIN RESISTANCE
VACCINIA VIRUS (STRAIN WR),
274-298
316-335
517-535



PROTEIN
AND (STRAIN COPENHAGEN)


PREFR_VARV
RIFAMPICIN RESISTANCE
VARIOLA VIRUS
274-298
316-335
517-535



PROTEIN


PREV_SIVAG
REV PROTEIN
SIMIAN IMMUNODEFICIENCY
2-17




VIRUS (AGM3 ISOLATE)


PREV_SIVGB
REV PROTEIN
SIMIAN IMMUNODEFICIENCY
45-72




VIRUS (ISOLATE GB1)


PRIR1_ASFM2
RIBONUCLEOSIDE-
AFRICAN SWINE FEVER VIRUS
139-164
189-210
495-510



DIPHOSPHATE REDUCTASE
(ISOLATE MALAWI LIL 20/1)


PRIR1_EBV
RIBONUCLEOTIDE
EPSTEIN-BARR VIRUS
793-812



REDUCTASE
(STRAIN B95-8)


PRIR1_HCMVA
RIBONUCLEOTIDE
HUMAN CYTOMEGALOVIRUS
192-212
669-684



REDUCTASE
(STRAIN AD169)


PRIR1_HSV11
RIBONUCLEOTIDE
HERPES SIMPLEX VIRUS
415-430
587-613



REDUCTASE
(TYPE 1/STRAIN 17)


PRIR1_HSVEB
RIBONUCLEOTIDE
EQUINE HERPESVIRUS TYPE 1
60-85
266-288
668-694



REDUCTASE
(STRAIN AB4P)


PRIR1_HSVSA
RIBONUCLEOTIDE
HERPESVIRUS SAIMIRI
136-151



REDUCTASE
(STRAIN 11)


PRIR1_VACCC
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN
36-51



REDUCTASE
COPENHAGEN)


PRIR1_VACCV
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN WR)
36-51



REDUCTASE


PRIR1_VARV
RIBONUCLEOTIDE
VARIOLA VIRUS
36-51



REDUCTASE


PRIR1_VZVD
RIBONUCLEOTIDE
VARICELLA-ZOSTER VIRUS
34-58
221-247
258-280



REDUCTASE
(STRAIN DUMAS)


PRIR2_EBV
RIBONUCLEOTIDE
EPSTEIN-BARR VIRUS
209-236



REDUCTASE
(STRAIN B95-8)


PRIR2_HSV11
RIBONUCLEOTIDE
HERPES SIMPLEX VIRUS
44-66
275-292



REDUCTASE
(TYPE 1/STRAIN 17)


PRIR2_HSVIK
RIBONUCLEOTIDE
HERPES SIMPLEX VIRUS
43-65
245-261
274-291



REDUCTASE
(TYPE 1/STRAIN KOS)


PRIR2_HSV23
RIBONUCLEOTIDE
HERPES SIMPLEX VIRUS
41-63
272-289



REDUCTASE
(TYPE 2/STRAIN 333)


PRIR2_HSVB3
RIBONUCLEOTIDE
BOVINE HERPESVIRUS TYPE 1
244-266



REDUCTASE
(STRAIN 34)


PRIR2_HSVEB
RIBONUCLEOTIDE
EQUINE HERPESVIRUS TYPE 1
61-88
251-273



REDUCTASE
(STRAIN AB4P)


PRIR2_HSVSA
RIBONUCLEOTIDE
HERPESVIRUS SAIMIRI (STRAIN 11)
212-239



REDUCTASE


PRIR2_SFVKA
RIBONUCLEOTIDE
SHOPE FIBROMA VIRUS
184-206
215-237



REDUCTASE
(STRAIN KASZA)


PRIR2_VACCC
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN
184-206



REDUCTASE
COPENHAGEN)


PRIR2_VACCP
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN L-IVP)
184-206



REDUCTASE


PRIR2_VACCV
RIBONUCLEOTIDE
VACCINIA VIRUS (STRAIN WR)
184-206



REDUCTASE


PRIR2_VARV
RIBONUCLEOTIDE
VARIOLA VIRUS
184-206
215-237



REDUCTASE


PRIR2_VZVD
RIBONUCLEOTIDE
VARICELLA-ZOSTER VIRUS
237-258



REDUCTASE
(STRAIN DUMAS)


PRMIL_AVEVR
RMIL SER/THR-PROTEIN
AVIAN ROUS-ASSOCIATED VIRUS
380-405



KINASE TRANSFORMING P
TYPE 1


PRP94_VACCV
RNA-POL-ASSOCIATED
VACCINIA VIRUS (STRAIN WR),
173-189
265-290
371-394
561-578



TRANSCRIPTION
AND (STRAIN COPENHAGEN)



SPEC FACT


PRP94_VARV
RNA-POL-ASSOCIATED
VARIOLA VIRUS
173-189
265-290
371-394
561-578



TRANSCRIPTION
AND (STRAIN COPENHAGEN)



SPEC FACT


PRPO1_VACCC
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN
76-96
304-329
848-871
1005-1032



POLYMERASE 147 KD POLYPE
COPENHAGEN)


PRPO1_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR)
76-96
304-329
848-871



POLMERASE 147 KD POLYPE


PRPO1_VARV
DNA-DIRECTED RNA POL 147
VARIOLA VIRUS
76-96
304-329
848-871
1005-1032



KD POLYPE


PRPO2_CAPVK
DNA-DIRECTED RNA
CAPRIPOXVIRUS (STRAIN KS-1)
12-29
477-498



POLYMERASE 132 KD



POLYPE


PRPO2_COWPX
DNA-DIRECTED RNA
COWPOX VIRUS
150-170
258-274
480-505



POLYMERASE 132 KD



POLYPE


PRPO2_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR),
150-170
258-274
480-505



POLYMERASE 132 KD
AND (STRAIN COPENHAGEN)



POLYPE


PRPO2_VARV
DNA-DIRECTED RNA
VARIOLA VIRUS
150-170
258-274
480-505



POLYMERASE 132 KD



POLYPEP


PRPO4_VACCC
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN
33-48



POLYMERASE 35 KD
COPENHAGEN)



POLYPEP


PRPO4_VACCV
DNA-DIRECTED RNA
VACCINAI VIRUS (STRAIN WR)
33-48



POLYMERASE 35 KD



POLYPEP


PRPO4_VARV
DNA-DIRECTED RNA
VARIOLA VIRUS
33-55



POLYMERASE 35 KD



POLYPEP


PRPO6_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR),
38-59



POLYMERASE 19 KD
AND (STRAIN COPENHAGEN)



POLYPEP


PRPO7_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR),
38-59



POLYMERASE 19 KD
AND (STRAIN COPENHAGEN)



POLYPEP


PRPO7_VARV
DNA-DIRECTED RNA
VARIOLA VIRUS
38-59



POLYMERASE 19 KD



POLYPEP


PRPO8_FOWP1
DNA-DIRECTED RNA
FOWLPOX VIRUS (STRAIN FP-1)
57-81



POLYMERASE 18 KD



POLYPEP


PRPOA_LELV
RNA-DIRECTED RNA
LELYSTAD VIRUS
175-197
707-729
1164-1180
1233-1258
1513-1530
1531-1546
1955-1977
2320-2343
2802-2823



POLYMERASE





3133-3156


PRPOL_EAV
RNA-DIRECTED RNA
EQUINE ARTERITIS VIRUS
97-118
602-617
754-774
825-851
2530-2553
3041-3068



POLYMERASE


PRRP1_DHVI1
RNA-DIRECTED RNA
DHORI VIRUS (STRAIN
247-264
275-299
337-359
377-394
569-594



POLYMERASE SUBUNIT P1
INDIAN/1313/61)


PRRP1_IAANN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/ANN ARBOR/6/60)


PRRP1_IABEI
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/BEIJING/11/56)


PRRP1_IADUN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/DUNEDIN/4/73)


PRRP1_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/GULL/MARYLAND/704/77)


PRRP1_IAHLO
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/EQUINE/LONDON/1416/73)


PRRP1_IAHTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/EQUINE/TENNESSEE/5/86)


PRRP1_IAKIE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/KIEV/59/79)


PRRP1_IAKOR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/KOREA/426/68)


PRRP1_IALE1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/LENINGRAD/134/57)


PRRP1_IALE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/LENINGRAD/134/17/57)


PRRP1_IALE3
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/LENINGRAD/134/47/57)


PRRP1_IAMAN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/MALLARD/NEW YORK/6750/78)


PRRP1_IAME8
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/MEMPHIS 8/88)


PRRP1_IANT6
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/NT/60/68)


PRRP1_IAPUE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/PUERTO RICO/8/34)


PRRP1_IASIN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/SINGAPORE/1/57)


PRRP1_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/TURKEY/MINNESOTA/833/80)


PRRP1_IAVI7
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
138-163
244-262



POLYMERASE SUBUNIT P1
A/VICTORIA/3/75)


PRRP1_IAWIL
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/WILSON-SMITH/33)


PRRP1_IAWIS
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/WISCONSIN/3523/88)


PRRP1_IAZH3
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/SWINE/HONG KONG/126/82)


PRRP1_IAZON
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/SWINE/ONTARIO/2/81)


PRRP1_IAZTF
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
244-262



POLYMERASE SUBUNIT P1
A/SWINE/TENNESSEE/26/77)


PRRP1_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
205-222



POLYMERASE SUBUNIT P1
B/ANN ARBOR/1/66




[COLD-ADAPTED])


PRRP1_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
205-222



POLYMERASE SUBUNIT P1
B/ANN ARBOR/1/66 [WILD-TYPE])


PRRP1_INBLE
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
205-222



POLYMERASE SUBUNIT P1
B/LEE/40)


PRRP1_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN
317-341
564-591



POLYMERASE SUBUNIT P1
C/JJ/50)


PRRP2_IAANN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/ANN ARBOR/6/60)


PRRP2_IADH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/DUCK/HOKKAIDO/8/80)


PRRP2_IAFPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/FOWL PLAGUE VIRUS/




ROSTOCK/34)


PRRP2_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/GULL/MARYLAND/704/77)


PRRP2_IAHLO
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/EQUINE/LONDON/1416/73)


PRRP2_IALE1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
(A/LENINGRAD/134/57)


PRRP2_IALE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/LENINGRAD/134/17/57)


PRRP2_IAP10
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/PINTAIL/ALBERTA/119/79)


PRRP2_IAPUE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/PUERTO RICO/8/34)


PRRP2_IARUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/RUDDY TURNSTONE/NEW




JERSEY/47/)


PRRP2_IASIN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/SINGAPORE/1/57)


PRRP2_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/TURKEY/MINNESOTA/833/80)


PRRP2_IAWIL
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
68-86
534-557



POLYMERASE SUBUNIT P2
A/WILSON-SMITH/33)


PRRP2_IAZH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/SWINE/HONG KONG/81/78)


PRRP2_IAZH3
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/SWINE/HONG KONG/126/82)


PRRP2_IAZ11
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
534-557



POLYMERASE SUBUNIT P2
A/SWINE/IOWA/15/30)


PRRP2_IAZTF
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
530-557



POLYMERASE SUBUNIT P2
A/SWINE/TENNESSEE/26/77)


PRRP2_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
32-54



POLYMERASE SUBUNIT P2
(B/ANN ARBOR/1/66




[COLD-ADAPTED])


PRRP2_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
32-54



POLYMERASE SUBUNIT P2
B/ANN ARBOR/1/66 [WILD-TYPE])


PRRP2_INBSI
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
32-54



POLYMERASE SUBUNIT P2
B/SINGAPORE/222/79)


PRRP2_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN
406-425



POLYMERASE SUBUNIT P2
C/JJ/50)


PRRP3_IAANN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/ANN ARBOR/6/60)


PRRP3_IABUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234



POLYMERASE SUBUNIT P3
A/BUDERIGAR/HOKKAIDO/1/77)


PRRP3_IACHI
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/CHILE/1/83)


PRRP3_IAFPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-567



POLYMERASE SUBUNIT P3
A/FOWL PLAGUE VIRUS/




ROSTOCK/34)


PRRP3_IAFPW
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/FOWL PLAGUE VIRUS/




WEYBRIDGE)


PRRP3_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/GULL/MARYLAND/704/77)


PRRP3_IAGUA
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/GULL/ASTRAKHAN/227/84)


PRRP3_IAHK6
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/EQUINE/KENTUCKY/2/86)


PRRP3_IAHLO
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/EQUINE/LONDON/1416/73)


PRRP3_IAHPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/EQUINE/PRAGUE/1/56)


PRRP3_IAKIE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
542-560



POLYMERASE SUBUNIT P3
A/KIEV/59/79)


PRRP3_IAKOR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/KOREA/426/68)


PRRP3_IALE1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/LENINGRAD/134/57)


PRRP3_IALE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/LENINGRAD/134/17/57)


PRRP3_IALE3
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/LENINGRAD/134/47/57)


PRRP3_IAMAN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/MALLARD/NEW YORK/6750/78)


PRRP3_IAME8
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN

219-234
542-560



POLYMERASE SUBUNIT P3


PRRP3_IANT6
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/NT/60/68)


PRRP3_IAPUE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
469-485
542-560



POLYMERASE SUBUNIT P3
A/PUERTO RICO/8/34)


PRRP3_IARUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/RUDDY TURNSTONE/




NEW JERSEY/47/)


PRRP3_IASE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/SEAL/MASSACHUSETTS/133/82)


PRRP3_IASIN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/SINGAPORE/1/57)


PRRP3_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/TURKEY/MINNESOTA/833/80)


PRRP3_IAVI7
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/VICTORIA/3/75)


PRRP3_IAWIL
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/WILSON-SMITH/33)


PRRP3_IAZI1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/SWINE/IOWA/15/30)


PRRP3_IAZTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN
219-234
542-560



POLYMERASE SUBUNIT P3
A/SWINE/TENNESSEE/24/77)


PRRP3_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
71-86
535-561



POLYMERASE SUBUNIT P3
B/ANN ARBOR/1/66




[COLD-ADAPTED])


PRRP3_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN
71-86
535-561



POLYMERASE SUBUNIT P3
B/ANN ARBOR/1/66 [WILD-TYPE])


PRRP3_INCBE
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN
74-96
552-571



POLYMERASE SUBUNIT P3
C/BERLIN/1/85)


PRRP3_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN
74-96
552-571



POLYMERASE SUBUNIT P3
C/JJ/50)


PRRP3_THOGV
RNA-DIRECTED RNA
THOGOTO VIRUS
85-101



POL SUBUNIT P3


PRRPA_CVH22
RNA-DIRECTED RNA
HUMAN CORONA VIRUS
82-104
410-436
858-878
1482-1507
1523-1542
1543-1568
2125-2149
2974-2992
3537-3559



POLYMERASE
(STRAIN 229E)


PRRPA_CVMJD
RNA-DIRECTED RNA
MURINE HEPATITIS VIRUS
440-467



POLYMERASE
(STRAIN DEFECTIVE JHM)


PRRPA_CVMJH
RNA-DIRECTED RNA
MURINE CORONA VIRUS MHV
917-938
1188-1215
1338-1354
1422-1449
1461-1480
1567-1585
1783-1806
2165-2192
2337-2354



POLYMERASE
(STRAIN JHM)





2470-2494
2660-2676
2944-2961
3229-3255
3405-3425
3933-3954


PRRPB_BEV
RNA-DIRECTED RNA
BERNE VIRUS
806-832
1509-1527
1738-1757
2137-2154



POLYMERASE


PRRPB_CVMA5
RNA-DIRECTED RNA
MURINE CORONA VIRUS MHV
385-412
1302-1324
1835-1850
2698-2723



POLYMERASE
(STRAIN A59)


PRRPB_CVMJH
RNA-DIRECTED RNA
MURINE CORONA VIRUS MHV
385-412
746-770
1302-1324
1833-1848
2696-2721



POLYMERASE
(STRAIN JHM)


PRRPB_CVPFS
RNA-DIRECTED RNA
PORCINE TRANSMISSIBLE
173-200
482-508



POLYMERASE
GASTROENTERITIS CORONA-




VIRUS (STRAI)


PRRPB_CVPR8
RNA-DIRECTED RNA
PORCINE RESPIRATORY
80-106



POLYMERASE
CORONAVIRUS (STRAIN




86/137004/BRITISH I)


PRRPB_IBVB
RNA-DIRECTED RNA
AVIAN INFECTIOUS BRONCHITIS
140-164
338-365
887-911
1335-1352
1654-1674



POLYMERASE
VIRUS (STRAIN BEAUDETTE)


PRRPL_BVT10
RNA-DIRECTED RNA
BLUETONGUE VIRUS
21-41
146-161



POLYMERASE
(SEROTYPE 10/ISOLATE USA)


PRRPL_BUNYW
RNA POLYMERASE
BUNYAMWERA VIRUS
78-104
303-324
440-465
1096-1116
1317-1338
1343-1365
1539-1554
1869-1886
2001-2027


PRRPL_EBOV
RNA-DIRECTED RNA
EBOLA VIRUS
16-31



POLYMERASE


PRRPL_HANTV
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118)
151-168
173-194
596-611
1561-1585
2081-2105


PRRPL_HRSV
RNA POLYMERASE BETA
HUMAN RESPIRATORY
3-19



SUBUNIT
SYNCYTIAL VIRUS


PRRPL_HRSVA
RNA POLYMERASE BETA
HUMAN RESPIRATORY
3-19
1181-1206
1425-1447
1633-1653
1929-1948
2018-2037



SUBUNIT
SYNCTIAL VIRUS (STRAIN A2)


PRRPL_MABVM
RNA-DIRECTED RNA
MARBURG VIRUS (STRAIN
15-30
144-169
223-248
317-341
471-492
546-569
931-946
1042-1067
1410-1436



POLYMERASE
MUSOKE)





1711-1731
1990-2017
2071-2094


PRRPL_MABVP
RNA-DIRECTED RNA
MARBURG VIRUS (STRAIN POPP)
15-30
144-169
223-248
471-492
546-569
931-946
1042-1067
1410-1436
1677-1696



POLYMERASE





1715-1731
1805-1832
1990-2017
2071-2094
2223-2246


PRRPL_MEASE
RNA POLYMERASE BETA
MEASLES VIRUS (STRAIN
285-312
617-632
998-1023
1160-1185
1279-1304
1920-1940
2038-2063



SUBUNIT
EDMONSTON)


PRRPL_MUMPM
RNA POLYMERASE BETA
MUMPS VIRUS (STRAIN
43-66
110-135
265-280
962-988
1100-1124
1132-1153
1601-1622
2128-2143



SUBUNIT
(MIYAHARA VACCINE)


PRRPL_NDVB
RNA POLYMERASE BETA
NEWCASTLE DISEASE VIRUS
704-724
1571-1592
1967-1994
2040-2067



SUBUNIT
(STRAIN BEAUDETTE C/45)


PRRPL_PI2HT
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 2 VIRUS
109-124
268-291
308-334
1309-1335
1562-1588
1985-2010
2215-2234



SUBUNIT
(STRAIN TOSHIBA)


PRRPL_PI3H4
RNA POLYMERASE BETA
HUMAN PARAINFLUENZA 3 VIRUS
172-193
304-330
844-861
885-900
1848-1868
2068-2084
2111-2134



SUBUNIT
(STRAIN NIH 47885)


PRRPL_PUUMH
RNA-DIRECTED RNA
PUUMALA VIRUS (STRAIN
173-194
596-611
1561-1585
1677-1696
2086-2110



POLYMERASE
HALLNAS B1)


PRRPL_RABVP
RNA POLYMERASE BETA
RABIES VIRUS (STRAIN PV)
266-286
542-563
741-762
1446-1461
1492-1517



SUBUNIT


PRRPL_RABVS
RNA POLYMERASE BETA
RABIES VIRUS (STRAIN SAD B19)
266-286
542-563
741-762
1446-1461
1492-1461
1492-1517
1744-1761



SUBUNIT


PRRPL_RDV
RNA-DIRECTED RNA
RICE DWARF VIRUS
10-27
533-560
680-697
1293-1316



POLYMERASE


PRRPL_RVFVZ
RNA-DIRECTED RNA
RIFT VALLEY FEVER VIRUS
582-609
2009-2035



POLYMERASE
(STRAIN ZH-548 M12)


PRRPL_SEND5
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN Z/
64-83
104-120
194-218
844-861
885-900
1405-1420
1844-1864
2107-2128



SUBUNIT
HOST MUTANTS)


PRRPL_SENDE
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN ENDERS)
14-38
664-681
705-720
1225-1240
1664-1684
1927-1948



SUBUNIT


PRRPL_SENDZ
RNA POLYMERASE BETA
SENDAI VIRUS (STRAIN Z)
64-83
104-120
194-218
844-861
885-900
1405-1420
1844-1864
2107-2128



SUBUNIT


PRRPL_SEOU8
RNA-DIRECTED RNA
SEOUL VIRUS (STRAIN 80-39)
151-168
173-194
394-419
596-611
1561-1585
2081-2105



POLYMERASE


PRRPL_SV5WR
RNA POLYMERASE BETA
SIMIAN VIRUS 5 (STRAIN
43-66
108-124
263-289
1094-1118
1125-1147
1558-1580
2117-2137



SUBUNIT
21004-WR)


PRRPL_SYNV
RNA POLYMERASE BETA
SONCHUS YELLOW NET VIRUS
126-146
391-406
605-627
704-731
863-883
886-911
1484-1510
1776-1792



SUBUNIT


PRRPL_TSWVB
RNA-DIRECTED RNA
TOMATO SPOTTED WILT VIRUS
958-974
1385-1410
1778-1800
2609-2627
2678-2702



POLYMERASE
(BRAZILIAN ISOLATE




CPNH1/BR-01)


PRRPL_UUK
RNA POLYMERASE
UUKUNIEMI VIRUS
698-714
923-948
1404-1431
1570-1591
2060-2081


PRRPL_VSVJH
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS
156-183
312-339
903-928
1956-1982
2080-2097



SUBUNIT
(SEROTYPE NEW JERSEY/




STRAIN HA)


PRRPL_VSVJO
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS
156-183
312-339
1956-1982
2080-2101



SUBUNIT
(SEROTYPE NEW JERSEY/




STRAIN OG)


PRRPL_VSVSJ
RNA POLYMERASE BETA
VESICULAR STOMATITIS VIRUS
1956-1982



SUBUNIT
(STRAIN SAN JUAN)


PRRPO_ACLSV
RNA-DIRECTED RNA
APPLE CHLOROTIC LEAF
226-247
1036-1054
1132-1155
1775-1201



POLYMERASE
SPOT VIRUS


PRRPO_BWYVF
PUTATIVE RNA-DIRECTED
BEET WESTERN YELLOWS VIRUS
299-326



RNA POL
(ISOLATE FL-1)


PRRPO_BYDV1
PUTATIVE RNA-DIRECTED
BARLEY YELLOW DWARF VIRUS
359-386
391-416
505-532



RNA POL
(ISOLATE MAV-PS1)


PRRPO_BYDVP
PUTATIVE RNA-DIRECTED
BARLEY YELLOW DWARF VIRUS
359-386
391-416
505-532



RNA POL
(ISOLATE PAV)


PRRPO_BYDVR
PUTATIVE RNA-DIRECTED
BARLEY YELLOW DWARF VIRUS
359-386
391-416
505-532



RNA POL
(ISOLATE P-PAV)


PRRPO_CARMV
PROBABLE RNA-DIRECTED
CARNATION MOTTLE VIRUS
4-30
92-107
327-350
818-833



RNA POL


PRRPO_CGMVS
PUTATIVE RNA-DIRECTED
CUCUMBER GREEN MOTTLE
443-466
574-591
1017-1032
1523-1539



RNA POL
MOSAIC VIRUS (WATERMELON




STRAIN S)


PRRPO_CNV
PROBABLE RNA-DIRECTED
CUCUMBER NECROSIS VIRUS
277-300
345-371
470-494



RNA POL


PRRPO_CRV
PROBABLE RNA-DIRECTED
CYMBIDIUM RINGSPOT VIRUS
96-111
345-371
470-494



RNA POL


PRRPO_IPNVJ
PUTATIVE RNA-DIRECTED
INFECTIOUS PANCREATIC
221-238



RNA POL
NECROSIS VIRUS (SEROTYPE




JASPER)


PRRPO_LYCVA
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGI-
35-52
597-613
659-682
988-1008
1234-1258
1770-1795
2077-2099




TIS VIRUS (STRAIN ARMSTRONG)


PRRPO_LYCVW
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGI-
35-52




TIS VIRUS (STRAIN WE)


PRRPO_MCMV
PROBABLE RNA-DIRECTED
MAIZE CHLOROTIC MOTTLE
16-41
101-127
573-599



RNA POL
VIRUS


PRRPO_PEAMV
RNA-DIRECTED RNA
PEA ENATION MOSAIC VIRUS
144-161
316-336
431-456
558-574



POLYMERASE


PRRPO_PLRV1
PUTATIVE RNA-DIRECTED
POTATO LEAFROLL VIRUS
331-358
576-600



RNA POL
(STRAIN 1)


PRRPO_PLRVW
PUTATIVE RNA-DIRECTED
POTATO LEAFROLL VIRUS
331-358
576-600



RNA POL
(STRAIN WAGENINGEN)


PRRPO_PPMVS
PUTATIVE RNA-DIRECTED
PEPPER MILD MOTTLE VIRUS
375-395
702-726
1069-1096
1491-1507



RNA POL
(STRAIN SPAIN)


PRRPO_RCNMV
PUTATIVE RNA-DIRECTED
RED CLOVER NECROTIC
278-300



RNA POL
MOSAIC VIRUS


PRRPO_REOVJ
RNA-DIRECTED RNA
REOVIRUS (TYPE 2/STRAIN
161-176



POLYMERASE
D5/JONES)


PRRPO_REOVL
RNA-DIRECTED RNA
REOVIRUS (TYPE 1/STRAIN LANG)
161-176



POLYMERASE


PRRPO_ROTBR
RNA-DIRECTED RNA
BOVINE ROTAVIRUS (STRAIN RF)
132-156
247-269
844-861
904-921
942-967
1027-1046



SUBUNIT VP1


PRRPO_ROTBU
RNA-DIRECTED RNA
BOVINE ROTAVIRUS (STRAIN UK)
132-156
247-269
844-861
904-921
942-967
1027-1046



SUBUNIT VP1


PRRPO_ROTPC
RNA-DIRECTED RNA
PORCINE ROTAVIRUS
198-223
254-274
318-337
769-784
856-878
936-952



SUBUNIT VP1
(GROUP C/STRAIN COWDEN)


PRRPO_ROTPG
RNA-DIRECTED RNA
PORCINE ROTAVIRUS
32-53
57-72
132-156
247-269
844-861
904-921
942-967
1027-1046



SUBUNIT VP1
(STRAIN GOTTFRIED)


PRRPO_ROTS1
RNA-DIRECTED RNA
SIMIAN 11 ROTAVIRUS
132-156
247-269
844-861
904-921
942-967
1027-1046



SUBUNIT VP1
(STRAIN SA11)


PRRPO_SBMV
PROBABLE RNA-DIRECTED
SOUTHERN BEAN MOSAIC VIRUS
38-64
122-143
188-206
287-302
444-466
625-643
825-846



RNA POL


PRRPO_TACV
RNA POLYMERASE
TACARIBE VIRUS
88-107
369-389
1281-1301
1676-1692
2019-2046


PRRPO_TBSVC
PUTATIVE RNA-DIRECTED
TOMATO BUSHY STUNT VIRUS
277-300
345-371
470-494



RNA POL
(STRAIN CHERRY)


PRRPO_TCV
PUTATIVE RNA-DIRECTED
TURNIP CRINKLE VIRUS
31-58
241-263



RNA POL


PRRPO_TMGMV
PUTATIVE RNA-DIRECTED
TOBACCO MILD GREEN MOSAIC
209-231
1085-1100



RNA POL
VIRUS (TMV STRAIN U2)


PRRPO_TMV
PUTATIVE RNA-DIRECTED
TOBACCO MOSAIC VIRUS
700-724
1090-1105
1587-1610



RNA POL
(VULGARE)


PRRPO_TMVKR
PUTATIVE RNA-DIRECTED
TOBACCO MOSAIC VIRUS
700-724
1090-1105
1587-1610



RNA POL
(STRAIN KOREAN)


PRRPO_TMVTO
PUTATIVE RNA-DIRECTED
TOBACCO MOSAIC VIRUS
700-724
1090-1105
1151-1170
1587-1610



RNA POL
(STRAIN TOMATO/L)


PRRPO_TNVA
RNA-DIRECTED RNA
TOBACCO NECROSIS VIRUS
113-135



POLYMERASE
(STRAIN A)


PRRPO_TNVD
RNA-DIRECTED RNA
TOBACCO NECROSIS VIRUS
5-26



POLYMERASE
(STRAIN D)


PRRPP_CHAV
RNA POLYMERASE ALPHA
CHANDIPURA VIRUS (STRAIN
124-146



SUBUNIT
1653514)


PRRPP_MUMP1
RNA POLYMERASE ALPHA
MUMPS VIRUS (STRAIN SBL-1)
211-238



SUBUNIT


PRRPP_MUMPE
RNA POLYMERASE ALPHA
MUMPS VIRUS (STRAIN ENDERS)
212-239



SUBUNIT


PRRPP_MUMPM
RNA POLYMERASE ALPHA
MUMPS VIRUS (STRAIN
212-239



SUBUNIT
MIYAHARA VACCINE)


PRRPP_NDVA
RNA POLYMERASE ALPHA
NEWCASTLE DISEASE VIRUS
256-276



SUBUNIT
(STRAIN AUSTRALIA-




VICTORIA/32)


PRRPP_NDVB
RNA POLYMERASE ALPHA
NEWCASTLE DISEASE VIRUS
256-276



SUBUNIT
(STRAIN BEAUDETTE C/45)


PRRPP_PI2H
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2 VIRUS
216-243



SUBUNIT


PRRPP_PI2HT
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 2 VIRUS
216-243



SUBUNIT
(STRAIN TOSHIBA)


PRRPP_PI4HA
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 4A
220-247



SUBUNIT
VIRUS (STRAIN TOSHIBA)


PRRPP_PI4HB
RNA POLYMERASE ALPHA
HUMAN PARAINFLUENZA 4B
220-247



SUBUNIT
VIRUS (STRAIN 68-333)


PRRPP_PIRYV
RNA POLYMERASE ALPHA
PIRY VIRUS
134-161



SUBUNIT


PRRPP_RABVA
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN AVO1)
8-32



SUBUNIT


PRRPP_RABVC
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN CVS-11)
8-32



SUBUNIT


PRRPP_RABVE
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN ERA),
8-32
216-237



SUBUNIT
AND (STRAIN PM)


PRRPP_RABVP
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN PV)
8-32
216-237



SUBUNIT


PRRPP_RABV5
RNA POLYMERASE ALPHA
RABIES VIRUS (STRAIN SAD B19)
8-32
216-237



SUBUNIT


PRRPP_SV5
RNA POLYMERASE ALPHA
SIMINA VIRUS 5 (STRAIN W3)
199-226
282-301



SUBUNIT


PRRPP_VSVJO
RNA POLYMERASE ALPHA
VESICULAR STOMATITIS VIRUS
197-223



SUBUNIT
(SEROTYPE NEW JERSEY/




STRAIN OG)


PS27R_ASFB7
S273R PROTEIN
AFRICAN SWINE FEVER VIRUS
196-218




(STRAIN BA71V)


PSODC_VACCC
SUPEROXIDE DISMUTASE
VACCINIA VIRUS (STRAIN
19-40



LIKE PROTEIN
COPENHAGEN)


PSODC_VACCV
SUPEROXIDE DISMUTASE
VACCINIA VIRUS (STRAIN WR)
19-40



LIKE PROTEIN


PSODC_VARV
SUPEROXIDE DISMUTASE
VARIOLA VIRUS
19-40



LIKE PROTEIN


PSPHR_AMEPV
SHEROIDIN
AMSACTA MOOREI
58-79
627-646




ENTOMOMPOXVIRUS


PSPHR_CBEPV
SHEROIDIN PRECURSOR
CHORISTONEURA BIENNIS
177-201




ENTOMOPOXVIRUS


PSPI1_MYXVL
SERPIN 1
MYXOMA VIRUS (STRAIN
62-80
217-243




LAUSANNE)


PSWFA_SPVKA
SWF8A PROTEIN
SWINEPOX VIRUS (STRAIN
61-83




KASZA)


PTALA_BFDV
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING
354-369




DISEASE VIRUS


PTALA_POVBA
LARGE T ANTIGEN
POLYOMAVIRUS BK (STRAIN AS)
202-224
429-444


PTALA_POVBK
LARGE T ANTIGEN
POLYOMAVIRUS BK
202-224
429-444


PTALA_POVBO
LARGE T ANTIGEN
BOVINE POLYOMAVIRUS
385-400


PTALA_POVHA
LARGE T ANTIGEN
HAMSTER POLYOMAVIRUS
43-69
549-564


PTALA_POVJC
LARGE T ANTIGEN
POLYOMAVIRUS VIRUS JC
201-223
428-443


PTATAL_POVLY
LARGE T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
43-69
516-542


PTALA_POVM3
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS
576-591




(STRAIN 3)


PTALA_POVMA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS
574-589




(STRAIN A2)


PTALA_POVMC
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN
571-586




CRAWFORD SMALL-PLAQUE)


PTALA_POVMK
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS
173-191
278-304
446-472




(STRAIN KILHAM)


PTALA_SV40
LARGE T ANTIGEN
SIMIAN VIRUS 40 (SV40)
200-222
427-442


PTAMI_POVHA
MIDDLE T ANTIGEN
HAMSTER POLYOMAVIRUS
43-69


PTASM_POVHA
SMALL T ANTIGEN
HAMSTER POLYOMAVIRUS
43-69


PTASM_POVLY
SMALL T ANTIGEN
LYMPHOTROPIC POLOMAVIRUS
43-69


PTASM_POVMK
SMALL T ANTIGEN
MOUSE POLYOMAVIRUS
43-69
67-89




(STRAIN KILHAM)


PTATR_NPVAC
TRANS-ACTIVATING TRANS
AUTOGRAPHA CALIFORNICA
406-431



REG PROTEIN
NUCLEAR POLYHEDROSIS VIRUS


PTATR_NPVBM
TRANS-ACTIVATING TRANS
BOMBYX MORI NUCLEAR
411-436



REG PROTEIN
POLYHEDROSIS VIRUS


PTATR_NPVOP
TRANS-ACTIVATING TRANS
ORGYIA PSEUDOTSUGATA
389-414



REG PROTEIN
MULTICAPSID POLYHEDROSIS




VIRUS


PTAT_BIV06
TRANS-ACTIVATING TRANS
BOVINE IMMUNODEFICIENCY
44-59



REG PROTEIN
VIRUS (ISOLATE 106)


PTAT_BIV27
TRANS-ACTIVATING TRANS
BOVINE IMMUNODEFICIENCY
44-59



REG PROTEIN
VIRUS (ISOLATE 127)


PTAT_HTL1A
TRANS-ACTIVATING TRANS
HUMAN T-CELL LEUKEMIA VIRUS
192-210



REG PROTEIN
TYPE 1 (STRAIN ATK)


PTAT_HTL1C
TRANS-ACTIVATING TRANS
HUMAN T-CELL LEUKEMIA VIRUS
192-210



REG PROTEIN
TYPE 1 (CARIBBEAN ISOLATE)


PTAT_HV1U4
TAT PROTEIN
HUMAN IMMUNODEFICIENCY
18-43




VIRUS TYPE 1 (STRAIN




UNANDAN/ISO


PTCB_FLV
T-CELL RECEPTOR BETA
FELINE LEUKEMIA VIRUS
6-22
98-118



CHAIN PRECURSOR


PTEGP_HSVEB
PROBABLE TEGUMENT
EQUINE HERPESVIRUS TYPE 1
101-118



PHOSPHOPROTEIN
(STRAIN AB4P)


PTEGP_HSVEK
TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1
101-118




(STRAIN KENTUCKY A)


PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS
143-166
767-789
814-835
1052-1075
1194-1220
1469-1496
1869-1893
3061-3077
3102-3126




(STRAIN B95-8)


PTEGU_HCMVA
PROBABLE LARGE
HUMAN CYTOMEGALOVIRUS
342-358
644-668
1061-1077
1307-1322
1323-1345
1419-1446
1509-1536
1957-1974
2199-2221



TEGUMENT PROTEIN
(STRAIN AD169)


PTEGU_HSV11
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
12-27
623-646
1732-1759




(TYPE 1/STRAIN 17)


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
131-152
345-365
615-636
1027-1043
1308-1328
1562-1579




(TYPE 6/STRAIN GS)


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1
432-456
559-582
1072-1099
1107-1132
1618-1640
1764-1791
2263-2285




(STRAIN AB4P)


PTEGU_HSVSA
PROBABLE LARGE
HERPESVIRUS SAIMIRI
467-491
714-737
989-1008
1121-1137
1155-1174
1177-1193
1503-1525
1607-1622
1898-1915



TEGUMENT PROTEIN
(STRAIN 11)





2421-2349


PTEGU_VZVD
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS
433-456
494-511
711-728
801-823
895-920
1013-1034
1360-1376
1632-1657
1780-1807




(STRAIN DUMAS)





2008-2029
2270-2287
2694-2711


PTERM_ADE02
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 2
63-80
593-616


PTERM_ADE05
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 5
63-80
593-616


PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
63-80
580-603


PTERM_ADE12
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 12
46-63
334-350
546-569


PTOP2_ASFB7
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS
119-146
686-707




(STRAIN BA71V)


PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS
119-146
685-706




(ISOLATE MALAWI LIL 20/1)


PTR14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
139-165



TRL14
(STRAIN AD169)


PTREL_AVIRE
REL TRANSFORMING
AVIAN RETICULOENDOTHELIOSIS
56-74



PROTEIN
VIRUS


PTYSY_VZVD
THYMIDYLATE SYNTHASE
VARICELLA-ZOSTER VIRUS
11-29




(STRAIN DUMAS)


PU15R_HSV6U
POSSIBLE GANCICLOVIR
HERPES SIMPLEX VIRUS
400-415



KINASE
(TYPE 6/STRAIN UGANDA-1102)


PU2L_HSV6U
PROTEIN 2L
HERPES SIMPLEX VIRUS
4-27




(TYPE 6/STRAIN UGANDA-1102)


PUDPE_NPVAC
UDP-GLUCOSYLTRANSFER-
AUTOGRAPHA CALIFORNICA
452-477



ABLE PRECURSOR
NUCLEAR POLYHEDROSIS VIRUS


PUL02_HCMVA
HYPOTHETICAL PROTEIN UL2
HUMAN CYTOMEGALOVIRUS
25-49




(STRAIN AD169)


PUL05_HCMVA
HYPOTHETICAL PROTEIN UL2
HUMAN CYTOMEGALOVIRUS
11-37




(STRAIN AD169)


PUL06_EBV
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS
253-268




(STRAIN B95-8)


PUL06_HCMVA
HYPOTHETICAL PROTEIN UL6
HUMAN CYTOMEGALOVIRUS
191-208




(STRAIN AD169)


PUL06_HSV11
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS
404-429




(TYPE 1/STRAIN 17)


PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1
437-461




(STRAIN AB4P)


PUL06_HSVSA
VIRIION GENE 43 PROTEIN
HERPES VIRUS SAIMIRI
44-60




(STRAIN 11)


PUL07_EBV
BBRF2 PROTEIN
EPSTEIN-BARR VIRUS
127-149




(STRAIN B95-8)


PUL07_HCMVA
HYPOTHETICAL PROTEIN UL7
HUMAN CYTOMEGALOVIRUS
88-108
186-209




(STRAIN AD169)


PUL07_HSV11
PROTEIN UL7
HERPES SIMPLEX VIRUS
177-200




(TYPE 1/STRAIN 17)


PUL07_HSVEB
GENE 55 PROTEIN
EQUINE HERPES VIRUS TYPE 1
11-32




(STRAIN AB4P)


PUL07_HSVSA
GENE 42 PROTEIN
HERPESVIRUS SAIMIRI
44-61




(STRAIN 11)


PUL07_VZVD
GENE 53 PROTEIN
VARICELLA-ZOSTER VIRUS
158-176
202-224




(STRAIN DUMAS)


PUL08_HSV11
PROTEIN UL8
HERPES SIMPLEX VIRUS
514-538
705-726




(TYPE 1/STRAIN 17)


PUL08_VZVD
GENE 52 PROTEIN
VARICELLA-ZOSTER VIRUS
228-255
593-616




(STRAIN DUMAS)


PUL09_HSV11
ORIGIN OF REPLICATION
HERPES SIMPLEX VIRUS
564-584



BINDING PROTEIN
(TYPE 1/STRAIN 17)


PUL09_HSVEB
ORIGIN OF REPLICATION
EQUINE HERPESVIRUS TYPE 1
171-196
612-628



BINDING PROTEIN
(STRAIN AB4P)


PUL09_VZVD
ORIGIN OF REPICATION
VARICELLA-ZOSTER VIRUS
68-92
168-190
484-508



BINDING PROTEIN
(STRAIN DUMAS)


PUL11_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
223-247



UL11
(STRAIN AD169)


PUL13_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
449-467



UL13
(STRAIN AD169)


PUL14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
280-299



UL14
(STRAIN AD169)


PUL14_HSV11
HYPOTHETICAL UL14
HERPES SIMPLEX VIRUS
96-116



PROTEIN
(TYPE 1/STRAIN 17)


PUL14_HSVEB
HYPOTHETICAL GENE 48
EQUINE HERPESVIRUS TYPE 1
100-127



PROTEIN
(STRAIN AB4P)


PUL16_HSV11
PROTEIN UL16
HERPES SIMPLEX VIRUS
22-49




(TYPE 1/STRAIN 17)


PUL16_HSVEB
GENE 46 PROTEIN
EQUINE HERPESVIRUS TYPE 1
26-43
98-119
324-339




(STRAIN AB4P)


PUL16_HSVSA
GENE 33 PROTEIN
HERPESVIRUS SAIMIRI
69-87
278-295




(STRAIN 11)


PUL16_VZVD
GENE 44 PROTEIN
VARICELLA-ZOSTER VIRUS
65-80
317-332




(STRAIN DUMAS)


PUL17_EBV
PROTEIN BGLF1
EPSTEIN-BARR VIRUS
373-393




(STRAIN B95-8)


PUL17_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
60-82



UL17
(STRAIN AD169)


PUL17_HSV11
PROTEIN UL17
HERPES SIMPLEX VIRUS
156-181




(TYPE 1/STRAIN 17)


PUL17_HSVSA
GENE 32 PROTEIN
HERPESVIRUS SAIMIRI
94-118
348-370




(STRAIN 11)


PUL19_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEAGLOVIRUS
61-85



UL19
(STRAIN AD169)


PUL20_PRVN3
UL20 MEMBRANE PROTEIN
PSEUDORABIES VIRUS
54-76



HOMOLOG
(STRAIN NIA-3)


PUL20_VZVD
GENE 39 MEMBRANE
VARICELLA-ZOSTER VIRUS
201-224



PROTEIN
(STRAIN DUMAS)


PUL21_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
91-110



UL21
(STRAIN AD169)


PUL21_HSV11
PROTEIN UL21
HERPES SIMPLEX VIRUS
98-114
130-146




(TYPE 1/STRAIN 17)


PUL21_USV1E
PROTEIN UL21
HERPES SIMPLEX VIRUS
98-114
130-146




(TYPE 1/STRAIN HFEM)


PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1
119-142
294-321
379-403
412-427




(STRAIN AB4P)


PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS
270-293
300-327




(STRAIN DUMAS)


PUL22_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
44-67



UL22
(STRAIN AD169)


PUL24_EBV
PROTEIN BXRF1
EPSTEIN-BARR VIRUS
134-155




(STRAIN B95-8)


PUL24_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
206-222



UL24
(STRAIN AD169)


PUL24_HSV11
PROTEIN UL24
HERPES SIMPLEX VIRUS
147-166




(TYPE 1/STRAIN 17)


PUL24_ILTVT
PROTEIN UL24
INFECTIOUS LARYNGOTRACHEI-
158-179



HOMOLOG
TIS VIRUS (STRAIN THORNE V882)


PUL25_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
484-500



UL25
(STRAIN AD169)


PUL25_HSV11
VIRION PROTEIN UL25
HERPES SIMPLEX VIRUS
86-101




(TYPE 1/STRAIN 17)


PUL25_HSVEB
VIRION PROTEIN UL25
EQUINE HERPESVIRUS TYPE 1
89-104
130-147




(STRAIN AB4P)


PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI
244-265
344-368




(STRAIN 11)


PUL25_ILTVT
64 1 KD VIRION PROTEIN
INFECTIOUS LARYNGOTRACHEI-
270-287
316-336




TIS VIRUS (STRAIN THRONE V882)


PUL27_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
307-324
486-507



UL27
(STRAIN AD169)


PUL29_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
239-266



UL29
(STRAIN AD169)


PUL30_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
9-32



UL30
(STRAIN AD169)


PUL31_EBV
PROTEIN BFLF2
EPSTEIN-BARR VIRUS
273-296




(STRAIN B95-8)


PUL31_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
410-437
582-602



UL31
(STRAIN AD169)


PUL31_HSV11
PROTEIN UL31
HERPES SIMPLEX VIRUS
95-116




(TYPE 1/STRAIN 17)


PUL31_HSVEB
GENE 29 PROTEIN
EQUINE HERPESVIRUS TYPE 1
104-125
288-309




(STRAIN AB4P)


PUL31_HSVSA
GENE 69 PROTEIN
HERPESVIRUS SAIMIRI
145-161
163-190




(STRAIN 11)


PUL31_VZVD
GENE 27 PROTEIN
VARICELLA-ZOSTER VIRUS
117-138
295-316




(STRAIN DUMAS)


PUL32_HSV11
PROBABLE MAJOR ENV
HERPES SIMPLEX VIRUS
127-143
564-585



GLYCOPROTEIN UL32
(TYPE 1/STRAIN 17)


PUL32_HSVEB
MAJOR ENVELOPE
EQUINE HERPESVIRUS TYPE 1
81-108



GLYCOPROTEIN 300
(STRAIN AB4P)


PUL32_VZVD
PROBABLE MAJOR ENV
VARICELLA-ZOSTER VIRUS
553-574



GLYCOPROTEIN 26
(STRAIN DUMAS)


PUL33_HCMVA
G-PROTEIN COUPLED REC
HUMAN CYTOMEGALOVIRUS
76-102



HOMOLOG UL33
(STRAIN AD169)


PUL34_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
214-232
297-321



UL34
(STRAIN AD169)


PUL34_HSV11
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS
251-275




(TYPE 1/STRAIN 17)


PUL34_HSVEB
VIRION GENE 26 PROTEIN
EQUINE HERPESVIRUS TYPE 1
249-264




(STRAIN AB4P)


PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI
207-229




(STRAIN 11)


PUL34_VZVD
VIRION GENE 24 PROTEIN
VARICELLA-ZOSTER VIRUS
244-266




(STRAIN DUMAS)


PUL35_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
229-252
310-329
331-348



UL35
(STRAIN AD169)


PUL36_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
143-168
387-410



UL36
(STRAIN AD169)


PUL37_EBV
PROTEIN BOLF1
EPSTEIN-BARR VIRUS
21-36
135-155
707-730
984-1004




(STRAIN B95-8)


PUL37_HSV11
PROTEIN UL37
HERPES SIMPLEX VIRUS
229-252
262-277
445-467
665-681
758-777
925-947
1009-1028




(TYPE 1/STRAIN 17)


PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1
414-440
491-510
664-690
778-805
901-919




(STRAIN AB4P)


PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SIAMIRI
5-20




(STRAIN 11)


PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS
4-19
104-124
140-165
168-191
196-212
229-244
248-269
670-694
776-803




(STRAIN DUMAS)





904-923


PUL38_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
199-220



UL38
(STRAIN AD169)


PUL40_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
18-35



UL40
(STRAIN AD169)


PUL41_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
15-31
116-134



UL41
(STRAIN AD169)


PUL43_HSV11
MEMBRANE PROTEIN UL43
HERPES SIMPLEX VIRUS
41-63
139-160
343-365
394-421




(TYPE 1/STRAIN 17)


PUL43_HSVEB
GENE 17 MEMBRANE
EQUINE HERPESVIRUS TYPE 1
34-60
86-107



PROTEIN
(STRAIN AB4P)


PUL43_VZVD
GENE 17 MEMBRANE
VARICELLA-ZOSTER VIRUS
88-114
127-146
160-180
277-299
374-400



PROTEIN
(STRAIN DUMAS)


PUL45_HSV11
PROTEIN UL45
HERPES SIMPLEX VIRUS
25-46




(TYPE 1/STRAIN 17)


PUL45_HSV1K
PROTEIN UL45
HERPES SIMPLEX VIRUS
25-46




(TYPE 1/STRAIN KOS)


PUL45_HSV1M
PROTEIN UL45
HERPES SIMPLEX VIRUS
25-46




(TYPE 1/STRAIN MP)


PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS
193-218
438-464
533-556
614-640
741-766




(STRAIN AD169)


PUL47_HSV11
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS
404-425




(TYPE 1/STRAIN 17)


PUL47_HSV1F
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS
404-425




(TYPE 1/STRAIN 17)


PUL47_HSVBP
80 7 KD ALPHA
BOVINE HERPESVIRUS TYPE 1
681-702



TRANS-INDUCING PROTEIN


PUL47_HSVE4
97 KD ALPHA
EQUINE HERPESVIRUS TYPE 4
580-601



TRANS-INDUCING PROTEIN


PUL47_HSVEB
97 KD ALPHA
EQUINE HERPESVIRUS TYPE 1
587-608



TRANS-INDUCING PROTEIN
(STRAIN AB4P)


PUL47_VZVD
ALPHA TRANS-INDUCING
VARICELLA-ZOSTER VIRUS
42-58
608-627



FACTOR 91 8 KD PROTEIN
(STRAIN DUMAS)


PUL49_EBV
HYPOTHETICAL BFRF2
EPSTEIN-BARR VIRUS
336-358



PROTEIN
(STRAIN B95-8)


PUL49_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
248-264
528-543



UL49
(STRAIN AD169)


PUL49_HSV11
TEGUMENT PROTEIN UL49
HERPES SIMPLEX VIRUS
226-252




(TYPE 1/STRAIN 17)


PUL49_HSVSA
HYPOTHETICAL GENE 66
HERPESVIRUS SAIMIRI
232-253



PROTEIN
(STRAIN 11)


PUL50_HCMVA
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS
96-119




(STRAIN AD169)


PUL51_HSV11
PROTEIN UL51
HERPES SIMPLEX VIRUS
49-66




(TYPE 1/STRAIN 17)


PUL51_HSVE4
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 4
169-190




(STRAIN 1942)


PUL51_HSVEB
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 1
166-189




(STRAIN AB4P)


PUL51_VZVD
GENE 7 PROTEIN
VARICELLA-ZOSTER VIRUS
30-49




(STRAIN DUMAS)


PUL52_EBV
PROBABLE DNA
EPSTEIN-BARR VIRUS
44-59



REPLICATION PROTEIN BSLF1
(STRAIN B95-8)


PUL52_HSV11
DNA REPLICATION
HERPES SIMPLEX VIRUS
17-37
65-91



PROTEIN UL52
(TYPE 1/STRAIN 17)


PUL52_HSVE4
DNA REPLICATION
EQUINE HERPESVIRUS TYPE 4
8-27



PROTEIN UL52
(STRAIN 1942)


PUL52_HSVEB
DNA REPLICATION
EQUINE HERPESVIRUS TYPE 1
8-27
135-159
316-337



PROTEIN UL52
(STRAIN AD4P)


PUL52_HSVSA
PROBABLE DNA
HERPESVIRUS SAIMIRI
489-508
586-605



REPLICATION GENE 56
(STRAIN 11)



PROTEIN


PUL52_VZVD
PROBABLE DNA
VARICELLA-ZOSTER VIRUS
446-466
645-670



REPLICATION GENE 6
(STRAIN DUMAS)



PROTEIN


PUL53_HCMVA
PROTEIN UL53
HUMAN CYTOMEGALOVIRUS
173-188




(STRAIN AD169)


PUL53_HSV6U
UL53 PROTEIN HOMOLOG
HERPES SIMPLEX VIRUS
64-80




(TYPE 6/STRAIN UGANDA-1102)


PUL60_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
120-141



UL60
(STRAIN AD169)


PUL62_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
62-84
178-205



UL62
(STRAIN AD169)


PUL68_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
87-107



UL68
(STRAIN AD169)


PUL70_HCMVA
PROBABLE DNA
HUMAN CYTOMEGALOVIRUS
225-252
409-430
499-514
626-645
770-793



REPLICATION PROTEIN UL70
(STRAIN AD169)


PUL71_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
234-250



UL71
(STRAIN AD169)


PUL73_EBV
HYPOTHETICAL BLRF1
EPSTEIN-BARR VIRUS
62-87



PROTEIN
(STRAIN B95-8)


PUL73_HSVSA
HYPOTHETICAL GENE 53
HERPESVIRUS SAIMIRI
51-73



PROTEIN
(STRAIN 11)


PUL74_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
12-32



UL74
(STRAIN AD169)


PUL77_HCMVA
VIRION PROTEIN UL77
HUMAN CYTOMEGALOVIRUS
268-291
607-628




(STRAIN AD169)


PUL78_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
71-90
190-205



UL78
(STRAIN AD169)


PUL79_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
40-58



UL79
(STRAIN AD169)


PUL84_HCMVA
65 KD EARLY
HUMAN CYTOMEGALOVIRUS
100-116



NONSTRUCTURAL PROTEIN
(STRAIN AD169)


PUL84_HCMVT
65 KD EARLY
HUMAN CYTOMEGALOVIRUS
100-116



NONSTRUCTURAL PROTEIN
(STRAIN TOWNE)


PUL87_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS
406-422
530-557



B(C)RF1
(STRAIN B95-8)


PUL87_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
205-231
309-335
606-628
633-653
757-781



UL87
(STRAIN AD169)


PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS
301-322
507-529




(TYPE 6/STRAIN UGANDA-1102)


PUL87_HSVSA
HYPOTHETICAL GENE 24
HERPESVIRUS SAIMIRI
365-387
402-422
579-595



PROTEIN
(STRAIN 11)


PUL88_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
173-191
252-279



UL88
(STRAIN AD169)


PUL88_HSV6U
HYPOTHETICAL PROTEIN 6R
HERPES SIMPLEX VIRUS
150-173




(TYPE 6/STRAIN UGANDA-1102)


PUL90_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
35-50



UL90
(STRAIN AD169)


PUL91_HSV6U
HYPOTHETICAL PROTEIN 8R
HERPES SIMPLEX VIRUS
43-65




(TYPE 6/STRAIN UGANDA-1102)


