Toxin genes from the bacteria Xenorhabdus nematophilus and photorhabdus luminescens

Information

  • Patent Grant
  • 6630619
  • Patent Number
    6,630,619
  • Date Filed
    Tuesday, January 18, 2000
    24 years ago
  • Date Issued
    Tuesday, October 7, 2003
    21 years ago
Abstract
The invention relates to the identification and isolation of polynucleotide molecules encoding a new class of protein insecticidal toxins which are produced by bacteria from the genera Xenorhabdus and Photorhabdus. The polynucleotide molecules may be incorporated into, for example, insect-specific viruses (including entomopox and nuclear polyhedrosis viruses), bacteria (including Gracilicutes, Firmicutes, Tenericutes and Mendosicutes), protozoa, yeast and plants for control of pest insects.
Description




FIELD OF THE INVENTION




The present invention concerns the identification and isolation of a new class of protein toxins with specificity for insects, which are produced by bacteria from the genera Xenorhabdus and Photorhabdus. In addition, the present invention relates to the incorporation of genes encoding this class of toxin into, for example, insect-specific viruses (including entomopox and nuclear polyhedrosis viruses), bacteria (including Gracilicutes, Firmicutes, Tenericutes and Mendosicutes), yeast and plants for control of insect pests.




BACKGROUND OF THE INVENTION




Insect pathogenic nematodes of the families Steinernematidae and Heterorhabditidae are known to be symbiotically associated with bacteria of the genera Xenorhabdus and Photorhabdus respectively. It has been observed that these bacteria have the ability to kill a wide range of different insects without the aid of their nematode partners. The present inventors have isolated polynucleotide molecules encoding a new class of protein insecticidal toxins from


Xenorhabdus nematophilus


strain A24 and


Photorhabdus luminescens


strain V16/1.




DISCLOSURE OF THE INVENTION




In a first aspect, the present invention provides an isolated polynucleotide molecule encoding an insecticidal toxin, said polynucleotide molecule comprising a nucleotide sequence which substantially corresponds to the nucleotide sequence shown as SEQ ID NO: 1 or SEQ ID NO: 2.




In a second aspect, the present invention provides an isolated polynucleotide molecule encoding an insecticidal toxin, said polynucleotide molecule comprising a nucleotide sequence having at least 85%, more preferably at least 95%, sequence identity to the nucleotide sequence shown as SEQ ID NO: 2.




In a third aspect, the present invention provides an insecticidal toxin, in a substantially pure form, which toxin comprises an amino acid sequence having at least 95% sequence identity to that shown as SEQ ID NO: 3.




In a fourth aspect, the present invention provides an insecticidal toxin, in a substantially pure form, which toxin comprises an amino acid sequence having at least 85%, more preferably at least 95%, sequence identity to that shown as SEQ ID NO: 4.




Most preferably, the insecticidal toxin of the third or fourth aspect comprises an amino acid sequence substantially corresponding to that shown as SEQ ID NO: 3 or SEQ ID NO: 4 respectively.




In a fifth aspect the present invention provides a recombinant microorganism, the recombinant microorganism being characterised in that it is transformed with and expresses the polynucleotide molecule of the first or second aspects of the present invention.




The microorganisms which may be usefully transformed with the polynucleotide molecule of the first or second aspects of the present invention include bacteria, such as Escherichia, Gracilicutes, Firmicutes, Tenericutes and Mendosicutes; protozoa and yeast. The microorganism can be transformed by routine methods using expression vectors comprising the toxin-encoding polynucleotide molecule operably linked to a suitable inducible or constitutive promoter sequence.




In a sixth aspect, the present invention provides a method of producing an insecticidal toxin, said method comprising:




(i) culturing a microorganism according to the fourth aspect under conditions suitable for the expression of the toxin-encoding polynucleotide molecule, and




(ii) optionally recovering the expressed insecticidal toxin.




In a seventh aspect, the present invention provides a recombinant insect-specific virus, the recombinant insect-specific virus being characterised in that it includes within a non-essential region of its genome the polynucleotide molecule of the first or second aspects of the present invention operably linked to a suitable inducible or constitutive promoter sequence.




The recombinant insect-specific virus of the seventh aspect is preferably selected from entomopox and nuclear polyhedrosis viruses. The recombinant virus can be produced by routine methods such as homologous recombination.




In an eighth aspect, the present invention provides a method for killing pest insects, said method comprising applying to an area infested with said insects an effective amount of a recombinant microorganism according to the fourth aspect and/or a recombinant virus according to the seventh aspect, optionally in admixture with an acceptable agricultural carrier.




In a ninth aspect, the present invention provides a plant transformed with, and capable of expressing, the polynucleotide molecule of the first or second aspects of the present invention.




The plant according to the ninth aspect may be any plant of agricultural, arboricultural, horticultural or ornamental value that is susceptible to damage by feeding pest insects. However, preferably, the plant is selected from plants of agricultural value such as cereals (e.g.; wheat and barley), vegetable plants (e.g.; tomato and potato) and fruit trees (e.g., citrus trees and apples). Other preferred plants include tobacco and cotton.




The plant can be transformed by routine methods including Agrobacterium transformation and electroporation. Preferably, the toxin-encoding polynucleotide molecule is operably linked to a suitable inducible or constitutive promoter sequence. Particularly preferred promoter sequences include the cauliflower mosaic virus (CaMV 35 S) promoter element and promoter elements from the sub-clover stunt virus (SCSV).




The term “substantially corresponds” as used herein in relation to the nucleotide sequence is intended to encompass minor variations in the nucleotide sequence which due to degeneracy do not result in a change in the encoded protein. Further this term is intended to encompass other minor variations in the sequence which may be required to enhance expression in a particular system but in which the variations do not result in a decrease in biological activity of the encoded protein.




The term “substantially corresponding” as used herein in relation to the amino acid sequence is intended to encompass minor variations in the amino acid sequence which do not result in a decrease in biological activity of the insecticidal toxin. These variations may include conservative amino acid substitutions. The substitutions envisaged are:




G, A, V, I, L, M; D, E; N, Q; S, T; K, R, H; F, Y, W, H; and P. Nα-alkalamino acids.




The term “comprise”, “comprises” and “comprising” as used throughout the specification are intended to refer to the inclusion of a stated step, component or feature or group of steps, components or features with or without the inclusion of a further step, component or feature or group of steps, components or features.




The invention will hereinafter be further described by way of reference to the following, non-limiting example and accompanying figures.











BRIEF DESCRIPTION OF THE ACCOMPANYING FIGURES




FIG.


1


: Nucleotide sequence of the protein coding (sense) strand of the


X. nematophilus


DNA insert of clone toxb4 (SEQ ID NO: 5). The translation initiation codon (ATG) at nucleotide position 17-19 and the translation termination codon (TAA) at nucleotide position 1121-1123 are indicated by shaded boxes. Locations of oligonucleotide sequences used for sequencing primer design are indicated by arrow and a primer name (TOX F2 (SEQ ID NO: 7), TOX F1 (SEQ ID NO:8), TOX R3 (SEQ ID NO:9), TOX F3 (SEQ ID NO:10), TOX R4 (SEQ ID NO:11), A24AC1 (SEQ ID NO:12)). Arrows directed left-to-right, positioned above the sequence indicate sense-strand primers, arrows directed right-to-left, positioned below the sequence indicate anti-sense primers.




FIG.


2


: Deduced sequence of the 368 amino acid toxb4 protein from


X. nematophilus


strain A24, derived by conceptual translation of the long open reading frame commencing at nucleotide position 17 and ending at nucleotide position 1120 of the toxb4 gene sequence (

FIG. 1

) (SEQ ID NO:3).




FIG.


3


: Restriction map of


P. luminescens


V16/1 toxin gene clone showing location of putative toxin protein coding region (solid black box) and direction of transcription (arrow). RI=EcoRI, RV=EcoRV, H=Hind III, S=Sma I. Toxin production from clones containing selected restriction fragments is indicated above the restriction map (+, toxin activity; −, no toxin activity).




FIG.


4


: Nucleotide sequence of the protein coding (sense) strand of the


P. luminescens


Hind III/Sma I DNA fragment (SEQ ID NO:6). Translation initiation (ATG) and termination (TGA) codons are indicated by shaded boxes. Locations of oligonucleotide sequences used for sequencing primer design are indicated by arrows and a primer name as described in the brief description of

FIG. 1

(AC4R (SEQ ID NO:13), AC2F (SEQ ID NO:14), AC7R (SEQ ID NO:15), AC6F (SEQ ID NO:16), AC5R (SEQ ID NO:17), AC3F (SEQ ID NO:18), AC8R (SEQ ID NO:19), and V16AC1 (SEQ ID NO:20)). Restriction enzyme sites used for sub-cloning and identification of sequences necessary for toxin activity are underlined and labelled on the figure.




FIG.


5


: Deduced sequence of the 335 amino acid PlV16tox1 protein from


P. luminescens


strain V16/1, derived by conceptual translation of the long open reading frame commencing at nucleotide position 172 and ending at nucleotide position 1179 of the Hind III/Sma I restriction enzyme fragment (

FIG. 4

) (SEQ ID NO:4).




