Methods and compositions to alter the cell surface expression of phosphatidylserine and other clot-promoting plasma membrane phospholipids

Abstract

A protein preparation that mediates Ca+2 transbilayer movement of phospholipid is disclosed. Additionally, a modified or mutated protein preparation, wherein the protein has a reduced ability to mediate transbilayer movement, is disclosed. In a preferred form of the invention, the protein has been modified such that post-translational modification can no longer occur.

Description

BACKGROUND OF THE INVENTION

The exposure of phosphatidylserine (PS) and other aminophospholipids (aminoPL) on the surface of activated or injured blood cells and endothelium is thought to play a key role in the initiation and regulation of blood coagulation. De novo surface exposure of aminophospholipids has also been implicated in the activation of both complement and coagulation systems after tissue injury, and in removal of injured or apoptotic cells by the reticuloendothelial system. Although migration of these phospholipids (PL)from inner-to-outer plasma membrane leaflets is known to be triggered by elevated intracellular [Ca 2+ ] ([Ca 2+ ] c ) and to be associated with vesicular blebbing of the cell surface, little is known about the cellular constituents that participate in this process.

As described in Ser. No. 08/790,186, cell surface PS has a role in coagulation, programmed cell death and clearance by the reticuloendothelial system. Ser. No. 08/790,186 also describes regulation of the transmembrane distribution of PS, the role of calcium in the collapse of phospholipid asymmetry, and the role PL translocation in Scott Syndrome.

Bassè, et al. and Stout, et al. recently reported the purification and preliminary characterization of an integral RBC membrane protein that, when reconstituted in liposomes, mediates a Ca 2+ -dependent transbilayer movement of PL mimicking plasma membrane PL reorganization evoked upon elevation of [Ca 2+ ] c (F. Bassè, et al., J. Biol. Chem. 271:17205-17210, 1996; J. G. Stout, et al., J. Clin. Invest. 99:2232-2238, 1997). Evidence that a protein of similar function must also be present in platelets was recently reported by Comfurius, et al. (P. Comfurius, et al., Biochemistry 35:7631-7634, 1996).

Needed in the art is a method for modulating the activity of phospholipid scramblase within a cell, organ or tissue in which one wishes either to reduce the potential for thrombosis, clot formation, or cell clearance (by decreasing cellular PL scramblase expression or activity) or to promote hemostasis or cell clearance (by increasing cellular PL scramblase expression or activity).

BRIEF SUMMARY OF THE INVENTION

The present invention relates to the creation and use of antithrombotic and thrombostatic reagents that rely on the properties of a protein preparation that mediates Ca 2+ -dependent transbilayer movement of membrane phospholipids.

In one embodiment, the present invention is a preparation of a plasma membrane phospholipid scramblase (“PL scramblase”). Preferably, the protein is approximately 35-37 kD as measured on a 12.5% SDS-polyacrylamide gel under reducing conditions. In a most preferred form of this invention, the preparation is a human or a mouse PL scramblase.

In one preferred embodiment of the present invention, the PL scramblase comprises SEQ ID NO:2, representing human PL scramblase, possibly with conservative or functionally equivalent substitutions.

In the most preferred embodiment of the present invention, the PL scramblase, preferably comprising SEQ ID NO:2, has been modified by the action of mammalian cellular enzymes to covalently incorporate phosphorous at one or more Thr, Ser, or Tyr residues or a fatty acid, preferably palmitate, at a cysteine residue.

The present invention is also a preparation of a murine cell protein, wherein the protein is a plasma membrane phospholipid scramblase, preferably wherein the protein is approximately 35 kD as measured on a 12.5% SDS-polyacrylamide gel under reducing conditions.

In one preferred embodiment of the present invention, the murine PL scramblase comprises SEQ ID NO:4, possibly with conservative or functionally equivalent substitutions.

In the most preferred embodiment of the present invention, the murine PL scramblase comprising SEQ ID NO:4 has been modified by the action of mammalian cellular enzymes to covalently incorporate phosphorous one or more Thr, Ser, or Tyr residues, and a fatty acid, preferably palmitate, at a cysteine residue.

The present invention is also a DNA sequence encoding the PL scramblase. Preferably, this DNA sequence comprises SEQ ID NO:1. Most preferably, this DNA sequence comprises residues 211-1164 of SEQ ID NO:1.

The present invention is also a DNA sequence encoding the murine PL scramblase. Preferably, this DNA sequence comprises SEQ ID NO:3. Most preferably, the DNA sequence comprises residues 192-1112 of SEQ ID NO:3.

In another embodiment, the present invention is a method of preventing the surface exposure of plasma membrane phospholipids and reducing the procoagulant properties of a cell by delivering to the cell a mutant phospholipid scramblase. This scramblase is preferably mutated at a site of post-translational modification, most preferably the site is selected from the group consisting of Asp273-Asp284, Thr161 and Cys297 of human PL scramblase SEQ ID NO:2 or the corresponding conserved residues in mouse or other mammalian PL scramblase.

In one embodiment, a gene construct encoding a mutant phospholipid scramblase is delivered to the cell. In an alternative embodiment, the mutant protein itself is delivered.

The present invention is also an inhibitor of the PL scramblase activity of PL scramblase. This inhibitor may be an antisense nucleotide derived from the DNA sequence of PL scramblase. In another embodiment, the inhibitor is a peptide sequence that is a competitive inhibitor of PL scramblase activity. In another embodiment, the inhibitor is an antibody, preferably a monoclonal antibody, raised against PL scramblase.

In another embodiment, the inhibitor works by modifying or inhibiting the post-translational modifications of the PL scramblase that are disclosed below in the Examples. For example, analysis of the primary PL scramblase sequence reveals a potential site of phosphorylation by protein kinase C or other cellular kinase (Thr161), a potential site for acylation by fatty acid (Cys297), and a potential binding site for Ca 2+ ion provided by an EF-hand-like loop spanning residues Asp273-Asp284. These residues and motifs are conserved in the mouse PL scramblase.

In one embodiment, the inhibitor is a compound that prevents thioacylation of the protein.

In another embodiment, a mutant phospholipid scramblase is provided in which cysteine residues, preferably Cys297 of SEQ ID NO:2 (or the equivalent residue in the conserved region of another PL scramblase), have been replaced by alanine or other non-conservative substitution.

The present invention is also a method for preventing the surface exposure of plasma membrane phosphatidylserine, phosphatidylethanolamine and cardiolipin on the surface of in vitro stored leukocytes, lymphocytes, platelets or red blood cells. This method comprises the steps of adding an inhibitor of PL scramblase activity to the stored blood cells.

The present invention is also a method for prolonging survival of transplanted organs comprising the step of adding an inhibitor of PL scramblase activity to an organ perfusate during in vitro organ storage. The present invention is also a method for prolonging the survival of transplanted cells, tissues, and organs by genetically engineering the cells to be transplanted so as to alter their expression of plasma membrane PL scramblase in order to reduce exposure of PS and other thrombogenic phospholipids at the plasma membrane surface, thereby reducing the risk of infarction due to fibrin clot formation.

The present invention is also a method for prolonging the in vivo survival of circulating blood cells (erythrocyte, platelets, lymphocyte, PMN's, and monocytes) comprising the step of preventing surface exposure of plasma membrane phosphatidylserine on the surface of the cells by exposing the blood cells to an inhibitor of PL scramblase activity.

The present invention is also a method for preventing the procoagulant activities of erythrocytes in sickle cell disease comprising the step of inhibiting erythrocyte PL scramblase in a sickle cell patient.

The present invention is also a method for treating autoimmune and inflammatory diseases comprising the step of treating a patient with an inhibitor of the PL scramblase activity of PL scramblase.

The present invention is also a method for diagnosing individuals with reduced or elevated capacity for platelet-promoted or erythrocyte-promoted fibrin clot activity comprising the step of quantifying the cellular expression of PL scramblase. This quantitation may take the form of immunoblotting using an antibody to PL scramblase, an ELISA assay using an antibody to PL scramblase, flow cytometric analysis of the binding of monoclonal antibody reactive against the predicted extracellular domain of PL scramblase (residues Ser310-Tryp318 of sequence disclosed in SEQ ID NO:2 or the equivalent residue in the conserved region of another PL scramblase) or using oligonucleotides derived from PL scramblase cDNA and the polymerase chain reaction. In one method of the present invention, the quantitation is performed by isolating PL scramblase from a patient blood sample, measuring the amount of PL scramblase isolated and comparing the measurement with a control sample. The measurement may be by isolating PL scramblase from a patient blood sample and measuring via densitometry the amount of PL scramblase protein electrophoresed in a stained electrophoretic gel.

It is an object of the present invention to provide a preparation of a PL scramblase.

It is another object of the present invention to genetically alter the level of expression of PL scramblase by delivery of cDNA representing sense or antisense nucleotide sequence ligated into a suitable mammalian expression vector.

It is another object of the present invention to provide an inhibitor of PL scramblase PL scramblase activity.

It is another object of the present invention to provide an antithrombotic agent.

It is another object of the present invention to create cells, tissue, and organs for transplantation that have increased potential for survival and reduced potential for causing fibrin clot formation and vascular thrombosis when grafted into a recipient host.

It is another object of the present invention to create an animal, preferably a mouse or pig, that has been genetically engineered so that the PL scramblase gene is not expressed.

Other objects, advantages and features of the present invention will become apparent after one of skill in the art reviews the specification, claims and drawings herein.

BRIEF DESCRIPTION OF THE SEVERAL VIEWS OF THE DRAWINGS

FIGS. 1A and 1B is a comparison of the cDNA and deduced amino acid sequence of human PL scramblase (SEQ ID NOs:1 and 2).

FIGS. 1C and 1D is a comparison of the cDNA and deduced amino acid sequence of murine PL scramblase (SEQ ID NOs:3 and 4).

FIG. 2 is a bar graph illustrating immunoprecipitation of erythrocyte PL scramblase.

FIG. 3 is a graph of an activity assay of recombinant PL scramblase.

FIG. 4 is an immunoblot of PL scramblase in human erythrocytes and platelets.

FIGS. 5A and 5B is a comparison of protein sequences of mouse and human PL scramblase (SEQ ID NOs:2 and 4).

FIG. 6 is a bar graph of PL scramblase activity as a function of mutational analysis of a putative EF hand loop motif contained in human PL scramblase.

FIG. 7 graphs the Ca 2+ dependence of mutant human PL scramblase.

FIG. 8 is a Western blot analysis of PL scramblase protein and corresponding functional assay of PL scramblase activity in various human cell lines.

FIG. 9A and B are fluorescence micrographs of GFP-PL scramblase in transformed Raji cells. FIG. 9A depicts fluorescence of cells expressing GFP; FIG. 9B depicts cells transfected with pEGFP-C2-PL scramblase plasmid and expressing GFP-PL scramblase fusion protein.

FIG. 10 is a graph showing that the level of expression of PL scramblase determines plasma membrane sensitivity to intracellular calcium.

FIG. 11 is a bar graph illustrating inactivation of PL scramblase by hydroxylamine.

DETAILED DESCRIPTION OF THE INVENTION

In the description of the invention presented herein, Applicants specifically refer to numerical residue positions in both the PL scramblase amino acid and nucleotide sequence. These reference numbers refer to the residue position in the amino acid or nucleotide sequence listed in the Sequence Listing. When Applicants use these reference numbers to describe a proposed mutated PL scramblase or nucleic acid, Applicants mean for these reference numbers to refer to the comparable or equivalent residue in that protein or amino acid. For example (see FIGS. 5 A and 5 B), threonine 161 in the human protein sequence (SEQ ID NO:2) is equivalent to threonine 159 in the mouse protein sequence (SEQ ID NO:4). Although these residues have different reference numbers, they are equivalent residues in the two sequences based upon conserved homology in the aligned sequences. One may determine what a “equivalent residue” is in an unknown PL scramblase sequence by deducing the highest probability alignment to the human sequence using BLAST, FASTA or other sequence alignment tool commonly known to those skilled in the art.

1. Protein Preparations and Nucleic Acid Sequences

The Examples below disclose the purification and preliminary characterization of an integral RBC membrane protein that, when reconstituted in liposomes, mediates a Ca 2+ -dependent transbilayer movement of PL mimicking plasma membrane PL reorganization evoked upon elevation of [Ca 2+ ] c . Based on internal peptide sequence obtained from the purified erythrocyte PL scramblase protein, we cloned the cDNA (SEQ ID NO:1) encoding this protein from a human K-562 erythroleukemic library (Q. Zhou, et al., J. Biol. Chem. 272:18240-18244, 1997). The deduced human PL scramblase protein (SEQ ID NO:2) is a single chain polypeptide of 318 amino acids with molecular weight of 35.1 kD and calculated isoelectric point of 4.9. It is predicted to be a type 2 membrane protein with a single transmembrane domain near the carboxyl terminus (residues Ala291-Gly309), a short exoplasmic carboxyl terminal peptide (residues Ser310-Trp318) with the remaining polypeptide (residues Met1-Lys290) in the cytosol.

The present invention involves the purification and characterization of this approximately 35-37 kD membrane protein that promotes a Ca 2+ -dependent transbilayer redistribution of membrane phospholipids including PS and PC, with properties similar to the PL scramblase activity that is evoked upon elevation of Ca 2+ in the cytosol of erythrocytes and other cells. We have named this membrane protein “P37.” We mean for “P37” to be synonymous with “phospholipid scramblase” or “PL scramblase” and refer to these names interchangeably throughout the text. By “phospholipid scramblase” or “PL scramblase activity,” we mean the Ca 2+ dependent transbilayer movement of plasma membrane phospholipid.

In one embodiment, the present invention is a protein preparation of PL scramblase. In preferred embodiments of the present invention, the preparation is of either human or mouse PL scramblase.

If one desires the human PL scramblase, preferably, the protein comprises residues 1-318 of SEQ ID NO:2. More preferably, the PL scramblase comprises residues 85-307 of SEQ ID NO:2, representing only the most highly conserved residues of the human PL scramblase when aligned against murine PL Scramblase (see FIGS. 5 A and 5 B).

If one desires the mouse PL scramblase, preferably, the protein comprises residues 1-307 of SEQ ID NO:4. More preferably, the PL scramblase comprises residues 83-307 of SEQ ID NO:4, representing only the most highly conserved residues of the mouse PL scramblase when aligned against human PL Scramblase (see FIGS. 5 A and 5 B).

In another embodiment, the protein comprises conservative substitutions or functionally equivalent residues of the residues described in the paragraph above. By “functionally equivalent” we mean that the equivalent residues do not inhibit or disrupt the activity of the PL scramblase preparation. A protein with “equivalent” substitutions would have at least a 10%, preferably 50%, activity of a native PL scramblase preparation.

The Examples below demonstrate one method of isolating PL scramblase from human erythrocytes. After examination of the specification below, other methods of protein isolation will become apparent to one of skill in the art. The Examples below also describe an assay for the measurement of PL scramblase activity. A suitable preparation of the present invention would have a PL scramblase activity of at least 10% that of the preparation described below in the Examples. Preferably, the activity would be at least 50% that of the Examples described below.

We specifically envision that one may wish to isolate the PL scramblase from a variety of mammalian sources including human, mouse, pig, or other mammal.

In one embodiment of the invention, the PL scramblase is isolated from erythrocyte membranes. In another embodiment, the protein is isolated from one or more body tissues including, spleen, skin, lung or other organ. In another embodiment, the protein is produced by bacteria cells, such as E. coli cells, insect cells, or yeast, preferably in vitro cultures that are transfected with plasmid or viral vectors containing cDNA sequences identified at SEQ ID NOs:1 or 3 in the correct reading frame. The vector can be chosen from among protein expression vectors known to those skilled in the art. Preferable viral vectors include retrovirus, adenovirus, and baculovirus vectors.