PUL92_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
76-99



UL92
(STRAIN AD169)


PUL92_HSV6U
HYPOTHETICAL PROTEIN 9R
HERPES SIMPLEX VIRUS
36-55
100-119




(TYPE 6/STRAIN UGANDA-1102)


PUL94_HCMVA
PROTEIN UL94
HUMAN CYTOMEGALOVIRUS
49-70


PUL95_EBV
HYPOTHETICAL PROTEIN
EPSTEIN-BARR VIRUS
201-223



BGLF3
(STRAIN B95-8)


PUL95_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
508-526



UL95
(STRAIN AD169)


PUL95_HSV6U
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS
9-30
328-346




(TYPE 6/STRAIN UGANDA-1102)


PUL95_HSVSA
HYPOTHETICAL GENE 34
HERPESVIRUS SAIMIRI
187-209



PROTEIN
(STRAIN 11)


PUL97_HCMVA
GANCICLOVIR KINASE
HUMAN CYTOMEGALOVIRUS
208-228
541-567




(STRAIN AD169)


PULA2_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
168-185



UL102
(STRAIN AD169)


PULA3_HCMVA
PROTEIN UL103
HUMAN CYTOMEGALOVIRUS
26-47




(STRAIN AD169)


PULA4_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS
215-235
423-450




(STRAIN AD169)


PULA8_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
93-118



UL108
(STRAIN AD169)


PULB1_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
60-81



UL111
(STRAIN AD169)


PULB3_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
298-319



UL113
(STRAIN AD169)


PULB7_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
178-195



UL117
(STRAIN AD169)


PULB8_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
103-130



UL118
(STRAIN AD169)


PULC1_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
129-153



UL121
(STRAIN AD169)


PULD2_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
4-22



UL132
(STRAIN AD169)


PUNG_FOWP1
URACIL-DNA GLUCOSYLASE
FOWLPOX VIRUS (STRAIN FP-1)
12-37


PUNG_HSVEB
URACIL-DNA GLUCOSYLASE
EQUINE HERPESVIRUS TYPE 1
224-250




(STRAIN AB4P)


PUNG_VACCC
URACIL-DNA GLUCOSYLASE
VACCINIA VIRUS (STRAIN
82-103




COPENHAGEN)


PUNG_VACCV
URACIL-DNA GLUCOSYLASE
VACCINIA VIRUS (STRAIN WR)
82-103


PUNG_VARV
URACIL-DNA GLUCOSYLASE
VARIOLA VIRUS
82-103


PUNG_VZVD
URACIL-DNA GLUCOSYLASE
VARICELLA-ZOSTER VIRUS
217-243




(STRAIN DUMAS)


PUS02_HSVEB
GENE 68 PROTEIN
EQUINE HERPESVIRUS TYPE 1
48-63




(STRAIN AB4P)


PUS02_HSVEK
US1 PROTEIN
EQUINE HERPESVIRUS TYPE 1
48-63




(STRAIN KENTUCKY A)


PUS02_PRVN3
PROTEIN US2 HOMOLOG
PSEUDORABIES VIRUS
120-136




(STRAIN NIA-3)


PUS03_HCMVA
HQLF1 PROTEIN
HUMAN CYTOMEGALOVIRUS
24-39




(STRAIN AD169)


PUS05_HSV11
PUTATIVE GLYCOPROTEIN
HERPES SIMPLEX VIRUS
53-70



US5
(TYPE 1/STRAIN 17)


PUS05_HSV2
PUTATIVE GLYCOPROTEIN
HERPES SIMPLEX VIRUS
53-70



US5
(TYPE 2)


PUS09_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
179-206



HXLF3
(STRAIN AD169)


PUS11_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
98-113



HXLF1
(STRAIN AD169)


PUS12_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
29-50
113-135
195-222



HVLF6
(STRAIN AD169)


PUS13_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
11-33
208-231



HVLF5
(STRAIN AD169)


PUS14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
236-260



HVLF4
(STRAIN AD169)


PUS15_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
378-402
443-466



HVLF3
(STRAIN AD169)


PUS16_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
151-174
243-267



HVLF2
(STRAIN AD169)


PUS17_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
110-126



HVLF1
(STRAIN AD169)


PUS19_HCMVA
MEMBRANE PROTEIN
HUMAN CYTOMEGALOVIRUS
120-142
178-202
214-232



HWLF4
(STRAIN AD169)


PUS21_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
41-67
155-182



HWLF2
(STRAIN AD169)


PUS22_HCMVA
EARLY NUCLEAR PROTEIN
HUMAN CYTOMEGALOVIRUS
270-292



HWLF1
(STRAIN AD169)


PUS23_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
292-310



HHLF7
(STRAIN AD169)


PUS24_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
352-373



HHLF6
(STRAIN AD169)


PUS28_HCMVA
G-PROTEIN COUPLED REC
HUMAN CYTOMEGALOVIRUS
34-49
140-160



HOMOLOG US28
(STRAIN AD169)


PUS28_HCMVT
G-PROTEIN COUPLED REC
HUMAN CYTOMEGALOVIRUS
34-49
140-160



HOMOLOG US28
(STRAIN TOWNE)


PUS29_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
246-269



HHRF4
(STRAIN AD169)


PUS30_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
102-128
208-233



HHRF5
(STRAIN AD169)


PUS33_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
41-59



HHLF3
(STRAIN AD169)


PV07K_LSV
7 KD PROTEIN
LILY SYMPTOMLESS VIRUS
27-46


PV07K_NMV
7 KD PROTEIN
POTATO VIRUS S (STRAIN
28-49




PERUVIAN)


PV07K_PVSP
7 KD PROTEIN
POTATO VIRUS X (PVX)
31-48


PV07K_PVX
7 KD PROTEIN
POTATO VIRUS X (STRAIN X3)
31-48


PV07K_PVXX3
7 KD PROTEIN
POTATO VIRUS X (STRAIN XC)
31-48




(STRAIN CP)


PV117_ASFL5
LIS 121-1 PROTEIN
AFRICAN SWINE FEVER VIRUS
73-94




(STRAIN LIS57)


PV121_ASFL5
125 KD PROTEIN
ALFALFA MOSAIC VIRUS
59-79




(STRAIN 425/ISOLATE LEIDEN)


PV12K_PVMR
12 KD PROTEIN
POTATO VIRUS M (STRAIN
79-96




RUSSIAN)


PV13K_TRVPL
16 KD PROTEIN
TOBACCO RATTLE VIRUS
24-51




(STRAIN PLB)


PV143_NPVAC
HELICASE
AUTOGRAPHA CALIFORNICA
79-102
846-863
1013-1037




NUCLEAR POLYHEDROSIS VIRUS


PV14K_BSVM
14 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
14-29
80-99




(BSMV)


PV18K_MLVAB
18 KD PROTEIN
ABELSON MURINE LEUKEMIA
29-44
128-154




VIRUS


PV19R_VACCV
PROTEIN B19
VACCINIA VIRUS (STRAIN WR)
114-132
152-172


PV1A_BBMV
1A PROTEIN
BROAD BEAN MOTTLE VIRUS
196-220
752-771


PV1A_BMV
1A PROTEIN
BROME MOSAIC VIRUS
747-767


PV1A_CCMV
1A PROTEIN
COWPEA CHLOROTIC MOTTLE
744-763




VIRUS


PV1A_CMVFN
1A PROTEIN
CUCUMBER MOSAIC VIRUS
775-800




(STRAIN FNY)


PV1A_CMVO
1A PROTEIN
CUCUMBER MOSAIC VIRUS
775-800




(STRAIN O)


PV1A_CMVQ
1A PROTEIN
CUCUMBER MOSAIC VIRUS
774-799




(STRAIN Q)


PV1A_PSVJ
1A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
472-493
783-808


PV23K_HSVTH
23 5 KD PROTEIN
TURKEY HERPESVIRUS
176-191




(STRAIN H2)


PV28K_PLRV1
28 KD PROTEIN
POTATO LEAFROLL VIRUS
60-76
192-207




(STRAIN 1) (


PV28K_PLRVW
28 KD PROTEIN
POTATO LEAFROLL VIRUS
60-76
192-207




(STRAIN WAGENINGEN)


PV29K_BWYVF
29 KD PROTEIN
BEET WESTERN YELLOWS VIRUS
22-43
136-157




(ISOLATE FL-1)


PV29K_PEBV
29 6 KD PROTEIN
PEA EARLY BROWNING VIRUS
114-132


PV2A_BMV
2A PROTEIN
BROME MOSAIC VIRUS
285-303
759-777


PV2A_CCMV
2A PROTEIN
COWPEA CHLOROTIC MOTTLE
296-314




VIRUS


PV2A_TAV
2A PROTEIN
TOMATO ASPERMY VIRUS
234-255


PV30K_TRVTC
29 1 KD PROTEIN
TOBACCO RATTLE VIRUS
62-82




(STRAIN TCM)


PV31K_TOBSV
31 7 KD PROTEIN
TOBACCO STREAK VIRUS
226-250




(STRAIN WC)


PV362_ASFB7
K 362 PROTEIN
AFRICAN SWINE FEVER VIRUS
145-164




(STRAIN BA71V)


PV375_ASFL5
LIS 375 PROTEIN
AFRICAN SWINE FEVER VIRUS
114-135




(STRAIN LIS57)


PV382_ASFL5
LIS 382 PROTEIN
AFRICAN SWINE FEVER VIRUS
114-135




(STRAIN LIS57)


PV3A_CCMV
COWPEA CHLOROTIC

160-187



MOTTLE VIRUS


PV3A_CMVFN
3A PROTEIN
CUCUMBER MOSAIC VIRUS
214-235




(STRAIN FNY)


PV3A_CMVM
3A PROTEIN
CUCUMBER MOSAIC VIRUS
214-235




(STRAIN M)


PV3A_CMVO
3A PROTEIN
CUCUMBER MOSAIC VIRUS
214-235




(STRAIN O)


PV3A_CMVQ
3A PROTEIN
CUCUMBER MOSAIC VIRUS
214-235




(STRAIN Q)


PV3A_CMVY
CUCUMBER MOSAIC VIRUS

214-235



(STRAIN Y)


PV3A_IBVB
3A PROTEIN
AVAIN INFECTIOUS BRONCHITIS
5-28




VIRUS (STRAIN BEAUDETTE)


PV3A_IBVM
3A PROTEIN
AVAIN INFECTIOUS BRONCHITIS
5-28




VIRUS (STRAIN M41)


PV3A_IBVP3
3A PROTEIN
AVAIN INFECTIOUS BRONCHITIS
5-28




VIRUS (STRAIN PORTUGAL/322/82)


PV3A_IBVU5
3A PROTEIN
AVAIN INFECTIOUS BRONCHITIS
5-28




VIRUS (STRAIN UK/183/66)


PV3A_TAV
3A PROTEIN
TOMATO ASPERMY VIRUS
147-168


PV58K_BSMV
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
320-340


PV66K_BWYVF
PROTEIN 6B
CANINE ENTERIC CORONA VIRUS
97-116




(STRAIN K378)


PV70K_TYMVA
69 KD PROTEIN
TURNIP YELLOW MOSAIC VIRUS
12-35




(AUSTRALIAN ISOLATE)


PV90K_AMVLE
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN
44-59




425/ISOLATE LEIDEN)


PVA04_VACCC
PROTEIN A4
VACCINIA VIRUS (STRAIN
217-244




COPENHAGEN)


PVA04_VACCV
PROTEIN A4
VACCINIA VIRUS (STRAIN WR)
217-244


PVA04_VARV
PROTEIN A4
VARIOLA VIRUS
207-234


PVA09_VACCC
PROTEIN A9
VACCINIA VIRUS (STRAIN
41-66




COPENHAGEN)


PVA09_VARV
PROTEIN A9
VARIOLA VIRUS
41-66


PVA11_VACCC
PROTEIN A11
VACCINIA VIRUS (STRAIN
23-44
140-159
299-317




COPENHAGEN)


PVA11_VARV
PROTEIN A11
VARIOLA VIRUS
23-44
141-160
300-318


PVA14_VACCC
PROTEIN A14
VACCINIA VIRUS (STRAIN
39-62




COPENHAGEN)


PVA14_VARV
PROTEIN A14
VARIOLA VIRUS
39-62


PVA16_VACCC
PROTEIN A16
VACCINIA VIRUS (STRAIN
341-362




COPENHAGEN)


PVA16_VARV
PROTEIN A16
VARIOLA VIRUS
340-361


PVA18_VACCC
56 KD ABORTIVE LATE
VACCINIA VIRUS (STRAIN
429-447



PROTEIN
COPENHAGEN)


PVA18_VACCV
56 KD ABORTIVE LATE
VACCINIA VIRUS (STRAIN WR)
429-447



PROTEIN


PVA18_VARV
56 KD ABORTIVE LATE
VARIOLA VIRUS
429-447




PROTEIN


PVA20_VACCC
PROTEIN A20
VACCINIA VIRUS (STRAIN
107-131
193-209




COPENHAGEN)


PVA20_VARV
PROTEIN A20
VARIOLA VIRUS
107-131
193-209


PVA23_VARV
PROTEIN A23
VARIOLA VIRUS
58-82


PVA28_VACCV
PROTEIN A28
VACCINIA VIRUS (STRAIN WR),
53-76




AND (STRAIN COPENHAGEN)


PVA28_VARV
PROTEIN A28
VARIOLA VIRUS
53-76


PVA32_VACCV
PROTEIN A32
VACCINIA VIRUS (STRAIN WR),
205-220




AND (STRAIN COPENHAGEN)


PVA32_VARV
PROTEIN A32
VARIOLA VIRUS
175-190


PVA35_VACCC
PROTEIN A35 PRECURSOR
VACCINIA VIRUS (STRAIN
33-49




COPENHAGEN)


PVA35_VACCV
PROTEIN A35 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
33-49
141-164


PVA37_VACCC
PROTEIN A37
VACCINIA VIRUS (STRAIN
66-90




COPENHAGEN)


PVA37_VACCV
PROTEIN A37
VACCINIA VIRUS (STRAIN WR)
66-90


PVA40_VACCC
PROTEIN A40
VACCINIA VIRUS (STRAIN
4-30




COPENHAGEN)


PVA41_VACCC
PROTEIN A41 PRECURSOR
VACCINIA VIRUS (STRAIN
47-71




COPENHAGEN)


PVA41_VACCV
PROTEIN A41 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
47-71


PVA41_VARV
PROTEIN A41 PRECURSOR
VARIOLA VIRUS
47-71


PVA47_VACCC
PROTEIN A47
VACCINIA VIRUS (STRAIN
59-79
201-226




COPENHAGEN)


PVA47_VACCV
PROTEIN A47
VACCINIA VIRUS (STRAIN WR)
59-79
201-226


PVA47_VARV
PROTEIN A47
VARIOLA VIRUS
59-79
201-226


PVA55-VACCC
PROTEIN A55
VACCINIA VIRUS (STRAIN
247-266
384-404




COPENHAGEN)


PVA55_VACCV
PROTEIN A55
VACCINIA VIRUS (STRAIN WR)
247-266
384-404


PVAL1_BCTV
AL1 PROTEIN
BEET CURLY TOP VIRUS
56-75


VAL1_CLVK
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
55-74




WEST KENYAN 844)


PVAL1_CLVN
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
55-74




NIGERIAN)


PVAL3_BCTV
AL3 PROTEIN
BEET CURLY TOP VIRUS
82-108


PVAL3_CLVK
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
77-97




WEST KENYAN 844)


PVAL3_CLVN
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
77-97




NIGERIAN)


PVAL3_TYLCM
AL3 PROTEIN
TOMATO YELLOW LEAF CURL
78-97




VIRUS (STRAIN MARMANDE)


PVAL3_TYLCV
AL3 PROTEIN
TOMATO YELLOW LEAF CURL
77-97




VIRUS


PVAT_CAMVC
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157



PROTEIN
(STRAIN CM-1841)


PVAT_CAMVD
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157



PROTEIN
(STRAIN D/H)


PVAT_CAMVE
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157



PROTEIN
(STRAIN BBC)


PVAT_CAMVN
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157



PROTEIN
(STRAIN NY8153)


PVAT_CAMVP
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157



PROTEIN
(STRAIN PV147)


PVAT_CAMVS
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
134-157



PROTEIN
(STRAIN STRASBOURG)


PVAT_CAMVW
APHID TRANSMISSION
CAULIFLOWER MOSAIC VIRUS
34-60



PROTEIN
(STRAIN W260)


PVAT_CERV
APHID TRANSMISSION
CARNATION ETCHED RING VIRUS
141-161



PROTEIN


PVAT_FMVD
APHID TRANSMISSION
FIGWORT MOSAIC VIRUS
132-159



PROTEIN
(STRAIN DXS)


PVB02_VACCC
PROTEIN B2
VACCINIA VIRUS (STRAIN
155-170




COPENHAGEN)


PVB02_VACCV
PROTEIN B2
VACCINIA VIRUS (STRAIN WR)
155-170


PVB04_VACCC
PROTEIN B4
VACCINIA VIRUS (STRAIN
155-170




COPENHAGEN)


PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
489-511


PVB04_VARV
PROTEIN B4
VARIOLA VIRUS
489-511


PVB05_VACC0
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN
251-271



PROTEIN PRECURSOR
LC16MO)


PVB05_VACCC
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN
251-271



PROTEIN PRECUROSR
COPENHAGEN)


PVB05_VACCL
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN LISTER)
251-271



PROTEIN PRECURSOR


PVB05_VACCV
PLAQUE-SIZE/HOST RANGE
VACCINIA VIRUS (STRAIN WR)
251-271



PROTEIN PRECURSOR


PVB06_VACCV
PROTEIN B6
VACCINIA VIRUS (STRAIN WR)
59-82




AND (STRAIN COPENHAGEN)


PVB15_VACCC
PROTEIN B15
VACCINIA VIRUS (STRAIN
121-143




COPENHAGEN)


PVB15_VACCV
PROTEIN B15
VACCINIA VIRUS (STRAIN WR)
121-143


PVB15_VARV
PROTEIN B15
VARIOLA VIRUS
121-143


PVB17_VACCC
PROTEIN B17
VACCINIA VIRUS (STRAIN
157-179




COPENHAGEN)


PVB17_VACCV
PROTEIN B17
VACCINIA VIRUS (STRAIN WR)


PVBL1_CLVK
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
34-51




WEST KENYAN 844)


PVBL1_CLVN
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
34-51




NIGERIAN)


PVBL1_SLCV
BL1 PROTEIN
SQUASH LEAF CURL VIRUS
245-268


PVBRL1_ABMVW
BR1 PROTEIN
ABUTILON MOSAIC VIRUS
166-191




(ISOLATE WEST INDIA)


PVBR1_BGMV
BR1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
166-191


PVBR1_PYMVV
BR1 PROTEIN
POTATO YELLOW MOSAIC VIRUS
166-191




(ISOLATE VENEZUELA)


PVBR1_SLCV
BR1 PROTEIN
SQUASH LEAF CURL VIRUS


PVC01_VACCC
PROTEIN C1
VACCINIA VIRUS (STRAIN
70-90




COPENHAGEN)


PVC01_VACCV
PROTEIN C1
VACCINIA VIRUS (STRAIN WR)
75-95


PVC01_VARV
PROTEIN C1
VARIOLA VIRUS
58-78


PVC02_SFVKA
HYPOTHETICAL PROTEIN C2
SHOPE FIBROMA VIRUS
8-31




(STRAIN KASZA)


PVC03_SFVKA
G-PROTEIN COUPLED
SHOPE FIBROMA VIRUS
98-123
179-197



RECEPTOR HOMOLOG C3
(STRAIN KASZA)


PVC04_VACCC
PROTEIN C4
VACCINIA VIRUS (STRAIN
182-209




COPENHAGEN)


PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
183-208


PVC05_SFVKA
HYPOTHETICAL PROTEIN C6
SHOPE FIBROMA VIRUS
20-47




(STRAIN KASZA)


PVC08_SFVKA
HYPOTHETICAL PROTEIN C8
SHOPE FIBROMA VIRUS
14-30




(STRAIN KASZA)


PVC09_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN
40-59




COPENHAGEN)


PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
40-59


PVC10_SFVKA
HYPOTHETICAL PROTEIN C10
SHOPE FIBROMA VIRUS
85-109




(STRAIN KASZA)


PVC10_VACCC
PROTEIN C10
VACCINIA VIRUS (STRAIN
42-64




COPENHAGEN)


PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
42-64


PVC10_VARV
PROTEIN C10
VARIOLA VIRUS
42-64


PVC16_VACCC
PROTEIN C16/B22
VACCINIA VIRUS (STRAIN
41-68




COPENHAGEN)


PVC17_VACCC
PROTEIN C17/B23
VACCINIA VIRUS (STRAIN
301-326




COPENHAGEN)


PVC21_VACCC
PROTEIN C21/B27
VACCINIA VIRUS (STRAIN
3-28




COPENHAGEN)


PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS
148-172
366-381
1072-1095




(STRAIN B95-8)


PVCAP_HCMVA
MAJOR CAPSID PROTEIN
HUMAN CYTOMEGALOVIRUS
668-684
842-860
871-893




(STRAIN AD169)


PVCAP_HSV11
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS
283-302
358-384
1137-1152




(TYPE 1/STRAIN 17)


PVCAP_HSVEB
MAJOR CAPSID PROTEIN
EQUINE HERPESVIRUS TYPE 1
357-383
872-898




(STRAIN AB4P)


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI
144-168
269-287
357-372
1062-1089




(STRAIN 11)


PVCAP_PRVIS
MAJOR CAPSID PROTEIN
PSEUDORABIES VIRUS
335-362




(STRAIN INDIANA S)


PVCAP_VZVD
MAJOR CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS
381-401
891-910
1156-1176




(STRAIN DUMAS)


PVCG3_NPVAC
DNA-BINDING PROTEIN
AUTOGRAPHA CALIFORNICA
60-81




NUCLEAR POLYHEDROSIS VIRUS


PVD03_VACCC
PROTEIN D3
VACCINIA VIRUS (STRAIN
12-39




COPENHAGEN)


PVD03_VACCV
PROTEIN D3
VACCINIA VIRUS (STRAIN WR)
12-39


PVD03_VARV
PROTEIN D3
VARIOLA VIRUS
12-39


PVD05_FOWP1
92 6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
246-265
315-337


PVD05_SFVKA
PROTEIN D5
SHOPE FIBROMA VIRUS
54-78
171-198




(STRAIN KASZA)


PVD05_VACCC
PROTEIN D5
VACCINIA VIRUS (STRAIN
320-340
694-714
715-734




COPENHAGEN)


PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
320-340
694-714
715-734


PVD05_VARV
PROTEIN D5
VARIOLA VIRUS
320-340
694-714
715-734


PVDBP_CAMVC
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56




(STRAIN CM-1841)


PVDBP_CAMVD
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56




(STRAIN D/H)


PVDBP_CAMVE
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56




(STRAIN BBC)


PVDBP_CAMVN
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56




(STRAIN NY8153)


PVDBP_CAMVS
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS
37-56




(STRAIN STRASBOURG)


PVE02_VACCC
PROTEIN E2
VACCINIA VIRUS (STRAIN
70-97
355-380
540-558




COPENHAGEN)


PVE02_VACCV
PROTEIN E2
VACCINIA VIRUS (STRAIN WR)
70-97
355-380
540-558


PVE02_VARV
PROTEIN E2
VARIOLA VIRUS
70-97
355-380
540-558


PVE05_VACCC
PROTEIN E5
VACCINIA VIRUS (STRAIN
314-329




COPENHAGEN)


PVE05_VACCD
PROTEIN E5
VACCINIA VIRUS (STRAIN
324-339




DAIREN I)


PVE05_VACCV
PROTEIN E5
VACCINIA VIRUS (STRAIN WR)
324-339


PVE05_VARV
PROTEIN E5
VARIOLA VIRUS
324-339


PVE06_VACCC
PROTEIN E6
VACCINIA VIRUS (STRAIN
430-451




COPENHAGEN)


PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
430-451


PVE06_VARV
PROTEIN E6
VARIOLA VIRUS
251-267
430-451


PVE08_VACCC
PROTEIN E8
VACCINIA VIRUS (STRAIN
254-270




COPENHAGEN)


PVEO8_VACCV
PROTEIN E8
VACCINIA VIRUS (STRAIN WR)
254-270


PVE08_VARV
PROTEIN E8
VARIOLA VIRUS
254-270


PVE12_HPV16
PROBABLE E1 PROTEIN 2
HUMAN PAPILLOMAVIRUS
167-183




TYPE 16


PVE18_NPVAC
EARLY 18 5 KD PROTEIN
AUTOGRAPHA CALIFORNICA
106-113




NUCLEAR POLYHEDROSIS VIRUS


PVE1_BPV1
E1 PROTEIN
BOVINE PAPILLOMAVIRUS
265-282
517-533




TYPE 1


PVE1_BPV2
E1 PROTEIN
BOVINE PAPILLOMAVIRUS
265-281
516-532




TYPE 2


PVE1_CRPVK
E1 PROTEIN
COTTONTAIL RABBIT (SHOPE)
7-22




PAPILLOMAVIRUS (STRAIN




KANSAS)


PVE1_HPV11
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
258-275
311-334




TYPE 11


PVE1_HPV13
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
308-324




TYPE 13


PVE1_HPV18
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
264-281
317-333
344-364




TYPE 18


PVE1_HPV31
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
237-254




TYPE 31


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
238-260




TYPE 33


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
334-354




TYPE 39


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
363-380




TYPE 41


PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
304-320




TYPE 42


PVE1_HPV58
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
238-260




TYPE 58


PVE1_HPV6B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS
258-275
311-334




TYPE 6B


PVE1_PCPV1
E1 PROTEIN
PYGMY CHIMPANZEE
257-274
310-326




PAPILLOMAVIRUS TYPE 1


PVE1_RHPV1
E1 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
286-309


PVE2_CRPVK
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE)
308-333




PAPILLOMAVIRUS (STRAIN




KANSAS)


PVE2_HPV11
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
285-310



TYPE 11


PVE2_HPV13
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
295-320




TYPE 13


PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
288-306




TYPE 18


PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
284-300




TYPE 1A


PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
311-336




TYPE 2A


PVE2_HPV31
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
294-312




TYPE 31


PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
275-293




TYPE 33


PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
289-307




TYPE 35


PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
292-310




TYPE 39


PVE2_HPV42
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
321-338




TYPE 42


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
303-328




TYPE 57


PVE2_HPV6B
E2 PROTEIN
HUMAN PAPILLOMAVIRUS
286-311




TYPE 6B


PVE2_PAPVD
PROBABLE E2 PROTEIN
DEER PAPIOLMAVIRUS
333-351


PVE2_PCPV1
E2 PROTEIN
PYGMY CHIMPANZEE
295-320




PAPILLOMAVIRUS TYPE 1


PVE2_RHPV1
E2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
290-308


PVE4_HPV18
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
39-59




TYPE 18


PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
56-76




TYPE 41


PVE4_HPV51
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
59-83




TYPE 51


PVE4_RHPV1
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS
63-87




TYPE 1


PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
19-42




TYPE 11


PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS
19-42




TYPE 6C


PVE5_BPV1
E5 PROTEIN
BOVINE PAPILLOMAVIRUS
2-26




TYPE 1 AND TYPE 2


PVE5_HPV13
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
19-42




TYPE 13


PVE5_HPV31
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
31-52




TYPE 31


PVE5_HPV42
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
45-65




TYPE 42


PVE5_HPV51
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
31-52




TYPE 51


PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS
89-113




TYPE 5B


PVE5_RHPV1
PROBABLE E5 PROTEIN
RHESUS PAPILLOMAVIRUS
109-132




TYPE 1


PVE6_BPV1
56 PROTEIN
BOVINE PAPILLOMAVIRUS
23-41




TYPE 1


PVE6_CRPVK
E6 PROTEIN
COTTONTAIL RABBIT (SHOPE)
6-23




PAPILLOMAVIRUS (STRAIN KANSAS)


PVE6_HPV08
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
133-151




TYPE 8


PVE6_HPV2A
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
8-27




TYPE 2A


PVE6_HPV33
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
9-26




TYPE 33


PVE6_HPV35
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
9-26




TYPE 35


PVE6_HPV51
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
9-26




TYPE 51


PVE6_HPV57
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
8-27




TYPE 57


PVE6_HPV58
E6 PROTEIN
HUMAN PAPILLOMAVIRUS
9-26




TYPE 58


PVE6_MMPV
E6 PROTEIN
MICROMYS MINUTUS
7-33
36-60




PAPILLOMAVIRUS


PVE7_CRPVK
E7 PROTEIN
COTTONTAIL RABBIT (SHOPE)
71-88




PAPILLOMAVIRUS (STRAIN KANSAS)


PVE7_HPV13
E7 PROTEIN
HUMAN PAPILLOMAVIRUS
77-93




TYPE 13


PVE7_HPV51
E7 PROTEIN
HUMAN PAPILLOMAVIRUS
61-87




TYPE 51


PVE7_HPV6B
E7 PROTEIN
HUMAN PAPILLOMAVIRUS
20-37




TYPE 6B


PVE7_RHPV1
E7 PROTEIN
RHESUS PAPILLOMAVIRUS
79-105




TYPE 1


PVE94_NPVAC
EARLY 94 KD PROTEIN
AUTOGRAPHA CALIFORNICA
78-99
203-222




NUCLEAR POLYHEDROSIS VIRUS


PVEF_GVTN
VIRAL ENHANCING FACTOR
TRICHOPLUSIA NI GRANULOSIS
154-175
237-260
677-696




VIRUS


PVENV_BEV
ENVELOPE PROTEIN
BERNE VIRUS
62-86
87-114


PVENV_DHV11
ENVELOPE GLYCOPROTEIN
DHORI VIRUS (STRAIN
42-57
484-511



PRECURSOR
INDIAN/1313/61)


PVENV_EAV
PROBABLE ENVELOPE
EQUINE ARTERITIS VIRUS
25-41



PROTEIN


PVENV_LELV
PROBABLE ENVELOPE
LELYSTAD VIRUS
27-47
148-168



PROTEIN


PVENNV_MCV1
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM
61-80




VIRUS SUBTYPE 1


PVENV_MCV2
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM
61-80
306-333




VIRUS SUBTYPE 1


PVENV_THOGV
ENVELOPE GLYCOPROTEIN
THOGOTO VIRUS
196-221
356-383
473-491



PRECURSOR


PVETM_NPVAC
ECORI-T SITE PROTEIN ETM
AUTOGRAPHA CALIFORNICA
82-105




NUCLEAR POLYHEDROSIS VIRUS


PVF05_VACCC
36 KD MAJOR MEMBRANE
VACCININA VIRUS (STRAIN
280-305



PROTEIN PRECURSOR
COPENHAGEN)


PVF05_VACCP
36 KD MAJOR MEMBRANE
VACCINIA VIRUS (STRAIN L-IVP)
280-305



PROTEIN PRECURSOR


PVF05_VACCV
36 KD MAJOR MEMBRANE
VACCINIA VIRUS (STRAIN WR)
281-306



PROTEIN PRECURSOR


PVF05_VARV
36 KD MAJOR MEMBRANE
VARIOLA VIRUS
280-305



PROTEIN PRECURSOR


PVF09_VACCC
PROTEIN F9
VACCINIA VIRUS (STRAIN
176-200




COPENHAGEN), AND




(STRAIN L-IVP)


PVF09_VACCV
PROTEIN F9
VACCINIA VIRUS (STRAIN WR)
176-200


PVF09_VARV
PROTEIN F9
VARIOLA VIRUS
176-200


PFV11_VACCC
PROTEIN F11
VACCINIA VIRUS (STRAIN
161-184




COPENHAGEN)


PVF11_VARV
PROTEIN F11
VARIOLA VIRUS
161-184


PVF15_VACCC
PROTEIN F15
VACCINIA VIRUS (STRAIN
25-48




COPENHAGEN)


PVF15_VACCP
PROTEIN F15
VACCINIA VIRUS (STRAIN L-IVP)
3-26


PVF15_VARV
PROTEIN F15
VARIOLA VIRUS
28-51


PVFP1_FOWPV
PROTEIN FP1
FOWLPOX VIRUS
297-333


PVFP2_FOWPV
PROTEIN FP2
FOWLPOX VIRUS
88-104


PVFP7_CAPVK
PROTEIN F7
CAPRIPOXIVIRUS (STRAIN KS-1)
89-111


PVFP7_FOWPV
PROTEIN FP7
FOWLPOX VIRUS
65-90


PVFP8_CAPVK
CF8A PROTEIN
CAPRIPOXVIRUS (STRAIN KS-1)
51-76


PVFUS_ORFNZ
10 KD FUSION PROTEIN
ORF VIRUS (STRAIN NZ2)
29-48


PVFUS_VACC6
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN
72-94




WR 65-16)


PVG01_HSVEB
HYPOTHETICAL GENE 1
EQUINE HERPESVIRUS TYPE 1
169-195



PROTEIN
(STRAIN AB4P)


PVG01_HSV11
HYPOTHETICAL GENE 1
ICTALURID HERPESVIRUS 1
210-225
317-339
589-616



PROTEIN


PVG01_VACCC
PROTEIN G1
VACCINIA VIRUS (STRAIN
298-318
376-395




COPENHAGEN)


PVG01_VACCV
PROTEIN G1
VACCINIA VIRUS (STRAIN WR)
237-257
315-334


PVG01_VARV
PROTEIN G1
VARIOLA VIRUS
298-318
376-395


PVG01_VZVD
HYPOTHETICAL GENE 1
VARICELLA-ZOSTER VIRUS
58-82



PROTEIN
(STRAIN DUMAS)


PVG03_VACCC
PROTEIN G3
VACCINIA VIRUS (STRAIN
50-72




COPENHAGEN)


PVG03_VARV
PROTEIN G3
VARIOLA VIRUS
50-72


PVG04_VACCC
PROTEIN G4
VACCINIA VIRUS (STRAIN
11-33




COPENHAGEN)


PVG04_VARV
PROTEIN G4
VARIOLA VIRUS
11-33


PVG06_VACCC
PROTEIN G6
VACCINIA VIRUS (STRAIN
31-51




COPENHAGEN)


PVG06_VARV
PROTEIN G6
VARIOLA VIRUS
31-51


PVG08_HSV11
HYPOTHETICAL GENE 8
ICTALURID HERPESVIRUS 1
134-149
159-185



MEMBRANE PROTEIN


PVG10_HSV11
HYPOTHETICAL GENE 10
ICTALURID HERPESVIRUS 1
35-54



MEMBRANE PROTEIN


PVG10_HSVSA
HERPESVIRUS SAIMIRI
HERPESVIRUS SAIMIRI
109-124
355-379




(STRAIN 11)


PVG11_HSV11
HYPOTHETICAL GENE 11
ICTALURID HERPESVIRUS 1
103-122
150-176



ZINE-BINDING PROTEIN


PVG12_HSV11
HYPOTHETICAL GENE 12
ICTALURID HERPESVIRUS 1
151-178
270-286



ZINC-BINDING PROTEIN


PVG12_HSVSA
HYPOTHETICAL GENE 12
HERPESVIRUS SAIMIRI
68-92



PROTEIN
(STRAIN 11)


PVG19_HSV11
HYPOTHETICAL GENE 19
ICTALURID HERPESVIRUS 1
88-112



MEMBRANE PROTEIN


PVG1L_AMEPV
G1L PROTEIN
AMSACTA MOOREI
313-336




ENTOMOPOXVIRUS


PVG1_SPV1R
CAPSID PROTEIN
SPIROPLASMA VIRUS
76-92
659-678




SPV1-R8A2 B


PVG22_HSV11
HYPOTHETICAL GENE 22
ICTALURID HERPESVIRUS 1
300-327



PROTEIN


PVG23_HSV11
HYPOTHETICAL GENE 23
ICTALURID HERPESVIRUS 1
314-335



PROTEIN


PVG27_HSV11
HYPOTHETICAL GENE 27
ICTALURID HERPESVIRUS 1
158-184



PROTEIN


PVG27_HSVSA
HYPOTHETICAL GENE 27
HERPESVIRUS SAIMIRI
209-226



PROTEIN
(STRAIN 11)


PVG28_HSV11
HYPOTHETICAL GENE 28
ICTALURID HERPESVIRUS 1
173-197
491-518



PROTEIN


PVG28_HSVSA
HYPOTHETICAL GENE 28
HERPESVIRUS SAIMIRI
14-40



PROTEIN
(STRAIN 11)


PVG29_HSV11
HYPOTHETICAL GENE 29
ICTALURID HERPESVIRUS 1
20-42



PROTEIN


PVG30_HSV11
HYPOTHETICAL GENE 30
ICTALURID HERPESVIRUS 1
166-191



PROTEIN


PVG32_VZVD
GENE 32 PROTEIN
VARICELLA-ZOSTER VIRUS
90-109




(STRAIN DUMAS)


PVG36_HSVSA
POSSIBLE TYROSINE-
HERPESVIRUS SAIMIRI
108-123
344-362



PROTEIN KINASE
(STRAIN 11)


PVG37_HSV11
HYPOTHETICAL GENE 37
ICTALURID HERPESVIRUS 1
284-299



PROTEIN


PVG39_HSV11
HYPOTHETICAL GENE 39
ICTALURID HERPESVIRUS 1
648-675
970-990
1038-1065



PROTEIN


PVG40_HSV11
HYPOTHETICAL GENE 40
ICTALURID HERPESVIRUS 1
14-32



PROTEIN


PVG41_HSV11
HYPOTHETICAL GENE 41
ICTALURID HERPESVIRUS 1
11-38
62-81
244-260



PROTEIN


PVG43_HSV11
HYPOTHETICAL GENE 43
ICTALURID HERPESVIRUS 1
109-133
157-178
322-345
521-538



PROTEIN


PVG46_HSV11
PROBABLE MAJOR
ICTALURID HERPESVIRUS 1
134-156
580-607
937-963
1244-1270



GLYCOPROTEIN


PVG48_HSV11
HYPOTHETICAL GENE 48
ICTALURID HERPESVIRUS 1
71-93



PROTEIN


PVG50_HSVSA
PROB TRANSCRIPTION
HERPESVIRUS SAIMIRI
5-30
58-83



ACTIVATOR EDRF1
(STRAIN 11)


PVG51_HSV11
HYP GENE 51 MEMBRANE
ICTALURID HERPESVIRUS 1
29-49
84-102



PROTEIN


PVG52_HSV11
HYPOTHETICAL GENE 52
ICTALURID HERPESVIRUS 1
229-252



PROTEIN


PVG55_HSV11
HYPOTHETICAL GENE 55
ICTALURID HERPESVIRUS 1
22-37
143-158
288-309



PROTEIN


PVG55_HSVSA
HYPOTHETICAL GENE 55
HERPESVIRUS SAIMIRI
85-106



PROTEIN
(STRAIN 11)


PVG56_HSV11
HYPOTHETICAL GENE 56
ICTALURID HERPESVIRUS 1
1155-1176



PROTEIN


PVG58_HSVSA
GENE 58 PROTEIN
HERPESVIRUS SAIMIRI
130-146
266-288
293-319
330-346




(STRAIN 11)


PVG59_HSV11
HYP GENE 59 MEMBRANE
ICTALURID HERPESVIRUS 1
142-161
267-289



PROTEIN


PVG5_SPV4
GENE 5 PROTEIN
SPIROPLASMA VIRUS 4
42-64


PVG60_HSV11
HYPOTHETICAL GENE 60
ICTALURID HERPESVIURS 1
30-51
53-75



PROTEIN


PVG61_HSV11
HYPOTHETICAL GENE 61
ICTALURID HERPESVIRUS 1
76-102
117-136



PROTEIN


PVG63_HSV11
HYPOTHETICAL GENE 63
ICTALURID HERPESVIRUS 1
238-259
336-363



PROTEIN


PVG64_HSV11
HYPOTHETICAL GENE 64
ICTALURID HERPESVIRUS 1
420-445



PROTEIN


PVG65_HSV11
HYPOTHETICAL GENE 65
ICTALURID HERPESVIRUS 1
117-137
155-173
362-378
518-533
1147-1174
1347-1369



PROTEIN


PVG67_HSV11
HYPOTHETICAL GENE 67
ICTALURID HERPESVIRUS 1
108-132
171-188
318-344
722-745> 1005-1029
1072-1091
1315-1341



PROTEIN


PVG6_SPVIR
GENE 6 PROTEIN
SPIROPLASMA VIRUS
60-82




SPV1-R8A2 B


PVG70_HSV11
HYPOTHETICAL GENE 70
ICTALURID HERPESVIRUS 1
184-209



PROTEIN


PVG71_HSVSA
HYPOTHETICAL GENE 63
HERPESVIRUS SAIMIRI
89-105



PROTEIN
(STRAIN 11)


PVG72_HSV11
HYPOTHETICAL GENE 72
ICTALURID HERPESVIRUS 1
445-471
535-561
720-744
1252-1269



PROTEIN


PVG74_HSVSA
G-PROTEIN COUPLED REC
HERPESVIRUS SAIMIRI
124-151



HOMOLOG ECRF3
(STRAIN 11)


PVG9_SPV1R
GENE 9 PROTEIN
SPIROPLASMA VIRUS
57-72




SPV1-R8A2 B


PVGF1_IBVB
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS
1587-1606
1856-1877
2108-2127
2210-2226
2788-2806
2973-2999
3073-3090
3120-3145
3374-3399




VIRUS (STRAIN BEAUDETTE)





3601-3625


PVGH3_HCMVA
GLYCOPROTEIN H301
HUMAN CYTOMEGALOVIRUS
157-178



PRECURSOR
(STRAIN AD169)


PVGL1_CVPR8
E1 GLYCOPROTEIN
PORCINE RESPIRATORY
174-193



PRECURSOR
CORONAVIRUS (STRAIN




86/137004/BRITISH IS)


PVGL2_CVBF
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
10-33
123-139
174-190
264-279
991-1017
1259-1280



PRECURSOR
(STRAIN F15)


PVGL2_CVBL9
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
123-139
174-190
264-279
651-674
991-1017
1259-1280



PRECURSOR
(STRAIN L9)


PVGL2_CVBLY
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
10-33
123-139
174-190
264-279
991-1017
1259-1280



PRECURSOR
(STRAIN LY-138)


PVGL2_CVBM
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
123-139
174-190
264-279
991-1017
1259-1280



PRECURSOR
(STRAIN MEBUS)


PVGL2_CVBQ
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
31-47
123-139
174-190
264-279
991-1017
1259-1280



PRECURSOR
(STRAIN QUEBEC)


PVGL2_CVBV
E2 GLYCOPROTEIN
BOVINE CORONAVIRUS
123-139
174-190
264-279
991-1017
1259-1280



PRECURSOR
(STRAIN VACCINE)


PVGL2_CVH22
E2 GLYCOPROTEIN
HUMAN CORONAVIRUS
768-794
1053-1071
1115-1134



PRECURSOR
(STRAIN 229E)


PVGL2_CVM4
E2 GLYCOPROTEIN
MURINE CORONAVIRUS
95-111
999-1025
1267-1290
1317-1338



PRECURSOR
(STRAIN WILD TYPE 4)


PVGL2_CVMA5
E2 GLYCOPROTEIN
MURINE CORONAVIRUS
95-111
947-973
1215-1238
1265-1286



PRECURSOR
(STRAIN A59)


PVGL2_CVMJC
E2 GLYCOPROTEIN
MURINE CORONAVIRUS
95-111
999-1025
1267-1290
1317-1358



PRECURSOR
(STRAIN JHMV/VARIANT CL-2)


PVGL2_CVMJH
E2 GLYCOPROTEIN
MURINE CORONAVIRUS
95-111
858-884
1126-1149
1176-1197



PRECURSOR
(STRAIN JHM)


PVGL2_CVPFS
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
64-83
442-457
800-816
1038-1064
1274-1297



PRECURSOR
GASTROENTERITIS CORONAVIRUS




(STRAI)


PVGL2_CVPMI
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
64-83
442-457
506-521
800-816
1038-1064
1274-1297



PRECURSOR
GASTROENTERITIS CORONAVIRUS




(STRAI)


PVGL2_CVPPR
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
64-83
440-455
504-519
798-814
1036-1062
1272-1295



PRECURSOR
GASTROENTERITIS CORONAVIRUS




(STRAI)


PVGL2_CVPPU
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
74-83
440-455
504-519
798-814
1036-1062
1272-1295



PRECURSOR
GASTROENTERITIS CORONAVIRUS




(STRAI)


PVGL2_CVPR8
E2 GLYCOPROTEIN
PORCINE RESPIRATORY
219-233
576-592
814-840
1050-1073



PRECURSOR
CORONAVIRUS (STRAI)




86/137004/BRITISH I


PVGL2_CVPRM
E2 GLYCOPROTEIN
PORCINE RESPIRATORY
218-233
576-592
814-840
1050-1073



PRECURSOR
CORONAVIRUS (STRAIN RM4)


PVGL2_CVPRT
E2 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
64-83
440-455
504-519
798-814
1036-1062
1272-1295



PRECURSOR
GASTROENTERITIS CORONAVIRUS




(STRAI)


PVGL2_FIPV
E2 GLYCOPROTEIN
FELINE INFECTIOUS PERITONITIS
803-819
1041-1067
1277-1300



PRECURSOR
VIRUS (STRAIN 79-1146)


PVGL2_IBV6
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
196-219
588-607
771-797
1056-1081
1094-1111



PRECURSOR
VIRUS (STRAIN 6/82)


PVGL2_IBVB
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
195-218
587-606
770-796
1055-1080



PRECURSOR
VIRUS (STRAIN BEAUDETTE)


PVGL2_IBVD2
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
196-219
588-607
771-797
1056-1081



PRECURSOR
VIRUS (STRAIN D274) (


PVGL2_IBVD3
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
196-219



PRECURSOR
VIRUS (STRAIN D3896)


PVGL2_IBVK
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
195-218
587-606
770-796
1055-1080



PRECURSOR
VIRUS (STRAIN KB8523)


PVGL2_IBVM
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
195-218
378-398
587-606
770-796
1055-1080



PRECURSOR
VIRUS (STRAIN M41)


PVGL2_IBVU1
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
178-201




VIRUS (STRAIN UK/123/82)


PVGL2_IBVU2
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
178-201




VIRUS (STRAIN UK/142/86)


PVGL2_IBVU3
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
178-201




VIRUS (STRAIN UK/167/84)


PVGLB_EBV
GLYCOPROTEIN GP110
EPSTEIN-BARR VIRUS
732-752



PRECURSOR
(STRAIN B95-8)


PVGLB_HCMVA
GLYCOPROTEIN B
HUMAN CYTOMEGALOVIRUS
535-558
706-732
750-777



PRECURSOR
(STRAIN AD169)


PVGLB_HCMVT
GLYCOPROTEIN B
HUMAN CYTOMEGALOVIRUS
536-559
707-733
751-778



PRECURSOR
(STRAIN TOWNE)


PVGLB_HSV11
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
83-104



PRECURSOR
(TYPE 1/STRAIN 17)


PVGLB_HSV1F
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
82-103



PRECURSOR
(TYPE 1/STRAIN F)


PVGLB_HSV1K
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
82-103



PRECURSOR
(TYPE 1/STRAIN KOS)


PVGLB_HSV1P
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
83-104



PRECURSOR
(TYPE 1/STRAIN PATTON)


PVGLB_HSV23
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
79-99



PRECURSOR
(TYPE 2/STRAIN 333)/


PVGLB_HSV2H
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
79-99



PRECURSOR
(TYPE 2/STRAIN HG52)


PVGLB_HSV2S
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
65-85



PRECURSOR
(TYPE 2/STRAIN 54A)


PVGLB_HSV6U
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS
72-92
117-144



(FRAGMENT)
(TYPE 6/STRAIN UGANDA-1102)


PVGLB_HSVB1
GLYCOPROTEIN 1
BOVINE HERPESVIRUS TYPE 1
560-578
689-707



PRECURSOR


PVGLB_HSVB2
GLYCOPROTEIN B-1
BOVINE HERPESVIRUS TYPE 2
279-299
745-767



PRECURSOR
(STRAIN BMV) (BOVINE




MAMMILLITIS)


PVGLB_HSVBC
GLYCOPROTEIN 1
BOVINE HERPESVIRUS TYPE 1
692-710



PRECURSOR
(STRAIN COPPER)


PVGLB_HSVE1
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
736-753



PRECURSOR
(ISOLATE HVS25A) (EHV-1)


PVGLB_HSVE4
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
675-692



PRECURSOR
(STRAIN AB1)


PVGLB_HSVEA
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
736-753



PRECURSOR
(STRAIN AB1)


PVGLB_HSVEB
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
736-753



PRECURSOR
(STRAIN AB4P)


PVGLB_HSVEL
GLYCOPROTEIN B
EQUINE HERPESVIRUS TYPE 1
736-753



PRECURSOR
(STRAIN KENTUCKY D)


PVGLB_HSVMD
GLYCOPROTEIN B
MAREK'S DISEASE HERPESVIRUS
589-613



PRECURSOR
(STRAIN RB-1B)


PVGLB_HSVSA
GLYCOPROTEIN B
HERPESVIRUS SAIMIRI
483-506
584-602
701-716



PRECURSOR
(STRAIN 11)


PVGLB_ILTV6
GLYCOPROTEIN B
INFECTIOUS LARYNGOTRACHEI-
256-275
597-621
740-758



PRECURSOR
TIS VIRUS (STRAIN 632)


PVGLB_ILTVS
GLYCOPROTEIN B
INFECTIOUS LARYNGOTRACHEI-
266-285
607-631
750-768



PRECURSOR
TIS VIRUS (STRAIN SA-2)


PVGLB_ILTVT
GLYCOPROTEIN B
INFECTIOUS LARYNGOTRACHEI-
266-285
607-631
750-768



PRECURSOR
TIS VIRUS (STRAIN THRONE V882)


PVGLB_MCMVS
GLYCOPROTEIN B
MURINE CYTOMEGALOVIRUS
135-156
566-589
738-765



PRECURSOR
(STRAIN SMITH)


PVGLB_PRVIF
GLYCOPROTEIN GII
PSEUDORABIES VIRUS (STRAIN
203-218



PRECURSOR
INDIANA-FUNKHAUSER/BECKER)


PVGLB_VZVD
GLYCOPROTEIN B
VARICELLA-ZOSTER VIRUS
522-538



PRECURSOR
(STRAIN DUMAS)


PVGLC_HSV11
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
3-22
467-493



PRECURSOR
(TYPE 1/STRAIN 17)


PVGLC_HSV1K
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
3-22
467-491



PRECURSOR
(TYPE 1/STRAIN 17)


PVGLV_HSV2
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
435-458



PRECURSOR
(TYPE 2)


PVGLC_HSV23
GLYCOPROTEIN C
HERPES SIMPLEX VIRUS
436-459



PRECURSOR
(TYPE 2/STRAIN 333)


PVGLC_HSVBC
GLYCOPROTEIN GII
BOVINE HERPESVIRUS TYPE 1
475-494



PRECURSOR
(STRAIN COOPER)


PVGLC_HSVE4
GLYCOPROTEIN C
EQUINE HERPESVIRUS TYPE 4
444-459



PRECURSOR
(STRAIN 1942)


PVGLC_HSVEB
GLYCOPROTEIN C
EQUINE HERPESVIRUS TYPE 1
427-442



PRECURSOR
(STRAIN AB4P) AND




(STRAIN KENTUCKY)


PVGLC_HSVMB
SECRETORY GLYCOPROTEIN
MAREK'S DISEASE HERPESVIRUS
399-421



GP57-65 PRECURSOR
(STRAIN BC-1)


PVGLC_HSVMD
SECRETORY GLYCOPROTEIN
MAREK'S DISEASE HERPESVIRUS
399-421



GP57-65 PRECURSOR
(STRAIN RB-1B)


PVGLC_HSVMG
SECRETORY GLYCOPROTEIN
MAREK'S DISEASE HERPESVIRUS
398-420



GP57-65 PRECURSOR
(STRAIN GA)


PVGLC_HSVMM
SECRETORY GLYCOPROTEIN
MAREK'S DISEASE HERPESVIRUS
399-421



GP57-65 PRECURSOR
(STRAIN MD5)


PVGLC_PRVIF
GLYCOPROTEIN GIII
PSEUDORABIES VIRUS (STRAIN
180-197
446-472



PRECURSOR
INDIANA-FUNKHAUSER/BECKER)


PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS
431-449



(STRAIN DUMAS)


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS
431-449



(STRAIN SCOTT)


PCGLD_HSV11
GLYCOPROTEIN D
HERPES SIMPLEX VIRUS
79-94



PRECURSOR
(TYPE 1/STRAIN 17), AND




(TYPE 1/STRAIN


PVGLD_HSV2
GLYCOPROTEIN D
HERPES SIMPLEX VIRUS
79-94



PRECURSOR
(TYPE 2)


PVGLE_HSV11
GLYCOPROTEIN E
HERPES SIMPLEX VIRUS
104-129
413-437



PRECURSOR
(TYPE 1/STRAIN 17)


PVGLE_VZVD
GLYCOPROTEIN E
VARICELLA-ZOSTER VIRUS
469-493



PRECURSOR
(STRAIN DUMAS)


PFGLF_BRSVA
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
205-221
265-287
482-504



PRECURSOR
SYNCYTIAL VIRUS (STRAIN




A51908)


PVGLF_BRSVC
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
205-221
265-280
284-506



PRECURSOR
SYNCYTIAL VIRUS (STRAIN




COPENHAGEN)


PVGLF_BRSVR
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY
205-221
265-280
484-506



PRECURSOR
SYNCYTIAL VIRUS (STRAIN




RB94)


PVGLF_CDVO
FUSION GLYCOPROTEIN
CANINE DISTEMPER VIRUS
336-361
398-414
562-589



PRECURSOR
(STRAIN ONDERSTEPOORT)


PVGLF_HRSV1
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
205-221
265-280
484-506



PRECURSOR
SYNCYTIAL VIRUS (SUBGROUP B/




STRAIN 185)


PVGLF_HRSVA
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
205-221
265-280
484-506



PRECURSOR
SYNCYTIAL VIRUS (STRAIN A2)


PVGLF_HRSVL
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
205-221
265-280
484-506



PRECURSOR
SYNCYTIAL VIRUS (SUBGROUP A/




STRAIN LO)


PVGLF_HRSVR
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY
205-221
265-280
484-506



PRECURSOR
SYNCYTIAL VIRUS (STRAIN RSS-2)


PVGLF_MEASE
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN
224-245
286-302
451-477



PRECURSOR
EDMONSTON) and (STRAIN




HALLE)


PVGLF_MEAS1
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN IP-3-CA)
227-248
289-305
454-480