FIGS.


6


A and


6


B: Alignment of the nucleotide sequences encompassing the protein open reading frames of the


X. nematophilus


strain A24toxb4 gene (SEQ ID NO:1) and the


P. luminescens


strain V16/1 PlV16tox1 gene (SEQ ID NO:2) using the Gap program of the GCG computer software package. The


X. nematophilus


sequence is the upper line and the


P. luminescens


sequence is the lower line.




FIG.


7


: Alignment of the deduced protein sequences of the extended open reading frames encoding the


X. nematophilus


A24 toxb4 protein (SEQ ID NO:3) and the


P. luminescens


strain V16/1 PlV16tox1 protein (SEQ ID NO:4) using the Gap program of the GCG computer software package. The


X. nematophilus


sequence is the upper line and the


P. luminescens


sequence is the lower line.




FIG.


8


: Provides a scheme for expressing and isolating


X. nematophilus


A24toxb4 protein and


P. luminescens


V16/7 PlV16tox1 protein using the IMPACT™ system. The toxin protein is represented schematically as a solid black bar with the first (Met) and last (Ile) amino acids indicated.











EXAMPLE 1




Isolation and Characterisation of Toxin Genes from


Xenorhabdus nematophilus


A24 and


Photorhabdus Luminescens






Construction of Recombinant Bacterial DNA Libraries




High molecular weight genomic DNA was isolated from


Xenorhabdus ematophilus


strain A24 using the method of Marmur (1961) and from


Photorhabdus luminescens


strain V16/1 by the method of Scott et al. (1981). The genomic DNA was partially digested with the restriction enzyme Sau 3AI to generate fragments of DNA in the size range 30 to 50 kilobase pairs and dephosphorylated by incubation with the enzyme calf intestinal alkaline phosphatase. The cosmid cloning vector “Supercos” (Stratagene) was linearised by digestion with the restriction enzyme Bam HI and ligated to the partially digested bacterial DNA at a vector:genomic DNA ratio of 1:3 according to standard procedures (Maniatis et al., 1982). The ligated DNA was packaged in vitro using Gigapack II XL Packaging Extract according to manufacturer's instructions (Stratagene). The packaged DNA was transfected into the


Escherichia coli


strain NM554 (F





, recA, araD139, Δ(ara, leu) 7696, Δlac Y74, galU−, galK−, hsr, hsm+, strA, mcrA[−], mcrA[−]). Transfected bacteria were plated onto Luria Bertani (LB) agar medium containing 150 μg ml


−1


ampicillin, to select for bacteria containing recombinant cosmid clones.




Isolation of an Insect Toxin Gene from


Xenorhabdus Nematophilus


Strain A24 by Functional Screening




Cultures of bacteria harbouring individual cosmid clones were grown overnight at 28° C. in LB broth containing 150 μg ml


−1


ampicillin. The bacterial cultures were treated for 15 minutes with 2 mg ml


−1


lysozyme to create cell-free lysates. Five microliter aliquots of these lysates were injected into the haemocoel of three


Galleria mellonella


fourth instar larvae. Two clones with insecticidal activity were identified. Control lysates prepared by lysozyme treatment of


E. coli


NM554 cells containing non-recombinant Supercos vector possessed no toxin activity in the Galleria bioassay.




Characterisation of Toxin Producing Clones




Cosmid DNA from toxin-expressing clones was isolated using a standard alkaline lysis procedure (Maniatis et al., 1982). Isolated DNA was analysed by restriction enzyme digestion and agarose gel electrophoresis (Maniatis et al., 1982). Both cosmid clones appeared to contain the same region of approximately 34.6 kb of


X. nematophilus


genomic DNA. One clone, designated cos149 was chosen for further analysis.




A 7.4 kb Bam HI fragment from cos149 was ligated into the plasmid vector pGEM7Z(f)+ (Promega Biotec) and transformed into the


E. coli


strain DH5a (F





, F8odlac ZΔ M15, recA1, endA1, gyrA96, thi-1, hsdR17[r


K−


m


K+


] supE44, reLA1, deoR, Δ[lacZYA-argF] U169) using electroporation at 25 mF, 200 and 2.5 kV in a 0.2 cm cuvette in a Bio-Rad Gene Pulser. The resultant sub-clone was designated N8pGEM. Lysates prepared from


E. coli


cells containing the N8p GEM clone contained toxin as determined by the Galleria haemolymph injection bioassay.




A set of unidirectional deletion clones was prepared from N8pGEM according to the method of Henikoff (1984) using the Erase-a-base kit (Promega Biotec) and digestion with the enzymes Cla I and Sph I. Deleted DNA was recircularised by ligation with T4 DNA ligase and transformed into


E. coli


strain DH5α by electroporation as described above. Deletion sub-clones of varying sizes were identified and tested for toxin production using the Galleria bioassay. The smallest clone that retained toxin expression (designated tox 1) contained 1.5 kb of


X. nematophilus


DNA.




Plasmid DNA from the tox 1 clone was isolated, digested with the restriction enzymes Sac I and Hind III and directionally deleted with the Erase-a-base kit. A set of deleted clones was identified and tested for toxin production. The smallest clone retaining toxin activity (designated toxb4) contained 1.2 kb of


X. nematophilus


DNA. The toxb4 clone was sequenced on both strands with a combination of vector and gene-specific sequencing primers and ABI Prism™ di-deoxy dye-terminator sequencing mix (Applied Biosystems). Plasmid DNA was prepared by a standard alkaline lysis procedure (Maniatis et al., 1982), the double-stranded DNA was sequenced by a thermal cycle sequencing protocol, and sequencing reactions were analysed on an automated DNA sequencer (Applied Biosystems Model 377) according to manufacturer's instructions.




The toxb4 clone contained an insert 1205 bp in length (

FIG. 1

) which encoded a protein open reading frame of 368 amino acid residues (FIG.


2


). Searches of the non-redundant Genbank nucleotide and protein databases were done for the toxb4 nucleotide and deduced protein sequences using the blastn, fasta and blastp, programs for DNA and protein sequences. No statistically significant similarity was detected between the


X. nematophilus


sequences and sequences present in the databases.




Isolation of a toxb4 Homologue from


Photorhabdus Luminescens


Strain V16/1




The genomic DNA cosmid library prepared from


P. luminescens


strain V16/1 was screened by nucleic acid hybridisation using the toxb4 gene as a hybridisation probe. Two hundred clones were grown overnight at 37° C. on LB agar plates containing 150 μg ml


−1


ampicillin and the resultant bacterial clones were transferred to nylon membrane discs (Colony/Plaque Screen™, NEN DuPont) according to the manufacturer's protocol. Colonies were lysed in situ on the membranes by treatment with 0.5 N NaOH and neutralised with 1.0M Tris-Cl, pH 7.5, and the cosmid DNA was immobilised on the membranes by air drying. Filters were pre-hybridised in a solution consisting of 5×SSPE, 0.2% w/v skim-milk powder, 0.5% w/v SDS and 0.2% mg/ml denatured salmon sperm DNA at 68° C. for 3 hours. A hybridisation probe was prepared by radiolabelling approximately 100 ng of isolated toxb4 DNA with 50 μCi α-


32


P-dATP by random-primed synthesis using the Gigaprime DNA labelling kit (GPK-1, Bresatec). Filters were incubated with the toxb4 probe in 5×SSPE, 0.2% w/v skim-milk powder, 0.5% w/v SDS and 0.2% mg/ml denatured salmon sperm DNA at 68° C. overnight. Filters were rinsed briefly in 2×SSC, and washed once for 15 min at room temperature in 2×SSC, 0.1% w/v SDS, once at 68° C. for 30 min in 0.5×SSC, 0.2% SDS. After a final rinse in 0.5×SSC filters were autoradiographed for 24 hours at −80° C. Three clones that hybridised with the toxb4 probe were identified. Cultures were grown for each clone and cell lysates were assayed for toxicity using the Galleria bioassay. Two clones, designated cos154 and cos160 showed toxin expression. Cosmid DNA was isolated from cos154 and cos160 and analysed by restriction enzyme digestion and Southern blot hybridisation. An 8.5 kb Not I restriction enzyme fragment that hybridised to the toxb4 probe was isolated from clone cos160 and sub-cloned into the Not I site of the plasmid vector pBC (KS)+ (Stratagene). Further restriction enzyme mapping and bioassay resulted in identification of a 2.4 kb Eco RI fragment that contained all the sequences necessary for production of active toxin.




Characterisation of the


P. Luminescens


Strain V16/1 Toxin Gene




Three additional sub-clones of the 2.4 kb Eco RI fragment were constructed and tested for toxin production (FIG.


