Antisense modulation of human mdm2 expression

Abstract
Compounds, compositions and methods are provided for inhibiting the expression of human mdm2. The compositions include antisense compounds targeted to nucleic acids encoding mdm2. Methods of using these oligonucleotides for inhibition of mdm2 expression and for treatment of diseases such as cancers associated with overexpression of mdm2 are provided.
Description




FIELD OF THE INVENTION




This invention relates to compositions and methods for modulating expression of the human mdm2 gene, a naturally present cellular gene implicated in abnormal cell proliferation and tumor formation. This invention is also directed to methods for inhibiting hyperproliferation of cells; these methods can be used diagnostically or therapeutically. Furthermore, this invention is directed to treatment of conditions associated with expression of the human mdm2 gene.




BACKGROUND OF THE INVENTION




Inactivation of tumor suppressor genes leads to unregulated cell proliferation and is a cause of tumorigenesis. In many tumors, the tumor suppressors, p53 or Rb (retinoblastoma) are inactivated. This can occur either by mutations within these genes, or by overexpression of the mdm2 gene. The mdm2 protein physically associates with both p53 and Rb, inhibiting their function. The levels of mdm2 are maintained through a feedback loop mechanism with p53. Overexpression of mdm2 effectively inactivates p53 and promotes cell proliferation.




The role of p53 in apoptosis and tumorigenesis is well-known in the art (see, in general, Canman, C. E. and Kastan, M. B.,


Adv. Pharmacol


., 1997, 41, 429-460). Mdm2 has been shown to regulate p53's apoptotic functions (Chen, J., et al.,


Mol. Cell Biol


., 1996, 16, 2445-2452; Haupt, Y., et al.,


EMBO J


., 1996, 15, 1596-1606). Overexpression of mdm2 protects tumor cells from p53-mediated apoptosis. Thus, mdm2 is an attractive target for cancers associated with altered p53 expression.




Amplification of the mdm2 gene is found in many human cancers, including soft tissue sarcomas, astrocytomas, glioblastomas, breast cancers and non-small cell lung carcinomas. In many blood cancers, overexpression of mdm2 can occur with a normal copy number. This has been attributed to enhanced translation of mdm2 mRNA, which is thought to be related to a distinct 5′-untranslated region (5′-UTR) which causes the transcript to be translated more efficiently than the normal mdm2 transcript. Landers et al.,


Cancer Res


. 57, 3562, (1997).




Several approaches have been used to disrupt the interaction between p53 and mdm2. Small peptide inhibitors, screened from a phage display library, have been shown in ELISA assays to disrupt this interaction [Bottger et al.,


J. Mol. Biol


., 269, 744 (1997)]. Microinjection of an anti-mdm2 antibody targeted to the p53-binding domain of mdm2 increased p53-dependent transcription [Blaydes et al.,


Oncogene


, 14, 1859 (1997)].




A vector-based antisense approach has been used to study the function of mdm2. Using a rhabdomyosarcoma model, Fiddler et al. [


Mol. Cell Biol


., 16, 5048 (1996)] demonstrated that amplified mdm2 inhibits the ability of MyoD to function as a transcription factor. Furthermore, expression of full-length antisense mdm2 from a cytomegalovirus promoter-containing vector restores muscle-specific gene expression.




Antisense oligonucleotides have also been useful in understanding the role of mdm2 in regulation of p53. An antisense oligonucleotide directed to the mdm2 start codon allowed cisplatin-induced p53-mediated apoptosis to occur in a cell line overexpressing mdm2 [Kondo et al.,


Oncogene


, 10, 2001 (1995)]. The same oligonucleotide was found to inhibit the expression of P-glycoprotein [Kondo et al.,


Br. J. Cancer


, 74, 1263 (1996)]. P-glycoprotein was shown to be induced by mdm2. Teoh et al [


Blood


, 90, 1982 (1997)] demonstrated that treatment with an identical mdm2 antisense oligonucleotide or a shorter version within the same region in a tumor cell line decreased DNA synthesis and cell viability and triggered apoptosis.