The present invention is also a recombinant DNA sequence encoding PL scramblase. A preferable DNA sequence encoding PL scramblase would comprise the residues of SEQ ID NO:1 (human sequence) or SEQ ID NO:3 (mouse sequence). A more preferable DNA sequence encoding PL scramblase would comprise the nucleic acids 211-1164 of SEQ ID NO:1 or 192-1112 of SEQ ID NO:3. The most preferred DNA sequence encoding PL scramblase would comprise the nucleic acids 463-1137 of SEQ ID NO:1 or 438-1112 of SEQ ID NO:3

One of skill in the art of molecular biology would know how to obtain other DNA sequences encoding the PL scramblase. For example, one might sequence PL scramblase directly via standard protein sequencing techniques. The peptide sequence could be analyzed to provide oligonucleotide probes for a human cDNA leukocyte library. (One such cDNA library is available from Invitrogen in a pCDNA3 vector.)

By use of probes obtained from these and other the PL scramblases, one would then be able to isolate other cDNA clones encoding the entire PL scramblase protein sequence from a species or cell culture of interest. SEQ ID NO:1 contains the entire open reading frame encoding human PL scramblase as well as flanking residues of 5′ and 3′ untranslated sequence. The full-length translation of SEQ ID NO:1 is identified as SEQ ID NO:2. In the cDNA, this translated sequence would normally be followed by the appropriate stop codon.

Based on the nucleotide sequence of human PL scramblase, the Examples below disclose a full-length cDNA for murine PL scramblase from a mouse fibroblast cDNA library (CLONETECH). The resulting cDNA (SEQ ID NO:3) predicts an open reading frame encoding a 307 residue polypeptide (molecular weight 33.9 kDa; calculated pI=4.9) (SEQ ID NO:4). Analysis of the murine PL scramblase protein revealed that it had virtually the same apparent affinity for Ca 2+ and the same activity in promoting transbilayer movement of phospholipids as exhibited by the recombinant human protein.

Alignment of the murine and human PL scramblase proteins reveals 65% overall identity of sequence, with the most divergent sequence found in the amino terminal portion of the protein. The murine carboxyl terminus is truncated, and does not include the predicted exoplasmic domain found in the carboxyl terminus of human PL scramblase. This suggests that residues Ser310-Trp318 in human PL scramblase do not contribute to its function. By contrast, segments of human PL scramblase polypeptide that are implicated to participate in its phospholipid mobilizing function (detailed below), are highly-conserved in the mouse protein. These structural motifs that are conserved in both human and mouse PL scramblase include: a single inside-outside transmembrane domain for membrane attachment (human residues Ala291-Gly309); a potential site of phosphorylation by protein kinase C or other cellular kinase (Thr161 in human); a potential site of thiol-acylation with palmitic acid (Cys297 in human); and a potential binding site for Ca 2+ ion (residues Asp273-Asp284 in human). Based on the best fit alignment of the human and mouse protein sequences reported as SEQ ID NO:2 and SEQ ID NO:4, we deduce that the highly-conserved portions of the polypeptide, representing residues 85-309 of SEQ ID NO:2 of human PL scramblase and residues 83-307 of SEQ ID NO:4 (i.e., the equivalent residues of mouse PL scramblase) contains the portion of the protein required for PL scramblase activity.

The present invention is also a preparation of a modified or mutated PL scramblase wherein the PL scramblase has a reduced ability to mediate transbilayer movement of lipids. By “reduced activity” we mean that the modified scramblase has less than 10% of the activity of the wild-type scramblase. Preferably, this activity is measured by the Ca 2+ dependent movement of fluorescent phospholipids in reconstituted proteoliposomes (see Examples 1 and 2). More preferably, this activity is measured by the intracellular Ca 2+ -dependent movement of PS to the cell surface in cells treated or transfected so as to express a modified or mutated PL scramblase (see Example 3).

Preferably, the protein is modified such that it is no longer post-translationally modified, as described above. Most preferably, the modification occurs at amino acid residue Thr161, Cys297, or Asp273-Asp284.

The present invention is also a recombinant nucleic acid encoding a modified or mutated scramblase.

2. Modulators of PL Scramblase Activity.

The present invention is also a modulator, either an inhibitor or enhancer, of the PL scramblase activity of PL scramblase. The information below in the Examples demonstrates a new understanding of the post-translational modification of PL scramblase that may be used to design methods of modulating PL scramblase activity and mutated PL scramblases with modified scramblase activity. For example, analysis of the primary PL scramblase sequence reveals a potential site of phosphorylation by protein kinase C or other cellular kinase (Thr161), a potential site for acylation by fatty acid (Cys297), and a potential binding site for Ca 2+ ion provided by an EF-hand-like loop spanning residues Asp273-Asp284. Knowledge of these post-translational modifications allows one to design specific inhibitors or modulators of the PL scramblase activity.

Therefore, as elaborated below in sections A, B and C, the present invention is a method of modulating PL scramblase activity by disrupting specific post-translational modifications. In one embodiment, the method comprises exposing a PL scramblase molecule to a post-translational modification inhibitor and, thus, reducing PL scramblase activity. This method will be useful in a variety of applications where reduction of the rate of clearance of a cell from the body or a reduction in clot promoting and procoagulant activities of a cell is desired. Among the post translational modification predicted to alter the activity of PL scramblase include insertion of the protein into phospholipid membranes, phosphorylation of the polypeptide by an intracellular protein kinase at one or more Tyr, Thr, or Ser residues, the addition of palmitate or other fatty acid by thioacylation through formation of a thioester bond at one or more Cys residues in the cytoplasmic or transmembrane domains of the protein, the binding of one or more metal ions to the protein, the aggregation of the protein with itself or one or more cofactors, proteolytic degradation of the protein by one or more cytoplasmic proteases including by example calpains or caspases.

In another embodiment, the method comprises creating a gene construct encoding a modified PL scramblase. The scramblase will be modified at the site of the post-translational modification described above. This modified gene may be used to transfect cells that one wishes to display a reduction of clot promoting or procoagulant activities or to prolong the survival of the cell in the body.

Sections A, B and C below describe specific residues that one may wish to mutate. One of skill in the art would be aware of general molecular biological techniques that would enable one to acquire a PL scramblase gene, create the appropriate mutation, create the appropriate genetic construct, and transform the desired cell line.

In another embodiment, the inhibitor is an antisense nucleotide derived from the DNA sequence encoding PL scramblase. One of skill in the art would know how to create such an antisense nucleotide from the cDNA sequence of PL scramblase.

In another embodiment, the inhibitor is an antibody, preferably a monoclonal antibody, raised against PL scramblase. One of skill in the art would know how to make an antibody preparations from the purified protein preparation described below.

A. Cysteine thioester

Our discovery of the presence of a conserved site for Cys thiol-acylation in the transmembrane domains of human and mouse PL scramblase (Cys297 in human) suggests that PL scramblase polypeptide is post-translationally modified by the attachment of fatty acid, and that this thiol-acylation is required for normal expression of its biological activity. Attachment of fatty acid (predominantly palmitic acid) by acylation of the cysteinyl thiol residue has been shown to regulate the biological activity of a variety of cellular proteins (G. Milligan, et al., Trends Biochem. Sci. 20:181-185, 1995; M. J. Schlesinger, et al., In: Lipid Modification of Proteins, pp. 1-19, CRC Press, Boca Raton, Fla., 1993).

One embodiment of the present invention is a method to prevent egress of PS and other clot-promoting and procoagulant phospholipids to cell surfaces by preventing or reversing the acylation of cysteines in plasma membrane PL scramblase protein. In one embodiment of the present invention, one would create a mutated scramblase, wherein cysteine 297 (or the equivalent residue in the conserved region of another PL scramblase) is no longer available for post-translational modification. This may be by substituting the cysteine with a alanine, serine or another non-functionally equivalent amino acid residue. The cDNA encoding this mutated scramblase may be placed in a vector expression system and used to transfect cells of interest. We envision that the mutated scramblase will out-compete native scramblase and, thus, reduce scramblase activity.

In another embodiment, the method preferably comprises the steps of exposing a PL scramblase to a thiolacylation inhibitor and inhibiting PL scramblase activity. Applicants note that the thiolacylation inhibitor could either inhibit thiolacylation directly, block the site of thiolacylation, or hydrolyze pre-existing thioester-linked fatty acids attached to the protein. Applicants specifically envision that the thiolacylation may be prevented by compounds selected from the class of specific antibodies against the protein that react at the site of thioacylation, thiol-reactive compounds that covalently modify cysteine residues (including by example N-ethyl maleimide, iodoacetamide, or pyridyldithioethylamine), an inhibitor of enzyme acyltransferases including by example an esterase inhibitor chosen from among carbamates (e.g., physostigmine)and organophosphorus (e.g., diisopropylfluorophosphate) compounds that are reactive at the active site of such enzymes. Such a method will be useful for many of the objects described above, such as treating cells, tissues, and organs for transplantation to reduce potential for causing fiber and clot formation in vascular thrombosis when grafted into a recipient host. The method could also be used to provide an antithrombotic therapeutic effect. The method could also be used to increase in vivo survival of the transfused or transplanted cell by suppressing exposure of PS or other aminophospholipids at the cell surface.

B. Peptide residues involved in binding Ca 2+ .

The phospholipid transport function of PL scramblase is activated by Ca 2+ with apparent affinity of 50-100 micromolar, implying a relatively low affinity binding site for the calcium ion within the polypeptide (Q. Zhou, et al., J. Biol. Chem. 272:18240-18244, 1997; J. G. Stout, et al., J. Clin. Invest. 99:2232-2238, 1997; F. Bassè, et al., J. Biol. Chem. 271:17205-17210, 1996). The deduced protein sequence of mouse and human PL scramblase reveals an extensive segment of highly conserved sequence extending through residue Glu306 (or the equivalent residue in the conserved region of another PL scramblase). The predicted secondary structure through this portion of the protein reveals that it contains two short alpha-helical segments near the C-terminus that are separated by a 12-residue acidic loop. In both proteins (human and mouse), the C-terminal alpha helix represents a predicted transmembrane segment with a strongly-preferred inside-to-outside orientation, whereas sequence contained within the adjacent 12-residue acidic loop conforms in-part to a consensus sequence that is characteristic of an EF-hand Ca 2+ -binding motif (S. Nakayama, et al., Annu. Rev. Biophys. Biomol. Struct. 23:473-507, 1994). In this motif, residues in positions 1, 3, 5, 7, 9 and 12 contribute to octahedral coordination of the Ca 2+ ion, with the residues in position 1 [Asp], 3 [Asp, Asn, or Ser] and 12 [Asp or Glu] being those most highly conserved. In order to gain insight into whether this segment of the protein might be directly involved in the Ca 2+ -dependent reorganization of membrane PL mediated by PL scramblase, we expressed mutant human PL scramblase with Asp→Ala substitutions at positions corresponding to residues 1 (i.e., Asp273), 3 (i.e., Asp275), and 12 (i.e., Asp284) of this putative 12 residue EF-hand loop. Whereas mutations in positions 1 or 12 lead to a partial loss of function, mutation in position 3 resulted in complete inactivation of the Ca 2+ -dependent response. The partial loss in activity of PL scramblase with mutations in positions 1, 3, or 12 was accompanied by a significant reduction in apparent avidity for Ca 2+ . These data identify the segment of human PL scramblase between Asp273-Asp284 as containing the essential binding site for Ca 2+ and suggest that the activity of this protein can be selectively inhibited by blocking access of Ca 2+ to this segment of the polypeptide or by modifying residues contained in this segment of the polypeptide.

Therefore, in another embodiment, the present invention is a method for inhibiting the clot-promoting and procoagulant activity of the plasma membrane by preventing the binding of intracellular Ca 2+ to the PL scramblase polypeptide. In one embodiment, the method comprises constructing a mutant PL scramblase, wherein the PL scramblase is mutated between Asp273 and Asp284 so that the scramblase does not bind Ca 2+ with the same affinity as PL scramblase. This mutant gene may be used, by methods known to one of skill in the art, to transfect a cell or cell line in which one wishes to modulate the clot promoting or procoagulant properties. We envision that the mutated PL scramblase will out-compete native PL scramblase and thus modulate, preferably reduce, PL scramblase activity in the cell or cell line.

In another embodiment, this method preferably comprises the steps of exposing a PL scramblase to a calcium binding inhibitor and reducing PL scramblase activity. Applicants specifically envision that this inhibitor may be either a direct inhibitor of calcium binding or would bind to the residues described above and block calcium binding. This method, as above, would be useful to prepare cells, tissues and organs for transplantation and as a therapeutic antithrombotic.

C. Modification of PL Scramblase Through Phosphorylation by Cellular Protein Kinases

As another embodiment, the present invention includes a method to prevent phosphorylation of PL scramblase at one or more Tyr, Thr or Ser residues by inhibiting the action of intracellular Tyr or Ser/Thr kinases. The amino acid sequence of PL scramblase reveals potential sites of phosphorylation at Tyr, Thr, or Ser residues by cellular protein kinases, including the conserved motif Thr161-Leu162-Arg163 of human SEQ ID NO:2 (corresponding to Thr159-Leu160-Arg161 of mouse SEQ ID NO:4) predicting phosphorylation by protein kinase C (Q. Zhou, et al., supra, 1997 and FIG. 5 ). Protein phosphorylation by one or more cellular protein kinases is known to regulate many aspects of cell function, which can include both the activation and inactivation of specific enzyme activities. In the specific case of PL scramblase, depletion of cellular ATP has been shown to inhibit surface exposure of phosphatidylserine on erythrocytes exposed to elevated [Ca 2+ ] c (D. W. Martin, et al., J. Biol. Chem. 270:10468-10474, 1995). In combination with our discovery of conserved motifs for phosphorylation of PL scramblase, we propose that normal PL scramblase activity requires constitutive phosphorylation of the polypeptide. Such phosphorylations invariable occur at one or more tyrosines (ie., by tyrosine protein kinases) or at one or more serines or threonines (i.e. by Ser/Thr protein kinases). The specific sites of phosphorylation within a given protein are readily identified by finding conserved sequence motifs predictive of phosphorylation, and confirmed using methods known to those skilled in the art. Such methods include metabolically labeling the cellular proteins with 32 P, purifying the protein using specific antibody, and identifying the specific residues of polypeptide sequence that contain covalently bound 32 P, standardly performed by tryptic cleavage of the isolated protein, HPLC separation of resulting peptides, and identification of the phosphorylated residues by either Edman degradation or mass spectroscopic analysis.

As another embodiment, the Examples below specifically disclose Thr161 (or the equivalent residue in the conserved region of another PL scramblase) as a single predicted site of phosphorylation by protein kinase C. Disruption of this phosphorylation or modification of the particular residues involved would modify PL scramblase activity. Therefore, the present invention is a method for altering the procoagulant activity of the plasma membrane by preventing phosphorylation by protein kinases, such as protein kinase C. In one embodiment, the method comprises creating a mutant PL scramblase, wherein the mutant PL scramblase does not contain a site capable of phosphorylation by cellular protein kinase. Preferably, the mutant PL scramblase is mutated at Thr161. One then creates a gene construct capable of expressing the mutated PL scramblase and transfects a cell or cell line of interest. In this manner, one introduces a mutant PL scramblase into the cell or cell line and out competes native or wild-type PL scramblase, thus altering the PL scramblase activity of the cell. In another embodiment, the method preferably comprises the steps of exposing a PL scramblase to a phosphorylation inhibitor and thus altering PL scramblase activity. Applicants specifically envision that this inhibitor may be either a general phosphorylation inhibitor or may specifically block phosphorylation at Thr161. As described above, the method would be useful to prepare cells tissues and organs for transplantation and as a therapeutic antithrombotic.

