Functionalized nucleic acid nanostructures for RNA delivery

Abstract

The present disclosure provides cell-penetrating nucleic acid nanostructures well suited as transfection reagents for the delivery of bioactive agents to cells both in vivo and in vitro for research, diagnostic, and/or therapeutic purposes.

Description

SEQUENCE LISTING

The instant application contains a Sequence Listing which has been submitted electronically in ASCII format and is hereby incorporated by reference in its entirety. Said ASCII copy, created on Mar. 25, 2021, is named 254-14350_SL.txt and is 55,697 bytes in size.

BACKGROUND

DNA origami is a method through which single-stranded DNA can be systematically folded into complex and molecularly defined two- and three-dimensional nanostructures using oligonucleotide hybridization and inter-strand cross-overs to dictate the final shape. In the last 10 years, this technique has proven utility in applications including cellular imaging, drug delivery, bio-sensing and nano-mechanics through proper functionalization of DNA origami with aptamers, antibodies, enzymes, and fluorescent dyes. Important biological properties of DNA origami nanostructures include defined dimensions and shape which can be established through the programmed routing of oligonucleotide staples within the single-stranded scaffold DNA, as well as the biocompatible nature of DNA material. The use of DNA origami nanostructures in drug delivery has already proven effective for specific and tunable release or killing of cancer cells.

Intracellular delivery of small interfering RNA (siRNA) for gene silencing, which can be used to manipulate cellular phenotypes and as a therapy, is a challenging task. Current methods are often mediated by micelle type structures composed of synthetic and semi-synthetic polymers with cationic properties to encapsulate the siRNA for cellular internalization, which have two inherent disadvantages in the methods used to transport negatively charged RNA across the lipid bilayer: increased membrane permeability and immunotoxicity. The optimal delivery system needs to encompass highly efficient cell uptake, low cytotoxicity and immunotoxicity, high biocompatibility, include targeting moieties for in vivo spatiotemporal delivery and exhibit low off-target effects.

Methods to enhance the delivery of therapeutics have incorporated ligands for cell-specific receptor-mediated entry and cell penetrating peptides for improved, but generally non-specific, entry. Receptor targeted drug delivery takes advantage of receptors for small molecules and proteins such as vitamins, antibodies, transferrin, growth factors and aptamers which may be present only on a subset of cell types. Tailoring the targeting ligand for the disease of interest is an important step in cell-specific receptor-mediated delivery. In cancer targeted therapies, folic acid and HER2 are two well established ligands for cell uptake. Cell penetrating peptides (CPP) are emerging as an alternative to ligand mediated entry because CPPs generally enter in a noninvasive manner and do not compromise the integrity of cell membranes. Hundreds of CPPs have been described composed of both naturally occurring and synthetic sequences. The sequence identity of each CPP appears to be what dictates its method and efficiency of entry with peptides entering both endocytic and direct penetration pathways. Delivery of siRNA duplexes by reductive release from carriers such as dendrimers, poly-D-arginine, folate-PEG, copolymers, CPPs and DNA has been demonstrated previously.

SUMMARY

A functionalized 24 helix bundle DNA origami nanostructure (CPP-DON) can be efficiently assembled in a one-pot reaction with cell penetrating peptides and subsequently conjugated with siRNAs as an effective transfection reagent. In one example, a CPP-DON-siRNA nanostructure is internalized by HeLa cells and siRNA duplexes attached by disulfide bonds are released following cellular uptake in the reductive intracellular milieu to silence gene expression in human cells. One targeting approach has used folic acid because its specific receptor is not expressed on healthy cells, but is abundant on the surface of cancer cells. In addition to folic acid, three other widely used CPPs (Penetratin, MAP, Hph-1) were used to study the efficiency of DNA origami internalization by human cells. Findings demonstrate that CPP-DON-siRNA nanostructures can penetrate HeLa cells and silence gene expression at a level to commercially available lipid-based transfection reagents. Furthermore, this CPP-DON-siRNA delivery approach is bio-compatible and elicits no detectable cytotoxicity while maintaining stability in serum and low Mg²⁺ environments important for in vitro and in vivo human studies. The present disclosure describes the utility of DNA and RNA origami as a RNA transfection reagent and provides a basis for exploration of its application as a therapeutic reagent both in vivo and in vitro for diagnostic, treatment, and/or research purposes for cancer and other genetically-related conditions.

BRIEF DESCRIPTION OF DRAWINGS

FIG. 1A shows a schematic for the thermal assembly of DNA origami nanostructures according to one aspect of the disclosed technology.

FIG. 1B shows agarose gel electrophoresis of assembled CPP containing structures.

FIG. 1C shows TEM image of assembled CPP-DON with scale bar for reference.

FIG. 2A shows electrophoresis of DNA origami nanostructures according to one aspect of the disclosed technology.

FIG. 2B shows electrophoresis of DNA origami nanostructures according to one aspect of the disclosed technology.

FIG. 3 shows visualization of DNA nanostructure entry into HeLa cells.

FIG. 4 is a graph showing in vitro gene silencing by CPP-DON-siRNA.

FIG. 5 is a graph showing cellular toxicity following CPP-DON-siRNA treatment.

FIG. 6 shows a computer aided design of a 24 helix bundle nanostructure according to one aspect of the disclosed technology.

FIG. 7 shows visualization of distribution of CPP-DON-siRNA within HeLa cells.

DESCRIPTION

Before the present methods, implementations and systems are disclosed and described, it is to be understood that this invention is not limited to specific methods, specific components, implementation, or to particular compositions, and as such may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular implementations only and is not intended to be limiting. Neither are explanations that have been provided to assist in understanding the disclosure meant to be limiting.

As used in the specification and the claims, the singular forms “a,” “an” and “the” include plural referents unless the context clearly dictates otherwise. Ranges may be expressed in ways including from “about” one particular value, and/or to “about” another particular value. When such a range is expressed, another implementation may include from the one particular value and/or to the other particular value. Similarly, when values are expressed as approximations, for example by use of the antecedent “about,” it will be understood that the particular value forms another implementation. It will be further understood that the endpoints of each of the ranges are significant both in relation to the other endpoint, and independently of the other endpoint.

“Optional” or “optionally” means that the subsequently described event or circumstance may or may not occur, and that the description includes instances where said event or circumstance occurs and instances where it does not. Similarly, “typical” or “typically” means that the subsequently described event or circumstance may or may not occur, and that the description includes instances where said event or circumstance occurs and instances where it does not.

A 24 helix bundle DON to deliver siRNA molecules into human cells was created. The CPP-DON-siRNA structure of the present disclosure was designed to be approximately 100 nm by 14 nm without any functionalization using the DNA origami design software caDNAno built upon the M13mp18 (7249 nt) scaffold. By routing staples to maximize 3′ termini overhanging the structure, one example design included 158 extruding single-stranded overhangs for annealing of functionalized oligonucleotides and attachment of siRNA duplexes and cell penetrating moieties. FIG. 1A shows Schematic for thermal assembly of DNA origami nanostructures from single-stranded DNA scaffold, oligonucleotide staples and functionalized oligonucleotide linkers. Reduced siRNA duplexes are incorporated following purification as described below.