3


). A 1.65 kb Hind III/Eco RI fragment, a 1.39 kb Hind III/Sma I fragment and a 1.44 kb Eco RV/Eco RI fragment were each ligated into the plasmid vector pBluescript II (KS)+ (Stratagene) and the ligated DNA was transformed into


E. coli


strain DH10B™ (Stratagene) (F− mcrA Δ(mrr-hsdRMS-mcrBC) F8odlacZΔM15 ΔlacX74 deoR recA1 araD139 Δ(ara, leu)7697 galU galKl





rpsL nupG). Cell lysates were prepared from cultures containing each of these sub-clones and bioassayed by haemocoel injection into Galleria larvae. Cultures containing the 1.65 kb Hind III/Eco RI fragment and the 1.39 kb Hind III/Sma I fragment expressed active toxin but cultures containing the 1.44 kb Eco RV/Eco RI fragment were inactive in the bioassay (FIG.


3


). Thus, sequences located 5′ to the Eco RV site of the


P. luminescens


V16/1 Hind III/Eco RI fragment are required for toxin expression from the plasmid pBluescript II (KS)+, whereas sequences 3′ to the Sma I site are dispensable. The toxin gene is designated PlV16tox1 and the toxin protein encoded by this gene is designated PlV16tox1. A strategy was developed for sequencing the 1.39 kb Hind III/Sma I


P. luminescens


DNA fragment based on internal restriction enzyme sites and custom-synthesised oligonucleotide sequencing primers. The complete sequence of the 1.39 kb Hind III/Sma I fragment was determined on both strands (FIG.


4


). Analysis of this DNA sequence identified a single long open reading frame 335 amino acid residues in length (FIG.


5


).




Comparison of the Toxin Gene and Protein Sequences from


X. Nematophilus


and


P. Luminescens






The DNA sequences corresponding to the deduced toxin protein open reading frames were compared for the two bacterial species using the ‘Gap’ program of the GCG software package. The two gene sequences are 83% identical in the coding region (

FIG. 6

) but show no significant similarity in the sequences immediately 5′ and 3′ of the extended open reading frame. The toxin protein sequences were likewise compared with the ‘Gap’ program and found to be 75% identical to each other and 86% similar if physico-chemically conservative amino acid differences were taken into consideration (FIG.


7


). The existence of two extended insertion/deletion variants between the two proteins identifies amino acids that are not essential for toxic activity against


Galleria melonella.






EXAMPLE 2




Distribution of the Toxin Gene from


X. Nematophilus


A24




Genomic DNA was prepared from the type strain for each of four identified Xenorhabdus species, an additional unclassified Xenorhabdus species and six


Photorhabdus luminescens


strains selected to include at least one member of each of the major genetic groups identified by analysis of 16S ribosomal RNA genes (Brunel et al., 1997). The DNA was digested with restriction enzymes, fractionated by agarose gel electrophoresis and transferred to nylon membranes by the Southern blot method (Maniatis et al., 1982). The filters were hybridised with a probe prepared from the


X. nematophilus


A24 toxb4 gene. Hybridisation conditions were selected that would allow sequences with an average identity of approximately 65% to be detected. The results are shown in Table 1.
















TABLE 1











Bacterial species




Strain




Toxin gene†















Xenorhabdus nematophilus






A24




+









Xenorhabdus nematophilus






AN6




+









Xenorhabdus poinarii






G6














Xenorhabdus beddingii






Q58














Xenorhabdus bovienii






T28












Xenorhabdus sp.




K77














Photorhabdus luminescens






Hb














Photorhabdus luminescens






Hm














Photorhabdus luminescens






C1














Photorhabdus luminescens






V16




+









Photorhabdus luminescens






C840




+








6









Photorhabdus luminescens






K81




+













†+ indicates presence of hybridising DNA, − indicates absence of hybridisation of toxin gene probe.













Clearly, homologues of the toxin gene from


X. nematophilus


A24 is present in some species of the genus Xenorhabdus, and some, but not all isolates of


Photorhabdus luminescens.






EXAMPLE 3




Activity of Toxin Genes Cloned into Plasmid Vectors and Transformed into


E. Coli






Active toxin protein was expressed when the A24 toxb4 clone or V16 tox1 genes were inserted into general plasmid vectors of the type pGEM (Promega Biotec) or pBluescript (Stratagene) and the recombinant plasmids transformed into


E. coli


. More specifically, the


X. nematophilus


toxin A24 toxb4gene was cloned into the plasmid pGEM7z and the


P. luminescens


V16 tox1 gene was cloned into pBluescript SK.




Preparation of Cell Extract




A culture of


E. coli


cells transformed with either a recombinant plasmid containing a toxin gene or a non-recombinant parent plasmid was grown overnight at 37° C. in nutrient broth. Lysozyme was added to the culture to a final concentration of 1 mg/ml and the mixture left at room temperature for 30 minutes to lyse the cells. The cleared lysate was used directly for bioassay.




Bioassay




Extracts were bioassayed using the intrahaemocoel injection assay. Ten microliters of


E. coli


cell lysate were injected into the abdominal region of a


Galleria mellonella


larvae through an intersegmental membrane. Bioassays were done on 10 larvae for each extract and injected larvae were held at 22° C. Mortality was recorded daily. Results are shown in Table 2.














TABLE 2













Percentage mortality
















Toxin source




Day 1




Day 2




Day 3




Day 4




Day 5



















PlV16tox1




0




20




40




90




100






pBluescript SK (control)




0




10




10




10




20






A24toxb4




10




10




10




100




100






PGEM7z (control)




0




0




10




20




20














Extracts prepared from


E. coli


cells transformed with recombinant plasmids containing the toxin gene from either


X. nematophilus


A24 or


P luminescens


strain V16/1 kill


G. mellonella


larvae and caused complete mortality of injected individuals five days after injection. Extracts prepared from cells containing only the plasmid vectors pBluescript SK or pGEM7z did not kill the larvae.




Effect of Temperature on Toxicity




Extracts were prepared from


E. coli


cells transformed either with cloned toxin genes or the empty plasmid vector controls and injected into


G. mellonella


larvae as described previously. The injected larvae were maintained at either 20° C. or 25° C. Results are shown in Table 3.














TABLE 3













Percentage mortality




















Day




Day




Day




Day




Day




Day






Toxin source




Temp




1




2




3




4




5




6









PlV16tox1




20° C.




0




10




25




60




90




100






PlV16tox1




25° C.




0




0




100




100




100




100






pBluescript SK




20° C.




0




0




0




0




0




0






pBluescript SK




25° C.




0




5




10




10




15




15






A24toxb4




20° C.




5




30




35




65




95




100






A24toxb4




25° C.




60




75




100




100




100




100






pGEM7z




20° C.




0




5




5




5




5




5






pGEM7z




25° C.




0




5




5




5




5




5














Extracts prepared from cells containing either the cloned toxin gene from


X. nematophilus


A24 or the


P. luminescens


V16 toxin gene killed all larvae within three days for larvae held at 25° C. or by six days for larvae maintained at 20° C. following injection. Control extracts prepared from cells containing only the cloning vectors pBluescript or pGEM7z did not cause significant larval mortality.




EXAMPLE 4




Toxin Activity Against Different Insect Species




(1)


Helicoverpa Armigera


(Lepidoptera:Noctuidae) Bioassay




Extracts were bioassayed using the intrahaemocoel injection assay. Ten microliters of


E. coli


cell lysate were injected into the abdominal region of fourth instar


Helicoverpa armigera


larvae through an intersegmental membrane. Bioassays were done on 24 larvae for each extract and injected animals were held at 27° C. Mortality was recorded daily. Results are shown in Table 4.















TABLE 4













Percentage mortality


















Toxin source




Day 1




Day 2




Day 3




Day 4





















PlV16tox1




38




71




87




91







pBluescript SK




4




4




8




8







A24toxb4




50




87




91




91







pGEM7z




0




0




0




0















Extracts prepared from


E. coli


cells transformed with recombinant plasmids containing the toxin gene from either


X. nematophilus


A24 or


P luminescens


strain V16/1 caused significant mortality to injected larvae within 24 hours after injection. All larvae died by 4 days following the injection, with the exception of a small number of “escapees” that resulted from leakage of injected material upon removal of the injection needle. Extracts prepared from cells containing only the plasmid vectors pBluescript SK or pGEM7z had no significant effect on


H. armigera


larvae.




(2)


Plodia interpunctella


(Lepidoptera:) Bioassay




Extracts were bioassayed using the intrahaemocoel injection assay. Five microliters of


E. coli


cell lysate were injected into the abdominal region of a final instar


Plodia interpunctella


larva through an intersegmental membrane. Bioassays were done on 20 wandering-stage larvae for each extract and injected animals were held at 26° C. Mortality was recorded daily. Results are shown in Table 5.














TABLE 5













Percentage mortality
















Toxin source




Day 1




Day 2




Day 3




















PlV16tox1




20




90




100







pBluescript SK




0




0




0







A24toxb4




75




95




100







pGEM7z




0




5




5















Extracts prepared from


E. coli


cells transformed with recombinant plasmids containing the toxin gene from either


X. nematophilus


A24 or


P luminescens


strain V16/1 caused significant mortality to injected larvae within 24 hours after injection. All larvae had died within 3 days. Extracts prepared from cells containing only the plasmid vectors pBluescript SK or pGEM7z had no significant effect on survival of


P. interpunctella


larvae.




