The present invention relates to AFM microscopy and near-field optical microscopy probes and, in particular, to a semiconductor-laser-integrated AFM optical probe capable of performing both conventional AFM measurements and near-field optical imaging and spectroscopy at the nanoscale.
While science and technology greatly benefit from AFM in surface characterization, optical imaging at the nanoscale, such as NSOM and TERS, lags far behind. Current AFM technology obtains information about the mechanical properties only. Hybrid AFM equipped with a specialized far-field optical microscope or NSOM are normally used to probe the optical properties of the sample. These techniques have limited applications since they are expensive and difficult to use.
We propose a novel class of laser-integrated optical probes for combined AFM/NSOM/TERS and Tip-Enhanced FTIR measurements. AFM optical probes (AOPs) are near-field optical probes that fit onto a conventional AFM and allow one to combine the high lateral resolution of AFM with near-field optical measurements. AOPs are considered to be a cost-effective alternative to expensive NSOMs and to various hybrids of AFMs equipped with specialized far-field optical microscopes.
In addition to unique imaging/spectroscopy capabilities, the semiconductor-laser-integrated AOP technology can be naturally extended to ultrafast pulsed (UFP) AOP technology that provides an exciting opportunity for obtaining both space- and time-resolved chemical information by way of ultrafast TERS measurements, and, most importantly, extends the AOP technology into the visible optical range by using nonlinear optical effects such as two-photon or three-photon excitation and detection. Integration of an external pulsed excitation source with TERS for time-resolved spectroscopy is very challenging [1]. In contrast, the UFP AOP technology naturally provides the ultrafast time-resolved spectroscopy capability. The integrated semiconductor laser sources with specialized gain media, such as InAs quantum dots, offer mode-locking capabilities for sub-picosecond pulse generation [2, 3]. Integrating the ultrafast pulsed laser source into a silicon cantilever AFM probe will allow probing the site-specific dynamic response of chemical systems. This imaging technique combining molecular scale spatial resolution and ultrafast temporal resolution can be applied, e.g., for exploring energy flow, molecular dynamics, breakage/formation of chemical bonds or conformational changes in nanoscale systems, and so on.
UFP AOP will also be of particular interest for tip-enhanced hyper-Raman spectroscopy (TEHRS) of biological samples. Hyper-Raman scattering (HRS) is a two-photon-excited Raman scattering process that provides several advantages over one-photon excitation [4-6]. In an HRS experiment, the excitation with light in the near infrared, convenient for biological samples, is combined with the desirable detection in the visible spectral range. Besides, the two-photon excitation is favorable for microscopic applications due to the increased penetration depth and limited probed volume [7], resulting in an improved resolution for imaging. Last but not least, TEHRS benefits even to a greater extent from the high local optical fields than normal Raman scattering does in the case of TERS, because of its nonlinear dependence on the enhanced excitation field. TEHRS, therefore, has the potential to be much more sensitive than TERS and to provide better insight into the structure and interaction of molecules on surfaces [8]. As a nonlinear incoherent Raman process, HRS is an extremely weak effect with scattering cross-sections 35 orders of magnitude smaller than cross-sections of “normal” (one-photon-excited) Raman scattering. To be observed, the effect requires very high excitation intensities provided in high-energy laser pulses [9] or by tightly focused femtosecond or picosecond mode-locked lasers [10]. In TEHRS, however, the strong field enhancement can compensate for the extremely small cross-section of HRS and allows the measurement of TEHRS spectra at excitation intensities of 106 to 107 W/cm2 [11], conditions that can be easily achieved with mode-locked picosecond lasers under focusing conditions of UFP AOP.
Preliminary analysis shows that the AOP technology is extremely attractive for rapid virus detection/identification and DNA sequencing. Rapid diagnosis of virus infection is critical for controlling viral spread in its early stage. Developing simple, fast, and economical virus detection techniques is crucial for early viral infection identification, early treatment, and increased likelihood of patient survival. The mainstream methods in virus surveillance such as fluorescent antibody assays, enzyme-linked immunosorbent assay (ELISA), and polymerase chain reaction (PCR) are based on the detection of viral antigens and/or nucleic acids of viruses. Most of these technologies suffer from complex procedures, poor sensitivity, as well as time and cost ineffectiveness. Collected samples are subjected to a series of time-consuming steps, such as ultracentrifugation and cell culture, to enrich virus particles or amplify virus titers. The low virus titer in most samples leads to sequence reads dominated by host genetic material rather than by viral pathogens. Various enrichment methods, including virus culture and genome amplification, often introduce artificial variants in the sequence reads and are impractical when samples are time sensitive. In addition, the requirement for predefined labels such as target virus-specific antibodies limits use of the conventional methods for the rapid identification of newly emerging viruses.