The complete caDNAno design schematic and oligonucleotide sequences are provided in FIG. 6 which shows a computer aided design of the 24 helix bundle nanostructure. The 24 helix bundle structure has dimensions of approximately 100 nm×14 nm without functionalization and 100 nm×18 nm after functionalization with CPP and siRNA. The design includes a total of 158 3′ overhanging single strands for attachment of CPPs and siRNAs. Following a one-pot thermal annealing reaction, the assembled nanostructures were subjected to agarose gel electrophoresis to ensure complete and desired nanostructures. Agarose gel electrophoresis of assembled CPP containing structures with the identity of CPP in observed bands signified to the left are shown in FIG. 1B. Two bands were present with each of our four cell penetrating peptides corresponding to monomeric and dimeric forms of the 24 helix bundle. Excess staple oligonucleotides (included at 5× excess) are evident as faster migrating signal in the gel. Purified nanostructures were additionally visualized by transmission electron microscopy (TEM) revealing the expected 24 helix bundles. FIG. 1C shows TEM image of assembled CPP-DON with scale bar for reference.

Successful application of the disclosed CPP-DON-siRNA nanostructure as a transfection reagent relies upon its stability in culture media. Stability was assessed under culture conditions including nuclease rich serum and weak cationic solutions. It was recently described that unmodified DNA nanostructures have varied levels of stability under conditions of Mg′ depletion and in the presence of fetal bovine serum, a nuclease rich environment. To address the stability of the present CPP-DON-siRNA nanostructures in these environments, assembled nanostructures were incubated in DMEM supplemented with EDTA to chelate away existing metals or supplemented with MgSO₄, and also in DMEM supplemented with 10% FBS for 24 h. Even when all Mg²⁺ was chelated away from the media, the disclosed CPP-DON-siRNA nanostructure remained stable (FIG. 2A). Upon incubation in DMEM medium supplemented with 10% FBS that was either untreated or heat inactivated at 75° C. for between 15 s and 10 min, the nanostructure was relatively unaffected even without heat treatment (FIG. 2B). Considering the concentration of Mg²⁺ in human plasma and serum is between 0.75 mM and 1.0 mM, the disclosed assembled nanostructures will be stable in delivery applications.

To be used as either a transfection reagent or in disease therapy CPP-DON-siRNA nanostructures must enter cells and deliver siRNA duplexes to act in siRNA pathways. The combination of CPPs conjugated directly to siRNA duplexes or other anti-sense technologies has been well established using a range of CPPs attached to anti-sense molecules by thiol linkage for cytoplasmic release. To demonstrate the disclosed nanostructures will function as desired CPP-DON-siRNA nanostructures were incubated with HeLa cells overnight to mimic typical siRNA delivery and knockdown experiments. In order to track the entry of nanostructures and the fate of siRNAs we used siRNA duplexes labeled at the 5′ end of the sense strand with Cyanine-5 (Cy5) dye which enabled detection under with 640 nm wavelength laser excitation. Using an automated Nikon TiE microscope HeLa cells were imaged by differential interference contrast (DIC) microscopy and Cy5 fluorescence. Each CPP-siRNA nanostructure was internalized by HeLa cells, with each CPP exhibiting different levels and patterns of internalized signal (FIG. 3). Since each 24 helix bundle structure possesses a 10:1 ratio of siRNA to CPP and each structure holds 158 functionalization points, the bright foci observed are expected to be the nanostructures which have not undergone complete reduction to release all siRNAs and diffuse signal intensity are presumed to be released siRNAs. To ensure signal was indeed internalized and not retained on the cell membrane, example frames were captured of a Z-series movement capturing cell images from bottom to top of cells. This demonstrated the signal is in-fact internalized and dispersed throughout the cells as shown in FIGS. 3 and 7. FIG. 3 shows a visualization of DNA nanostructure entry into HeLa cells. 24 helix bundle nanostructures containing folate or cell penetrating peptides and Cy5 labeled siRNA duplexes (640 nm excitation) were added to HeLa cells and monitored via differential interference contrast (DIC) microscopy and epifluorescence after overnight incubation. Representative images of each CPP are shown. The left most column is DIC image of cells, the middle column depicts Cy5 labeled nanostructures or siRNA and the right most column depicts the merge of DIC and 670 nm channels. Scale bars represent 20 μm. FIG. 7 shows distribution of CPP-siRNA DONs within HeLa cells. Cy5-labelled CPP-DNA nanostructures (670 pM) were incubated overnight before epifluoresence imaging. Z-series videos were captures for each CPP-DON-siRNA nanostructure. Representative frames from the bottom to top of each series were extracted. In some examples the signal appears different for each cell penetrating moiety suggesting there are different methods and efficiencies of internalization for each peptide and folate.

One example of in vitro gene silencing by CPP-DON-siRNA that attached with specific siRNA to fLuc mRNA for HeLa Luc-2A-GFP stable cells is presented in FIG. 4. In this example in vitro gene silencing by CPP-DON-siRNA. HeLa cells were seeded in 24 well plates and grown for 24 hours before treatment with CPP-siRNA functionalized DNA nanostructures (black bars) or commercial transfection reagents (white bars). Both treatment types used the same siRNA duplexes specific for fLuc mRNA. Quantification of fLuc and GFP signals was performed 24 hours after siRNA treatment, and measurements were normalized to the GFP signal of each sample and normalized to untreated cells (100% fLuc expression). All samples were performed in triplicate with bars representing the mean silencing. In this example as transfection reagent, CPP-DON-siRNA can achieve siRNA mediated gene silencing as effective as commercially available Lipofectamine RNAiMax (ThermoFisher Scientific) and Xfect (Clontech) transfection reagents.

The production of a cytotoxic response following CPP-DON-siRNA treatment was tested using a lactate dehydrogenase (LDH) assay kit (Pierce). This cytotoxicity assay measures the release of LDH into cellular media following treatment from cells which experienced membrane perturbations. Cells were treated with CPP-DON-siRNA nanostructures at 670 pM for 1 h at 37° C. before being mixed with an equal volume of reaction mixture. LDH activity was assessed by the difference between A490 and A680 measurements and total lysis controls were performed using supplied lysis buffer. No differences were observed between the CPP-DON-siRNA treatment and addition of buffer alone. As shown in FIG. 5, HeLa cells were passaged and seeded in triplicate in 24 well plates at 70,000, 40,000, 20,000 and 10,000 cells/well and grown overnight. Treatments were performed by addition of CPP-DON-siRNA (MAP as CPP) or DNA origami buffer alone. Total lysis was performed by adding lysis buffer as the treatment. Absorbance at 490 nm and 680 nm was measured and graphed as the difference for each treatment. This result correlates with previous studies on DNA origami cellular toxicity and demonstrates our CPP-DON-siRNA approach does not elicit a cytotoxic response.

The need for safe and effective methods for siRNA drug delivery, both in vitro and in vivo, led us to investigate the use of DNA origami as a cell transfection reagent. Delivery of siRNAs to numerous human cell types has been investigated using a broad array of methods including viral vectors, electroporation, and transfection reagents. Transfection reagents are widely used in research and provide advantages of high efficiency and reproducibility in many cell types, but do not perform well in primary and non-dividing cells or in vivo applications. Some of the largest hurdles for successful delivery of any RNA molecule are cell entry, RNA stability and cytotoxicity. Efficient delivery necessitates the use of a nano-carrier to transport strongly negatively charged RNA across cell membranes. Carriers such as dendrimers, polymers, lipids, gold and iron oxide nanoparticles and carbon nanotubes elicit varied toxicity and immune responses. Nanoparticle systems such as dendrimer type bio-reducible polymers (PAM-ABP), polymerized siRNA/polyethylenimine complexes, poly(oligo-D-arginine) and hydrogels have been reported as siRNA delivery vehicles and have shown varied gene silencing efficiency and cytotoxicity. A tetrahedral DNA oligonucleotide/siRNA nanoparticle with ˜28.6 nm diameter was recently demonstrated to provide higher than 50% reduction in GFP expression in vitro. When applied in vivo this method showed dose-dependent accumulation of nanoparticles and tumor targeting ability while accomplishing a significant reduction of reporter gene expression in a mouse model.