(3)


Lucilia cuprina


(Dip tera: Calliphoridae) Adults Bioassay




Extracts were bioassayed using the intrahaemocoel injection assay. Five microliters of


E. coli


cell lysate were injected into the abdomen of a 3 day old


Lucilia cuprina


female fly through an intersegmental membrane. Bioassays were done on 20 flies for each extract and injected animals were held at 25° C. Mortality was recorded daily. Results are shown in Table 6.















TABLE 6













Percentage mortality


















Toxin source




Day 1




Day 2




Day 3




Day 4





















PlV16tox1




55




65




85




100







pBluescript SK




20




25




25




25







A24toxb4




55




75




85




100







pGEM7z




30




60




65




65















Extracts prepared from


E. coli


cells transformed with recombinant plasmids containing the toxin gene from either


X. nematophilus


A24 or


P luminescens


strain V16/1 caused significant mortality to injected flies within 24 hours of injection. All flies died by 4 days after injection. Extracts prepared from cells containing only the plasmid vectors pBluescript SK or pGEM7z also caused significant mortality to the


L. cuprina


flies in the first 48 hours following injection. After this control mortality stabilised, there was no further deaths for the remainder of the test period. Additional experiments with saline injections showed that the early mortality in the control group resulted from physical damage to the flies as a result of the injection process.




(4)


Lucilia cuprina


(Diptera:Calliphoridae) Larvae Bioassay




Extracts were bioassayed using the intrahaemocoel injection assay. Five microliters of


E. coli


cell lysate were injected into the abdominal cavity of wandering-stage final instar Lucilia cuprina larvae through an intersegmental membrane. Bioassays were done on 20 larvae for each extract and injected animals were held at 25° C. Mortality was recorded daily. Results are shown in Table 7.















TABLE 7













Percentage mortality


















Toxin source




Day 1




Day 2




Day 3




Day 4











PlV16tox1




35




45




75




80







pBluescript SK




25




30




30




30







A24toxb4




10




35




90




95







pGEM7z




15




20




20




25















Extracts prepared from


E. coli


cells transformed with recombinant plasmids containing the toxin gene from either


X. nematophilus


A24 or


P. luminescens


strain V16/1 caused significant mortality to injected larvae within 48 hours of injection. All larvae died by 4 days after injection, with the exception of a small number of “escapees” resulting from leakage at the time of needle withdrawal as previously described for


H. armigera


. As with the


L. cuprina


adults, extracts prepared from cells containing only the plasmid vectors pBluescript SK or pGEM7z caused significant mortality to the


L. cuprina


larvae in the first 48 hours following injection. After this, control mortality stabilised and there were no further deaths in this group of larvae for the remainder of the test period. As described above, experiments with saline injections showed that this early mortality in the control group resulted from physical damage to the larvae as a result of the injection process.




(5)


Aphis Gossypii


(Hemiptera:Aphididae) Nymphs Bioassay




Extracts were prepared from


E. coli


cells containing either the


X. nematophilus


toxin gene or the empty plasmid vector pGEM7z. The extracts were incorporated into a defined liquid diet at a concentration of 10% by volume and aphids were provided ad libitum access to diet for a period of five days. Results are shown in Table 8.
















TABLE 8












%




Average








Mortality




Number of







Treatment




at day 5




Moults




























Control†




10




1.9







pGEM7z extract




0




2







A24toxb4 extract




90




0.6













†an additional treatment consisting of diet supplemented with lysozyme at the same final concentration used to prepare the


E. coli


cell extracts was included as a control for any potential effects of the lysozyme.













The


X. nematophilus


A24 toxin effectively blocked growth as seen from the reduction in the number of nymphal moults, and by five days had killed most of the larvae. Thus, the


X. nematophilus


A24 toxin was orally insecticidal to


Aphis gossypii.






EXAMPLE 5




Expression and Purification of the Full-length Toxin Protein from


X. Nematophilus






Further characterisation of the properties of the toxins encoded by the cloned genes from


X. nematophilus


A24 and


P. luminescens


V16/1 required expression of the full-length protein in a format that allowed for affinity purification of the toxin. This was achieved by expressing the full-length toxin as a fusion protein in which the fusion partner was used for affinity selection, and the toxin domain was cleaved off chemically after the purification stage. A suitable expression and purification system is the IMPACT™ system (New England Biolabs) in which the toxin open reading frame is cloned at the 5′ end of a self-splicing intein coding sequence fused to a short DNA sequence encoding a chitin binding domain.




Recombinant plasmids containing both the


X. nematophilus


A24 toxin and the


P. luminescens


V16/1 toxin genes were prepared in the IMPACT™ vector pCYB3 (FIG.


8


). Preparation of these constructs required the engineering of a unique restriction enzyme site at each end of the toxin open reading frame that enabled in-frame insertion of the toxin gene into the expression vector such that translation began at the Methionine initiation codon of the toxin protein and a cleavage site for protein splicing was placed immediately adjacent to the final residue of the toxin open reading frame. Expression of the fusion proteins in


E. coli


, preparation of bacterial cell extracts, affinity isolation of the fusion proteins on chitin cellulose columns, on-column DTT-mediated cleavage of the fusion proteins and elution of the purified toxin proteins were all performed according to the manufacturer's instructions (IMPACT™ system manual, New England Biolabs)




For both toxin constructs a major protein product of the expected size (approximately 40 kDa) was detected by SDS polyacrylamide gel electrophoretic analysis of the column eluate. The preparations contained several other proteins but these comprised less than 10% of the total protein present in the samples as determined by Coomassie blue staining of the polyacrylamide gels. Approximately 750 μg of PlV16tox1 toxin and 1.5 mg of A24toxb4 toxin were isolated from one liter of


E. coli


broth cultures. Purified proteins were dialysed against phosphate-buffered saline and simultaneously concentrated by diafiltration to a final concentration of approximately 1 mg/ml on Millipore spin cartridges with a membrane nominal molecular weight cut-off of 10 kDa according to manufacturer's instructions (Millipore).




EXAMPLE 6




Biological Activity of Purified Toxin Proteins




Bioassay




The activity of the purified


X. nematophilus


and


P. luminescens


toxins were determined by intra-haemocoel injection bioassay on


Galleria mellonella


and


Helicoverpa armigera


larvae as described above. The toxin protein preparations were diluted in phosphate-buffered saline and 10 ml of protein solution was injected into each larva. Ten larvae were injected for each protein concentration and mortality was recorded at 12 hour intervals for six days after injection. Proteins were tested over a dose range from 1 nanogram (10


−9


g) to 1 microgram (10


−6


g) of protein per larva. An inert protein,


E. coli


maltose binding protein, was prepared in the IMPACT™ system, purified and concentrated according to the same methods used for the two toxin proteins. The purified maltose binding protein was used as a control for these experiments. The maltose binding protein did not cause larval mortality at any of the quantities tested. The results are shown in Tables 9 to 12.












TABLE 9











Effect of purified PlV16 tox1 toxin on


G. mellonella


larvae













Percentage Mortality





















Day




Day




Day




Day




Day




Day




Day




Day




Day






Protein




2




2




3




3




4




4




5




5




6






Injected




am




pm




am




pm




am




pm




am




pm




am









1 ng




0




0




0




0




0




0




0




0




0






10 ng




0




0




0




0




0




0




0




0




10






20 ng




0




10




10




20




20




20




20




30




30






100 ng




0




0




30




40




60




70




80




80




100






200 ng




0




0




44




56




56




78




100




100




100






1000 ng




20




20




60




60




100




100




100




100




100






















TABLE 10











Effect of purified A24 toxb4 toxin on


G. mellonella


larvae













Percentage Mortality





















Day




Day




Day




Day




Day




Day




Day




Day




Day






Protein




2




2




3




3




4




4




5




5




6






Injected




am




pm




am




pm




am




pm




am




pm




am









1 ng




0




0




0




0




0




0




0




0




0






10 ng




0




0




0




0




0




0




0




0




0






20 ng




0




0




10




20




20




40




60




70




80






100 ng




10




10




20




30




30




50




90




100




100






200 ng




0




0




0




0




50




70




70




90




100






1000 ng




0




0




0




10




60




80




100




100




100






















TABLE 11











Effect of purified PlV16 tox1 toxin on


H. armigera


larvae













Percentage Mortality




















Day




Day




Day




Day




Day




Day




Day




Day






Protein




1/




1/




2/




2/




3/




3/




4/




4/






Injected




am




pm




am




pm




am




pm




am




pm









1 ng




0




0




0




0




0




0




0




0






10 ng




0




0




0




0




0




0




0




0






20 ng




0




10




10




10




10




10




10




10






100 ng




30




30




50




50




60




70




70




70






200 ng




0




0




80




80




80




80




80




80






1000 ng




22




67




100




100




100




100




100




100






















TABLE 12











Effect of purified A24 toxb4 toxin on


H. armigera


larvae













Percentage Mortality




















Day




Day




Day




Day




Day




Day




Day




Day






Protein




1/




1/




2/




2/




3/




3/




4/




4/






Injected




am




pm




am




pm




am




pm




am




pm









1 ng




0




0




0




0




0




0




0




0






10 ng




0




30




50




70




90




90




90




90






20 ng




0




30




50




80




90




90




90




90






100 ng




0




20




80




100




100




100




100




100






200 ng




0




30




90




100




100




100




100




100






1000 ng




20




60




100




100




100




100




100




100














Both the


X. nematophilus


A24 toxin and the


P. luminescens


V16/1 toxin killed a high percentage of larvae after a single injection of at least 20 ng of toxin protein per larva. Mortality was dependent on toxin type and concentration.