PRECURSOR


PVGLF_MEASY
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN
224-245
286-302
451-477



PRECURSOR
YAMAGATA-1)


PVGLF_MUMP1
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL-1)
5-20
276-292
446-467



PRECURSOR


PVGLF_MUMPM
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN
276-292
446-467



PRECURSOR
MIYAHARA VACCINE)


PVGLF_MUMPR
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN RW)
276-292
446-467



PRECURSOR


PVGLF_MUMPS
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL)
5-20
276-292
446-467



PRECURSOR


PVGLF_NDVA
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN AUSTRALIA-




VICTORIA/32)


PVGLF_NDVB
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN BEAUDETTE C/45)


PVGLF_NDVH3
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN HER/33)


PVGLF_NDVH4
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN B1-HITCHNER/47)


PVGLF_NDVL
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN LAS/46)


PVGLF_NDVM
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN MIYADERA/51)


PVGLF_NDVQ
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN QUEENSLAND/66)


PVGLF_NDVT
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN TEXAS)


PVGLF_NDTVG
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN TEXAS G B/48)


PVGLF_NDVU
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS
273-289



PRECURSOR
(STRAIN ULSTER/67)


PVGLF_PHODV
FUSION GLYCOPROTEIN
PHOCINE DISTEMPER VIRUS
269-285
305-326
367-383
531-558



PRECURSOR


PVGLF_P11HC
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
456-477



PRECURSOR
(STRAIN C39)


PVGLF_P12H
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
450-471



PRECURSOR
(PIV-2)


PVGLF_P12HG
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
450-471



PRECURSOR
(STRAIN GREER)


PVGLF_P12HT
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
450-471



PRECURSOR
(STRAIN TOSHIBA)


PVGLF_P13B
FUSION GLYCOPROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
405-426
453-474



PRECURSOR


PVGLF_P13H4
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
2-20
283-310
453-474



PRECURSOR
(STRAIN N1H 47885)


PVGLF_RINDK
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN
220-241
282-298
447-473



PRECURSOR
KABETE O)


PVGLF_RINDL
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN L)
220-241
282-298
447-473



PRECURSOR


PVGLF_SEND5
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN Z/
460-481



PRECURSOR
HOST MUTANTS)


PVGLF_SENDF
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN FUSHIMI)
460-481



PRECURSOR


PVGLF_SENDH
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HARRIS)
460-481



PRECURSOR


PVGLF_SENDJ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HVJ)
460-481



PRECURSOR


PVGLF_SENDZ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN 2)
460-481



PRECURSOR


PCGLF_SV41
FUSION GLYCOPROTEIN
SIMIAN VIRUS 41
453-474



PRECURSOR


PVGLF_SV5
FUSION GLYCOPROTEIN
SIMIAN VIRUS 5 (STRAIN W3)
401-425
446-467



PRECURSOR


PVGLF_TRTV
FUSION GLYCOPROTEIN
TURKEY RHINOTRACHEITIS
175-191
452-474



PRECURSOR
VIRUS


PVGLG_INHV
SPIKE GLYCOPROTEIN
INFECTIOUS HEMATOPOIETIC
77-99



PRECURSOR
NECROSIS VIRUS (STRAIN




ROUND BUT)


PVGLG_RABVE
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN ERA)
454-474



PRECURSOR


PVGLG_RABVH
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN
372-391
454-474



PRECURSOR
HEP-FLURY)


PVGLG_RABVP
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN PV)
454-474



PRECURSOR


PVGLG_RABVS
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN SAD B19)
454-474



PRECURSOR


PVGLG_RABVT
SPIKE GLYCOPROTEIN
RABIES VIRUS (STRAIN STREET)
454-474



PRECURSOR


PVGLG_TRTV
MAJOR SURFACE
TURKEY RHINOTRACHEITIS
199-216



GLYCOPROTEIN G
VIRUS


PVGLG_VHSV0
SPIKE GLYCOPROTEIN
VIRAL HEMORRHAGIC
406-428



PRECURSOR
SEPTICEMIA VIRUS (STRAIN 07-71)


PVGLH_HCMVA
GLYCOPROTEIN H
HUMAN CYTOMEGALOVIRUS
211-237
365-382
574-598
691-712



PRECURSOR
(STRAIN AD169)


PVGLH_HCMVT
GLYCOPROTEIN H
HUMAN CYTOMEGALOVIRUS
210-236
364-381
573-597
690-711



PRECURSOR
(STRAIN TOWNE)


PVGLH_HSV11
GLYCOPROTEIN H
HERPES SIMPLEX VIRUS
245-262
443-467
803-827



PRECURSOR
(TYPE 1/STRAIN 17)


PVGLH_HSV1E
GLYCOPROTEIN H
HERPES SIMPLEX VIRUS
245-262
443-467
803-827



PRECURSOR
(TYPE 1/STRAIN HFEM)


PVGLH_HSV6G
GLYCOPROTEIN H
HERPES SIMPLEX VIRUS
314-332



PRECURSOR
(TYPE 6/STRAIN GS)


PVGLH_HSVE4
GLYCOPROTEIN H
EQUINE HERPESVIRUS TYPE 4
304-325
814-839



PRECURSOR
(STRAIN 1942)


PVGLH_HSVEB
GLYCOPROTEIN H
EQUINE HERPESVIRUS TYPE 1
297-318
807-832



PRECURSOR
(STRAIN AB4P) and (ISOLATE




HVS25A)


PVGLH_HSVSA
GLYCOPROTEIN H
HERPESVIRUS SAIMIRI
454-479
658-679



PRECURSOR
(STRAIN 11)


PVGLH_MCMVS
GLYCOPROTEIN H
MURINE CYTOMEGALOVIRUS
670-690



PRECURSOR
(STRAIN SMITH)


PVGL1_HCMVA
IE GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS
158-180



PRECURSOR
(STRAIN AD169)


PVGLI_HSV11
GLYCOPROTEIN I
HERPES SIMPLEX VIRUS
43-60




(TYPE 1/STRAIN 17)


PVGLI_HSVEB
GLYCOPROTEIN I
EQUINE HERPESVIRUS TYPE 1
44-63



PRECURSOR


PVGLI_VZVD
GLYCOPROTEIN I
VARICELLA-ZOSTER VIRUS
278-297


(STRAIN DUMAS)


PVGLM-BUNGE
M POLYPROTEIN
BUNYAVIRUS GERMISTON
117-136
197-222



PRECURSOR


PVGLM_BUNL7
M POLYPROTEIN
BUNYAVIRUS LA CROSSE
31-55
81-98
190-211
1325-1345
1387-1401



PRECURSOR
(ISOLATE L74)


PVGLM_BUNSH
M POLYPROTEIN
BUNYAVIRUS SNOWSHOE HARE
31-55
81-98
190-211
1325-1345
1387-1410



PRECURSOR


PVGLM_BUNYW
M POLYPROTEIN
BUNYAMWERA VIRUS
193-218
1379-1404



PRECURSOR


PVGLM_DUGBV
M POLYPROTEIN
DUGBE VIRUS



PRECURSOR


PVGLM_HANTB
M POLYPROTEIN
HANTAAN VIRUS (STAIN B-1)
355-371
692-717
900-915
999-1019



PRECURSOR


PVGLM_HANTH
M POLYPROTEIN
HANTAAN VIRUS (STRAIN HOJO)
499-515
694-718
1000-1020



PRECURSOR


PVGLM_HANTL
M POLYPROTEIN
HANTAAN VIRUS (STRAIN LEE)
499-515
694-719
1001-1021



PRECURSOR


PVGLM_HANTV
M POLYPROTEIN
HANTAAN VIRUS (STRAIN 76-118)
499-515
694-719
1001-1021



PRECURSOR


PVGLM_INSV
M POLYPROTEIN
IMPATIENS NECROTIC SPOT
18-44
269-293
348-367
531-551
815-841



PRECURSOR
VIRUS (INSV)


PVGLM_PHV
M POLYPROTEIN
PROSPECT HILL VIRUS
152-171



PRECURSOR


PVGLM_PTPV
M POLYPROTEIN
PUNTA TORO PHLEBOVIRUS
743-765
997-1016
1275-1302



PRECURSOR


PVGLM_PUUMH
M POLYPROTEIN
PUUMALA VIRUS (STRAIN
155-174
509-525
712-729



PRECURSOR
HALLNAS B1)


PVGLM_PUUMS
M POLYPROTEIN
PUUMALA VIRUS (STRAIN
155-174
509-525
712-729
1092-1117



PRECURSOR
SOTKAMO)


PVGLM_RVRF
M POLYPROTEIN
RIFT VALLEY FEVER VIRUS
53-80
344-368
830-856



PRECURSOR


PVGLM_RVFVZ
M POLYPROTEIN
RIFT VALLEY FEVER VIRUS
53-80
344-368
830-856
1156-1176



PRECURSOR
(STRAIN ZH-548-M12)


PVGLM_SEOU8
M POLYPROTEIN
SEOUL VIRUS (STRAIN 80-39)
355-371
692-717
900-915
999-1019



PRECURSOR


PVGLM_SEOUR
M POLYPROTEIN
SEOUL VIRUS (STRAIN R22)
355-371
693-718
901-916
1000-1020



PRECURSOR


PVGLM_SEOUS
M POLYPROTEIN
SEOUL VIRUS (STRAIN ST-11)
355-371
692-717
900-915
999-1019



PRECURSOR
(SAPPORO RAT VIRUS)


PVGLM_UUK
M POLYPROTEIN
UUKUNIEMI VIRUS
561-585
655-674
826-842
925-952
966-989



PRECURSOR


PVGLP_VEB
PEPLOMER GLYCOPROTEIN
BERNE VIRUS
430-452
869-885
1099-1124
1546-1568



PRECURSOR


PVGLX_HSVEB
GLYCOPROTEIN X
EQUINE HERPESVIRUS TYPE 1




(STRAIN AB4P)


PVGLX_HSVEK
GLYCOPROTEIN GX
EQUINE HERPESVIRUS TYPE 1



PRECURSOR
(STRAIN KENTUCKY A)


PVGLX_HSVEL
GLYCOPROTEIN GX
EQUINE HERPESVIRUS TYPE 1




(STRAIN KENTUCKY A)


PVGLX_PRVR1
SECRETED GLYCOPROTEIN
PESUDORABIES VIRUS
149-176



GX
(STRAIN RICE)


PVGLY_JUNIN
GLYCOPROTEIN
JUNIN AREANVIRUS
12-38



POLYPROTEIN PRECURSOR


PVGLY_LASSG
GLYCOPROTEIN
LASSA VIRUS (STRAIN GA39)
12-35
238-259
427-449



POLYPROTEIN PRECURSOR


PVGLY_LASSJ
GLYCOPROTEIN
LASSA VIRUS (STRAIN JOSIAH)
12-35
238-259
427-449



POLYPROTEIN PRECURSOR


PVGLY_LYCVA
GLYCOPROTEIN
LYMPHOCYTIC
12-35



POLYPROTEIN PRECURSOR
CHORIOMENINGITIS VIRUS




(STRAIN ARMSTRONG)


PVGLY_LYCVW
GLYCOPROTEIN
LYMPHOCYTIC
12-35
89-108



POLYPROTEIN PRECURSOR
CHORIOMENINGITIS VIRUS




(STRAIN WE)
GLYCOPROTEIN
MOPEIA VIRUS
12-35
425-447



POLYPROTEIN PRECURSOR


PVGLY_PIARV
GLYCOPROTEIN
PICHINDE AREANVIRUS
12-38
441-466



POLYPROTEIN PRECURSOR


PVGLY_TACV
GLYCOPROTEIN
TACARIBE VIRUS
12-38



POLYPROTEIN PRECURSOR


PVGLY_TACV5
GLYCOPROTEIN
TACARIBE VIRUS (STRAIN V5)
12-38



POLYPROTEIN PRECURSOR


PVGLY_TACV7
GLYCOPROTEIN
TACARIBE VIRUS (STRAIN V7)
12-38



POLYPROTEIN PRECURSOR


PVGLY_TACVT
GLYCOPROTEIN
TACARIBE VIRUS (STRAIN TRVL
12-38



POLYPROTEIN PRECURSOR
11598)


PVGNB_CPMV
GENOME POLYPROTEIN B
COWPEA MOSAIC VIRUS
141-161
569-594
757-783
1110-1135
1165-1184


PVGNM_CPMN
GENOME POLYPROTEIN M
COWPEA MOSAIC VIRUS
311-335
741-764


PVGP2_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
657-681



ANTIGEN GP220
B95-8) (HUMAN HERPESVIRUS 4)


PVGP3_EBV
ENVELOPE
EPSTEIN-BARR VIRUS (STRAIN
854-878



GLYCOPROTEIN GP340
B95-8) (HUMAN HERPESVIRUS 4)


PVGP8_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN
67-88



ANTIGEN GP85
B95-8) (HUMAN HERPESVIRUS 4)


PVGP_EBOV
STRUCTURAL
EBOLA VIRUS
34-52
537-561
653-675



GLYCOPROTEIN PRECURSOR


PVGP_MABVM
STRUCTURAL
MARBURG VIRUS (STRAIN
538-562
607-627



GLYCOPROTEIN PRECURSOR
MUSOKE)


PVGP_MAMVP
STRUCTURAL
MARBURG VIRUS (STRAIN POPP)
538-562
607-627



GLYCOPROTEIN PRECURSOR


PVH01_VACCC
PROTEIN-TYROSINE
VACCINIA VIRUS (STRAIN
76-92
105-121



PHOSPHATASE
COPENHAGEN)


PVH01_VACCV
PROTEIN-TYROSINE
VACCINIA VIRUS (STRAIN WR)
76-92
105-121



PHOSPHATASE


PVHO1_VARV
PROTEIN-TYROSINE
VARIOLA VIRUS
76-92
105-121



PHOSPHATASE


PVH07_VACCV
LATE PROTEIN H7
VACCINIA VIRUS (STRAIN WR)
70-97


PVH07_VARV
LATE PROTEIN H7
VARIOLA VIRUS
70-97


PVHEL_FXMV
PROBABLE HELICASE
FOXTAIL MOSAIC VIRUS
182-205


PVHEL_PMV
PROBABLE HELICASE
PAPAYA MOSAIC POTEXVIRUS
153-168


PV101_VACCC
PROTEIN I1
VACCINIA VIRUS (STRAIN
120-135




COPENHAGEN)


PV101_VARB
PROTEIN I1
VARIOLA VIRUS
120-135


PV103_VACCC
PROTEIN I3
VACCINIA VIRUS (STRAIN
194-220




COPENHAGEN)


PV103_VACCV
PROTEIN I3
VACCINIA VIRUS (STRAIN WR)
104-220


PV103_VARV
PROTEIN I3
VARIOLA VIRUS
194-220


PV106_VACCV
PROTEIN I6
VACCINIA VIRUS (STRAIN WR)
106-128
133-155


PV106_VARV
PROTEIN I6
VARIOLA VIRUS
106-128
133-155


PV107_VACCC
PROTIEN I7
VACCINIA VIRUS (STRAIN
13-34
344-367




COPENHAGEN)


PV107_VACCV
PROTEIN I7
VACCINIA VIRUS (STRAIN WR)
13-34
344-367


PV107_VARV
PROTEIN I7
VARIOLA VIRUS
13-34
344-367


PV108_VACCC
PUTATIVE RNA
VACCINIA VIRUS (STRAIN
196-212
418-438



HELICASE 18
COPENHAGEN)


PV108_VACCV
PUTATIVE RNA
VACCINIA VIRUS (STRAIN WR)
196-212
418-438



HELICASE 18


PV108_VARV
PUTATIVE RNA
VARIOLA VIRUS
196-212
418-438



HELICASE 18


PVIE1_HCMVA
55 KD IMMEDIATE-EARYLY
HUMAN CYTOMEGALOVIRUS
77-100
333-350



PROTEIN 1
(STRAIN AD169)


PVIE1_HCMVT
55 KD IMMEDIATE-EARYLY
HUMAN CYTOMEGALOVIRUS
77-100
333-350



PROTEIN 1
(STRAIN AD169)


PVIE2_HCMVA
45 KD IMMEDIATE-EARYLY
HUMAN CYTOMEGALOVIRUS
14-32
389-406



PROTEIN 2
(STRAIN AD169)


PVIE2_HCMVT
45 KD IMMEDIATE-EARYLY
HUMAN CYTOMEGALOVIRUS
14-32
388-405



PROTEIN 2
(STRAIN TOWNE)


PVIE2_MCMVS
IMMEDIATE-EARLY
MUTINE CYTOMEGALOVIRUS
251-272



PROTEIN 2
(STAIN SMITH)


PVIE3_HCMVT
30 KD IMMEDIATE-EARLY
HUMAN CYTOMEGALOVIRUS
14-32



PROTEIN 2
(STRAIN TOWNE)


PVIEN_NPVAC
IMMEDIATE-EARLY
AUTOGRAPHA CALIFORNICA
100-116
273-290



PROTEIN 1E-N
NUCLEAR POLYHEDROSIS VIRUS


PVIMP_EBV
PROB INTEGRAL MEMBRANE
EPSTEIN-BARR VIRUS
75-100
125-152
203-222



PROTEIN BBRF3
(STRAIN B95-8)


PVIMP_HCMVA
PROBABLE INTEGRAL
HUMAN CYTOMEGALOVIRUS
68-89
190-217



MEMBRANE PROTEIN
(STRAIN AD169)


PVIMP_HSV11
PROBABLE INTEGRAL
HERPES SIMPLEX VIRUS
83-110
250-270



MEMBRANE PROTEIN
(TYPE 1/STRAIN 17)


PVIMP_HSVEB
PROBABLE INTEGRAL
EQUINE HERPESVIRUS TYPE 1
24-49
93-120
145-172
247-263
301-321
332-358



MEMBRANE PROTEIN
(STRAIN AB4P)


PVIMP_HSVSA
INTEGRAL MEMBRANE
HERPESVIRUS SAIMIRI
76-101
313-331



PROTEIN
(STRAIN 11)


PVIMP_VZVD
PROBABLE INTEGRAL
VARICELLA-ZOSTER VIRUS
21-47
154-181
230-252



MEMBRANE PROTEIN
(STRAIN DUMAS)


PVJ01_VACCC
PROTEIN J1
VACCINIA VIRUS (STRAIN
89-110




COPENHAGEN)


PVJ01_VACCV
PROTEIN J1
VACCINIA VIRUS (STRIAN WR)
89-110


PVJ01_VARV
PROTEIN J1
VARIOLA VIRUS
89-110


PVK04_VACCC
PROTEIN K4
VACCINIA VIRUS (STRAIN
87-113
208-234
319-337




COPENHAGEN)


PVK04_VACCV
PROTEIN K4
VACCINIA VIRUS (STRAIN WR)
87-113
208-234
319-337


PVK05_VACCC
PROTEIN K5
VACCINIA VIRUS (STRAIN
106-133




COPENHAGEN)


PVL02_VACCC
PROTEIN L2
VACCINIA VIRUS (STRAIN
39-61




COPENHAGEN)


PVL02_VACCV
PROTEIN L2
VACCINIA VIRUS (STRAIN WR)
39-61


PVL02_VARV
PROTEIN L2
VARIOLA VIRUS
39-61


PVL03_VACCC
PROTEIN L3
VACCINIA VIRUS (STRAIN
148-164
186-208
292-315




COPENHAGEN)


PVL03_VACCV
PROTEIN L3
VACCINIA VIRUS (STRAIN WR)
148-164
186-208
292-315


PVL03_VARV
PROTEIN L3
VARIOLA VIRUS
147-163
/ 185-207
291-314


PVL05_VACCV
PROTEIN L5
VACCINIA VIRUS (STRAIN WR),
16-39




AND (STRAIN COPENHAGEN)


PVL05_VARV
PROTEIN L5
VARIOLA VIRUS
16-39


PVL1_CRPVK
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE)
299-317




PAPILLOMAVIRUS (STRAIN




KANSAS)


PVL1_HPV18
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS
28-55




TYPE 18


PVL1_HPV41
PROBABLE L1 PROTEIN
HUMAM PAPILLOMAVIRUS
38-63




TYPE 41


PVL1_REOVD
MAJOR CORE PROTEIN
REOVIRUS (TYPE 3/STRAIN
327-346
351-366
752-774



LAMBDA 1
DEARING)


PVL2_HPV08
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
254-270




TYPE 8


PVL2_HPV11
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
32-58




TYPE 11


PVL2_HPV13
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59




TYPE 13


PVL2_HPV16
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
34-60




TYPE 16


PVL2_HPV18
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59




TYPE 18


PVL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
213-228




TYPE 1A


PVL2_HSV2A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
88-114




TYPE 2A


PVL2_HPV31
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
34-60
443-462




TYPE 31


PVL2_HPV33
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59
99-114




TYPE 33


PVL2_HPV35
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
34-60




TYPE 35


PVL2_HPV41
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
39-58
414-436




TYPE 41


PVL2_HPV42
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59
344-370




TYPE 42


PVL2_HPV47
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
250-265




TYPE 47


PVL2_HPV57
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
32-58




TYPE 57


PVL2_HPV58
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59
99-114




TYPE 58


PVL2_HPV6B
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS
33-59




TYPE 6B


PVL2_PAPVE
PROBABLE L2 PROTEIN
EUROPEAN ELK
30-56




PAPILLOMAVIRUS


PVL2_RHPV1
PROBABLE L2 PROTEIN
RHESUS PAPILLOMAVIRUS
45-71




TYPE 1


PVL3_HPV5B
PROBABLE L3 PROTEIN
HUMAN PAPILLOMAVIRUS
6-28




TYPE 5B


PVL3_REOVD
MINOR CORE PROTEIN
REOVIRUS (TYPE 3/STRAIN
714-737



LAMBDA 3
DEARING


PVL3_REOVJ
MINOR CORE PROTEIN
REOVIRUS (TYPE 2/STRAIN
714-737
1213-1236



LAMBDA 3
D5/JONES)


PVL3_REOVL
MINOR CORE PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
714-737



LAMBDA 3


PVL96_IRV1
L96 PROTEIN
TIPULA IRIDESCENT VIRUS (TIV)
144-170
196-220
686-711
845-861




(INSECT IRIDESCENT VIRUS




TYPE 1)


PVM01_VACCC
PROTEIN M1
VACCINIA VIRUS (STRAIN
134-159
177-195
281-302




COPENHAGEN)


PVM01_VACCV
PROTEIN M1
VACCINIA VIRUS (STRAIN WR)
83-108
126-144
230-251


PVM01_VARV
PROTEIN M1
VARIOLA VIRUS
81-106
124-142
228-249


PVM1_REOVD
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
141-168
227-245
280-304
324-347
414-436
454-477



PROTEIN MU-2
DEARING)


PVM1_REOVL
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
141-168
227-245
280-304
414-436
454-477



PROTEIN MU-2


PVM21_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
168-192



PROTEIN MU-1/MU-1C
DEARING)


PVM22_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
168-192



PROTEIN MU-1/MU-1C
DEARING)


PVM2_REOVJ
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
168-192



PROTEIN MU-1/MU-1C
D5/JONES)


PVM2_REOVL
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN
168-192



PROTEIN MU-1/MU-1C
LANG)


PVM3_REOVD
MAJOR NONSTRUCTURAL
REOVIRUS (TYPE 3/STRAIN
304-326
521-540



PROTEIN MU-NS
DEARING)


PVMAT_BRSVA
MATRIX PROTEIN
BOVINE RESPIRATORY
37-62




SUNCYTIAL VIRUS (STRAIN




A51908)


PVMAT_CDVO
MATRIX PROTEIN
CANINE DISTEMPER VIRUS
148-165
283-309




(STRAIN COPENHAGEN)


PVMAT_HRSVA
MATRIX PROTEIN
HUMAN RESPIRATORY
44-62
139-160




SYNCYTIAL VIRUS (STRAIN A2)


PVMAT_LPMV
MATRIX PROTEIN
LA PIEDAD-MICHOACAN-MEXICO
311-338




VIRUS


PVMAT_MEASE
MATRIX PROTEIN
MEASLES VIRUS (STRAIN
283-309




EDMONSTON)


PVMAT_MEASH
MATRIX PROTEIN
MEASLES VIRUS (STRAIN
283-309




HALLE)


PVMAT_MEASI
MATRIX PROTEIN
MEASLES VIRUS (STRAIN
87-111




IP-3-CA)


PVMAT_MEASU
MATRIX PROTEIN
MEASLES VIRUS (STRAIN HU2)
283-309


PVMAT_MUMP1
MATRIX PROTEIN
MUMPS VIRUS (STRAIN SBL-1)
191-207
227-250
310-330


PVMAT_MUMPS
MATRIX PROTEIN
MUMPS VIRUS (STRAIN SBL)
191-207
227-250
310-330


PVMAT_NDVA
MATRIX PROTEIN
NEWCASTLE DIESEASE VIRUS
135-151
190-208
309-329




(STRAIN AUSTRAULIA-




VICTORIA/32)


PVMAT_NDVB
MATRIX PROTEIN
NEWCASTLE DIESEASE VIRUS
135-151
190-208
309-329




(STRAIN BEAUDETTE C/45)


PVMAT_PIIHC
MATRIX PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
195-217




(STRAIN C39)


PVMAT_P12HT
MATRIX PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
132-154
189-205
308-328




(STRAIN TOSHIBA) (PIV-2)


PVMAT_P14HA
MATRIX PROTEIN
HUMAN PARAINFLUENZA 4A
312-332




VIRUS (STRAIN TOSHIBA) (PIV-4A)


PVMAT_P14HB
MATRIX PROTEIN
HUMAN PARAINFLUENZA 4B
312-332




VIRUS (STRAIN 68-333) (PIV-4B)


PVMAT_RINDK
MATRIX PROTEIN
RINDERPEST VIRUS (STRAIN
200-221
239-260
283-309




KABETE O)


PVMAT_SENDF
MATRIX PROTEIN
SENDAI VIRUS (STRAIN FUSHIMI)
195-217


PVMAT_SENDH
MATRIX PROTEIN
SENDAI VIRUS (STRAIN HARRIS)
195-217


PVMAT_SENDZ
MATRIX PROTEIN
SENDAI VIRUS (STRAIN Z)
195-217


PVMAT_SSPVB
MATRIX PROTEIN
SUBACUTE SCLEROSING
283-309
314-338




PANENCEPHALITIS VIRUS




(STRAIN BIKEN)


PVMAT_SV41
MATRIX PROTEIN
SIMINA VIRUS 41
132-154
189-205
308-328


PVMAT_SV5
MATRIX PROTEIN
SIMIAN VIRUS 5 (STRIAN W3)
98-114
132-148
308-335


PVMAT_SVCV
MATRIX PROTEIN
SPRING VIREMIA OF CARP VIRUS
141-167




(RHABDOVIRUS CARPIA)


PVMAT_TRTV
MATRIX PROTEIN
TURKEY RHINOTRACHEITIS
122-143




VIRUS


PVME1_CVBM
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS
9-36
137-161
171-190




(STRAIN MEBUS)


PVME1_CVH22
E1 GLYCOPROTEIN
HUMAN CORONAVIRUS
136-155




(STRAIN 229E)


PVME1_CVHOC
E1 GLYCOPROTEIN
HUMAN CORONAVIRUS
9-36
64-85
137-161



(STRAIN OC43)


PVME1_CVMA5
E1 GLYCOPROTEIN
MURINE COROANVIRUS MHV
10-37




(STRAIN A59)


PVEM1-CVMJH
E1 GLYCOPROTEIN
MURINE COROANVIRUS MHV
10-37




(STRAIN JHM)


PVME1_CVPFS
E1 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
174-193



PRECURSOR
GASTROENTERITIS CORONA-




VIRUS (STRAIN


PVME1_CVPPU
E1 GLYCOPROTEIN
PORCINE TRANSMISSIBLE
169-193
174-193



PRECURSOR
GASTROENTERITIS CORONA-




VIRUS (STRAIN


PVME1_CVPRM
E1 GLYCOPROTEIN
PORCINE RESPIRATORY
174-193



PRECURSOR
CORONAVIRUS (STRAIN RM4)


PVME1_CVTKE
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS
9-36
137-161
171-190


PVME1_IBV6
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
74-98



VIRUS (STRAIN 6/82)


PVME1_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
74-101



VIRUS (STRAIN BEAUDETTE)


PVME1_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
74-101



VIRUS (STRAIN BEAUDETTE M42)


PVME1_IBVK
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS
74-98



VIRUS (STRAIN KB8523)


PVMEM_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIRUS
131-157
178-203



PROTEIN
(STRAIN B95-8)


PVMP_CAMVC
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201




(STRAIN CM-1841)


PVMP_CAMVD
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201




(STRAIN D/H)


PVMP_CAMVE
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201




(STRAIN BBC)


PVMP_CAMVN
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201




(STRAIN NY8153)


PVMP_CAMV5
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201




(STRAIN STRASBOURG)


PVMP_CAMVW
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS
118-134
147-164
183-201




STRAIN W260)


PVMP_CERV
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS
293-318


PVMP_FMVD
MOVEMENT PROTEIN
FIGWORT MOSAIC VIRUS
115-131
180-198




(STRAIN DXS)


PVMP_SOCMV
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE
122-147
273-299




VIRUS


PVMSA_HPBDB
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS
201-228
269-295



PRECURSOR
(BROWN SHANGHAI DUCK




ISOLATE S5)


PVMSA_HPBDC
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS
194-221
268-294



PRECURSOR
(STRAIN CHINA)


PVMSA_HPBDU
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS
157-184
231-257



PRECURSOR


PVMSA_HPBDW
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS
194-221
269-295



PRECURSOR
(WHITE SHANGHAI DUCK




ISOLATE S31)


PVMSA_HPBGS
MAJOR SURFACE ANTIGEN
GROUND SQUIRREL HEPATITIS
209-236
271-295
380-395



PRECURSOR
VIRUS


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN
HERON HEPATITIS B VIRUS
236-262
293-320



PRECURSOR


PVMSA_HPBV0
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
11-28
70-96


PVMSA_HPBV2
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
185-202
244-270



PRECURSOR


PVMSA_HPBV9
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
244-270



PRECURSOR
(SUBTYPE ADW/STRAIN 991)


PVMSA_HPBVA
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259



PRECURSOR
(STRAIN ALPHA)


PVMSA_HPBVD
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
11-28
70-96




(SUBTYPE AD)


PVMSA_HPBV1
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
233-259



PRECURSOR
(SUBTYPE ADW/STRAIN




INDONESIA/PIDW420)


PVMSA_HPBVJ
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259



PRECURSOR
(SUBTYPE ADW/STRAIN




JAPAN/PJDW233)


PVMSA_HPBVL
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259



PRECURSOR
(STRAIN LSH/CHIMPANZEE




ISOLATE


PVMSA_HPBVN
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
11-28
70-96




(SUBTYPE ADR/STRAIN NC-1)


PVMSA_HPBVO
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259



PRECURSOR
(SUBTYPE ADW/STRAIN IKINAWA




PODW282)


PVMSA_HPBVP
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
185-202
244-270



PRECURSOR
(SUBTYPE ADW/STRAIN




PHILIPPINO/PFD2294)


PVMSA_HPBVR
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
185-202
244-270



PRECURSOR
(SUBTYPE ADR)


PVMSA_HPBVS
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
11-28
70-96




(SUBTYPE AR)


PVMSA_HPBVW
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259



PRECURSOR
(SUBTYPE ADW)


PVMSA_HPBVY
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
174-191
233-259



PRECURSOR
(SUBTYPE ADW)


PVMSA_WHV1
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 1
207-234
269-293
378-393



PRECURSOR


PVMSA_WHV59
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS
212-239
274-298
383-398



PRECURSOR
VIRUS 59


PVMSA_WHV7
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 7
212-239
274-398
383-398



PRECURSOR


PVMSA_WHV8
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
212-239
274-298
383-398



PRECURSOR


PVMSA_WHV81
PROB MAJOR SURFACE
WOODCHUCK HEPATITIS VIRUS 8
212-239
274-298
383-398



ANTIGEN PREC
(INFECTIOUS CLONE)


PVMSA_WHVW6
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS
125-149
234-249



PRECURSOR
W64 (ISOLATE PWS23)


PVMT2_IAANN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/ANN ARBOR/6/60)


PVMT2_IABAN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/BANGKOK/1/79)


PVMT2_IAFOW
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/FORT WARREN/1/50)


PVMT2_IAFPR
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/FOWL PLAGUE VIRUS/




ROSTOCK/34)


PVMT2_IAFPW
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/FOWL PLAGUE VIRUS/




WEYBRIDE)


PVMT2_IALE1
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/LENINGRAD/134/57)


PVMT2_IALE2
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/LENINGRAD/134/17/57)


PVMT2_IAMAN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/MALLARD/NEW




YORK/6750/78)


PVMT2_IAPUE
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/PUERTO RICO/8/34)


PVMT2_IASIN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/SINGAPORE/1/57)


PVMT2_IAUDO
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/UDORN/307/72)


PVMT2_IAWIL
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS
25-46




(STRAIN A/WILSON-SMITH/33)


PVMT9_MYXVL
MT-9 PROTEIN
MYXOMA VIRUS (STRAIN
226-241




LAUSANNE)


PVN34_ROTBS
NONSTRUCTURAL
BOVINE ROTAVIRUS (GROUP C/
334-351



PROTEIN NS34
STRAIN SHINTOKU)


PVNBP_PVSP
10 7 KD PROTEIN
POTATO VIRUS (STRIAN
21-36




PERUVIAN)


PVNB_INBBE
NB GLYCOPROTEIN
INFLUENZA B VIRUS
13-39




(STRAIN B/BEIJING/1/87)


PVNB_INBHK
NB GLYCOPROTEIN
INFLUENZA B VIRUS
13-39




(STRAIN B/HONK KONG/8/73)


PVNS1_IAMAN
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192



NS1
(STRAIN A/MALLARD/NEW




YORK/6750/78)


PVNS1_IAMAO
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192



NS1
(STRAIN A/MALLARD/NEW




YORK/6874/78)


PNVS1_IAMUN
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
28-47
164-189



NS1
(STRAIN A/MYNAH/HANEDA-




THAI/76)


PVNS1_IAP10
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
167-192



NS1
(STRAIN A/PINTAIL/ALBERTA/




119/79)


PVNS1_IAPI1
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192



NS1
(STRAIN A/PINTAIL/ALBERTA/




121/79)


PVNS1_IAPI2
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192



NS1
(STRAIN A/PINTAIL/ALBERTA/




268/78)


PVNS1_IAPI3
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192



NS1
(STRAIN A/PINTAIL/ALBERTA/




358/79)


PVNS1_IAPUE
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
114-137
167-192



NS1
(STRAIN A/PUERTO RICO/8/34)


PVNS1_IATKB
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192



NS1
(STRAIN A/TURKEY/BETHLEHEM-



GLILIT/1492-B


PVNS1_IATKC
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192



NS1
(STRAIN A/TURKEY/CANADA/63)


PVNS1_IATKR
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50



NS1
(STRAIN A/TURKEY/OREGON/71)


PVNS1_IATRS
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
28-47
164-189



NS1
(STRAIN A/TERN/SOUTH




AFRICA/61)


PVNS1_IATRT
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192



NS1
(STRAIN A/TERN/TURKMENIA/




18/72)


PVNS1_IAUDO
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
114-137
167-192



NS1
(STRAIN A/UDORN/307/72)


PVNS1_IAUSS
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
114-137
167-192



NS1
(STRAIN A/USSR/90/77)


PVNS1_IAZI1
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
31-50
167-192



NS1
(STRAIN A/SWINE/IOWA/15/30)


PVNS1_INCAA
NONSTRUCTURAL PROTEIN
INFLUENZA C VIRUS
222-248



NS1


PVNS1_INCCA
NONSTRUCTURAL PROTEIN
INFLUENZA C VIRUS
222-248



NS1


PVNS2_BTV10
NONSTRUCTURAL PROTEIN
BLUETONGUE VIRUS (SEROTYPE
145-161
201-223



NS2
10/ISOLATE USA)


PVNS2_BTV17
NONSTRUCTURAL PROTEIN
BLUETONGUE VIRUS (SEROTYPE
145-161
201-223



NS2
17/ISOLATE USA)


PVNS2_BTV1S
NONSTRUCTURAL PROTEIN
BLUETONGUE VIRUS (SEROTYPE
145-161



NS2
1/ISOLATE SOUTH AFRICA)


PVNS2_BTV1X
NONSTRUCTURAL PROTEIN
BLUETONGUE VIRUS (SEROTYPE
145-161



NS2
10)


PVNS2_EHDV2
NONSTRUCTURAL PROTEIN
EPIZOOTIC HEMORRHAGIC
145-161



NS2
DISEASE VIRUS (SEROTYPE 2/




STRAIN AL


PVNS2_IAPUE
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
3-28



NS2
(STRAIN A/PUERTO RICO/8/34)


PVNS2_IATRS
NONSTRUCTURAL PROTEIN
INFLUENZA A VIRUS
56-80



NS2
(STRAIN A/TERN/SOUTH




AFRICA/61)


PVNS2_PVM
NONSTRUCTURAL PROTEIN 2
PNEUMONIA VIRUS OF MICE
52-68


PVNS3_CVPFS
NONSTRUCTURAL PROTEIN
PORCINE TRANSMISSIBLE
177-201



3-1
GASTROENTERITIS CORONA-




VIRUS (STRAIN


PVNS3_CVPPU
NONSTRUCTURAL PROTEIN
PORCINE TRANSMISSIBLE
98-122



3-1
GASTROENTERITIS CORONAVIRUS




(STRAIN


PVNS3_CVPRM
NONSTRUCTURAL PROTEIN
PORCINE RESPIRATORY
177-201



3-1
CORONAVIRUS (STRAIN RM4)


PVNS3_RSV
NONSTRUCTURAL PROTEIN
RICE STRIPE VIRUS
16-40




NS3


PVNS4_CVH22
NONSTRUCTURAL PROTEIN 4
HUMAN CORONAVIRUS
84-100




(STRAIN 229E)


PVNS4_CVMS
NONSTRUCTURAL PROTEIN 4
MURINE CORONAVIRUS MHV
17-38




(STRAIN S)


PVNS4_CVPFS
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE
4-31




GASTROENTERITIS CORNOA-




VIRUS (STRAIN


PVNS4_CVPPU
NONSTRUCTURAL PROTEIN 4
PROCINE TRANSMISSIBLE
4-31




GASTROENTERITIS CORNOA-




VIRUS (STRAIN


PVNS4_CVPRM
NONSTRUCTURAL PROTEIN 4
PORCINE REPSIRATORY
4-31




CORONAVIRUS (STRAIN RM4)


PVNS4_MSTV
NONSTRUCTURAL PROTEIN
MAIZE STRIPE VIRUS
41-56



NS4


PVNS4_RSV
NONSTRUCTURAL PROTEIN
RICE STRIPE VIRUS
41-56
60-82
152-167



NS4


PVNS7_CVFE3
NONSTRUCTURAL PROTEIN 7
FELINE ENTERIC CORONAVIRUS
59-84




(STRAIN 79-1683)


PVNS7_FIPV
NONSTRUCTURAL PROTEIN 7
FELINE INFECTIOUS PERITONITIS
59-84




VIRUS (STRAIN 79-1146)


PVNSC_PI1HB
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
76-92




(STRAIN C35)


PVNSC_PI1HC
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
76-92




(STRAIN C39)


PVNSC_PI1HD
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
76-92
179-197




(STRAIN CI-5/73)


PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS
76-92




(STRAIN CI-14/83)


PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/BUDGERIGAR/HOKKAIDO/1/77)


PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/CALIFORNIA/10/78)


PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/CHICKEN/GERMANY/N/49)


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/CHICKEN/PENNSYLVANIA/1/83)


PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/AUSTRALIA/749/80


PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/BEIJING/1/78)


PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/CZECHOSLOVAKIA/56)


PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/ENGLAND/1/56)


PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/ENGLAND/1/62)


PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/HONG KONG/7/75)


PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/MEMPHIS/928/74)


PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/MANITOBA/1/53)


PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/NEW ZEALAND/31/76)


PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/DUCK/UKRAINE/2/60)


PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/ENGLAND/19/55)


PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/FORT WARREN/1/50)


PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/FOWL PLAGUE VIRUS/




DOBSON/DUTC


PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/FOWL PLAGUE VIRUS/




ROSTOCK/34)


PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/GREY TEAL/AUSTRALIA/2/79)


PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/GULL/MARYLAND/5/77)


PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/GULL/MARYLAND/704/77)


PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/GULL/MARYLAND/1824/78)


PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/GULL/MARYLAND/1815/79)


PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/GULL/ASTRAKHAN/227/84)


PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/GULL/MASSACHUSETTS/26/80)


PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/GULL/MINNESOTA/945/80)


PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/HICKOX/40)


PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/EQUINE/JILLIN/1/89)


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/EQUINE/LONDON/1416/73)


PVNUC_IAHMI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/EQUINE/MIAMI/1/63)


PVNUC_IAHOI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/HONG KONG/1/68)


PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/HONG KONG/5/83)


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/EQUINE/PRAGUE/1/56)


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/EQUINE/TENNESSEE/5/86)


PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/KEIV/59/79)


PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/LENINGRAD/54/1)


PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/MALLARD/ASTRAKHAN/244/82)


PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/MALLARD/NEW YORK/6750/78)


PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/MINK/SWEDEN/84)


PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/NT/60/68)


PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/OHIO/4/83)


PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/PARROT/ULSTER/73)


PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/PUERTO RICO/8/34)


PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/RUDDY TURNSTONE/NEW




JERSEY/47/


PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/SEAL/MASSCHUSETTES/1/80)


PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/SHEARWATER/AUSTRALIA/72)


PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/SINGAPORE/1/57)


PVNUC_IATE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/TEAL/ICELAND/29/80)


PVNCU_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/TURKEY/MINNESOTA/1661/81)


PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/TURKEY/ONTARIO/7732/66)


PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/TERN/SOUTH AFRICA/61)


PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/TERN/TURKEYMENAI/18/72)


PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/TEXAS/1/77)


PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/UDORN/307/72)


PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/USSR/90/77)


PVNUC_IAVIS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
173-197




A/VICTORIA/5/68)


PVP23_VZVD
PROBABLE CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS
117-132



VP23
(STRAIN DUMAS)


PVP26_NPVAC
P26 PROTEIN
AUTOGRAPHA CALIFORNICA
12-31
58-76
117-141




NUCLEAR POLYHEDROSIS VIRUS


PVP2_AHSV4
OUTER CAPSID PROTIEN
AFRICAN HORSE SICKNESS VIRUS
868-891
974-994



VP2
(SEROTYPE 4/STRAIN VACCINE)


PVP2_BTV10
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
361-381
399-424
564-586
829-849



VP2
10/ISOLATE USA


PVP2_BTV11
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
361-381
399-424
829-849



VP2
11/ISOLATE USA)


PVP2_BTV13
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
362-382
420-438
617-642
657-676



VP2
13/ISOLATE USA)


PVP2_BTV17
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
361-381



VP2
17/ISOLATE USA)


PVP2_BTV1A
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
420-438
654-681



VP2
1/ISOLATE AUSTRALIA


PVP2_BTV1S
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
14-31
117-140
420-438
654-681



VP2
1/ISOLATE SOUTH AFRICA)


PVP2_EHDV1
OUTER CAPSID PROTEIN
EPIZOOTIC HEMORRHAGIC
153-168
229-252



VP2
DISEASE VIRUS (SEROTYPE 1)


PVP2_ROTBR
RNA-BINDING PROTEIN
BOVINE ROTAVIRUS (STRAIN RF)
301-317
334-360
522-543
673-699
764-789



VP2


PVP2_ROTBU
RNA-BINDING PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
301-317
334-360
523-544
765-790



VP2


PVP2_ROTHW
RNA-BINDING PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
309-325
432-363
532-553
674-700
774-799



VP2
1/STRAIN WA)


PVP2_ROTPC
RNA-BINDING PROTEIN
PORCINE ROTAVIRUS (GROUP C/
51-75
303-319
408-425
514-535
665-691



VP2
STRAIN COWDEN)


PVP2_ROTS1
RNA-BINDING PROTEIN
SIMIAN 11 ROTAVIRUS
34-57
219-240
302-318
335-360
523-544
674-700
765-790



VP2
(STRAIN SA11)


PVP30_MABVP
MINOR NUCLEOPROTEIN
MARBURG VIRUS (STRAIN
50-75



VP30
MUSOKE)


PVP32_ASFB7
PHOSPHOPROTEIN P32
AFRICAN SWINE FEVER VIRUS
174-197




(STRAIN BA71V)


PVP35_EBOV
POLYMERASE COMPLEX
EBOLA VIRUS
233-256



PROTEIN VP35


PVP35_MAMVM
POLYMERASE COMPLEX
MARBURG VIRUS (STRAIN
49-75
78-104



PROTEIN VP35
MUSOKE)


PVP35_MABVP
POLYMERASE COMPLEX
MARBURG VIRUS (STRAIN
49-75
78-104



VP35
POPP)


PVP35_VACCC
IMMUNODOMINANT
VACCINIA VIRUS (STRAIN
278-304



ENVELOPE PROTEIN P35
COPENHAGEN)


PVP35_VACCV
IMMUNODOMINANT
VACCINIA VIRUS (STRAIN WR)
278-304



ENVELOPE PROTEIN P35


PVP35_VARV
IMMUNODOMINANT
VARIOLA VIRUS
279-305



ENVELOPE PROTEIN P35


PVP38_HSVMG
38 KD PHOSPHOPROTEIN
MAREK'S DISEASE HERPESVIRUS
255-270




(STRAIN GA)


PVP38_HSVMN
38 KD PHOSPHOPROTEIN
MAREK'S DISEASE HERPESVIRUS
255-270




(STRAIN MD11/75C/R2)


PVP39_NPVAC
MAJOR CAPSID PROTEIN
AUTOGRAPHA CALIFORNICA
296-311




NUCLEAR POLYHEDROSIS VIRUS


PVP39_NPVOP
MAJOR CAPSID PROTEIN
ORGYIA PSEUDOTSUGATA
107-134
214-240
295-316




MULTICAPSID POLYHEDROSIS




VIRUS


PVP3_ASHV4
VP3 CORE PROTEIN
AFRICAN HORSE SICKNESS VIRUS
65-85
126-147
215-230
845-862




(SEROTYPE 4/STRAIN VACCINE)


PVP3_BTV10
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
123-144
212-227




10/ISOLATE USA)


PVP3_BTV17
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
123-144
212-227




17/ISOLATTE USA)


PVP3_BTV14
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
123-144
212-227




1/ISOLATE AUSTRALIA)


PVP3_EHDV1
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC
121-142
671-695




DISEASE VIRUS (SEROTYPE 1)


PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC
121-142
671-695




DISEASE VIRUS (SEROTYPE




2/STRAIN AUS


PVP3_EDV
MAJOR 114 KD STRUCTURAL
RICE DWARF VIRUS (RDV)
89-108
340-360
367-393
690-717
742-768
748-768
960-975



PROTEIN


PVP3_ROTPC
INNER CORE PROTEIN
PORCINE ROTAVIRUS (GROUP C/
405-429



VP3
STRAIN COWDEN)


PVP3_ROTS1
INNER CORE PROTEIN
SIMIAN 11 ROTATVIRUS
401-425
426-444
512-536
796-822



VP3
(STRAIN SA11)


PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS
429-454




(STRAIN B95-8)


PVP40_HSV11
CAPSID PROTEIN P40
HERPES SIMPLEX VIRUS
141-168
472-492




(TYPE 1/STRAIN 17)


PVP40_HSVEB
CAPSID PROTEIN P40
EQUINE HERPESVIRUS TYPE 1
50-67
95-119
483-504




(STRAIN AB4P)


PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI
342-368




(STRAIN 11)


PVP40_ILTVT
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEI-
506-528




TIS VIRUS (STRAIN THRONE V882)


PVP40_MAMVM
MATRIX PROTEIN VP40
MARBURG VIRUS (STRAIN
95-110




MUSOKE)


PVP40_MABVP
MATRIX PROTEIN VP40
MARBURB VIRUS (STRAIN
95-110



VP40
POPP)


PVP40_NPVBM
STRUCTURAL
BOMBYX MORI NUCLEAR
223-242
256-272



GLYCOPROTEIN P40
POLYHEDROSIS VIRUS


PVP40_VZVD
CAPSID PROTEIN VP24
VARICELLA-ZOSTER VIRUS
47-64




(STRAIN DUMAS)


PVP41_NPVAC
STRUCTURAL
AUTOGRAPHA CALIFORNICA
229-248
262-278



GLYCOPROTEIN GP41
NUCLEAR POLYHEDROSIS VIRUS


PVP41_ROTS1
OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS
483-508



VP4
(STRAIN SA11)


PVP42_ROTS1
OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS
395-411
483-508



VP4
(STRAIN SA11)


PVP47_NPVAC
VIRAL TRANSCRIPTION
AUTOGRAPHA CALIFORNICA
14-38



REGULATOR P47
NUCLEAR POLYHEDROSIS VIRUS


PVP48_NPVOP
P48 PROTEIN
ORGYIA PSEUDOSUGATA
136-157




MULTICAPSID POLYHEDROSIS




VIRUS


PVP4A_VARV
MAJOR CORE PROTEIN
VARIOLA VIRUS
273-288



PRA PRECURSOR


PVP4B_VACCC
MAJOR CORE PROTEIN
VACCINIA VIRUS (STRAIN
331-358



PRA PRECURSOR
COPENHAGEN)


PVP4B_VACCV
MAJOR CORE PROTEIN
VACCINIA VIRUS (STRAIN WR)
331-358



PRA PRECURSOR


PVP4B_VARV
MAJOR CORE PROTEIN
VARIOLA VIRUS
331-358



PRA PRECURSOR


PVP4_BTV10
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
174-191
233-249
545-561




10/ISOLATE USA)


PVP4_BTV11
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
174-191
233-249
535-551




11/ISOLATE USA)


PVP4_BTV13
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
174-191
233-249
535-551




13/ISOLATE USA)


PVP4_BTV2A
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
174-193
233-249
535-551




2/ISOLATE USA)


PVP4_NCDV
OUTER CAPSID PROTEIN
NEBRASKA CALF DIARRHEA
483-508



VP4
VIRUS (STRAIN NCDV-LINCOLN)


PVP4_RDV
NONSTRUCTURAL PROTEIN
RICE DWARF VIRUS
386-407
493-514
626-645



PNS4


PVP4_ROTB4
OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (SEROTYPE
483-508



VP4
6/STRAIN B64)


PVP4_ROTBC
OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN
483-508



VP4
C486)


PVP4_ROTBU
OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
483-508



VP4


PVP4_ROTEH
OUTER CAPSID PROTEIN
EQUINE ROTAVIRUS (STRAIN
226-250
483-508



VP4
H-2)


PVP4_ROTH1
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE/
181-207
234-249
482-507



VP4
1/STRAIN 1076)


PVP4_ROTH5
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE/
181-207
234-249
482-507



VP4
2/STRAIN RV-5)


PVP4_ROTH6
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
483-508



VP4
1/STRAIN 69M)


PVP4_ROTHD
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
234-249
482-507



VP4
2/STRAIN DS1)


PVP4_ROTHJ
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (STRAIN K8)
483-508
524-548



VP4


PVP4_ROTHK
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (STRAIN KU)
76-91
181-207
234-249
482-507



VP4


PVP4_ROTHL
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (STRAIN L26)
181-207
234-249
482-507



VP4


PVP4_ROTHM
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
234-249
482-507



VP4
1/STRAIN M37)


PVP4_ROTHN
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE/
181-208
235-250
483-508



VP4
3/STRAIN MCN13)


PVP4_ROTHP
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
234-249
482-507



VP4
3/STRAIN P)


PVP4_ROTHT
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
234-249
482-507



VP4
4/STRAIN ST THOMAS)


PVP4_ROTHV
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
482-507



VP4
4/STRAIN VA70)


PVP4_ROTHW
OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
181-207
482-507



VP4
1/STRAIN WA)


PVP4_ROTP5
OUTER CAPSID PROTEIN
PORCINE ROTAVIRUS (SEROTYPE
235-250
483-508



VP4
5/STRAIN OSU)


PVP4_ROTPC
OUTER CAPSID PROTEIN
PORCINE ROTAVIRUS (GROUP
487-512



VP4
C/STRAIN COWDEN)


PVP4_ROTPG
OUTER CAPSID PROTEIN
PORCINE ROTAVIRUS (SEROTYPE
234-249
482-507



VP4
GOTTFRIED)


PVP4_ROTPY
OUTER CAPSID PROTEIN
PORCINE ROTAVIRUS
235-250
483-508



VP4
(SEROTYPE YM)


PVP4_ROTRH
OUTER CAPSID PROTEIN
RHESUS VIRUS
483-508



VP4


PVP4_ROTSF
OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN
483-508



VP4
SA11-FEM)


PVP4_ROTSS
OUTER CAPSID PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN
395-411
483-508



VP4
SA11-SEM)


PVP4_SBMV
P4 PROTEIN
SOUTHERN BEAN MOSAIC VIRUS
90-114


PVP4_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
192-215
416-438
498-519
564-591



PNS4


PVP5_BTV10
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317
326-345
494-517



VP5
10/ISOLATE USA)


PVP5_BTV11
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317
326-345
494-517



VP5
11/ISOLATE USA)


PVP5_BTV13
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317
494-517



VP5
13/ISOLATE USA)


PVP5_BTV1A
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
87-102
295-317



VP5
1/ISOLATE AUSTRALIA)


PVP5_BTV1S
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317



VP5
1/ISOLATE SOUTH AFRICA)


PVP5_BTV2A
OUTER CAPSID PROTEIN
BLUETONGUE VIRUS (SEROTYPE
295-317



VP5
2/ISOLATE USA)


PVP5_RDV
OUTER COAT PROTEIN P5
RICE DWARF VIRUS
265-284
622-639
690-715


PVP61_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
9-27
232-249
261-276




10/ISOLATE USA)


PVP61_NPVAC
61 KD PROTEIN
AUTOGRAPHA CALIFORNICA
321-337
438-462




NUCLEAR POLYHEDROSIS VIRUS


PVP62_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
5-23
257-372




10/ISOLATE USA)


PVP62_MRDV
PROB NONSTRUCTURAL
MAIZE ROUGH DWARF VIRUS
130-146



36 3 KD PROTEIN


PVP64_NPVOP
MAJOR ENV
ORGYIA PSEUDOTSUGATA
81-99
235-252
286-313



GLYCOPROTEIN PREC
MULTICAPSID POLYHEDROSIS




VIRUS


PVP67_NPVAC
MAJOR ENV
AUTOGRAPHA CALIFORNICA
84-102
238-255



GLYCOPROTEIN PREC
NULCEAR POLYHDEDROSIS VIRUS


PVP67_MPVGM
MAJOR ENVELOPE
GALLERIA MELLONELLA
155-172



GLYCOPROTEIN
NUCLEAR POLYHEDROSIS VIRUS


PVP6_BTV11
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
5-23
228-245
257-272