The present disclosure demonstrates that a functionalized 24 helix bundle scaffolded DNA origami nanostructure of 100 nm×14 nm is capable of penetrating HeLa cell membranes, transporting siRNA cargo inside cells, and effectively silencing gene expression. Importantly, this approach elicits no cytotoxic response and is stable for at least 24 h in cell culture. The implementation of scaffolded nanostructures allows for attachment of up to 158 siRNA duplexes per structure whereas the previously reported oligonucleotide nanostructure was limited to only 6 siRNA duplexes attached to one structure. Thus, the disclosed scaffolded design provides a 26-fold improvement over current DNA nanoparticle-based siRNA approaches at an equal concentration. The present disclosure demonstrates siRNA mediated gene silencing after 24 h equivocal to commercially available Lipofectamine RNAiMax and Xfect transfection reagents using DNA origami nanostructures synthesized in a simple one-pot reaction with reducible siRNAs and widely used cell penetrating peptides or folic acid functionalized on their surface. Extension of this technique to other cell types and adjustments to the identity or density of CPPs on the nanostructure may be able to further enhance its' silencing efficacy.

The denaturation of nucleic acid nanostructures due to depletion of divalent cations and nuclease digestion in biological environments are two major challenges to successful in vitro and in vivo applications. Previous studies have reported contradictory results on the stabilities of DNA nanostructures produced via the origami method in cell culture medium. DNA origami nanostructures exposed to cell lysate were found to remain largely intact, and it has been observed that the sensitivity of nanostructures to cation depletion is design and time dependent. The present disclosure's experimental results demonstrate that the 24 helix bundle DNA origami nanostructure retains its nanostructure integrity and functions in Mg′ depleted media and FBS medium (a blood product known to contain a variety of nucleases), as well as in in vitro cell culture process.

Cellular internalization of foreign materials is commonly accomplished through endocytic pathways which potentially leads to the destruction of the internalized material following fusion with nuclease rich lysosomes. Unmodified DNA origami nanostructures are known to be internalized through these same endocytic pathways which raise the risk of degradation following uptake. To accomplish effective siRNA silencing, siRNA duplexes must evade this nuclease degradation and remain in the cytoplasm to act in silencing pathways. Fortuitously, the fate of assembled DNA origami nanostructures or CPPs following internalization is not important for the effective siRNA delivery. By decorating the DNA origami nanostructures with positively charged CPPs we believe we can introduce, and perhaps favor, non-endocytic direct penetration pathways in addition to the typical endocytic pathway for uptake. At the same time, the presence of strong positively charged peptides on the surface of CPP-DON-siRNA nanostructures can assist in neutralizing the negative charges of the DNA/RNA composition and further promote migration across the cellular membrane into the cytoplasm. Hph-1 and Penetratin conjugated CPP-DON-siRNA structures yielded more internalized fluorescence than MAP conjugated structures which appear be stuck at the cell membrane (As seen in FIGS. 3 and 7). This likely reflects MAP's previously described toxicity but does not necessarily correlate with siRNA silencing as it remains possible for duplexes to dissociate into the cytoplasm while residing in the membrane. The levels of siRNA silencing observed for each cell penetrating moiety may be indicative of the dominant internalization pathway used. Folate conjugated CPP-DON-siRNA nanostructures yielded the least efficient siRNA silencing and are known to internalized through receptor mediated endocytosis which is expected to lead to lysosomal fusion and release. In one example, MAP was the most efficient CPP conjugate tested and is known to traverse cell membranes by direct penetration. While the method of internalization may be a predictor of silencing efficiency it should be noted that differences in uptake have been observed for various cell-types over an array of conjugated peptides. All together the simplicity and consistency of this origami nanostructure platform make it a promising candidate as a siRNA transfection reagent and for in vivo gene silencing or gene editing therapeutics.

Folding DNA Origami Nanostructures.

In a first example nanostructures were prepared by combining 10 nM single-stranded M13mp18 scaffold, 50 nM of each staple oligonucleotide and folding buffer (5 mM Tris pH 8, 1 mM EDTA, 12 mM MgCl₂). Complementary functionalized oligonucleotides were included for hybridization with overhanging staple oligos. This allowed for a one-pot assembly of CPP containing structures and provides the ability to control the ratio of CPP/siRNA by controlling the overall ratio of excess functionalized pool. In these experiments, 10 non-conjugated Amino-C6 overhang complements were included for every 1 CPP-conjugated Amino-C6 overhanging complement. One-pot assembly was carried out by rapid heat denaturation to 65° C. followed by slow cooling to 25° C. over 12 h using a thermocycler. To remove free staple oligonucleotides samples were precipitated with an equal volume of 20% (w/v) PEG 8000, 1 M NaCl, 5 mM Tris and 1 mM EDTA followed by conjugation of siRNA duplexes. Assembled structures were suspended in TE pH 8 and analyzed by electrophoresis on a 2% agarose gels (0.5×TBE, 11 mM MgCl₂) at 80 V for 3-4 h in an ice-water bath.

Functionalization of Oligonucleotides.

The attachment of three independent cell penetrating peptides (Table 1), folic acid and siRNA duplexes was accomplished using crosslinker chemistry to attach each to the 5′ terminus of Amino-C6 modified oligonucleotides. For CPP linkages, Amino-C6 oligonucleotides were incubated in deionized water with 50× Sulfo-SMCC for 30 min at 25° C. and buffer exchanged to remove unreacted Sulfo-SMCC using buffer exchange columns. The column eluate was then mixed in a 1:1 ratio with C-terminal cysteine containing CPPs and reacted overnight at 25° C. resulting in covalently linked CPP-oligonucleotides. For coupling folic acid to linker oligonucleotides, carboxyl containing folic acid was incubated with 10× molar excess EDC and Sulfo-NHS was added at 5 mM final concentration for NHS activation. The reaction was mixed and incubated at 25° C. for 30 min before the pH was raised to pH 7.4 with 2×PBS. Equimolar Amino-C6 linker oligo was added to NHS activated folic acid and reacted overnight at 25° C. Finally, the reaction was quenched with 10 mM hydroxylamine.

siRNA Linkage to CPP-DONs.

Assembled DNA nanostructures were purified by PEG/NaCl precipitation as described above. After removal of excess staple oligonucleotides the assembled nanostructures were incubated with 0.5 mM Sulfo-LC-SPDP for 30 min at 25° C. to activate the Amino-C6 terminated oligo staples. Structures were buffer exchanged through buffer exchange columns into PBS-EDTA and 2× excess siRNA duplexes containing reduced thiol termini were added and incubated overnight at 25° C. for conjugation. The resulting linkage was: oligonucleotide-C6-S-S-siRNA duplex.

Stability of DNA Origami Nanostructures.

For cation depletion experiments DMEM medium containing 0.8 mM Mg²⁺ was supplemented with 10% FBS and modified to 1 mM, 2 mM, 4 mM, 6 mM, 8 mM and 10 mM Mg²⁺ by addition of MgCl₂ from 1 M stock solution. Each nanostructure was mixed 1:3 with adjusted media and incubated 24 h at 37° C. For serum stability experiments FBS was inactivated at 75° C. for 15 s, 30 s, 60 s, 120 s, 300 s and 600 s. DMEM was supplemented with each inactivated FBS and mixed with nanostructures in a 1:3 ratio and incubated 24 h at 37° C. Analysis of nanostructures after exposure to either cation depletion or inactivated serum was performed by agarose gel electrophoresis through a 2% agarose gel with 11 mM MgCl₂ and 0.5×TBE.

In Vitro Cytotoxicity Assay.