H. armigera


was sensitive to small quantities of


X. nematophilus


A24 toxin with high mortality at 10-20 ng of toxin per larva, but was less sensitive to


P. luminescens


V16/1 toxin where significant mortality was observed only for quantities greater than 20 ng of protein per larva. A similar pattern of sensitivity was observed for


G. mellonella


larvae. The time taken to kill the larvae of either species was not strongly dependent on the time since toxin injection, although larger amounts of toxin killed more quickly. However, at all quantities greater than, or equal to 20 ng per larva the insects were effectively dead, because the


H. armigera


larvae ceased feeding and


G. mellonella


larvae were unable to spin cocoon silk.




Thus, the proteins encoded by the A24 toxb4 genes of


X. nematophilus


and the PlV16 tox1 gene of


P. luminescens


encode toxin proteins that are effective insecticides, especially of lepidopterous larvae including


G. mellonella, H. armigera


and


P. interpunctella


, when delivered into insect haemocoel.




EXAMPLE 7




Effect of Purified Toxin on Insect Cells in Culture




The purified


X nematophilus


A24 toxin and


P. luminescens


V16/1 toxin and the maltose binding protein control were each tested for their effects on the growth and viability of insect cells in tissue culture. A sample of 10


4


cells in the appropriate culture medium was mixed with the test proteins at several different concentrations and seeded into the wells of A 96-well tissue culture plate. Cells were allowed to grow for 24 hours at 25° C. and cells were counted in a haemocytometer and assessed visually for cell lysis. The results are shown in Table 13.




For all cell lines, at all protein concentrations tested the maltose binding protein control had no effect on cell growth or viability. Neither of the toxin proteins had any significant effect on cell growth or viability for the


Drosophila melanogaster


Schneider 2 cell line. The


X. nematophilus


A24 toxin caused significant cell growth inhibition and cytotoxicity to the lepidopteran High-Five cell line at concentrations above 0.1 g/ml. The


P. luminescens


V16 toxin caused slight growth inhibition only at the highest concentration tested of 1 μg/ml. The


X. nematophilus


A24 toxin caused significant cell growth inhibition and cytotoxicity to the lepidopteran Sf9 cell line at concentrations above 0.001 μg/ml, and the


P. luminescens


V16 toxin was toxic to this cell line at concentrations of 0.1 μg/ml and higher. Thus, toxins of this family exhibit growth inhibitory and cytotoxic activity against insect cells in tissue culture, especially cell lines of lepidopteran origin. Similar tests with a mouse hybridoma cell line demonstrated slight growth inhibition only by the


X. nematophilus


A24 toxin, and only at the highest concentration tested of 1 μg/ml.














TABLE 13













Treatment
















Cell Line




Toxin




Concentration μg/ml




Cells/well




















Schneider 2




PlV16tox1




0




4.1 × 10


4















0.001




ND


















0.1




4.1 × 10


4















1




4.6 × 10


4









Schneider 2




A24toxb4




0




3.7 × 10


4















0.001




ND 













0.1




3.6 × 10


4















1




3.4 × 10


4









High-Fives




PlV16tox1




0




3.8 × 10


4















0.001




ND 













0.1




3.9 × 10


4















1




2.9 × 10


4









High-Fives




A24toxb4




0




8.2 × 10


4















0.001




7.1 × 10


4















0.1




2.5 × 10


4















1




2.5 × 10


4









Sf9




PlV16tox1




0




3.6 × 10


4















0.001




4.3 × 10


4















0.1




  7 × 10


3















1




  6 × 10


3









Sf9




A24toxb4




0




4.7 × 10


4















0.001




  1 × 10


4















0.1




  5 × 10


3















1




6.5 × 10


3















†ND: cell numbers not determined













As will be appreciated by persons skilled in this field, the present invention provides a new class of toxins useful for genetically engineering a wide range of biological systems which will thus become more useful for control of pest insects detrimental to agricultural, aquatic and forest industries. This new class of toxin may be purified by one or more methods of protein purification well known in the art. Insecticidal fragments may be generated from the purified toxin using, for example, cleavage with trypsin or cyanogen bromide.




It will be appreciated by persons skilled in the art that numerous variations and/or modifications may be made to the invention as shown in the specific embodiments without departing from the spirit or scope of the invention as broadly described. The present embodiments are, therefore, to be considered in all respects as illustrative and not restrictive.




References




Brunel, B., Givaudin, A., Lanois, A., Akhurst, R. J. and Boemare, N. (1997). Fast and accurate identification of Xenorhabdus and Photorhabdus species by restriction analysis of PCR-amplified 16S rRNA genes.


Applied and Envirnomental Microbiology


63, 574-580.




Henikoff, S. (1984). Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing, Gene 28, 351-359.




Innis, M. A., Gelford, D. H., Sminsky, J. J. and White, T. J. (1990). PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego.




Maniatis, T., Fritsch, E. F. and Sambrook, J. (1982). Molecular cloning: A laboratory manual. Cold spring Harbor Laboratory, Cold spring Harbor, N.Y.




Marmur J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro organisms.




Scott, K. F., Rolfe, B. G. and Shine, J. (1981). Biological nitrogen fixation: primary structure of the


Klebsiella pneumoniae


nifH and nifD genes. J. Mol. Appl. Genet. 1, 71-81.







20




1


1107


DNA


Xenorhabdus nematophilus



1
atggttatta aacccgtaac aactccgagt gtaatacaat taacgcctga tgatagagta 60
acgcctgatg ataaaggtga atatcaaccc gttgaaaagc aaatagcggg agatataata 120
cgtgtactag aattcaagca aacaaatgaa agtcatacag gattgtatgg aattgcatat 180
cgagctaaga aagtaataat agcatatgct ttagcggtaa gtggtattca taatgtctct 240
caacttccag aagactatta taaaaataag gataacacag gtagaattta tcaagaatac 300
atgtctaatc ttttatctgc actattgggt gagaatggtg atcaaatttc taaagatatg 360
gcaaatgatt ttacccagaa cgaactggag tttggaggtc aacgtcttaa aaatacctgg 420
gatattcctg atcttgagaa taaactattg gaagattatt cagatgaaga taaattatta 480
gcactatatt tctttgcttc acaagaactt ccaatggagg caaatcaaca atcaaatgca 540
gcaaattttt ttaaagtaat tgatttttta cttatcttat ctgctgtaac atcactggga 600
aaaaggattt tttcaaaaaa tttttacaat ggtctagaaa ctaaatcatt agagaattat 660
attgagagaa aaaaactttc taaacctttc tttcgaccac cgcagaagtt acctgatggc 720
agaacaggct acttggccgg tccaacaaaa gcgcctaaat tgccaacaac gtcttctaca 780
gcaacaacgt ctacagcagc ttcatctaat tggagagtta gtttgcaaaa acttagagat 840
aacccatcca gaaatacatt tatgaaaatg gatgatgctg caaaacgaaa atatagttca 900
tttataaaag aggtacaaaa gggtaatgat ccacgtgcag cagcagcaag tattggtaca 960
aaaagcggca gtaacttcga aaaactgcaa ggtagagatt tatatagtat aagactaagc 1020
caagaacaca gggtaacatt ctccataaat aatactgacc aaataatgga gatccaaagt 1080
gttggaactc attaccaaaa tatataa 1107




2


1008


DNA


Photorhabdus luminescens



2
atggttatac aattaacacc tgatgataga agtggatatc cacccgttga aaagcaaata 60
gcaggagata tagtacgtat actaaacttt aagcaaacag atgagggtca tacagcatca 120
tatggaattg aatatcgagc taagaaaata atattagctt acgctttggc tgtaagtggt 180
attcataatg tatctaaact tcctgatgac tattataaga ataaagagac tgctgagaga 240
atttatcaag aatatatgtc taatctttca tctgcactat taggtgaaaa tggtgatcaa 300
atttctaaag atatggcaaa tggtttttat aagaatgaac tggattttga aggtcaatat 360
cctcaaaaca tttggaatgt tcctgagctt gaaaataaac cattgagtgc ttattcagat 420
gacgataaat tattagcact atattttttc tctgtacagg aaattccact ggaggaaaat 480
caacaatcaa atgccgcaag attttttaaa ttaattgatt tcttatttac cttatctgct 540
gtaacttcac tgggaaggag gattttttca aaaaactttt acaatggatt agaggctaaa 600
tcattagaga attatattga gagaaaaaaa ctttctaaac ctttctttcg accaccgcag 660
agattacctg atggcagaat aggttatttg gctggaccaa cagaagcgcc taaatggaga 720
gtgagtttta aagaacttaa aaataacaaa tctaggaatg gattttctaa tatggaaggg 780
gctgcaaaac aaaagtatag ttcatttata aaagaggtac aaaagggtaa cgctccacag 840
acagcagcga aaagtattgg tacagccagt ggcagtaacc tggaaaaatt gccgaataat 900
ttatatagtg tgaggctaag ccaaaaagac agggtaacct ttactcaaaa tgatactgac 960
aatacaatga cggttcatag tgttggaact cattataaaa atatatga 1008