11/ISOLATE USA)


PVP6_BTV13
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
5-23
228-245
257-272




13/ISOLATE USA)


PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
5-23
228-245
257-272




17/ISOLATE USA)


PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
9-27
232-249
261-276




1/ISOLATE SOUTH AFRICA)


PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE
204-221
233-248




2/ISOLATE USA)


PVP6_WTV
STURCTURAL PROTEIN P6
WOUND TUMOR VIRUS
374-397


PVP6_WTVNJ
STURCTURAL PROTEIN P6
WOUND TUMOR VIRUS
374-397


PVP74_NPVAC
P74 PROTEIN
AUTOGRAPHA CALIFORNICA
254-275




NUCLEAR POLYHEDROSIS VIRUS


PVP75_HSVSA
PROBABLE MEMBRANE
HERPESVIRUS SAIMIRI
127-147



ANTIGEN 75
(STRAIN 11)


PVP79_NPVAC
79 KD PROTEIN
AUTOGRAPHA CALIFORNICA
274-301
405-420
678-704




NUCLEAR POLYHEDROSIS VIRUS


PVP7_BTV13
VP7 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE
197-222




13/ISOLATE USA)


PVP7_EHDV1
VP7 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC
205-222
301-323




DISEASE VIRUS (SEROTYPE 1)


PVP7_RDV
NONSTRUCTURAL PROTEIN
RICE DWARF VIRUS
400-416



PNS7


PVP7_WTV
NONSTRUCTURAL PROTEIN
WOUND TUMOR VIRUS
262-285



PNS7


PVS05_ROTH1
NONSTRUCTURAL PROTEIN
HUMAN ROTAVIRUS (STRAIN
140-157
428-450
457-473



NCVP2
IGV-80-3)


PVS05_ROTPC
NONSTRUCTURAL PROTEIN
PORCINE ROTAVIRUS (GROUP
88-112



NS53
C/STRAIN COWDEN)


PVS05_ROTS1
NONSTRUCTURAL PROTEIN
SIMINA 11 ROTAVIRUS
399-414



NCVP2
SA11)


PVS06_ROTBR
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN RF)
202-225


PVS06_ROTBS
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/
64-85




STRAIN SHINTOKU)


PVS06_ROTBU
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
202-225


PVS06_ROTEF
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN
202-225




F1-14)


PVS06_ROTE11
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN
202-225




H-2)


PVS06_ROTGA
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN
22-40




ADRV) (ADULT DIARRHEA




ROTAVIRUS)


PVS06_ROTG1
VP6 PROTEIN
ROTAVIRUS (GROUP B/
22-40




STRAIN IDIR)


PVS06_ROTH1
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
202-225




1/STRAIN 1076)


PVS06_ROTHC
VP6 PROTEIN
HUMAN ROTAVIRUS (GROUP C/
64-85




STRAIN BRISTOL)


PVS06_ROTHS
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
202-225




2/STRAIN S2)


PVS06_ROTHW
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE
202-225




1/STRAIN WA)


PVS06_ROTPC
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/
64-85
314-340




STRAIN COWDEN)


PVS06_ROTPG
VP6 PROTEIN
PORCINE ROTAVIRUS (STRAIN
202-225




GOTTFRIED)


PVS07_ROTBJ
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN
131-155




KN-4)


PVS08_RPTPC
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (GROUP C/
117-136




STRAIN COWDEN)


PVS08_ROTS1
NONSTRUCTURAL PROTEIN
SIMINA 11 ROTAVIRUS
274-295



NCVP4
(STRAIN SA11)


PVS09_ROTB6
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE
131-155




6/STRAIN 61A)


PVS09_ROTBA
GLYCOPROTEIN VP7
BOVINE ROATVIRUS (STRAIN
131-155




A44)


PVS09_ROTBK
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN
131-155




KK3)


PVS09_ROTBT
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE
131-155



1/STRAIN T449)


PVS09_ROTC7
GLYCOPROTEIN VP7
CHICKEN ROTAVIRIUS A
134-158




(SEROTYPE 7/STRAIN CH2)


VPS09_ROTEL
GLYCOPROTEIN VP7
EQUINE ROTATVIRUS (STRAIN
131-155




L338)


PVS09_ROTG1
GLYCOPROTEIN VP7
ROTAVIRUS (GROUP B/
205-232



PRECURSOR
IDIR)


PVS09_ROTH4
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155
197-212




4/STRAIN RV-4)


PVS09_ROTHA
GLYCOPROTEIN VP7 (
HUMAN ROTAVIRUS (SEROTYPE
197-212



2/STRAIN HU5)


PVS09_ROTHDa
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
197-212




2/STRAIN DS1)


PVS09_TOTH1
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
197-212




2/STRAIN HN126)


PVS09_ROTHL
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (STRAIN L26)
131-155
197-212


PVS09_ROTHM
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155
197-212




1/STRAIN M37)


PVS09_ROTHO
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155
197-212




1/STRAIN MO AND STRAIN D)


PVS09_ROTHP
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SERPTYPE
131-155




3/STRAIN P)


PVS09_ROTH4
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155



3/STRAIN RRV)


PVS09_ROTHV
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
197-212




4/STRAIN VA70)


PVS09_ROTHW
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE
131-155
197-212




1/STRAIN WA)


PVS09_ROTPS
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE
131-155
197-212




5/STRAIN OSU)


PVS09_ROTP6
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE
131-155




5/STRAIN TFR-41)


PVS09_ROTPB
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE
197-212




4/STRAIN BEN-144)


PVS09_ROTPM
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE
197-212




4/STRAIN BM1-1)


PVS09_ROTRH
GLYCOPROTEIN VP7
RHESUS ROTAVIRUS
131-155


PVS09_ROTS1
GLYCOPROTEIN VP7
SIMIAN 11 ROTAVIRUS
131-155




(STRAIN SA11)


PVS11_ROTGA
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN
136-153




ADRV) (ADULT DIARRHEA




ROTAVIRUS)


PVSH_HRSVA
SMALL HYDROPHOBIC
HUMAN RESPIRATORY
16-41



PROTEIN
SYNCYTIAL VIRUS (STRAIN A2)


PVSH_MUMP1
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN SBL-1),
7-29



PROTEIN
AND MUMPS VIRUS (STRAIN SBL)


PVSH_MUMP2
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
7-29



PROTEIN
EDINGBURGH 2 & 6)


PVSH_MUMP4
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
7-29



PROTEIN
EDINGBURGH 4)


PVSH_MUMPA
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
10-29



PROTEIN
MATSUYAMA)


PVSH_MUMPB
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN BELFAST)
7-29



PROTEIN


PVSH_MUMPE
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN ENDERS)
7-29



PROTEIN


PVSH_MUMPJ
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
7-29



PROTEIN
JERYL-LYNN)


PVSH_MUMPK
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN KILHAM)
7-29



PROTEIN


PVSH_MUMPL
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN BRISTOL L)
6-29



PROTEIN


PVSH_MUMPM
SMALL HYDROPHOBIC
MUMPS VIRUS (STRAIN
10-29



PROTEIN
MIYAHRARA VACCINE)


PY8_SOCMV
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE
10-27




VIRUS


PY97_ADE07
HYPOTHETICAL 9 7 KD
HUMAN ADENOVIRUS TYPE 7
54-77



EARLY PROTEIN


PY9K2_SSV1
HYPOTHETICAL 9 2 KD
SULFOLOBUS VIRUS-LIKE
16-41
62-77



PROTEIN
PARTICLE SSV1


PYAL1-EBV
HYPOTHETICAL BALF1
EPSTEIN-BARR VIRUS
205-220



PROTEIN
(STAIN B95-8)


SMALL HYDROPHOBIC



PROTEIN


PYB09_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRIS (ISOLATE
49-67



ORF9 PROTEIN
HP-438[MUNICH])


PYB10_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRIS (ISOLATE
84-100



ORF9 PROTEIN
HP-438[MUNICH])


PYB12_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRIS (ISOLATE
114-134
154-169



ORF9 PROTEIN
HP-438[MUNICH])


PYBL2-SFV3L
BEL-2 PROTEIN
SIMIAN FOAMY VIRUS
113-128




(TYPE 3/STRAIN LK3)


PYBL3_FOAMV
BEL-3 PROTEIN
HUMAN SPUMARETROVIRUS
52-78


PYDH1_HSVSC
HYP 28 7 KD PROTEIN
HERPESVIRUS SAIMIRIR
206-230



IN DHFR 3'REGION
(SUBGROUP C/STRAIN 488)


PYDH3_HSVSC
HYP 9 5 KD PROTEIN
HERPESVIRUS SAIMIRIR
69-90



IN DHFR 3'REGION
(SUBGROUP C/STRAIN 488)


PYEC4_EBV
HYPOTHETICAL EC-RF4
EPSTEIN-BARR VIRUS
200-222



PROTEIN
(STRAIN B95-8)


PYGA1_HSVMB
HYPOTHETICAL 23 6 KD
MAREK'S DISEADE
175-190



PROTEIN
HERPESVIRUS (STRAIN BC-1)


PYGA1_HSVMM
HYPOTHETICAL 23 6 KD
MAREK'S DISEADE
175-190



PROTEIN
HERPESVIRUS (STRAIN MD5)


PYHL4_HCMVA
HYPOTHETICLA PROTEIN
HUMAN CYTOMEGALOVIRUS
101-121



HHLF4
(STRAIN AD169)


PYHR3_VACCV
HYP HOST RANGE 27 4
VACCINIA VIRUS (STRAIN WR)
86-102



PROTEIN


PYIO2_CMVAS
HYP PROTEIN IN
MURINE CORONAVIRUS MHV
141-156



NUCLEOCAPSID ORF


PYIOR_CVM1
HYP PROTEIN IN
MURINE CORONAVIRUS MHV
141-156



NUCLEOCAPSID ORF


PYIOR_CVMS
HYP PROTEIN IN
MURINE CORONAVIRUS MHV
7-33



NUCLEOCAPSID ORF


PYKR2_EBV
HYPOTHETICAL BKRF2
EPSTEIN-BARR VIRUS
67-90



PROTEIN
(STRAIN B95-8)


PYL12_ADE41
HYPOTHETICAL 8 0 KD
HUMAN ADENOVIRUS TYPE 41
53-73



PROTEIN


PYOR1_TTV1
HYPOTHETICAL 7 9 KD
THERMOPROTEUS TENXA VIRUS
13-40



PROTEIN
1 (STRAIN KRA1)


PYOR2_COYMV
HYPOTHETICAL 15 KD
COMMELINA YELLOW MOTTLE
23-49



PROTEIN
VIRUS


PYOR2_EAV
HYPOTHETICAL 25 6 KD
EQUINE ARTERITIS VIRUS
165-192



PROTEIN


PYOR2_LELV
HYPOTHETICAL 28 4 KD
LELYSTAD VIRUS
196-212



PROTEIN


PYOR3_LVX
HYPOTHETICAL 11 8 KD
LILY VIRUX X
71-92



PROTEIN


PYOR3_NMV
HYPOTHETICAL 14 KD
NARCISSUS MOSAIC VIRUS
7-30



PROTEIN


PYOR3_PVX
HYPOTHETICAL 12 KD
POTATO VIRUS X
11-34



PROTEIN


PYOR3_PVXCP
HYPOTHETICAL 12 KD
POTATO VIRUS X (STRAIN CP)
11-34



PROTEIN


PYOR3_WCMVM
HYPOTHETICAL 13 KD
WHITE CLOVER MOSAIC VIRUS
9-29



PROTEIN
(STRAIN M)


PYOR3_WCMVO
HYPOTHETICAL 13 KD
WHITE CLOVER MOSAIC VIRUS
9-31



PROTEIN


PY0R5_ADEG1
HYPOTHETICAL 31 5 KD
AVIAN ADENOVIRUS GAL1
69-86



PROTEIN
(STRAIN PHELPS) (FOWL AND




ADEOVIRUS 1)


PYOR5_EAV
HYPOTHETICAL 28 7 KD
EQUINE ARTERITIS VIRUS
139-158



PROTEIN


PYORP_TTV1
HYPOTHETICAL 20 2 KD
THERMOPROTEUS TEXAX VIRUS
91-115



PROTEIN
(STRAIN KRA1)


PYR24_RTBV
HYPOTHETICAL P24
RICE TUNGRO BACILLIFORM
2-25
104-126



PROTEIN
VIRUS


PYP24_RTBVP
HYPOTHETICAL P24
RICE TUNGRO BACILLIFORM
2-25
104-126



PROTEIN
VIRUS (ISOLATE PHILIPPINES)


PYP47_NPVAC
HYPOTHETICAL 43 5 KD
AUTOGRAPHA CALIFORNICA
211-234



PROTEIN
NUCLEAR POLYHEDROSIS VIRUS


PYP62_NPVOP
HYPOTHETICAL 12 2 KD
ORGYIA PSEUDOSUGATA
82-108



PROTEIN
MULTICAPSID POLYHEDROSIS




VIRUS


PYP63_NPVOP
HYPOTHETICAL 12 2 KD
ORGYIA PSEUDOSUGATA
27-54
215-230



PROTEIN
MULTICAPSID POLYHEDROSIS




VIRUS


PYP7B_TNVD
HYPOTHETICAL P7B
TOBACCO NECROSIS VIRUS
13-31



PROTEIN
(STRAIN D) (TNV)


PYPO4_NPVLD
HYPOTHETICAL 8 5 KD
LYMANTRIA DISPAR MULTI-
16-35



PROTEIN
CAPSID NUCLEAR POLYHEDROSIS




VIRUS


PYRF1_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
42-66



RF1
(TYPE 6/STRAIN GS)


PYRF2_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
55-74



RF2
(TYPE 6/STRAIN GS)


PYRF3_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
32-56



RF3
(TYPE 6/STRAIN GS)


PYRP1_IRV6
REPETITIVE PROTEIN
CHILD IRIDESCENT VIRUS (CIV)
20-43



ORF1
(INSECT IRIDESCENT VIURS




TYPE 6)


PYR41_IRV6
REPETITIVE PROTEIN
CHILD IRIDESCENT VIRUS (CIV)
44-69



ORF4
(INSECT IRIDESCENT VIURS




TYPE 6)


PYRP6_IRV6
REPETITIVE PROTEIN
CHILD IRIDESCENT VIRUS (CIV)
98-123
179-204
260-285



ORF6
(INSECT IRIDESCENT VIURS




TYPE 6)


PYRR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
199-223



PROTEIIN
(STRAIN B95-8)


PYRR2_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
164-182



PROTEIIN
(STRAIN B95-8)


PYsR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
92-113



PROTEIIN
(STRAIN B95-8)


PYtR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
383-401



PROTEIIN
(STRAIN B95-8)


PYUB2_NPVOP
HYPOTHETICAL 24 0 KD
ORGYIA PSEUDOTSUGATA
133-152



PROTEIN
MULTICAPSID POLYHEDROSIS




VIRUS (OP


PYVA3_VACCC
HYPOTHETICAL 8 4 KD
VACCINIA VIRUS (STRAIN
82-99
140-156



PROTEIN
COPENHAGEN)


PYVAF_VACCC
HYPOTHETICAL 8 4 KD
VACCINIA VIRUS (STRAIN
17-40
51-68



PROTEIN
COPENHAGEN)


PYVAL_VACCV
HYPOTHERTICAL 9 9 KD
VACCINIA VIRUS (STRAIN WR),
21-43



PROTEIN
AND VACCINIA VIRUS (STRAIN




COPE


PYVBG_VACCC
HYPOTHETICAL 11 2 KD
VACCINIA VIRUS (STRAIN
37-54



PROTEIN
COPENHAGEN)


PYVCA_VACCC
HYPOTHETICAL 8 0 KD
VACCINIA VIRUS (STRAIN
18-35




COPENHAGEN)


PYVD2_VACCV
HYPOTHETICAL 8 6 KD
VACCINIA VIRUS (STRAIN WR),
5-26
36-52



PROTEIN
AND VACCINIA VIRUS (STRAIN




COPE)


PYVDA_VACCC
HYPOTHETICAL 9 2 KD
VACCINIA VIRUS (STRAIN
22-38
44-64



PROTEIN
COPENHAGEN)


PYVDA_VACCV
HYPOTHETICAL 9 2 KD
VACCINIA VIRUS (STRAIN WR)
3-18
22-38
44-64



PROTEIN


PYVFA_VACCC
HYPOTHETICLA 7 1 KD
VACCINIA VIRUS (STRAIN
48-67



PROTEIN
COPENHAGEN)


PVYFF_VACCC
HYPOTHETICAL 8 8 KD
VACCINIA VIRUS (STRAIN
23-42



PROTEIN
COPENHAGEN)


PYVGA_VACCC
HYPOTHETICAL 14 3 KD
VACCINIA VIRUS (STRAIN
105-127



PROTEIN
COPENHAGEN)


PYVKB_VACCC
HYPOTHETICAL 9 0 KD
VACCINIA VIRUS (STRAIN
54-70



PROTEIN
COPENHAGEN)


PYZL2_EBV
HYPOTHETICAL BZLF2
EPSTEIN-BARR VIRUS
150-166



PROTEIN
(STRAIN B95-8)


PY14K_CMSV
HYPOTHETICAL 14 5 KD
CHLORISIS STRIATE MOSAIC
54//80



PROTEIN
VIRUS


PY18K_SSV1
HYPOTHETICAL 18 0 KD
SULFOLOBUS VIRUS-LIKE
100-125
141-162



PROTEIN
PARTICLE SSV1


PY206_ADE07
HYPOTHETICAL 20 6 KD
HUMAN ADENOVIRUS TYPE 7
50-73



EARLY PROTEIN


PY25K_BNYVF
RNA-3 HYPOTHETICAL 24 7
BEET NECROTIC YELLOW VEIN
163-188



KD PROTEIN
MOSAIC VIRUS (ISOLATE F2)


PY29K_NPVAC
HYPOTHETICAL 29 9 KD
AUTOGRAPHA CALIFORNICA
90-106



PROTEIN
NECROSIS POLYHEDROSIS VIRUS


PY2_SCOMV
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE
65-90




VIRUS


PY32K_SSV1
HYPOTHETICAL 31 7 KD
SULFOLOBUS VIRUS-LIKE
122-142



PROTEIN
PARTICLE SSV1


PY6K0_SSV1
PY32K_SSV1
HYPOTHETICAL 6 0 KD
SULFOLOBUS VIRUS-LIKE
23-44



PROTEIN
PARTICLE SSV1


PY7K4_VACCV
HYPOTHETICAL 7 K KD
VACCINIA VIRUS (STRAIN WR)
21-36



PROTEIN


PY7K_MEASH
HYPOTHETICAL 7 KD
MEASLES VIRUS (STRAIN HALLE)
3-25



PROTEIN


PY7_SOCMV
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE
96-120




VIRUS


PY85K_SSV1
HYPOTHETICAL 85 7 KD
SULFOLOBUS VIRUS-LIKE
80-105
155-173
543-565
657-675
764-784



PROTEIN
PARTICLE SSV1


PY8_SOCMV
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE
10-27




VIRUS


PY97_ADE07
HYPOTHETICAL 9 7 KD
HUMAN ADENOVIRUS TYPE 7
54-77



EARLY PROTEIN


PY9K2_SSV1
HYPOTHETICAL 9 2 KD
SULFOLOBUS VIRUS-LIKE
16-41
62-77



PROTEIN
PARTICLE SSV1


PYAL1_EBV
HYPOTHETICAL BALF1
EPSTEIN-BARR VIRUS
205-220



PROTEIN
(STRAIN B95-8)


PYB01_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
354-374



ORF1 PROTEIN
HP-438[MUNICH])


PYB07_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
104-121



ORF7 PROTEIN
HP-438[MUNICH])


PYB09_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
49-67



ORF9 PROTEIN
HP-438[MUNICH])


PYB010_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
84-100



ORF10 PROTEIN
HP-438[MUNICH])


PYB012_FOWPM
HYPOTHETICAL BAMHI-
FOWLPOX VIRUS (ISOLATE
114-134
154-169



ORF12 PROTEIN
HP-438[MUNICH])


PYBL2_SFV3L
BEL-2 PROTEIN
SIMIAN FOAMY VIRUS
113-128




(TYPE 3/STRAIN LK3)


PYBL3_FOAMV
BEL-3 PROTEIN
HUMAN SPUMARETOVIRUS
52-78


PYDH1_HSVSC
HYPOTHETICAL 28 7 KD
HERPESVIRUS SAIMIRI
206-230



PROTEIN IN DHFR
(SUBGROUP C/STRAIN 488)



3'REGION


PYDH3_HSVSC
HYPOTHETICAL 9 5 KD
HERPESVIRUS SAIMIRI
69-90



PROTEIN IN DHFR
(SUBGROUP C/STRAIN 488)



3'REGION


PYEC4_EBV
HYPOTHETICAL EC-RF4
EPSTEIN-BARR VIRUS
200-222



PROTEIN
(STRAIN B95-8)


PYGA1_HSVMB
HYPOTHETICAL 23 6 KD
MAREK'S DISEASE
175-190



PROTEIN
HERPESVIRUS (STRAIN BC-1)


PYGA1_HSVMB
HYPOTHETICAL 23 6 KD
MAREK'S DISEASE
175-190



PROTEIN
HERPESVIRUS (STRAIN MID-1)


PYHL4-HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS
101-121



HHLF4
(STRAIN AD169)


PYHR3_VACCV
HYPOTHETICAL HOST
VACCINAI VIRUS (STRAIN WR)
86-102



RANGE 27 4 KD PROTEIN


PYIO2_CVMA5
HYPOTHETICAL PROTEIN IN
MURINE CORONAVIRUS MHV
141-156



NUCLEOCAPSID ORF


PYIOR_CVMA5
HYPOTHETICAL PROTEIN IN
MURINE CORONAVIRUS MHV
141-156



NUCLEOCAPSID ORF


PYIOR_CVMA5
HYPOTHETICAL PROTEIN IN
MURINE CORONAVIRUS MHV
7-33



NUCLEOCAPSID ORF


PYKR2_EBV
HYPOTHETICAL BKRF2
EPSTEIN-BARR VIRUS
67-90



PROTEIN
(STRAIN B95-8)


PYUL12_ADE41
HYPOTHETICAL 8 0 KD
HUMAN ADENOVIRUS TYPE 41
53-73



PROTEIN


PYMR2_EBV
BMRF2 PROTEIN
EPSTEIN-BARR VIRUS
76-100
128-155
215-241
330-350




(STRAIN B95-8)


PYMSP_IRV22
HYPOTHETICAL 15 9 KD
SIMULIUM IRIDESCENT VIRUS
23-46



PROTEIN
(INSECT IRIDESCENT VIRUS




TYPE 22)


PYOR1_ADEG1
HYPOTHETICAL PROTEIN
AVIAN ADENOVIRUS GAL1
59-80




(STRAIN PHELPS) (FOWL




ADENOVIRUS 1)


PYOR1_COYMV
HYPOTHETICAL 23 KD
COMMELINA YELLOW MOTTLE
56-83



PROTEIN
VIRUS


PYOR1_TTV1
HYPOTHETICAL 7 9 KD
THERMOPROTEUS TENAX VIRUS
13-40



PROTEIN
1 (STRAIN KRA1)


PYOR2_COYMV
HYPOTHETICAL 15 KD
COMMELINA YELLOW MOTTLE
23-49



PROTEIN
VIRUS


PYOR2_EAV
HYPOTHETICAL 25 6 KD
EQUINE ARTERITIS VIRUS
165-192



PROTEIN


PYOR2_LELV
HYPOTHETICAL 28 4 KD
LELYSTAD VIRUS
196-212



PROTEIN


PYOR3_LVX
HYPOTHETICAL 11 8 KD
LILY VIRUS
71-92



PROTEIN


PYOR3_NMV
HYPOTHETICAL 14 KD
NARCISSUS MOSAIC VIRUS
7-30



PROTEIN


PYOR3_PVX
HYPOTHETICAL 12 KD
POTATO VIRUX X
11-34



PROTEIN


PYOR3_PVXCP
HYPOTHETICAL 12 KD
POTATO VIRUS X (STRAIN CP)
11-34



PROTEIN


PYOR3_WCMVM
HYPOTHETICAL 13 KD
WHITE CLOVER MOSAIC
9-29



PROTEIN
VIRUS


PYOR3_WCMVO
HYPOTHETICAL 13 KD
WHITE CLOVER MOSAIC
9-31



PROTEIN
VIRUS


PYOR5_ADEG1
HYPOTHETICAL 31 5 KD
AVIAN ADENOVIRUS GAL1
69-86



PROTEIN
(STRAIN PHELPS) (FOWL




ADENOVIRUS 1)


PYOR5_EAV
HYPOTHETICAL 28 7 KD
EQUINE ARTERITISA VIRUS
139-158



PROTEIN


PYOR6_NMV
HYPOTHETICAL 10 KD
NARCISSUS MOSAIC VIRUS
10-26



PROTEIN


PYOR1_TTV1
HYPOTHETICAL 16 6 KD
THERMOPROTEUS TENAX VIRUS
13-32



PROTEIN
1 (STRAIN KRA1)


PYOR1_TTV1
HYPOTHETICAL 16 6 KD
THERMOPROTEUS TENAX VIRUS
16-39



PROTEIN
1 (STRAIN KRA1)


PYORM_TTV1
HYPOTHETICAL 38 6 KD
THERMOPROTEUS TENAX VIRUS
82-102
233-256



PROTEIN
1 (STRAIN KRA1)


PYORP_TTV1
HYPOTHETICAL 20 2 KD
THERMOPROTEUS TENAX VIRUS
91-115



PROTEIN
1 (STRAIN KRA1)


PYP24_RTBV
HYPOTHETICAL P24
RICE TUNGRO BASCILLIFORM
2-25
104-126



PROTEIN
VIRUS


PYP24_RTBVP
HYPOTHETICAL P24
RICE TUNGRO BASCILLIFORM
2-25
104-126



PROTEIN
VIRUS (ISOLATE PHILIPPINES)


PYP47_NPVAC
HYPOTHETICAL 43 5 KD
AUTOGRAPHA CALIFORNICA
211-234



PROTEIN IN P47
NUCLEAR POLYHEDROSIS VIRUS



3'REGION


PYP62_NPVOP
HYPOTHETICAL 43 5 KD
ORGYIA PSEUDOTSUGATA
82-108



PROTEIN IN P47
MULTICAPSID POLYHEDROSIS



3'REGION
VIRUS (OP


PYP63_NPVOP
HYPOTHETICAL 43 5 KD
ORGYIA PSEUDOTSUGATA
27-54
215-230



PROTEIN IN P47
MULTICAPSID POLYHEDROSIS



3'REGION
VIRUS (OP


PYP7B_TNVD
HYPOTHETICAL P7B
TOBACCO NECROSIS VIRUS
13-31



PROTEIN
(STRAIN D) (TNV)


PYPO4_HPVLD
HYPOTHETICAL 8 5 KD
LYMANTRIA DISPAR MULTI-
16-35



PROTEIN IN POL
CAPSID NUCLEAR POLYHEDROSIS



3'REGION
VIRUS


PYRF1_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
42-66



RF1
(TYPE 6/STRAIN GS)


PYRF2_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
55-74



RF2
(TYPE 6/STRAIN GS)


PYRF3_HSV6G
HYPOTHETICAL PROTEIN
HERPES SIMPLEX VIRUS
32-56



RF3
(TYPE 6/STRAIN GS)


PYRP1_IRV6
REPETITIVE PROTEIN
CHILO IRIDESCENT VIRUS
20-43



ORF1
(CIV) (INSECT IRIDESCENT




VIRUS TYPE 6)


PYRP4_IRV6
REPETITIVE PROTEIN
CHILO IRIDESCENT VIRUS
44-69



ORF4
(CIV) (INSECT IRIDESCENT




VIRUS TYPE 6)


PYRP5_IRV6
REPETITIVE PROTEIN
CHILO IRIDESCENT VIRUS
98-123
179-204
260-285



ORF5
(CIV) (INSECT IRIDESCENT




VIRUS TYPE 6)


PYRR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
199-223



PROTEIN
(STRAIN B95-8)


PYRR2_EBV
HYPOTHETICAL BRRF2
EPSTEIN-BARR VIRUS
164-182



PROTEIN
(STRAIN B95-8)


PYRR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
92-113



PROTEIN
(STRAIN B95-8)


PYRR1_EBV
HYPOTHETICAL BRRF1
EPSTEIN-BARR VIRUS
383-401



PROTEIN
(STRAIN B95-8)


PYUB2_NPVOP
HYPOTHETICAL 24 0 KD
ORGYIA PSEUDOTSUGATA
133-152



PROTEIN
MULTICAPSID POLYHEDROSIS




VIRUS


PYVAE_VACCC
HHYPOTHETICAL 18 2 KD
VACCINIA VIRUS (STRAIN
82-99
140-156



PROTEIN
COPENHAGEN)


PYVAF_VACCC
HHYPOTHETICAL 8 4 KD
VACCINIA VIRUS (STRAIN
17-40
51-68



PROTEIN
COPENHAGEN)


PYVAL_VACCV
HYPOTHETICAL 9 9 KD
VACCINIA VIRUS (STRAIN WR),
21-43



PROTEIN
AND VACCINIA VIRUS (STRAIN




COPE


PYVAT_VACCV
HYPOTHETICAL 8 9 KD
VACCINIA VIRUS (STRAIN WR),
28-46



PROTEIN
AND VACCINIA VIRUS (STRAIN




COPE


PYVBE_VACCV
HYPOTHETICAL 10 5 KD
VACCINIA VIRUS (STRAIN WR),
9-28



PROTEIN
AND VACCINIA VIRUS (STRAIN




COPE


PYVBG_VACCC
HYPOTHETICAL 11 2 KD
VACCINIA VIRUS (STRAIN
37-54



PROTEIN
COPENHAGEN)


PYVCA_VACCC
HYPOTHETICAL 11 2 KD
VACCINIA VIRUS (STRAIN
18-35



PROTEIN
COPENHAGEN)


PYVD2_VACCV
HYPOTHETICAL 8 6 KD
VACCINIA VIRUS (STRAIN WR),
5-26
36-52



PROTEIN
AND VACCINIA VIRUS (STRAIN




COPE


PYVDA_VACCC
HYPOTHETICAL 9 2 KD
VACCINIA VIRUS (STRAIN
22-38
44-64



PROTEIN
COPENHAGEN)


PYVDA_VACCV
HYPOTHETICAL 9 2 KD
VACCINIA VIRUS (STRAIN WR)
3-18
22-398
44-64



PROTEIN


PYVFA_VACCC
HYPOTHETICAL 7 1 KD
VACCINIA VIRUS (STRAIN
48-67



PROTEIN
COPENHAGEN)


PYVFF_VACCC
HYPOTHETICAL 8 8 KD
VACCINIA VIRUS (STRAIN
23-42



PROTEIN
COPENHAGEN)


PYVGA_VACCC
HYPOTHETICAL 14 3 KD
VACCINIA VIRUS (STRAIN
105-127



PROTEIN
COPENHAGEN)


PYVKB_VACCC
HYPOTHETICAL 9 0 KD
VACCINIA VIRUS (STRAIN
54-70



PROTEIN
COPENHAGEN)


PYZL2_EBV
HYPOTHETICAL BZLF2
EPSTEIN-BARR VIRUS
150-166



PROTEIN
(STRAIN B95-8)
















TABLE XIV







SEARCH RESULTS SUMMARY


FOR P23TLZIPC MOTIF
















PCGENE
P23CTLZIP
All Viruses (no bacteriophages)









FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7





PPOL2_TBRVS
RNA2 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
617-651
1041-1077









(TBRV)


PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS (ISOLATE
316-347




RASPBERRY) (TOMRSV)


PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27)
1833-1866
2001-2037




(BEV)


PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
102-135
1650-1678
3220-3248




(ISOLATE NADL)


PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS
102-135
1560-1588
3130-3158




(STRAIN SD-1)


PPOLG_BYMV
GENOME POLYPROTEIN
BEAN YELLOW MOSAIC VIRUS
226-255


PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21 (STRAIN COE)
1120-1157


PPOLG_COXA3
GENOME POLYPROTEIN
COXSACKIEVIRUS A23 (ECHO 9 VIRUS)
67-99




(EC-9-V)


PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9 (STRAIN GRIGGS)
1601-1633


PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
1582-1614


PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIEVIRUS B3
1585-1617


PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
1583-1615


PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
835-868
1585-1617


PPOLG_DENIS
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN
1111-1145
1485-1519
2401-2434




SINGAPORE S275/90)


PPOLG_DENIW
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN WESTERN
1112-1146




PACIFIC)


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
61-95
1112-1146


PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
61-95
1112-1146




16681-PDK53)


PPOLG_DEN2D
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN D2-04)
61-95


PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMAICA)
61-95
1112-1146


PPOLG_DEN2N
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN
364-398




NEW GUINEA C)


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR 159/S1)
61-95
1112-1146


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974
832-866


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
61-95
2399-2432


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
60-94


PPOLG_ECHG
GENOME POLYPROTEIN
ECHOVIRUS II (STRAIN GREGORY)
774-806


PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
1194-1226
1463-1501


PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN
1196-1228
1465-1503




EMC-B NONDIABETOGENIC)


PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN
1196-1228
1465-1503




EMC-D DIABETOGENIC)


PPOLG_FMDVI
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN
1036-1064
1098-1133
1167-1199
1465-1501




A10-61) (APHTHOVIRUS A)


PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN
1036-1074
1098-1133
1167-1199
1465-1501




A12) (APHTHOVIRUS A)


PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAINS
1098-1133
1167-1199
1465-1501




OIK AND OIBFS)


PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1) (HCV)
1640-1670


PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT)
1363-1393
1560-1588
3131-3159




(SWINE FEVER VIRUS)


PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN
102-135
1560-1588
3131-3159




BRESCIA) (SWINE FEVER VIRUS)


PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK) (HCV)
1640-1670


PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H) (HCV)
1640-1670


PPOLG_HCVH4
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-476)
254-291




(HCV)


PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6) (HCV)
711-742


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8) (HCV)
711-742
1893-1924


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
1640-1670




(HCV)


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
1640-1670




HC-JT) (HCV)


PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE
1640-1670




TAIWAN) (HCV


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
1514-1550
2068-2099


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
1514-1550
2068-2099


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
1514-1550
2068-2099


PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
1515-1551
2069-2100


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
1515-1551
2069-2100


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
1515-1551
2069-2100


PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN
831-868
1517-1553




AGM-27)


PPOLG_HRV14
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14 (HRV-14)
1094-1132
2005-2041


PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B
1453-1485
1816-1849
1983-2019




(HRV-1B)


PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2 (HRV-2)
1446-1475
1809-1842
1976-2012


PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89 (HRV-89)
1460-1492
1823-1856
1990-2026


PPOLG_HUEV7
GENOME POLYPROTEIN
HUMAN ENTEROVIRUS 70 (STRAIN J670/71
1108-1145


PPOLG_IBDVO
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
222-260




(STRAIN OH)


PPOLG_JAEV1
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
61-95
1233-1269
1516-1549
2779-2813
3274-3311




(STRAIN SA-14)


PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
61-95
1233-1269
1516-1549
2779-2813
3274-3311




(STRAIN SA(V))


PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
61-95
1233-1269
1516-1549
2779-2813
3274-3311




(STRAIN JAOARS982)


PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS
1161-1197




(STRAIN NAKAYAMA)


PPOLG_KUNJM
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
61-95
561-594
3275-3312


PPOLG_LANVT
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
1157-1188
1519-1551
2230-2264
2366-2398
3095-3132


PPOLG_MCFA
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT (CFA
1174-1206
1330-1359




FLAVIVIRUS)


PPOLG_MDMV
GENOME POLYPROTEIN
MAIZE DWARF MOSAIC VIRUS (MDMV)
322-351


PPOLG_MVEV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
61-95
1305-1342


PPOLG_OMV
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
344-376


PPOLG_PEMVC
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS (CALIFORNIA
826-859
1086-1124




ISOLATE) (PEMV)


PPOLG_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1121-1158


PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
1122-1159


PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
1120-1157


PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
1120-1157


PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAIN 23127)
1119-1156


PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAINS
1119-1156




P3/LEON/37 AND P3/LEON 12A[1]B)


PPOLG_PPVD
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D) (PPV)
2960-2991
3084-3113


PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN EL AMAR)
1337-1368
1461-1490




(PPV)


PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT) (PPV)
2944-2975
3068-3097


PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC)
2959-2990
3083-3112




(PPV)


PPOLG_PSBMV
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS
931-966
1411-1445
3149-3178




(STRAIN DPDI)


PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN)
1302-1336
3004-3033




(PVY)


PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N) (PVY)
1302-1336


PPOLG_PYFVI
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE
230-262
1110-1139
1903-1931




P-121) (PYFV)


PPOLG_SBMVN
GENOME POLYPROTEIN
SOYBEAN MOSAIC VIRUS (STRAIN N)
245-274


PPOLG_STEVM
GENOME POLYPROTEIN
ST LOUIS ENCEPHALITIS VIRUS
61-95
1301-1331




(STRAIN M51-7)


PPOLG_SUMVS
GENOME POLYPROTEIN
SUGARCANE MOSAIC VIRUS (STRAIN SC)
307-336


PPOLG_SVDVH
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
1585-1617




(STRAIN H/3′ 76)


PPOLG_SVDVU
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS
1585-1617




(STRAIN UKG/27/72)


PPOLG_TBEVS
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
835-869
1157-1188
2366-2398
3093-3130




(STRAIN SOFJIN) (TBEV)


PPOLG_TBEVW
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS
1157-1188
2366-2398
3095-3132




(WESTERN SUBTYPE) (THEV)


PPOLG_TEV
GENOME POLYPROTEIN
TOBACCO ETCH VIRUS (TEV)
827-865
2998-3027


PPOLG_TMEVB
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1074-1102
1193-1221
1470-1508
1908-1939




VIRUS (STRAIN BEAN 8386)


PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1072-1100
1191-1219
1468-1506
1906-1937




VIRUS (STRAIN DA)


PPOLG_TMEVG
GENMOE POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS
1074-1102
1193-1221
1470-1508
1908-1939




VIRUS (STRAIN GDVH)


PPOLG_TUMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS (TUMV)
1573-1602


PPOLG_TVMV
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS (TVMV)
2698-2733


PPOLG_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
958-987


PPOLG_WNV
GENOME POLYPROTEIN
WEST NILE VIRUS
61-95
557-590
3272-3309


PPOLG_YEFV1
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
1157-1186
1228-1266
1495-1531
2308-2340
3092-3127


PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN
1157-1186
1228-1266
1495-1531
2308-2340
3092-3127




PASTEUR 17D-204)


PPOLG_ZYMV
GENOME POLYPROTEIN
ZUCCHINI YELLOW MOSAIC VIRUS (ZYMV)
329-358


PPOLH_POLIM
GENOME POLYPROTEIN
POLIOVIRUS TYPE I (STRAIN MAHONEY)
1122-1159


PPOLH_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
244-273


PPOLN_EEVVT
NONSTRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS
613-648
1436-1468




VIRUS (STRAIN TRINIDAD DONKEY)


PPOLN_FCVC6
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN CFI/68 FIV)
327-365




(FCV)


PPOLN_FCVF4
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN JAPANESE F4)
300-333




(FCV)


PPOLN_FCVF9
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN F9) (FCV)
803-841


PPOLN_HEVBU
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN BURMA) (HEV)
1618-1652


PPOLN_HEVME
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MEXICO) (HEV)
1616-1650


PPOLN_HEVMY
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MYANMAR)
1618-1652




(HEV)


PPOLN_HEVPA
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN PAKISTAN)
1617-1651




(HEV)


PPOLN_MIDDV
NONSTRUCTURAL POLYPROTEIN
MIDDELBURG VIRUS
25-57


PPOLN_ONRVG
NONSTRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
1144-1180
1404-1439




(ONN)


PPOLN_RHDV
NON-STRUCTURAL POLYPROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
299-337
1562-1594




(RHDV


PPOLN_SFV
NONSTRUCTURAL POLYPROTEIN
SEMLIKIFOREST VIRUS
1146-1175
1406-1441


PPOLN_SINDO
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/
1454-1486




STRAIN EDSBYN 82-5)


PPOLN_SINDV
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAIN HRSP)
1454-1486


PPOLS_EEEV
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
524-556


PPOLS_EEEV3
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
525-557




(STRAIN VA33[TEN BROECK])


PPOLS_EEVV8
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1203-1239




(STRAIN TC-83)


PPOLS_EEVVT
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
1203-1239




(STRAIN TRINIDAD DONKEY)


PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
1150-1182
1201-1235




(ONN)


PPOLS_RRVN
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092) (RRV)
1216-1250


PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48) (RRV)
1216-1250


PPOLS_SFV
STRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
1215-1251


PPOLS_SINDO
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/
1197-1233




STRAIN EDSBYN 82-5)


PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
1197-1233


PPOLS_WEEV
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
1188-1224


PPOL_BIV06
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
742-773
\




(ISOLATE 106) (BIV)


PPOL_BIV27
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
742-773




(ISOLATE 127) (BIV)


PPOL_BLVAU
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN
343-374




ISOLATE) (BLV)


PPOL_CAEVC
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
206-240
322-355




(STRAIN CORK) (CAEV)


PPOL_COYMV
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS
1234-1267
1484-1518
1750-1788
1800-1831




(COYMV)


PPOL_EIAV9
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
166-198
506-539




(CLONE 1369) (EIAV)


PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
166-198
506-539




(CLONE CL22) (EIAV)


PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
166-198
505-538




(ISOLATE WYOMING) (EIAV)


PPOL_FOAMV
POL POLYPROTEIN
HUMAN SPUMARETROVIRUS (FOAMY
126-154




VIRUS)


PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
348-378


PPOL_HTLIA
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
657-688




(STRAIN ATK) (HTLV-1)


PPOL_HTLIC
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
657-688




(CARIBBEAN ISOLATE) (HTLV-1)


PPOL_HVIA2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-364
500-537




(ARV2/SF2 ISOLATE) (HIV-1)


PPOL_HVIB1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-376
512-549




(BH10 ISOLATE) (HIV-1)


PPOL_HVIB5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-376
512-549




(BH5 ISOLATE) (HIV-1)


PPOL_HVIBR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-376
512-549




(BRU ISOLATE) (HIV-1)


PPOL_HVIEL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536




(ELI ISOLATE) (HIV-1)


PPOL_HVIH2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-364
500-537




(HXB2 ISOLATE) (HIV-1)


PPOL_HVIJR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
335-368
504-541




(JRCSF ISOLATE) (HIV-1)


PPOL_HVIMA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363




(MAL ISOLATE) (HIV-1)


PPOL_HVIMN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-367
503-540




(MN ISOLATE) (HIV-1)


PPOL_HVIN5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-364
500-537




(NEW YORK-5 ISOLATE) (HIV-1)


PPOL_HVIND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536




(NDK ISOLATE) (HIV-1)


PPOL_HVIOY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
331-364
500-537




(OYI ISOLATE) (HIV-1)


PPOL_HVIPV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
343-376
512-549




(PV22 ISOLATE) (HIV-1)


PPOL_HVIRH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536




(RF/HAT ISOLATE) (HIV-1)


PPOL_HVIU4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536




(STRAIN UGANDAN/ISOLATE


PPOL_HVIZ2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
330-363
499-536




(Z2/CDC-Z34 ISOLATE) (HIV-1)


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
353-386




(ISOLATE CAM2) (HIV-2)


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
353-386




(ISOLATE NIH-Z) (HIV-2)


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
354-387




(ISOLATE ROD) (HIV-2)


PPOL_IPHA
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
460-496




(IAP-H18


PPOL_JSRV
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
186-220


PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS (MPMV)
650-681


PPOL_OMVVS
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
61-98
102-130
182-216
298-331


PPOL_RTBV
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
788-824
891-919
1399-1433


PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
788-824
891-919
1399-1433




(ISOLATE PHILIPPINES) (RTBV)


PPOL_SFV3L
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
337-365




(SFV-3)


PPOL_SIVCE
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
355-388
524-561




(SIV(CPZ)) (CIV)


PPOL_SOCMV
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
17-55
58-89


PPOL_SRV1
POL POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
650-681


PPOL_VILV
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
 80-117
201-235
317-350


PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS
 80-117
317-350




(STRAIN 1514/CLONE LV1-1KS1)


PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS
 80-117
201-235
317-350




(STRAIN 1514/CLONE LV1-1KS2)


PPP41_HSV6G
PHOSPHOPROTEIN P41
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
60-91


PPTP_NPVAC
PROTEIN-TYROSINE PHOSPHATASE
AUTOGRAPHA CALIFORNICA NUCLEAR
53-85




POLYHEDROSIS VIRUS


PREEP_CSV
REPEAT ELEMENT PROTEIN
CAMPOLETIS SONORENSIS VIRUS (CSV)
113-149


PREV_BIV27
REV PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
 74-109




(ISOLATE 127) (BIV)


PREV_EIAV9
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
44-79




(CLONE 1369) (EIAV)


PREV_EIAVC
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
44-79




(CLONE CL22) (EIAV)


PREV_EIAVY
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS
 74-109




(ISOLATE WYOMING) (EIAV)


PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
25-62




(TYO-1 ISOLATE) (SIV-AGM)


PRIRI_ASFM2
RIBONUCLEOSIDE-DIPHOSPHATE
AFRICAN SWINE FEVER VIRUS
630-666



REDUCTASE LARGE CH
(ISOLATE MALAWI LIL 20/1) (ASFV)


PRIRI_HCMVA
RIBONUCLEOSIDE-DIPHOSPHATE
HUMAN CYTOMEGALOVIRUS
279-311
393-430
449-477



REDUCTASE LARGE CH
(STRAIN AD169)


PRIRI_HSVEB
RIBONUCLEOSIDE-DIPHOSPHATE
EQUINE HERPESVIRUS TYPE 1
60-92
503-531



REDUCTASE LARGE CH
(STRAIN AB4P) (EHV-1)


PRIRI_VACCC
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN COPENHAGEN)
203-235



REDUCTASE LARGE CH


PRIRI_VACCV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN WR)
203-235



REDUCTASE LARGE CH


PRIRI_VARV
RIBONUCLEOSIDE-DIPHOSPHATE
VARIOLA VIRUS
203-235



REDUCTASE LARGE CH


PRIRI_VZVD
RIBONUCLEOSIDE-DIPHOSPHATE
VARICELLA-ZOSTER VIRUS
34-72
221-254
488-516



REDUCTASE LARGE CH
(STRAIN DUMAS) (VZV)


PRMIL_AVEVR
RMIL SERINE/THREONINE-PROTEIN KINASE
AVIAN ROUS-ASSOCIATED VIRUS TYPE 1
149-177



TRANSFORM


PRMIL_AVII1
RMIL SERINE/THREONINE-PROTEIN KINASE
AVIAN RETROVIRUS IC10
133-161



TRANSFORM


PRP94_VACCV
RNA-POLYMERASE-ASSOCIATED
VACCINIA VIRUS (STRAIN WR), AND
399-427



TRANSCRIPTION SPECIF
VACCINIA VIRUS (STRAIN COPENHAGE


PRP94_VARV
RNA-POLYMERASE-ASSOCIATED
VARIOLA VIRUS
399-427



TRANSCRIPTION SPECIF


PRPO1_VACCV
DNA-DIRECTED RNA POLYMERASE 147 KD
VACCINIA VIRUS (STRAIN WR)
1005-1033



POLYPEPTIDE


PRPO2_CAPVK
DNA-DIRECTED RNA POLYMERASE 132 KD
CAPRIPOXVIRUS (STRAIN KS-1)
297-333
667-696



POLYPEPTIDE


PRPO2_COWPX
DNA-DIRECTED RNA POLYMERASE 132 KD
COWPOX VIRUS (CPV)
202-236
542-578



POLYPEPTIDE


PRPO2_VACCV
DNA-DIRECTED RNA POLYMERASE 132 KD
VACCINIA VIRUS (STRAIN WR), AND
202-236
542-578



POLYPEPTIDE
VACCINIA VIRUS (STRAIN COPENHAGE


PRPO2_VARV
DNA-DIRECTED RNA POLYMERASE 132 KD
VARIOLA VIRUS
202-236
542-578



POLYPEPTIDE


PRPO7_VACCV
DNA-DIRECTED RNA POLYMERASE 19 KD
VACCINIA VIRUS (STRAIN WR), AND
38-66



POLYPEPTIDE
VACCINIA VIRUS (STRAIN COPENHAGE


PRPO7_VARV
DNA-DIRECTED RNA POLYMERASE 19 KD
VARIOLA VIRUS
38-66



POLYPEPTIDE


PRPO8_FOWP1
DNA-DIRECTED RNA POLYMERASE 18 KD
FOWLPOX VIRUS (STRAIN FP-1)
57-88



POLYPEPTIDE


PRPOA_LEVL
RNA-DIRECTED RNA POLYMERASE
LELYSTAD VIRUS (LV)
1233-1268
3133-3163
3426-3457


PRPOL_EAV
RNA-DIRECTED RNA POLYMERASE
EQUINE ARTERITIS VIRUS (EAV)
171-207
3041-3072


PRRP1_DHVI1
RNA-DIRECTED RNA POLYMERASE
DHORI VIRUS (STRAIN INDIAN/1313/61)
 96-125
199-234



SUBUNIT P1
(DHO)


PRRP1_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
138-170



SUBUNIT P1
(STRAIN A/VICTORIA/3/75)


PRRP1_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/33/50)
564-598



SUBUNIT P1


PRRP2_IAANN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
398-435
484-518



SUBUNIT P2
(STRAIN A/ANN ARBOR/6/60)


PRRP2_IADH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/DUCK/HOKKAIDO/8/80)


PRRP2_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/FOWL
484-518



SUBUNIT P2
PLAGUE VIRUS/ROSTOCK/34)


PRRP2_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/GULL/MARYLAND/704/77)


PRRP2_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/EQUINE/LONDON/1416/73)


PRRP2_IAHTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/EQUINE/TENNESSEE/5/86)


PRRP2_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/KOREA/426/68)


PRRP2_IALE1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/LENINGRAD/134/57)


PRRP2_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/LENINGRAD/134/17/57)


PRRP2_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/MALLARD/NEW YORK/6750/78)


PRRP2_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
484-518



SUBUNIT P2


PRRP2_IAPI0
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/PINTAIL/ALBERTA/119/79)


PRRP2_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/PUERTO RICO/8/34)


PRRP2_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/RUDDY
484-518



SUBUNIT P2
TURNSTONE/NEW JERSEY/47/85)


PRRP2_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/SINGAPORE/1/57)


PRRP2_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/TURKEY/MINNESOTA/833/80)


PRRP2_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/VICTORIA/3/75)


PRRP2_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/WILSON-SMITH/33)


PRRP2_IAZH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/SWINE/HONG KONG/81/78)


PRRP2_IAZH3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/SWINE/HONG KONG/126/82)


PRRP2_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/SWINE/IOWA/15/30)


PRRP2_IAZTF
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
484-518



SUBUNIT P2
(STRAIN A/SWINE/TENNESSEE/26/77)


PRRP3_IABUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
515-553
585-613



SUBUNIT P3
(STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)


PRRP3_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/FOWL
585-613



SUBUNIT P3
PLAGUE VIRUS/ROSTOCK/34)


PRRP3_IAFPW
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/FOWL
579-613



SUBUNIT P3
PLAGUE VIRUS/WEYBRIDGE)


PRRP3_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613



SUBUNIT P3
(STRAIN A/GULL/MARYLAND/704/77)


PRRP3_IAGUA
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613



SUBUNIT P3
(STRAIN A/GULL/ASTRAKHAN/227/84)


PRRP3_IAHPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613



SUBUNIT P3
(STRAIN A/EQUINE/PRAGUE/1/56)


PRRP3_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613



SUBUNIT P3
(STRAIN A/MALLARD/NEW YORK/6750/78)


PRRP3_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/RUDDY
585-613



SUBUNIT P3
TURNSTONE/NEW JERSEY/47/85)


PRRP3_IASE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613



SUBUNIT P3
(STRAIN A/SEAL/MASSACHUSETTS/133/82)


PRRP3_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613



SUBUNIT P3
(STRAIN A/TURKEY/MINNESOTA/833/80)


PRRP3_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613



SUBUNIT P3
(STRAIN A/SWINE/IOWA/15/30)


PRRP3_IAZTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS
585-613



SUBUNIT P3
(STRAIN A/SWINE/TENNESSEE/24/77)


PRRP3_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN
735-769



SUBUNIT P3
ARBOR/1/66[COLD-ADAPTED])


PRRP3_INSAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN
735-769



SUBUNIT P3
ARBOR/1/66[WILD-TYPE])


PRRP3_INCBE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85)
609-641



SUBUNIT P3


PRRP3_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/JJ/50)
609-641



SUBUNIT P3


PRRP3_THOGV
RNA-DIRECTED RNA POLYMERASE
THOGOTO VIRUS (THO)
109-145
324-356



SUBUNIT P3


PRRPA_CVH22
RNA-DIRECTED RNA POLYMERASE
HUMAN CORONAVIRUS (STRAIN 229E)
410-443
712-745
1262-1295
1963-1999
2078-2112
2474-2508
3153-3191


PRRPA_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
708-740
3544-3577
3757-3785
3933-3961


PRRPB_BEV
RNA-DIRECTED RNA POLYMERASE
BERNE VIRUS (BEV)
941-969
2137-2169
2178-2206


PRRPB_CVMA5
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN A59)
346-380
684-714
1689-1722
2698-2730


PRRPB_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
346-380
684-714
1687-1720
2356-2391
2696-2728


PRRPB_CVPFS
RNA-DIRECTED RNA POLYMERASE
PORCINE TRANSMISSIBLE
173-207
322-350
482-515




GASTROENTERITIS CORONAVIRUS


PRRPB_CVPR8
RNA-DIRECTED RNA POLYMERASE
PORCINE RESPIRATORY CORONAVIRUS
 80-113


PRRPB_IBVB
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS
636-670




(STRAIN BEAUDETTE) (IBV)


PRRPL_BUNYW
RNA POLYMERASE
BUNYAMWERA VIRUS
303-331
1096-1128


PRRPL_HANTV
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118) (KOREAN
1938-1971




HEMORRHAGIC FEVER VIRUS)


PRRPL_HRSVA
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
892-922
1181-1213




(STRAIN A2)


PRRPL_MABVM
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN MUSOKE)
144-176
698-736
1042-1074
1797-1832


PRRPL_MABVP
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN POPP)
144-176
698-736
1042-1074
2223-2253