3. Expression of PC Scramblase in Human Platelet, Human Endothelium and other Cell Types

Our results described below in the Examples confirm that the level of expression of plasma membrane PL scramblase can determine the extent to which PS is mobilized to the cell surface upon elevation of [Ca 2+ ] c , and suggest that this protein normally functions to mediate the redistribution of plasma membrane phospholipids in response to the entry of calcium into the cytosol.

These data provide the first experimental demonstration that the cellular potential to mobilize PS and other procoagulant aminophospolipids from plasma membrane inner leaflet to the cell surface—and thereby expose binding sites for factor Va or other plasma coagulation factor—can be manipulated by selectively altering the level of expression of a particular cellular protein, either through direct transfection with the PL scramblase cDNA, by another intervention affecting either total cellular expression of PL scramblase protein or a post-translational modification of the PL scramblase polypeptide that is essential for its PS mobilizing function in the plasma membrane.

In one embodiment, the present invention is a method of either increasing or decreasing the clot-promoting and procoagulant properties of cell surfaces by either increasing or decreasing the level of cellular expression PL scramblase mRNA and protein.

4. Other Embodiments

The present invention is also a method for preventing the surface exposure of plasma membrane phospholipids, such as phosphatidylserine, phosphatidylethanolamine and cardiolipin, on the surface of in vitro stored blood cells (including, platelets, red blood cells, lymphocytes, or leukocytes) by adding an inhibitor or modulator of the PL scramblase activity of PL scramblase to the stored cells.

The present invention is also a method for prolonging survival of transplanted organs and grafts comprising the step of adding an inhibitor of PL scramblase PL scramblase activity to an organ perfusate during in vitro organ storage. The present invention is also a method for prolonging the survival of transplanted cells, tissues, and organs by genetically engineering the cells to be transplanted so as to alter their expression of plasma membrane PL scramblase in order to reduce exposure of PS and other thrombogenic phospholipids at the plasma membrane surface, thereby reducing the risk of infarction due to fibrin clot formation.

Therefore, in one embodiment, the present invention is a genetically engineered cell for transplantation into a human or animal wherein the cell has a lowered PL scramblase expression. Preferably, the cell expresses no PL scramblase. Preferably, this cell comprises a nucleotide molecule which is expressed by the cell and which codes for protein inhibiting the activity of PL scramblase. In another preferable embodiment, the promotor of the PL scramblase gene is altered to either increase or decrease the expression of the gene. One of skill in the art of molecular biology would envision methods to create these altered cells.

The present invention is also an animal, such as a mouse or pig, that has been genetically manipulated to “knock out” PL scramblase expression. Such an animal may be created by many variations of techniques known to one of skill in the art. Most preferably, one would delete by homologous recombination one or more exons of the PL scramblase gene within the chromosomal DNA of the appropriate embryonic stem cell of mouse, pig, or other animal. In the mouse, those exons most favored for deletion by homologous recombination are those that include part or all of DNA sequence between residues 438-1112 of SEQ ID NO:3, representing the conserved portion of the cDNA open reading frame required for expression of functional PL scramblase protein. Those embryonic stem cells showing the PL scramblase gene deletion are surgically implanted within the uterus at the appropriate time in the estrus cycle. The resulting animals carrying the defective gene are then bred to homozygosity for the PL scramblase gene deletion defect.

Preferably, the engineered cell is selected from the group consisting of endothelial cells, fibroblasts, epithelial cells, skeletal cells, cardiac and smooth muscle cells, hepatocytes, pancreatic islet cells, bone marrow cells, astrocytes, and Schwann cells. The present invention is also a prosthesis for implantation in an animal or human having the genetically engineered cells attached thereto. In one embodiment, the prosthesis is a vascular graft.

The present invention is also a method for prolonging the in vivo survival of circulating blood cells comprising the step of preventing surface exposure of plasma membrane phosphatidylserine on the circulating blood cells by inhibiting the function of plasma membrane PL scramblase. One may also wish to prevent the procoagulant properties of erythrocytes in sickle cell disease by inhibiting erythrocyte PL scramblase in a sickle cell patient.

The present invention is also a method for treating autoimmune and inflammatory diseases, such as disseminated intravascular coagulation, vascular thrombosis, fibrin generation during cardiopulmonary bypass procedures, rheumatoid arthritis, systemic lupus erythematosus, thrombotic thrombocytopenic purpura, heparin-associated thrombosis, and organ transplant rejection comprising the step of treating a patient with an inhibitor of the PL scramblase activity PL scramblase.

The present invention is also a method for diagnosing individuals with reduced or elevated capacity for platelet-promoted or erythrocyte-promoted fibrin clot activity by quantitating the level of cellular expression of PL scramblase in the individual. This method may be performed by using an antibody to PL scramblase in an immunoblot, ELISA, or fluorescence flow cytometric method. The method may also be performed using oligonucleotides derived by PL scramblase cDNA in the polymerase chain reaction. In another embodiment, the method may be performed by isolating PL scramblase from a whole blood sample, measuring the amount of PL scramblase isolated and comparing the measurement with a control sample.

One may wish to use the protein preparation of the present invention as a hemostatic agent by topically applying the protein preparation to a wound area in a freely bleeding patient.

EXAMPLES

In the Examples below, we identify the cellular component that functions to mediate the Ca 2+ -dependent reorganization of plasma membrane phospholipids, we identify the essential structural elements of this protein that are required for its phospholipid transporting function, and we describe methods for inhibiting or accelerating egress of PS to the surface of activated, injured, or apoptotic cells.

EXAMPLE 1

Purification, Sequencing and Molecular Cloning of Human PL Scramblase

A. Summary

The rapid movement of phospholipids (PL) between plasma membrane leaflets is thought to play a key role in expression of platelet procoagulant activity and in clearance of injured or apoptotic cells. U.S. Ser. No. 08/790,186, upon which this application claims priority, discloses isolation of a ˜37 kDa protein in erythrocyte membrane that mediates Ca 2+ -dependent movement of PL between membrane leaflets, similar to that observed upon elevation of Ca 2+ , in the cytosol [F. Bassè, et al. J. Biol. Chem. 271:17205-17210, 1996]. Based on internal peptide sequence obtained from this protein, a 1,445 bp cDNA was cloned from a K562 cDNA library. The deduced protein is a proline-rich, type II plasma membrane protein with a single transmembrane segment near the C-terminus. Antibody against the deduced C-terminal peptide was found to precipitate the ˜37 kDa red blood cell protein and absorb PL scramblase activity, confirming the identity of the cloned cDNA to erythrocyte PL scramblase. Ca 2+ -dependent PL scramblase activity was also demonstrated in recombinant protein expressed from plasmid containing the cDNA. Quantitative immunoblotting revealed an approximately 10-fold higher abundance of PL scramblase in platelet (˜10 4 molecules per cell) than in erythrocyte (˜10 3 molecules/cell), consistent with apparent increased PL scramblase activity of the platelet plasma membrane. PL scramblase mRNA was found in a variety of hematologic and non-hematologic cells and tissues, suggesting that this protein functions in all cells.

B. Experimental Procedures

All experimental procedures and abbreviations are as set out in U.S. Ser. No. 08/790,186, unless otherwise noted. anti-306-318, affinity purified rabbit antibody (IgG fraction) against peptide [C]ESTGSQEQKSGVW (SEQ ID NO:5); EST, expressed sequence tag; IPTG, isopropyl-β-D-thiogalactopyranoside; MBP, maltose binding protein;

Materials. Egg yolk phosphatidylcholine (PC), brain phosphatidylserine (PS), 1-palmitoyl 2-oleoyl phosphatidic acid, 1-oleoyl-2-[6(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino]caproyl-sn-glycero-3-phosphocholine (NBD-PC) and 1-oleoyl-2-[6(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino]caproyl-sn-glycero-3-phosphoserine (NBD-PS) were obtained from Avanti Polar Lipids. Expressed sequence tag (EST) clone with GenBank accession number gb AA143025 was obtained through American Type Culture Collection (ATCC962235). All restriction enzymes and amylose resin were from New England BioLabs, Inc. Klentaq polymerase was from Clontech Laboratories, wheat germ agglutinin Sepharose from Sigma, IPTG from Eastman Kodak, factor Xa from Haematologic Technologies, and Bio-Beads SM-2 were from BioRad. N-octyl-β-D-glucopyranoside (OG) and Glu-Gly-Arg chloromethyl ketone were from Calbiochem. Sodium dithionite (Na 2 S 2 O 4 , Sigma) was freshly dissolved in 1 M Tris pH 10 at a concentration of 1 M. N-Octyl-β-D-glucopyranoside (OG) was purchased from Calbiochem. Sodium dithionite (Na 2 S 2 O 41 , Sigma) was freshly dissolved in 1 M Tris pH 10 at a concentration of 1 M.

PL Scramblase isolation. Human PL scramblase protein and cDNA was obtained as described in Ser. No. 08/790,186.

Cloning of PL scramblase into pMAL-C2 expression vector. In order to express PL scramblase as a fusion protein with maltose binding protein (MBP), cDNA encoding PL scramblase was cloned into pMAL-C2 (New England BioLabs). PCR was performed on a full-length clone using the primers 5′ TCA GAA TTC GGA TCC ATG GAC AAA CAA AAC TCA CAG ATG 3′ (SEQ ID NO:6) with an EcoR1 site before the ATG start codon and 5′ GCT TGC CTG CAG GTC GAC CTA CCA CAC TCC TGA TTT TTG TTC C 3 (SEQ ID NO:7) with a SalI site after the stop codon. KlenTaq polymerase (Clontech) was used to ensure high fidelity amplification. The PCR product was digested with EcoR1 and SalI and isolated by electrophoresis on 1% low melting agarose gel and purification with Wizard kit (Promega). The amplified cDNA was cloned into pMAL-C2 vector digested with EcoRI and SalI, immediately 3′ of MBP. This construct was amplified in E. coli strain TB1, and sequence of the cDNA insert of plasmids from single colonies confirmed.

Expression and purification of PL scramblase-MBP fusion protein. Ten ml of E. coli TB1 transformed with PL scramblase cDNA-pMAL-C2 were used to inoculate 1 L of rich LB containing 2 mg/ml glucose, 100 μg/ml ampicillin, and the bacteria were allowed to grow for about 4 hours at 37° C. When A 600 reached ˜0.5, IPTG was added to a final concentration of 0-3 mM. After 2 hours of incubation at 37° C., the cells were centrifuged at 4000×g for 20 minutes. The cell pellet was suspended in 50 ml of 20 mM Tris, 200 mM NaCl, 1 mM EDTA, 1 mM DTT, 1 mM PMSF (column buffer), and subjected to a freeze/thaw cycle. After sonication (3×30 seconds on ice) and centrifugation at 43,000×g for 1 hour, the supernatant was applied to 10 ml of amylose resin. The column was washed with 20 volumes of column buffer, and the scramblase-MBP fusion protein eluted with the same buffer containing 10 mM maltose. Digestion of MBP-PL scramblase protein with factor Xa was routinely performed at {fraction (1/100)} (w/w) ratio of enzyme and monitored by SDS-PAGE. In addition to MBP, the product of this digest is the PL scramblase translation product containing the N-terminal extension Ile-Ser-Glu-Phe-Gly-Phe (codons −6 to −1).

Reconstitution of PL scramblase or scramblase fusion protein into proteoliposomes. Reconstitution and functional activity were performed essentially as previously described (F. Bassè, et al., J. Biol. Chem. 271:17205-17210, 1996; J. G. Stout, et al., J. Clin. Invest. 99:2232-2238, 1997). Briefly, a mixture of PC and PS (9:1 molar ratio) was dried under a stream of nitrogen and resuspended in 100 mM Tris, 100 mM KCl, 0.1 mM EGTA, pH 7.4 (Tris buffer). Protein samples to be reconstituted were added to the liposomes at a final lipid concentration of 4 mg/ml in the presence of 60 mM OG, and dialyzed overnight at 4° C. against 200 vol of Tris buffer containing 1 g/L Bio-Beads SM-2. To liberate PL scramblase from MBP, the proteoliposomes were incubated 3 h at room temperature in the presence of {fraction (1/40)} (w/w) factor Xa. The digestion was terminated by addition of 100 μM Glu-Gly-Arg chloromethyl ketone. Completeness of the digest was monitored by SDS-PAGE. Following dialysis, the proteoliposomes were labeled in the outer leaflet by addition of 0.25 mol % fluorescent NBD-PC (in dimethyl sulfoxide, final solvent concentration 0.25%).

PL Scramblase activity. Scramblase activity was measured as previously described (F. Bassè, et al., supra, 1996; J. G. Stout, et al., supra, 1997 and in U.S. Ser. No. 08/790,186). Routinely, proteoliposomes labeled with NBD-PC were incubated for 2 hours at 37° C. in Tris buffer in the presence or absence of 2 mM CaCl 2 . Proteoliposomes were diluted 25-fold in Tris buffer containing 4 mM EGTA and transferred to a stirred fluorescence cuvet at 23° C. Initial fluorescence was recorded (SLM Aminco 8000 spectrofluorimeter; excitation at 470 nm, emission at 532 nm), 20 mM dithionite was added, and the fluorescence continuously monitored for a total of 120 seconds. The difference in non-quenchable fluorescence observed in presence vs. absence of CaCl 2 was attributed to Ca 2+ -induced change in NBD-PC located in the outer leaflet (F. Bassè, et al., supra, 1996; J. G. Stout, et al., supra, 1997; J. C. McIntyre and R. G. Sleight, Biochemistry 30:11819-11827, 1991). Ionized [Ca 2+ ] was calculated using FreeCal version 4.0 software (generously provided by Dr. Lawrence F. Brass, University of Pennsylvania, Philadelphia, Pa.).

Antibody against PL Scramblase C-terminal peptide. The peptide CESTGSQEQKSGVW (SEQ ID NO:5), corresponding to amino acids 306-318 of the predicted open reading frame of PL scramblase with an added N-terminal cysteine, was synthesized and conjugated to keyhole limpet hemocyanin (Protein Core Facility, Blood Research Institute). Antiserum to this protein was raised in rabbit (Cocalico Biologicals, Inc.) and the IgG fraction isolated on Protein A Sepharose-CL4B (Sigma). Peptide-specific antibody was isolated by affinity chromatography on UltraLink Iodoacetyl beads (Pierce) to which peptide CESTGSQEQKSGVW (SEQ ID NO:5) was conjugated. This affinity-purified antibody (anti-306-318) was used for immunoprecipitation and Western blotting of PL scramblase (below) Immunoprecipitation of PL scramblase. PL scramblase purified from human erythrocytes was 125 I-labeled with Iodogen (Pierce), free iodide removed by gel filtration, and the protein incubated (4° C., overnight) with either anti-306-318, or an identical quantity of pre-immune rabbit IgG (1 mg/ml in 150 mM NaCl, 10 mM MOPS, 50 mM OG, pH 7.4) or no IgG as control. The IgG was precipitated with protein A Sepharose, washed exhaustively, and protein bands resolved by 8-25% SDS-PAGE (Phast System, Pharmacia Biotech Inc.) under reducing conditions. Radioactive bands were visualized by autoradiography. In order to determine whether antibody to this peptide specifically removed the functional activity associated with the purified erythrocyte PL scramblase protein, the supernatant fractions remaining after immunoprecipitation were reconstituted in liposomes for activity measurements, performed as described above. For these experiments, unlabeled erythrocyte PL scramblase substituted for the 125 I-labeled protein.