3


368


PRT


Xenorhabdus nematophilus



3
Met Val Ile Lys Pro Val Thr Thr Pro Ser Val Ile Gln Leu Thr Pro
1 5 10 15
Asp Asp Arg Val Thr Pro Asp Asp Lys Gly Glu Tyr Gln Pro Val Glu
20 25 30
Lys Gln Ile Ala Gly Asp Ile Ile Arg Val Leu Glu Phe Lys Gln Thr
35 40 45
Asn Glu Ser His Thr Gly Leu Tyr Gly Ile Ala Tyr Arg Ala Lys Lys
50 55 60
Val Ile Ile Ala Tyr Ala Leu Ala Val Ser Gly Ile His Asn Val Ser
65 70 75 80
Gln Leu Pro Glu Asp Tyr Tyr Lys Asn Lys Asp Asn Thr Gly Arg Ile
85 90 95
Tyr Gln Glu Tyr Met Ser Asn Leu Leu Ser Ala Leu Leu Gly Glu Asn
100 105 110
Gly Asp Gln Ile Ser Lys Asp Met Ala Asn Asp Phe Thr Gln Asn Glu
115 120 125
Leu Glu Phe Gly Gly Gln Arg Leu Lys Asn Thr Trp Asp Ile Pro Asp
130 135 140
Leu Glu Asn Lys Leu Leu Glu Asp Tyr Ser Asp Glu Asp Lys Leu Leu
145 150 155 160
Ala Leu Tyr Phe Phe Ala Ser Gln Glu Leu Pro Met Glu Ala Asn Gln
165 170 175
Gln Ser Asn Ala Ala Asn Phe Phe Lys Val Ile Asp Phe Leu Leu Ile
180 185 190
Leu Ser Ala Val Thr Ser Leu Gly Lys Arg Ile Phe Ser Lys Asn Phe
195 200 205
Tyr Asn Gly Leu Glu Thr Lys Ser Leu Glu Asn Tyr Ile Glu Arg Lys
210 215 220
Lys Leu Ser Lys Pro Phe Phe Arg Pro Pro Gln Lys Leu Pro Asp Gly
225 230 235 240
Arg Thr Gly Tyr Leu Ala Gly Pro Thr Lys Ala Pro Lys Leu Pro Thr
245 250 255
Thr Ser Ser Thr Ala Thr Thr Ser Thr Ala Ala Ser Ser Asn Trp Arg
260 265 270
Val Ser Leu Gln Lys Leu Arg Asp Asn Pro Ser Arg Asn Thr Phe Met
275 280 285
Lys Met Asp Asp Ala Ala Lys Arg Lys Tyr Ser Ser Phe Ile Lys Glu
290 295 300
Val Gln Lys Gly Asn Asp Pro Arg Ala Ala Ala Ala Ser Ile Gly Thr
305 310 315 320
Lys Ser Gly Ser Asn Phe Glu Lys Leu Gln Gly Arg Asp Leu Tyr Ser
325 330 335
Ile Arg Leu Ser Gln Glu His Arg Val Thr Phe Ser Ile Asn Asn Thr
340 345 350
Asp Gln Ile Met Glu Ile Gln Ser Val Gly Thr His Tyr Gln Asn Ile
355 360 365




4


335


PRT


Photorhabdus luminescens



4
Met Val Ile Gln Leu Thr Pro Asp Asp Arg Ser Gly Tyr Pro Pro Val
1 5 10 15
Glu Lys Gln Ile Ala Gly Asp Ile Val Arg Ile Leu Asn Phe Lys Gln
20 25 30
Thr Asp Glu Gly His Thr Ala Ser Tyr Gly Ile Glu Tyr Arg Ala Lys
35 40 45
Lys Ile Ile Leu Ala Tyr Ala Leu Ala Val Ser Gly Ile His Asn Val
50 55 60
Ser Lys Leu Pro Asp Asp Tyr Tyr Lys Asn Lys Glu Thr Ala Glu Arg
65 70 75 80
Ile Tyr Gln Glu Tyr Met Ser Asn Leu Ser Ser Ala Leu Leu Gly Glu
85 90 95
Asn Gly Asp Gln Ile Ser Lys Asp Met Ala Asn Gly Phe Tyr Lys Asn
100 105 110
Glu Leu Asp Phe Glu Gly Gln Tyr Pro Gln Asn Ile Trp Asn Val Pro
115 120 125
Glu Leu Glu Asn Lys Pro Leu Ser Ala Tyr Ser Asp Asp Asp Lys Leu
130 135 140
Leu Ala Leu Tyr Phe Phe Ser Val Gln Glu Ile Pro Leu Glu Glu Asn
145 150 155 160
Gln Gln Ser Asn Ala Ala Arg Phe Phe Lys Leu Ile Asp Phe Leu Phe
165 170 175
Thr Leu Ser Ala Val Thr Ser Leu Gly Arg Arg Ile Phe Ser Lys Asn
180 185 190
Phe Tyr Asn Gly Leu Glu Ala Lys Ser Leu Glu Asn Tyr Ile Glu Arg
195 200 205
Lys Lys Leu Ser Lys Pro Phe Phe Arg Pro Pro Gln Arg Leu Pro Asp
210 215 220
Gly Arg Ile Gly Tyr Leu Ala Gly Pro Thr Glu Ala Pro Lys Trp Arg
225 230 235 240
Val Ser Phe Lys Glu Leu Lys Asn Asn Lys Ser Arg Asn Gly Phe Ser
245 250 255
Asn Met Glu Gly Ala Ala Lys Gln Lys Tyr Ser Ser Phe Ile Lys Glu
260 265 270
Val Gln Lys Gly Asn Ala Pro Gln Thr Ala Ala Lys Ser Ile Gly Thr
275 280 285
Ala Ser Gly Ser Asn Leu Glu Lys Leu Pro Asn Asn Leu Tyr Ser Val
290 295 300
Arg Leu Ser Gln Lys Asp Arg Val Thr Phe Thr Gln Asn Asp Thr Asp
305 310 315 320
Asn Thr Met Thr Val His Ser Val Gly Thr His Tyr Lys Asn Ile
325 330 335




5


1205


DNA


Xenorhabdus nematophilus



5
ataatgggaa agtacaatgg ttattaaacc cgtaacaact ccgagtgtaa tacaattaac 60
gcctgatgat agagtaacgc ctgatgataa aggtgaatat caacccgttg aaaagcaaat 120
agcgggagat ataatacgtg tactagaatt caagcaaaca aatgaaagtc atacaggatt 180
gtatggaatt gcatatcgag ctaagaaagt aataatagca tatgctttag cggtaagtgg 240
tattcataat gtctctcaac ttccagaaga ctattataaa aataaggata acacaggtag 300
aatttatcaa gaatacatgt ctaatctttt atctgcacta ttgggtgaga atggtgatca 360
aatttctaaa gatatggcaa atgattttac ccagaacgaa ctggagtttg gaggtcaacg 420
tcttaaaaat acctgggata ttcctgatct tgagaataaa ctattggaag attattcaga 480
tgaagataaa ttattagcac tatatttctt tgcttcacaa gaacttccaa tggaggcaaa 540
tcaacaatca aatgcagcaa atttttttaa agtaattgat tttttactta tcttatctgc 600
tgtaacatca ctgggaaaaa ggattttttc aaaaaatttt tacaatggtc tagaaactaa 660
atcattagag aattatattg agagaaaaaa actttctaaa cctttctttc gaccaccgca 720
gaagttacct gatggcagaa caggctactt ggccggtcca acaaaagcgc ctaaattgcc 780
aacaacgtct tctacagcaa caacgtctac agcagcttca tctaattgga gagttagttt 840
gcaaaaactt agagataacc catccagaaa tacatttatg aaaatggatg atgctgcaaa 900
acgaaaatat agttcattta taaaagaggt acaaaagggt aatgatccac gtgcagcagc 960
agcaagtatt ggtacaaaaa gcggcagtaa cttcgaaaaa ctgcaaggta gagatttata 1020
tagtataaga ctaagccaag aacacagggt aacattctcc ataaataata ctgaccaaat 1080
aatggagatc caaagtgttg gaactcatta ccaaaatata taacctgatt tatagtagtg 1140
ataagacgta agataaatat ggaaggttgt aattctattg cacttcctca gaggtgaccg 1200
ctcag 1205