To evaluate the relative toxicity of CPP-DON-siRNA mediated delivery to cells we performed a LDH Cytotoxicity Assay. Wells containing 10,000, 20,000, 40,000 and 70,000 HeLa cells were incubated overnight at 37° C., 5% CO₂. The following day CPP-DON-siRNA was added at 670 pM. As controls, cells were treated with DNA origami buffer (10 mM Tris pH 8, 1 mM EDTA, 12 mM MgCl₂) or assay kit lysis reagent to assess spontaneous and maximum LDH activity, respectively. All assays were performed in triplicate.

Gene Silencing.

All experiments were performed using HeLa Luc-2A-GFP stable cells grown in DMEM complete medium at 37° C. with 5% CO₂. Cells between passage 3 and 10 were plated in 24-well tissue culture plates and incubated overnight before treatment. Lipofectamine RNAiMax and siRNA delivery systems were used as commercially available siRNA delivery comparisons following manufacturer's instructions. Assembled CPP-DON-siRNA nanostructures were added to 40,000 cells at 20 nM nanostructure concentration and 2.4 μM siRNA concentration. siRNA duplexes (sense: 5′-AUGCCAAAAACAUUAAGAAdTdT-3′ (SEQ ID NO: 1), antisense: 5′-UUCUUAAUGUUUUUGGCAUdTdT-3′ (SEQ ID NO: 2)) specific to fLuc mRNA were used in silencing studies. All siRNAs were attached to Sulfo-LC-SPDP activated DONs at pyridyl disulfides using a S-SC3 terminal modified sense strand siRNA. 24 h after siRNA delivery, cells were lysed and the fLuc activity was assessed using Firefly Luciferase Glow Assay Kit. Luminescence was normalized for each cell lysate using GFP signal expressed independently of fLuc.

In the preceding examples the disclosed DNA origami nanostructures were used to deliver siRNA for illustrative purposes only. In other examples, other substances may be attached to nucleic acid nanostructures for delivery into cells. Such attached substances may include miRNA, shRNA, asRNA, mRNA, crRNA, tracrRNA and RNA vaccines.

TABLE 1
Amino acid sequence for cell penetrating peptides
used in some examples. Table 1 discloses SEQ
ID NOS 3-5, respectively, in order of appearance)
Peptide    Sequence
Hph-1      YARVRRRGPRRGGC
MAP        KLALKLALKALKAALKLAC
Penetratin RQIKIWFQNRRMKWKKC

Table 2. List of staple sequences used to fold the 7249 bp long M13mp18 bacteriophage scaffold into the 24 helix bundle nanostructure in some examples. The 158 staples containing overhang sequence (5′-CTCTGGTTAACGTGTCT-3′ (SEQ ID NO: 6)) for incorporation of CPP and siRNA are shown in bold.