Western Blot Analysis. 2×10 8 washed platelets, 2×10 8 erythrocyte ghost membranes, 0.9 pmoles of purified recombinant PL scramblase (obtained by factor Xa digest of the PL scramblase-MBP fusion protein), or 0.3 pmoles of PL scramblase purified from human erythrocyte were each denatured by boiling in 40 μl sample buffer containing 10% SDS, 4% β-mercaptoethanol, and 1 mM EDTA, and protein bands resolved by SDS-PAGE. After transfer to nitrocellulose, the blocked membrane was incubated with 1 μg/ml of anti-306-318, and the blot developed with horseradish preoxidase-conjugated goat anti-rabbit IgG (Sigma) using Chemiluminescence Reagent (Dupont).

Protein Concentrations. Protein concentrations were estimated based upon optical density at 280 nm, using extinction coefficients (M −1 cm −1 ) of 39,000 (PL scramblase), 64,500 (MBP), and 105,000 (PL scramblase-MBP fusion). PL scramblase contained in human platelet and erythrocyte membranes was estimated by quantitative immunoblotting of the detergent extracts, with reference to known quantities of purified MBP-PL scramblase fusion protein.

Northern Blot Analysis. Human multiple tissue northern blot and human cancer cell line multiple tissue northern blot membranes were obtained from Clontech. The blots were prehybridized with ExpressHyb (Clontech) at 68° C. for 30 minutes and hybridized with ExpressHyb containing 5 ng/ml 32 P-labeled PL scramblase cDNA probe at 68° C. for 1 hour, then washed and exposed to X-ray film. After development, the blots were stripped and hybridized with 32 P-labeled β-actin cDNA probe using identical conditions.

C. Results and Discussion

U.S. Ser. No. 08/790,186 describes the initial purification of PL scramblase from human erthyrocyte membrane and analysis of cyanogen bromide fragments. The fragments were used to obtain an entire PL scramblase DNA alone ( FIGS. 1A , B, C and D).

FIGS. 1A and B illustrates the cDNA and deduced amino acid sequence of human PL scramblase. The deduced amino acid sequence of the predicted open reading frame is shown under the nucleotide sequence. The 32 residues of peptide sequence that were obtained from cyanogen bromide digest of purified erythrocyte PL scramblase are indicated by single underline. Also indicated are the residues comprising a predicted inside-to-outside transmembrane domain (Ala291-Gly309; double underline) and protein kinase C phosphorylation site (Thr 161; asterisk). See Experimental Procedures for details.

Analysis of the cDNA-derived protein sequence (Tmpred program, ISREC server, Univ. of Lausanne, Epalinges, Switzerland) revealed a strongly-preferred (p<0.01) inside-to-outside orientation of the predicted 19 residue transmembrane helix, consistent with a type II plasma membrane protein. Most of the polypeptide (residues 1-290) thereby extends from the cytoplasmic membrane leaflet, leaving a short exoplasmic tail (residues 310-318). The predicted orientation of this protein is consistent with the anticipated topology of PL scramblase in the erythrocyte membrane, where lipid-mobilizing function is responsive to [Ca 2+ ] only at the endofacial surface of the membrane (P. Williamson, et al., Biochemistry 31:6355-6360, 1992; E. F. Smeets, et al., Biochim. Biophys. Acta Bio-Membr. 1195:281-286, 1994; F. Bassè, et al., supra, 1996; J. G. Stout, et al., supra, 1997; P. Williamson, et al., Biochemistry 34:10448-10455, 1995; D. L. Bratton, J. Biol. Chem. 269:22517-22523, 1994).

In order to confirm that the cDNA we cloned from the K562 cDNA library actually encodes the same protein purified as PL scramblase from human erythrocyte membrane, we raised a rabbit antibody against the deduced C-terminus predicted from the open reading frame of the cloned cDNA (codons 306-318).

FIG. 2 illustrates immunoprecipitation of erythrocyte PL scramblase. PL scramblase purified from human erythrocytes was precipitated with either anti-306-318 IgG (bar 1), or with pre-immune rabbit IgG (bar 2) and protein remaining in the supernatant reconstituted into liposomes for measurement of residual PL scramblase activity. Data normalized to PL scramblase activity measured for identical controls omitting antibody (100%; bar 3). Error bars denote mean ± SD (n=4).

As shown in FIG. 2 , this antibody precipitated the ˜37 kDa red cell protein we tentatively identified as PL scramblase, and also absorbed the functional activity detected in this isolated erythrocyte membrane protein fraction. We often observed the partial proteolysis of 37 kDa PL scramblase to a polypeptide of ˜30 kDa. The apparent susceptibility of this protein to proteolytic degradation may account for the reported rapid loss of activity observed in earlier attempts to purify PL scramblase from platelet (P. Comfurius, et al., Biochemistry 35:7631-7634, 1996).

Expression and membrane reconstitution of recombinant PL scramblase. Recombinant PL scramblase was expressed in E. coli as fusion protein with MBP, purified by amylose affinity chromatography, and incorporated into PC/PS liposomes for assay of PL scramblase activity. When incorporated into liposomes, the recombinant protein mediated a Ca 2+ -dependent transbilayer movement of NBD-PC mimicking the activity of PL scramblase isolated from erythrocyte. PL scramblase activity was observed both for the chimeric MBP-PL scramblase fusion protein, and for recombinant PL scramblase liberated from MBP through proteolytic digestion with factor Xa (FIG. 3 ).

FIG. 3 depicts an activity assay of recombinant PL scramblase. Purified PL scramblase-MBP fusion protein (0-43×10 1−1 moles; abscissa) was reconstituted into liposomes (1 μmole total PL) and MBP proteolytically removed by incubation with factor Xa in presence of 0.1 mM EGTA. After digest to release MBP, the proteoliposomes were recovered for determination of PL scramblase activity, measured in the absence (∘) or presence (&Circlesolid;) of 2 mM CaCl 2 as described in Experimental Procedures. Data are corrected for non-specific transbilayer migration of NBD-PC probe in identically-matched control liposomes containing either MBP or no added protein (<2% NBD-PC sequestered; not shown). Error bars denote mean ± SD (n=3). Data of single experiment, representative of two so performed. Similar results were also obtained for proteoliposomes containing intact PL scramblase-MBP fusion protein, omitting the factor Xa digest (not shown).

By contrast, no such activity was observed for control protein consisting of the pMAL-C2 translation product MBP lacking the PL scramblase cDNA insert. The specific PL mobilizing activity of recombinant PL scramblase expressed and purified from E. coli was approximately 50% of that observed for the endogenous protein purified from the erythrocyte membrane, which is likely due to incomplete folding of the recombinant protein. Half-maximal [Ca 2+ ] required for activation was approximately 100-200 μM for recombinant protein purified from E. coli versus ˜40 μM for the erythrocyte-derived protein, raising the possibility that altered folding or an unknown post-translational modification in mammalian cells affects the putative Ca 2+ binding site (F. Bassè, et al., supra, 1996; J. G. Stout, et al., supra, 1997). In addition to activation by Ca 2+ , the transbilayer migration of PL in erythrocytes is accelerated upon acidification of the inside leaflet to pH<6.0 (in absence of Ca 2+ ), a response that is also observed in proteoliposomes containing PL scramblase purified from erythrocyte membranes (J. G. Stout, et al., supra, 1997). A similar acid-dependent activation of PL mobilizing function was also exhibited by proteoliposomes incorporating recombinant PL scramblase purified from E. coli.

Platelet PL Scramblase. In addition to the presumed role of PL scramblase in PS exposure following cell injury and upon repeated sickling of SS hemoglobin red cells, the capacity of activated platelets to rapidly mobilize aminophospholipids across the plasma membrane is thought to play a central role in the initiation of thrombin generation required for plasma clotting (R. F. A. Zwaal and A. J. Schroit, Blood 89:1121-1132, 1997). Whereas incubation with Ca 2+ ionophore causes a marked acceleration in transbilayer movement of plasma membrane PL in both platelets and erythrocytes, the apparent rate of transbilayer PL migration in platelet exceeds that in erythrocyte by approximately 10-fold, implying either a higher abundance of PL scramblase, or the action of another component in platelet with enhanced PL scrambling function (J. C. Sulpice, et al., J. Biol. Chem. 269:6347-6354; 1994; J. C. Sulpice, et al., Biochemistry 35:13345-13352, 1996). Zwaal and associates recently reported evidence for the existence of protein(s) in platelet with functional properties similar to that of PL scramblase we isolated from erythrocyte (F. Bassè, et al., supra, 1996; J. G. Stout, et al., supra, 1997; P. Comfurius et al., supra, 1996). In order to determine whether the protein we now identify in the erythrocyte membrane is also found in platelets, we probed platelets with antibody against PL scramblase residues 306-318. FIG. 4 illustrates immunoblotting of PL scramblase in human erythrocytes and platelets. 2×10 8 platelets (lane 1), and ghost membranes from 2×10 8 erythrocytes (lane 2), were separated by SDS-PAGE, transferred to nitrocellulose and Western blotted with anti-306-318 antibody as described in Experimental Procedures. Lane 3 contains 0.9 pmoles of factor Xa cleaved recombinant PL scramblase and lane 4 contains 0.3 pmoles of PL scramblase purified from erythrocytes. Data of single experiment representative of three so performed.

As shown in FIG. 4 , this antibody blotted a single protein in platelet with similar mobility to the ˜37 kDa PL scramblase in erythrocyte. Based on quantitative immunoblotting with anti-306-318, we estimate approximately 10 4 molecules/cell in platelet versus 10 3 molecules/cell in erythrocyte, consistent with the increased PL scramblase activity and procoagulant function observed for human platelets versus erythrocytes.

Tissue Distribution. In addition to platelet and red blood cell, PL scramblase activity has been observed in many other cells, and this Ca 2+ -induced response is thought to be central to the rapid movement of PS and phosphatidylethanolamine from inner plasma membrane leaflet to the surface of perturbed endothelium, and a variety of injured and apoptotic cells (R. F. A. Zwaal and A. J. Schroit, supra, 1997). The resulting exposure of PS at the cell surface is thought to play a key role in removal of such cells by the reticuloendothelial system, in addition to activation of both the plasma complement and coagulation systems (R. H. Wang, et al., J. Clin. Invest. 92:1326-1335, 1993; V. A. Fadok, et al., J. Immunol. 148:2207-2216, 1992; R. F. A. Zwaal and A. J. Schroit, supra, 1997). Whereas the molecular mechanism(s) in each circumstance remains unresolved, evidence for a specific platelet membrane protein functioning to accelerate migration of PL between membrane leaflets at increased cytosolic [Ca 2+ ] has been reported (P. Comfurius, et al., supra, 1996), similar to the proposed role of PL scramblase in red blood cells (F. Bassè, et al., supra, 1996; J. G. Stout, et al., supra, 1997). It was thus of interest to determine whether mRNA for this protein is expressed in nucleated cells where PL scramblase-like activity has been observed.

Northern blotting with PL scramblase cDNA revealed transcripts of ˜1.6 and ˜2.6 kb in all tissues and cell lines tested. Some tissue-to-tissue and cell line variability in the relative abundance of these two transcripts is apparent, the significance of which remains to be determined. Also notable was markedly reduced expression in HL-60 and the lymphoma lines Raji and MOLT-4 whereas abundant message was detected in spleen, thymus, and peripheral leukocytes. In addition to the transformed cell lines shown, mRNA for PL scramblase was also confirmed in human umbilical vein endothelial cells. Whereas these data imply that the same protein identified as mediating accelerated transbilayer flip-flop of the erythrocyte membrane PL also plays a similar role in the plasma membrane of platelets, leukocytes and other cells, actual confirmation for this role of PL scramblase awaits analysis of a cell line that is selectively deficient in this protein. In Scott syndrome, a bleeding disorder related to an inherited deficiency of plasma membrane PL scramblase function, erythrocytes deficient in PL scramblase activity were found to contain normal amounts of the PL scramblase protein (J. G. Stout, et al., supra, 1997) and unpublished data). Furthermore, despite the apparent deficiency in Scott syndrome cells of endogenous PL scramblase function, when PL scramblase protein from these cells was purified and reconstituted in proteoliposomes containing exogenous PL, it exhibited normal Ca 2+ -dependent PL-mobilizing activity (J. G. Stout, et al., supra, 1997). This suggests that in addition to the known regulation by intracellular [Ca 2+ ], the activity of PL scramblase in the plasma membrane is regulated by other as yet unidentified membrane or cytoplasmic component(s).

EXAMPLE 2

Cloning of Murine PL scramblase and Identity of a Conserved Motif in Phospholipid Scramblase that is Required for Accelerated Transbilayer Movement of Membrane Phospholipids by Ca 2+

A. Summary

Accelerated transbilayer movement of plasma membrane phospholipids (PL) upon elevation of Ca 2+ in the cytosol plays a central role in the initiation of plasma clotting and in phagocytic clearance of injured or apoptotic cells. We recently identified a human erythrocyte membrane protein that induces rapid transbilayer movement of PL at elevated Ca 2+ , and presented evidence that this PL scramblase is expressed in a variety of other cells and tissues where transbilayer movement of plasma membrane PL is promoted by intracellular Ca 2+ (Q. Zhou, et al., J. Biol. Chem. 272:18240-18244, 1997). We have now cloned murine PL scramblase for comparison to the human polypeptide (FIG. 1 C and D): Both human and murine PL scramblase are acidic proteins (pI=4.9) with a predicted inside-outside (type 2) transmembrane segment at the carboxyl-terminus (FIGS. 5 A and B). Whereas human PL scramblase (318 AA) terminates in a short exoplasmic tail, murine PL scramblase (307 AA) terminates in the predicted membrane-inserted segment. The aligned polypeptide sequences reveal 65% overall identity, including near identity through 12 residues of an apparent Ca 2+ binding motif (D[A/S]DNFGIQFPLD) spanning residues 273-284 (human, SEQ ID NO:2) and 271-282 (murine, SEQ ID NO:4), respectively (FIGS. 5 A and B). This conserved sequence in the cytoplasmic domain of PL scramblase shows similarity to Ca 2+ -binding loop motifs previously identified in known EF-hand structures. Recombinant murine and human PL scramblase were each expressed in E. coli and incorporated into proteoliposomes. Measurement of transbilayer movement of NBD-labeled PL confirmed that both proteins catalyzed Ca 2+ -dependent PL flip/flop similar to that observed for the action of Ca 2+ at the cytoplasmic face of plasma membranes. Mutation of residues within the putative EF hand loop of human PL scramblase resulted in loss of its PL mobilizing function, suggesting that these residues directly participate in the Ca 2+ induced active conformation of the polypeptide.

B. Experimental Procedures

Abbreviations used: PL, phospholipids(s); PC, phosphatidylcholine; PS, phosphatidylserine; NBD-PC, 1-oleoyl-2-[6(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino]caproyl-sn-glycero-3-phosphocholine; EST, expressed sequence tag; MBP, maltose binding protein; PAGE, polyacrylamide gel electrophoresis; bp, base pair(s); PCR; polymerase chain reaction.