Viruses possess surface proteins and lipids that can generate distinctive Raman signals, and Raman spectroscopy has been identified as a suitable and effective tool to examine a single live cell for virus infection without the need for labeling and the time it takes to do so [12-19]. The obvious advantage of the Raman technique over conventional immunostaining and genetic tests for detection of human infectious viruses is that it does not require any genetic or proteomic information about the virus in advance. Tip-enhanced Raman spectroscopy (TERS) [12, 14, 20], surface-enhanced Raman spectroscopy (SERS) [13, 15, 19, 21-27], and volume-enhanced Raman spectroscopy (VERS) [18] have been applied to virus detection and identification. However, purification of biological samples and massive virus culture amplification were still needed for reliable virus detection and identification. Raman techniques capable of single-particle detection and identification of viruses, whose typical size is sub-100 nm, are in high demand. A unique submolecular resolution of the AOP technology can be used for rapid and label-free optical detection and identification of viruses directly from clinical samples without their preliminary purification or enrichment.
DNA sequencing is a bottleneck of modern genomics and bioinformatics. Therefore, alternative methods of DNA and RNA sequencing are highly desired. During the last two decades, some attempts have been made to read DNA and RNA nucleotide sequences using TERS. Unfortunately, biological molecules such as DNA have much lower Raman scattering cross sections than the resonant dyes commonly investigated in single-molecule TERS, making their detection challenging. The temptation to simply raise the excitation laser power to generate more Raman scattering leads to decomposition. If one works at sufficiently low laser power, long integration times are required, which leads to slow imaging rates and problems with drift. There have been claims of nanometer or even subnanometer spatial resolution with ambient TERS. The Deckert group attempted to reach <1 nm spatial resolution using TERS for sequencing specifically designed single-stranded DNA [28]. However, such high-resolution TERS proved extremely difficult to reproduce. At present, there is only one other report in the literature where a silver tip was scanned along a single-stranded DNA to collect TERS signals with a step of 0.5 nm, comparable to the bond length between two adjacent DNA bases [29]. A unique single-molecule sensitivity and spatial resolution of the AOP technology can be used for rapid sequencing single- and double-stranded DNA and RNA.
The innovation is accomplished by integrating a semiconductor laser source and a photodetector into a cantilevered silicon AFM probe. Because the production of individual probes is tedious and not easily reproducible, it is desirable to fabricate standardized probes in large batches with highly reproducible properties (e.g., aperture size, shape, and, hence, transmission) using established silicon microfabrication techniques of the standard AFM cantilever technology. Delivery of light to the optical probe tip is an obvious problem in such a concept due to the absence of Si-based laser sources, and, as a consequence, most developments deal with the microfabrication of aperture tips only that can then be bonded to fibers or integrated into a cantilever. Fabrication of passive cantilevered probes has been attempted by integrating a waveguide into the cantilever. Silicon microstructures are in principle compatible with semiconductor laser functionality and fabrication of light-emitting cantilevered probes can be attempted by integrating a semiconductor laser source directly into the silicon cantilever or its base. We propose a special design for the AOP where a semiconductor laser chip is integrated into a commercial silicon cantilever AFM probe, and the free propagating light from the integrated laser source is used to illuminate the probe tip and carry out AFM, NSOM, and TERS measurements.
The advantages of the present invention will become more readily apparent from the following detailed description taken with the following drawings.
The semiconductor-laser-integrated AOP concept is based on integrating a semiconductor laser source into a cantilevered silicon AFM probe. Some preferred embodiments of the invention will be described below in detail based on the drawings.