TABLE 2
oligo #	Sequence
24HB-1	AAAACGAGAATTTAAAGTGCCGTTTTTAAGTAATTC	(SEQ ID NO: 7)
24HB-2	AAAAGAAATCGCCTGATAAATAAAGAATCTCTGGTTAACGTGTCT	(SEQ ID NO: 8)
24HB-3	AAAAGAGAAAATACTGAGCTACAGGCGAAAAGATTCTCTGGTTAACGTGTCT	(SEQ ID NO: 9)
24HB-4	AAAATATGCGCCGACATACT	(SEQ ID NO: 10)
24HB-5	AAACGAAGAGAAGTATATCCACCTCAAACATCAATCTCTGGTTAACGTGTCT	(SEQ ID NO: 11)
24HB-6	AAACGCATACGGTGTCTGGAAGTCAGGACTCTGGTTAACGTGTCT	(SEQ ID NO: 12)
24HB-7	AAACGTAAATTCTGGCTGTCTACCGCCATTTGTCG	(SEQ ID NO: 13)
24HB-8	AAAGCGCCCGCCAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 14)
24HB-9	AAAGGTGTCCATATAAGAACGACCGTACAGTAAATGAATT	(SEQ ID NO: 15)
24HB-10	AAATTAAGGAAGTTCGTTGCGGTCCACGTAGGAATCTCTGGTTAACGTGTCT	(SEQ ID NO: 16)
24HB-11	AACATCGCCATTAAAAGGGACACAGAGACCTTCAT	(SEQ ID NO: 17)
24HB-12	AACATTTACGAGCATACCATTACTTCAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 18)
24HB-13	AACCAAGTACCGCAATAGCCCGGAATAGTCCTCATTGAGGCACTCTGGTTAACGTGTCT	(SEQ ID NO: 19)
24HB-14	AACCCATACACTGAGTTTCGTGGCTCC	(SEQ ID NO: 20)
24HB-15	AACGAGTGCTGCTCTCATTACAAGCCTT	(SEQ ID NO: 21)
24HB-16	AACGGGTTCTGTCCATCACGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 22)
24HB-17	AACTGACGTATTAAACGGGGTCCTCCCTCTCTGGTTAACGTGTCT	(SEQ ID NO: 23)
24HB-18	AAGCCTGGGTGGTTGAACAACCTCTGGTTAACGTGTCT	(SEQ ID NO: 24)
24HB-19	AAGTATTTAGTTATAGCTTCTCTGGTTAACGTGTCT	(SEQ ID NO: 25)
24HB-20	AAGTGTAACAGGGCGTAATAAAAATACCCAGATGAATATGCGCGAACTG	(SEQ ID NO: 26)
24HB-21	AATAAAGAACGGATGAAAGGGAATCGCCGTTTTAG	(SEQ ID NO: 27)
24HB-22	AATAGAATATAATGCGTAGGAAGTACCACTGCTCCATGTTAC	(SEQ ID NO: 28)
24HB-23	AATCAAACAAAAAGATAACCTCGGAATAAGTAAGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 29)
24HB-24	ACAAACATACATAATCATAATAAGAAACACGAGCGCTCTGGTTAACGTGTCT	(SEQ ID NO: 30)
24HB-25	ACAACTAAACAGCTTGATACCCCCACGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 31)
24HB-26	ACACCGCGCTCAATCGTCTGACTCGTTACTCTGGTTAACGTGTCT	(SEQ ID NO: 32)
24HB-27	ACACTAAGGAACGGCCAGCCACTAAAGCTTGGATTCTCTGGTTAACGTGTCT	(SEQ ID NO: 33)
24HB-28	ACAGCTGGCATTAAAGACAGCTGCGAATTGGGCGC	(SEQ ID NO: 34)
24HB-29	ACCACATTGCGGAATCATATT	(SEQ ID NO: 35)
24HB-30	ACCACCATCAAAAATAATTCGAAAGGCTCTCTGGTTAACGTGTCT	(SEQ ID NO: 36)
24HB-31	ACCAGCGCACCATTCAATAGCAGGATTAGAACGAGGCGCAGA	(SEQ ID NO: 37)
24HB-32	ACCCCCACGATTAAACGCTCAAGCCAGCTGGAAGGCTCTGGTTAACGTGTCT	(SEQ ID NO: 38)
24HB-33	ACCGTTCATGTGTATACCAAATAAGAAACCCAAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 39)
24HB-34	ACGAGGCGGGGGTAATAGTAAAACAGTTCTCTGGTTAACGTGTCT	(SEQ ID NO: 40)
24HB-35	ACGTTGTAGCTGGCTCGCCTGAATTACCCTCTGGTTAACGTGTCT	(SEQ ID NO: 41)
24HB-36	ACTATCATGCAAAACATTTTCCTACTAAAGGCAAGGCAAAGA	(SEQ ID NO: 42)
24HB-37	AGAGCAATTCAACGCAGTTGGGTTATAT	(SEQ ID NO: 43)
24HB-38	AGATAGCAGCTAAATCGGTTGGGTAAAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 44)
24HB-39	AGATGATGGCAATTTATCAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 45)
24HB-40	AGATTAACAATCATTTAATATTGATTGTATCACCTCTCTGGTTAACGTGTCT	(SEQ ID NO: 46)
24HB-41	AGCATGTGACGCTGTTTTTCACCTGAACCACAATCCTCTGGTTAACGTGTCT	(SEQ ID NO: 47)
24HB-42	AGCCCCCGAATAAGACGAGAATACGTGA	(SEQ ID NO: 48)
24HB-43	AGCGGGCCTTTGACGATTCACCAGAAGAGTAGATTCTCTGGTTAACGTGTCT	(SEQ ID NO: 49)
24HB-44	AGGAATTTAGTAATTTTCAACAGACGTTTCAGGAG	(SEQ ID NO: 50)
24HB-45	AGGAGGCGCGATTATACCAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 51)
24HB-46	AGGGCGAGCACTAAGTACAGAGCCAGGGCTGCAAGGCGATTAAGGACCTGAAAGCG	(SEQ ID NO: 52)
24HB-47	AGGGCTTACCGGAAATCAATACTCTGGTTAACGTGTCT	(SEQ ID NO: 53)
24HB-48	AGGGTAGATATATTTTTCTTAATAGATTTATTAATCTCTGGTTAACGTGTCT	(SEQ ID NO: 54)
24HB-49	AGGTGAACGGTCGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 55)
24HB-50	AGTAAATTCTATCACTCTGGTTAACGTGTCT	(SEQ ID NO: 56)
24HB-51	AGTAGATTCGCAGTATGAAATACTCTGGTTAACGTGTCT	(SEQ ID NO: 57)
24HB-52	ATAAAGCAAAAGCCTTTAATGCTCTGGTTAACGTGTCT	(SEQ ID NO: 58)
24HB-53	ATAACATGTTTGAAGGCAGAGTCGGTGCCTTGCATGCCTGCA	(SEQ ID NO: 59)
24HB-54	ATAACCGCAACGGCGCCAGCTATTGCCCAGGAATTCTCTGGTTAACGTGTCT	(SEQ ID NO: 60)
24HB-55	ATAATCCTTTGTTAGGCAAAGAAGGTAA	(SEQ ID NO: 61)
24HB-56	ATACTTCTTAAATTCAGGCTGGAGAATATA	(SEQ ID NO: 62)
24HB-57	ATAGCAGATAAATAACAACGCTTACGCCAAAACGACGGCCAG	(SEQ ID NO: 63)
24HB-58	ATCAATTAGGGATAACAAACTAGAGGCGCTCAGCACTCTGGTTAACGTGTCT	(SEQ ID NO: 64)
24HB-59	ATCAGGTCCTCCGGCTTAGAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 65)
24HB-60	ATCATCATTTTAACCTCCAGCGTTCAGC	(SEQ ID NO: 66)
24HB-61	ATCATGGAAACCAAAATTCGTAAAACTCTCTGGTTAACGTGTCT	(SEQ ID NO: 67)
24HB-62	ATCATTTCCTTCCTGTTTGAGAGTCCTGATAATCGCGAACG	(SEQ ID NO: 68)
24HB-63	ATCGTAACCGTGCAACAACTAAAGGAATCCTCATAGAACCGC	(SEQ ID NO: 69)
24HB-64	ATGAAACCATCGAATTAGAGCCAGCTAGAAGGAGACTCCTCATAAG	(SEQ ID NO: 70)
24HB-65	ATGAACGGTAATCGCATTAAATTTTTGTCGCTTCT	(SEQ ID NO: 71)
24HB-66	ATGCCGGTTTAAATGTAATACTTTTGCGAAAATAA	(SEQ ID NO: 72)
24HB-67	ATGGTCAATTAAGACTCTGGTTAACGTGTCT	(SEQ ID NO: 73)
24HB-68	ATGGTTGGCTAGGGCCGTAAAAAAACCGTGGGCTTCTCTGGTTAACGTGTCT	(SEQ ID NO: 74)
24HB-69	ATTAATTTTCCCTTTTTAATGAAAAACACAAAAGGCTCTGGTTAACGTGTCT	(SEQ ID NO: 75)
24HB-70	ATTATACTACAGGAAAGGATTAAGCAAACGAGCCAGTAATAA	(SEQ ID NO: 76)
24HB-71	ATTATTAAGAATGGTATAAGTCTCATCGACAATAAA	(SEQ ID NO: 77)
24HB-72	ATTATTTTGAATACTTCGCTACAACATG	(SEQ ID NO: 78)
24HB-73	ATTCAAACAATATGATTCTCCACTCGTAATTTGAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 79)
24HB-74	ATTGAGTAACTATAGAACGCGTCAGGAAAAACAACAACATCA	(SEQ ID NO: 80)
24HB-75	ATTGCATAATCAGGAGGCTTTTAACCCTGTTTTTCCTCTGGTTAACGTGTCT	(SEQ ID NO: 81)
24HB-76	CAAATCACCATAGGGTGAAGCATAACGAACAAAAACGCAATAATAAGTTTAGC	(SEQ ID NO: 82)
24HB-77	CAACAGTTGCGGGATACCAACTTTAGCGT	(SEQ ID NO: 83)
24HB-78	CAACATCAGCTTTCCGGCACTAAATCAAGAATCGCTCTGGTTAACGTGTCT	(SEQ ID NO: 84)