PRRPL_MEASE
RNA POLYMERASE BETA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
193-227
647-683
788-825
1160-1192
1886-1914


PRRPL_MUMPM
RNA POLYMERASE BETA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA
1882-1913




VACCINE)


PRRPL_NDVB
RNA POLYMERASE BETA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN
626-661
1571-1603




BEAUDETTE C/45) (NDV)


PRRPL_PI2HT
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN
268-305
558-595
654-688
1562-1599
1881-1912
2025-2053




TOSHIBA) (PIV-2)


PRRPL_PI3H4
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN
41-76
735-764
784-814
2111-2139




NIH 47885)


PRRPL_RABVP
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN PV)
60-90
804-837
1365-1394
1930-1962


PRRPL_RABVS
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
60-90
804-837
1365-1394
1930-1962


PRRPL_RDV
RNA-DIRECTED RNA POLYMERASE
RICE DWARF VIRUS (RDV)
1293-1323


PRRPL_RVFVZ
RNA-DIRECTED RNA POLYMERASE
RIFT VALLEY FEVER VIRUS (STRAIN
1018-1055
2009-2044




ZH-548 M12) (RVFV)


PRRPL_SEND5
RNA POLYMERSE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
194-231
233-269
735-764
784-814
2140-2177


PRRPL_SENDE
RNA POLYMERSE BETA SUBUNIT
SENDAI VIRUS (STRAIN ENDERS)
14-51
53-89
555-584
1927-1955
1960-1997


PRRPL_SENDZ
RNA POLYMERSE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z)
194-231
233-269
735-764
784-814
2140-2177


PRRPL_SEOU8
RNA-DIRECTED RNA POLYMERASE
SEOUL VIRUS (STRAIN 80-39)
394-431
1938-1971
2081-2119


PRRPL_SV5WR
RNA POLYMERSE BETA SUBUNIT
SIMIAN VIRUS 5 (STRAIN 21004-WR) (SV5)
557-594
1094-1122
2020-2051


PRRPL_SYNV
RNA POLYMERSE BETA SUBUNIT
SONCHUS YELLOW NET VIRUS (SYNV)
126-164
605-634
820-856
918-951
1484-1517


PRRPL_TSWVB
RNA-DIRECTED RNA POLYMERASE
TOMATO SPOTTED WILT VIRUS (BRAZILIAN
43-79
843-880
2266-2298
2369-2403
2481-2511
2805-2840




ISOLATE CPNH1/BR-01) (TSWV)


PRRPL_UUK
RNA POLYMERASE
UUKUNIEMI VIRUS (UUK)
1017-1051
1147-1177
1293-1321
2060-2095


PRRPL_VSVJH
RNA POLYMERSE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
209-246
312-349
1011-1039
1662-1697
1956-1989


PRRPL_VSVJO
RNA POLYMERSE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
1011-1039
1956-1989


PRRPL_VSVSJ
RNA POLYMERSE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (STRAIN
138-171
209-246
312-349
961-999
1011-1039
1739-1772
2051-2087




SAN JUAN)


PRRPO_BWYVF
PUTATIVE RNA-DIRECTED RNA
BEET WESTERN YELLOWS VIRUS (ISOLATE
346-374



POLYMERASE
FL-1) (BWYV)


PRRPO_BYDVI
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS (ISOLATE
722-755



POLYMERASE
MAV-PSI) (BYDV)


PRRPO_BYDVP
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS (ISOLATE
722-755



POLYMERASE
PAV) (BYDV)


PRRPO_BYDVR
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS (ISOLATE
722-755



POLYMERASE
P-PAV) (BYDV)


PRRPO_CARMV
PROBABLE RNA-DIRECTED RNA
CARNATION MOTTLE VIRUS (CARMV)
 4-37



POLYMERASE


PRRPO_CGMVS
PUTATIVE RNA-DIRECTED RNA
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
443-481
725-755
1095-1132
1565-1597



POLYMERASE
(WATERMELON STRAIN S14)


PRRPO_CNV
PROBABLE RNA-DIRECTED RNA
CUCUMBER NECROSIS VIRUS (CNV)
470-501



POLYMERASE


PRRPO_CRM
PROBABLE RNA-DIRECTED RNA
CYMBIDIUM RINGSPOT VIRUS
28-62
267-300
470-501



POLYMERASE


PRRPO_IBDV5
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
186-218
274-302



POLYMERASE
(STRAIN 52/70) (IBDV)


PRRPO_IBDVA
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
260-288
511-543
599-627



POLYMERASE


PRRPO_IPNVJ
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS
360-390
749-778



POLYMERASE
(SEROTYPE JASPER)


PRRPO_IPNVS
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS
360-390
749-778



POLYMERASE
(SEROTYPE SP) (IPNV)


PRRPO_LYCVA
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
109-137
263-291
2077-2106




(STRAIN ARMSTRONG)


PRRPO_LYCVW
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
109-137




(STRAIN WE)


PRRPO_MCMV
PROBABLE RNA-DIRECTED RNA
MAIZE CHLOROTIC MOTTLE VIRUS (MCMV)
16-48
53-81



POLYMERASE


PRRPO_PLRV1
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS (STRAIN 1) (PLRV
576-607



POLYMERASE


PRRPO_PLRVW
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS (STRAIN
576-607



POLYMERASE
WAGENINGEN) (PLRV)


PRRPO_PPMVS
PUTATIVE RNA-DIRECTED RNA
PEPPER MILD MOTTLE VIRUS (STRAIN
375-407
702-730
859-891
1069-1106
1533-1565



POLYMERASE
SPAIN) (PPMV)


PRRPO_RCNMV
PUTATIVE RNA-DIRECTED RNA
RED CLOVER NECROTIC MOSAIC VIRUS
278-314
320-353



POLYMERASE
(RCNMV)


PRRPO_REOVJ
RNA-DIRECTED RNA
REOVIRUS (TYPE 2/STRAIN D5/JONES)
284-315



POLYMERASE


PRRPO_ROTBR
RNA-DIRECTED RNA
BOVINE ROTAVIRUS (STRAIN RF)
25-60
200-231
247-276



POLYMERASE SUBUNIT VPI


PRRPO_ROTBU
RNA-DIRECTED RNA
BOVINE ROTAVIRUS (STRAIN UK)
200-231
247-276



POLYMERASE SUBUNIT VPI


PRRPO_ROTPG
RNA-DIRECTED RNA
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
200-231
247-276



POLYMERASE SUBUNIT VPI


PRRPO_ROTS1
RNA-DIRECTED RNA
SIMIAN II ROTAVIRUS (STRAIN SA11)
25-60
200-231
247-276



POLYMERASE SUBUNIT VPI


PRRPO_TACV
RNA POLYMERASE
TACARIBE VIRUS
17-52
109-138
2078-2112


PRRPO_TBSVC
PROBABLE RNA-DIRECTED RNA
TOMATO BUSHY STUNT VIRUS (STRAIN
470-501



POLYMERASE
CHERRY) (TBSV)


PRRPO_TCV
PROBABLE RNA-DIRECTED RNA
TURNIP CRINKLE VIRUS (TCV)
280-318



POLYMERASE


PRRPO_TMGMV
PUTATIVE RNA-DIRECTED RNA
TOBACCO MILD GREEN MOSAIC VIRUS
67-97
128-159
209-244
376-406
450-483
855-887
1527-1559



POLYMERASE
(TMV STRAIN U2)


PRRPO_TMV
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (VULGARE) (TMV)
128-159
376-406
700-728
1533-1565



POLYMERASE


PRRPO_TMVKR
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN
128-159
376-406
700-728
1533-1565



POLYMERASE
KOREAN) (TMV)


PRRPO_TMVTO
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN
128-159
376-406
700-728
857-889
1533-1565



POLYMERASE
TOMATO/L) (TMV)


PRRPO_TNVA
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN
231-263




A) (TNV)


PRRPO_TNVD
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN
 5-40
234-270




D) (TNV)


PRRPP_CDVO
RNA POLYMERASE ALPHA SUBUNIT
CANINE DISTEMPER VIRUS (STRAIN
295-332




ONDERSTEPOORT) (CDV)


PRRPP_MEASE
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
295-332


PRRPP_MEAS1
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN IP-3-CA)
295-332


PRRPP_MEASY
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN YAMAGATA-1)
295-332


PRRPP_MUMP1
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN SBL-1)
211-248


PRRPP_MUMPE
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN ENDERS)
212-249


PRRPP_MUMPM
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA
212-249




VACCINE)


PRRPP_NDVA
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN
220-255




AUSTRALIA-VICTORIA/32) (NDV)


PRRPP_NDVB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN
220-255




BEAUDETTE C/45) (NDV)


PRRPP_P12H
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (PIV-2
216-253


PRRPP_P12HT
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN
216-253




TOSHIBA) (PIV-2)


PRRPP_P14HA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN
220-257
332-364




TOSHIBA) (PIV-4A)


PRRPP_P14HB
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4B VIRUS (STRAIN
220-257
332-364




68-333) (PIV-4B)


PRRPP_PIRYV
RNA POLYMERASE ALPHA SUBUNIT
PIRY VIRUS
134-168


PRRPP_RABVA
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN AVO1)
216-244


PRRPP_RABVC
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN CVS-11)
216-244


PRRPP_RABVE
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN ERA), AND RABIES
216-244




VIRUS (STRAIN PM)


PRRPP_RABVP
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN PV)
 89-122
216-244


PRRPP_RABVS
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
216-244


PRRPP_SEND5
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
530-566


PRRPP_SEND6
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN 6/94)
530-566


PRRPP_SENDF
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN FUSHIMI)
530-566


PRRPP_SENDH
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN HARRIS)
530-566


PRRPP_SENDZ
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z)
530-566


PRRPP_SV5
RNA POLYMERASE ALPHA SUBUNIT
SIMIAN VIRUS 5 (STRAIN W3) (SV5)
199-236


PRRPP_VSVJM
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE
198-230




NEW JERSEY/STRAIN MISSOUR


PRRPP_VSVJO
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE
197-230




NEW JERSEY/STRAIN OGDEN)


PSODC_VACCC
SUPEROXIDE DISMUTASE LIKE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
19-55


PSODC_VACCV
SUPEROXIDE DISMUTASE LIKE PROTEIN
VACCINIA VIRUS (STRAIN WR)
19-55


PSODC_VARV
SUPEROXIDE DISMUTASE LIKE PROTEIN
VARIOLA VIRUS
19-55


PSPHR_AMEPV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS
58-86
138-172
627-659
671-701




(AMEPV)


PSPI1_MYXVL
SERPIN 1
MYXOMA VIRUS (STRAIN LAUSANNE)
167-200


PSPI3_VACCC
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN COPENHAGEN)
112-140


PSPI3_VACCV
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN WR)
112-140


PSPI3_VARV
SERINE PROTEINASE INHIBITOR 1
VARIOLA VIRUS
116-144


PIAG8_FOWPV
TRANS-ACTIVATOR PROTEIN FP0
FOWLPOX VIRUS
199-230


PTALA_BFDV
LARGE T ANTIGEN
BUDDERIGAR FLEDGLING DISEASE VIRUS
 99-129
172-210
461-491




(BFDV)


PTAMI_POVHA
MIDDLE T ANTIGEN
HAMSTER POLYOMAVIRUS
106-138


PTAMI_POVM3
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
43-80


PTAMI_POVMA
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
43-80


PTAMI_POVMC
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN
43-80




CRAWFORD SMALL-PLAQUE)


PTASM_POVBA
SMALL T ANTIGEN
POLYOMAVIRUS BK (STRAIN AS)
130-162


PTASM_POVBK
SMALL T ANTIGEN
POLYOMAVIRUS BK
130-162


PTASM_POVHA
SMALL T ANTIGEN
HAMSTER POLYOMAVIRUS
106-138


PTASM_POVMA
SMALL T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
43-80


PTASM_SV40
SMALL T ANTIGEN
SIMIAN VIRUS 40 (SV40)
132-164


PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
143-173
1469-1503
1791-1819
3102-3137




(HUMAN HERPESVIRUS 4)


PTEGU_HCMVA
PROBABLE LARGE TEGUMENT PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN
161-192
699-736
812-840
2199-2228




AD169)


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
222-259
566-601
615-643
1436-1469
2037-2072


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
265-297
569-589
1072-1106
3363-3392




AB4P) (EHV-1)


PTEGU_HSVSA
PROBABLE LARGE TEGUMENT PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
467-505
714-751
823-861
926-960
1503-1536
2421-2457


PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
369-400


PTMAF_AVIS4
TRANSFORMING PROTEIN MAF
AVIAN MUSCULOAPONEUROTIC
230-267




FIBROSARCOMA VIRUS AS42


PTOP2_ASFB7
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (STRAIN
119-153
1105-1142




BA71V) (ASFV)


PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (ISOLATE
119-153
1104-1141




MALAWILIL 20/1) (ASFV)


PTREL_AVIRE
REL TRANSFORMING PROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
189-226


PTYSY_VZVD
THYMIDYLATE SYNTHASE
VARICELLA-ZOSTER VIRUS (STRAIN
121-156




DUMAS) (VZV)


PUIL_HSV6U
PROTEIN IL
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
171-203




UGANDA-1102)


PUDPE_NPVAC
ECDYSTEROID UDP-
AUTOGRAPHA CALIFORNICA NUCLEAR
185-219
387-425
452-484



GLUCOSYLTRANSFERASE PRECURSO
POLYHEDROSIS VIRUS (ACMNPV)


PUL02_HCMVA
HYPOTHETICAL PROTEIN UL2
HUMAN CYTOMEGALOVIRUS (STRAIN
25-59




AD169)


PUL06_EBV
VIRION PROTEIN BDRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
355-386




(HUMAN HERPESVIRUS 4)


PUL06_HSVI1
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
404-436


PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
222-251
437-475




AB4P) (EHV-1)


PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
299-330


PUL06_VZVD
VIRION GENE 54 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
223-252
502-530




DUMAS) (VZV)


PUL07_HCMVA
HYPOTHETICAL PROTEIN UL7
HUMAN CYTOMEGALOVIRUS (STRAIN
186-216




AD169)


PUL07_HSVEB
GENE 55 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
Nov-39




AB4P) (EHV-1)


PUL08_HCMVA
HYPOTHETICAL PROTEIN UL8
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
65-96


PUL08_HSVI1
PROTEIN UL8
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
614-648


PUL08_VZVD
GENE 52 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
227-255




DUMAS) (VZV)


PUL09_HSVI1
ORIGIN OF REPLICATION BINDING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
678-713


PUL09_VZVD
ORIGIN OF REPLICATION BINDING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
168-204




DUMAS) (VZV)


PUL14_PRVN3
UL14 PROTEIN HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3) (PRV)
40-76


PUL16_HSVI1
PROTEIN UL16
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
22-52


PUL17_HSV6U
PROTEIN 10R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
302-339




UGANDA-1102)


PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
294-328




AB4P) (EHV-1)


PUL21_PRVN3
PROTEIN UL21 HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3) (PRV)
242-271


PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
56-92
375-412




DUMAS) (VZV)


PUL24_HCMVA
HYPOTHETICAL PROTEIN UL24
HUMAN CYTOMEGALOVIRUS (STRAIN
52-87




AD169)


PUL24_ILTVT
PROTEIN UL24 HOMOLOG
INFECTIOUS LARYNGOTRACHEITIS VIRUS
158-196




(STRAIN THORNE V882)


PUL25_HSVEB
VIRION PROTEIN UL25
EQUINE HERPESVIRUS TYPE 1 (STRAIN
343-379




AB4P) (EHV-1)


PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
290-323


PUL25_VZVD
VIRION GENE 34 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
540-571




DUMAS) (VZV)


PUL28_HCMVA
HYPOTHETICAL PROTEIN UL28
HUMAN CYTOMEGALOVIRUS (STRAIN
287-316




AD169)


PUL31_HCMVA
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN
464-501




AD169)


PUL31_HSVA
GENE 69 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
163-197


PUL32_EBV
PROBABLE MAJOR ENVELOPE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
367-405



GLYCOPROTEIN BFLF1
(HUMAN HERPESVIRUS 4)


PUL32_HSVI1
PROBABLE MAJOR ENVELOPE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
404-438
564-592



GLYCOPROTEIN UL32


PUL32_HSVEB
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPESVIRUS TYPE 1
 81-115


PUL32_HSVSA
PROBABLE MAJOR ENVELOPE
HERPESVIRUS SAIMIRI (STRAIN 11)
276-307



GLYCOPROTEIN 68


PUL32_VZVD
PROBABLE MAJOR ENVELOPE
VARICELLA-ZOSTER VIRUS (STRAIN
553-581



GLYCOPROTEIN 26
DUMAS) (VZV)


PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 98-130


PUL35_HCMVA
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN
138-169




AD169)


PUL36_HCMVA
HYPOTHETICAL PROTEIN UL36
HUMAN CYTOMEGALOVIRUS (STRAIN
186-223




AD169)


PUL37_EBV
PROTEIN BOLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 85-123




(HUMAN HERPESVIRUS 4)


PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
702-732
778-812




AB4P) (EHV-1)


PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
566-602


PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
598-629
706-736
776-806




DUMAS) (VZV)


PUL38_HCMVA
HYPOTHETICAL PROTEIN UL38
HUMAN CYTOMEGALOVIRUS (STRAIN
157-188




AD169)


PUL41_VZVD
HOST SHUTOFF VIRION PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
274-307




DUMAS) (VZV)


PUL43_HSVI1
MEMBRANE PROTEIN UL43
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
41-70


PUL45_HSVI1
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
34-64
277-308




DUMAS) (VZV)


PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN
438-471
741-777




AD169)


PUL47_HSVE4
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 4
580-615


PUL47_HSVEB
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
587-622




AB4P) (EHV-1)


PUL49_HSVI1
TEGUMENT PROTEIN UL49
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17
226-259


PUL49_HSVBP
TEGUMENT PROTEIN UL49 HOMOLOG
BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2)
135-168


PUL52_EBV
PROBABLE DNA REPLICATION PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
582-617



BSLF1
(HUMAN HERPESVIRUS 4)


PUL52_HSVI1
DNA REPLICATION PROTEIN UL52
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
599-629
771-805


PUL52_HSVEB
DNA REPLICATION PROTEIN UL52
EQUNE HERPESVIRUS TYPE 1 (STRAIN
316-344
580-618
912-947




AB4P) (EHV-1)


PUL52_HSVSA
PROBABLE DNA REPLICATION GENE 56
HERPESVIRUS SAIMIRI (STRAIN 11)
229-267
374-411



PROTEIN


PUL53_HCMVA
PROTEIN UL53
HUMAN CYTOMEGALOVIRUS (STRAIN
213-248




AD169)


PUL53_HSV6U
UL53 PROTEIN HOMOLOG
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
105-139




UGANDA-1102)


PUL60_HCMVA
HYPOTHETICAL PROTEIN UL60
HUMAN CYTOMEGALOVIRUS (STRAIN
120-148




AD169


PUL70_HCMVA
PROBABLE REPLICATION PROTEIN UL70
HUMAN CYTOMEGALOVIRUS (STRAIN
36-65
626-664




AD169)


PUL77_HCMVA
VIRION PROTEIN UL77
HUMAN CYTOMEGALOVIRUS (STRAIN
381-413
565-598




AD169)


PUL78_HCMVA
HYPOTHETICAL PROTEIN UL78
HUMAN CYTOMEGALOVIRUS (STRAIN
262-290
303-341




AD169)


PUL79_HSVSA
HYPOTHETICAL GENE 18 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
158-195


PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
130-159




UGANDA-1102)


PUL87_HSVSA
HYPOTHETICAL GENE 24 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
322-355


PUL88_HCMVA
HYPOTHETICAL PROTEIN UL88
HUMAN CYTOMEGALOVIRUS (STRAIN
309-337




AD169)


PUL88_HSV6U
HYPOTHETICAL PROTEIN 6R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
150-187
238-272




UGANDA-1102)


PUL91_HSVSA
HYPOTHETICAL GENE 30 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
23-53


PUL92_EBV
HYPOTHETICAL PROTEIN BDLF4
EPSTEIN-BARR VIRUS (STRAIN B95-8)
106-144




(HUMAN HERPESVIRUS 4)


PUL92_HSVSA
HYPOTHETICAL GENE 31 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
123-157


PUL93_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN
387-420




AD169)


PUL95_EBV
HYPOTHETICAL PROTEIN BGLF3
EPSTEIN-BARR VIRUS (STRAIN B95-8)
111-145




(HUMAN HERPESVIRUS 4)


PULB8_HCMVA
HYPOTHETICAL PROTEIN UL118
HUMAN CYTOMEGALOVIRUS (STRAIN
102-130
152-181




AD169


PULC1_HCMVA
HYPOTHETICAL PROTEIN UL121
HUMAN CYTOMEGALOVIRUS (STRAIN
129-165




AD169)


PULC8_HCMVA
HYPOTHETICAL PROTEIN UL128
HUMAN CYTOMEGALOVIRUS (STRAIN
64-96




AD169)


PULC9_HCMVA
HYPOTHETICAL PROTEIN UL129
HUMAN CYTOMEGALOVIRUS (STRAIN
66-99




AD169)


PULD0_HCMVA
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN
 81-114




AD169)


PUNG_EBV
URACIL-DNA GLYCOSYLASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
159-189




(HUMAN HERPESVIRUS 4)


PUNG_VACCC
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
 82-117


PUNG_VACCV
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN WR)
 82-117


PUNG_VARV
URACIL-DNA GLYCOSYLASE
VARIOLA VIRUS
 82-117


PUS02_HCMVA
HYPOTHETICAL PROTEIN HQLF2
HUMAN CYTOMEGALOVIRUS (STRAIN
43-73




AD169)


PUS07_HCMVA
HYPOTHETICAL PROTEIN HXLF5
HUMAN CYTOMEGALOVIRUS (STRAIN
153-190




AD169)


PUS09_HCMVA
HYPOTHETICAL PROTEIN HXLF3
HUMAN CYTOMEGALOVIRUS (STRAIN
179-213




AD169)


PUS10_HCMVA
HYPOTHETICAL PROTEIN HXLF2
HUMAN CYTOMEGALOVIRUS (STRAIN
137-170




AD169)


PUS12_HCMVA
HYPOTHETICAL PROTEIN HVLF6
HUMAN CYTOMEGALOVIRUS (STRAIN
29-67
113-142




AD169)


PUS13_HCMVA
HYPOTHETICAL PROTEIN HVLF5
HUMAN CYTOMEGALOVIRUS (STRAIN
11-45




AD169)


PUS15_HCMVA
HYPOTHETICAL PROTEIN HVLF3
HUMAN CYTOMEGALOVIRUS (STRAIN
343-375




AD169)


PUS16_HCMVA
HYPOTHETICAL PROTEIN HVLF2
HUMAN CYTOMEGALOVIRUS (STRAIN
151-188
243-274




AD169)


PUS18_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN
185-222




AD169)


PUS22_HCMVA
EARLY NUCLEAR PROTEIN HWLF1
HUMAN CYTOMEGALOVIRUS (STRAIN
270-299




AD169)


PUS26_HCMVA
HYPOTHETICAL PROTEIN HHLF5
HUMAN CYTOMEGALOVIRUS (STRAIN
132-164




AD169)


PUS27_HCMVA
G-PROTEIN COUPLED RECEPTOR
HUMAN CYTOMEGALOVIRUS (STRAIN
247-285



HOMOLOG US27
AD169)


PUS29_HCMVA
HYPOTHETICAL PROTEIN HHRF4
HUMAN CYTOMEGALOVIRUS (STRAIN
246-276




AD169)


PUS30_HCMVA
HYPOTHETICAL PROTEIN HHRF5
HUMAN CYTOMEGALOVIRUS (STRAIN
208-246




AD169)


PV125_AMVLE
125 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN
263-292




425/ISOLATE LEIDEN


PV13K_TRVPL
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PLB)
24-62


PV143_NPVAC
HELICASE
AUTOGRAPHA CALIFORNICA NUCLEAR
312-342




POLYHEDROSIS VIRUS


PV17K_BSMV
17 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
40-75


PV1A_CMVFN
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
674-709




(CMV)


PV270_ASFB7
L270 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN
103-135




BA71V) (ASFV)


PV2A_BBMV
2A PROTEIN
BROAD BEAN MOTTLE VIRUS
636-673


PV2A_CCMV
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
325-363
639-673
762-799




(CCMV)


PV2A_CMVFN
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
208-243
292-320




(CMV)


PV2A_CMVQ
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
205-240




(CMV)


PV2A_TAV
2A PROTEIN
TOMATO ASPERMY VIRUS (TAV)
297-325


PV30K_TRVTC
29.1 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
102-133


PV3A_BBMV
3A PROTEIN
BROAD BEAN MOTTLE VIRUS
155-187


PV3A_BMV
3A PROTEIN
BROME MOSAIC VIRUS (BMV)
159-189


PV3A_CCMV
3A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
160-188




(CCMV)


PV3A_IBVB
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 5-43




(STRAIN BEAUDETTE) (IBV)


PV3A_IBVM
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 5-42




(STRAIN M41) (IBV)


PV3A_IBVP3
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 5-42


PV3A_IBVU5
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 5-42




(STRAIN UK/183/66) (IBV)


PV51K_ACLSV
50.8 KD PROTEIN
APPLE CHLOROTIC LEAF SPOT VIRUS
 70-106




(ACLSV)


PV51K_BWYVF
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE
366-398




FL-1) (BWYV)


PV51K_BWYVG
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE
366-398




GB1) (BWYV)


PV56K_PLRV1
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
360-392




(PLRV)


PV56K_PLRVW
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN
360-392




WAGENINGEN) (PLRV)


PV58K_BSMV
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
320-353


PV70K_PLRV1
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
220-257




(PLRV)


PV70K_PLRVW
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN
220-257




WAGENINGEN) (PLRV)


PV90K_AMVLE
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN
103-131




425/ISOLATE LEIDEN)


PVA04_VACCC
PROTEIN A4
VACCINIA VIRUS (STRAIN COPENHAGEN)
217-251


PVA04_VACCV
PROTEIN A4
VACCINIA VIRUS (STRAIN WR)
217-251


PVA04_VARV
PROTEIN A4
VARIOLA VIRUS
207-241


PVA11_VACCC
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
 95-132


PVA11_VARV
PROTEIN A11
VARIOLA VIRUS
 96-133


PVA18_VACCC
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
390-421


PVA18_VACCV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN WR)
390-421


PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
390-421


PVA23_VACCC
PROTEIN A23
VACCINIA VIRUS (STRAIN COPENHAGEN)
 81-111
170-203


PVA23_VARV
PROTEIN A23
VARIOLA VIRUS
 81-111
170-203


PVA31_VACCC
PROTEIN A31
VACCINIA VIRUS (STRAIN COPENHAGEN)
42-76


PVA31_VACCV
PROTEIN A31
VACCINIA VIRUS (STRAIN WR)
42-76


PVA31_VARV
PROTEIN A31
VARIOLA VIRUS
42-76


PVA32_VACCV
PROTEIN A32
VACCINIA VIRUS (STRAIN WR), AND
48-79




VACCINIA VIRUS (STRAIN COPENHAG


PVA32_VARV
PROTEIN A32
VARIOLA VIRUS
18-49


PVA40_VACCC
PROTEIN A40
VACCINIA VIRUS (STRAIN COPENHAGEN)
 4-37


PVA43_VACCC
PROTEIN A43
VACCINIA VIRUS (STRAIN COPENHAGEN)
 94-129


PVA43_VACCV
PROTEIN A43
VACCINIA VIRUS (STRAIN WR)
 94-129


PVA43_VARV
PROTEIN A43
VARIOLA VIRUS
 95-130


PVA51_VACCC
PROTEIN A51
VACCINIA VIRUS (STRAIN COPENHAGEN)
109-143


PVA51_VACCV
PROTEIN A51
VACCINIA VIRUS (STRAIN WR)
109-143


PVAL1_BCV
AL1 PROTEIN
BEET CURLY TOP VIRUS (BCTV)
 89-118


PVAL1_BGMV
AL1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
 89-118


PVAL1_CLVK
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST
 88-117




KENYAN 844


PVAL1_CLVN
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
 88-117




NIGERIAN)


PVAL1_PYMVV
AL1 PROTEIN
POTATO YELLOW MOSAIC VIRUS (ISOLATE
 89-118




VENEZUELA)


PVAL1_TGMV
AL1 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS (TGMV)
 90-119


PVAL1_TYLCM
AL1 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
 89-118




(STRAIN MARMANDE) (TYLCV)


PLAL1_TYLCV
AL1 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
 87-116




(TYLCV)


PVAL3_BCTV
AL3 PROTEIN
BEET CURLY TOP VIRUS (BCTV)
 82-115


PVAL3_CLVK
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST
 77-113




KENYAN 844)


PVAL3_CLVN
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN
 77-113




NIGERIAN)


PVAL3_TYLCM
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
 78-116




(STRAIN MARMANDE) (TYLCV)


PVAL3_TYLCV
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
 77-113




(TYLCV


PVAT_CAMVC
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
 81-116




CM-1841) (CAMV)


PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
102-130




D/H) (CAMV


PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
 81-116




BBC) (CAMV)


PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
 81-116




NY8153) (CAMV)


PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
 81-116




PV147) (CAMV)


PVAT_CAMVS
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
20-53
 81-116




STRASBOURG) (CAMV)


PVB04_VACCC
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)
124-156
489-525


PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
124-156
489-525


PVB04_VARV
PROTEIN B4
VARIOLA VIRUS
489-525


PVB16_COWPX
INTERLEUKIN-1 BINDING PROTEIN
COWPOX VIRUS (CPV)
 89-126



PRECURSOR


PVB16_VACCV
INTERLEUKIN-1 BINDING PROTEIN
VACCINIA VIRUS (STRAIN WR)
 89-126



PRECURSOR


PVB19_VACCC
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
213-244


PVB19_VACCD
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN DAIREN 1)
211-242


PVB19_VACCV
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN WR)
211-242


PVB19_VARV
SURFACE ANTIGEN S PRECURSOR
VARIOLA VIRUS
211-242


PVBR1_BGMV
BR1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
166-198


PVC03_SFVKA
G-PROTEIN COUPLED RECEPTOR
SHOPE FIBROMA VIRUS (STRAIN
 98-130



HOMOLOG C3
KASZA) (SFV)


PVC04_VACCC
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
109-139
182-216


PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
109-139
183-215


PVC04_VARV
PROTEIN C4
VARIOLA VIRUS
109-139


PVC06_VACCC
PROTEIN C6
VACCINIA VIRUS (STRAIN COPENHAGEN)
36-67


PVC06_VACCV
PROTEIN C6
VACCINIA VIRUS (STRAIN WR)
36-67


PVC06_VARV
PROTEIN C6
VARIOLA VIRUS
36-67


PVC07_SFVKA
HYPOTHETICAL PROTEIN C7
SHOPE FIBROMA VIRUS (STRAIN
60-97




KASZA) (SFV)


PVC09_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
573-610


PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
573-610


PVC10_SFVKA
HYPOTHETICAL PROTEIN C10
SHOPE FIBROMA VIRUS (STRAIN
 85-121




KASZA) (SFV)


PVC10_VACCC
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
121-158


PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
121-158


PVC10_VARV
PROTEIN C10
VARIOLA VIRUS
121-158


PVC21_VACCC
PROTEIN C21/B27
VACCINIA VIRUS (STRAIN COPENHAGEN)
 3-34


PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
148-183
200-230




(HUMAN HERPESVIRUS 4)


PVCAP_HCMVA
MAJOR CAPSID PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN
43-78
128-161
258-286




AD169)


PVCAP_HSVI1
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
19-49


PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
124-161
666-696
841-869




UGANDA-1102)


PVCAP_HSVEB
MAJOR CAPSID PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
17-54
198-232
272-301




AB4P) (EHV-1)


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
144-179
196-226
734-769
1062-1096


PVCAP_PRVIS
MAJOR CAPSID PROTEIN
PSEUDORABIES VIRUS (STRAIN INDIANA S)
189-221
260-289




(PRV)


PVCAP_VZVD
MAJOR CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN
31-68




DUMAS) (VZV)


PVCOM_ADE02
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 2
 86-115


PVCOM_ADE05
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 5
 85-114


PVD03_VACCC
PROTEIN D3
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-50
146-182


PVD03_VACCV
PROTEIN D3
VACCINIA VIRUS (STRAIN WR)
12-50
146-182


PVD03_VARV
PROTEIN D3
VARIOLA VIRUS
12-50
146-182


PVD05_FOWP1
92.6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
315-352


PVD05_VACCC
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
320-348


PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
320-348


PVD05_VARV
PROTEIN D5
VARIOLA VIRUS
320-348


PVD10_FOWP1
PROTEIN D10
FOWLPOX VIRUS (STRAIN FP-1)
114-143


PVE05_VACCD
PROTEIN E5
VACCINIA VIRUS (STRAIN DAIREN 1)
31-60


PVE06_VACCC
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
226-260
430-458
511-540


PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
226-260
430-458
511-540


PVE06_VARV
PROTEIN E6
VARIOLA VIRUS
430-458
511-540


PVE10_VACCC
PROTEIN E10
VACCINIA VIRUS (STRAIN COPENHAGEN)
 3-41


PVE10_VACCV
PROTEIN E10
VACCINIA VIRUS (STRAIN WR)
 3-41


PVE10_VARV
PROTEIN E10
VARIOLA VIRUS
 3-41


PVE12_HPV16
PROBABLE E1 PROTEIN 2
HUMAN PAPILLOMAVIRUS TYPE 16
102-131


PVE18_NPVAC
EARLY 18.5 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
45-77




POLYHEDROSIS VIRUS (ACMNPV)


PVE1_HPV05
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
 4-35


PVE1_HPV11
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
258-291


PVE1_HPV13
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
255-288


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
238-267
519-547


PVE1_HPV35
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
230-263


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
242-271


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
105-138
193-231


PVE1_HPV58
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
238-267


PVE1_HPV5B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
 6-35


PVE1_HPV6B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
258-291


PVE1_PAPVD
E1 PROTEIN
DEER PAPILLOMAVIRUS
163-201


PVE1_PCPV1
E1 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS
257-290




TYPE 1


PVE26_NPVAC
EARLY 25.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
118-150




POLYHEDROSIS VIRUS (ACMNPV)


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
151-182


PVE2_RHPV1
E2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1 (RHPV 1)
117-147


PVE41_NPVAC
EARLY 40.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
14-52




POLYHEDROSIS VIRUS (ACMNPV)


PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
19-56


PVE5A_HPV6B
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
19-56


PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6C
19-56


PVE5_HPV13
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
19-56


PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
 89-118


PVE5_PCPV1
PROBABLE E5 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS
21-58




TYPE 1


PVE5_RHPV1
PROBABLE E5 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1 (RHPV 1)
109-140


PVE6_HPV1A
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
 91-128


PVE7_HPV05
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
55-90


PVE7_HPV08
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
55-90


PVE7_HPV11
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
47-83


PVE7_HPV16
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
47-81


PVE7_HPV1A
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
45-77


PVE7_HPV31
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
47-83


PVE7_HPV33
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
47-83


PVE7_HPV35
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
48-84


PVE7_HPV41
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
63-94


PVE7_HPV47
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
55-90


PVE7_HPV51
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
61-94


PVE7_HPV58
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
48-84


PVE7_HPV5B
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
55-90


PVE7_HPV6B
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
47-83


PVE7_PAPVD
E7 PROTEIN
DEEP PAPILLOMAVIRUS
48-86


PVE7_PAPVE
E7 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS (EEPV)
60-93


PVE94_NPVAC
EARLY 94 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
123-157
650-678




POLYHEDROSIS VIRUS (ACMNPV)


PVEF_GVTN
VIRAL ENHANCING FACTOR
TRICHOPLUSIA N1 GRANULOSIS VIRUS
154-182




(TNGV)


PVENV_BEV
ENVELOPE PROTEIN
BERNE VIRUS (BEV)
16-51
 87-117


PVENV_DHV11
ENVELOPE GLYCOPROTEIN PRECURSOR
DHORI VIRUS (STRAIN INDIAN/1313/61)
297-335




(DHO)


PVENV_MCV1
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS
203-236




SUBTYPE 1 (MCVI)


PVENV_MCV2
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS
203-236




SUBTYPE 2 (MCVII)


PVENV_VACCC
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
208-241


PVENV_VACCI
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN 1HD-J)
208-241


PVENV_VACCP
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN L-IVP)
208-241


PVENV_VACCV
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN WR)
208-241


PVENV_VARV
MAJOR ENVELOPE PROTEIN
VARIOLA VIRUS
155-187
208-241


PVF03_VACCC
PROTEIN F3
VACCINIA VIRUS (STRAIN COPENHAGEN)
 2-40
61-93


PVF03_VACCV
PROTEIN F3
VACCINIA VIRUS (STRAIN WR)
 2-40
61-93


PVFP1_FOWPV
PROTEIN FP1
FOWLPOX VIRUS
297-330


PVFP4_FOWPV
PROTEIN FP4
FOWLPOX VIRUS
237-267


PVFP7_CAPVK
PROTEIN F7
CAPRIPOX VIRUS (STRAIN KS-1)
 89-118


PVFUS_VACCC
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
28-61


PVFUS_VACCV
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
28-61


PVFUS_VARV
14 KD FUSION PROTEIN
VARIOLA VIRUS
28-61


PVG01_HSV11
HYPOTHETICAL GENE 1 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
317-346




CATFISH VIRUS) (CCV)


PVG02_HSVEB
HYPOTHETICAL GENE 2 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN
163-196




AB4P) (EHV-1)


PVG02_VACCV
ISATIN-BETA-THIOSEMICARBAZONE
VACCINIA VIRUS (STRAIN WR), AND
 92-120



DEPENDENT PROTEI
VACCINIA VIRUS (STRAIN COPENHAGE


PVG02_VARV
ISATIN-BETA-THIOSEMICARBAZONE
VARIOLA VIRUS
 92-120



DEPENDENT PROTEI


PVG03_HSVI1
HYPOTHETICAL GENE 3
ICTALURID HERPESVIRUS 1 (CHANNEL
108-136



PROTEIN
CATFISH VIRUS) (CCV)


PVG06_HSVI1
HYPOTHETICAL GENE 6 MEMBRANE
ICTALURID HERPESVIRUS 1 (CHANNEL
54-83



PROTEIN
CATFISH VIRUS) (CCV)


PVG06_VACCC
PROTEIN G6
VACCINIA VIRUS (STRAIN COPENHAGEN)
 99-136


PVG06_VARV
PROTEIN G6
VARIOLA VIRUS
 99-136


PVG07_VACCC
PROTEIN G7
VACCINIA VIRUS (STRAIN COPENHAGEN)
113-145


PVG07_VARV
PROTEIN G7
VARIOLA VIRUS
113-145


PVG09_VACCC
PROTEIN F1
VACCINIA VIRUS (STRAIN COPENHAGEN)
303-338


PVG09_VACCV
PROTEIN F1
VACCINIA VIRUS (STRAIN WR)
266-301


PVG09_VARV
PROTEIN F1
VARIOLA VIRUS
303-338


PVG11_HSV11
HYPOTHETICAL GENE 11 ZINC-BINDING
ICTALURID HERPESVIRUS 1 (CHANNEL
150-183



PROTEIN
CATFISH VIRUS) (CCV)


PVG12_HSV11
HYPOTHETICAL GENE 12 ZINC-BINDING
ICTALURID HERPESVIRUS 1 (CHANNEL
206-243



PROTEIN
CATFISH VIRUS) (CCV)


PVG12_HSVSA
HYPOTHETICAL GENE 12 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 68-106


PVG1_SPVIR
CAPSID PROTEIN
SPIROPLASMA VIRUS SPVI-R8A2 B
254-292
303-337
414-452


PVG22_HSV11
HYPOTHETICAL GENE 22 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
300-337
647-678




CATFISH VIRUS) (CCV)


PVG23_HSV11
HYPOTHETICAL GENE 23 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
 70-108




CATFISH VIRUS) (CCV)


PVG26_HSV11
HYPOTHETICAL GENE 26 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
 94-125




CATFISH VIRUS) (CCV)


PVG27_HSVSA
HYPOTHETICAL GENE 27 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
36-74


PVG28_HSV11
HYPOTHETICAL GENE 28 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
491-521




CATFISH VIRUS) (CCV)


PVG2R_AMEPV
HYPOTHETICAL G2R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
180-217




(AMEPV)


PVG2_SPV4
GENE 2 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
209-244


PVG35_HSV11
HYPOTHETICAL GENE 35 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
15-46
190-226




CATFISH VIRUS) (CCV)


PVG36_HSVSA
POSSIBLE TYROSINE-PROTEIN KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
151-185


PVG39_HSV11
HYPOTHETICAL GENE 39 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
543-577
648-682




CATFISH VIRUS) (CCV)


PVG40_HSVSA
HYPOTHETICAL GENE 40 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
187-216


PVG41_HSV11
HYPOTHETICAL GENE 41 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
11-45
202-233




CATFISH VIRUS) (CCV)


PVG42_HSV11
HYPOTHETICAL GENE 42 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
 91-125




CATFISH VIRUS) (CCV)


PVG43_HSV11
HYPOTHETICAL GENE 43 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
109-140
157-185




CATFISH VIRUS) (CCV)


PVG46_HSV11
PROBABLE MAJOR GLYCOPROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
888-925




CATFISH VIRUS) (CCV)


PVG48_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
329-357


PVG50_HSVSA
PROBABLE TRANSCRIPTION ACTIVAOR
HERPESVIRUS SAIMIRI (STRAIN 11)
113-141



EDRF1


PVG51_HSV11
HYPOTHETICAL GENE 51
ICTALURID HERPESVIRUS 1 (CHANNEL
29-64
 84-120



MEMBRANE PROTEIN
CATFISH VIRUS) (CCV)


PVG52_HSV11
HYPOTHETICAL GENE 52 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
 96-134




CATFISH VIRUS) (CCV)


PVG55_HSV11
HYPOTHETICAL GENE 55 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
100-129




CATFISH VIRUS) (CCV)


PVG56_HSV11
HYPOTHETICAL GENE 56 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
364-396
631-667
1091-1126




CATFISH VIRUS) (CCV)


PVG58_HSV11
HYPOTHETICAL GENE 58 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
342-375
480-508




CATFISH VIRUS) (CCV)


PVG58_HSVSA
GENE 58 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
25-60
195-233


PVG59_HSV11
HYPOTHETICAL GENE 59
ICTALURID HERPESVIRUS 1 (CHANNEL
 82-118



MEMBRANE PROTEIN
CATFISH VIRUS) (CCV)


PVG61_HSV11
HYPOTHETICAL GENE 61 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
 76-109




CATFISH VIRUS) (CCV)


PVG64_HSV11
HYPOTHETICAL GENE 64 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
55-89
363-401
420-452




CATFISH VIRUS) (CCV)


PVG65_HSV11
HYPOTHETICAL GENE 65 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
801-836
1146-1174
1290-1326




CATFISH VIRUS) (CCV)


PVG67_HSV11
HYPOTHETICAL GENE 67 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
1150-1185




CATFISH VIRUS) (CCV)


PVG6_SPV1R
GENE 6 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
60-89


PVG71_HSVSA
HYPOTHETICAL GENE 71 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
128-158


PVG72_HSV11
HYPOTHETICAL GENE 72 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
445-478
720-751
1158-1189
1252-1285




CATFISH VIRUS) (CCV)


PVG75_HSV11
HYPOTHETICAL GENE 75 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
263-291
387-422




CATFISH VIRUS) (CCV)


PVG76_HSV11
HYPOTHETICAL GENE 76 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL
187-221




CATFISH VIRUS) (CCV)


PVG7_SPVIR
GENE 7 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
18-46


PVGF1_IBVB
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
1719-1747
1856-1891
2108-2146
3601-3633




(STRAIN BEAUDETTE) (IBV)


PVGH3_HCMVA
GLYCOPROTEIN H301 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN
 80-115
157-185




AD169)


PVGL2_CVBF
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
1259-1294


PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN L9)
651-681


PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
1259-1294


PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
1259-1294


PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
1259-1294


PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN VACCINE)
1259-1294


PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR
HUMAN CORONAVIRUS (STRAIN 229E)
1053-1088


PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN WILD
1267-1304




TYPE 4) (MHV-4)


PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN A59
1215-1252


PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN
1267-1304




JHMV/VARIANT CL-2)


PVGL2_CVMJH
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN JHM)
1126-1163


PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
632-665
736-764
1328-1363




GASTROENTERITIS CORONAVIRUS


PVGL2_CVPMI
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
632-665
736-764
1328-1363




GASTROENTERITIS CORONAVIRUS


PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
630-663
734-762
1326-1361




GASTROENTERITIS CORONAVIRUS


PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
630-663
734-762
1326-1361




GASTROENTERITIS CORONAVIRUS


PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
512-540
1104-1139


PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
408-441
512-540
1104-1139




(STRAIN RM4) (PRCV)


PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE
630-663
734-762
1326-1361




GASTROENTERITIS CORONAVIRUS (STRAIN




NEB7)


PVGL2_FIPV
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONTIS VIRUS
635-668
739-767
1331-1366




(STRAIN 79-1146) (FIPV)


PVGL2_IBVB
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
153-188




(STRAIN BEAUDETTE) (IBV)


PVGLB_HCMVA
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN
116-147
706-743




AD169)


PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN
116-147
707-744




TOWNE)


PVGLB_HSV6U
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
 72-110




UGANDA-1102)


PVGLB_HSVB1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
254-288


PVGLB_HSVB2
GLYCOPROTEIN B-1 PRECURSOR
BOVINE HERPESVIRUS 2 (STRAIN BMV)
745-774




(BOVINE MAMMILLITIS VIRUS


PVGLB_HSVBC
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS 1 (STRAIN COOPER
253-287


PVGLB_ILTV6
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS
442-472




(STRAIN 632) (ILIV)


PVGLB_ILTVS
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS
452-482




(STRAIN SA-2) (ILTV)


PVGLB_ILTVT
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS
452-482




(STRAIN THORNE V882) (ILTV)


PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN
135-163
738-776




SMITH)


PVGLC_HSV11
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
467-500


PVGLC_HSVIK
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS
467-500




(TYPE 1/STRAIN KOS)


PVGLC_HSV2
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
435-465


PVGLC_HSV23
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS
436-466




(TYPE 2/STRAIN 333)


PVGLC_HSVBC
GLYCOPROTEIN GH1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN
475-507




COOPER)


PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN
351-388
513-548




DUMAS) (VZV)


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN
351-388
513-548




SCOTT) (VZV)


PVGLD_HSVEA
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN
340-370




AB1) (EHV-1)


PVGLD_HSVEB
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
41-70
390-420


PVGLD_HSVEK
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
41-70
390-420


PVGLE_HSVE4
GLYCOPROTEIN E
EQUINE HERPESVIRUS TYPE 4
 95-125


PVGLE_HSVEB
GLYCOPROTEIN E PRECURSOR
EQUINE HERPESVIRUS TYPE 1
 63-100
390-420


PVGLE_HSVEL
GLYCOPROTEIN E PRECURSOR
EQUINE HERPESVIRUS TYPE 1
 63-100
392-422


PVGLE_PRVR1
GLYCOPROTEIN G1 PRECURSOR
PSEUDORABIES VIRUS (STRAIN RICE) (PRV)
332-369


PVGLE_BRSVA
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
265-301
482-511




(STRAIN A51908) (BRS)


PVGLF_BRSVC
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
484-513




(STRAIN COPENHAGEN) (BRS)


PVGLF_BRSVR
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
484-513




(STRAIN RB94) (BRS)


PVGLF_CDYO
FUSION GLYCOPROTEIN PRECURSOR
CANINE DISTEMPER VIRUS (STRAIN
562-596




ONDERSTEPOORT) (CDV)


PVGLF_HRSV1
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
484-513


PVGLF_HRSVA
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
484-513




(STRAIN A2)


PVGLF_HRSVL
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
484-513




(SUBGROUP A/STRAIN LONG)


PVGLF_HRSVR
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
484-513




(STRAIN RSS-2)


PVGLF_MEASE
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN EDMONSTON)
224-256
451-484


PVGLF_MEAS1
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN IP-3-CA
227-259
454-487


PVGLF_MEASY
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN YAMAGATA-1)
224-256
451-484


PVGLF_MUMP1
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL-1)
 5-38
446-474


PVGLF_MUMPM
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN MIYAHARA
446-474




VACCINE)


PVGLF_MUMPR
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN RW)
446-474


PVGLF_MUMPS
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL)
 5-38
446-474


PVGLF_NDV1
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN
132-165




ITALIEN/45) (NDV)


PVGLF_NDVL
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN
132-165




LAS/46) (NDV)


PVGLF_PHODV
FUSION GLYCOPROTEIN PRECURSOR
PHOCINE DISTEMPER VIRUS
531-565


PVGLF_PHHC
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 1 VIRUS
456-484




(STRAIN C39)


PVGLF_P13B
FUSION GLYCOPROTEIN PRECURSOR
BOVINE PARAINFLUENZA 3 VIRUS
453-481


PVGLF_P13H4
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 3 VIRUS
453-481




(STRAIN NIH 47885


PVGLF_RINDK
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN KABETTE O)
220-252
447-480




(RDV)


PVGLF_RINDL
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN L) (RDV)
220-252
447-480


PVGLF_SEND5
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
460-488


PVGLF_SENDF
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN FUSHIMI)
460-488


PVGLF_SENDH
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HARRIS)
460-488


PVGLF_SENDJ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HVJ)
460-488


PVGLF_SENDZ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z)
460-488


PVGLF_SV5
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 5 (STRAIN W3) (SV5)
446-474


PVGLF_TRTV
FUSION GLYCOPROTEIN PRECURSOR
TURKEY RHINOTRACHEITIS VIRUS (TRTV)
452-481


PVGLG_HSVEB
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 1
327-364




(STRAIN AB4P) (EHV-1)


PVGLG_SYNV
SPIKE GLYCOPROTEIN PRECURSOR
SONCHUS YELLOW NET VIRUS (SYNV)
524-553


PVGLG_VSVIG
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
450-488




(SEROTYPE INDIANA/STRAIN GLASGOW)


PVGLG_VSVJO
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
457-492




(SEROTYPE NEW JERSEY/STRAIN OGDEN)


PVGLG_VSVO
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
450-488




(STRAIN ORSAY)


PVGLG_VSVSJ
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS
450-488




(STRAIN SAN JUAN)


PVGLH_HCMVA
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS
691-719




(STRAIN AD169)


PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS
690-718




(STRAIN TOWNE)


PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
215-247
640-677


PVGLH_HSVE4
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 4
814-850


PVGLH_HSVEB
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 1
807-843


PVGLI_HCMVA
IMMEDIATE EARLY GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS
158-194



PRECURSOR
(STRAIN AD169)


PVGLM_BUNGE
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
197-227
438-468
 982-1020
1049-1084


PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
190-220


PVGLM_BUNSH
M POLYPROTEIN PRECURSOR
BUNYAVIRUS SNOWSHOE HARE
190-220
344-381


PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
193-228
434-472
823-854


PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
DUGBE VIRUS
244-273
637-672
886-915
935-965
1403-1441


PVGLM_HANTB
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1)
610-641
1081-1119




(KOREAN HEMORRHAGIC FEVER VIRUS)


PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
188-222
612-643
1082-1120


PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
188-222
612-643
1083-1121


PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN 76-118)
188-222
612-643
1083-1121


PVGLM_INSV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS (INSV)
269-307
1028-1062


PVGLM_PHV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS (PHV)
616-649
1088-1121


PVGLM_PTPV
M POLYPROTEIN PRECURSOR
PUNTA TORO PHLEBOVIRUS
949-982
1275-1309


PVGLM_PUUMH
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN HALLNAS B1)
620-653
1092-1125


PVGLM_PUUMS
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN SOTKAMO)
620-653
1092-1125


PVGLM_RVFV
M POLYPROTEIN PRECURSOR
RIFT VALLEY FEVER VIRUS (RVFV)
620-650
830-863


PVGLM_RVFVZ
M POLYPROTEIN PRECURSOR
RIFT VALLEY FEVER VIRUS
620-650
830-863
1156-1185




(STRAIN ZH-648 M12) (RVFV)


PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
610-641
1081-1119


PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R22)
605-641
1082-1120


PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11)
610-641
1081-1119




(SAPPORO RAT VIRUS)


PVGLM_UUK
M POLYPROTEIN PRECURSOR
UUKUNIEMI VIRUS (UUK)
431-468
966-995


PVGLP_BEY
PEPLOMER GLYCOPROTEIN PRECURSOR
BERNE VIRUS (BEV)
1491-1526


PVGLY_JUNIN
GLYCOPROTEIN POLYPROTEIN PRECURSOR
JUNIN ARENAVIRUS
12-45


PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN GA391)
237-265


PVGLY_LASSJ
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN JOSIAH)
238-266


PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
PICHINDE ARENAVIRUS
12-50


PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS
12-50


PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V5
12-50
 89-124


PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V7)
12-50
 89-124


PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN TRVL 11598)
12-50
 89-124


PVGNB_CPMV
GENOME POLYPROTEIN B
COWPEA MOSAIC VIRUS (CPMV)
1527-1555


PVGNM_CPMV
GENOME POLYPROTEIN M
COWPEA MOSAIC VIRUS (CPMV)
209-242
741-771


PVGNM_CPSMV
GENOME POLYPROTEIN M
COWPEA SEVERE MOSAIC VIRUS
50-86
479-515




(STRAIN DG)


PVGNM_RCMV
GENOME POLYPROTEIN M
RED CLOVER MOTTLE VIRUS (RCMV)
766-799


PVGP2_EBV
PROBABLE MEMBRANE ANTIGEN GP220
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 78-111




(HUMAN HERPESVIRUS 4)


PVGP3_EBV
ENVELOPE GLYCOPROTEIN GP340
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 78-111




(HUMAN HERPESVIRUS 4)


PVH02_VACCC
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-89


PVH02_VACCV
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN WR)
54-89


PVH02_VARV
LATE PROTEIN H2
VARIOLA VIRUS


PVH05_VACCC
PROTEIN H5
VACCINIA VIRUS (STRAIN COPENHAGEN)
115-149


PVH05_VACCV
PROTEIN H5
VACCINIA VIRUS (STRAIN WR)
115-149


PVH05_VARV
PROTEIN H5
VARIOLA VIRUS
133-167


PVHEL_LSV
PROBABLE HELICASE
LILY SYMPTOMLESS VIRUS (LSV)
107-143


PVI01_VACCC
PROTEIN I1
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-82


PVI01_VARV
PROTEIN I1
VARIOLA VIRUS
54-82


PVI06_VACCV
PROTEIN I6
VACCINIA VIRUS (STRAIN WR)
55-88


PVI06_VARV
PROTEIN I6
VARIOLA VIRUS
55-88


PVI08_VACCC
PUTATIVE RNA HELICASE I8
VACCINIA VIRUS (STRAIN COPENHAGEN)
591-624


PVI08_VACCV
PUTATIVE RNA HELICASE I8
VACCINIA VIRUS (STRAIN WR)
591-624


PVI08_VARV
PUTATIVE RNA HELICASE I8
VARIOLA VIRUS
591-624


PVIE1_HCMVA
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS
243-271




(STRAIN AD169)