Materials: Mouse fibroblast 5′-stretch plus cDNA library and KlenTaq polymerase were obtained from CLONTECH Laboratories. Expressed sequence Tag (EST) clone with GenBank™ accession number gb AA110551 was from American Type Culture Collection (ATCC 977052). α- 32 P-dCTP was purchased from Dupont. Random Primed DNA Labeling Kit was from Boehringer Mannheim. Hybond-N Nylon membrane was from Amersham. Expression vector pMAL-C2, amylose resin and all restriction enzymes were from New England Biolabs. Wizard Kit was from Promega. Qiagen Lambda Kit was from Qiagen. Egg yolk phosphatidylcholine (PC), brain phosphatidylserine (PS) and 1-oleoyl-2-[6(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino]caproyl-sn-glycero-3-phosphocholine (NBD-PC) were obtained from Avanti Polar Lipids. Factor Xa was from Haematologic Technologies, and Bio-Beads SM-2 were from BioRad. N-octyl-β-D-glucopyranoside and Glu-Gly-Arg chloromethyl ketone were from Calbiochem. Sodium dithionite (Sigma) was freshly dissolved in 1M Tris, pH 10, at a concentration of 1 M.

Labeling of DNA Probe: The DNA insert of EST clone gb AA110551 was released by digestion with EcoRI and ApalI and purified by Wizard Kit. Four micrograms of purified DNA were labeled with 1 mCi of α- 32 P-dCTP. The specific radioactivity of the probe was 3.9×10 5 dpm/μg DNA.

Isolation of Mouse PL Scramblase cDNA by Plaque Hybridization: E. coli strain Y1090r was transformed by mouse fibroblast cDNA library (6×10 5 pfu) and poured onto 30 plates (15 cm diameter, 20,000 pfu per plate). Plaques were lifted onto Hybond-N Nylon membranes. After denaturation, neutralization and UV-cross linking, the membranes were first prehybridized in a solution composed of 5× Denhardt, 5× SSC, 1% SDS, and 200 μg/ml herring sperm DNA for 3 hours at 68° C., and then hybridized in the same solution containing 5 ng/ml 32 P-labeled probe for 16 hours at 68° C. The membranes were washed once with 2× SSC, 0.1% SDS, then three times with 0.1× SSC, 0.1% SDS for 20 minutes at 65° C., and exposed to X-ray film. Secondary plaque lifts and hybridization were carried out on 8 positive plaques at a density of about 100 plaques/plate. Single positive and well isolated plaques were picked and amplified. λDNA was purified with Qiagen Lambda Maxi Kit.

DNA Sequencing. DNA was sequenced on an ABI DNA Sequencer Model 373 Stretch (Applied Biosystems) using PRISM Ready Reaction DyeDeoxy Terminator Cycle Sequencing Kit (Perkin Elmer).

Cloning of Mouse PL Scramblase into pMAL-C2 Expression Vector. In order to express mouse PL scramblase as a fusion protein with maltose binding protein (MBP), cDNA encoding mouse PL scramblase was cloned into pMAL-C2 expression vector. PCR was performed on a mouse scramblase clone using the primers 5′ TCA GAA TTC GGA TCC ATG GAG GCT CCT CGC TCA GGA AC 3′ (SEQ ID NO:8) with an EcoRI site before the ATG start codon and 5′ GCT TGC CTG CAG GTC GAC CTA CAC ACA GCC TTC AAA AAA CAT G 3′ (SEQ ID NO:9) with a SalI site after the stop codon. KlenTaq polymerase was used to ensure high fidelity amplification. The PCR product was digested with EcoRI and SalI, isolated by electrophoresis, and cloned into pMAL-C2 immediately 3′ of MBP. E. coli strain TB1 was transformed, and sequence of the cDNA insert of plasmid from a single colony was confirmed.

Expression and Purification of Mouse PL Scramblase-MBP Fusion Protein: Mouse PL scramblase was expressed as fusion protein with MBP in E. coli TB1 and purified on amylose resin as previously described for human PL scramblase (Q. Zhou, et al., J. Biol. Chem. 272:18240-18244, 1997). The purified fusion protein was centrifuged at 106,000×g for 1 hour at 4° C. to remove aggregated protein.

Reconstitution and Functional Activity of PL Scramblase: Reconstitution, removal of MBP, and functional assay of PL scramblase were performed as previously described (F. Bassè, et al., J. Biol. Chem. 271:17205-17210, 1996; Q. Zhou, et al., supra, 1997; J. G. Stout, et al., J. Clin. Invest. 99:2232-2238, 1997). Routinely, 420 pmoles of protein were reconstituted with 1 μmol of PL. To remove MBP, proteoliposomes were incubated 3 hours at room temperature with {fraction (1/40)} (w/w) factor Xa. The digest was terminated by addition of 100 μM Glu-Gly-Arg chloromethyl ketone. Proteoliposomes labeled with NBD-PC were incubated for 2 hours at 37° C. in Tris buffer in the presence or absence of CaCl 2 as indicated in figure legends and diluted 25-fold in Tris buffer containing 4 mM EGTA. Initial fluorescence was recorded (SLM Aminco 8000 spectrofluorimeter; excitation at 470 nm, emission at 532 nm), 20 mM dithionite was added, and the fluorescence was continuously monitored for a total of 120 seconds. Scramblase activity was calculated according to the difference in non-quenchable fluorescence observed in presence vs absence of CaCl 2 . Ionized [Ca 2+ ] was calculated using FreeCal version 4.0 software (generously provided by Dr. Lawrence F. Brass, University of Pennsylvania, Philadelphia, Pa.).

Protein Concentrations: Protein concentrations were estimated based upon optical density at 280 nm, using extinction coefficients (M −1 cm −1 ) of 39,000 (PL scramblase), 64,500 (MBP), and 105,000 (PL scramblase-MBP fusion protein).

Mutagenesis of PL Scramblase: Human PL scramblase amino acid residues in EF-hand Ca 2+ -binding motif at positions of Asp 273 , Asp 275 , Phe 277 , Ile 279 , Phe 28 l and Asp 284 were mutated to Ala with oligonucleotide-directed mutagenesis by two rounds of PCR. PL scramblase-pMAL-C2 was selected as template, and the first round of PCR was performed with pairs of a complementary oligonucleotide primer containing the point mutation plus a primer complementary to a site near the ATG initial codon or TAG stop codon. PCR products were purified by Wizard kit. Full length mutated PL scramblase cDNA was obtained by overlapping PCR and cloned back into pMAL-C2 vector. After confirmation of correct DNA sequence the mutants were recombinantly expressed in E. coli as described above and analyzed by SDS-PAGE.

C. Results and Discussion

Isolation of cDNA of Mouse PL Scramblase. Murine EST clones in GenBank containing putative PL scramblase sequence were identified by a Blast homology search using the human PL scramblase cDNA. Among several clones exhibiting significant homology, a 403 bp Stratagene mouse kidney clone (gb accession number AA110551) with 79% nucleotide sequence identity to human PL scramblase was selected and this clone was used to probe a mouse fibroblast cDNA library. Eight positive clones were identified after two rounds of plaque hybridization. Two of the eight clones were sequenced yielding 1354 bp and 1529 bp, respectively. Alignment revealed 1261 bp of overlapping sequence that spanned an open reading frame of 921 bp and specified a total of 1622 bp of unique cDNA sequence (SEQ ID NO:3).

SEQ ID NO:4 represents the open reading frame of the translated sequence of SEQ ID NO:3 (see FIGS. 1 C and D). The deduced mouse PL scramblase cDNA encodes a 307 residue protein with a molecular weight of 33.9 kDa and a theoretical pI=4.9, similar to values obtained for the human protein (318 residues, 35.1 kDa; pI=4.9; ref. (Q. Zhou, et al., supra, 1997). The overall identity of the mouse and human PL scramblase is 64.8%, with the most divergent sequence generally contained in the N-terminal portion of the polypeptide (FIGS. 5 A and B). FIG. 5 depicts the alignment of protein sequences of mouse and human PL scramblase. Alignment between mouse (MUR) and human (HUM) PL scramblase was performed by FASTA program using the Smith-Waterman algorithm. (W. R. Pearson and D. J. Lipman, Proc. Natl. Acad. Sci. USA 85:2444-2448, 1988) Sequence of human PL scramblase is contained in GenBank T accession number AF008445. Amino acid identities (:) or similarities (.) between the two sequences are indicated. Also indicated are the residues comprising a predicted inside-out transmembrane domain (MUR 289-307, HUM 291-309; double underline), and the 12 residues of the acidic loop of a putative EF-hand (MUR 271-282, HUM 273-284; single underline).

In both proteins, a single 19 residue transmembrane helix is predicted at the carboxyl terminus, exhibiting a strongly preferred inside-to-outside orientation. Whereas the mouse protein terminates immediately after this conserved transmembrane helix, the human PL scramblase contains an additional nine residues, implying that the short exoplasmic peptide in human PL scramblase is non-essential to function. Homology motifs conserved in both proteins include a potential site for protein kinase C phosphorylation (Thr 159 in mouse, Thr 161 in human) and a potential Ca 2+ -binding EF-hand loop motif adjacent to the transmembrane helix (residue Asp 271 to Asp 282 in mouse and residues Asp 273 to Asp 284 in human). The cytoplasmic orientation of this protein and the proximity of this putative Ca 2+ -binding domain to the segment of polypeptide that is inserted into the plasma membrane are consistent with the proposed activity of this protein in situ, where Ca 2+ acting directly at the endofacial membrane surface is known to initiate the rapid transbilayer movement of plasma membrane PL (P. Williamson, et al., Biochemistry 31:6355-6360, 1992; R. F. A. Zwaal, and A. J. Schroit, Blood 89:1121-1132, 1997; F. Bassè, et al., J. Biol. Chem. 271:17205-17210, 1996; D. L. Bratton, J. Biol. Chem. 269:22517-22523, 1994; B. Verhoven, et al., Biochim. Biophys. Acta 1104:15-23, 1992).

Functional Activity of Recombinant Mouse PL Scramblase. In order to confirm that the cDNA identified as mouse PL scramblase encodes a protein of similar function to that identified in human, the human and mouse proteins were each expressed in E. coli, purified, and reconstituted in proteoliposomes for measurement of PL mobilizing activity. Mouse or human PL scramblase-MBP fusion protein (420 pmoles) was reconstituted into PC/PS liposomes (1 μmol total PL), respectively, MBP was removed by digestion of the proteoliposomes with factor Xa, and PL scramblase activity was determined as described under “Experimental Procedures” and plotted as a function of external free [Ca 2+ ]. The results of this experiment indicate that recombinant mouse PL scramblase mediated a Ca 2+ -dependent transbilayer movement of membrane PL with a specific activity and affinity for Ca 2+ indistinguishable from that observed for the recombinant human protein.

Mutational Analysis of a Putative Conserved EF-Hand Motif. As noted above, the deduced protein sequence of mouse and human PL scramblase reveals an extensive segment of highly conserved sequence extending through residue Glu 306 (in human; corresponding to Glu 304 in mouse; FIG. 5 ). The predicted secondary structure through this portion of the protein reveals that it contains two short alpha-helical segments near the C-terminus that are separated by a 12-residue acidic loop. In both proteins (human and mouse), the C-terminal alpha helix represents a predicted transmembrane segment with a strongly-preferred inside-to-outside orientation, whereas sequence contained within the adjacent 12-residue acidic loop conforms in-part to a consensus sequence that is characteristic of an EF-hand Ca 2+ -binding loop motif (S. Nakayama and R. H. Kretsinger, Annu. Rev. Biophys. Biomol. Struct. 23:473-507, 1994). In this motif, residues in positions 1, 3, 5, 7, 9 and 12 of the loop contribute to octahedral coordination of the Ca 2+ ion, with the residues in position 1 [Asp], 3 [Asp, Asn, or Ser] and 12 [Asp or Glu] being those most highly conserved.

In order to gain insight into whether this segment of the protein might be directly involved in the Ca 2+ -dependent reorganization of membrane PL mediated by PL scramblase, we expressed mutant human PL scramblase with Ala substitutions at positions corresponding to residues 1 (Asp 273 ), 3 (Asp 275 ), 5 (Phe 277 ), 7 (Ile 279 ), 9 (Phe 281 ) and 12 (Asp 284 ) of this putative 12 residue EF-hand loop. FIG. 6 illustrates PL scramblase activity as a function of mutational analysis of putative EF hand loop motif contained in human PL scramblase. Wild-type (WT) and mutant constructs of human PL scramblase were expressed as fusion proteins with MBP in E. coli, purified, and reconstituted in proteoliposomes. After release of MBP by incubation with factor Xa, PL scramblase activity was assessed (see “Experimental Procedures”). For each mutant construct, the residues in human PL scramblase that were replaced by Ala are indicated on the abscissa. PL scramblase activity (ordinate) was measured in presence of 2 mM CaCl 2 , and in each case was normalized to the activity of WT human PL scramblase (11.76±0.44% of total NBD-PC flipped), with correction for the non-specific transbilayer movement of NBD-PC (0.20±0.08% of total NBD-PC flipped) measured in PL vesicles lacking added protein. Error bars indicate mean ± SD of three independent measurements performed with each mutant construct. FIG. 6 illustrates the data of single experiment, representative of two separate experiments so performed.

As illustrated by FIG. 6 , Ala substitution at any of these positions reduced PL scramblase function, with mutation at Asp 275 resulting in complete inactivation of the Ca 2+ -dependent response. In those mutant polypeptides showing partial retention of activity, reduced response to Ca 2+ was related in-part to an apparent reduction in avidity for Ca 2+ (FIG. 7 ). FIG. 7 illustrates the Ca 2+ -dependence of mutant human PL scramblase. PL scramblase activity of wild-type (WT) and selected mutant constructs of FIG. 6 was determined as described in “Experimental Procedures” and plotted as a function of external free [Ca 2+] WT(&Circlesolid;); Asp 273 (□); Phe 277 (Δ); Ile 279 (⋄); Phe 281 (∘) Asp 284 (∇). The data are corrected for non-specific transbilayer migration of NBD-PC in the absence of free [Ca 2+ ]. Data of single experiment. The results described in FIG. 7 suggest that residues contained in the putative EF-hand loop spanning Asp 273 -Asp 284 are critical to the function of PL scramblase, presumably for coordination of Ca 2+ as required to induce the PL transporting state of the protein. It remains to be determined what conformational changes are induced in the polypeptide in the presence of Ca 2+ , including potential reorientation of helical segments flanking the putative Ca 2+ binding loop, that might contribute to the accelerated transbilayer movement of membrane phospholipids.

EXAMPLE 3

Plasma Membrane Expression of Phospholipid Scramblase Regulates Ca 2+ Induced Movement of Phosphatidylserine to the Cell Surface: Alteration of Phosphatidylserine Exposure In Human Lymphoblasts Through Stable Transfection with PL Scramblase cDNA

A. Summary

In order to determine whether PL scramblase is responsible for the rapid movement of PS from inner-to-outer plasma membrane leaflets in other cells exposed to elevated cytosolic [Ca 2+ ] c , we analyzed how induced movement of PS to the surface related to cellular content of PL scramblase. Exposure to Ca 2+ ionophore A23187 resulted in rapid PS exposure in those cells high in PL scramblase (K-562, HEL, 293T, and EBV-transformed lymphocytes), whereas this response was markedly attenuated in cells with low amounts of the protein (Raji, MOLT-4, HL-60). To confirm this apparent correlation between PL scramblase expression and PS egress at elevated [Ca 2+ ] c , Raji cells were transfected with PL scramblase cDNA in pEGFP-C2, and stable transformants expressing various amounts of rGFP-PL scramblase fusion protein obtained. Clones expressing rGFP-PL scramblase showed plasma membrane-localized fluorescence and elevated PL scramblase antigen whereas clones expressing rGFP alone (transfected with pEGFP-C2 without insert) showed only cytoplasmic fluorescence and served as controls. In absence of ionophore, expression of rGFP-PL scramblase had no effect on cell viability or background PS exposure. In response to A23187, clones expressing GFP-PL scramblase exhibited markedly accelerated movement of PS to the cell surface when compared to A23187-treated clones expressing GFP with PS movement to the cell surface increasing with amount of rGFP-PL scramblase expressed. These data indicate that transfection with PL scramblase cDNA promotes [Ca 2+ ] c C-dependent movement of PS to the cell surface and suggest that this protein normally mediates redistribution of plasma membrane phospholipids in activated, injured, or apoptotic cells exposed to elevated [Ca 2+ ]C.