Chen et al. [


Proc. Natl. Acad. Sci. USA


, 95, 195 (1998); WO 99/10486] disclose antisense oligonucleotides targeted to the coding region of mdm2. A reduction in mdm2 RNA and protein levels was seen, and transcriptional activity from a p53-responsive promoter was increased after oligonucleotide treatment of JAR (choriocarcinoma) or SJSA (osteosarcoma) cells.




WO 93/20238 and WO 97/09343 disclose, in general, the use of antisense constructs, antisense oligonucleotides, ribozymes and triplex-forming oligonucleotides to detect or to inhibit expression of mdm2. EP 635068B1, issued Nov. 5, 1997, describes methods of treating in vitro neoplastic cells with an inhibitor of mdm2, and inhibitory compounds, including antisense oligonucleotides and triple-strand forming oligonucleotides.




There remains a long-felt need for improved compositions and methods for inhibiting mdm2 gene expression.




SUMMAY OF THE INVENTION




The present invention provides antisense compounds which are targeted to nucleic acids encoding human mdm2 and are capable of modulating, and preferably, inhibiting mdm2 expression. The present invention also provides chimeric compounds targeted to nucleic acids encoding human mdm2. The antisense compounds of the invention are believed to be useful both diagnostically and therapeutically, and are believed to be particularly useful in the methods of the present invention.




The present invention also comprises methods of inhibiting the expression of human mdm2, particularly the increased expression resulting from amplification of mdm2. These methods are believed to be useful both therapeutically and diagnostically as a consequence of the association between mdm2 expression and hyperproliferation. These methods are also useful as tools, for example, for detecting and determining the role of mdm2 expression in various cell functions and physiological processes and conditions and for diagnosing conditions associated with mdm2 expression.




The present invention also comprises methods of inhibiting hyperproliferation of cells using compounds of the invention. These methods are believed to be useful, for example, in diagnosing mdm2-associated cell hyperproliferation. Methods of treating abnormal proliferative conditions associated with mdm2 are also provided. These methods employ the antisense compounds of the invention. These methods are believed to be useful both therapeutically and as clinical research and diagnostic tools.




DETAILED DESCRIPTION OF THE INVENTION




Tumors often result from genetic changes in cellular regulatory genes. Among the most important of these are the tumor suppressor genes, of which p53 is the most widely studied. Approximately half of all human tumors have a mutation in the p53 gene. This mutation disrupts the ability of the p53 protein to bind to DNA and act as a transcription factor. Hyperproliferation of cells occurs as a result. Another mechanism by which p53 can be inactivated is through overexpression of mdm2, which regulates p53 activity in a feedback loop. The mdm2 protein binds to p53 in its DNA binding region, preventing its activity. Mdm2 is amplified in some human tumors, and this amplification is diagnostic of neoplasia or the potential therefor. Over one third of human sarcomas have elevated mdm2 sequences. Elevated expression may also be involved in other tumors including but not limited to those in which p53 inactivation has been implicated. These include colorectal carcinoma, lung cancer and chronic myelogenous leukemia.




Many abnormal proliferative conditions, particularly hyperproliferative conditions, are believed to be associated with increased mdm2 expression and are, therefore believed to be responsive to inhibition of mdm2 expression. Examples of these hyperproliferative conditions are cancers, psoriasis, blood vessel stenosis (e.g., restenosis or atherosclerosis), and fibrosis, e.g., of the lung or kidney. Increased levels of wild-type or mutated p53 have been found in some cancers (Nagashima, G., et al.,


Acta Neurochir


. (


Wein


), 1999, 141, 53-61; Fiedler, A., et al.,


Langenbecks Arch. Surg


., 1998, 383, 269-275). Increased levels of p53 is also associated with resistance of a cancer to a chemotherapeutic drug (Brown, R., et al.,


Int. J. Cancer


, 1993, 55, 678-684). These diseases or conditions may be amenable to treatment by induction of mdm2 expression.