PV1E1_HCMVT
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS
243-271




(STRAIN TOWNE)


PVIF_BIV06
VIRION INFECTIVITY FACTOR
BOVINE IMMUNODEFICIENCY VIRUS
42-78




(ISOLATE 106) (BIV)


PVIF_BIV27
VIRION INFECTIVITY FACTOR
BOVINE IMMUNODEFICIENCY VIRUS
42-78




(ISOLATE 127) (BIV)


PVIF_SIVGB
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
46-78




(ISOLATE GB1)


PVIF_SIVMK
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
 82-111




(K6W ISOLATE) (SIV-MAC)


PVIMP_EBV
PROBABLE INTEGRAL MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
125-159



PROTEIN BBRF3
(HUMAN HERPESVIRUS 4)


PVIMP_HCMVA
PROBABLE INTEGRAL MEMBRANE PROTEIN
HUMAN CYTOMEGALOVIRUS
 68-100




(STRAIN AD169


PVIMP_HSV11
PROBABLE INTEGRAL MEMBRANE PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 83-114
136-171
250-282


PVIMP_HSVEB
PROBABLE INTEGRAL MEMBRANE PROTEIN
EQUINE HERPESVIRUS TYPE 1
24-56
 93-127
145-180
332-361




(STRAIN AB4P) (EHV-1)


PVIMP_HSVSA
INTEGRAL MEMBRANE PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 76-111


PVINT_SSV1
PROBABLE INTEGRASE
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
253-291


PVJ05_VACCC
PROTEIN J5
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-85


PVJ05_VACCV
PROTEIN J5
VACCINIA VIRUS (STRAIN WR)
54-85


PVJ05_VARV
PROTEIN J5
VARIOLA VIRUS
54-85


PVK04_VACCC
PROTEIN K4
VACCINIA VIRUS (STRAIN COPENHAGEN)
 87-120


PVK04_VACCV
PROTEIN K4
VACCINIA VIRUS (STRAIN WR)
 87-120


PVK05_VACCC
PROTEIN K5
VACCINIA VIRUS (STRAIN COPENHAGEN)
 74-103


PVK05_VACCV
PROTEIN K5
VACCINIA VIRUS (STRAIN WR)
 87-116


PVL02_VACCC
PROTEIN L2
VACCINIA VIRUS (STRAIN COPENHAGEN)
39-76


PVL02_VACCV
PROTEIN L2
VACCINIA VIRUS (STRAIN WR)
39-76


PVL02_VARV
PROTEIN L2
VARIOLA VIRUS
39-76


PLV03_VACCC
PROTEIN L3
VACCINIA VIRUS (STRAIN COPENHAGEN)
292-322


PVL03_VACCV
PROTEIN L3
VACCINIA VIRUS (STRAIN WR)
292-322


PVL03_VARV
PROTEIN L3
VARIOLA VIRUS
291-321


PVL05_VACCV
PROTEIN L5
VACCINIA VIRUS (STRAIN WR), AND
16-45




VACCINIA VIRUS (STRAIN COPENHAGE


PVL05_VARV
PROTEIN L5
VARIOLA VIRUS
16-45


PVL1_HPVSB
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
373-406


PVL2_CRPVK
PROBABLE L2 PROTEIN
COTTONTAIL RABBIT (SHOPE)
26-57




PAPILLOMAVIRUS (STRAIN KANSAS) (CRPV)


PVL2_HPV05
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
27-57


PVL2_HPV08
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
27-57


PVL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
26-56


PVL2_HPV39
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
29-59
285-313


PVL2_HPV42
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
344-379


PVL2_HPV47
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
26-57


PVL2_HPV51
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
29-59


PVL2_HPV5B
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
27-57


PVL2_HPVME
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE ME180
29-59


PVL2_PCPV1
PROBABLE L2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS
29-59




TYPE 1


PVL96_IRV1
L96 PROTEIN
TIPULA IRIDESCENT VIRUS (TIV) (INSECT
144-177
686-718




IRRIDESCENT VIRUS TYPE 1)


PVM1_REOVD
MINOR VIRION STRUCTURAL PROTEIN MU-2
REOVIRUS (TYPE 3/STRAIN DEARING
280-318
324-361


PVM1_REOVL
MINOR VIRION STRUCTURAL PROTEIN MU-2
REOVIRUS (TYPE 1/STRAIN LANG)
280-318


PVM21_REOVD
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
168-199



MU-1/MU-1C


PVM22_REOVD
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
168-199



MU-1/MU-1C


PVM2_REOVJ
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
168-199



MU-1/MU-1C


PVM2_REOVL
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
168-199



MU-1/MU-1C


PVM3_REOVD
MAJOR NONSTRUCTURAL PROTEIN MU-NS
REOVIRUS (TYPE 3/STRAIN DEARING)
333-364


PVMAT_SV5
MATRIX PROTEIN
SIMIAN VIRUS 5 (STRAIN W3) (SV5)
308-342


PVMAT_TRTV
MATRIX PROTEIN
TURKEY RHINOTRACHEITIS VIRUS (TRTV)
122-150


PVME1_CVBM
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
 64-102


PVME1_CVHOC
E1 GLYCOPROTEIN
HUMAN CORONAVIRUS (STRAIN OC43)
 64-102


PVME1_CVMA5
E1 GLYCOPROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
 65-103


PVME1_CVMJH
E1 GLYCOPROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
 65-103


PVME1_CVTKE
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS (TCV)
 64-102


PVME1_1BVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 73-101




(STRAIN BEAUDETTE) (IBV)


PVME1_1BVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 73-101




(STRAIN BEAUDETTE M42) (IBV)


PVMEM_EBV
PROBABLE MEMBRANE PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
178-213




(HUMAN HERPESVIRUS 4)


PVMP_CERV
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS (CERV)
 93-126


PVMP_SOCMV
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
66-98
273-303


PVMSA_HPBDB
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (BROWN
201-238
269-302




SHANGHAI DUCK ISOLATE S5) (DHBV)


PVMSA_HPBDC
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
194-227
268-301




(STRAIN CHINA) (DHBV)


PVMSA_HPBDU
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (DHBV)
157-190
231-264


PVMSA_HPBDW
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (WHITE
194-228
269-302




SHANGHAI DUCK ISOLATE S31) (DHBV)


PVMSA_HPBGS
MAJOR SURFACE ANTIGEN PRECURSOR
GROUND SQUIRREL HEPATITIS VIRUS
209-243
271-307




(GSHV)


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN PRECURSOR
HERON HEPATITIS B VIRUS
159-195
236-269


PVMSA_HPBV0
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
70-98


PVMSA_HPBV2
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW2)
244-272


PVMSA_HPBV4
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADR4)
244-272


PVMSA_HPBV9
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
244-272




STRAIN 991)


PVMSA_HPBVA
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (STRAIN ALPHA1)
233-261


PVMSA_HPBVD
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE AD)
70-98


PVMSA_HPBVI
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
233-261




STRAIN INDONESIA/PIDW420)


PVMSA_HPBVJ
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
233-261




STRAIN JAPAN/PJDW233)


PVMSA_HPBVL
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (STRAIN LSH/
233-261




CHIMPANZEE ISOLATE)


PVMSA_HPBVN
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADR/
70-98




STRAIN NC-1)


PVMSA_HPBVO
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
233-261




STRAIN OKINAWA/PODW282)


PVMSA_HPBVP
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/
244-272




STRAIN PHILIPPINO/PFDW294)


PVMSA_HPBVR
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADR)
244-272


PVMSA_HPBVS
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE AR)
70-98


PVMSA_HPBVW
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW)
233-261


PVMSA_HPBVY
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE AYW)
233-261


PVMSA_HPBVZ
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADYW)
233-261


PVMSA_WHV1
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 1
207-241
269-305


PVMSA_WHV59
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 59
212-246
274-310


PVMSA_WHV7
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 7
212-246
274-310


PVMSA_WHV8
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 8
212-246
274-310


PVMSA_WHV81
PROBABLE MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
212-246
274-305



PRECURSOR
(INFECTIOUS CLONE)


PVMSA_WHVW6
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS W64
125-161




(ISOLATE PWS23)


PVMT2_IAZH
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/
10-42




SWINE/IOWA/15/30)


PVMT8_MYXVL
M-T8 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
 5-34
141-170


PVMT9_MYXVL
MT-9 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
246-282


PVN02_VACCC
PROTEIN N2
VACCINIA VIRUS (STRAIN COPENHAGEN)
31-68


PVN02_VACCV
PROTEIN N2
VACCINIA VIRUS (STRAIN WR)
31-68


PVN02_VARV
PROTEIN N2
VARIOLA VIRUS
31-68


PVN34_ROTPC
NONSTRUCTURAL PROTEIN NS34
PORCINE ROTAVIRUS (GROUP C/
336-366




STRAIN COWDEN)


PVNCA_AAV2
DNA REPLICATION PROTEIN
ADENO-ASSOCIATED VIRUS 2 (AAV2)
163-196
365-401


PVNCS_PAVBO
PROBABLE NONCAPSID PROTEIN NS1
BOVINE PARVOVIRUS (BPV)
180-217
346-377
439-471


PVNS1_AHSV4
NONSTRUCTURAL PROTEIN NS1
AFRICAN HORSE SICKNESS VIRUS
351-380




(SEROTYPE 4/STRAIN VACCINE)


PVNS1_IAALA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
114-144




(STRAIN A/ALASKA/6/77)


PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
114-144




(STRAIN A/ANN ARBOR/6/60)


PVNS1_IACHI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS
114-144




(STRAIN A/CHILE/1/83)


PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




CHICKEN/GERMANY/N/49)


PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141




CHICKEN/JAPAN/24)


PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




DUCK/ALBERTA/60/76)


PVNS1_IADE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141




DUCK/ENGLAND/1/56)


PVNS1_IADU3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141




DUCK/UKRAINE/1/63)


PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144




FORT MONMOUTH/1/47)


PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144




FORT WARREN/1/50)


PVNS1_IAFPR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FOWL
107-144




PLAGUE VIRUS/ROSTOCK/34)


PVNS1_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144




LENINGRAD/134/57)


PVNS1_IALEN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144




LENINGRAD/54/1)


PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




MALLARD/ALBERTA/88/76)


PVNS1_IAMAN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




MALLARD/NEW YORK/6750/78)


PVNS1_IAMAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




MALLARD/NEW YORK/6874/78)


PVNS1_IAMYN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141




MYNAH/HANEDA-THAI/76)


PVNS1_IAPI0
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




PINTAIL/ALBERTA/119/79)


PVNS1_IAPI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




PINTAIL/ALBERTA/121/79)


PVNS1_IAPI2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




PINTAIL/ALBERTA/268/78)


PVNS1_IAP13
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




PINTAIL/ALBERTA/358/79)


PVNS1_IAPUE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144




PUERTO RICO/8/34)


PVNS1_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




TURKEY/BETHLEHEM-GLILIT/1492-B/82)


PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




TURKEY/CANADA/63)


PVNS1_IATRS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
104-141




TERN/SOUTH AFRICA/61)


PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




TERN/TURKMENIA/18/72)


PVNS1_IAUDO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144




UDORN/307/72)


PVNS1_IAUSS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
114-144




USSR/90/77)


PVNS1_IAZI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
107-144




SWINE/IOWA/15/30


PVNS1_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/PA/79)
266-295


PVNS1_INCAA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA C VIRUS (STRAIN C/
222-255




ANN ARBOR/1/50)


PVNS1_INCCA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA C VIRUS (STRAIN C/
222-255




CALIFORNIA/78)


PVNS2_HRSV1
NONSTRUCTURAL PROTEIN 2
HUMAN RESPIRATORY SYNCYTIAL VIRUS
20-49




(SUBGROUP B/STRAIN 18537)


PVNS2_HRSVA
NONSTRUCTURAL PROTEIN 2
HUMAN RESPIRATORY SYNCYTIAL VIRUS
20-49




(STRAIN A2)


PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/LEE/40
48-77


PVNS2_INBYA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/
48-77




YAMAGATA/1/73)


PVNS4_CVMS
NONSTRUCTURAL PROTEIN 4
MURINE CORONAVIRUS MHV (STRAIN S)
17-45


PVNS4_CVPFS
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE
 4-34




GASTROENTERITIS CORONAVIRUS




(STRAIN FS77


PVNS4_CVPPU
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE
 4-39




GASTROENTERITIS CORONAVIRUS




(STRAIN PUR


PVNS4_CVPRM
NONSTRUCTURAL PROTEIN 4
PORCINE REPIRATORY CORONAVIRUS
 4-39


PVNST_CVMA5
30 KD NONSTRUCTURAL PROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
45-80


PVNST_CVMJH
30 KD NONSTRUCTURAL PROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
49-84


PVNST_INCGL
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/
222-255




GREAT LAKES/1167/54)


PVNST_INCH
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/
222-255




JOHANNESBURG/1/66)


PNVST_INCMI
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/
222-255




MISSISSIPPI/80)


PVNST_INCYA
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/
222-255




YAMAGATA/10/81)


PVNUA_PRVKA
PROBABLE NUCLEAR ANTIGEN
PSEUDORABIES VIRUS
756-784




(STRAIN KAPLAN) (PRV)


PVNUC_DHVH
NUCLEOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/61)
297-331
441-470




(DHO)


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
354-388




CHICKEN/PENNSYLVANIA/1/83)


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
354-388




EQUINE/LONDON/1416/73)


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
354-388




EQUINE/PRAGUE/1/56)


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
354-388




EQUINE/TENNESSEE/5/86)


PVNUC_MABVM
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
16-46


PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
16-46


PVO01_VACCC
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
511-539
550-581


PVO01_VARV
PROTEIN O1
VARIOLA VIRUS
511-539


PVOR1_NMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS (NMV)
121-150
641-671


PVOR1_PVMR
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN) (PVM)
1667-1703


PVOR1_SMYEA
150 KD PROTEIN
STRAWBERRY MILD YELLOW EDGE-
121-153




ASSOCIATED VIRUS (SMYEAV)


PVP03_HSVSA
PROBABLE MEMBRANE ANTIGEN 3
HERPESVIRUS SAIMIRI (STRAIN 11)
462-493


PVP10_NPVAC
P10 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
 4-38




POLYHEDROSIS VIRUS (ACMNPV)


PVP10_NPVOP
P10 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
 4-38




POLYHEDROSIS VIRUS (OPMNPV)


PVP10_RBSDV
PROTEIN S10
RICE BLACK STREAKED DWARF VIRUS
260-291




(RBSDV)


PVP19_HSVEB
CAPSID ASSEMBLY AND DNA
EQUINE HERPESVIRUS TYPE 1
239-268
287-325



MATURATION PROTEIN
(STRAIN AB4P) (EHV-1)


PVP23_HCMVA
PROBABLE CAPSID PROTEIN VP23
HUMAN CYTOMEGALOVIRUS
141-172




(STRAIN AD169)


PVP23_HSV6U
PROBABLE CAPSID PROTEIN VP23
HERPES SIMPLEX VIRUS
46-79
206-238




(TYPE 6/STRAIN UGANDA-1102)


PVP23_HSVEB
PROBABLE CAPSID PROTEIN VP23
EQUINE HERPESVIRUS TYPE 1
18-48




(STRAIN AB4P) (EHV-1)


PVP23_VZVD
PROBABLE CAPSID PROTEIN VP23
VARICELLA-ZOSTER VIRUS
224-253




(STRAIN DUMAS) (VZV)


PVP2_AHSV4
OUTER CAPSID PROTEIN VP2
AFRICAN HORSE SICKNESS VIRUS
408-441




(SEROTYPE 4/STRAIN VACCINE)


PVP2_BTV10
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 10/
649-683




ISOLATE USA)


PVP2_BTV11
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 11/
558-586
649-683




ISOLATE USA)


PVP2_BTV17
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 17/
391-424
564-593




ISOLATE USA)


PVP2_BTV1A
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/
654-688




ISOLATE AUSTRALIA)


PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/
654-688




ISOLATE SOUTH AFRICA)


PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE
878-915




VIRUS (SEROTYPE 1) (EHDV-1)


PVP2_ROTBR
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
334-367
522-557


PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
334-367
523-558


PVP2_ROTHW
RNA-BINDING PROTEIN VP2
HUMAN ROTAVIRUS (SEROTYPE 1/
342-377
532-567




STRAIN WA)


PVP2_ROTPC
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS (GROUP C/
514-549
589-617
811-841




STRAIN COWDEN)


PVP2_ROTS1
RNA-BINDING PROTEIN VP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
335-368
523-558


PVP35_VACCC
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN COPENHAGEN)
278-311



PROTEIN P35


PVP35_VACCV
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN WR)
278-311



PROTEIN P35


PVP35_VARV
IMMUNODOMINANT ENVELOPE
VARIOLA VIRUS
279-312



PROTEIN P35


PVP39_NPVOP
MAJOR CAPSID PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
107-141




POLYHEDROSIS VIRUS (OPMNPV)


PVP3_EHDV1
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE
383-412
734-770




VIRUS (SEROTYPE 1) (EHDV-1)


PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
383-412
734-770


PVP3_RDV
MAJOR 114 KD STRUCTURAL PROTEIN
RICE DWARF VIRUS (RDV)
297-330


PVP3_ROTS1
INNER CORE PROTEIN VP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
652-688


PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN B95-8)
429-457




(HUMAN HERPESVIRUS 4)


PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI (STRAIN 11
119-152


PVP40_ILTVT
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS
 84-119




(STRAIN THORNE V882) (ILTV)


PVP40_VZVD
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS
485-516




(STRAIN DUMAS) (VZV


PVP47_NPVAC
VIRAL TRANSCRIPTION REGULATOR P47
AUTOGRAPHA CALIFORNICA NUCLEAR
239-270




POLYHEDROSIS VIRUS (ACMNPV)


PVP4A_VACCC
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
553-591


PVP4A_VACCV
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN WR)
553-591


PVP4A_VARV
MAJOR CORE PROTEIN P4A PRECURSOR
VARIOLA VIRUS
554-592


PVP4_ROTG1
OUTER CAPSID PROTEIN VP4
ROTAVIRUS (GROUP B/STRAIN IDIR)
 93-122
468-499


PVP4_WTV
NONSTRUCTURAL PROTEIN PNS4
WOUND TUMOR VIRUS (WTV)
278-308
624-659


PVP5_BRD
OUTER CAPSID PROTEIN VP5
BROADHAVEN VIRUS (BRD)
 96-133
295-326


PVP5_BTVIA
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/
295-324




ISOLATE AUSTRALIA)


PVP5_BTV1
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/
295-324




ISOLATE SOUTH AFRICA)


PVP5_BTV2A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 2/
295-324




ISOLATE USA)


PVP5_EHDV1
OUTER CAPSID PROTEIN VP5
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
290-325




(SEROTYPE 1) (EHDV-1)


PVP5_WTV
OUTER COAT PROTEIN P5
WOUND TUMOR VIRUS (WTV)
691-719


PVP61_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/
159-187




ISOLATE USA)


PVP62_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/
155-183
210-245




ISOLATE USA)


PVP62_MRDV
PROBABLE NONSTRUCTURAL 36.3 KD
MAIZE ROUGH DWARF VIRUS (MRDV)
25-61
222-257



PROTEIN


PVP64_NPVOP
MAJOR ENVELOPE GLYCOPROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
285-313



PRECURSOR
POLYHEDROSIS VIRUS (OPMNPV)


PVP67_NPVAC
MAJOR ENVELOPE GLYCOPROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
281-316



PRECURSOR
POLYHEDROSIS VIRUS (ACMNPV)


PVP67_NPVGM
MAJOR ENVELOPE GLYCOPROTEIN
GALLERIA MELLONELLA NUCLEAR
198-233




POLYHEDROSIS VIRUS (GMNPV)


PVP6_BTV11
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/
155-183




ISOLATE USA)


PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/
155-183




ISOLATE USA)


PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/
159-187




ISOLATE SOUTH AFRICA)


PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/
131-159




ISOLATE USA)


PVP6_WTV
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (WTV)
180-209


PVP6_WTVNJ
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (STRAIN NJ) (WTV)
180-209


PVP79_NPVAC
79 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
405-442




POLYHEDROSIS VIRUS (ACMNPV)


PVP7_WTV
NONSTRUCTURAL PROTEIN PNS7
WOUND TUMOR VIRUS (WTV)
454-490


PVP87_NPVOP
CAPSID PROTEIN P87
ORGYIA PSEUDOTSUGATA MULTICAPSID
 77-112




POLYHEDROSIS VIRUS (OPMNPV)


PVP8_BTV10
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139




(SEROTYPE 10/ISOLATE USA)


PVP8_BTV11
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139




(SEROTYPE 11/ISOLATE USA)


PVP8_BTV13
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139




(SEROTYPE 13/ISOLATE USA)


PVP8_BTV17
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139




(SEROTYPE 17/ISOLATE USA)


PVP8_BTV1A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139




(SEROTYPE 1/ISOLATE AUSTRALIA)


PVP8_BTV1S
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139




(SEROTYPE 1/ISOLATE SOUTH AFRICA)


PVP8_BTV2A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS
104-139




(SEROTYPE 2/ISOLATE USA)


PVP8_RDV
OUTER CAPSID PROTEIN P8
RICE DWARF VIRUS (RDV)
374-412


PVP8_WTV
OUTER CAPSID PROTEIN P8
WOUND TUMOR VIRUS (WTV)
164-195
379-412


PVPHE_NPVAC
29 KD POLYHEDRAL ENVELOPE PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
145-173




POLYHEDROSIS VIRUS (ACMNPV)


PVPHE_NPVOP
32 KD POLYHEDRAL ENVELOPE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
122-151




POLYHEDROSIS VIRUS (OPMNPV)


PVPR_HV1A2
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
37-74




(ARV2/SF2 ISOLATE) (HIV-1)


PVPR_HV2BE
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73




(ISOLATE BEN) (HIV-2)


PVPR_HV2CA
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73




(ISOLATE CAM2) (HIV-2)


PVPR_HV2D1
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73




(ISOLATE D194) (HIV-2)


PVPR_HV2D2
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73




(ISOLATE D205,7) (HIV-2)


PVPR_HV2NZ
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73




(ISOLATE NIH-Z) (HIV-2)


PVPR_HV2RO
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73




(ISOLATE ROD) (HIV-2)


PVPR_HV2SB
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
41-73




(ISOLATE SBLISY) (HIV-2)


PVPR_HV2ST
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
40-72




(ISOLATE ST) (HIV-2)


PVPR_SIVCZ
VPR PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
37-74




(SIV(CPZ)) (CIV)


PVPR_SIVMI
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69




(MM142-83 ISOLATE) (SIV-MAC)


PVPR_SIVMK
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69




(K6W ISOLATE) (SIV-MAC)


PVPR_SIVML
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69




(K78 ISOLATE) (SIV-MAC)


PVPR_SIVS4
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69




(F236/SMH4 ISOLATE) (SOOTY MANGA


PVPR_SIVSP
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
37-69




(PBJ/BC13 ISOLATE) (SOOTY MANGABE


PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-33




(BH10 ISOLATE, HXB3 ISOLATE)


PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-33




(BH8 ISOLATE) (HIV-1)


PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-34




(BRAIN ISOLATE) (HIV-1)


PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-33




(BRU ISOLATE) (HIV-1)


PVPU_HVH12
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-33




(HXB2 ISOLATE) (HIV-1)


PVPU_HVIJR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-34




(JRCSF ISOLATE) (HIV-1)


PVPU_HVIPV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-33




(PV22 ISOLATE) (HIV-1)


PVPU_JSRV
VPU PROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
116-154


PVPX_LDV
VPX PROTEIN
LACTATE DEHYDROGENASE-ELEVATING
25-55




VIRUS (LDV)


PVPY_BIV2
ORF-Y PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS
35-71




(ISOLATE 127) (BIV)


PVRNA_BSMV
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
290-319
676-705


PVS05_ROTH1
NONSTRUCTURAL PROTEIN NCVP2
HUMAN ROTAVIRUS (STRAIN IGV-80-3)
198-230


PVS05_ROTPC
NONSTRUCTURAL PROTEIN NS53
PORCINE ROTAVIRUS (GROUP C/
 88-119
358-392




STRAIN COWDEN)


PVS05_ROTS1
NONSTRUCTURAL PROTEIN NCVP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
315-347


PVS06_ROTBR
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN RF)
55-92


PVS06_ROTBS
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/
64-92
312-340




STRAIN SHINTOKU)


PVS06_ROTBU
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
55-92


PVS06_ROTEF
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN FI-14)
55-92


PVS06_ROTEH
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN H-2)
55-92


PVS06_ROTH1
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/
55-92




STRAIN 1076)


PVS06_ROTHC
VP6 PROTEIN
HUMAN ROTAVIRUS (GROUP C/
64-92
312-340




STRAIN BRISTOL)


PVS06_ROTHS
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/
55-92




STRAIN S2)


PVS06_ROTHW
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/
55-92
313-349




STRAIN WA)


PVS06_ROTPC
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/
64-92




STRAIN COWDEN)


PVS06_ROTPG
VP6 PROTEIN
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
55-92
313-349


PVS06_ROTS1
VP6 PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
55-92
313-349


PVS08_ROTS1
NONSTRUCTURAL PROTEIN NCVP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
274-302


PVS09_ROTHT
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/
131-159




STRAIN ST. THOMAS 3)


PVS09_ROTPB
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 4/
131-159




STRAIN BEN-144)


PVS10_ROTBN
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN NCDV)
52-89


PVS10_ROTBU
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN UK)
52-89


PVS10_ROTH2
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A28)
52-89


PVS10_ROTH7
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/
52-89




CLONE 2)


PVS10_ROTH8
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/
52-89




CLONE 6


PSV10_ROTHW
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (SEROTYPE 1/
52-89




STRAIN WA)


PVS10_ROTS1
NONSTRUCTURAL GLYCOPROTEIN NCVP5
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
52-89


PVS11_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/
 99-130




STRAIN WA)


PVS11_REOVJ
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 2/
346-384




STRAIN D5/JONES)


PVS11_REOVL
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 1/STRAIN LANG)
110-147


PVT1_SFVKA
PROTEIN T1 PRECURSOR
SHOPE FIBROMA VIRUS
147-182




(STRAIN KASZA) (SFV)


PVT2_MYXVL
TUMOR NECROSIS FACTOR SOLUBLE
MYXOMA VIRUS (STRAIN LAUSANNE)
261-290



RECEPTOR PRECUR


PVT2_SFVKA
TUMOR NECROSIS FACTOR SOLUBLE
SHOPE FIBROMA VIRUS
211-249



RECEPTOR PRECUR
(STRAIN KASZA) (SFV)


PVT3A_CAPV1
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
116-150


PVTER_EBV
PROBABLE DNA PACKAGING PROTEIN
EPSTEIN-BARR VIRUS
166-199
505-543




(STRAIN B95-8) (HUMAN HERPESVIRUS 4)


PVTER_HCMVA
PROBABLE DNA PACKAGING PROTEIN
HUMAN CYTOMEGALOVIRUS
176-209




(STRAIN AD169)


PVTER_HSV11
PROBABLE DNA PACKAGING PROTEIN
ICTALURID HERPESVIRUS 1
756-788




(CHANNEL CATFISH VIRUS) (CCV)


PVX_SEND6
X PROTEIN
SENDAI VIRUS (STRAIN 6/94)
57-93


PY104_ADE07
HYPOTHETICAL 10.4 KD EARLY PROTEIN
HUMAN ADENOVIRUS TYPE 7
55-83


PY10K_MSVS
HYPOTHETICAL 10.9 KD PROTEIN
MAIZE STREAK VIRUS
24-54




(SOUTH-AFRICAN ISOLATE) (MSV)


PY10K_WDV
HYPOTHETICAL 10 KD PROTEIN
WHEAT DWARF VIRUS (WDV)
22-59


PY119_SSV1
HYPOTHETICAL 11.9 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
29-64


PY11K_PASV
HYPOTHETICAL 11.9 KD PROTEIN (ORF VI)
PANICUM STREAK VIRUS
29-61


PY11K_ROTS1
HYPOTHETICAL 11 KD PROTEIN IN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
53-87



SEGMENT S11


PY11K_TYDVA
HYPOTHETICAL 11.2 KD PROTEIN
TOBACCO YELLOW DWARF VIRUS
28-62




(STRAIN AUSTRALIA) (TYDV)


PY14K_NPVAC
HYPOTHETICAL 13.8 KD PROTEIN IN
AUTOGRAPHA CALIFORNICA NUCLEAR
 65-101



39 KD PROTEIN 5′REG
POLYHEDROSIS VIRUS (ACMNPV)


PY18K_SSV1
HYPOTHETICAL 18.0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
100-132



(ORF B-166)


PY20K_SSV1
HYPOTHETICAL 20.4 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
129-167



(ORF E-178)


PY21K_MSVN
HYPOTHETICAL 21.7 KD PROTEIN
MAIZE STREAK VIRUS
122-155




(NIGERIAN ISOLATE) (MSV)


PY2_SOCMV
HYPOTHETICAL PROTEIN 2 (ORF 11)
SOYBEAN CHLOROTIC MOTTLE VIRUS
 99-137


PY38K_NPVAC
HYPOTHETICAL 37.7 KD PROTEIN (ORF2)
AUTOGRAPHA CALIFORNICA NUCLEAR
250-282




POLYHEDROSIS VIRUS (ACMNPV)


PY85K_SSV1
HYPOTHETICAL 85.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
274-312
543-580



(ORF C-792)


PYB13_FOWPM
HYPOTHETICAL BAMHI-ORF13 PROTEIN
FOWLPOX VIRUS (ISOLATE
114-150



(FRAGMENT)
HP-438[MUNICH])


PYDH1_HSVSC
HYPOTHETICAL 28.7 KD PROTEIN IN
HERPESVIRUS SAIMIRI (SUBGROUP
206-244



DHFR 3′REGION (ORF
C/STRAIN 488)


PYDH3_HSVSC
HYPOTHETICAL 9.5 KD PROTEIN IN
HERPESVIRUS SAIMIRI (SUBGROUP
69-97



DHFR 3′REGION (ORF3)
C/STRAIN 488)


PYEC4_EBV
HYPOTHETICAL EC-RF4 PROTEIN
EPSTEIN-BARR VIRUS
34-68




(STRAIN B95-8) (HUMAN HERPESVIRUS 4)


PYIO1_CVBM
HYPOTHETICAL PROTEIN IORF1
BOVINE CORONAVIRUS
 84-122


PYIOR_CVBF
HYPOTHETICAL PROTEIN IN
BOVINE CORONAVIRUS (STRAIN F15)
41-75
137-165



NUCLEOCAPSID ORF (IORF)


PYIOR_CVBM
HYPOTHETICAL PROTEIN IN
BOVINE CORONAVIRUS (STRAIN MEBUS)
41-74
137-165



NUCLEOCAPSID ORF (IORF)


PYIOR_CVTKE
HYPOTHETICAL PROTEIN IN
TURKEY ENTERIC CORONAVIRUS (TCV)
41-74
137-165



NUCLEOCAPSID ORF (IORF)


PYKR2_EBV
HYPOTHETICAL BKRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 67-100




(HUMAN HERPESVIRUS 4)


PYMR2_EBV
BMRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
250-284




(HUMAN HERPESVIRUS 4)


PYOR1_COYMV
HYPOTHETICAL 23 KD PROTEIN (ORF1)
COMMELINA YELLOW MOTTLE VIRUS
 93-130
166-198




(COYMV)


PYOR2_COYMV
HYPOTHETICAL 15 KD PROTEIN (ORF2)
COMMELINA YELLOW MOTTLE VIRUS
23-56




(COYMV)


PYOR3_PVXXC
HYPOTHETICAL 12 KD PROTEIN (ORF3)
POTATO VIRUS X (STRAIN XC) (PVX)
 7-39



(FRAGMENT)


PYOR3_WCMVM
HYPOTHETICAL 13 KD PROTEIN (ORF 3)
WHITE CLOVER MOSAIC VIRUS
63-94




(STRAIN M) (WCMV)


PYOR3_WCMVO
HYPOTHETICAL 13 KD PROTEIN (ORF 3)
WHITE CLOVER MOSAIC VIRUS
64-95




(STRAIN O) (WCMV)


PYOR5_ADEG1
HYPOTHETICAL 31.5 KD PROTEIN (ORF 5)
AVIAN ADENOVIRUS GAL1
237-272


PYORG_TTV1
HYPOTHETICAL 7.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS
 5-34




1 (STRAIN KRA1) (TTV1)


PYORM_TTV1
HYPOTHETICAL 38.6 KD PROTEIN
THERMOPROTEUS TENAX VIRUS
233-263




1 (STRAIN KRA1) (TTV1)


PYORP_TTV1
HYPOTHETICAL 20.2 KD PROTEIN
THERMOPROTEUS TENAX VIRUS
 91-124




1 (STRAIN KRA1) (TTV1)


PYP24_RTBV
HYPOTHETICAL P24 PROTEIN (ORF 1
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
104-133
159-191


PVP24_RTBVP
HYPOTHETICAL P24 PROTEIN (ORF 1)
RICE TUNGRO BACILLIFORM VIRUS
104-133
159-191




(ISOLATE PHILIPPINES) (RTBV)


PYP47_NPVAC
HYPOTHETICAL 43.5 KD PROTEIN IN
AUTOGRAPHA CALIFORNICA NUCLEAR
23-51



P43 3′REGION
POLYHEDROSIS VIRUS (ACMNPV)


PYRF5_HSV6G
HYPOTHETICAL PROTEIN RF5
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
180-216


PYRR2_EBV
HYPOTHETICAL BRRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
13-42




B95-8) (HUMAN HERPESVIRUS 4)


PYSR1_EBV
HYPOTHETICAL BSRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
 92-120




B95-8) (HUMAN HERPESVIRUS 4)


PYTR1_EBV
HYPOTHETICAL BTRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN
306-336




B95-8) (HUMAN HERPESVIRUS 4)


PYVAE_VACCC
HYPOTHETICAL 18.2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
21-53


PYVAL_VACCV
HYPOTHETICAL 9.9 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGE
21-49


PYVBC_VACCC
HYPOTHETICAL 10.8 KD PROTEIN
VACCINIA VIRUS
22-53




(STRAIN COPENHAGEN)


PYVDG_VACCV
HYPOTHETICAL 10.4 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
31-64




VACCINIA VIRUS (STRAIN COPENHAGE


PYVEF_VACCC
HYPOTHETICAL 12.9 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 8-42


PYVFC_VACCC
HYPOTHETICAL 11.6 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 7-35


PZNFP_LYCVA
ZINC FINGER PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS
29-57




VIRUS (STRAIN ARMSTRONG)


PZNFP_LYCVP
ZINC FINGER PROTEIN (FRAGMENT)
LYMPHOCYTIC CHORIOMENINGITIS
 8-32




VIRUS (STRAIN PASTEUR)
















TABLE XV





RESPIRATORY SYNCYTIAL VIRUS DP107 F2 REGION


ANALOG CARBOXY TRUNCATIONS
















X-YTS-Z
(SEQ ID NO:16)


X-YTSV-Z


X-YTSVI-Z


X-YTSVIT-Z


X-YTSVITI-Z


X-YTSVITIE-Z


X-YTSVITIEL-Z


X-YTSVITIELS-Z


X-YTSVITIELSN-Z


X-YTSVITIELSNI-Z


X-YTSVITIELSNIK-Z


X-YTSVITIELSNIKE-Z


X-YTSVITIELSNIKEN-Z


X-YTSVITIELSNIKENK-Z


X-YTSVITIELSNIKENKC-Z


X-YTSVITIELSNIKENKCN-Z


X-YTSVITIELSNIKENKCNG-Z


X-YTSVITIELSNIKENKCNGT-Z


X-YTSVITIELSNIKENKCNGTD-Z


X-YTSVITIELSNIKENKCNGTDA-Z


X-YTSVITIELSNIKENKCNGTDAK-Z


X-YTSVITIELSNIKENKCNGTDAKV-Z


X-YTSVITIELSNIKENKCNGTDAKVK-Z


X-YTSVITIELSNIKENKCNGTDAKVKL-Z


X-YTSVITIELSNIKENKCNGTDAKVKLI-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIK-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQ-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQE-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQEL-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELD-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDK-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKY-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYK-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKN-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNA-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAV-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVT-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTE-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTEL-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQ-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQL-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLL-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLM-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQ-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQS-Z


X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z





The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxycarbonyl (FMOC) group; a macromolecular carrier group. including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE XVI





RESPIRATORY SYNCYTIAL VIRUS F2 DP178/DP107 REGION


ANALOG AMINO TRUNCATIONS















X-QST-Z


X-M Q S T-Z


X-L M Q S T-Z


X-L L M Q S T-Z


X-Q L L M Q S T-Z


X-L Q L L M Q S T-Z


X-E L Q L L M Q S T-Z


X-T E L Q L L M Q S T-Z


X-V T E L Q L L M Q S T-Z


X-A V T E L Q L L M Q S T-Z


X-N A V T E L Q L L M Q S T-Z


X-K N A V T E L Q L L M Q S T-Z


X-Y K N A V T E L Q L L M Q S T-Z


X-K Y K N A V T E L Q L L M Q S T-Z


X-D K Y K N A V T E L Q L L M Q S T-Z


X-L D K Y K N A V T E L Q L L M Q S T-Z


X-E L D K Y K N A V T E L Q L L M Q S T-Z


X-Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-I T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-V I T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-S V I T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z


X-T S V I T I E L S N I K E N K C N G T D A K V K L I K Q E L D K Y K N A V T E L Q L L M Q S T-Z





The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE XVII





RESPIRATORY SYNCYTIAL VIRUS F1 DP178 REGION


ANALOG CARBOXY TRUNCATIONS

















X-FYD-Z



X-FYDP-Z



X-FYDPL-Z



X-FYDPLV-Z



X-FYDPLVF-Z



X-FYDPLVFP-Z



X-FYDPLVFPS-Z



X-FYDPLVFPSD-Z



X-FYDPLVFPSDE-Z



X-FYDPLVFPSDEF-Z



X-FYDPLVFPSDEFD-Z



X-FYDPLVFPSDEFDA-Z



X-FYDPLVFPSDEFDAS-Z



X-FYDPLVFPSDEFDASI-Z



X-FYDPLVFPSDEFDASIS-Z



X-FYDPLVFPSDEFDASISQ-Z



X-FYDPLVFPSDEFDASISQV-Z



X-FYDPLVFPSDEFDASISQVN-Z



X-FYDPLVFPSDEFDASISQVNE-Z



X-FYDPLVFPSDEFDASISQVNEK-Z



X-FYDPLVFPSDEFDASISQVNEKI-Z



X-FYDPLVFPSDEFDASISQVNEKIN-Z



X-FYDPLVFPSDEFDASISQVNEKINQ-Z



X-FYDPLVFPSDEFDASISQVNEKINQS-Z



X-FYDPLVFPSDEFDASISQVNEKINQSL-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLA-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAF-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFI-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIR-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRK-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKS-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSD-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDE-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDEL-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z







The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE XVIII





RESPIRATORY SYNCYTIAL VIRUS F1 DP178 REGION


ANALOG AMINO TRUNCATIONS
















X-DELL-Z



X-SDELL-Z


X-KSDELL-Z


X-RKSDELL-Z


X-IRKSDELL-Z


X-FIRKSDELL-Z


X-AFIRKSDELL-Z


X-LAFIRKSDELL-Z


X-SLAFIRKSDELL-Z


X-QSLAFIRKSDELL-Z


X-NQSLAFIRKSDELL-Z


X-INQSLAFIRKSDELL-Z


X-KINQSLAFIRKSDELL-Z


X-EKINQSLAFIRKSDELL-Z


X-NEKINQSLAFIRKSDELL-Z


X-VNEKINQSLAFIRKSDELL-Z


X-QVNEKINQSLAFIRKSDELL-Z


X-SQVNEKINQSLAFIRKSDELL-Z


X-ISQVNEKINQSLAFIRKSDELL-Z


X-SISQVNEKINQSLAFIRKSDELL-Z


X-ASISQVNEKINQSLAFIRKSDELL-Z


X-DASISQVNEKINQSLAFIRKSDELL-Z


X-FDASISQVNEKINQSLAFIRKSDELL-Z


X-EFDASISQVNEKINQSLAFIRKSDELL-Z


X-DEFDASISQVNEKINQSLAFIRKSDELL-Z


X-SDEFDASISQVNEKINQSLAFIRKSDELL-Z


X-PSDEFDASISQVNEKINQSLAFIRKSDELL-Z


X-FPSDEFDASISQVNEKINQSLAFIRKSDELL-Z


X-VFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z


X-LVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z


X-PLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z


X-DPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z


X-YDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z





The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE XIX





HUMAN PARAINFLUENZA VIRUS 3 F1 REGION


DP178 ANALOG CARBOXY TRUNCATIONS

















X-ITL-Z



X-ITLN-Z



X-ITLNN-Z



X-ITLNNS-Z



X-ITLNNSV-Z



X-ITLNNSVA-Z



X-ITLNNSVAL-Z



X-ITLNNSVALD-Z



X-ITLNNSVALDP-Z



X-ITLNNSVALDPI-Z



X-ITLNNSVALDPID-Z



X-ITLNNSVALDPIDI-Z



X-ITLNNSVALDPIDIS-Z



X-ITLNNSVALDPIDISI-Z



X-ITLNNSVALDPIDISIE-Z



X-ITLNNSVALDPIDISIEL-Z



X-ITLNNSVALDPIDISIELN-Z



X-ITLNNSVALDPIDISIELNK-Z



X-ITLNNSVALDPIDISIELNKA-Z



X-ITLNNSVALDPIDISIELNKAK-Z



X-ITLNNSVALDPIDISIELNKAKS-Z



X-ITLNNSVALDPIDISIELNKAKSD-Z



X-ITLNNSVALDPIDISIELNKAKSDL-Z



X-ITLNNSVALDPIDISIELNKAKSDLE-Z



X-ITLNNSVALDPIDISIELNKAKSDLEE-Z



X-ITLNNSVALDPIDISIELNKAKSDLEES-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESK-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKE-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEW-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEWI-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIR-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIRR-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z







The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE XX





HUMAN PARAINFLUENZA VIRUS 3 F1 REGION


DP178 ANALOG AMINO TRUNCATIONS
















X-RRS-Z



X-IRRS-Z


X-WIRRS-Z


X-EWIRRS-Z


X-KEWIRRS-Z


X-SKEWIRRS-Z


X-ESKEWIRRS-Z


X-EESKEWIRRS-Z


X-LEESKEWIRRS-Z


X-DLEESKEWIRRS-Z


X-SDLEESKEWIRRS-Z


X-KSDLEESKEWIRRS-Z


X-AKSDLEESKEWIRRS-Z


X-KAKSDLEESKEWIRRS-Z


X-NKAKSDLEESKEWIRRS-Z


X-LNKAKSDLEESKEWIRRS-Z


X-ELNKAKSDLEESKEWIRRS-Z


X-IELNKAKSDLEESKEWIRRS-Z


X-SIELNKAKSDLEESKEWIRRS-Z


X-ISIELNKAKSDLEESKEWIRRS-Z


X-DISIELNKAKSDLEESKEWIRRS-Z


X-IDISIELNKAKSDLEESKEWIRRS-Z


X-PIDISIELNKAKSDLEESKEWIRRS-Z


X-DPIDISIELNKAKSDLEESKEWIRRS-Z


X-LDPIDISIELNKAKSDLEESKEWIRRS-Z


X-ALDPIDISIELNKAKSDLEESKEWIRRS-Z


X-VALDPIDISIELNKAKSDLEESKEWIRRS-Z


X-SVALDPIDISIELNKAKSDLEESKEWIRRS-Z


X-NSVALDPIDISIELNKAKSDLEESKEWIRRS-Z


X-NNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z


X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z


X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z





The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE XXI





HUMAN PARAINFLUENZA VIRUS 3 F1 REGION


DP107 ANALOG CARBOXY TRUNCATIONS

















X-ALG-Z



X-ALGV-Z



X-ALGVA-Z



X-ALGVAT-Z



X-ALGVATS-Z



X-ALGVATSA-Z



X-ALGVATSAQ-Z



X-ALGVATSAQI-Z



X-ALGVATSAQIT-Z



X-ALGVATSAQITA-Z



X-ALGVATSAQITAA-Z



X-ALGVATSAQITAAV-Z



X-ALGVATSAQITAAVA-Z



X-ALGVATSAQITAAVAL-Z



X-ALGVATSAQITAAVALV-Z



X-ALGVATSAQITAAVALVE-Z



X-ALGVATSAQITAAVALVEA-Z



X-ALGVATSAQITAAVALVEAK-Z



X-ALGVATSAQITAAVALVEAKQ-Z



X-ALGVATSAQITAAVALVEAKQA-Z



X-ALGVATSAQITAAVALVEAKQAR-Z



X-ALGVATSAQITAAVALVEAKQARS-Z



X-ALGVATSAQITAAVALVEAKQARSD-Z



X-ALGVATSAQITAAVALVEAKQARSDI-Z



X-ALGVATSAQITAAVALVEAKQARSDIE-Z



X-ALGVATSAQITAAVALVEAKQARSDIEK-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKL-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLK-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLKE-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLKEA-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLKEAI-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLKEAIR-Z







The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE XXII





HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP107


ANALOG AMINO TRUNCATIONS
















X-IRD-Z



X-AIRD-Z


X-EAIRD-Z


X-KEAIRD-Z


X-LKEAIRD-Z


X-KLKEAIRD-Z


X-EKLKEAIRD-Z


X-IEKLKEAIRD-Z


X-KIEKLKEAIRD-Z


X-SKIEKLKEAIRD-Z


X-DSKIEKLKEAIRD-Z


X-ARSDKIEKLKEAIRD-Z


X-QARSDIEKLKEAIRD-Z


X-KQARSDIEKLKEAIRD-Z


X-AKQARSDIEKLKEAIRD-Z


X-EAKQARSDIEKLKEAIRD-Z


X-VEAKQARSDIEKLKEAIRD-Z


X-LVEAKQARSDIEKLKEAIRD-Z


X-ALVEAKQARSDIEKLKEAIRD-Z


X-VALVEAKQARSDIEKLKEAIRD-Z


X-AVALVEAKQARSDIEKLKEAIRD-Z


X-AAVALVEAKQARSDIEKLKEAIRD-Z


X-TAAVALVEAKQARSDIEKLKEAIRD-Z


X-ITAAVALVEAKQARSDIEKLKEAIRD-Z


X-QITAAVALVEAKQARSDIEKLKEAIRD-Z


X-AQITAAVALVEAKQARSDIEKLKEAIRD-Z


X-SAQITAAVALVEAKQARSDIEKLKEAIRD-Z


X-TSAQITAAVALVEAKQARSDIEKLKEAIRD-Z


X-ATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z


X-VATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z


X-GVATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z


X-LGVATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z





The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE XXIII





REPRESENTATIVE DP107/DP178 ANALOG


ANTIVIRAL PEPTIDES

















Anti-Respiratory syncytial virus peptides



X-TSVITIELSNIKENKCNGTDAKVKLIKQELDKYKN-Z



X-SVITIELSNIKENKCNGTDAKVKLIKQELDKYKNA-Z



X-VITIELSNIKENKCNGTDAKVKLIKQELDKYKNAV-Z



X-VAVSKVLHLEGEVNKIALLSTNKAVVSLSNGVS-Z



X-AVSKVLHLEGEVNKIALLSTNKAVVSLSNGVSV-Z



X-VSKVLHLEGEVNKIALLSTNKAVVSLSNGVSVL-Z



X-SKVLHLEGEVNKIALLSTNKAVVSLSNGVSVLT-Z



X-KVLHLEGEVNKIALLSTNKAVVSLSNGVSVLTS-Z



X-LEGEVNKIALLSTNKAVVSLSNGVSVLTSKVLD-Z



X-GEVNKIALLSTNKAVVSLSNGVSVLTSKVLDLK-Z



X-EVNKIALLSTNKAVVSLSNGVSVLTSKVLDLKN-Z



X-VNKIALLSTNKAVVSLSNGVSVLTSKVLDLKNY-Z



X-NKIALLSTNKAVVSLSNGVSVLTSKVLDLKNYI-Z



X-KIALLSTNKAVVSLSNGVSVLTSKVLDLKNYID-Z



X-IALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK-Z



X-ALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQ-Z



X-VAVSKVLHLEGEVNKIALLSTNKAVVSLSNGVS-Z



X-AVSKVLHLEGEVNKIALLSTNKAVVSLSNGVSV-Z



X-VSKVLHLEGEVNKIALLSTNKAVVSLSNGVSVL-Z



X-SKVLHLEGEVNKIALLSTNKAVVSLSNGVSVLT-Z



X-KVLHLEGEVNKIALLSTNKAVVSLSNGVSVLTS-Z



X-LEGEVNKIALLSTNKAVVSLSNGVSVLTSKVLD-Z



X-GEVNKIALLSTNKAVVSLSNGVSVLTSKVLDLK-Z



X-EVNKIALLSTNKAVVSLSNGVSVLTSKVLDLKN-Z



X-VNKIALLSTNKAVVSLSNGVSVLTSKVLDLKNY-Z



X-NKIALLSTNKAVVSLSNGVSVLTSKVLDLKNYI-Z



X-KIALLSTNKAVVSLSNGVSVLTSKVLDLKNYID-Z



X-IALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK-Z



X-ALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQ-Z



Anti-human parainfluenza virus 3 peptides



X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRSN-Z



X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRSNQ-Z



X-NNSVALDPIDISIELNKAKSDLEESKEWIRRSNQK-Z



X-NSVALDPIDISIELNKAKSDLEESKEWIRRSNQKL-Z



X-SVALDPIDISIELNKAKSDLEESKEWIRRSNQKLD-Z



X-VALDPIDISIELNKAKSDLEESKEWIRRSNQKLDS-Z



X-ALDPIDISIELNKAKSDLEESKEWIRRSNQKLDSI-Z



X-LDPIDISIELNKAKSDLEESKEWIRRSNQKLDSIG-Z



X-DPIDISIELNKAKSDLEESKEWIRRSNQKLDSIGN-Z



X-PIDISIELNKAKSDLEESKEWIRRSNQKLDSIGNW-Z



X-IDISIELNKAKSDLEESKEWIRRSNQKLDSIGNWH-Z



X-DISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQ-Z



X-ISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQS-Z



X-SIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSS-Z



X-IELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSST-Z



X-ELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSSTT-Z



X-TAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQS-Z



X-AVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSI-Z



X-LVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNL-Z



X-VEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLI-Z



X-EAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIV-Z



X-AKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVA-Z



X-KQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAI-Z



X-QARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-Z



X-ARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKS-Z



X-RSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSV-Z



X-SDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQ-Z



X-KLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVN-Z



X-LKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNK-Z



X-AIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKEIV-Z



Anti-simian immunodeficiency virus peptides



X-WQEWERKVDFLEENITALLEEAQIQQEKNMYELQK-Z



X-QEWERKVDFLEENITALLEEAQIQQEKNMYELQKL-Z



X-EWERKVDFLEENITALLEEAQIQQEKNMYELQKLN-Z



X-WERKVDFLEENITALLEEAQIQQEKNMYELQKLNS-Z



X-ERKVDFLEENITALLEEAQIQQEKNMYELQKLNSW-Z



X-RKVDFLEENITALLEEAQIQQEKNMYELQKLNSWD-Z



X-KVDFLEENITALLEEAQIQQEKNMYELQKLNSWDV-Z



X-VDFLEENITALLEEAQIQQEKNMYELQKLNSWDVF-Z



X-DFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG-Z



X-FLEENITALLEEAQIQQEKNMYELQKLNSWDVFGN-Z



Anti-measles virus peptides



X-LHRIDLGPPISLERLDVGTNLGNAIAKLEAKELL-Z



X-HRIDLGPPISLERLDVGTNLGNAIAKLEAKELLE-Z



X-RIDLGPPISLERLDVGTNLGNAIAKLEAKELLES-Z



X-IDLGPPISLERLDVGTNLGNAIAKLEAKELLESS-Z



X-DLGPPISLERLDVGTNLGNAIAKLEAKELLESSD-Z



X-LGPPISLERLDVGTNLGNAIAKLEAKELLESSDQ-Z



X-GPPISLERLDVGTNLGNAIAKLEAKELLESSDQI-Z



X-PPISLERLDVGTNLGNAIAKLEAKELLESSDQIL-Z



X-PISLERLDVGTNLGNAIAKLEAKELLESSDQILR-Z



X-SLERLDVGTNLGNAIAKLEAKELLESSDQILRSM-Z



X-LERLDVGTNLGNAIAKLEAKELLESSDQILRSMK-Z







The one letter amino acid code is used.







Additionally,


“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.


5.4. Synthesis of Peptides

The peptides of the invention may be synthesized or prepared by techniques well known in the art. See, for example, Creighton, 1983, Proteins: Structures and Molecular Principles, W. H. Freeman and Co., NY, which is incorporated herein by reference in its entirety. Short peptides, for example, can be synthesized on a solid support or in solution. Longer peptides may be made using recombinant DNA techniques. Here, the nucleotide sequences encoding the peptides of the invention may be synthesized, and/or cloned, and expressed according to techniques well known to those of ordinary skill in the art. See, for example, Sambrook, et al., 1989, Molecular Cloning, A Laboratory Manual, Vols. 1-3, Cold Spring Harbor Press, NY.


The peptides of the invention may alternatively be synthesized such that one or more of the bonds which link the amino acid residues of the peptides are non-peptide bonds. These alternative non-peptide bonds may be formed by utilizing reactions well known to those in the art, and may include, but are not limited to imino, ester, hydrazide, semicarbazide, and azo bonds, to name but a few. In yet another embodiment of the invention, peptides comprising the sequences described above may be synthesized with additional chemical groups present at their amino and/or carboxy termini, such that, for example, the stability, bioavailability, and/or inhibitory activity of the peptides is enhanced. For example, hydrophobic groups such as carbobenzoxyl, dansyl, or t-butyloxycarbonyl groups, may be added to the peptides' amino termini. Likewise, an acetyl group or a 9-fluorenylmethoxy-carbonyl group may be placed at the peptides' amino termini. (See “X” in Tables I to IV, above.) Additionally, the hydrophobic group, t-butyloxycarbonyl, or an amido group may be added to the peptides' carboxy termini. (See “Z” in Tables I to IV, above.)