B. Materials and Methods

Materials. All restriction enzymes were from New England BioLabs, Inc. (Beverly, Mass.). Klentaq polymerase and pEGFP-C2 vector were from CLONTECH Laboratories (Palo Alto, Calif.). Bovine coagulation factor Va (FVa), factor Xa (FXa), prothrombin and dansylarginine-N-(3-ethyl-1,5-pentanediyl)amide were from Haematologic Technologies, Inc. (Essex Junction, Vt.). Chromogenic thrombin substrate S2238 was from DiaPharma Group, Inc. (Franklin, Ohio). Human a-thrombin was a generous gift from Dr. John W. Fenton (Albany, N.Y.). OPTI-MEM and geneticin were from Life Technologies (Gaithersburg, Md.). Fetal bovine serum, RPMI 1640, Cell Dissociation Solution, Hank's Balanced Salt Solution (HBSS), Protein A Sepharose-CL4B, leupeptin, and BSA were from Sigma Chemical Co. (St. Louis, Mo.). UltraLink Iodoacetyl resin and SuperSignal ULTRA Chemiluminescence Kit were from Pierce Chemical Co. (Rockford, Ill.). All other chemicals were of reagent grade.

Cell culture: Human cancer cell lines erythroleukemic HEL, promyelocytic leukemia HL-60, chronic myelogenous leukemia K562, lymphoblastic leukemia MOLT-4, acute T-cell leukemia Jurkat, Burkitt's lymphoma Raji, and megakaryocytic DAMI were from American Type Culture Collection (Rockville, Md.) and cultured in RPMI 1640 containing 10% fetal bovine serum. EBV-transformed cell line W9 established from peripheral B-lymphocytes of a normal donor was maintained as previously described (H. Kojima, et al., 1994).

Antibodies: Anti-GFP: murine monoclonal antibody against green fluorescent protein (GFP) was from CLONTECH Laboratories. Anti-FVa: murine monoclonal antibody V237 reactive against human or bovine factor Va light chain was the generous gift of Dr. Charles T. Esmon (Oklahoma Medical Research Fndn, Oklahoma City, Okla.). Anti-PL Scramblase-E306-W318: Rabbit antibody raised against the carboxyl terminal peptide sequence E306-W318 of human PL scramblase has previously been described (Q. Zhou, et al., supra, 1997). The IgG fraction was isolated on protein A-Sepharose-CL4B and the peptide-reactive antibody purified by affinity chromatography on peptide [Cys]-ESTGSQEQKSGVW (SEQ ID NO:5) coupled to UltraLink Iodoacetyl resin.

Plasmid Construction: Human PL scramblase cDNA insert was released from plasmid pMAL-C2-PL scramblase (Q. Zhou, et al., supra, 1997) by double cutting with EcoRI and SalI, respectively, and then ligated into pEGFP-C2 vector using the same restriction site. The pEGFP-C2-PL scramblase plasmid was amplified from single clones in E. coli strain Top 10, and the orientation and reading frame of the insert confirmed by sequencing on an ABI DNA Sequencer Model 373 Stretch (Perkin Elmer-Applied Biosystems, Foster City, Calif.) using PRISM Ready Reaction DyeDeoxy Terminator Cycle Sequencing Kit.

Transfection of Raji cells with pEGFP-PL scramblase. 1.6×10 7 Raji cells were electroporated with 160 μg plasmid DNA (pEGFP-C2-PL scramblase or pEGFP-C2) in a total volume of 0.8 ml OPTI-MEM, using Gene Pulse Electroporator (Bio-Rad Laboratories, Hercules, CA) set at 450 V, 500 μF. After 48 hours in culture, 1.5 mg/ml geneticin was added to the medium and continuously maintained for 4 weeks. Stable transformants exhibiting GFP fluorescence were sorted by flow cytometry (FACStar, Becton-Dickinson Immunocytometry Systems, San Jose, Calif.) using an FL1 sorting gate. The FL1-positive cells were dilutionally cloned in 96 well culture plates. PEGFP-PL scramblase transformants expressing the 62 kDa GFP-PL scramblase fusion protein were identified by Western blotting with anti-GFP and with anti-PL-306-W318 antibodies. Western blotting of pEGFP-C2 transformants (without insert) confirmed presence of 27 kDa GFP. Clones expressing various amounts of GFP-PL scramblase were each expanded for functional assay, along with comparable GFP-expressing clones serving as controls.

Fluorescence Microscopy. Cell clones transfected with pEGPF-C2-PL scramblase or pEGFP-C2 were deposited on glass microscopy slides using a Cytospin 3 (Shandon, Inc., Pittsburgh, Pa.). Phase contrast and fluorescence microscopy was performed with a ZEISS AXIOSKOP microscope (Carl Zeiss, Inc., Thornwood, N.Y.) equipped for epifluorescence, and images were recorded with a MC100 camera system. The exposure times for photography of fluorescence was 80-200 seconds under automatic control using Kodak Ektachrome 1600 film.

Western Blot Analysis. Western blotting of GFP and PL scramblase antigens was performed using 1.5×10 6 cells per lane. After washing in HBSS, supernatants were removed, and the cell pellets extracted with 2% (v/v) NP-40 in 5 mM EDTA, 50 mM benzamidine, 50 mM N-ethyl maleimide, 1 mM phenylmethylsulfonyl fluoride, 1 mM leupeptin in HBSS. After removal of insoluble material (250,000×g, 30 minutes, 4° C.), the samples were denatured at 100° C. in 10% (w/v) SDS sample buffer containing 2% β-mercaptoethanol. Following SDS-PAGE and transfer to nitrocellulose, the blocked membrane was incubated with either 10 μg/ml of rabbit anti-PL scramblase-E306-W318, or {fraction (1/10,000)} dilution of mouse anti-GFP. The blots were developed with the horseradish peroxidase conjugate of either goat anti-rabbit IgG or goat anti-mouse IgG, respectively, using SuperSignal ULTRA chemiluminescence.

Measurement of cell surface PS. Calcium ionophore-induced exposure of PS on the surface of all cell lines analyzed was detected by the specific binding of coagulation factor Va (light chain) as previously described (P. J. Sims, et al., J. Biol. Chem. 263:18205-18212, 1988; H. Kojima, et al., J. Clin. Invest. 94:2237-2243, 1994). Briefly, cells were washed twice to remove serum proteins and suspended (2×10 6 cells/ml) at 37° C. in RPMI 1640 supplemented with 0.1% BSA, 20 mM HEPES, and adjusted to 1.2 mM free [Ca 2+ ]. At time=0, A23187 (0 or 2 μM final concentration) was added from 1 mM stock solution in DMSO, and at times indicated in figure legends, the reaction was stopped by addition of 6 mM EGTA. PS exposed on the cell surface at each time point was detected by incubating (10 minutes, room temperature) 50 μl of the cell suspension with 10 μg/ml FVa, followed by 10 μg/ml anti-FVa, to detect the cell-bound FVa light chain. After staining with 10 μg/ml Tri-Color conjugated goat anti-mouse IgG (CALTAG Laboratories, Burlingame, Calif.), single-cell fluorescence was quantitated by flow cytometry (FL3 channel, FACScan, Becton Dickinson Immunocytometry Systems). Use of Tri-Color conjugate to detect cell-bound FVa enabled simultaneous measurement of cell-associated GFP fluorescence in cell lines transformed with the pEGFP-C2 expression plasmid (fluorescence of GFP detected in FL1 channel). In experiments in which cell lysis was monitored by uptake of propidium iodide, cells were stained for bound FVa with FITC-conjugate of goat anti-mouse IgG (FL1 channel) substituting for Tri-Color conjugate, and propidium iodide was detected in FL3 channel. Propidium iodide (0.5 μg/ml) was added immediately before dilution for flow cytometry.

Prothrombinase Assay. Prothrombinase activity of Raji cells was determined by modification of methods previously described for platelets, using the chromogenic thrombin substrate S2238 (P. J. Sims, et al., supra, 1988). Briefly, 1×10 5 Raji cells (transfected with either pEGFP-C2 or pEGFP-C2-PL scramblase) were suspended in 200 μl HBSS containing 1% BSA in the presence of 2 nM FVa, 1.4 μM prothrombin 2.5 mM CaCl 2 , and 4 μM dansylarginine-N-(3-ethyl-1,5-pentanediyl)amide (to inhibit feed-back activation by thrombin), and incubated at 37° C. Ca 2+ -ionophore A23187 (2 μM), or DMSO (as solvent control) was added, and prothrombin conversion was initiated by addition of 2 nM Fxa. Thrombin generation was stopped after 2 minutes by dilution into 10 mM EGTA and samples were stored on ice. Aliquots were transferred to a 96-well plate, and thrombin generated was assayed in TBS containing 1% BSA in presence of 150 PIM S2238 by monitoring time-dependent changes in absorbance at 405 nm using a Thermomax plate reader (Molecular Devices, Sunnyvale, Calif.). Thrombin activity was calculated using purified thrombin as standard.

C. Results

Analysis of PL scramblase in various human cell lines. Proteoliposomes reconstituted with erythrocyte PL scramblase exhibit accelerated transbilayer movement of fluorescent phospholipids in response to added Ca 2+ , similar to the observed effect of calcium on the endofacial surface of the red cell membrane (Q. Zhou, et al., supra, 1997; J. G. Stout, et al., J. Clin. Invest. 99:2232-2238, 1997; Bassè, et al., J. Biol. Chem. 271:17205-17210, 1996). In order to determine whether this same protein is responsible for mediating the accelerated egress of plasma membrane PS that is observed under conditions of elevated cytosolic [Ca 2+ ] c , we undertook to determine whether the level of expression of PL scramblase in various human cell lines correlated to the induced movement of PS to the surface of these cells. When challenged with a calcium ionophore, human cell lines exhibit considerable differences in the extent to which PS is mobilized to the cell surface. Among the cells tested, Raji, HL60, and Dami were notably unresponsive to A23187, whereas HEL, W9 (an EBV-transformed normal B-lymphocyte), and Jurkat showed notably robust responses. This apparent cell type-specific variability in response to induced elevation of [Ca 2+ ] c was consistently maintained through many months of passage in culture, suggesting it reflected an inherent property of each cell line. As shown in FIG. 8 , we also observed considerable differences in the content of PL scramblase protein among these various cell lines, and the sensitivity of these various cell lines to induced exposure of plasma membrane PS (lower panel) generally correlated with the amount of cellular PL scramblase protein detected by Western blotting (upper panel): Those cell lines that were most responsive to induced elevation of [Ca 2+ ] c (HEL, W9, Jurkat) also expressed greatest amounts of PL scramblase antigen, whereas cell lines with attenuated response to [Ca 2+ ] c (Raji, HL60, Dami) contained relatively little of this protein. Cell lines Molt-4 and K562 showed intermediate responses to elevated [Ca 2+ ] c and expressed intermediate levels of PL scramblase antigen.

FIG. 8 depicts western blot analysis of PL scramblase in various human cell lines. Constitutive expression of PL scramblase was analyzed in the human cell lines indicated. Upper Panel: Results obtained by Western blotting with antibody specific for PL scramblase carboxyl terminal residues E306-W318 (see Materials & Methods). Each lane contains the total protein extract of 1.5×10 6 cells. Lower Panel: Cumulative results of three separate experiments performed as follows: The cells indicated were washed and suspended at 37° C. in the presence of 1.2 mM free Ca 2+ , and 2 μM A23187 was added. At times shown (abscissa), EGTA was added and cells analyzed for surface exposed PS as detected by cell-bound FVa light chain (see Materials and Methods ). Data plotted represent the mean increase (± SD) in number of cells that stained positive for surface PS after 5 minutes incubation with ionophore, after correction for initial background of PS-positive cells before addition of ionophore (time=0). Background number of cells that exposed PS in absence of ionophore was always <15% except in case of HEL, where this background ranged between 15-30%.

These relatively large differences in cell line-specific expression of this protein was also consistently observed despite repeated passage in culture, and was found to correspond to marked differences in level of specific mRNA as detected by Northern blotting with PL scramblase cDNA (Q. Zhou, et al., supra, 1997), and data not shown). We also noted that those cell lines with the highest content of PL scramblase generally exhibited a higher background of PS exposed on the surface in absence of added ionophore. This was most notable for HEL for which approximately 15-30% of the cells were consistently found to expose PS prior to addition of A23187 (see Discussion).

Membrane chances underlying ionophore response. In order to determine whether the increase in PS exposure in ionophore-treated cells reflected facilitated movement of PS from inner to outer leaflets of the plasma membrane, or, greater sensitivity of the plasma membrane to lytic disruption, FVa binding to the cell surface was monitored simultaneously with uptake of propidium iodide, as a measure of cell lysis. As illustrated for the human B-lymphocyte lines W9 (high content of PL scramblase) and Raji (low content of PL scramblase), the induced movement of PS to the cell surface was found to precede uptake of propidium iodide, suggesting that the elevation of [Ca 2+ ], induces a collapse of transmembrane PL asymmetry before onset of lysis. In the case of Raji cells which are virtually devoid of PL scramblase (see FIG. 8 ), a general insensitivity of the plasma membrane to either ionophore-induced PS exposure or to lysis was also apparent.

Transfection of the Raji cell line with pEGFP-C2-PL scramblase. In order to confirm that the extent to which PS moves to the cell surface with elevation of [Ca 2+ ], actually depends upon the plasma membrane content of PL scramblase, we stably transformed Raji, a cell line exhibiting low endogenous PL scramblase expression by transfection with plasmid pEGFP-C2-PL scramblase. This plasmid expresses PL scramblase as a fusion protein with green fluorescent protein (GFP), facilitating flow cytometric sorting of transformants for subsequent cloning and detection of the expressed recombinant protein in selected clones. The decision to attach GFP to the amino terminus of PL scramblase was based on prior evidence that the carboxyl terminus of the protein is membrane inserted and essential for function, and the observation that other amino terminal fusion constructs of PL scramblase expressed in E. coli retained the same activity of the unmodified PL scramblase polypeptide when reconstituted in proteoliposomes (Q. Zhou, et al., supra, 1997), and unpublished data). The expression of the full-length GFP-PL scramblase fusion protein in selected transformed clones was confirmed by Western blotting with antibody specific for GFP, and with antibody raised against peptide sequence of the carboxyl terminus of human PL scramblase. As illustrated by fluorescence micrographs shown in FIG. 9 , clones that expressed the GFP-PL scramblase fusion protein showed a distinct rim appearing pattern of fluorescence, consistent with trafficking of GFP-PL scramblase to the plasma membrane. FIG. 9 illustrates fluorescence micrographs of GFP-PL scramblase transformed Raji cells. Fluorescence photomicrography of GFP fluorescence expressed in the transformed Raji clones was performed as described in Materials and Methods. FIG. 9A shows fluorescence of cells expressing GFP; FIG. 9B shows cells transfected with pEGFP-C2-PL scramblase plasmid and expressing GFP-PL scramblase fusion protein. Data of single experiment, representative of results obtained for all clones transfected with either pEGFP-C2 or pEGFP-C2-PL scramblase. By contrast, clones that expressed GFP alone exhibited diffuse fluorescence throughout the cytoplasm, with no obvious staining of the plasma membrane. These data provide the first direct evidence that PL scramblase cDNA encodes a protein that predominantly trafficks to the plasma membrane under normal conditions of cell growth.