The present invention employs antisense compounds, particularly oligonucleotides, for use in modulating the function of nucleic acid molecules encoding mdm2, ultimately modulating the amount of mdm2 produced. This is accomplished by providing oligonucleotides which specifically hybridize with nucleic acids, preferably mRNA, encoding mdm2.




This relationship between an antisense compound such as an oligonucleotide and its complementary nucleic acid target, to which it hybridizes, is commonly referred to as “antisense”. “Targeting” an oligonucleotide to a chosen nucleic acid target, in the context of this invention, is a multistep process. The process usually begins with identifying a nucleic acid sequence whose function is to be modulated. This may be, as examples, a cellular gene (or mRNA made from the gene) whose expression is associated with a particular disease state, or a foreign nucleic acid from an infectious agent. In the present invention, the target is a nucleic acid encoding mdm2; in other words, a mdm2 gene or RNA expressed from a mdm2 gene. mdm2 mRNA is presently the preferred target. The targeting process also includes determination of a site or sites within the nucleic acid sequence for the antisense interaction to occur such that modulation of gene expression will result.




In accordance with this invention, persons of ordinary skill in the art will understand that messenger RNA includes not only the information to encode a protein using the three letter genetic code, but also associated ribonucleotides which form a region known to such persons as the 5′-untranslated region, the 3′-untranslated region, the 5′ cap region and intron/exon junction ribonucleotides. Thus, oligonucleotides may be formulated in accordance with this invention which are targeted wholly or in part to these associated ribonucleotides as well as to the informational ribonucleotides. The oligonucleotide may therefore be specifically hybridizable with a transcription initiation site region, a translation initiation codon region, a 5′ cap region, an intron/exon junction, coding sequences, a translation termination codon region or sequences in the 5′- or 3′-untranslated region. Since, as is known in the art, the translation initiation codon is typically 5′-AUG (in transcribed mRNA molecules; 5′-ATG in the corresponding DNA molecule), the translation initiation codon is also referred to as the “AUG codon,” the “start codon” or the “AUG start codon.” A minority of genes have a translation initiation codon having the RNA sequence 5′-GUG, 5′-UUG or 5′-CUG, and 5′-AUA, 5′-ACG and 5′-CUG have been shown to function in vivo. Thus, the terms “translation initiation codon” and “start codon” can encompass many codon sequences, even though the initiator amino acid in each instance is typically methionine (in eukaryotes) or formylmethionine (prokaryotes). It is also known in the art that eukaryotic and prokaryotic genes may have two or more alternative start codons, any one of which may be preferentially utilized for translation initiation in a particular cell type or tissue, or under a particular set of conditions. In the context of the invention, “start codon” and “translation initiation codon” refer to the codon or codons that are used in vivo to initiate translation of an mRNA molecule transcribed from a gene encoding mdm2, regardless of the sequence(s) of such codons. It is also known in the art that a translation termination codon (or “stop codon”) of a gene may have one of three sequences, i.e., 5′-UAA, 5′-UAG and 5′-UGA (the corresponding DNA sequences are 5′-TAA, 5′-TAG and 5′-TGA, respectively). The terms “start codon region” and “translation initiation codon region” refer to a portion of such an mRNA or gene that encompasses from about 25 to about 50 contiguous nucleotides in either direction (i.e., 5′ or 3′) from a translation initiation codon. This region is a preferred target region. Similarly, the terms “stop codon region” and “translation termination codon region” refer to a portion of such an mRNA or gene that encompasses from about 25 to about 50 contiguous nucleotides in either direction (i.e., 5′ or 3′) from a translation termination codon. This region is a preferred target region. The open reading frame (ORF) or “coding region,” which is known in the art to refer to the region between the translation initiation codon and the translation termination codon, is also a region which may be targeted effectively. Other preferred target regions include the 5′ untranslated region (5′ UTR), known in the art to refer to the portion of an mRNA in the 5′ direction from the translation initiation codon, and thus including nucleotides between the 5′ cap site and the translation initiation codon of an mRNA or corresponding nucleotides on the gene) and the 3′ untranslated region (3′ UTR), known in the art to refer to the portion of an mRNA in the 3′ direction from the translation termination codon, and thus including nucleotides between the translation termination codon and 3′ end of an mRNA or corresponding nucleotides on the gene). mdm2 is believed to have alternative transcripts which differ in their 5′-UTR regions. The S-mdm2 transcript class is translated approximately 8-fold more efficiently than the L-mdm2 transcripts produced by the constitutive promoter. Landers et al.,