Further, the peptides of the invention may be synthesized such that their steric configuration is altered. For example, the D-isomer of one or more of the amino acid residues of the peptide may be used, rather than the usual L-isomer.


Still further, at least one of the amino acid residues of the peptides of the invention may be substituted by one of the well known non-naturally occurring amino acid residues. Alterations such as these may serve to increase the stability, bioavailability and/or inhibitory action of the peptides of the invention.


Any of the peptides described above may, additionally, have a macromolecular carrier group covalently attached to their amino and/or carboxy termini. Such macromolecular carrier groups may include, for example, lipid-fatty acid conjugates, polyethylene glycol, carbohydrates or additional peptides. “X”, in Tables I to IV, above, may therefore additionally represent any of the above macromolecular carrier groups covalently attached to the amino terminus of a peptide, with an additional peptide group being preferred. Likewise, “Z”, in Tables I to IV, may additionally represent any of the macromolecular carrier groups described above.


5.5. Assays for Anti-membrane Fusion Activity

Described herein, are methods for ability of a compound, such as the peptides of the invention, to inhibit membrane fusion events. Specifically, assays for cell fusion events are described in Section 5.5.1, below, and assays for antiviral activity are described in Section 5.5.2, below.


5.5.1 Assays for Cell Fusion Events

Assays for cell fusion events are well known to those of skill in the art, and may be used in conjunction, for example, with the peptides of the invention to test the peptides' antifusogenic capabilities.


Cell fusion assays are generally performed in vitro. Such an assay may comprise culturing cells which, in the absence of any treatment would undergo an observable level of syncytial formation. For example, uninfected cells may be incubated in the presence of cells chronically infected with a virus that induces cell fusion. Such viruses may include, but are not limited to, HIV, SIV, or respiratory syncytial virus.


For the assay, cells are incubated in the presence of a peptide to be assayed. For each peptide, a range of peptide concentrations may be tested. This range should include a control culture wherein no peptide has been added.


Standard conditions for culturing cells, well known to those of ordinary skill in the art, are used. After incubation for an appropriate period (24 hours at 37° C., for example) the culture is examined microscopically for the presence of multinucleated giant cells, which are indicative of cell fusion and syncytial formation. Well known stains, such as crystal violet stain, may be used to facilitate the visualization of syncytial formation.


5.5.2 Assays for Antiviral Activity

The antiviral activity exhibited by the peptides of the invention may be measured, for example, by easily performed in vitro assays, such as those described below, which can test the peptides' ability to inhibit syncytia formation, or their ability to inhibit infection by cell-free virus. Using these assays, such parameters as the relative antiviral activity of the peptides, exhibit against a given strain of virus and/or the strain specific inhibitory activity of the peptide can be determined.


A cell fusion assay may be utilized to test the peptides' ability to inhibit viral-induced, such as HIV-induced, syncytia formation in vitro. Such an assay may comprise culturing uninfected cells in the presence of cells chronically infected with a syncytial-inducing virus and a peptide to be assayed. For each peptide, a range of peptide concentrations may be tested. This range should include a control culture wherein no peptide has been added. Standard conditions for culturing, well known to those of ordinary skill in the art, are used. After incubation for an appropriate period (24 hours at 37° C., for example) the culture is examined microscopically for the presence of multinucleated giant cells, which are indicative of cell fusion and, syncytia formation. Well known stains, such as crystal violet stain, may be used to facilitate syncytial visualization. Taking HIV as an example, such an assay would comprise CD-4+ cells (such as Molt or CEM cells, for example) cultured in the presence of chronically HIV-infected cells and a peptide to be assayed.


Other well known characteristics of viral infection may also be assayed to test a peptide's antiviral capabilities. Once again taking HIV as an example, a reverse transcriptase (RT) assay may be utilized to test the peptides' ability to inhibit infection of CD-4+ cells by cell-free HIV. Such an assay may comprise culturing an appropriate concentration (i.e., TCID50) of virus and CD-4+ cells in the presence of the peptide to be tested. Culture conditions well known to those in the art are used. As above, a range of peptide concentrations may be used, in addition to a control culture wherein no peptide has been added. After incubation for an appropriate period (e.g., 7 days) of culturing, a cell-free supernatant is prepared, using standard procedures, and tested for the present of RT activity as a measure of successful infection. The RT activity may be tested using standard techniques such as those described by, for example, Goff et al. (Goff, S. et al., 1981, J. Virol. 38:239-248) and/or Willey et al. (Willey, R. et al., 1988, J. Virol. 62:139-147). These references are incorporated herein by reference in their entirety.


Standard methods which are well-known to those of skill in the art may be utilized for assaying non-retroviral activity. See, for example, Pringle et al. (Pringle, C. R. et al., 1985, J. Medical Virology 17:377-386) for a discussion of respiratory syncytial virus and parainfluenza virus activity assay techniques. Further, see, for example, “Zinsser Microbiology”, 1988, Joklik, W. K. et al., eds., Appleton & Lange, Norwalk, Conn., 19th ed., for a general review of such techniques. These references are incorporated by reference herein in their entirety. In addition, the Examples presented below, in Sections 17, 18, 26 and 27 each provide additional assays for the testing of a compound's antiviral capability.


In vivo assays may also be utilized to test, for example, the antiviral activity of the peptides of the invention. To test for anti-HIV activity, for example, the in vivo model described in Barnett et al. (Barnett, S. W. et al., 1994, Science 266:642-646) may be used.


Additionally, anti-RSV activity can be assayed in vivo via well known mouse models. For example, RSV can be administered intranasally to mice of various inbred strains. Virus replicates in lungs of all strains, but the highest titers are obtained in P/N, C57L/N and DBA/2N mice. Infection of BALB/c mice produces an asymptomatic bronchiolitis characterized by lymphocytic infiltrates and pulmonary virus titers of 104 to 105 pfu/g of lung tissue (Taylor, G. et al., 1984, Infect. Immun. 43:649-655).


Cotton rat models of RSV are also well known. Virus replicates to high titer in the nose and lungs of the cotton rat but produces few if any signs of inflammation.


5.6. Uses of the Peptides of the Invention

The peptides of the invention may be utilized as antifusogenic or antiviral compounds, or as compounds which modulate intracellular processes involving coiled coil peptide structures. Further, such peptides may be used to identify agents which exhibit antifusogenic, antiviral or intracellular modulatory activity. Still further, the peptides of the invention may be utilized as organism or viral type/subtype-specific diagnostic tools.


The antifusogenic capability of the peptides of the invention may additionally be utilized to inhibit or treat/ameliorate symptoms caused by processes involving membrane fusion events. Such events may include, for example, virus transmission via cell-cell fusion, abnormal neurotransmitter exchange via cell-fusion, and sperm-egg fusion. Further, the peptides of the invention may be used to inhibit free viral, such as retroviral, particularly HIV, transmission to uninfected cells wherein such viral infection involves membrane fusion events or involves fusion of a viral structure with a cell membrane. Among the intracellular disorders involving coiled coil peptides structures which may be ameliorated by the peptides of the invention are disorders involving, for example, bacterial toxins.


With respect to antiviral activity, the viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to all strains of the viruses listed above, in Tables V through VII, and IX through XIV.


These viruses include, for example, human retroviruses, particularly HIV-1 and HIV-2 and the human T-lymphocyte viruses (HTLV-I and II). The non-human retroviruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to bovine leukosis virus, feline sarcoma and leukemia viruses, simian immunodeficiency, sarcoma and leukemia viruses, and sheep progress pneumonia viruses.


Non retroviral viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to human respiratory syncytial virus, canine distemper virus, newcastle disease virus, human parainfluenza virus, influenza viruses, measles viruses, Epstein-Barr viruses, hepatitis B viruses, and simian Mason-Pfizer viruses.


Non enveloped viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to picornaviruses such as polio viruses, hepatitis A virus, enterovirus, echoviruses and coxsackie viruses, papovaviruses such as papilloma virus, parvoviruses, adenoviruses and reoviruses.


As discussed more fully, below, in Section 5.5.1 and in the Example presented, below, in Section 8, DP107, DP178, DP107 analog and DP178 analog peptides form non-covalent protein-protein interactions which are required for normal activity of the virus. Thus, the peptides of the invention may also be utilized as components in assays for the identification of compounds that interfere with such protein-protein interactions and may, therefore, act as antiviral agents. These assays are discussed, below, in Section 5.5.1.


As demonstrated in the Example presented below in Section 6, the antiviral activity of the peptides of the invention may show a pronounced type and subtype specificity, i.e., specific peptides may be effective in inhibiting the activity of only specific viruses. This feature of the invention presents many advantages. One such advantage, for example, lies in the field of diagnostics, wherein one can use the antiviral specificity of the peptide of the invention to ascertain the identity of a viral isolate. With respect to HIV, one may easily determine whether a viral isolate consists of an HIV-1 or HIV-2 strain. For example, uninfected CD-4+ cells may be co-infected with an isolate which has been identified as containing HIV the DP178 (SEQ ID:1) peptide, after which the retroviral activity of cell supernatants may be assayed, using, for example, the techniques described above in Section 5.2. Those isolates whose retroviral activity is completely or nearly completely inhibited contain HIV-1. Those isolates whose viral activity is unchanged or only reduced by a small amount, may be considered to not contain HIV-1. Such an isolate may then be treated with one or more of the other DP178 peptides of the invention, and subsequently be tested for its viral activity in order to determine the identify of the viral isolate. The DP107 and DP178 analogs of the invention may also be utilized in a diagnostic capacity specific to the type and subtype of virus or organism in which the specific peptide sequence is found. A diagnostic procedure as described, above, for DP178, may be used in conjunction with the DP107/DP178 analog of interest.


5.5.1. Screening Assays

As demonstrated in the Example presented in Section 8, below, DP107 and DP178 portions of the TM protein gp41 form non-covalent protein-protein interactions. As is also demonstrated, the maintenance of such interactions is necessary for normal viral infectivity. Thus, compounds which bind DP107, bind DP178, and/or act to disrupt normal DP107/DP178 protein-protein interactions may act as antifusogenic, antiviral or cellular modulatory agents. Described below are assays for the identification of such compounds. Note that, while, for ease and clarity of discussion, DP107 and DP178 peptides will be used as components of the assays described, but it is to be understood that any of the DP107 analog or DP178 analog peptides described, above, in Sections 5.1 through 5.3 may also be utilized as part of these screens for compounds.


Compounds which may be tested for an ability to bind DP107, DP178, and/or disrupt DP107/DP178 interactions, and which therefore, potentially represent antifusogenic, antiviral or intracellular modulatory compounds, include, but are not limited to, peptides made of D- and/or L-configuration amino acids (in, for example, the form of random peptide libraries; see Lam, K. S. et al., 1991, Nature 354:82-84), phosphopeptides (in, for example, the form of random or partially degenerate, directed phosphopeptide libraries; see, for example, Songyang, Z. et al., 1993, Cell 72:767-778), antibodies, and small organic or inorganic molecules. Synthetic compounds, natural products, and other sources of potentially effective materials may be screened in a variety of ways, as described in this Section.


The compounds, antibodies, or other molecules identified may be tested, for example, for an ability to inhibit cell fusion or viral activity, utilizing, for example, assays such as those described, above, in Section 5.5.


Among the peptides which may be tested are soluble peptides comprising DP107 and/or DP178 domains, and peptides comprising DP107 and/or DP178 domains having one or more mutations within one or both of the domains, such as the M41-P peptide described, below, in the Example presented in Section 8, which contains a isoleucine to proline mutation within the DP178 sequence.


In one embodiment of such screening methods is a method for identifying a compound to be tested for antiviral ability comprising:

    • (a) exposing at least one compound to a peptide comprising a DP107 peptide for a time sufficient to allow binding of the compound to the DP107 peptide;
    • (b) removing non-bound compounds; and
    • (c) determining the presence of the compound bound to the DP107 peptide, thereby identifying an agent to be tested for antiviral ability.


In a second embodiment of such screening methods is a method for identifying a compound to be tested for antiviral ability comprising:

    • (a) exposing at least one compound to a peptide comprising a DP178 peptide for a time sufficient to allow binding of the compound to the DP178 peptide;
    • (b) removing non-bound compounds; and
    • (c) determining the presence of the compound bound to the DP178 peptide, thereby identifying an agent to be tested for antiviral ability.


One method utilizing these types of approaches that may be pursued in the isolation of such DP107-binding or DP178-binding compounds is an assay which would include the attachment of either the DP107 or the DP178 peptide to a solid matrix, such as, for example, agarose or plastic beads, microtiter plate wells, petri dishes, or membranes composed of, for example, nylon or nitrocellulose. In such an assay system, either the DP107 or DP178 protein may be anchored onto a solid surface, and the compound, or test substance, which is not anchored, is labeled, either directly or indirectly. In practice, microtiter plates are conveniently utilized. The anchored component may be immobilized by non-covalent or covalent attachments. Non-covalent attachment may be accomplished simply by coating the solid surface with a solution of the protein and drying.


Alternatively, an immobilized antibody, preferably a monoclonal antibody, specific for the protein may be used to anchor the protein to the solid surface. The surfaces may be prepared in advance and stored.


In order to conduct the assay, the labeled compound is added to the coated surface containing the anchored DP107 or DP178 peptide. After the reaction is complete, unreacted components are removed (e.g., by washing) under conditions such that any complexes formed will remain immobilized on the solid surface. The detection of complexes anchored on the solid surface can be accomplished in a number of ways. Where the compound is pre-labeled, the detection of label immobilized on the surface indicates that complexes were formed. Where the labeled component is not pre-labeled, an indirect label can be used to detect complexes anchored on the surface; e.g., using a labeled antibody specific for the compound (the antibody, in turn, may be directly labeled or indirectly labeled with a labeled anti-Ig antibody).


Alternatively, such an assay can be conducted in a liquid phase, the reaction products separated from unreacted components, and complexes detected; e.g., using an immobilized antibody specific for DP107 or DP178, whichever is appropriate for the given assay, or ab antibody specific for the compound, i.e., the test substance, in order to anchor any complexes formed in solution, and a labeled antibody specific for the other member of the complex to detect anchored complexes.


By utilizing procedures such as this, large numbers of types of molecules may be simultaneously screened for DP107 or DP178-binding capability, and thus potential antiviral activity.


Further, compounds may be screened for an ability to inhibit the formation of or, alternatively, disrupt DP107/DP178 complexes. Such compounds may then be tested for antifusogenic, antiviral or intercellular modulatory capability. For ease of description, DP107 and DP178 will be referred to as “binding partners.” Compounds that disrupt such interactions may exhibit antiviral activity. Such compounds may include, but are not limited to molecules such as antibodies, peptides, and the like described above.


The basic principle of the assay systems used to identify compounds that interfere with the interaction between the DP107 and DP178 peptides involves preparing a reaction mixture containing peptides under conditions and for a time sufficient to allow the two peptides to interact and bind, thus forming a complex. In order to test a compound for disruptive activity, the reaction is conducted in the presence and absence of the test compound, i.e., the test compound may be initially included in the reaction mixture, or added at a time subsequent to the addition of one of the binding partners; controls are incubated-without the test compound or with a placebo. The formation of any complexes between the binding partners is then detected. The formation of a complex in the control reaction, but not in the reaction mixture containing the test compound indicates that the compound interferes with the interaction of the DP107 and DP178 peptides.


The assay for compounds that interfere with the interaction of the binding partners can be conducted in a heterogeneous or homogeneous format. Heterogeneous assays involve anchoring one of the binding partners onto a solid phase and detecting complexes anchored on the solid phase at the end of the reaction. In homogeneous assays, the entire reaction is carried out in a liquid phase. In either approach, the order of addition of reactants can be varied to obtain different information about the compounds being tested. For example, test compounds that interfere with the interaction between the binding partners, e.g., by competition, can be identified by conducting the reaction in the presence of the test substance; i.e., by adding the test substance to the reaction mixture prior to or simultaneously with the binding partners. On the other hand, test compounds that disrupt preformed complexes, e.g. compounds with higher binding constants that displace one of the binding partners from the complex, can be tested by adding the test compound to the reaction mixture after complexes have been formed. The various formats are described briefly below.


In a heterogeneous assay system, one binding partner, e.g., either the DP107 or DP178 peptide, is anchored onto a solid surface, and its binding partner, which is not anchored, is labeled, either directly or indirectly. In practice, microtiter plates are conveniently utilized. The anchored species may be immobilized by non-covalent or covalent attachments. Non-covalent attachment may be accomplished simply by coating the solid surface with a solution of the protein and drying. Alternatively, an immobilized antibody specific for the protein may be used to anchor the protein to the solid surface. The surfaces may be prepared in advance and stored.


In order to conduct the assay, the binding partner of the immobilized species is added to the coated surface with or without the test compound. After the reaction is complete, unreacted components are removed (e.g., by washing) and any complexes formed will remain immobilized on the solid surface. The detection of complexes anchored on the solid surface can be accomplished in a number of ways. Where the binding partner was pre-labeled, the detection of label immobilized on the surface indicates that complexes were formed. Where the binding partner is not pre-labeled, an indirect label can be used to detect complexes anchored on the surface; e.g., using a labeled antibody specific for the binding partner (the antibody, in turn, may be directly labeled or indirectly labeled with a labeled anti-Ig antibody). Depending upon the order of addition of reaction components, test compounds which inhibit complex formation or which disrupt preformed complexes can be detected.


Alternatively, the reaction can be conducted in a liquid phase in the presence or absence of the test compound, the reaction products separated from unreacted components, and complexes detected; e.g., using an immobilized antibody specific for one binding partner to anchor any complexes formed in solution, and a labeled antibody specific for the other binding partner to detect anchored complexes. Again, depending upon the order of addition of reactants to the liquid phase, test compounds which inhibit complex or which disrupt preformed complexes can be identified.


In an alternate embodiment of the invention, a homogeneous assay can be used. In this approach, a preformed complex of the DP107 and DP178 peptides is prepared in which one of the binding partners is labeled, but the signal generated by the label is quenched due to complex formation (see, e.g., U.S. Pat. No. 4,109,496 by Rubenstein which utilizes this approach for immunoassays). The addition of a test substance that competes with and displaces one of the binding partners from the preformed complex will result in the generation of a signal above background. In this way, test substances which disrupt DP-107/DP-178 protein-protein interaction can be identified.


In an alternative screening assay, test compounds may be assayed for the their ability to disrupt a DP178/DP107 interaction, as measured immunometrically using an antibody specifically reactive to a DP107/DP178 complex (i.e., an antibody that recognizes neither DP107 nor DP178 individually). Such an assay acts as a competition assay, and is based on techniques well known to those of skill in the art.


The above competition assay may be described, by way of example, and not by way of limitation, by using the DP178 and M41Δ178 peptides and by assaying test compounds for the disruption of the complexes formed by these two peptides by immunometrically visualizing DP178/M41Δ178 complexes via the human recombinant Fab, Fab-d, as described, below, in the Example presented in Section 8. M41Δ178 is a maltose binding fusion protein containing a gp41 region having its DP178 domain deleted, and is described, below, in the Example presented in Section 8.


Utilizing such an assay, M41Δ178 may be immobilized onto solid supports such as microtiter wells. A series of dilutions of a test compound may then be added to each M41Δ178-containing well in the presence of a constant concentration of DP-178 peptide. After incubation, at, for example, room temperature for one hour, unbound DP-178 and test compound are removed from the wells and wells are then incubated with the DP178/M41Δ178-specific Fab-d antibody. After incubation and washing, unbound Fab-d is removed from the plates and bound Fab-d is quantitated. A no-inhibitor control should also be conducted. Test compounds showing an ability to disrupt DP178/M41Δ178 complex formation are identified by their concentration-dependent decrease in the level of Fab-d binding.


A variation of such an assay may be utilized to perform a rapid, high-throughput binding assay which is capable of directly measuring DP178 binding to M41Δ178 for the determination of binding constants of the ligand of inhibitory constants for competitors of DP178 binding.


Such an assay takes advantage of accepted radioligand and receptor binding principles. (See, for example, Yamamura, H. I. et al., 1985, “Neurotransmitter Receptor Binding”, 2nd ed., Raven Press, NY.) As above, M41Δ178 is immobilized onto a solid support such as a microtiter well. DP178 binding to M41Δ178 is then quantitated by measuring the fraction of DP178 that is bound as 125I-DP178 and calculating the total amount bound using a value for specific activity (dpm/μg peptide) determined for each labeled DP178 preparation. Specific binding to M41Δ178 is defined as the difference of the binding of the labeled DP178 preparation in the microtiter wells (totals) and the binding in identical wells containing, in addition, excess unlabeled DP178 (nonspecifics).


5.5 Pharmaceutical Formations, Dosages and Modes of Administration

The peptides of the invention may be administered using techniques well known to those in the art. Preferably, agents are formulated and administered systemically. Techniques for formulation and administration may be found in “Remington's Pharmaceutical Sciences”, 18th ed., 1990, Mack Publishing Co., Easton, Pa. Suitable routes may include oral, rectal, transmucosal, or intestinal administration; parenteral delivery, including intramuscular, subcutaneous, intramedullary injections, as well as, intrathecal, direct intraventricular, intravenous, intraperitoneal, intranasal, or intraocular injections, just to name a few. For injection, the agents of the invention may be formulated in aqueous solutions, preferably in physiologically compatible buffers such as Hanks' solution, Ringer's solution, or physiological saline buffer. For such transmucosal administration, penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are generally known in the art.


In instances wherein intracellular administration of the peptides of the invention or other inhibitory agents is preferred, techniques well known to those of ordinary skill in the art may be utilized. For example, such agents may be encapsulated into liposomes, then administered as described above. Liposomes are spherical lipid bilayers with aqueous interiors. All molecules present in an aqueous solution at the time of liposome formation are incorporated into the aqueous interior. The liposomal contents are both protected from the external microenvironment and, because liposomes fuse with cell membranes, are effectively delivered into the cell cytoplasm. Additionally, due to their hydrophobicity, when small molecules are to be administered, direct intracellular administration may be achieved.


Nucleotide sequences encoding the peptides of the invention which are to be intracellularly administered may be expressed in cells of interest, using techniques well known to those of skill in the art. For example, expression vectors derived from viruses such as retroviruses, vaccinia viruses, adeno-associated viruses, herpes viruses, or bovine papilloma viruses, may be used for delivery and expression of such nucleotide sequences into the targeted cell population. Methods for the construction of such vectors and expression constructs are well known. See, for example, Sambrook et al., 1989, Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Press, Cold Spring Harbor N.Y., and Ausubel et al., 1989, Current Protocols in Molecular Biology, Greene Publishing Associates and Wiley Interscience, NY.


With respect to HIV, peptides of the invention, particularly DP107 and DP178, may be used as therapeutics in the treatment of AIDS. In addition, the peptides may be used as prophylactic measures in previously uninfected individuals after acute exposure to an HIV virus. Examples of such prophylactic use of the peptides may include, but are not limited to, prevention of virus transmission from mother to infant and other settings where the likelihood of HIV transmission exists, such as, for example, accidents in health care settings wherein workers are exposed to HIV-containing blood products. The successful use of such treatments do not rely upon the generation of a host immune response directed against such peptides.


Effective dosages of the peptides of the invention to be administered may be determined through procedures well known to those in the art which address such parameters as biological half-life, bioavailability, and toxicity. Given the data presented below in Section 6, DP178, for example, may prove efficacious in vivo at doses required to achieve circulating levels of about 1 to about 10 ng per ml of peptide.


A therapeutically effective dose refers to that amount of the compound sufficient to result in amelioration of symptoms or a prolongation of survival in a patient. Toxicity and therapeutic efficacy of such compounds can be determined by standard pharmaceutical procedures in cell cultures or experimental animals, e.g., for determining the LD50 (the dose lethal to 50% of the population) and the ED50 (the dose therapeutically effective in 50% of the population). The dose ratio between toxic and therapeutic effects is the therapeutic index and it can be expressed as the ratio LD50/ED50. Compounds which exhibit large therapeutic indices are preferred. The data obtained from these cell culture assays and animal studies can be used in formulating a range of dosage for use in humans. The dosage of such compounds lies preferably within a range of circulating concentrations that include the ED50 with little or no toxicity. The dosage may vary within this range depending upon the dosage form employed and the route of administration utilized. For any compound used in the method of the invention, the therapeutically effective dose can be estimated initially from cell culture assays. A dose may be formulated in animal models to achieve a circulating plasma concentration range that includes the IC50 (e.g., the concentration of the test compound which achieves a half-maximal inhibition of the fusogenic event, such as a half-maximal inhibition of viral infection relative to the amount of the event in the absence of the test compound) as determined in cell culture. Such information can be used to more accurately determine useful doses in humans. Levels in plasma may be measured, for example, by high performance liquid chromatography (HPLC).


The peptides of the invention may, further, serve the role of a prophylactic vaccine, wherein the host raises antibodies against the peptides of the invention, which then serve to neutralize HIV viruses by, for example, inhibiting further HIV infection.


Administration of the peptides of the invention as a prophylactic vaccine, therefore, would comprise administering to a host a concentration of peptides effective in raising an immune response which is sufficient to neutralize HIV, by, for example, inhibiting HIV ability to infect cells. The exact concentration will depend upon the specific peptide to be administered, but may be determined by using standard techniques for assaying the development of an immune response which are well known to those of ordinary skill in the art. The peptides to be used as vaccines are usually administered intramuscularly.


The peptides may be formulated with a suitable adjuvant in order to enhance the immunological response. Such adjuvants may include, but are not limited to mineral gels such as aluminum hydroxide; surface active substances such as lysolecithin, pluronic polyols, polyanions; other peptides; oil emulsions; and potentially useful human adjuvants such as BCG and Corynebacterium parvum. Many methods may be used to introduce the vaccine formulations described here. These methods include but are not limited to oral, intradermal, intramuscular, intraperitoneal, intravenous, subcutaneous, and intranasal routes.


Alternatively, an effective concentration of polyclonal or monoclonal antibodies raised against the peptides of the invention may be administered to a host so that no uninfected cells become infected by HIV. The exact concentration of such antibodies will vary according to each specific antibody preparation, but may be determined using standard techniques well known to those of ordinary skill in the art. Administration of the antibodies may be accomplished using a variety of techniques, including, but not limited to those described in this section.


For all such treatments described above, the exact formulation, route of administration and dosage can be chosen by the individual physician in view of the patient's condition. (See e.g. Fingl et al., 1975, in “The Pharmacological Basis of Therapeutics”, Ch. 1 p1).


It should be noted that the attending physician would know how to and when to terminate, interrupt, or adjust administration due to toxicity, or to organ dysfunctions. Conversely, the attending physician would also know to adjust treatment to higher levels if the clinical response were not adequate (precluding toxicity). The magnitude of an administrated dose in the management of the oncogenic disorder of interest will vary with the severity of the condition to be treated and the route of administration. The dose and perhaps dose frequency, will also vary according to the age, body weight, and response of the individual patient. A program comparable to that discussed above may be used in veterinary medicine.


Use of pharmaceutically acceptable carriers to formulate the compounds herein disclosed for the practice of the invention into dosages suitable for systemic administration is within the scope of the invention. With proper choice of carrier and suitable manufacturing practice, the compositions of the present invention, in particular, those formulated as solutions, may be administered parenterally, such as by intravenous injection. The compounds can be formulated readily using pharmaceutically acceptable carriers well known in the art into dosages suitable for oral administration. Such carriers enable the compounds of the invention to be formulated as tablets, pills, capsules, liquids, gels, syrups, slurries, suspensions and the like, for oral ingestion by a patient to be treated.


Pharmaceutical compositions suitable for use in the present invention include compositions wherein the active ingredients are contained in an effective amount to achieve its intended purpose. Determination of the effective amounts is well within the capability of those skilled in the art, especially in light of the detailed disclosure provided herein.


In addition to the active ingredients, these pharmaceutical compositions may contain suitable pharmaceutically acceptable carriers comprising excipients and auxiliaries which facilitate processing of the active compounds into preparations which can be used pharmaceutically. The preparations formulated for oral administration may be in the form of tablets, dragees, capsules, or solutions.


The pharmaceutical compositions of the present invention may be manufactured in a manner that is itself known, e.g., by means of conventional mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping or lyophilizing processes.


Pharmaceutical formulations for parenteral administration include aqueous solutions of the active compounds in water-soluble form. Additionally, suspensions of the active compounds may be prepared as appropriate oily injection suspensions. Suitable lipophilic solvents or vehicles include fatty oils such as sesame oil, or synthetic fatty acid esters, such as ethyl oleate or triglycerides, or liposomes. Aqueous injection suspensions may contain substances which increase the viscosity of the suspension, such as sodium carboxymethyl cellulose, sorbitol, or dextran. Optionally, the suspension may also contain suitable stabilizers or agents which increase the solubility of the compounds to allow for the preparation of highly concentrated solutions.


Pharmaceutical preparations for oral use can be obtained by combining the active compounds with solid excipient, optionally grinding a resulting mixture, and processing the mixture of granules, after adding suitable auxiliaries, if desired, to obtain tablets or dragee cores. Suitable excipients are, in particular, fillers such as sugars, including lactose, sucrose, mannitol, or sorbitol; cellulose preparations such as, for example, maize starch, wheat starch, rice starch, potato starch, gelatin, gum tragacanth, methyl cellulose, hydroxypropylmethyl-cellulose, sodium carboxymethylcellulose, and/or polyvinylpyrrolidone (PVP). If desired, disintegrating agents may be added, such as the cross-linked polyvinyl pyrrolidone, agar, or alginic acid or a salt thereof such as sodium alginate.


Dragee cores are provided with suitable coatings. For this purpose, concentrated sugar solutions may be used, which may optionally contain gum arabic, talc, polyvinyl pyrrolidone, carbopol gel, polyethylene glycol, and/or titanium dioxide, lacquer solutions, and suitable organic solvents or solvent mixtures. Dyestuffs or pigments may be added to the tablets or dragee coatings for identification or to characterize different combinations of active compound doses.


Pharmaceutical preparations which can be used orally include push-fit capsules made of gelatin, as well as soft, sealed capsules made of gelatin and a plasticizer, such as glycerol or sorbitol. The push-fit capsules can contain the active ingredients in admixture with filler such as lactose, binders such as starches, and/or lubricants such as talc or magnesium stearate and, optionally, stabilizers. In soft capsules, the active compounds may be dissolved or suspended in suitable liquids, such as fatty oils, liquid paraffin, or liquid polyethylene glycols. In addition, stabilizers may be added.


6. EXAMPLE
DP178 (SEQ ID:1) is a Potent Inhibitor of HIV-1 Infection

In this example, DP178 (SEQ ID:1) is shown to be a potent inhibitor of HIV-1 mediated CD-4+ cell-cell fusion and infection by cell free virus. In the fusion assay, this peptide completely blocks virus induced syncytia formation at concentrations of from 1-10 ng/ml. In the infectivity assay the inhibitory concentration is somewhat higher, blocking infection at 90 ng/ml. It is further shown that DP178 (SEQ ID:1) shows that the antiviral activity of DP178 (SEQ ID:1) is highly specific for HIV-1. Additionally, a synthetic peptide, DP-185 (SEQ ID:3), representing a HIV-1-derived DP178 homolog is also found to block HIV-1-mediated syncytia formation.


6.1. Materials and Methods
6.1.1. Peptide Synthesis

Peptides were synthesized using Fast Moc chemistry on an Applied Biosystems Model 431A peptide synthesizer. Generally, unless otherwise noted, the peptides contained amidated carboxy termini and acetylated amino termini. Amidated peptides were prepared using Rink resin (Advanced Chemtech) while peptides containing free carboxy termini were synthesized on Wang (p-alkoxy-benzyl-alcohol) resin (Bachem). First residues were double coupled to the appropriate resin and subsequent residues were single coupled. Each coupling step was followed by acetic anhydride capping. Peptides were cleaved from the resin by treatment with trifluoracetic acid (TFA) (10 ml), H2O (0.5 ml), thioanisole (0.5 ml), ethanedithiol (0.25 ml), and crystalline phenol (0.75 g). Purification was carried out by reverse phase HPLC.


Approximately 50 mg samples of crude peptide were chromatographed on a Waters Delta Pak C18 column (19 mm×30 cm, 15μ spherical) with a linear gradient;


H2O/acetonitrile 0.1% TFA. Lyophilized peptides were stored desiccated and peptide solutions were made in water at about 1 mg/ml. Electrospray mass spectrometry yielded the following results: DP178 (SEQ ID:1):4491.87 (calculated 4491.94); DP-180 (SEQ ID:2):4491.45 (calculated 4491.94); DP-185 (SEQ ID:3):not done (calculated 4546.97).


6.1.2. Virus

The HIV-1LAI virus was obtained from R. Gallo (Popovic, M. et al., 1984, Science 224:497-508) and propagated in CEM cells cultured in RPMI 1640 containing 10% fetal calf serum. Supernatant from the infected CEM cells was passed through a 0.2μm filter and the infectious titer estimated in a microinfectivity assay using the AA5 cell line to support virus replication. For this purpose, 25 μl of serial diluted virus was added to 75 μl AA5 cells at a concentration of 2×105/ml in a 96-well microtitre plate. Each virus dilution was tested in triplicate. Cells were cultured for eight days by addition of fresh medium every other day. On day 8 post infection, supernatant samples were tested for virus replication as evidenced by reverse transcriptase activity released to the supernatant. The TCID50 was calculated according to the Reed and Muench formula (Reed, L. J. et al., 1938, Am. J. Hyg. 27:493-497). The titer of the HIV-1LAI and HIV-1MN stocks used for these studies, as measured on the AA5 cell line, was approximately 1.4×106 and 3.8×104 TCID50/ml, respectively.


6.1.3. Cell Fusion Assay

Approximately 7×104 Molt cells were incubated with 1×104 CEM cells chronically infected with the HIV-1LAI virus in 96-well plates (one-half area cluster plates; Costar, Cambridge, Mass.) in a final volume of 100 μl culture medium as previously described (Matthews, T. J. et al., 1987, Proc. Natl. Acad. Sci. USA 84: 5424-5428). Peptide inhibitors were added in a volume of 10 μl and the cell mixtures were incubated for 24 hr. at 37° C. At that time, multinucleated giant cells were estimated by microscopic examination at a 40× magnification which allowed visualization of the entire well in a single field.


6.1.4. Cell Free Virus Infection Assay

Synthetic peptides were incubated at 37° C. with either 247 TCID50 (for experiment depicted in FIG. 2), or 62 TCID50 (for experiment depicted in FIG. 3) units of HIV-1LAI virus or 25 TCID50 units of HIV-2NIHZ and CEM CD4+ cells at peptide concentrations of 0, 0.04, 0.4, 4.0, and 40 μg/ml for 7 days. The resulting reverse transcriptase (RT) activity in counts per minute was determined using the assay described, below, in Section 6.1.5. See, Reed, L. J. et al., 1938, Am. J. Hyg. 27: 493-497 for an explanation of TCID50 calculations.


6.1.5. Reverse Transcriptase Assay

The micro-reverse transcriptase (RT) assay was adapted from Goff et al. (Goff, S. et al., 1981, J. Virol. 38:239-248) and Willey et al. (Willey, R. et al., 1988, J. Virol. 62:139-147). Supernatants from virus/cell cultures are adjusted to 1% Triton-X100. A 10 μl sample of supernatant was added to 50 μl of RT cocktail in a 96-well U-bottom microtitre plate and the samples incubated at 37° C. for 90 min. The RT cocktail contained 75 mM KCl, 2 mM dithiothreitol, 5 mM MgCl2, 5 μg/ml poly A (Pharmacia, cat. No. 27-4110-01), 0.25 units/ml oligo dT (Pharmacia, cat. No. 27-7858-01), 0.05% NP40, 50 mM Tris-HCl, pH 7.8, 0.5 μM non-radioactive dTTP, and 10 μCi/ml 32P-dTTP (Amersham, cat. No. PB.10167).


After the incubation period, 40 μl of reaction mixture was applied to a Schleicher and Schuell (S+S) NA45 membrane (or DE81 paper) saturated in 2×SSC buffer (0.3M NaCl and 0.003M sodium citrate) held in a S+S Minifold over one sheet of GB003 (S+S) filter paper, with partial vacuum applied. Each well of the minifold was washed four times with 200 μl 2×SSC, under full vacuum. The membrane was removed from the minifold and washed 2 more times in a pyrex dish with an excess of 2×SSC. Finally, the membrane was drained on absorbent paper, placed on Whatman #3 paper, covered with Saran wrap, and exposed to film overnight at −70° C.


6.2. Results
6.2.1. Peptide Inhibition of Infected Cell-induced Syncytia Formation

The initial screen for antiviral activity assayed peptides' ability to block syncytium formation induced by overnight co-cultivation of uninfected Molt4 cells with chronically HIV-1 infected CEM cells. The results of several such experiments are presented herein. In the first of these experiments, serial DP178 (SEQ ID:1) peptide concentrations between 10 μg/ml and 12.5 ng/ml were tested for blockade of the cell fusion process. For these experiments, CEM cells chronically infected with either HIV-1LAI, HIV-1MN, HIV-1RF, or HIV-1SF2 virus were cocultivated overnight with uninfected Molt 4 cells. The results (FIG. 4) show that DP178 (SEQ ID:1) afforded complete protection against each of the HIV-1 isolates down to the lowest concentration of DP178 (SEQ ID:1) used. For HIVLAI inhibition, the lowest concentration tested was 12.5 ng/ml; for all other HIV-1 viruses, the lowest concentration of DP178 (SEQ ID:1) used in this study was 100 ng/ml. A second peptide, DP-180 (SEQ ID:2), containing the same amino acid residues as DP178 (SEQ ID:1) but arranged in a random order exhibited no evidence of anti-fusogenic activity even at the high concentration of 40 μg/ml (FIG. 4). These observations indicate that the inhibitory effect of DP178 (SEQ ID:1) is primary sequence-specific and not related to non-specific peptide/protein interactions. The actual endpoint (i.e., the lowest effective inhibitory concentration) of DP178 inhibitory action is within the range of 1-10 ng/ml.


The next series of experiments involved the preparation and testing of a DP178 (SEQ ID:1) homolog for its ability to inhibit HIV-1-induced syncytia formation. As shown in FIG. 1, the sequence of DP-185 (SEQ ID:3) is slightly different from DP178 (SEQ ID:1) in that its primary sequence is taken from the HIV-1SF2 isolate and contains several amino acid differences relative to DP178 (SEQ ID:1) near the N terminus. As shown in FIG. 4, DP-185 (SEQ ID:3), exhibits inhibitory activity even at 312.5 ng/ml, the lowest concentration tested.


The next series of experiments involved a comparison of DP178 (SEQ ID:1) HIV-1 and HIV-2 inhibitory activity. As shown in FIG. 5, DP178 (SEQ ID:1) blocked HIV-1-mediated syncytia formation at peptide concentrations below 1 ng/ml. DP178 (SEQ ID:1) failed, however, to block HIV-2 mediated syncytia formation at concentrations as high as 10 μg/ml. This striking 4 log selectivity of DP178 (SEQ ID:1) as an inhibitor of HIV-1-mediated cell fusion demonstrates an unexpected HIV-1 specificity in the action of DP178 (SEQ ID:1). DP178 (SEQ ID:1) inhibition of HIV-1-mediated cell fusion, but the peptide's inability to inhibit HIV-2 medicated cell fusion in the same cell type at the concentrations tested provides further evidence for the high degree of selectivity associated with the antiviral action of DP178 (SEQ ID:1).


6.2.2. Peptide Inhibition of Infection by Cell-free Virus

DP178 (SEQ ID:1) was next tested for its ability to block CD-4+ CEM cell infection by cell free HIV-1 virus. The results, shown in FIG. 2, are from an experiment in which DP178 (SEQ ID:1) was assayed for its ability to block infection of CEM cells by an HIV-1LAI isolate. Included in the experiment were three control peptides, DP-116 (SEQ ID:9), DP-125 (SEQ ID:8), and DP-118 (SEQ ID:10). DP-116 (SEQ ID:9) represents a peptide previously shown to be inactive using this assay, and DP-125 (SEQ ID:8; Wild, C. et al., 1992, Proc. Natl. Acad, Sci. USA 89:10,537) and DP-118 (SEQ ID:10) are peptides which have previously been shown to be active in this assay. Each concentration (0, 0.04, 0.4, 4, and 40 μg/ml) of peptide was incubated with 247 TCID50 units of HIV-LAI virus and CEM cells. After 7 days of culture, cell-free supernatant was tested for the presence of RT activity as a measure of successful infection. The results, shown in FIG. 2, demonstrate that DP178 (SEQ ID:1) inhibited the de novo infection process mediated by the HIV-1 viral isolate at concentrations as low as 90 ng/ml (IC50=90 ng/ml). In contrast, the two positive control peptides, DP-125 (SEQ: ID:8) and DP-118 (SEQ ID:10), had over 60-fold higher IC50 concentrations of approximately 5 μg/ml.


In a separate experiment, the HIV-1 and HIV-2 inhibitory action of DP178 (SEQ ID:1) was tested with CEM cells and either HIV-1LAI or HIV-2NIHZ. 62 TCID50 HIV-1LAI or 25 GCID50 HIV-2NIHZ were used in these experiments, and were incubated for 7 days. As may be seen in FIG. 3, DP178 (SEQ ID:1) inhibited HIV-1 infection with an IC50 of about 31 ng/ml. In contrast, DP178 (SEQ ID:1) exhibited a much higher IC50 for HIV-2NIHZ, thus making DP178 (SEQ ID:1) two logs more potent as a HIV-1 inhibitor than a HIV-2 inhibitor. This finding is consistent with the results of the fusion inhibition assays described, above, in Section 6.2.1, and further supports a significant level of selectivity (i.e., for HIV-1 over HIV-2).


7. EXAMPLE
The HIV-1 Inhibitor, DP178 (SEQ ID:1) is Non-cytotoxic

In this Example, the 36 amino acid synthetic peptide inhibitor DP178 (SEQ ID:1) is shown to be non-cytotoxic to cells in culture, even at the highest peptide concentrations (40 μg/ml) tested.


7.1. Materials and Methods

Cell proliferation and toxicity assay: Approximately 3.8×105 CEM cells for each peptide concentration were incubated for 3 days at 37° C. in T25 flasks. Peptides tested were DP178 (SEQ ID:1) and DP-116 (SEQ ID:9), as described in FIG. 1. Peptides were synthesized as described, above, in Section 6.1. The concentrations of each peptide used were 0, 2.5, 10, and 40 μg/ml. Cell counts were taken at incubation times of 0, 24, 48, and 72 hours.


7.2. Results

Whether the potent HIV-1 inhibitor DP178 (SEQ ID:1) exhibited any cytotoxic effects was assessed by assaying the peptide's effects on the proliferation and viability of cells in culture. CEM cells were incubated in the presence of varying concentrations of DP178 (SEQ ID:1), and DP-116 (SEQ ID:9), a peptide previously shown to be ineffective as a HIV inhibitor (Wild, C. et al., 1992, Proc. Natl. Acad. Sci. USA 89:10,537-10,541). Additionally, cells were incubated in the absence of either peptide.


The results of the cytotoxicity study demonstrate that DP178 (SEQ ID:1) exhibits no cytotoxic effects on cells in culture. As can be seen, below, in Table XXIV, even the proliferation and viability characteristics of cells cultured for 3 days in the presence of the highest concentration of DP178 (SEQ ID:1) tested (40 μg/ml) do not significantly differ from the DP-116 (SEQ ID:9) or the no-peptide controls. The cell proliferation data is also represented in graphic form in FIG. 6. As was demonstrated in the Working Example presented above in Section 6, DP178 (SEQ ID:1) completely inhibits HIV-1 mediated syncytia formation at peptide concentrations between 1 and 10 ng/ml, and completely inhibits cell-free viral infection at concentrations of at least 90 ng/ml. Thus, this study demonstrates that even at peptide concentrations greater than 3 log higher than the HIV inhibitory dose, DP178 (SEQ ID:1) exhibits no cytotoxic effects.













TABLE XXIV










% Viability




Peptide
at time (hours)














Peptide
Concentration μg/ml
0
24
48
72


















DP178
40
98
97
95
97



(SEQ ID: 1)
10
98
97
98
98




2.5
98
93
96
96



DP116
40
98
95
98
97



(SEQ ID: 9)
10
98
95
93
98




2.5
98
96
98
99



No Peptide
0
98
97
99
98










8. EXAMPLE
The Interaction of DP178 and DP107

Soluble recombinant forms of gp41 used in the example described below provide evidence that the DP178 peptide associates with a distal site on gp41 whose interactive structure is influenced by the DP107 leucine zipper motif. A single mutation disrupting the coiled-coil structure of the leucine zipper domain transformed the soluble recombinant gp41 protein from an inactive to an active inhibitor of HIV-1 fusion. This transformation may result from liberation of the potent DP178 domain from a molecular clasp with the leucine zipper, DP107, determinant. The results also indicate that the anti-HIV activity of various gp41 derivatives (peptides and recombinant proteins) may be due to their ability to form complexes with viral gp41 and interfere with its fusogenic process.


8.1. Materials and Methods
8.1.1. Construction of Fusion Proteins and GP41 Mutants

Construction of fusion proteins and mutants shown in FIG. 7 was accomplished as follows: the DNA sequence corresponding to the extracellular domain of gp41 (540-686) was cloned into the Xmn I site of the expression vector pMal-p2 (New England Biolab) to give M41. The gp41 sequence was amplified from pgtat (Malim et al., 1988, Nature 355: 181-183) by using polymerase chain reaction (PCR) with upstream primer 5′-ATGACGCTGACGGTACAGGCC-3′ (primer A) and downstream primer 5′-TGACTAAGCTTAATACCACAGCCAATTTGTTAT-3′ (primer B). M41-P was constructed by using the T7-Gen in vitro mutagenesis kit from United States Biochemicals (USB) following the supplier's instructions. The mutagenic primer (5′-GGAGCTGCTTGGGGCCCCAGAC-3′) introduces an Ile to Pro mutation in M41 at position 578. M41Δ107, from which the DP-107 region has been deleted, was made using a deletion mutagenic primer 5′-CCAAATCCCCAGGAGCTGCTCGAGCTGCACTATACCAGAC-3′ (primer C) following the USB T7-Gen mutagenesis protocol. M41Δ178, from which the DP-178 region has been deleted, was made by cloning the DNA fragment corresponding to gp41 amino acids 540-642 into the Xmn I site of pMal-p2. Primer A and 5′-ATAGCTTCTAGATTAATTGTTAATTTCTCTGTCCC-3′ (primer D) were used in the PCR with the template pgtat to generate the inserted DNA fragments. M41-P was used as the template with primer A and D in PCR to generate M41-PΔ178. All inserted sequences and mutated residues were checked by restriction enzyme analysis and confirmed by DNA sequencing.


8.1.2. Purification and Characterization of Fusion Proteins

The fusion proteins were purified according to the protocol described in the manufacturer's brochure of protein fusion and purification systems from New England Biolabs (NEB). Fusion proteins (10 ng) were analyzed by electrophoresis on 8% SDS polyacrylamide gels. Western blotting analysis was performed as described by Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual, 2d Ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., Ch. 18, pp. 64-75. An HIV-1 positive serum diluted 1000-fold, or a human Fab derived from repertoire cloning was used to react with the fusion proteins. The second antibody was HRP-conjugated goat antihuman Fab. An ECL Western blotting detection system (Amersham) was used to detect the bound antibody. A detailed protocol for this detection system was provided by the manufacturer. Rainbow molecular weight markers (Amersham) were used to estimate the size of fusion proteins.


8.1.3. Cell Fusion Assays for Anti-HIV Activity

Cell fusion assays were performed as previously described (Matthews et al., 1987, Proc. Natl. Acad. Sci. USA 84: 5424-5481). CEM cells (7×104) were incubated with HIV-1IIIB chronically infected CEM cells (104) in 96-well flat-bottomed half-area plates (Costar) in 100 μl culture medium. Peptide and fusion proteins at various concentrations in 10 μl culture medium were incubated with the cell mixtures at 37° C. for 24 hours. Multinucleated syncytia were estimated with microscopic examination. Both M41 and M41-P did not show cytotoxicity at the concentrations tested and shown in FIG. 8.


Inhibition of HIV-1 induced cell-cell fusion activity was carried out in the presence of 10 nM DP178 and various concentrations of M41Δ178 or M41-PΔ178 as indicated in FIG. 9. There was no observable syncytia in the presence of 10 nM DP178. No peptide or fusion protein was added in the control samples.


8.1.4. Elisa Analysis of DP178 Binding to the Leucine Zipper Motif of GP41

The amino acid sequence of DP178 used is: YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF. For enzyme linked immunoassay (ELISA), M41Δ178 or M41-PΔ178 (5 μg/ml) in 0.1M NaHCO3, pH 8.6, were coated on 96 wells Linbro ELISA plates (Flow Lab, Inc.) overnight. Each well was washed three times with distilled water then blocked with 3% bovine serum albumin (BSA) for 2 hours. After blocking, peptides with 0.5% BSA in TBST (40 mM Tris-HCl pH7.5, 150 mM NaCl, 0.05% Tween 20) were added to the ELISA plates and incubated at room temperature for 1 hour. After washing three times with TBST, Fab-d was added at a concentration of 10 ng/ml with 0.5% BSA in TBST. The plates were washed three times with TBST after incubation at room temperature for 1 hour. Horse radish peroxidase (HRP) conjugated goat antihuman Fab antiserum at a 2000 fold dilution in TBST with 0.5% BSA was added to each well and incubated at room temperature for 45 minutes. The plates were then washed four times with TBST. The peroxidase substrate o-phenylene diamine (2.5 mg/ml) and 0.15% H2O2 were added to develop the color. The reaction was stopped with an equal volume of 4.5 N H2SO4 after incubation at room temperature for 10 minutes. The optical density of the stopped reaction mixture was measured with a micro plate reader (Molecular Design) at 490 nm. Results are shown in FIG. 10.


8.2. Results
8.2.1. The Expression and Characterization of the Ectodomain of qp41

As a step toward understanding the roles of the two helical regions in gp41 structure and function, the ectodomain of gp41 was expressed as a maltose binding fusion protein (M41) (FIG. 7). The fusogenic peptide sequence at the N-terminal of gp41 was omitted from this recombinant protein and its derivatives to improve solubility. The maltose binding protein facilitated purification of the fusion proteins under relatively mild, non-denaturing conditions. Because the M41 soluble recombinant gp41 was not glycosylated, lacked several regions of the transmembrane protein (i.e., the fusion peptide, the membrane spanning, and the cytoplasmic domains), and was expressed in the absence of gp120, it was not expected to precisely reflect the structure of native gp41 on HIV-1 virions. Nevertheless, purified M41 folded in a manner that preserved certain discontinuous epitopes as evidenced by reactivity with human monoclonal antibodies, 98-6, 126-6, and 50-69, previously shown to bind conformational epitopes on native gp41 expressed in eukaryotic cells (Xu et al., 1991, J. Virol. 65: 4832-4838; Chen, 1994, J. Virol. 68:2002-2010). Thus, at least certain regions of native gp41 defined by these antibodies appear to be reproduced in the recombinant fusion protein M41. Furthermore, M41 reacted with a human recombinant Fab (Fab-d) that recognizes a conformational epitope on gp41 and binds HIV-1 virions as well as HIV-1 infected cells but not uninfected cells as analyzed by FACS. Deletion of either helix motif, i.e., DP107 or DP178, of the M41 fusion protein eliminated reactivity with Fab-d. These results indicate that both helical regions, separated by 60 amino acids in the primary sequence, are required to maintain the Fab-d epitope.


8.2.2. Anti-HIV Activity of the Recombinant Ectodomain of GP41

The wild type M41 fusion protein was tested for anti-HIV-1 activity. As explained, supra, synthetic peptides corresponding to the leucine zipper (DP107) and the C-terminal putative helix (DP178) show potent anti-HIV activity. Despite inclusion of both these regions, the recombinant M41 protein did not affect HIV-1 induced membrane fusion at concentrations as high as 50 μM (Table XXV, below).









TABLE XXV







DISRUPTION OF THE LEUCINE ZIPPER OF


GP41 FREES THE ANTI-HIV MOTIF













DP107
DP178
M41
M41-P
M41-PΔ178
















Cell fusion
1 μM
1 nM
>50 μM
83 nM
>50 μM


(IC90)


Fab-D
—
—
3.5 × 10−9
2.5 × 10−8
—


binding (kD)


HIV infectiv-
1 μM
80 nM
>16 μM
66 nM
>8 μM


ity (IC90)






1The affinity constants of Fab-d binding to the fusion proteins were determined using a protocol described by B. Friguet et al., 1985, J. Immunol. Method. 77:305-319.


— = No detectable binding of Fab-d to the fusion proteins.


Antiviral Infectivity Assays. 20 μl of serially diluted virus stock was incubated for 60 minutes at ambient temperature with 20 μl of the indicatedconcentration of purified recombinant fusion protein in RPMI 1640 containing 10% fetal bovine serum and antibiotics in a 96-well microteter plate. 20 μl of CEM4 cells at 6 × 105 cells/ml were added to each well, and cultures were incubated at 37° C. in a humidified CO2 incubator. Cells were cultured for 9 days by the


# addition of fresh medium every 2 to 3 days. On days 5, 7, and 9 postinfection, supernatant samples were assayed for reverse transcriptase (RT) activity, as described below, to minitor viral replication. The 50% tissue culture infectious dose (TCID50) was calculated for each condition according to the formula of Reed & Muench, 1937, Am. J. Hyg. 27:493-497. RT activity was determined by a modification of the published methods of Goff et al., 1981, J. Virol. 38:239-248 and Willey et al.,


# 1988, J. Virol. 62:139-147 as described in Chen et al., 1993, AIDS Res. Human Retroviruses 9:1079-1086.






Surprisingly, a single amino acid substitution, proline in place of isoleucine in the middle of the leucine zipper motif, yielded a fusion protein (M41-P) which did exhibit antiviral activity (Table XXV and FIG. 8). As seen in Table XXV, M41-P blocked syncytia formation by 90% at approximately 85 nM and neutralized HIV-1IIIB infection by 90% at approximately 70 nM concentrations. The anti-HIV-1 activity of M41-P appeared to be mediated by the C-terminal helical sequence since deletion of that region from M41-P yielded an inactive fusion protein, M41-PΔ178 (Table XXV). This interpretation was reinforced by experiments demonstrating that a truncated fusion protein lacking the DP178 sequence, M41Δ178, abrogated the potent anti-fusion activity of the DP178 peptide in a concentration-dependent manner (FIG. 9). The same truncated fusion protein containing the proline mutation disrupting the leucine zipper, M41-PΔ178, was not active in similar competition experiments (FIG. 9). The results indicate that the DP178 peptide associates with a second site on gp41 whose interactive structure is dependent on a wild type leucine zipper sequence. A similar interaction may occur within the wild type fusion protein, M41, and act to form an intramolecular clasp which sequesters the DP178 region, making it unavailable for anti-viral activity.