24HB-79	CAACTTTCCCGATTCGAGAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 85)
24HB-80	CACAAACTGAGATTCTGGTTTCTCTGGTTAACGTGTCT	(SEQ ID NO: 86)
24HB-81	CACCACCAATCAGTTCACCGAGGTAAATAATGAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 87)
24HB-82	CACCACCGATAAGATCAACATATTTTGTAAAGTCACTCTGGTTAACGTGTCT	(SEQ ID NO: 88)
24HB-83	CACCCTCAGAGCCAATTCCACTGAATCGCGGAACGCTCTGGTTAACGTGTCT	(SEQ ID NO: 89)
24HB-84	CACTACGTGAGGCCAAACTATTCAATATGATTATCCTCTGGTTAACGTGTCT	(SEQ ID NO: 90)
24HB-85	CAGAAAACGAAAGAGATACATCATGATTACCGAAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 91)
24HB-86	CAGACGAACCAAAACAATAGG	(SEQ ID NO: 92)
24HB-87	CAGACTCATCTTTTCATAATCAAAATCGTTTGCC	(SEQ ID NO: 93)
24HB-88	CAGAGCCGCCACCCGGTAATATTAAGAACAGTTTGCTCTGGTTAACGTGTCT	(SEQ ID NO: 94)
24HB-89	CAGCCATTATCATAAAATTCTACGTGGCACAGACAGAATGGC	(SEQ ID NO: 95)
24HB-90	CAGTTACCACCCAGGATTAGTCAAGAACCAAGAGTCCAAATCCGCTGCG	(SEQ ID NO: 96)
24HB-91	CATATATAGAGGGTGCTTTCAGTTTGAGAGCACTACTCTGGTTAACGTGTCT	(SEQ ID NO: 97)
24HB-92	CATCAGTAAATAAAGTGTATCGGTATTA	(SEQ ID NO: 98)
24HB-93	CATTGACGTACCTTACTAAAGAAGACACGCTAATACTCTGGTTAACGTGTCT	(SEQ ID NO: 99)
24HB-94	CCAATCAAACAAGAGGAGAAGGAACCCTCTCTGGTTAACGTGTCT	(SEQ ID NO: 100)
24HB-95	CCACCAGCAGTCACACGACCAGCGTACTCTCTGGTTAACGTGTCT	(SEQ ID NO: 101)
24HB-96	CCACCCTGAAGTTTGACCATACTCTGGTTAACGTGTCT	(SEQ ID NO: 102)
24HB-97	CCCAAAAACTCGCGCAGAGGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 103)
24HB-98	CCCTCAACGGCCTTCTGTTTCCACAACAGGGTTGA	(SEQ ID NO: 104)
24HB-99	CCCTTTTAACATTACCAATAAGTGTAGAAATAATT	(SEQ ID NO: 105)
24HB-100	CCGGTTGCATAGCGAATTTCAACGGGAGATGGTTTCTCTGGTTAACGTGTCT	(SEQ ID NO: 106)
24HB-101	CCTCAAATTTTAATTCGAGCTCTCTGGTTAACGTGTCT	(SEQ ID NO: 107)
24HB-102	CCTCAGAATGGCTTAGAGCCACTCTGGTTAACGTGTCT	(SEQ ID NO: 108)
24HB-103	CCTGACTCAGAAGCTCATTTGACCGAGGAGTTACCCTCTGGTTAACGTGTCT	(SEQ ID NO: 109)
24HB-104	CCTGGCCGGGAAACCTGTCGTTACAGAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 110)
24HB-105	CCTTTAAAGTATTCAAACAACTCTGGTTAACGTGTCT	(SEQ ID NO: 111)
24HB-106	CGAACCTTCGGAACGAACGGTATCGGAACGAAAGGCTCTGGTTAACGTGTCT	(SEQ ID NO: 112)
24HB-107	CGACGGCGGATCCGTTCCCCAGAACCTCTGGTTAACGTGTCT	(SEQ ID NO: 113)
24HB-108	CGCAACTTCTAGAGAGGAAAAAGGGATTCTCTGGTTAACGTGTCT	(SEQ ID NO: 114)
24HB-109	CGCCACCGGCCGGACCAGTAGCCAAAGAGGGAAGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 115)
24HB-110	CGCTGAGTGGAAATACCTACAGCTAAACCTCTGGTTAACGTGTCT	(SEQ ID NO: 116)
24HB-111	CGGATATATTCAGTTTATTAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 117)
24HB-112	CGGCAAAATCCCTTCGTTAATCTCTGGTTAACGTGTCT	(SEQ ID NO: 118)
24HB-113	CGGTCAATCAAGAGGTGTACTTCAGAACCTCTGGTTAACGTGTCT	(SEQ ID NO: 119)
24HB-114	CGTAACCCGCCGCGCTTAATGCGCCGCT	(SEQ ID NO: 120)
24HB-115	CGTTTGCGTAGCGCTTTATCCAGAGCCTATCCCAACTCTGGTTAACGTGTCT	(SEQ ID NO: 121)
24HB-116	CTATTATACAGTGCCCAGAGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 122)
24HB-117	CTGAGTATAGCTGAGAGCGAGCGAACGTAGAGCCGCTCTGGTTAACGTGTCT	(SEQ ID NO: 123)
24HB-118	CTGGAGCTCTGAGAGCTGATGGATAACCATAAAAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 124)
24HB-119	CTTATCCTAATTTAATACCGAGCTATTACTCTGGTTAACGTGTCT	(SEQ ID NO: 125)
24HB-120	CTTATTATAGTTTGGTAGAAAACCCTCAGTTAGCG	(SEQ ID NO: 126)
24HB-121	CTTGCCTAATCAACCGGAATTCTCTGGTTAACGTGTCT	(SEQ ID NO: 127)
24HB-122	CTTTAATACAGTAAAACAAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 128)
24HB-123	CTTTGCCTAACAACCACGTTGATCATACTAGTAGT	(SEQ ID NO: 129)
24HB-124	GAAAAATTTGCAACGATCCCC	(SEQ ID NO: 130)
24HB-125	GAAACAGTCAAGAACAGTACCTTAACGTGAACGAACTCTGGTTAACGTGTCT	(SEQ ID NO: 131)
24HB-126	GAAATTATTCATTAGATTTTTCTCTGGTTAACGTGTCT	(SEQ ID NO: 132)
24HB-127	GAACAAGTGACGGGGAAGCGCGAAACAAGTTGTTCCTGGCTCCTCTGGTTAACGTGTCT	(SEQ ID NO: 133)
24HB-128	GAACGTGGGGAGCCGAAAGAG	(SEQ ID NO: 134)
24HB-129	GAACTGGTTCGCAAAGCATT	(SEQ ID NO: 135)
24HB-130	GAATCAAACCGGAACCGTATATTTAATTACGTCAACTCTGGTTAACGTGTCT	(SEQ ID NO: 136)
24HB-131	GAATCAGAACGTGGTAGAGCTAGTCCACTACCTTACTCTGGTTAACGTGTCT	(SEQ ID NO: 137)
24HB-132	GAATCCTAGAGGCATGTGTCGAAGCATAAAGTGTA	(SEQ ID NO: 138)
24HB-133	GAATTATAATCGTCCCGTGTGCCTTTACATTGAGGCTCTGGTTAACGTGTCT	(SEQ ID NO: 139)
24HB-134	GACAACAGGACTAATCCAGTCCTGAGAGATGCAGACTCTGGTTAACGTGTCT	(SEQ ID NO: 140)
24HB-135	GACGACGAGAACAAGCAAGCCGTCGAGATACGAGCCGGAAATCCG	(SEQ ID NO: 141)
24HB-136	GAGAATACTAAAGTCCCTCAGATAGCGTGAATCCCCTCTGGTTAACGTGTCT	(SEQ ID NO: 142)
24HB-137	GAGATGGAACAGTTAATGCCGTAACAAA	(SEQ ID NO: 143)
24HB-138	GAGGGAACTTGAGCTAAGAAC	(SEQ ID NO: 144)
24HB-139	GAGGGTAGAACGCGAGAAAACAGAAGAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 145)
24HB-140	GAGGTGATATTTACATTGGCAGAGCACGCTCTGGTTAACGTGTCT	(SEQ ID NO: 146)
24HB-141	GATAAAAGATCTACCGTCTGGTGCGGAAGTTATCTCTCTGGTTAACGTGTCT	(SEQ ID NO: 147)
24HB-142	GATAGGTCCGTCGGATATTCACTCTGGTTAACGTGTCT	(SEQ ID NO: 148)
24HB-143	GATTCCCGAAAATAAATAATACTCTGGTTAACGTGTCT	(SEQ ID NO: 149)
24HB-144	GATTTAGATTGTATAAAAAAACACCAGTGCAAGCCTAGCGAGTCTTTAC	(SEQ ID NO: 150)
24HB-145	GCAAACTCGATTGGCCTTGGTCATAAATGAACCAG	(SEQ ID NO: 151)
24HB-146	GCAAGCGCTCACTGCCCGCTTAGACTTTCTCTGGTTAACGTGTCT	(SEQ ID NO: 152)
24HB-147	GCAATAGCTATCTTAAGACTCCTCTGGTTAACGTGTCT	(SEQ ID NO: 153)
24HB-148	GCACCGTGGAACCGCAGTGCCTTGAGTATCTGAAACATGAAA	(SEQ ID NO: 154)
24HB-149	GCATTAGTCTTCTGACCTAAAAGAATCCCTCTGGTTAACGTGTCT	(SEQ ID NO: 155)
24HB-150	GCCCCAGACTCACATTAATTGTCCATTACTCTGGTTAACGTGTCT	(SEQ ID NO: 156)
24HB-151	GCCGGCGAGCGGGATTTTGACCTGCAACTATCAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 157)
24HB-152	GCGAAAGTGCAGGGTCAGCTTATAATACTTAAATCCTCTGGTTAACGTGTCT	(SEQ ID NO: 158)
24HB-153	GCGACATTCAACCGAGAGAGACTCTGGTTAACGTGTCT	(SEQ ID NO: 159)