Cancer Res


., 57, 3562 (1997). Accordingly, both the 5′-UTR of the S-mdm transcript and the 5′-UTR of the L-mdm2 transcript are preferred target regions, with the S-mdm2 5′-UTR being more preferred. mRNA splice sites may also be preferred target regions, and are particularly useful in situations where aberrant splicing is implicated in disease, or where an overproduction of a particular mRNA splice product is implicated in disease. Aberrant fusion junctions due to rearrangements or deletions may also be preferred targets.




Once the target site or sites have been identified, oligonucleotides are chosen which are sufficiently complementary to the target, i.e., hybridize sufficiently well and with sufficient specificity, to give the desired modulation.




“Hybridization”, in the context of this invention, means hydrogen bonding, also known as Watson-Crick base pairing, between complementary bases, usually on opposite nucleic acid strands or two regions of a nucleic acid strand. Guanine and cytosine are examples of complementary bases which are known to form three hydrogen bonds between them. Adenine and thymine are examples of complementary bases which form two hydrogen bonds between them.




“Specifically hybridizable” and “complementary” are terms which are used to indicate a sufficient degree of complementarity such that stable and specific binding occurs between the DNA or RNA target and the oligonucleotide.




It is understood that an oligonucleotide need not be 100% complementary to its target nucleic acid sequence to be specifically hybridizable. An oligonucleotide is specifically hybridizable when binding of the oligonucleotide to the target interferes with the normal function of the target molecule to cause a loss of utility, and there is a sufficient degree of complementarity to avoid non-specific binding of the oligonucleotide to non-target sequences under conditions in which specific binding is desired, i.e., under physiological conditions in the case of in vivo assays or therapeutic treatment and, in the case of in vitro assays, under conditions in which the assays are conducted.




Hybridization of antisense oligonucleotides with mRNA interferes with one or more of the normal functions of mRNA. The functions of mRNA to be interfered with include all vital functions such as, for example, translocation of the RNA to the site of protein translation, translation of protein from the RNA, splicing of the RNA to yield one or more mRNA species, and catalytic activity which may be engaged in by the RNA.




The overall effect of interference with mRNA function is modulation of mdm2 expression. In the context of this invention “modulation” means either inhibition or stimulation; i.e., either a decrease or increase in expression. This modulation can be measured in ways which are routine in the art, for example by Northern blot assay of mRNA expression as taught in the examples of the instant application or by Western blot or ELISA assay of protein expression, or by an immunoprecipitation assay of protein expression, as taught in the examples of the instant application. Effects on cell proliferation or tumor cell growth can also be measured, as taught in the examples of the instant application.




The antisense compounds of this invention can be used in diagnostics, therapeutics, prophylaxis, and as research reagents and in kits. Since these compounds hybridize to nucleic acids encoding mdm2, sandwich, calorimetric and other assays can easily be constructed to exploit this fact. Furthermore, since the antisense compounds of this invention hybridize specifically to nucleic acids encoding particular isozymes of mdm2, such assays can be devised for screening of cells and tissues for particular mdm2 isozymes. Such assays can be utilized for diagnosis of diseases associated with various mdm2 forms. Provision of means for detecting hybridization of oligonucleotide with a mdm2 gene or mRNA can routinely be accomplished. Such provision may include enzyme conjugation, radiolabelling or any other suitable detection systems. Kits for detecting the presence or absence of mdm2 may also be prepared.