A specific association between these two domains is also indicated by other human monoclonal Fab-d studies. For example, Fab-d failed to bind either the DP178 peptide or the fusion protein M41Δ178, but its epitope was reconstituted by simply mixing these two reagents together (FIG. 10). Again, the proline mutation in the leucine zipper domain of the fusion protein, M41-PΔ178, failed to reconstitute the epitope in similar mixing experiments.


9. EXAMPLE
Method for Computer-assisted Identification of DP107-Like and DP178-Like Sequences

A number of known coiled-coil sequences have been well described in the literature and contain heptad repeat positioning for each amino acid. Coiled-coil nomenclature labels each of seven amino acids of a heptad repeat A through G, with amino acids A and D tending to be hydrophobic positions. Amino acids E and G tend to be charged. These four positions (A, D, E, and G) form the amphipathic backbone structure of a monomeric alpha-helix. The backbones of two or more amphipathic helices interact with each other to form di-, tri-, tetrameric, etc., coiled-coil structures. In order to begin to design computer search motifs, a series of well characterized coiled coils were chosen including yeast transcription factor GCN4, Influenza Virus hemagglutinin loop 36, and human proto-oncogenes c-Myc, c-Fos, and c-Jun. For each peptide sequence, a strict homology for the A and D positions, and a list of the amino acids which could be excluded for the B, C, E, F, and G positions (because they are not observed in these positions) was determined. Motifs were tailored to the DP107 and DP178 sequences by deducing the most likely possibilities for heptad positioning of the amino acids of HIV-1 Bru DP-107, which is known to have coiled-coil structure, and HIV-1 Bru DP178, which is still structurally undefined. The analysis of each of the sequences is contained in FIG. 12. For example, the motif for GCN4 was designed as follows:

  • 1. The only amino acids (using standard single letter amino acid codes) found in the A or D positions of GCN4 were [LMNV].
  • 2. All amino acids were found at B, C, E, F, and G positions except {CFGIMPTW}.
  • 3. The PESEARCH motif would, therefore, be written as follows:
    • [LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)-
    • [LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)-
    • [LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)-
    • [LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)


      Translating or reading the motif: “at the first A position either L, M, N, or V must occur; at positions B and C (the next two positions) accept everything except C, F, G, I, M, P, T, or W; at the D position either L, M, N, or V must occur; at positions E, F, and G (the next 3 positions) accept everything except C, F, G, I, M, P, T, or W.” This statement is contained four times in a 28-mer motif and five times in a 35-mer motif. The basic motif key then would be: [LMNV]-{CFGIMPTW}. The motif keys for the remaining well described coiled-coil sequences are summarized in FIG. 12.


The motif design for DP107 and DP178 was slightly different than the 28-mer model sequences described above due to the fact that heptad repeat positions are not defined and the peptides are both longer than 28 residues. FIG. 13 illustrates several possible sequence alignments for both DP107 and DP178 and also includes motif designs based on 28-mer, 35-mer, and full-length peptides. Notice that only slight differences occur in the motifs as the peptides are lengthened. Generally, lengthening the base peptide results in a less stringent motif. This is very useful in broadening the possibilities for identifying DP107-or DP-178-like primary amino acid sequences referred to in this document as “hits”.


In addition to making highly specific motifs for each type peptide sequence to be searched, it is also possible to make “hybrid” motifs. These motifs are made by “crossing” two or more very stringent motifs to make a new search algorithm which will find not only both “parent” motif sequences but also any peptide sequences which have similarities to one, the other, or both “parents”. For example, in FIG. 14 the “parent” sequence of GCN4 is crossed with each of the possible “parent” motifs of DP-107. Now the hybrid motif must contain all of the amino acids found in the A and D positions of both parents, and exclude all of the amino acids not found in either parent at the other positions. The resulting hybrid from crossing GCN4 or [LMNV] {CFGIMPTW} and DP107 (28-mer with the first L in the D position) or [ILQT] {CDFIMPST}, is [ILMNQTV] {CFIMPT}. Notice that now only two basic hybrid motifs exist which cover both framing possibilities, as well as all peptide lengths of the parent DP-107 molecule. FIG. 15 represents the “hybridizations” of GCN4 with DP-178. FIG. 16 represents the “hybridizations” of DP107 and DP178. It is important to keep in mind that the represented motifs, both parent and hybrid, are motif keys and not the depiction of the full-length motif needed to actually do the computer search.


Hybridizations can be performed on any combination of two or more motifs. FIG. 17 summarizes several three-motif hybridizations including GCN4, DP107 (both frames), and DP178 (also both frames). Notice that the resulting motifs are now becoming much more similar to each other. In fact, the first and third hybrid motifs are actually subsets of the second and fourth hybrid motifs respectively. This means that the first and third hybrid motifs are slightly more stringent than the second and fourth. It should also be noted that with only minor changes in these four motifs, or by hybridizing them, a single motif could be obtained which would find all of the sequences. However, it should be remembered that stringency is also reduced. Finally, the most broad-spectrum and least-stringent hybrid motif is described in FIG. 18 which summarizes the hybridization of GCN4, DP107 (both frames), DP178 (both frames), c-Fos, c-Jun, c-Myc, and Flu loop 36.


A special set of motifs was designed based on the fact that DP-178 is located only approximately ten amino acids upstream of the transmembrane spanning region of gp41 and just C-terminal to a proline which separates DP107 and DP178. It has been postulated that DP178 may be an amphipathic helix when membrane associated, and that the proline might aid in the initiation of the helix formation. The same arrangement was observed in Respiratory Syncytial Virus; however, the DP178-like region in this virus also had a leucine zipper just C-terminal to the proline. Therefore, N-terminal proline-leucine zipper motifs were designed to analyze whether any other viruses might contain this same pattern. The motifs are summarized in FIG. 19.


The PC/Gene protein database contains 5879 viral amino acid sequences (library file PVIRUSES; CD-ROM release 11.0). Of these, 1092 are viral enveloped or glycoprotein sequences (library file PVIRUSE1). Tables V through XIV contain lists of protein sequence names and motif hit locations for all the motifs searched.


10. EXAMPLE
Computer-assisted Identification of DP107 and DP178-Like Sequences in Human Immunodrficiency Virus


FIG. 20 represents search results for HIV-1 BRU isolate gp41 (PC/Gene protein sequence PENV_HV1BR). Notice that the hybrid motif which crosses DP-107 and DP-178 (named 107x178x4; the same motif as found in FIG. 16 found three hits including amino acids 550-599, 636-688, and 796-823. These areas include DP-107 plus eight N-terminal and four C-terminal amino acids; DP178 plus seven N-terminal and ten C-terminal amino acids; and an area inside the transmembrane region (cytoplasmic). FIG. 20 also contains the results obtained from searching with the motif named ALLMOTI5, for which the key is found in FIG. 17 .({CDGHP} {CFP}x5). This motif also found three hits including DP107 (amino acids 510-599), DP178 (615-717), and a cytoplasmic region (772-841). These hits overlap the hits found by the motif 107x178x4 with considerable additional sequences on both the amino and carboxy termini. This is not surprising in that 107x178x4 is a subset of the ALLMOTI5 hybrid motif. Importantly, even though the stringency of ALLMOTI5 is considerably less than 107x178x4, it still selectively identifies the DP107 and DP178 regions of gp41 shown to contain sequences for inhibitory peptides of HIV-1. The results of these two motif searches are summarized in Table V under the PC/Gene protein sequence name PENV HV1BR. The proline-leucine zipper motifs also gave several hits in HIV-1 BRU including 503-525 which is at the very C-terminus of gp120, just upstream of the cleavage site (P7LZIPC and P12LZIPC); and 735-768 in the cytoplasmic domain of gp41 (P23LZIPC). These results are found in Tables VIII, IX, and X under the same sequence name as mentioned above. Notice that the only area of HIV-1 BRU which is predicted by the Lupas algorithm to contain a coiled-coil region, is from amino acids 635-670. This begins eight amino acids N-terminal to the start and ends eight amino acids N-terminal to the end of DP178. DP107, despite the fact that it is a known coiled coil, is not predicted to contain a coiled-coil region using the Lupas method.


11. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences in Human Respiratory Syncytial Virus


FIG. 21 represents search results for Human Respiratory Syncytial Virus (RSV; Strain A2) fusion glycoprotein F1 (PC/Gene protein sequence name PVGLF_HRSVA). Motif 107x178x4 finds three hits including amino acids 152-202, 213-243, and 488-515. The arrangement of these hits is similar to what is found in HIV-1 except that the motif finds two regions with similarities to DP-178, one just downstream of what would be called the DP107 region or amino acids 213-243, and one just upstream of the transmembrane region (also similar to DP178) or amino acids 488-515. Motif ALLMOTI5 also finds three areas including amino acids 116-202, 267-302, and 506-549. The proline-leucine zipper motifs also gave several hits including amino acids 205-221 and 265-287 (PILZIPC 265-280, P12LZIPC), and 484-513 (P7LZIPC and P12LZIPC 484-506, P23LZIPC). Notice that the PLZIP motifs also identify regions which share location similarities with DP-178 of HIV-1.


12. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences in Simian Immunodeficiency Virus

Motif hits for Simian immunodeficiency Virus gp41(AGM3 isolate; PC/Gene protein sequence name PENV_SIVAG) are shown in FIG. 22. Motif 107x178x4 finds three hits including amino acids 566-593, 597-624, and 703-730. The first two hits only have three amino acids between them and could probably be combined into one hit from 566-624 which would represent a DP107-like hit. Amino acids 703 to 730 would then represent a DP178-like hit. ALLMOTI5 also finds three hits including amino acids 556-628 (DP107-like), 651-699 (DP178-like), and 808-852 which represents the transmembrane spanning region. SIV also has one region from 655-692 with a high propensity to form a coiled coil as predicted by the Lupas algorithm. Both 107x178x4 and ALLMOTI5 motifs find the same region. SIV does not have any PLZIP motif hits in gp41.


The identification of DP178/DP107 analogs for a second SIV isolate (MM251) is demonstrated in the Example presented, below, in Section 19.


13. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178 Like Sequences in Canine Distemper Virus

Canine Distemper Virus (strain Onderstepoort) fusion glycoprotein F1 (PC/Gene Protein sequence name PVGLF_CDVO) has regions similar to Human RSV which are predicted to be DP107-like and DP178-like (FIG. 23). Motif 107x178x4 highlights one area just C-terminal to the fusion peptide at amino acids 252-293. Amino acids 252-286 are also predicted to be coiled coil using the Lupas algorithm. Almost 100 amino acids C-terminal to the first region is a DP178-like area at residues 340-367. ALLMOTI5 highlights three areas of interest including: amino acids 228-297, which completely overlaps both the Lupas prediction and the DP107-like 107x178x4 hit; residues 340-381, which overlaps the second 107x178x4 hit; and amino acids 568-602, which is DP178-like in that it is located just N-terminal to the transmembrane region. It also overlaps another region (residues 570-602) predicted by the Lupas method to have a high propensity to form a coiled coil. Several PLZIP motifs successfully identified areas of interest including P6 and P12LZIPC which highlight residues 336-357 and 336-361 respectively; P1 and P12LZIPC which find residues 398-414; and P12 and P23LZIPC which find residues 562-589 and 562-592 respectively.


14. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences in Newcastle Disease Virus


FIG. 24 shows the motif hits found in Newcastle Disease Virus (strain Australia-Victoria/32; PC Gene protein sequence name PVGLF_NDVA). Motif 107x178x4 finds two areas including a DP107-like hit at amino acids 151-178 and a DP178-like hit at residues 426-512. ALLMOTI5 finds three areas including residues 117-182, 231-272, and 426-512. The hits from 426-512 include a region which is predicted by the Lupas method to have a high coiled-coil propensity (460-503). The PLZIP motifs identify only one region of interest at amino acids 273-289 (P1 and 12LZIPC).


15. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences in Human Parainfluenza Virus

Both motifs 107x178x4 and ALLMOTI5 exhibit DP107-like hits in the same region, 115-182 and 117-182 respectively, of Human Parainfluenza Virus (strain NIH 47885; PC/Gene protein sequence name PVGLF_p13H4; (FIG. 25). In addition, the two motifs have a DP178-like hit just slightly C-terminal at amino acids 207-241. Both motifs also have DP178-like hits nearer the transmembrane region including amino acids 457-497 and 462-512 respectively. Several PLZIP motif hits are also observed including 283-303 (P5LZIPC), 283-310 (P12LZIPC), 453-474 (P6LZIPC), and 453-481 (P23LZIPC). The Lupas algorithm predicts that amino acids 122-176 may have a propensity to form a coiled-coil.


16. EXAMPLE
Computer-assisted Identification of DP107-Like and DP178-Like Sequences of influenza A Virus


FIG. 26 illustrates the Lupas prediction for a coiled coil in Influenza A Virus (strain A/Aichi/2/68) at residues 379-436, as well as the motif hits for 107x178x4 at amino acids 387-453, and for ALLMOTI5 at residues 380-456. Residues 383-471 (38-125 of HA2) were shown by Carr and Kim to be an extended coiled coil when under acidic pH (Carr and Kim, 1993, Cell 73: 823-832). The Lupas algorithm predicts a coiled-coil at residues 379-436. All three methods successfully predicted the region shown to actually have coiled-coil structure; however, ALLMOTI5 predicted the greatest portion of the 88 residue stretch.


17. EXAMPLE
Potential Respiratory Syncytial Virus DP178/DP107 Analogs: CD and Antiviral Characterization

In the Example presented herein, respiratory syncytial virus (RSV) peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 11, above, were tested for anti-RSV activity. Additionally, circular dichroism (CD) structural analyses were conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that several of these peptides exhibit a substantial helical character.


17.1 Materials and Methods

Structural analyses: The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptides were synthesized according to the methods described, above, in Section 6.1. Peptide concentrations were determined from A280 using Edlehoch's method (1967, Biochemistry 6:1948).


Anti-RSV antiviral activity assays: The assay utilized herein tested the ability of the peptides to disrupt the ability of HEp2 cells acutely infected with RSV (i.e., cells which are infected with a multiplicity of infection of greater than 2) to fuse and cause syncytial formation on a monolayer of uninfected an uninfected line of Hep-2 cells. The lower the observed level of fusion, the greater the antiviral activity of the peptide was determined to be.


Uninfected confluent monolayers of Hep-2 cells were grown in microtiter wells in 3% EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 3%, antibiotics (penicillin/streptomycin; Bio Whittaker Cat. No. 17-602E) added at 1%, and glutamine added at 1%.


To prepare Hep2 cells for addition to uninfected cells, cultures of acutely infected Hep2 cells were washed with DPBS (Dulbecco's Phosphate Buffered Saline w/o calcium or magnesium; Bio Whittaker Cat. No. 17-512F) and cell monolayers were removed with Versene (1:5000; Gibco Life Technologies Cat. No. 15040-017). The cells were spun 10 minutes and resuspended in 3% FBS. Cell counts were performed using a hemacytometer. Persistent cells were added to the uninfected Hep-2 cells.


The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Hep-2 cells, then adding peptides (at the dilutions described below) in 3% EMEM, and 100 acutely RSV-infected Hep2 cells per well. Wells were then incubated at 37° C. for 48 hours.


After incubation, cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of either Crystal Violet stain or XTT. With respect to Crystal Violet, approximately 50 μl 0.25% Crystal Violet stain in methanol were added to each well. The wells were rinsed immediately, to remove excess stain, and were allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.


With respect to XTT (2,3-bis[2-Methoxy-4-nitro-5-sulfophenyl]-2H-tetrazolium-5-carboxyanilide inner salt), 50 μl XTT (1 mg/ml in RPMI buffered with 100 mM HEPES, pH 7.2-7.4, plus 5% DMSO) were added to each well. The OD450/690 was measured (after blanking against growth medium without cells or reagents, and against reagents) according to standard procedures.


Peptides: The peptides characterized in the study presented herein were:

  • 1) peptides T-142 to T-155 and T-575, as shown in FIG. 27A, and peptides T-22 to T-27, T-68, T-334 and T-371 to T-375 and T-575, as shown in FIG. 27B;
  • 2) peptides T-120 to T-141 and T-576, as shown in FIG. 27B, and peptides T-12, T-13, T-15, T-19, T-28 to T-30, T-66, T-69, T-70 and T-576, as shown in FIG. 27D; and
  • 3) peptides T-67 and T-104 to T-119 and T-384, as shown in FIG. 28A, and peptides T-71, T-613 to T-617, T-662 to T-676 and T-730, as shown in FIG. 28B.


The peptides of group 1 represent portions of the RSV F2 protein DP178/107-like region. The peptides of group 2 represent portions of the RSV F1 protein DP107-like region. The peptides of groups 3 represent portions of the RSV F1 protein DP178-like region.


Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used. The IC50 data for each peptide represents the average of several experiments conducted utilizing that peptide.


17.2 Results

The data summarized in FIGS. 27A-B and 28A-B represent antiviral and structural information obtained from peptides derived from the RSV F2 DP178/DP107-like F2 region (FIGS. 27A-B), the RSV F1DP-107-like region (FIG. 27C-D) and the RSV DP178-like F2 region (FIGS. 28A-B).


As shown in FIGS. 27A-D, a number of the RSV DP178/DP107-like peptides exhibited a detectable level of antiviral activity. Peptides from the RSV DP178/DP107-like F2 region (FIGS. 27A-B), for example, T-142 to T-145 and T-334 purfied peptides, exhibited detectable levels of antiviral activity, as evidenced by their IC50 values. Further, a number of RSV F1DP107-like peptides (FIGS. 27C-D) exhibited a sizable level of antiviral activity as purified peptides, including, for example, peptides T-124 to T-127, T-131, T-135 and T-137 to T-139, as demonstrated by their low IC50 values. In addition, CD analysis FIGS. 27A, 27C) reveals that many of the peptides exhibit some detectable level of helical structure.


The results summarized in FIGS. 28A-B demonstrate that a number of DP178-like purified peptides exhibit a range of potent anti-viral activity. These peptides include, for example, T-67, T-104, T-105 and T-107 to T-119, as listed in FIG. 28A, and T-665 to T-669 and T-671 to T-673, as listed in FIG. 28B. In addition, some of the DP178-like peptides exhibited some level of helicity.


Thus, the computer assisted searches described, hereinabove, successfully identified viral peptide domains that represent highly promising anti-RSV antiviral compounds.


18. EXAMPLE
Potential Human Parainfluenza Virus Type 3 DP178/DP107 Analogs: CD and Antiviral Characterization

In the Example presented herein, human parainfluenza virus type 3 (HPIV3) peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 15, above, were tested for anti-HPIV3 activity. Additionally, circular dichroism (CD) structural analyses were conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that several of these peptides exhibit a substantial helical character.


18.1 Materials and Methods

Structural analyses: Structural analyses consisted of circular dichroism (CD) studies. The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptide concentrations were determined from A280 using Edlehoch's method (1967, Biochemistry 6:1948).


Anti-HPIV3 antiviral activity assays: The assay utilized herein tested the ability of the peptides to disrupt the ability of Hep2 cells chronically infected with HPIV3 to fuse and cause syncytial formation on a monolayer of an uninfected line of CV-1W cells. The more potent the lower the observed level of fusion, the greater the antiviral activity of the peptide.


Uninfected confluent monolayers of CV-1W cells were grown in microtiter wells in 3% EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 3%, antibiotics/antimycotics (Gibco BRL Life Technologies Cat. No. 15040-017) added at 1%, and glutamine added at 1%.


To prepare Hep2 cells for addition to uninfected cells, cultures of chronically infected Hep2 cells were washed with DPBS (Dulbecco's Phosphate Buffered Saline w/o calcium or magnesium; Bio Whittaker Cat. No. 17-512F) and cell monolayers were removed with Versene (1:5000; Gibco Life Technologies Cat. No. 15040-017). The cells were spun 10 minutes and resuspended in 3% FBS. Cell counts were performed using a hemacytometer. Persistent cells were added to the uninfected CV-1W cells.


The antiviral assay was conducted by, first, removing all media from the wells containing uninfected CV-1W cells, then adding peptides (at the dilutions described below) in 3% EMEM, and 500 chronically HPIV3-infected Hep2 cells per well. Wells were then incubated at 37° C. for 24 hours.


On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.


Alternatively, instead of Crystal Violet analysis, cells were assayed with XTT, as described, above, in Section 17.1.


Peptides: The peptides characterized in the study presented herein were:

  • 1) Peptides 157 to 188, as shown in FIG. 29A, and peptides T-38 to T-40, T-42 to T-46 and T-582, as shown in FIG. 29B. These peptides are derived from the DP107 region of the HPIV3 F1 fusion protein (represented by HPF3 107, as shown in FIG. 29A); and
  • 2) Peptides 189 to 210, as shown in FIG. 30A, and T-269, T-626, T-383 and T-577 to T-579, as shown in FIG. 30B. These peptides are primarily derived from the DP178 region of the HPIV3 F1 fusion protein (represented by HPF3 178, as shown in FIG. 30A). Peptide T-626 contains two mutated amino acid resides (represented by a shaded background). Additionally, peptide T-577 represents F1 amino acids 65-100, T-578 represents F1 amino acids 207-242 and T-579 represents F1 amino acids 273-309.


Each peptide was tested at 2-fold serial dilutions ranging from 500 μg/ml to approximately 500 ng/ml. For each of the assays, a well containing no peptide was also used.


18.2 Results

The data summarized in FIGS. 29A-B and 30A-B represent antiviral and structural information obtained from peptides derived from the HPIV3 fusion protein DP107-like region (FIGS. 29A-C) and the HPIV3 fusion protein DP178-like region (FIGS. 30A-B).


As shown in FIG. 29A-B, a number of the HPIV3 DP107-like peptides exhibited potent levels of antiviral activity. These peptides include, for example, peptides T-40, T-172 to T-175, T-178, T-184 and T-185.


CD analysis reveals that a number of the peptides exhibit detectable to substantial level of helical structure.


The results summarized in FIGS. 30A-B demonstrate that a number of the DP178-like peptides tested exhibit a range of anti-viral activity. These peptides include, for example, peptides 194 to 211, as evidenced by their low IC50 values. In fact, peptides 201 to 205 exhibit IC50 values in the nanogram/ml range. In addition, many of the DP178-like peptides exhibited some level of helicity.


Thus, the computer assisted searches described, hereinabove, have successfully identified viral peptide domains that represent highly promising anti-HPIV3 antiviral compounds.


19. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Simian Immodefeficiency Virus


FIG. 31 represents search results for SIV isolate MM251 (PC/Gene® protein sequence PENV_SIVM2). Both 107×178×4 and ALLMOTI5 search motifs identified two regions with similarities to DP107 and/or DP178.


The peptide regions found by 107x178x4 were located at amino acid residues 156-215 and 277-289. The peptide regions found by ALLMOTI5 were located at amino acid residues 156-219 and 245-286. Both motifs, therefore, identify similar regions.


Interestingly, the first SIV peptide region (i.e., from amino acid residue 156 to approximately amino acid residue 219) correlates with a DP107 region, while the second region identified (i.e., from approximately amino acid residue 245 to approximately amino acid residue 289) correlates with the DP178 region of HIV. In fact, an alignment of SIV isolate MM251 and HIV isolate BRU, followed by a selection of the best peptide matches for HIV DP107 and DP178, reveals that the best matches are found within the peptide regions identified by the 107x178x4 and ALLMOTI5 search motifs.


It should be noted that a potential coiled-coil region at amino acid residues 242-282 is predicted by the Lupas program. This is similar to the observation in HIV in which the coiled-coil is predicted by the Lupas program to be in the DP178 rather than in the DP107 region. It is possible, therefore, that SIV may be similar to HIV in that it may contain a coiled-coil structure in the DP107 region, despite such a structure being missed by the Lupas algorithm. Likewise, it may be that the region corresponding to a DP178 analog in SIV may exhibit an undefined structure, despite the Lupas program's prediction of a coiled-coil structure.


20. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Epstein-Barr Virus

The results presented herein describe the identification of DP178/DP107 analogs within two different Epstein-Barr Virus proteins. Epstein-Barr is a human herpes virus which is the causative agent of, for example, infectious mononucleosis (IM), and is also associated with nasopharyngeal carcinomas (NPC), Burkitt's lymphoma and other diseases. The virus predominantly exists in the latent form and is activated by a variety of stimuli.



FIG. 32 depicts the search motif results for the Epstein-Barr Virus (Strain B95-8; PC/Gene® protein sequence PVGLB_EBV) glycoprotein gp110 precursor (gp115). The 107x178x4 motif identified two regions of interest, namely the regions covered by amino acid residues 95-122 and 631-658. One PZIP region was identified at amino acid residue 732-752 which is most likely a cytoplasmic region of the protein. The Lupas algorithm predicts a coiled-coil structure for amino acids 657-684. No ALLMOTI5 regions were identified.



FIG. 33 depicts the search motif results for the Zebra (or EB1) trans-activator protein (BZLF1) of the above-identified Epstein-Barr virus. This protein is a transcription factor which represents the primary mediator of viral reactivation. It is a member of the b-ZIP family of transcription factors and shares significant homology with the basic DNA-binding and dimerization domains of the cellular oncogenes c-fos and C/EBP. The Zebra protein functions as a homodimer.


Search results demonstrate that the Zebra protein exhibits a single region which is predicted to be either of DP107 or DP178 similarity, and is found between the known DNA binding and dimerization regions of the protein. Specifically, this region is located at amino acid residues 193-220, as shown in FIG. 33. The Lupas program predicted no coiled-coil regions.


21. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Measles Virus


FIG. 34 illustrates the motif search results for the fusion protein F1 of measles virus, strain Edmonston (PC Gene® protein sequence PVGLF_MEASE), successfully identifying DP178/DP107 analogs.


The 107x178x4 motif identifies a single region at amino acid residues 228-262. The ALLMOTI5 search motif identifies three regions, including amino acid residues 116-184, 228-269 and 452-500. Three regions containing proline residues followed by a leucine zipper-like sequence were found beginning at proline residues 214, 286 and 451.


The Lupas program identified two regions it predicted had potential for coiled-coil structure, which include amino acid residues 141-172 and 444-483.


22. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Hepatitis B Virus


FIG. 35 depicts the results of a PZIP motif search conducted on the Hepatitis B virus subtype AYW. Two regions of interest within the major surface antigen precursor S protein were identified. The first lies just C-terminal to the proposed fusion peptide of the major surface antigen (Hbs) which is found at amino acid residues 174-191. The second region is located at amino acid residues 233-267. The Lupas program predicts no coiled-coil repeat regions.


In order to test the potential anti-HBV antiviral activity of these D178/DP107 analog regions, peptides derived from area around the analog regions are synthesized, as shown in FIGS. 52A-B. These peptides represent one amino acid peptide “walks” through the putative DP178/DP107 analog regions. The peptides are synthesized according to standard Fmoc chemistry on Rinkamide MBHA resins to provide for carboxy terminal blockade (Chang, C. D. and Meinhofer, J., 1978, Int. J. Pept. Protein Res. 11:246-249; Fields, G. B. and Noble, R. L., 1990, Int. J. Pept. Protein Res. 35:161-214). Following complete synthesis, the peptide amino-terminus is blocked through automated acetylation and the peptide is cleaved with trifluoroacetic acid (TFA) and the appropriate scavengers (King, D. S. et al., 1990, Int. J. Pept. Res. 36:255-266). After cleavage, the peptide is precipitated with ether and dried under vacuum for 24 hours.


The anti-HBV activity of the peptides is tested by utilizing standard assays to determine the test peptide concentration required to cause an acceptable (e.g., 90%) decrease in the amount of viral progeny formed by cells exposed to an HBV viral inoculum. Candidate antivial peptides are further characterized in model systems such as wood chuck tissue culture and animal systems, prior to testing on humans.


23. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Simian Mason-Pfizer Monkey Virus

The results depicted herein illustrate the results of search motifs conducted on the Simian Mason-Pfizer monkey virus. The motifs reveal DP178/DP107 analogs within the enveloped (TM) protein GP20, as shown in FIG. 36.


The 107x178x4 motifs identifies a region at amino acid residues 422-470. The ALLMOTI5 finds a region at amino acid residues 408-474. The Lupas program predicted a coiled-coil structure a amino acids 424-459.


24. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs in Bacterial Proteins

The results presented herein demonstrate the identification of DP178/DP107 analogs corresponding to sequences present in proteins of a variety of bacterial species.



FIG. 37 depicts the search motif results for the Pseudomonas aeruginosa fimbrial protein (Pilin). Two regions were identified by motifs 107x178x4 and ALLMOTI5. The regions located at amino acid residues 30-67 and 80-144 were identified by the 107x178x4 motif. The regions at amino acid residues 30-68 and 80-125 were identified by the ALLMOTI5.



FIG. 38 depicts the search motif results for the Pseudomonas gonorrhoeae fimbrial protein (Pilin). A single region was identified by both the 107x178x4 and the ALLMOTI5 motifs. The region located at amino acid residues 66-97 was identified by the 107x178x4 motif. The region located at amino acid residues 66-125 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.



FIG. 39 depicts the search motif results for the Hemophilus Influenza fimbrial protein (Pilin). A single region was identified by both the 107x178x4 and the ALLMOTI5 motifs. The region located at amino acid residues 102-129 was identified by the 107x178x4 motif. The region located at amino acid residues 102-148 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.



FIG. 40 depicts the search motif results for the Staphylococcus aureus toxic shock syndrome Hemophilus Influenza fimbrial protein (Pilin). A single region was identified by both the 107x178x4 and the ALLMOTI5 motifs. The region located at amino acid residues 102-129 was identified by the 107x178x4 motif. The region located at amino acid residues 102-148 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.



FIG. 41 summarizes the motif search results conducted on the Staphylococcus aureus enterotoxin Type E protein. These results demonstrate the successful identification of DP178/DP107 analogs corresponding to peptide sequences within this protein, as described below.


The ALLMOTI5 motif identified a region at amino acid residues 22-27. The 107x178x4 motif identified two regions, with the first at amino acid residues 26-69 and the second at 88-115. A P12LZIPC motif search identified two regions, at amino acid residues 163-181 and 230-250.


The Lupas program predicted a region with a high propensity for coiling at amino acid residues 25-54. This sequence is completely contained within the first region identified by both ALLMOTI5 and 107x178x4 motifs.



FIG. 42 depicts the search motif results conducted on a second Staphylococcus aureus toxin, enterotoxin A. Two regions were identified by the ALLMOTI5 motif, at amino acid residues 22-70 and amino acid residues 164-205. The 107x178x4 motif found two regions, the first at amino acid residues 26-69 and the second at amino acid residues 165-192. A P23LZIPC motif search revealed a region at amino acid residues 216-250. No coiled-coil regions were predicted by the Lupas program.



FIG. 43 shows the motif search results conducted on the E. coli heat labile enterotoxin A protein, demonstrating that identification of DP178/DP107 analogs corresponding to peptides located within this protein. Two regions were identified by the ALLMOTI5 motif, with the first residing at amino acid residues 55-115, and the second residing at amino acid residues 216-254. The 107x178x4 motif identified a single region at amino acid residues 78-105. No coiled-coil regions were predicted by the Lupas program.


25. EXAMPLE
Computer-assisted Identification of DP178/DP107 Analogs Within Various Human Proteins

The results presented herein demonstrate the identification of DP178/DP107 analogs corresponding to peptide sequences present within several different human proteins.



FIG. 44 illustrates the search motif results conducted on the human c-fos oncoprotein. The ALLMOTI5 motif identified a single region at amino acid residues 155-193. The 107x178x4 motif identified one region at amino acid residues 162-193. The Lupas program predicted a region at amino acid residues 148-201 to have coiled-coil structure.



FIG. 45 illustrates the search motif results conducted on the human lupus KU autoantigen protein P70. The ALLMOTI5 motif identified a single region at amino acid residues 229-280. The 107x178x4 motif identified one region at amino acid residues 235-292. The Lupas program predicted a region at amino acid residues 232-267 to have coiled-coil structure.



FIG. 46 illustrates the search motif results conducted on the human zinc finger protein 10. The ALLMOTI5 motif identified a single region at amino acid residues 29-81. The 107x178x4 motif identified one region at amino acid residues 29-56. A P23LZIPC motif search found a single region at amino acid residues 420-457. The Lupas program predicted no coiled-coil regions.


26. EXAMPLE
Potential Measles Virus DP178/DP107 Analogs: CD and Antiviral Characterization

In the Example presented herein, measles (MeV) virus DP178-like peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 21, above, are tested for anti-MeV activity. Additionally, circular dichroism (CD) structural analyses are conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that none of the these peptides exhibit a substantial helical character.


26.1 Materials and Methods

Structural analyses: The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptide concentrations were determined from A280 using Edlehoch's method (1967, Biochemistry 6:1948).


Anti-MeV antiviral activity syncytial reduction assay: The assay utilized herein tested the ability of the peptides to disrupt the ability of Vero cells acutely infected with MeV (i.e., cells which are infected with a multiplicity of infection of 2-3) to fuse and cause syncytial formation on a monolayer of an uninfected line of Vero cells. The more potent the peptide, the lower the observed level of fusion, the greater the antiviral activity of the peptide.


Uninfected confluent monolayers of Vero cells were grown in microtiter wells in 10% FBS EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 10%, antibiotics/antimycotics (Bio Whittaker Cat. No. 17-602E) added at 1%, and glutamine added at 1%.


To prepare acutely infected Vero cells for addition to the uninfected cells, cultures of acutely infected Vero cells were washed twice with HBSS .(Bio Whittaker Cat. No. 10-543F) and cell monolayers were removed with trypsin (Bio Whittaker Cat. No. 17-161E). Once cells detached, media was added, any remaining clumps of cells were dispersed, and hemacytometer cell counts were performed.


The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Vero cells, then adding peptides (at the dilutions described below) in 10% FBS EMEM, and 50-100 acutely MeV-infected Vero cells per well. Wells were then incubated at 37° C. for a maximum of 18 hours.


On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed twice with water immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.


Anti-MeV antiviral activity plaque reduction assay: The assay utilized herein tested the ability of the peptides to disrupt the ability of MeV to infect permissive, uninfected Vero cells, leading to the infected cells' fusing with uninfected cells to produce syncytia. The lower the observed level of syncytial formation, the greater the antiviral activity of the peptide.


Monolayers of uninfected Vero cells are grown as described above.


The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Vero cells, then adding peptides (at the dilutions described below) in 10% FBS EMEM, and MeV stock virus at a final concentration of 30 plaque forming units (PFU) per well. Wells were then incubated at 37° C. for a minimum of 36 hours and a maximum of 48 hours.


On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed twice with water immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.


Peptides: The peptides characterized in the study presented herein were peptides T-252A0 to T-256A0, T-257B1/C1, and T-258B1 to T-265B0, and T-266A0 to T-268A0, as shown in FIG. 47. These peptides represent a walk through the DP178-like region of the MeV fusion protein.


Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used.


26.2 Results

The data summarized in FIG. 47 represents antiviral and structural information obtained via “peptide walks” through the DP178-like region of the MeV fusion protein.


As shown in FIG. 47, the MeV DP178-like peptides exhibited a range of antiviral activity as crude peptides. Several of these peptides were chosen for purification and further antiviral characterization. The IC50 values for such peptides were determined, as shown in FIG. 47, and ranged from 1.35 μg/ml (T-257B1/C1) to 0.072 μg/ml (T-265B1). None of the DP178-like peptides showed, by CD analysis, a detectable level of helicity.


Thus, the computer assisted searches described, hereinabove, as in for example, the Example presented in Section 9, for example, successfully identified viral peptide domains that represent highly promising anti-MeV antiviral compounds.


27. EXAMPLE
Potential SIV DP178/DP107 Analogs: Antiviral Characterization

In the Example presented herein, simian immunodeficiency virus (SIV) DP178-like peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9, 12 and 19, above, were tested for anti-SIV activity. It is demonstrated that several of the identified peptides exhibit potent antiviral capability.


27.1 Materials and Methods

Anti-SIV antiviral assays: The assay utilized herein were as reported in Langolis et al. (Langolis, A. J. et al., 1991, AIDS Research and Human Retroviruses 7:713-720).


Peptides: The peptides characterized in the study presented herein were peptides T-391 to T-400, as shown in FIG. 48. These peptides represent a walk through the DP178-like region of the SIV TM protein.


Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used.


27.2 Results

The data summarized in FIG. 48 represents antiviral information obtained via “peptide walks” through the DP178-like region of the SIV TM protein.


As shown in FIG. 48, peptides T-391 to T-400 were tested and exhibited a potent antiviral activity as crude peptides.


Thus, the computer assisted searches described, hereinabove, as in for example, the Example presented in Section 9, for example, successfully identified viral peptide domains that represent highly promising anti-SIV antiviral compounds.


28. EXAMPLE
Anti-Viral Activity of DP107 and DP-178 Peptide Truncations and Mutations

The Example presented in this Section represents a study of the antiviral activity of DP107 and DP178 truncations and mutations. It is demonstrated that several of these DP107 and DP178 modified peptides exhibit substantial antiviral activity.


28.1 Materials and Methods

Anti-HIV assavs: The antiviral assays performed were as those described, above, in Section 6.1. Assays utilized HIV-1/IIIb and/or HIV-2 NIHZ isolates. Purified peptides were used, unless otherwise noted in FIGS. 49A-C.


Peptides: The peptides characterized in the study presented herein were:

    • 1) FIGS. 49A-C present peptides derived from the region around and containing the DP178 region of the HIV-1 BRU isolate. Specifically, this region spanned from gp41 amino acid residue 615 to amino acid residue 717. The peptides listed contain truncations of this region and/or mutations which vary from the DP178 sequence amino acid sequence. Further, certain of the peptides have had amino- and/or carboxy-terminal groups either added or removed, as indicated in the figures; and
    • 2) FIG. 50. presents peptides which represent truncations of DP107 and/or the gp41 region surrounding the DP107 amino acid sequence of HIV-1 BRU isolate. Certain of the peptides are unblocked or biotinylated, as indicated in the figure.


Blocked peptides contained an acyl N-terminus and an amido C-terminus.


28.2 Results

Anti-HIV antiviral data was obtained with the group 1 DP178-derived peptides listed in FIGS. 49A-C. The full-length, non-mutant DP178 peptide (referred to in FIGS. 49A-C as T20) results shown are for 4 ng/ml.


In FIG. 49A, a number of the DP178 truncations exhibited a high level of antiviral activity, as evidenced by their low IC50 values. These include, for example, test peptides T-50, T-624, T-636 to T-641, T-645 to T-650, T-652 to T-654 and T-656. T-50 represents a test peptide which contains a point mutation, as indicated by the residue's shaded background. The HIV-1-derived test peptides exhibited a distinct strain-specific antiviral activity, in that none of the peptides tested on the HIV-2 NIHZ isolate demonstrated appreciable antti-HIV-2 antiviral activity.


Among the peptides listed in FIG. 49B, are test peptides representing the amino (T-4) and carboxy (T-3) terminal halves of DP178 were tested. The amino terminal peptide was not active (IC50>400 μg/ml) whereas the carboxy terminal peptide showed potent antiviral activity (IC50=3 μg/ml). A number of additional test peptides also exhibited a high level of antiviral activity. These included, for example, T-61/T-102, T-217 to T-221, T-235, T-381, T-677, T-377, T-590, T-378, T-591, T-271 to T-272, T-611, T-222 to T-223 and T-60/T-224. Certain of the antiviral peptides contain point mutations and/or amino acid residue additions which vary from the DP178 amino acid sequence.


In FIG. 49C, point mutations and/or amino and/or carboxy-terminal modifications are introduced into the DP178 amino acid sequence itself. As shown in the figure, the majority of the test peptides listed exhibit potent antiviral activity.


Truncations of the DP107 peptide (referred to in IG. 50 as T21) were also produced and tested, as shown in FIG. 50. FIG. 50 also presents data concerning blocked and unblocked peptides which contain additional amino acid residues from the gp41 region in which the DP107 sequence resides. Most of these peptides showed antiviral activity, as evidenced by their low IC50 values.


Thus, the results presented in this Section demonstrate that not only do the full length DP107 and DP178 peptides exhibit potent antiviral activity, but truncations and/or mutant versions of these peptides can also possess substantial antiviral character.


29: EXAMPLE
Potential Epstein-Barr DP178/DP107 Analogs: Antiviral Characterization

In the Example presented herein, peptides derived from the Epstein-Barr (EBV) DP-178/DP107 analog region of the Zebra protein identified, above, in the Example presented in Section 20 are described and tested for anti-EBV activity. It is demonstrated that among these peptides are ones which exhibit potential anti-viral activity.


29.1 Materials and Methods

Electrophoretic Mobility Shift Assays (EMSA): Briefly, an EBV Zebra protein was synthesized utilizing SP6 RNA polymerase in vitro transcription and wheat germ in vitro translation systems (Promega Corporation recommendations; Butler, E. T. and Chamberlain, M. J., 1984, J. Biol. Chem. 257:5772; Pelham, H. R. B. and Jackson, R. J., 1976, Eur. J. Biochem. 67:247). The in vitro translated Zebra protein was then preincubated with increasing amounts of peptide up to 250 ng/ml prior to the addition of 10,000 to 20,000 c.p.m. of a 32P-labeled Zebra response element DNA fragment. After a 20 minute incubation in the presence of the response element, the reaction was analyzed on a 4% non-denaturing polyacrylamide gel, followed by autoradiography, utilizing standard gel-shift procedures. The ability of a test peptide to prevent Zebra homodimer DNA binding was assayed by the peptide's ability to abolish the response element gel migration retardation characteristic of a protein-bound nucleic acid molecule.


Peptides: The peptides characterized in this study represent peptide walks through the region containing, and flanked on both sides by, the DP178/DP107 analog region identified in the Example presented in Section 20, above, and shown as shown in FIG. 33. Specifically, the peptide walks covered the region from amino acid residue 173 to amino acid residue 246 of the EBV Zebra protein.


Each of the tested peptides were analyzed at a range of concentrations, with 150 ng/ml being the lowest concentration at which any of the peptides exerted an inhibitory effect.


29.2 Results

The EBV Zebra protein transcription factor contains a DP178/pP107 analog region, as demonstrated in the Example presented, above, in Section 20. This protein appears to be the primary factor responsible for the reactivation capability of the virus. A method by which the DNA-binding function of the Zebra virus may be abolished may, therefore, represent an effective antiviral technique. In order to identify potential anti-EBV DP178/DP107 peptides, therefore, peptides derived from the region identified in Section 20, above, were tested for their ability to inhibit Zebra protein DNA binding.


The test peptides' ability to inhibit Zebra protein DNA binding was assayed via the EMSA assays described, above, in Section 28.1. The data summarized in FIGS. 51A-B presents the results of EMSA assays of the listed EBV test peptides. These peptides represent one amino acid “walks” through the region containing, and flanked on both sides by, the DP178/DP107 analog region identified in the Example presented in Section 20, above, and shown as shown in FIG. 33. As shown in FIGS. 51A-B, the region from which these peptides are derived lies from EBV Zebra protein amino acid residue 173 to 246. A number of the test peptides which were assayed exhibited an ability to inhibit Zebra protein homodimer DNA binding, including 439, 441, 444 and 445.


Those peptides which exhibit an ability to inhibit Zebra protein DNA binding represent potential anti-EBV antiviral compounds whose ability to inhibit EBV infection can be further characterized.


The present invention is not to be limited in scope by the specific embodiments described which are intended as single illustrations of individual aspects of the invention, and functionally equivalent methods and components are within the scope of the invention. Indeed, various modifications of the invention, in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and accompanying drawings. Such modifications are intended to fall within the scope of the appended claims.

Claims
  • 1. A method for the inhibition of transmission of a parainfluenza virus to a cell, comprising contacting the cell with an effective concentration of an isolated peptide consisting of an amino acid sequence of a 16 to 39 amino acid residue region of a parainfluenza virus protein for an effective period of time; wherein said region is identified by an ALLMOTI15, 107x178x4, or PLZIP sequence search motif; wherein said peptide further comprises an amino terminal X, and a carboxy terminal Z in which: X comprises an amino group, an acetyl group, a 9-fluorenylmethoxy-carbonyl group, a hydrophobic group, or a macromolecular carrier group; and Z comprises a carboxyl group, an amido group, a hydrophobic group, or a macromolecular carrier group;
  • 2. A method for the inhibition of transmission of parainfluenza virus to a cell, comprising contacting the cell with an effective concentration of a peptide for an effective period of time; wherein the peptide has the formula: X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRSN-Z (SEQ ID NO. 33); X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRSNQ-Z (SEQ ID NO. 34); X-NNSVALDPIDISIELNKAKSDLEESKEWIRRSNQK-Z (SEQ ID NO. 35); X-NSVALDPIDISIELNKAKSDLEESKEWIRRSNQKL-Z (SEQ ID NO. 36); X-SVALDPIDISIELNKAKSDLEESKEWIRRSNQKLD-Z (SEQ ID NO. 37); X-VALDPIDISIELNKAKSDLEESKEWIRRSNQKLDS-Z (SEQ ID NO. 38); X-ALDPIDISIELNKAKSDLEESKEWIRRSNQKLDSI-Z (SEQ ID NO. 39); X-LDPIDISIELNKAKSDLEESKEWIRRSNQKLDSIG-Z (SEQ ID NO. 40); X-DPIDISIELNKAKSDLEESKEWIRRSNQKLDSIGN-Z (SEQ ID NO. 41); X-PIDISIELNKAKSDLEESKEWIRRSNQKLDSIGNW-Z (SEQ ID NO. 42); X-IDISIELNKAKSDLEESKEWIRRSNQKLDSIGNWH-Z (SEQ ID NO. 43); X-DISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQ-Z (SEQ ID NO. 44); X-ISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQS-Z (SEQ ID NO. 45); X-SIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSS-Z (SEQ ID NO. 46); X-IELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSST-Z (SEQ ID NO. 47); X-ELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSSTT-Z (SEQ ID NO. 48); X-TAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQS-Z (SEQ ID NO. 49); X-AVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSI-Z (SEQ ID NO. 50); X-LVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNL-Z (SEQ ID NO. 51); X-VEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLI-Z (SEQ ID NO. 52); X-EAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIV-Z (SEQ ID NO. 53); X-AKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVA-Z (SEQ ID NO. 54); X-KQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAI-Z (SEQ ID NO. 55); X-QARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-Z (SEQ ID NO. 56); X-ARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKS-Z (SEQ ID NO. 57); X-RSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSV-Z (SEQ ID NO. 58); X-SDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQ-Z (SEQ ID NO. 59); X-KLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVN-Z (SEQ ID NO. 60); X-LKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNK-Z (SEQ ID NO. 61); or X-AIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKEIV-Z (SEQ ID NO. 62),  in which: amino acid residues are presented by the single-letter code; X comprises an amino group, an acetyl group, a 9-fluorenylmethoxy-carbonyl group, a hydrophobic group, or a macromolecular carrier group; Z comprises a carboxyl group, an amido group, a hydrophobic group, or a macromolecular carrier group;
  • 3. The method of claim 2, wherein the peptide has the formula: X-IDISIELNKAKSDLEESKEWIRRSNQKLDSIGNWH-Z (SEQ ID NO. 43).
  • 4. The method of claim 2, wherein the peptide has the formula: X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRSN-Z (SEQ ID NO. 33).
  • 5. The method of claim 2, wherein the peptide has the formula: X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRSNQ-Z (SEQ ID NO. 34).
  • 6. The method of claim 2, wherein the peptide has the formula: X-NNSVALDPIDISIELNKAKSDLEESKEWIRRSNQK-Z (SEQ ID NO. 35).
  • 7. The method of claim 2, wherein the peptide has the formula: X-NSVALDPIDISIELNKAKSDLEESKEWIRRSNQKL-Z (SEQ ID NO. 36).
  • 8. The method of claim 2, wherein the peptide has the formula: X-SVALDPIDISIELNKAKSDLEESKEWIRRSNQKLD-Z (SEQ ID NO. 37).
  • 9. The method of claim 2, wherein the peptide has the formula: X-VALDPIDISIELNKAKSDLEESKEWIRRSNQKLDS-Z (SEQ ID NO. 38).
  • 10. The method of claim 2, wherein the peptide has the formula: X-ALDPIDISIELNKAKSDLEESKEWIRRSNQKLDSI-Z (SEQ ID NO. 39).
  • 11. The method of claim 2, wherein the peptide has the formula: X-LDPIDISIELNKAKSDLEESKEWIRRSNQKLDSIG-Z (SEQ ID NO. 40).
  • 12. The method of claim 2, wherein the peptide has the formula: X-DPIDISIELNKAKSDLEESKEWIRRSNQKLDSIGN-Z (SEQ ID NO. 41).
  • 13. The method of claim 2, wherein the peptide has the formula: X-PIDISIELNKAKSDLEESKEWIRRSNQKLDSIGNW-Z (SEQ ID NO. 42).
  • 14. The method of claim 2, wherein the peptide has the formula: X-DISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQ-Z (SEQ ID NO. 44).
  • 15. The method of claim 2, wherein the peptide has the formula: X-ISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQS-Z (SEQ ID NO. 45).
  • 16. The method of claim 2, wherein the peptide has the formula: X-SIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSS-Z (SEQ ID NO. 46).
  • 17. The method of claim 2, wherein the peptide has the formula: X-IELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSST-Z (SEQ ID NO. 47).
  • 18. The method of claim 2, wherein the peptide has the formula: X-ELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSSTT-Z (SEQ ID NO. 48).
  • 19. The method of claim 2, wherein the peptide has the formula: X-TAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQS-Z (SEQ ID NO. 49).
  • 20. The method of claim 2, wherein the peptide has the formula: X-AVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSI-Z (SEQ ID NO. 50).
  • 21. The method of claim 2, wherein the peptide has the formula: X-LVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNL-Z (SEQ ID NO. 51).
  • 22. The method of claim 2, wherein the peptide has the formula: X-VEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLI-Z (SEQ ID NO. 52).
  • 23. The method of claim 2, wherein the peptide has the formula: X-EAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIV-Z (SEQ ID NO. 53).
  • 24. The method of claim 2, wherein the peptide has the formula: X-AKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVA-Z (SEQ ID NO. 54).
  • 25. The method of claim 2, wherein the peptide has the formula: X-KQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAI-Z (SEQ ID NO. 55).
  • 26. The method of claim 2, wherein the peptide has the formula: X-QARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-Z (SEQ ID NO. 56).
  • 27. The method of claim 2, wherein the peptide has the formula: X-ARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKS-Z (SEQ ID NO. 57).
  • 28. The method of claim 2, wherein the peptide has the formula: X-RSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSV-Z (SEQ ID NO. 58).
  • 29. The method of claim 2, wherein the peptide has the formula: X-SDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQ-Z (SEQ ID NO. 59).
  • 30. The method of claim 2, wherein the peptide has the formula: X-KLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVN-Z (SEQ ID NO. 60).
  • 31. The method of claim 2, wherein the peptide has the formula: X-LKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNK-Z (SEQ ID NO. 61).
  • 32. The method of claim 2, wherein the peptide has the formula: X-AIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKEIV-Z (SEQ ID NO. 62).
  • 33. The method of claim 1, wherein the region of the parainfluenza virus protein is a region of 28 amino acid residues identified by the ALLMOTI5 motif.
  • 34. The method of claim 1, wherein the region of the parainfluenza virus protein is a region of 35 amino acid residues identified by the ALLMOTI5 motif.
  • 35. The method of claim 1, wherein the region of the parainfluenza virus protein is a region of 28 amino acid residues identified by the 107x178x4 motif.
  • 36. The method of claim 1, wherein the region of the parainfluenza virus protein is a region of 35 amino acid residues identified by the 107x178x4 motif.
  • 37. The method of claim 1, wherein the region of the parainfluenza virus protein is identified by a PLZIP motif.
  • 38. The method of claim 1 wherein X is an acetyl group.
  • 39. The method of claim 1 wherein Z is an amido group.
  • 40. The method of claim 1 wherein X is an acetyl group; and Z is an amido group.
  • 41. The method of claim 1 wherein X is a macromolecular carrier group.
  • 42. The method of claim 41 wherein the macromolecular carrier group X is a peptide group.
  • 43. The method of claim 42 wherein the peptide group is 2 to 50 parainfluenza virus protein amino acid residues amino to the region of the parainfluenza virus protein identified by the ALLMOTI5, 107x178x4 or PLZIP sequence search motif.
  • 44. The method of claim 1 wherein Z is a macromolecular carrier group.
  • 45. The method of claim 44 wherein the macromolecular carrier group Z is a peptide group.
  • 46. The method of claim 45 wherein the peptide group is about 2 to about 50 parainfluenza virus protein amino acid residues carboxy to the region of the parainfluenza virus protein identified by the ALLMOTI5, 107x178x4 or PLZIP sequence search motif.
  • 47. The method of claim 46 wherein X is a macromolecular carrier group, said macromolecular carrier group X being a peptide group of 2 to 50 parainfluenza virus protein amino acid residues amino to the region of the parainfluenza virus protein identified by the ALLMOTI5, 107x 178x4 or PLZIP sequence search motif.
  • 48. The method of claim 2 wherein X is an acetyl group.
  • 49. The method of claim 2 wherein Z is an amido group.
  • 50. The method of claim 2 wherein X is an acetyl group; and Z is an amido group.
Parent Case Info

This is a division of application Ser. No. 08/470,896, filed Jun. 6, 1995, which is a continuation-in-part of Ser. No. 08/360,107, filed Dec. 20, 1994, now U.S. Pat. No. 6,017,536 which is a continuation-in-part of Ser. No. 08/255,208, filed Jun. 7, 1994, which is a continuation-in-part of Ser. No. 08/073,028, filed Jun. 7, 1993, now U.S. Pat. No. 5,464,933 each of which is incorporated by reference in its entirety.

Government Interests

This invention was made with Government support under Grant No. AI-30411-02 awarded by the National Institutes of Health. The Government has certain rights in the invention.

US Referenced Citations (4)
Number Name Date Kind
4659669 Kleid et al. Apr 1987 A
4707358 Kieff et al. Nov 1987 A
5116725 Vaughan et al. May 1992 A
5141867 Ivanoff et al. Aug 1992 A
Foreign Referenced Citations (8)
Number Date Country
0323157 Dec 1988 EP
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Divisions (1)
Number Date Country
Parent 08470896 Jun 1995 US
Child 08484741 US
Continuation in Parts (3)
Number Date Country
Parent 08360107 Dec 1994 US
Child 08470896 US
Parent 08255208 Jun 1994 US
Child 08360107 US
Parent 08073028 Jun 1993 US
Child 08255208 US