Analysis of PS mobilizing function in GFP-PL scramblase transformants. After geneticin selection, clonal populations of transformed Raji cells expressing comparable levels of either GFP-PL scramblase or GFP (transformed with pEGFP-C2 lacking insert) were analyzed for their capacity to mobilize PS to the cell surface. In response to an A23187-induced elevation of [Ca 2+ ] c , transformants expressing the GFP-PL scramblase fusion construct showed a marked increase in both the rate and extent that PS became exposed on the cell surface, when compared to either the identically-treated parental Raji cell line or to GFP-expressing clones transformed with pEGFP-C2 vector alone. As was also evident from these data, in the absence of ionophore, we consistently noted a small but reproducible increase in the background level of PS exposure in transformants expressing GFP-PL scramblase protein, when compared to either the parental Raji cell lines or to GFP-expressing clones transformed with vector alone.

Induction of membrane procoagulant function through expression of PL scramblase. In order to confirm that the increased expression of FVa binding sites detected upon activation of GFP-PL scramblase transformed clones reflected an increase in the procoagulant (clot-promoting) properties of the plasma membrane of these cells, the capacity of GFP-PL scramblase transformed cells to provide catalytic membrane surface for the prothrombinase (FVaXa) enzyme complex was compared to clones expressing GFP alone. These data confirmed that expression of recombinant PL scramblase in the Raji cell line was also accompanied by an increase in cell capacity to catalyze the prothrombinase reaction upon entry of calcium into the cytosol.

Level of expression of PL scramblase regulates capacity of to mobilize PS to the cell surface. In order to confirm the apparent correlation between endogenous cell content of PL scramblase and plasma membrane sensitivity to elevated [Ca 2+ ] c that is evident when different human cell lines are compared (see FIG. 8 ), we analyzed multiple Raji clones that were stably transfected with either GFP-PL scramblase or with GFP vector alone (FIG. 10 ). FIG. 10 illustrates that the level of expression of PL scramblase determines plasma membrane sensitivity to intracellular Ca 2+ . The relationship between level of recombinant protein expressed (GFP fluorescence detected in FL1 channel; abscissa) and numbers of cells that expose PS after 2 minutes incubation with A23187 (ordinate) is plotted for multiple transformed Raji clones. Analysis was gated to include only those cells distinctly positive for GFP fluorescence (FL1 channel), and cell-bound FVa was stained with Tri-color conjugate and detected in FL3 channel (see Materials and Methods ). Analysis was performed on all cells positive for GFP fluorescence. ; Open symbols indicate individual clones stably transformed by transfection with pEGFP-C2; closed symbols indicate individual clones stably transformed with pEGFP-PL scramblase. Data of single experiment, representative of three so performed. These experiments confirm that the capacity of GFP-PL scramblase transformants to mobilize PS to the cell surface generally correlates with the amount of the expressed GFP-PL scramblase fusion protein, whereas this cell response to increased [Ca 2+ ] c is unaffected by cell content of GFP. In addition to confirming the role of PL scramblase in the plasma membrane response to [Ca 2+ ] c , these data suggest that the capacity to mobilize PS to the cell surface and thereby support plasma clotting in activated, injured or apoptotic cells exposed to elevated [Ca 2+ ] c can be altered by changing the level of expression of PL scramblase expressed in the plasma membrane.

Discussion

These results provide the first evidence that the PL scramblase protein identified in the erythrocyte membrane and implicated in [Ca 2+ ] c -induced remodeling of membrane phospholipids actually functions to induce accelerated transbilayer movement of plasma membrane phospholipid in human cells that express this protein. Our results also confirm that the level of expression of plasma membrane PL scramblase can determine the extent to which PS is mobilized to the cell surface upon elevation of [Ca 2+ ] c , and suggest that this protein normally functions to mediate the redistribution of plasma membrane phospholipids in response to the entry of calcium into the cytosol. Furthermore, these data provide the first indication that the movement of PS and other procoagulant aminophospolipids from plasma membrane inner leaflet to the cell surface can be manipulated by selectively altering the level of expression of a particular cellular protein, either through direct transfection with the PL scramblase cDNA, or potentially, by another intervention affecting cellular expression of functional PL scramblase protein.

Whereas these experiments suggest that direct activation of plasma membrane PL scramblase is responsible for the increased cell surface exposure of PS that is observed in various activated, injured or apoptotic cells exposed to elevated [Ca 2+ ] c , we cannot exclude the possibility that there are other cellular components that contribute to the accelerated movement of PS from inner to outer plasma membrane leaflet under these conditions. In particular, whereas PL scramblase has been shown to mediate the bidirectional movement of PS and other phospholipids between membrane leaflets, it has been suggested that there is also a PS-selective pathway in the platelet plasma membrane, designated “PS floppase”, which mediates vectorial movement of PS from inner to outer plasma membrane leaflet (P. Gaffet, et al., Biochemistry 34:6762-6769. 1995). Experimental evidence for the existence of this vectorial and headgroup-selective PS floppase pathway in platelet or other cell membranes remains controversial (R. F. A. Zwaal, et al., supra, 1997; P. Williamson, et al., Biochemistry 31:6355-6360, 1995; C. -P. Chang, et al., J. Biol. Chem. 268:7171-7178, 1993), and awaits identity of a [Ca 2+ ] c -activated and PS-selective transporter that is distinct from the plasma membrane PL scramblase found in platelets and erythrocytes, a protein that does not exhibit apparent selectivity for the PS headgroup (J. G. Stout, et al., supra, 1997; P. Comfurius, et al., Biochemistry 35,7631-7634, 1996; F. Bassè, et al., supra, 1996).

In addition to conferring increased sensitivity of the plasma membrane to ionophore-induced elevation of [Ca 2+ ] c , we generally observed a higher background of PS exposure (in absence of ionophore) in those transfected cell clones expressing large amounts of the GFP-PL scramblase fusion protein. This elevated background PS exposure was also observed in the case of untreated HEL, the cell line containing the highest endogenous content of PL scramblase. Although we suspect that this increased background reflects the enhanced sensitivity of the plasma membrane of these cells to any adventitial elevation of [Ca 2+ ] c during cell processing for assay, we cannot exclude the possibility that these cells are also inherently more fragile due to the large amounts of PL scramblase that is inserted into the plasma membrane.

While the movement of plasma membrane PS to the cell surface at elevated [Ca 2+ ] c can be demonstrated in a variety of cells and tissues (R. F. A. Zwaal, et al., supra, 1997; P. Devaux, supra, 1991), we detect marked differences in the levels of PL scramblase mRNA and protein among different human cell types, which is generally reflected by corresponding differences in sensitivity to this [Ca 2+ ]-induced collapse of plasma membrane PL asymmetry (see FIG. 8 , and Q. Zhou, et al., supra, 1997). Although the transcriptional regulation of the PL scramblase gene remains to be determined, it is of interest to note that such cell or tissue-specific differences in PL scramblase expression has the potential to significantly affect the biological properties of the cell. In particular, we note that the content of PL scramblase in human platelet is approximately 10-fold greater than that of the erythrocyte, which is consistent with the respective PS-mobilizing potential and different roles of these two cells in contributing procoagulant membrane surface for thrombin generation during blood clotting (Q. Zhou, et al., supra, 1997). In addition to the relatively high levels of PL scramblase identified in circulating human platelets, this protein was also most abundant in the cell line HEL, whereas only small amounts of this protein (and low PL scramblase activity) was detected for Dami (FIGS. 8 ), two human cancer cell lines exhibiting partial megakaryocytic-like properties. It is also noteworthy that several of the lymphoma-derived cell lines (e.g., Raji, MOLT-4) express considerably reduced levels of PL scramblase, and also show distinctly attenuated PS exposure in response to elevated [Ca 2+ ] c , when compared to either peripheral blood leukocytes or to EBV-transforms of normal lymphocytes (FIG. 8 ). The collapse of plasma membrane phospholipid asymmetry is a relatively early event in apoptosis of lymphocytes and other cells, and the consequent exposure of PS on the cell surface is thought to contribute to phagocytic removal of such cells by scavenger macrophages (V. A. Fadok, et al., J. Immunol. 148:2207-2216, 1992; B. Verhoven, et al., J. Exp. Med. 182:1597-1601, 1995). It is therefore of interest to consider whether the apparent resistance of certain lymphoma-derived cell lines to such [Ca 2+ ] c -induced remodeling of plasma membrane phospholipids might contribute to the proliferative potential and in vivo survival of these or other transformed cells.

EXAMPLE 4

Inactivation of Human PL Scramblase by Treatment With the Thiolester Cleaving Reagent, Hydroxylamine

A. Summary

Incubation of human erythrocyte PL scramblase with hydroxylamine under conditions known to favor hydrolysis of protein cysteinyl-fatty acyl bonds was found to cause near complete loss of PL scramblase's function in promoting movement of PL between membrane leaflets. These data suggest that for normal activity, the PL scramblase polypeptide requires post translational modification through addition of a thiolester-linked fatty acid. Furthermore, these data imply that methods that either prevent cellular acylation of the polypeptide, or that cleave cysteinyl thiolester linkages, will effectively inhibit endogenous PL scramblase activity.

B. Methods

Protein purification. PL scramblase was purified from human erythrocyte ghost membranes as previously described (F. Bassè, et al.,supra, 1996; J. G. Stout, et al., supra, 1997).

Treatment with Hydroxylamine. PL scramblase was incubated 1 hour room temperature in 1 M hydroxylamine, 25 mM octylglucoside, 1 M Tris-HCl at pH 7.4. Match control samples of the protein were identically incubated under these conditions, omitting hydroxylamine. After incubation, samples were dialyzed and reconstituted into PL proteoliposomes for assay of PL scramblase activity.

Membrane reconstitution and assay. PL scramblase was reconstituted into proteliposomes and activity determined as previously described(F. Bassè, et al., supra, 1996; J. G. Stout, et al, supra, 1997).

C. Results and Discussion

As shown in FIG. 11 , incubation with hydroxylamine resulted in nearly complete inactivation of PL scramblase. FIG. 11 illustrates inactivation of PL scramblase by hydroxylamine. Purified human erythrocyte PL scramblase was incubated 1 hour, room temperature, in the presence of 50 mM octylglucoside, 1M TrisHCl, and either 0 (control) or 1M (hydroxylamine) hydroxylamine at pH 7.2. Untreated refers to sample maintained in low ionic strength sample buffer at 4° C. Each sample was then dialyzed and reconstituted into proteoliposomes for assay of PL scramblase activity using NBD-PC as detailed in Bassè, et al., supra, 1996 with modifications of Stout, et al., supra, 1997. Ordinate indicates percent of total NBD-PC flipped during 3 hours. Incubation was in 2 mM Ca 2+ , with correction for background measured in 0.1 mM EGTA. The error bars denote mean ± SD, n=7. Combined data of three independent experiments performed on different days.

Because the conditions of incubation (neutral pH) were chosen to favor specific cleavage of cysteinyl thioester bonds without disulfide bond reduction, these results imply an essential thioester linkage within the protein. In a membrane-associated protein with cytoplasmic Cys residues, such as found in erythrocyte PL scramblase, this thiolester bond is normally provided by palmitic acid in ester linkage to one or more cysteinyl thiols.(H. Schroeder, et al., J. Cell Biol. 134:647-660, 1996; M. Stauffenbiel, J. Biol. Chem. 263:13615-13622, 1988; C. A. Wilcox, et al., Biochemistry 26:1029-1036, 1987). Whereas the possibility of disulfide reduction by hydroxylamine cannot be excluded, it is important to note that (1) virtually all cysteine residues in PL scramblase are normally exposed to cytoplasmic reducing agents such as glutathione, and disulfide bonds formation is therefore not anticipated and (2) The absence of any functionally-important disulfide bonds in PL scramblase can be assumed based on the retention of normal PL scramblase activity when the protein was incubated in various reducing agents, including dithiothreitol (F. Bassè, et al., supra, 1996; J. G. Stout, et al., supra, 1997). Thus these data suggest that PL scramblase polypeptide requires post-translational modification through addition of a thiolester-linked fatty acid for its normal function in the plasma membrane. Furthermore, these data imply that reagents that either prevent cellular acylation of the polypeptide, or, reagents that cleave cysteinyl thiolester linkages, will effectively inhibit endogenous PL scramblase activity.