24HB-154	GCGAGGCATATTTAAGGCGTTACCTTGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 160)
24HB-155	GCGGTCAAAGTTTTGGCCCACACACCAGCTCTGGTTAACGTGTCT	(SEQ ID NO: 161)
24HB-156	GCTAAAGGTGAATTATCACCGAGCGACACTCTGGTTAACGTGTCT	(SEQ ID NO: 162)
24HB-157	GCTGAAAAAATTAAGCCTCAGGAAAGGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 163)
24HB-158	GCTTTGAACCATCGGATAGTTCTTTAGGTAACATTCTCTGGTTAACGTGTCT	(SEQ ID NO: 164)
24HB-159	GGAACCGTGCCAAGGGGCCTCCAAGTTACAAAAAGGAAGATTAGGGCGAGCATTTT	(SEQ ID NO: 165)
24HB-160	GGAAGAAGTCATACTTTGCTCATCATTACCGCGCCACTTAA	(SEQ ID NO: 166)
24HB-161	GGAAGCCCGAGAATTGCCAGAATAGTAAACGGGCACTCTGGTTAACGTGTCT	(SEQ ID NO: 167)
24HB-162	GGAAGGGTGCTTTCAATGGATGGCGGTCAAACAGACTCTGGTTAACGTGTCT	(SEQ ID NO: 168)
24HB-163	GGCCGCTCGTCACCGTTTGCGCAGGGTGCGTTTAC	(SEQ ID NO: 169)
24HB-164	GGGCGATTTGGGGTTGGCTGATAGAACCCTTCTTTGGGTAACCCAGGCGCA	(SEQ ID NO: 170)
24HB-165	GGGTACCCGCCATTGTAAACGATGTACCCTCTGGTTAACGTGTCT	(SEQ ID NO: 171)
24HB-166	GGTATTCCATTTGGGATAGCACTCTGGTTAACGTGTCT	(SEQ ID NO: 172)
24HB-167	GGTCAGACCAACAGGTTTCATGCAACATCACAAGACTCTGGTTAACGTGTCT	(SEQ ID NO: 173)
24HB-168	GGTCGACGTTGGGAGTATAAGGAAAAGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 174)
24HB-169	GTAATGGATCTCCACGGTTTAAGTTAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 175)
24HB-170	GTTAGAACCTACCAAGTGCCACTCTGGTTAACGTGTCT	(SEQ ID NO: 176)
24HB-171	GTTGAGTAGTACAACGGAGATATCTTTGCTCTGGTTAACGTGTCT	(SEQ ID NO: 177)
24HB-172	GTTGGCAGAGTAGAAGAACTCACCGAGTCTCTGGTTAACGTGTCT	(SEQ ID NO: 178)
24HB-173	GTTTAGTTTCCTTAATCAACAATAGATAGGGACGAGCGGAGT	(SEQ ID NO: 179)
24HB-174	GTTTGATGGGTGCCAATTCCACTGTGTGAAATTGTTATGGGATT	(SEQ ID NO: 180)
24HB-175	TAACGATGAAAGGATCTGCCAGTAGCCAAGCTATTCTCTGGTTAACGTGTCT	(SEQ ID NO: 181)
24HB-176	TAAGAATTACCAGTAAATCAACTACAATGTTTTCATCGGCAT	(SEQ ID NO: 182)
24HB-177	TAAGCCCCATACATCTCTGGTTAACGTGTCT	(SEQ ID NO: 183)
24HB-178	TAAGTTTGTTTTAAATATGCATAATTGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 184)
24HB-179	TAATCAGAAGGCACCAACCTACTCTGGTTAACGTGTCT	(SEQ ID NO: 185)
24HB-180	TAATCATTGTGAATTATTAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 186)
24HB-181	TAATGCATGTAAATGACTACCCTCTGGTTAACGTGTCT	(SEQ ID NO: 187)
24HB-182	TACATAACGCCAAATTCACCGCTCTGGTTAACGTGTCT	(SEQ ID NO: 188)
24HB-183	TAGGCCGAGGTGCGCTGGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 189)
24HB-184	TATAACGAAGAAAGCCCTAAAGACTCCATCAACTTCTCTGGTTAACGTGTCT	(SEQ ID NO: 190)
24HB-185	TATATTTAAAGCGGCTCTGGTTAACGTGTCT	(SEQ ID NO: 191)
24HB-186	TATCCCATCCTAATTGACCCTGCAATGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 192)
24HB-187	TATCGCGTGCTTTAAATGTTTAGACTGGAACCGCC	(SEQ ID NO: 193)
24HB-188	TATGTGAAAGAAGAAAACAATAAATTGCTAAAACACTCTGGTTAACGTGTCT	(SEQ ID NO: 194)
24HB-189	TCAAAGCATTCATTCCAATACTCAACTAAGTTGCACTCTGGTTAACGTGTCT	(SEQ ID NO: 195)
24HB-190	TCAATAGGCTTTCGTTTTCACCTGTAGC	(SEQ ID NO: 196)
24HB-191	TCAATAGTGAATTTAGACAAAATTGAGCCACGGAACTCTGGTTAACGTGTCT	(SEQ ID NO: 197)
24HB-192	TCAGAGACAAATCCAATCGCAATCAAAACTCTGGTTAACGTGTCT	(SEQ ID NO: 198)
24HB-193	TCAGATAAAAATCAAACGTCACCA	(SEQ ID NO: 199)
24HB-194	TCATAGGAAACAAGGCTCATTTATTCCTCTGGTCACTCTGGTTAACGTGTCT	(SEQ ID NO: 200)
24HB-195	TCATTCCAACAGTTACCGGAACTCTGGTTAACGTGTCT	(SEQ ID NO: 201)
24HB-196	TCCAAATTACTAGACAACGCT	(SEQ ID NO: 202)
24HB-197	TCCTTTTAGAGCCGAGTCTCTACTAACGCCGAAATCTCTGGTTAACGTGTCT	(SEQ ID NO: 203)
24HB-198	TCTTTCCAGTTTCACGACAGTATCGGCCCCTGTTT	(SEQ ID NO: 204)
24HB-199	TCTTTCCTGAATCTGGTTTTGCCAAATCAACCCCTGCCTATTCCCGACT	(SEQ ID NO: 205)
24HB-200	TCTTTGATGAGGAAGCAAAGAACTCTGGTTAACGTGTCT	(SEQ ID NO: 206)
24HB-201	TGAACACAATATATCCGACAACGCCATTGAGCTCGAATTCGTA	(SEQ ID NO: 207)
24HB-202	TGAGCAAGTGAATAAAATAAGCGTCAAAATTGACGCTCTGGTTAACGTGTCT	(SEQ ID NO: 208)
24HB-203	TGAGGCTACAGCATGCCAACGCAGTGAGGAGCAACCTCTGGTTAACGTGTCT	(SEQ ID NO: 209)
24HB-204	TGCGATTAGTTTTAGAGGCTG	(SEQ ID NO: 210)
24HB-205	TGCTGAAGAACAATATTACCGTACGCCACTCTGGTTAACGTGTCT	(SEQ ID NO: 211)
24HB-206	TGTCCAGGTGCCGGTCATAGGCTGGTAGTTTTTACTCTGGTTAACGTGTCT	(SEQ ID NO: 212)
24HB-207	TGTTTAAAATAAACAATTGAGGGATGTGTTTTCCCAGTCACGGACAGAT	(SEQ ID NO: 213)
24HB-208	TTAATTATACCTTTTGTTTAGATTATTTAATTTGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 214)
24HB-209	TTAGACAAACACTCTTGTATCTAGCCCGGACGTTGCTCTGGTTAACGTGTCT	(SEQ ID NO: 215)
24HB-210	TTAGAGAAGGAGGTTAAAGCCCAGGTAGAAATCCTCTCTGGTTAACGTGTCT	(SEQ ID NO: 216)
24HB-211	TTAGCAACTCAGAGTTGATGACAGTCAGAGATAGGCTCTGGTTAACGTGTCT	(SEQ ID NO: 217)
24HB-212	TTAGCCGGCGGGGTATGGCTTCCACCACCTCTGGTTAACGTGTCT	(SEQ ID NO: 218)
24HB-213	TTCAGGTTTTTACATCGGGAGTGATGAACTCTGGTTAACGTGTCT	(SEQ ID NO: 219)
24HB-214	TTCATGACCGTTGTAGCAAATCTCTGGTTAACGTGTCT	(SEQ ID NO: 220)
24HB-215	TTCGACAGTGGGAAATTGACCATTAGCAAGGTGGC	(SEQ ID NO: 221)
24HB-216	TTCTGTATCATTTCATTGCTTGCACGTAAGTATTACTCTGGTTAACGTGTCT	(SEQ ID NO: 222)
24HB-217	TTCTGTATCCGCTCACTAATGAGGTAATGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 223)
24HB-218	TTGAAAAATAATCACAAATATTGAATAAAGCAAATCTCTGGTTAACGTGTCT	(SEQ ID NO: 224)
24HB-219	TTGCTGAAAATTCATAATTAACCTCTGGTTAACGTGTCT	(SEQ ID NO: 225)
24HB-220	TTGCTGATCGCACAATAGGTGAGAGTCTCTGGTTAACGTGTCT	(SEQ ID NO: 226)
24HB-221	TTTAAAATCAACATTAAATGTTAAATTACTCTGGTTAACGTGTCT	(SEQ ID NO: 227)
24HB-222	TTTGAATCATTTAATATTAGT	(SEQ ID NO: 228)
24HB-223	TTTGAGAATTTTTACCTTTATGAAACAATGTTAGCCTCTGGTTAACGTGTCT	(SEQ ID NO: 229)
24HB-224	TTTGCGGGCCGCCAAGTAAGCAAATCTAATAAATCCTCTGGTTAACGTGTCT	(SEQ ID NO: 230)
24HB-225	TTTTCACCGCGGGGACAACGCGTTGAAA	(SEQ ID NO: 231)
24HB-226	TTTTCATCTGTAGCGGTCATTCTCTGGTTAACGTGTCT	(SEQ ID NO: 232)
24HB-227	TTTTTAACATTGCCAACGCCAGAAGGAGAGTTGAACTCTGGTTAACGTGTCT	(SEQ ID NO: 233)