6


1388


PRT


Photorhabdus luminescens



6
Ala Ala Gly Cys Thr Thr Gly Cys Thr Ala Ala Thr Ala Ala Thr Thr
1 5 10 15
Cys Thr Thr Gly Cys Gly Thr Ala Ala Gly Thr Thr Ala Ala Thr Thr
20 25 30
Thr Thr Ala Cys Ala Thr Thr Gly Ala Ala Ala Thr Thr Ala Ala Cys
35 40 45
Gly Cys Thr Thr Ala Ala Ala Ala Ala Gly Cys Cys Ala Gly Gly Gly
50 55 60
Ala Ala Ala Ala Cys Thr Cys Thr Ala Thr Ala Thr Thr Thr Ala Ala
65 70 75 80
Ala Gly Thr Thr Gly Ala Ala Ala Thr Thr Thr Ala Thr Ala Thr Thr
85 90 95
Ala Gly Thr Ala Gly Cys Gly Ala Cys Ala Ala Ala Thr Thr Gly Cys
100 105 110
Gly Gly Ala Gly Thr Thr Thr Thr Cys Thr Gly Cys Cys Ala Gly Ala
115 120 125
Ala Ala Thr Thr Thr Cys Ala Thr Ala Gly Cys Thr Cys Ala Ala Ala
130 135 140
Thr Ala Ala Ala Cys Ala Thr Thr Ala Ala Cys Ala Thr Ala Ala Thr
145 150 155 160
Gly Gly Ala Gly Ala Ala Ala Thr Ala Thr Ala Ala Thr Gly Gly Thr
165 170 175
Thr Ala Thr Ala Cys Ala Ala Thr Thr Ala Ala Cys Ala Cys Cys Thr
180 185 190
Gly Ala Thr Gly Ala Thr Ala Gly Ala Ala Gly Thr Gly Gly Ala Thr
195 200 205
Ala Thr Cys Cys Ala Cys Cys Cys Gly Thr Thr Gly Ala Ala Ala Ala
210 215 220
Gly Cys Ala Ala Ala Thr Ala Gly Cys Ala Gly Gly Ala Gly Ala Thr
225 230 235 240
Ala Thr Ala Gly Thr Ala Cys Gly Thr Ala Thr Ala Cys Thr Ala Ala
245 250 255
Ala Cys Thr Thr Thr Ala Ala Gly Cys Ala Ala Ala Cys Ala Gly Ala
260 265 270
Thr Gly Ala Gly Gly Gly Thr Cys Ala Thr Ala Cys Ala Gly Cys Ala
275 280 285
Thr Cys Ala Thr Ala Thr Gly Gly Ala Ala Thr Thr Gly Ala Ala Thr
290 295 300
Ala Thr Cys Gly Ala Gly Cys Thr Ala Ala Gly Ala Ala Ala Ala Thr
305 310 315 320
Ala Ala Thr Ala Thr Thr Ala Gly Cys Thr Thr Ala Cys Gly Cys Thr
325 330 335
Thr Thr Gly Gly Cys Thr Gly Thr Ala Ala Gly Thr Gly Gly Thr Ala
340 345 350
Thr Thr Cys Ala Thr Ala Ala Thr Gly Thr Ala Thr Cys Thr Ala Ala
355 360 365
Ala Cys Thr Thr Cys Cys Thr Gly Ala Thr Gly Ala Cys Thr Ala Thr
370 375 380
Thr Ala Thr Ala Ala Gly Ala Ala Thr Ala Ala Ala Gly Ala Gly Ala
385 390 395 400
Cys Thr Gly Cys Thr Gly Ala Gly Ala Gly Ala Ala Thr Thr Thr Ala
405 410 415
Thr Cys Ala Ala Gly Ala Ala Thr Ala Thr Ala Thr Gly Thr Cys Thr
420 425 430
Ala Ala Thr Cys Thr Thr Thr Cys Ala Thr Cys Thr Gly Cys Ala Cys
435 440 445
Thr Ala Thr Thr Ala Gly Gly Thr Gly Ala Ala Ala Ala Thr Gly Gly
450 455 460
Thr Gly Ala Thr Cys Ala Ala Ala Thr Thr Thr Cys Thr Ala Ala Ala
465 470 475 480
Gly Ala Thr Ala Thr Gly Gly Cys Ala Ala Ala Thr Gly Gly Thr Thr
485 490 495
Thr Thr Thr Ala Thr Ala Ala Gly Ala Ala Thr Gly Ala Ala Cys Thr
500 505 510
Gly Gly Ala Thr Thr Thr Thr Gly Ala Ala Gly Gly Thr Cys Ala Ala
515 520 525
Thr Ala Thr Cys Cys Thr Cys Ala Ala Ala Ala Cys Ala Thr Thr Thr
530 535 540
Gly Gly Ala Ala Thr Gly Thr Thr Cys Cys Thr Gly Ala Gly Cys Thr
545 550 555 560
Thr Gly Ala Ala Ala Ala Thr Ala Ala Ala Cys Cys Ala Thr Thr Gly
565 570 575
Ala Gly Thr Gly Cys Thr Thr Ala Thr Thr Cys Ala Gly Ala Thr Gly
580 585 590
Ala Cys Gly Ala Thr Ala Ala Ala Thr Thr Ala Thr Thr Ala Gly Cys
595 600 605
Ala Cys Thr Ala Thr Ala Thr Thr Thr Thr Thr Thr Cys Thr Cys Thr
610 615 620
Gly Thr Ala Cys Ala Gly Gly Ala Ala Ala Thr Thr Cys Cys Ala Cys
625 630 635 640
Thr Gly Gly Ala Gly Gly Ala Ala Ala Ala Thr Cys Ala Ala Cys Ala
645 650 655
Ala Thr Cys Ala Ala Ala Thr Gly Cys Cys Gly Cys Ala Ala Gly Ala
660 665 670
Thr Thr Thr Thr Thr Thr Ala Ala Ala Thr Thr Ala Ala Thr Thr Gly
675 680 685
Ala Thr Thr Thr Cys Thr Thr Ala Thr Thr Thr Ala Cys Cys Thr Thr
690 695 700
Ala Thr Cys Thr Gly Cys Thr Gly Thr Ala Ala Cys Thr Thr Cys Ala
705 710 715 720
Cys Thr Gly Gly Gly Ala Ala Gly Gly Ala Gly Gly Ala Thr Thr Thr
725 730 735
Thr Thr Thr Cys Ala Ala Ala Ala Ala Ala Cys Thr Thr Thr Thr Ala
740 745 750
Cys Ala Ala Thr Gly Gly Ala Thr Thr Ala Gly Ala Gly Gly Cys Thr
755 760 765
Ala Ala Ala Thr Cys Ala Thr Thr Ala Gly Ala Gly Ala Ala Thr Thr
770 775 780
Ala Thr Ala Thr Thr Gly Ala Gly Ala Gly Ala Ala Ala Ala Ala Ala
785 790 795 800
Ala Cys Thr Thr Thr Cys Thr Ala Ala Ala Cys Cys Thr Thr Thr Cys
805 810 815
Thr Thr Thr Cys Gly Ala Cys Cys Ala Cys Cys Gly Cys Ala Gly Ala
820 825 830
Gly Ala Thr Thr Ala Cys Cys Thr Gly Ala Thr Gly Gly Cys Ala Gly
835 840 845
Ala Ala Thr Ala Gly Gly Thr Thr Ala Thr Thr Thr Gly Gly Cys Thr
850 855 860
Gly Gly Ala Cys Cys Ala Ala Cys Ala Gly Ala Ala Gly Cys Gly Cys
865 870 875 880
Cys Thr Ala Ala Ala Thr Gly Gly Ala Gly Ala Gly Thr Gly Ala Gly
885 890 895
Thr Thr Thr Thr Ala Ala Ala Gly Ala Ala Cys Thr Thr Ala Ala Ala
900 905 910
Ala Ala Thr Ala Ala Cys Ala Ala Ala Thr Cys Thr Ala Gly Gly Ala
915 920 925
Ala Thr Gly Gly Ala Thr Thr Thr Thr Cys Thr Ala Ala Thr Ala Thr
930 935 940
Gly Gly Ala Ala Gly Gly Gly Gly Cys Thr Gly Cys Ala Ala Ala Ala
945 950 955 960
Cys Ala Ala Ala Ala Gly Thr Ala Thr Ala Gly Thr Thr Cys Ala Thr
965 970 975
Thr Thr Ala Thr Ala Ala Ala Ala Gly Ala Gly Gly Thr Ala Cys Ala
980 985 990
Ala Ala Ala Gly Gly Gly Thr Ala Ala Cys Gly Cys Thr Cys Cys Ala
995 1000 1005
Cys Ala Gly Ala Cys Ala Gly Cys Ala Gly Cys Gly Ala Ala Ala
1010 1015 1020
Ala Gly Thr Ala Thr Thr Gly Gly Thr Ala Cys Ala Gly Cys Cys
1025 1030 1035
Ala Gly Thr Gly Gly Cys Ala Gly Thr Ala Ala Cys Cys Thr Gly
1040 1045 1050
Gly Ala Ala Ala Ala Ala Thr Thr Gly Cys Cys Gly Ala Ala Thr
1055 1060 1065
Ala Ala Thr Thr Thr Ala Thr Ala Thr Ala Gly Thr Gly Thr Gly
1070 1075 1080
Ala Gly Gly Cys Thr Ala Ala Gly Cys Cys Ala Ala Ala Ala Ala
1085 1090 1095
Gly Ala Cys Ala Gly Gly Gly Thr Ala Ala Cys Cys Thr Thr Thr
1100 1105 1110
Ala Cys Thr Cys Ala Ala Ala Ala Thr Gly Ala Thr Ala Cys Thr
1115 1120 1125
Gly Ala Cys Ala Ala Thr Ala Cys Ala Ala Thr Gly Ala Cys Gly
1130 1135 1140
Gly Thr Thr Cys Ala Thr Ala Gly Thr Gly Thr Thr Gly Gly Ala
1145 1150 1155
Ala Cys Thr Cys Ala Thr Thr Ala Thr Ala Ala Ala Ala Ala Thr
1160 1165 1170
Ala Thr Ala Thr Gly Ala Thr Gly Ala Gly Thr Ala Ala Thr Cys
1175 1180 1185
Thr Cys Thr Gly Ala Cys Thr Thr Cys Gly Ala Thr Thr Gly Ala
1190 1195 1200
Cys Ala Gly Ala Gly Cys Ala Thr Thr Thr Thr Thr Ala Ala Gly
1205 1210 1215
Cys Thr Cys Thr Cys Ala Thr Thr Thr Thr Cys Thr Cys Ala Ala
1220 1225 1230
Cys Gly Gly Gly Ala Gly Thr Cys Thr Cys Ala Thr Ala Ala Gly
1235 1240 1245
Gly Cys Gly Thr Thr Thr Thr Ala Cys Thr Thr Thr Thr Cys Ala
1250 1255 1260
Ala Gly Cys Cys Ala Cys Thr Ala Thr Gly Thr Gly Gly Thr Cys
1265 1270 1275
Thr Gly Thr Gly Ala Thr Ala Ala Thr Thr Gly Thr Ala Ala Ala
1280 1285 1290
Ala Cys Gly Cys Cys Thr Thr Cys Thr Thr Thr Thr Ala Gly Cys
1295 1300 1305
Cys Ala Ala Thr Ala Cys Ala Cys Thr Thr Thr Ala Cys Thr Ala
1310 1315 1320
Cys Cys Ala Ala Gly Ala Ala Ala Ala Thr Ala Thr Ala Thr Ala
1325 1330 1335
Cys Cys Cys Thr Ala Thr Gly Gly Ala Thr Thr Thr Cys Ala Ala
1340 1345 1350
Gly Ala Thr Gly Gly Ala Thr Cys Gly Cys Gly Gly Cys Gly Gly
1355 1360 1365
Cys Ala Ala Gly Gly Gly Ala Gly Cys Gly Ala Ala Thr Cys Cys
1370 1375 1380
Cys Cys Gly Gly Gly
1385