9 1445 base pairs nucleic acid double linear cDNA unknown 1CGCGGCCGCG TCGACCGAAA CCAGGAGCCG CGGGTGTTGG CGCAAAGGTT ACTCCCAGAC 60CCTTTTCCGG CTGACTTCTG AGAAGGTTGC GCAGCAGCTG TGCCCGACAG TCTAGAGGCG 120CAGAAGAGGA AGCCATCGCC TGGCCCCGGC TCTCTGGACC TTGTCTCGCT CGGGAGCGGA 180AACAGCGGCA GCCAGAGAAC TGTTTTAATC ATGGACAAAC AAAACTCACA GATGAATGCT 240TCTCACCCGG AAACAAACTT GCCAGTTGGG TATCCTCCTC AGTATCCACC GACAGCATTC 300CAAGGACCTC CAGGATATAG TGGCTACCCT GGGCCCCAGG TCAGCTACCC ACCCCCACCA 360GCCGGCCATT CAGGTCCTGG CCCAGCTGGC TTTCCTGTCC CAAATCAGCC AGTGTATAAT 420CAGCCAGTAT ATAATCAGCC AGTTGGAGCT GCAGGGGTAC CATGGATGCC AGCGCCACAG 480CCTCCATTAA ACTGTCCACC TGGATTAGAA TATTTAAGTC AGATAGATCA GATACTGATT 540CATCAGCAAA TTGAACTTCT GGAAGTTTTA ACAGGTTTTG AAACTAATAA CAAATATGAA 600ATTAAGAACA GCTTTGGACA GAGGGTTTAC TTTGCAGCGG AAGATACTGA TTGCTGTACC 660CGAAATTGCT GTGGGCCATC TAGACCTTTT ACCTTGAGGA TTATTGATAA TATGGGTCAA 720GAAGTCATAA CTCTGGAGAG ACCACTAAGA TGTAGCAGCT GTTGTTGTCC CTGCTGCCTT 780CAGGAGATAG AAATCCAAGC TCCTCCTGGT GTACCAATAG GTTATGTTAT TCAGACTTGG 840CACCCATGTC TACCAAAGTT TACAATTCAA AATGAGAAAA GAGAGGATGT ACTAAAAATA 900AGTGGTCCAT GTGTTGTGTG CAGCTGTTGT GGAGATGTTG ATTTTGAGAT TAAATCTCTT 960GATGAACAGT GTGTGGTTGG CAAAATTTCC AAGCACTGGA CTGGAATTTT GAGAGAGGCA 1020TTTACAGACG CTGATAACTT TGGAATCCAG TTCCCTTTAG ACCTTGATGT TAAAATGAAA 1080GCTGTAATGA TTGGTGCCTG TTTCCTCATT GACTTCATGT TTTTTGAAAG CACTGGCAGC 1140CAGGAACAAA AATCAGGAGT GTGGTAGTGG ATTAGTGAAA GTCTCCTCAG GAAATCTGAA 1200GTCTGTATAT TGATTGAGAC TATCTAAACT CATACCTGTA TGAATTAAGC TGTAAGGCCT 1260GTAGCTCTGG TTGTATACTT TTGCTTTTCA AATTATAGTT TATCTTCTGT ATAACTGATT 1320TATAAAGGTT TTTGTACATT TTTTAATACT CATTGTCAAT TTGAGAAAAA GGACATATGA 1380GTTTTTGCAT TTATTAATGA AACTTCCTTT GAAAAACTGC TTTAAAAAAA AGTCGACGCG 1440GCCGC 1445 318 amino acids amino acid double linear protein unknown 2Met Asp Lys Gln Asn Ser Gln Met Asn Ala Ser His Pro Glu Thr Asn1 5 10 15Leu Pro Val Gly Tyr Pro Pro Gln Tyr Pro Pro Thr Ala Phe Gln Gly 20 25 30Pro Pro Gly Tyr Ser Gly Tyr Pro Gly Pro Gln Val Ser Tyr Pro Pro 35 40 45Pro Pro Ala Gly His Ser Gly Pro Gly Pro Ala Gly Phe Pro Val Pro 50 55 60Asn Gln Pro Val Tyr Asn Gln Pro Val Tyr Asn Gln Pro Val Gly Ala65 70 75 80Ala Gly Val Pro Trp Met Pro Ala Pro Gln Pro Pro Leu Asn Cys Pro 85 90 95Pro Gly Leu Glu Tyr Leu Ser Gln Ile Asp Gln Ile Leu Ile His Gln 100 105 110Gln Ile Glu Leu Leu Glu Val Leu Thr Gly Phe Glu Thr Asn Asn Lys 115 120 125Tyr Glu Ile Lys Asn Ser Phe Gly Gln Arg Val Tyr Phe Ala Ala Glu 130 135 140Asp Thr Asp Cys Cys Thr Arg Asn Cys Cys Gly Pro Ser Arg Pro Phe145 150 155 160Thr Leu Arg Ile Ile Asp Asn Met Gly Gln Glu Val Ile Thr Leu Glu 165 170 175Arg Pro Leu Arg Cys Ser Ser Cys Cys Cys Pro Cys Cys Leu Gln Glu 180 185 190Ile Glu Ile Gln Ala Pro Pro Gly Val Pro Ile Gly Tyr Val Ile Gln 195 200 205Thr Trp His Pro Cys Leu Pro Lys Phe Thr Ile Gln Asn Glu Lys Arg 210 215 220Glu Asp Val Leu Lys Ile Ser Gly Pro Cys Val Val Cys Ser Cys Cys225 230 235 240Gly Asp Val Asp Phe Glu Ile Lys Ser Leu Asp Glu Gln Cys Val Val 245 250 255Gly Lys Ile Ser Lys His Trp Thr Gly Ile Leu Arg Glu Ala Phe Thr 260 265 270Asp Ala Asp Asn Phe Gly Ile Gln Phe Pro Leu Asp Leu Asp Val Lys 275 280 285Met Lys Ala Val Met Ile Gly Ala Cys Phe Leu Ile Asp Phe Met Phe 290 295 300Phe Glu Ser Thr Gly Ser Gln Glu Gln Lys Ser Gly Val Trp305 310 315 1622 base pairs nucleic acid double linear cDNA unknown 3TCTAAAGACT CAGGAAACAA AACCTAAATT GCCTCAAAGT TCAGGTGCTT TTTCTCCCTG 60ACTTTAGTCT AGTGGAGTAG TGCAGCACCT ATGCCTTTCT GAGAGGAGTC TGGAGAGCTG 120AGTCGCTGCT GGTGCTAGGA TTCTAGGAAT TCGCCTCACT TGGAGCTGCA TGAGAAAAGA 180AAGGCTTGCA AATGGAGGCT CCTCGCTCAG GAACATACTT GCCAGCTGGG TATGCCCCTC 240AGTATCCTCC AGCAGCAGTC CAAGGACCTC CAGAGCATAC TGGACGCCCC ACATTCCAGA 300CTAACTACCA AGTTCCCCAG TCTGGTTATC CAGGACCTCA GGCTAGCTAC ACAGTCTCAA 360CATCTGGACA TGAAGGTTAT GCTGCTACAC GGCTTCCTAT TCAAAATAAT CAGACTATAG 420TCCTTGCAAA CACTCAGTGG ATGCCAGCAC CACCACCTAT TCTGAACTGC CCACCTGGGC 480TAGAATACTT AAATCAGATA GATCAGCTTC TGATTCATCA GCAAGTTGAA CTTCTAGAAG 540TCTTAACAGG CTTTGAAACA AATAACAAAT TTGAAATCAA GAACAGCCTC GGGCAGATGG 600TTTATGTTGC AGTGGAAGAT ACTGACTGCT GTACTCGAAA TTGCTGTGAA GCGTCTAGAC 660CTTTCACCTT AAGAATCCTG GATCATCTGG GCCAAGAAGT CATGACTCTG GAGCGACCTC 720TGAGATGCAG TAGCTGCTGC TTCCCCTGCT GCCTCCAGGA GATAGAAATC CAGGCTCCTC 780CGGGGGTGCC AATAGGTTAT GTGACTCAGA CCTGGCACCC ATGTCTGCCA AAGCTCACTC 840TTCAGAACGA CAAGAGGGAG AATGTTCTAA AAGTAGTTGG TCCATGTGTT GCATGCACCT 900GCTGTTCAGA TATTGACTTT GAGATCAAGT CTCTTGATGA AGTGACTAGA ATTGGTAAGA 960TCACCAAGCA GTGGTCTGGT TGTGTGAAAG AGGCCTTCAC GGATTCGGAT AACTTTGGGA 1020TCCAATTCCC GCTAGACCTG GAGGTGAAGA TGAAAGCTGT GACGCTTGGT GCTTGCTTCC 1080TCATAGATTA CATGTTTTTT GAAGGCTGTG AGTAGGAACA GAAATCCGAC CTGCAGTAGG 1140AATCAATGAA AGAGGACAGA GAAGATCTGA AGTCTACACA AGGAGATCAT ATGATTGAGA 1200GACCTGGGGC TTTTTGATTT CTTCATTGAA ATTTCTCAGA ATCAAGCTGT TATACATGAA 1260GCATAGTATG TAACATTTTG GTTTTCAAAT GGTAGTTTAT CTTTTACATT ATTGGAATAG 1320ACCTGGATAA TTATCTTTAT ACACTTCTAA AAATATGCAC CAAATTCAAG TTAAAAAAAA 1380AAAGACGAAG AGAAGTGTAT GTTTTAAAAT AAAACATTTT ATGGAAAAGT AAGTTAAATC 1440ATAATCTGGG ATTTATTTTT CATCTTTTGT TCAATTTAAA CCTTGTTAGT GCTGATTTTA 1500TTATAAAATT GTACTTTACT ATCAAACCTA GTTAGTTTAT TTCTTACAGA AATCCTCCTA 1560TTATTTTGAA ATTACATATT TTTGAAAGCT TTTTAAAAGA TACTATTGCC TGGGAAATTC 1620TA 1622 307 amino acids amino acid double linear protein unknown 4Met Glu Ala Pro Arg Ser Gly Thr Tyr Leu Pro Ala Gly Tyr Ala Pro1 5 10 15Gln Tyr Pro Pro Ala Ala Val Gln Gly Pro Pro Glu His Thr Gly Arg 20 25 30Pro Thr Phe Gln Thr Asn Tyr Gln Val Pro Gln Ser Gly Tyr Pro Gly 35 40 45Pro Gln Ala Ser Tyr Thr Val Ser Thr Ser Gly His Glu Gly Tyr Ala 50 55 60Ala Thr Arg Leu Pro Ile Gln Asn Asn Gln Thr Ile Val Leu Ala Asn65 70 75 80Thr Gln Trp Met Pro Ala Pro Pro Pro Ile Leu Asn Cys Pro Pro Gly 85 90 95Leu Glu Tyr Leu Asn Gln Ile Asp Gln Leu Leu Ile His Gln Gln Val 100 105 110Glu Leu Leu Glu Val Leu Thr Gly Phe Glu Thr Asn Asn Lys Phe Glu 115 120 125Ile Lys Asn Ser Leu Gly Gln Met Val Tyr Val Ala Val Glu Asp Thr 130 135 140Asp Cys Cys Thr Arg Asn Cys Cys Glu Ala Ser Arg Pro Phe Thr Leu145 150 155 160Arg Ile Leu Asp His Leu Gly Gln Glu Val Met Thr Leu Glu Arg Pro 165 170 175Leu Arg Cys Ser Ser Cys Cys Phe Pro Cys Cys Leu Gln Glu Ile Glu 180 185 190Ile Gln Ala Pro Pro Gly Val Pro Ile Gly Tyr Val Thr Gln Thr Trp 195 200 205His Pro Cys Leu Pro Lys Leu Thr Leu Gln Asn Asp Lys Arg Glu Asn 210 215 220Val Leu Lys Val Val Gly Pro Cys Val Ala Cys Thr Cys Cys Ser Asp225 230 235 240Ile Asp Phe Glu Ile Lys Ser Leu Asp Glu Val Thr Arg Ile Gly Lys 245 250 255Ile Thr Lys Gln Trp Ser Gly Cys Val Lys Glu Ala Phe Thr Asp Ser 260 265 270Asp Asn Phe Gly Ile Gln Phe Pro Leu Asp Leu Glu Val Lys Met Lys 275 280 285Ala Val Thr Leu Gly Ala Cys Phe Leu Ile Asp Tyr Met Phe Phe Glu 290 295 300Gly Cys Glu305 14 amino acids amino acid single linear peptide unknown 5Cys Glu Ser Thr Gly Ser Gln Glu Gln Lys Ser Gly Val Trp1 5 10 39 base pairs nucleic acid single linear oligonucleotide unknown 6TCAGAATTCG GATCCATGGA CAAACAAAAC TCACAGATG 39 43 base pairs nucleic acid single linear oligonucleotide unknown 7GCTTGCCTGC AGGTCGACCT ACCACACTCC TGATTTTTGT TCC 43 38 base pairs nucleic acid single linear oligonucleotide unknown 8TCAGAATTCG GATCCATGGA GGCTCCTCGC TCAGGAAC 38 43 base pairs nucleic acid single linear oligonucleotide unknown 9GCTTGCCTGC AGGTCGACCT ACACACAGCC TTCAAAAAAC ATG 43

Claims

1. An isolated preparation of phospholipid scramblase, wherein the protein is approximately 35 Kd as measured on a 12.5% SDS-polyacrylamide gel under reducing conditions, wherein the scrambles is a naturally occuring phospholipids scramblase.

2. The preparation of claim 1 wherein the protein comprises SEQ ID NO:2.

3. The preparation of claim 1 wherein the protein comprises amino acid residues 85-309 of SEQ ID NO:2.

4. The preparation of claim 1 wherein the scramblase is a naturally occuring mouse phospholipid scramblase.

5. The preparation of claim 1, wherein the phospholipid scramblase comprises SEQ ID NO:4.

6. The preparation of claim 1, wherein the phospholipid scramblase comprises amino acid residues 83-307 of SEQ ID NO:4.

7. The preparation of claim 4 wherein the protein is isolated from mouse erythrocyte membranes.

8. A recombinant DNA sequence encoding PL scramblase, wherein the sequence is SEQ ID NO:1.

9. An isolated DNA sequence comprising nucleotides 211-1164 of SEQ ID NO:1.

10. An isolated DNA sequence comprising nucleotides 463-1137 sequence ID NO:1.

11. An isolated DNA sequence wherein the sequence is SEQ ID NO:3.

12. An isolated DNA sequence comprising nucleotides 192-1112 of SEQ ID NO:3.

13. An isolated DNA sequence comprising nucleotides 438-112 of SEQ ID NO:3.

14. An isolated DNA sequence wherein the sequence is SEQ ID NO:1 and wherein the sequence is part of a protein expression vector.

15. An isolated DNA sequence comprising nucleotides 211-1164 of SEQ ID NO:1 and wherein the sequence is part of a protein expression vector.

16. An isolated DNA sequence comprising nucleotides 463-1137 of SEQ ID NO:1 and wherein the sequence is part of a protein expression vector.

17. An isolated DNA sequence wherein the sequence is SEQ ID NO:3 and wherein the sequence is part of a protein expression vector.

18. An isolated DNA sequence wherein the sequence comprises 192-1112 of SEQ ID NO:3 and wherein the sequence is part of a protein expression vector.

19. An isolated DNA sequence comprising nucleotides 438-1112 of SEQ ID NO:3 and wherein the sequence is part of a protein expression vector.

20. A recombinant DNA sequence encoding PL scramblase, wherein the sequence has been modified to prevent post-translational modification in the encoded PL scramblase and wherein the sequence comprises a mutation with a non-functional equivalent substitution of residue Thr161 of SEQ ID NO:2; Thr159 of SEQ ID NO:4 or the equivalent residue in the conserved region of another PL scramblase.

21. A recombinant DNA sequence encoding PL scramblase, wherein the sequence has been modified to prevent post-translational modification in the encoded PL scramblase and wherein the sequence comprises at least one non-functional equivalent substitution within residues Asp273-Asp284 of SEQ ID NO:2; Asp271-Asp282 of SEQ ID NO:4 or the equivalent residue in the conserved region of another PL scramblase.

22. A recombinant DNA sequence encoding PL scramblase, wherein the sequence has been modified to prevent post-translational modification in the encoded PL scramblase and wherein the sequence comprises a mutation at Cys297 of SEQ ID NO:2 or the equivalent residue in the conserved region of another PL scramblase.

23. An isolated protein encoded by the sequence of claim 20.

24. An isolated protein encoded by the sequence of claim 21.

25. An isolated protein encoded by the sequence of claim 22.

26. A method of inhibiting expression of the coagulant properties of the plasma membrane of a cell comprising the step of expressing in the cell plasma membrane a mutant PL scramblase, wherein the PL scramblase has a reduced activity in mediating transmembrane movement of plasma membrane phospholipids, and wherein the mutant phospholipid scramblase comprises a non-functionally equivalent substitution at residue Thr161 of SEQ ID NO:2; Thr159 of SEQ ID NO:4 or the equivalent residue in the conserved region of-another PL scramblase.

27. A method of inhibiting expression of the coagulant properties of the plasma membrane of a cell comprising the step of delivering in the cell plasma membrane a mutant PL scramblase, wherein the PL scramblase has a reduced activity in mediating transmembrane movement of plasma membrane phospholipids, and wherein the mutant phospholipid scramblase comprises a non-functionally equivalent substitution of a cysteine residue wherein the cysteine residue to be substituted is Cys297 of SEQ ID NO:2 or Cys295 of SEQ ID NO:4.

28. A method of inhibiting expression of the coagulant properties of the plasma membrane of a cell comprising the step of delivering in the cell plasma membrane a mutant PL scramblase, wherein the PL scramblase has a reduced activity in mediating transmembrane movement of plasma membrane phospholipids, and wherein the mutant phospholipid scramblase comprises a non-functionally equivalent substitution of at least one of the residues located in the region of Asp273-Asp284 of SEQ ID NO:2;, Asp271-Asp282 of SEQ ID NO:4 or the equivalent residues in the conserved region of another PL scramblase.

29. A method of inhibiting expression of the coagulant properties of the plasma membrane of a cell comprising the step of delivering in the cell plasma membrane a mutant PL scramblase, wherein the PL scramblase has a reduced activity in mediating transmembrane movement of plasma membrane phospholipids, and wherein the mutant phospholipid scramblase comprises a non-functionally equivalent substitution of at least one residue selected from the group consisting of Asp273, Asp275, Phe277, Ile279, Phe281, and Asp284 of SEQ ID NO:2; and Asp271, Asp273, Phe275, Ile277, Phe279, and Asp282 of SEQ ID NO:4.