The present invention is also suitable for diagnosing abnormal proliferative states in tissue or other samples from patients suspected of having a hyperproliferative disease such as cancer or psoriasis. The ability of the oligonucleotides of the present invention to inhibit cell proliferation may be employed to diagnose such states. A number of assays may be formulated employing the present invention, which assays will commonly comprise contacting a tissue sample with an antisense compound of the invention under conditions selected to permit detection and, usually, quantitation of such inhibition. In the context of this invention, to “contact” tissues or cells with an antisense compound means to add the compound(s), usually in a liquid carrier, to a cell suspension or tissue sample, either in vitro or ex vivo, or to administer the antisense compound(s) to cells or tissues within an animal. Similarly, the present invention can be used to distinguish mdm2-associated tumors, particularly tumors associated with mdm2α, from tumors having other etiologies, in order that an efficacious treatment regime can be designed.




The antisense compounds of this invention may also be used for research purposes. Thus, the specific hybridization exhibited by oligonucleotides may be used for assays, purifications, cellular product preparations and in other methodologies which may be appreciated by persons of ordinary skill in the art.




In the context of this invention, the term “oligonucleotide” refers to an oligomer or polymer of ribonucleic acid or deoxyribonucleic acid. This term includes oligonucleotides composed of naturally-occurring nucleobases, sugars and covalent intersugar (backbone) linkages as well as oligonucleotides having non-naturally-occurring portions which function similarly. Such modified or substituted oligonucleotides are often preferred over native forms because of desirable properties such as, for example, enhanced cellular uptake, enhanced binding to target and increased stability in the presence of nucleases.




The antisense compounds in accordance with this invention preferably comprise from about 5 to about 50 nucleobases. Particularly preferred are antisense oligonucleotides comprising from about 8 to about 30 linked nucleobases (i.e. from about 8 to about 30 nucleosides). As is known in the art, a nucleoside is a base-sugar combination. The base portion of the nucleoside is normally a heterocyclic base. The two most common classes of such heterocyclic bases are the purines and the pyrimidines. Nucleotides are nucleosides that further include a phosphate group covalently linked to the sugar portion of the nucleoside. For those nucleosides that include a pentofuranosyl sugar, the phosphate group can be linked to either the 2′, 3′ or 5′ hydroxyl moiety of the sugar. In forming oligonucleotides, the phosphate groups covalently link adjacent nucleosides to one another to form a linear polymeric compound. In turn, the respective ends of this linear polymeric structure can be further joined to form a circular structure, however, open linear structures are generally preferred. Within the oligonucleotide structure, the phosphate groups are commonly referred to as forming the internucleoside backbone of the oligonucleotide. The normal linkage or backbone of RNA and DNA is a 3′ to 5′ phosphodiester linkage.




Specific examples of some preferred modified oligonucleotides envisioned for this invention include those containing phosphorothioates, phosphotriesters, methyl phosphonates, short chain alkyl or cycloalkyl intersugar linkages or short chain heteroatomic or heterocyclic intersugar linkages. Most preferred are oligonucleotides with phosphorothioates (usually abbreviated in the art as P═S) and those with CH


2


—NH—O—CH


2


, CH


2


—N(CH


3


)—O—CH


2


[known as a methylene(methylimino) or MMI backbone], CH


2


—O—N(CH


3


)—CH


2


, CH


2


—N(CH


3


)—N(CH


3


)—CH


2


and O—N(CH


3


)—CH


2


—CH


2


backbones, wherein the native phosphodiester (usually abbreviated in the art as P═O) backbone is represented as O—P—O—CH