7


21


DNA


Artificial Sequence




Derived from X. nematophilus





7
ttagcggtaa gtggtattca t 21




8


21


DNA


Artificial Sequence




Derived from X. nematophilus





8
aggcaaatca acaatcaaat g 21




9


20


DNA


Artificial Sequence




Derived from X. nematophilus





9
gacgtaaact aacaactaaa 20




10


21


DNA


Artificial Sequence




Derived from X. nematophilus





10
tgatggcaga acaggctact t 21




11


21


DNA


Artificial Sequence




Derived from X. nematophilus





11
tctgcaacaa cgacatcttc t 21




12


20


DNA


Artificial Sequence




Derived from X. nematophilus





12
ggacacaaga accgaatcag 20




13


20


DNA


Artificial Sequence




Derived from P. luminescens





13
atggtgaatg tcggtttcgc 20




14


20


DNA


Artificial Sequence




Derived from P. luminescens





14
tgaactggat tttgaaggtc 20




15


20


DNA


Artificial Sequence




Derived from P. luminescens





15
gcagtagact tattcgtgag 20




16


20


DNA


Artificial Sequence




Derived from P. luminescens





16
ctttcgacca ccgcagagat 20




17


20


DNA


Artificial Sequence




Derived from P. luminescens





17
gtaaatccgc gaagacaacc 20




18


20


DNA


Artificial Sequence




Derived from P. luminescens





18
tgacggttca tagtgttgga 20




19


20


DNA


Artificial Sequence




Derived from P. luminescens





19
aggttgtgat acttggcagt 20




20


20


DNA


Artificial Sequence




Derived from P. luminescens





20
ccatcatttc acataaccga 20






Claims
  • 1. An isolated polynucleotide molecule encoding an insecticidal toxin, said polynucleotide molecule comprising a nucleotide sequence shown as SEQ ID NO:1.
  • 2. A recombinant microorganism, the microorganism being characterised in that it is transformed with and expresses the polynucleotide molecule according to claim 1.
  • 3. The recombinant microorganism according to claim 2 wherein the microorganism is selected from the group consisting of a bacterium, a protozoon and a yeast.
  • 4. A method of producing an insecticidal toxin, said method comprising:(i) culturing the microorganism according to claim 2 under conditions suitable for the expression of the polynucleotide molecule; and (ii) recovering the insecticidal toxin.
  • 5. A plant transformed with, and capable of expressing the polynucleotide molecule according to claim 1.
Priority Claims (1)
Number Date Country Kind
PO 8088 Jul 1997 AU
PCT Information
Filing Document Filing Date Country Kind
PCT/AU98/00562 WO 00
Publishing Document Publishing Date Country Kind
WO99/03328 1/28/1999 WO A
US Referenced Citations (1)
Number Name Date Kind
5972687 Smigielski et al. Oct 1999 A
Foreign Referenced Citations (5)
Number Date Country
0142924 Sep 1984 WO
WO 9500647 Jan 1995 WO
9500647 Jan 1995 WO
WO9500647 Jan 1995 WO
WO 9717432 May 1997 WO
Non-Patent Literature Citations (16)
Entry
Jouanin et al. Transgenic plants for insect resistance Plant Science 131 1998 1-11.*
Smigocki et al. cytokinin-mediated insect resistance in Nicotiana plants transformed with the ipt gene 23: 325-335 1993.*
Pang et al. Expression of a gene encoding a scorpion insectotoxin peptide in yeast, bacteria and plants Gene 116 1992 165-172.*
Broun et al. Catalytic plasticity of fatty acid modification enzymes underlying chemical diversityy of plant lipids Science vol. 282 Nov. 13, 1998.*
Lazar et al. Transforming growth factor a: mutation of aspartic acid 47 and leucine 48 resultd in different biological activites Mar. 1988 p. 1247-1252 vol. 8, No. 3.*
Bowie et al. Deciphering the message in protein sequences: tolerance to amino acid substitutions Science, vol. 247.*
Hongsthong et al: “Optimum conditions for insecticidal toxin production by Photorhabdus luminescens” Abstracts of the General Meeting of the American Society for Microbiology, The Society, Washington, DC, US, No. 95, May 1, 1995, pp. 408-AbstrQ-48, XP002076055 ISSN: 1060-2011.
Bowen DJ et al: “Extracellular Insecticidal Factor Produced by Xenorhabdus luminescens” Abstracts of the Annual Meeting of the American Society for Microbiology, Washington, DC, US, vol. 90, 1989, p. 228 XP002119858 ISSN: 0094-8519.
Clarke David J et al:Virulence mechanisms of Photorhabdus sp. strain K122 toward wax moth larvae. Journal of Invertebrate Pathology, vol. 66, No. 2, 1995, pp. 149-155, XP001064286 ISSN: 0022-2011.
Hu, k. et al.: “Mortality of Plant-Parasitic Nematodes Caused by Bacterial (Xenorhabdus SPP. and Photorhabdus Luminescens) Culture Media” Journal of Nematology, Society of Nematologists, College Park, MD, US, vol. 27, No. 4, 1995, pp. 502-503, XP000905673 ISSN: 0022-300X.
David Joseph Bowen: “Characterization of a High Molecular Weight Insecticidal Protein Complex Produced by the Entomopathogenic bacterium Photorhabdus luminescens (Nematodes, Biological Control)” Thesis Universidty Wisconsin, XX, XX, May 1, 1995, XP002076022.
B. Brunel et al., Fast and Accurate Identification of Xenorhabdus and Photorhabdus Species by Restriction Analysis of PCR-Amplified 16S rRNA Genes, Applied and Environmental Microbiology, vol. 63, Feb. 1997, pp. 574-580.
S. Henikoff, Unidirectional Digestion with Exonuclease III Creates Targeted Breakpoints for DNA Sequencing, Gene, vol. 28, 1984, pp. 351-359.
M. A. Innis et al., PCR Protocols: A Guide to Methods and Applications, Academic Press, Inc. 1990, pp. 3-20.
J. Marmur, A Procedure for the Isolation of Deoxyribonucleic Acid from Micro-organisms, J. Mol. Biol., vol. 3, 1961, pp. 208-218.
K.F. Scott et al., Biological Nitrogen Fixation: Primary Structure of the Klebsiella Pneumoniae nifH and nifD Genes, Journal of Molecular and Applied Genetics, vol. 1, pp. 71-81.