While the disclosure has been illustrated and described in detail in the figures and foregoing description, the same is to be considered as illustrative and not restrictive in character, it being understood that only selected embodiments have been shown and described, and that all changes, modifications and equivalents that come within the spirit of the disclosures described heretofore and/or defined by the following claims are desired to be protected, including any variations, uses, or adaptations that follow the general principles herein, and such departures as come within known or customary practice within the art to which the present disclosure pertains. In addition, all publications cited herein are indicative of the level of skill in the art, and are hereby incorporated by reference in their entirety as if each had been individually incorporated by reference and fully set forth.

Claims

1. A nucleic acid nanostructure, comprising: a DNA or RNA scaffold;at least one single stranded nucleic acid staple strand complementary to the scaffold;at least one cell penetrating peptide attached to the at least one staple strand; andat least one therapeutic substance attached to the at least one staple strand;wherein the at least one cell penetrating peptide is positively charged;wherein the nanostructure includes non-conjugated overhangs and cell penetrating peptide-conjugated overhangs;wherein the at least one therapeutic agent is selected from the group: siRNA, miRNA, shRNA, asRNA, mRNA, crRNA, tracrRNA, and a RNA vaccine.

2. The nanostructure of claim 1, wherein the at least one cell penetrating peptide and the at least one therapeutic substance are attached to the surface of the nanostructure.

3. The nanostructure of claim 1, wherein the at least one therapeutic substance is capable of gene silencing or gene editing.

4. The nanostructure of claim 1, wherein the nanostructure is capable of penetrating a cell using non-endocytic penetration.

5. The nanostructure of claim 1, wherein the nanostructure includes at least ten nonconjugated single-stranded overhangs for every cell penetrating peptide-conjugated single-stranded overhang.

6. The nanostructure of claim 1, wherein the at least one therapeutic compound is attached to one or more of the non-conjugated overhangs.

7. A method of treating a subject, the method comprising: providing a nucleic acid nanostructure having: a DNA or RNA scaffold;at least one single-stranded nucleic acid staple strand complementary to the scaffold;at least one positively charged cell penetrating peptide attached to the at least one staple strand; andat least one therapeutic substance attached to the at least one staple strand;wherein the nanostructure includes non-conjugated overhangs and cell penetrating peptide-conjugated overhangs;wherein the at least one therapeutic agent is selected from the group: siRNA, miRNA, shRNA, asRNA, mRNA, crRNA, tracrRNA, and a RNA vaccine; andadministering a therapeutically effective amount of the nucleic acid nanostructure to a subj ect.

8. The method of claim 7, wherein the method is a method for treating cancer.

9. The method of claim 7, wherein the at least one cell penetrating peptide and the at least one therapeutic substance are attached to the surface of the nanostructure.

10. The method of claim 7, wherein the at least one therapeutic substance is capable of gene silencing or gene editing.

11. The method of claim 7, wherein the nanostructure is capable of penetrating a cell using non-endocytic penetration.

12. The method of claim 7, wherein the method is a method for treating a genetically-related condition.

13. A nucleic acid nanostructure, comprising: a DNA or RNA scaffold;at least one single stranded nucleic acid staple strand complementary to the scaffold;at least one cell penetrating peptide attached to the at least one staple strand; andat least one therapeutic substance attached to the at least one staple strand;wherein the at least one cell penetrating peptide is positively charged;wherein the nanostructure includes non-conjugated overhangs and cell penetrating peptide-conjugated overhangs.

14. The nanostructure of claim 13, wherein the nanostructure includes at least ten non-conjugated single-stranded overhangs for every cell penetrating peptide-conjugated single-stranded overhang.

15. The nanostructure of claim 13, wherein the at least one therapeutic compound is attached to one or more of the non-conjugated overhangs.

16. The nanostructure of claim 13, wherein the at least one therapeutic substance is capable of gene silencing or gene editing.

17. The nanostructure of claim 13, wherein the nanostructure is capable of penetrating a cell using non-endocytic penetration.

18. A method of treating a subject, the method comprising: providing a nucleic acid nanostructure having:a DNA or RNA scaffold;at least one single-stranded nucleic acid staple strand complementary to the scaffold;at least one positively charged cell penetrating peptide attached to the at least one staple strand; andat least one therapeutic substance attached to the at least one staple strand;wherein the nanostructure includes non-conjugated overhangs and cell penetrating peptide-conjugated overhangs; andadministering a therapeutically effective amount of the nucleic acid nanostructure to a subj ect.

19. The method of claim 18, wherein the at least one therapeutic substance is capable of gene silencing or gene editing.

20. The method of claim 18, wherein the nanostructure is capable of penetrating a cell using non-endocytic penetration.