In an illustrative embodiment of the present invention (
To allow light detection capability, the silicon-integrated semiconductor laser chip can be processed into a three-section device 15 divided into an electrically isolated gain section 16 and two parallel absorber sections 17 on both sides of the gain section (
Alternatively, a second semiconductor laser chip 20 with the same epitaxial structure is bonded directly to the top surface of the base 11 of a commercial AFM probe alongside the first semiconductor laser chip 10 (
The first and second semiconductor laser chips, in their turn, can be fabricated as vertically integrated stacks (22, 23) of two or more semiconductor laser chips with different epitaxial structures corresponding to different emission wavelengths (
In another illustrative embodiment of the present invention (
To allow light detection capability, the silicon-integrated semiconductor laser chip can be processed into a three-section device 15 divided into an electrically isolated gain section 16 and two parallel absorber sections 17 on both sides of the gain section (
Alternatively, a second semiconductor laser chip 20 with the same epitaxial structure is buried in the base 11 of a commercially available silicon AFM probe in front of the cantilever 12 alongside the first semiconductor laser chip 10 (
The first and second semiconductor laser chips, in their turn, can be fabricated as vertically integrated stacks (22, 23) of two or more semiconductor laser chips with different epitaxial structures corresponding to different emission wavelengths (
Combining AFM probe with ultrafast near-field light source allows one to simultaneously achieve single-molecule spatial resolution and subpicosecond time resolution. The best way to achieve ultrafast laser pulse generation is to employ a passive mode-locking technique by dividing the laser cavity into two sections—a longer gain section and a shorter saturable absorber section. The gain section is forward biased, while the saturable absorber section is reverse biased. Electrical isolation between these two sections is achieved by using shallow dry etching to remove the heavily doped layers in the gap region.
Another illustrative embodiment of the present invention is similar to Embodiment 1 and Embodiment 2, except that the semiconductor laser chip is a two-section device 28 divided into electrically isolated gain section 29 and saturable absorber section 30 to allow ultrafast pulse generation capability (
A method embodiment of the invention provides a method of virus detection and identification using AOP. The method embodiment includes the steps of providing a semiconductor-laser-integrated atomic force microscopy optical probe comprising a semiconductor laser chip providing a gain medium section, a silicon cantilever atomic force microscopy probe, and a photodetector, all integrated into a single chip; mounting the semiconductor-laser-integrated atomic force microscopy optical probe on an atomic force microscopy system; applying a direct current bias to the semiconductor laser chip such that the laser light power delivered to the tip apex of the probe is sufficient to do tip-enhanced Raman scattering or near-field scanning optical microscopy measurements; applying reverse voltage bias to the photodetector; and performing a tip-enhanced Raman scattering measurement or near-field scanning optical microscopy measurement on a single virus particle.
A method embodiment of the invention provides a method of DNA/RNA sequencing using AOP. The method embodiment includes the steps of providing a semiconductor-laser-integrated atomic force microscopy optical probe comprising a semiconductor laser chip providing a gain medium section, a silicon cantilever atomic force microscopy probe, and a photodetector, all integrated into a single chip; mounting the semiconductor-laser-integrated atomic force microscopy optical probe on an atomic force microscopy system; applying a direct current bias to the semiconductor laser chip such that the laser light power delivered to the tip apex of the probe is sufficient to do tip-enhanced Raman scattering or near-field scanning optical microscopy measurements; applying reverse voltage bias to the photodetector; and performing a tip-enhanced Raman scattering measurement or near-field scanning optical microscopy measurement on a single-stranded DNA, double-stranded DNA, or RNA molecules, stretched and attached to a fixed surface at both ends, by way of base-to-base readout necessary for DNA/RNA sequencing.
In all embodiments, the semiconductor laser chip can be based on one of the following semiconductor materials: GaAs, InP, GaP, GaSb, and GaN.
In all embodiments, the optical gain in the silicon-integrated laser chip can be provided by bulk active region, by single or multiple quantum well active layers, or by a single or multiple layers of quantum dots in the active region of the epitaxial structure. The epitaxial structure of the laser chip can be that of quantum cascade semiconductor laser.
In all embodiments, the silicon cantilever atomic force microscopy probe used for integration with the semiconductor laser chip can alternatively be a silicon nitride cantilever atomic force microscopy probe.
This application claims benefit and priority of U.S. provisional application Ser. No. 63/183958 filed May 4, 2021, the entire disclosure of which is incorporated herein by reference.
Number | Date | Country | |
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63183958 | May 2021 | US |