2


). Also preferred are oligonucleotides having morpholino backbone structures (Summerton and Weller, U.S. Pat. No. 5,034,506). Further preferred are oligonucleotides with NR—C(*)—CH


2


—CH


2


, CH


2


—NR—C(*)—CH


2


, CH


2


—CH


2


—NR—C(*), C(*)—NR—CH


2


—CH


2


and CH


2


—C(*)—NR—CH


2


backbones, wherein “*” represents O or S (known as amide backbones; DeMesmaeker et al., WO 92/20823, published Nov. 26, 1992). In other preferred embodiments, such as the peptide nucleic acid (PNA) backbone, the phosphodiester backbone of the oligonucleotide is replaced with a polyamide backbone, the nucleobases being bound directly or indirectly to the aza nitrogen atoms of the polyamide backbone (Nielsen et al.,


Science


, 254, 1497 (1991); U.S. Pat. No. 5,539,082). Other preferred modified oligonucleotides may contain one or more substituted sugar moieties comprising one of the following at the 2′ position: OH, SH, SCH


3


, F, OCN, OCH


3


OCH


3


, OCH


3


O(CH


2


)


n


CH


3


, O(CH


2


)


n


NH


2


or O(CH


2


)


n


CH


3


where n is from 1 to about 10; C


1


to C


10


lower alkyl, alkoxyalkoxy, substituted lower alkyl, alkaryl or aralkyl; Cl; Br; CN; CF


3


; OCF


3


; O—, S—, or N-alkyl; O—, S—, or N-alkenyl; SOCH


3


; SO


2


CH


3


; ONO


2


; NO


2


; N


3


; NH


2


; heterocycloalkyl; heterocycloalkaryl; aminoalkylamino; polyalkylamino; substituted silyl; an RNA cleaving group; a reporter group; an intercalator; a group for improving the pharmacokinetic properties of an oligonucleotide; or a group for improving the pharmacodynamic properties of an oligonucleotide and other substituents having similar properties. A preferred modification includes 2′-O-methoxyethyl [which can be written as 2′-O—CH


2


CH


2


OCH


3


, and is also known in the art as 2′-O- (2-methoxyethyl) or 2′-methoxyethoxy] [Martin et al.,


Helv. Chim. Acta


, 78, 486 (1995)]. Other preferred modifications include 2′-methoxy (2′-O—CH


3


), 2′-propoxy (2′-OCH


2


CH


2


CH


3


), 2′-aminopropoxy (2′-OCH


2


CH


2


CH


2


NH


2


) and 2′-fluoro (2′-F). A further preferred modification includes 2′-dimethylaminooxyethoxy, i.e., a O(CH


2


)


2


ON(CH


3


)


2


group, also known as 2′-DMAOE, as described in examples hereinbelow. Similar modifications may also be made at other positions on the oligonucleotide, particularly the 3′ position of the sugar on the 3′ terminal nucleotide and the 5′ position of the 5′ terminal nucleotide. Oligonucleotides may also have sugar mimetics such as cyclobutyls in place of the pentofuranosyl group.




The oligonucleotides of the invention may additionally or alternatively include nucleobase modifications or substitutions. As used herein, “unmodified” or “natural” nucleobases include adenine (A), guanine (G), thymine (T), cytosine (C) and uracil (U). Modified nucleobases include nucleobases found only infrequently or transiently in natural nucleic acids, e.g., hypoxanthine, 6-methyladenine and 5-methylcytosine, as well as synthetic nucleobases, e.g., 5-bromouracil, 5-hydroxymethyluracil, 8-azaguanine, 7-deazaguanine, N


6


(6-aminohexyl)adenine and 2,6-diaminopurine [Kornberg, A., DNA Replication, 1974, W.H. Freeman & Co., San Francisco, 1974, pp. 75-77; Gebeyehu, G., et al.,


Nucleic Acids Res


., 15, 4513 (1987)]. 5-methylcytosine (5-me-C) is presently a preferred nucleobase, particularly in combination with 2′-O-methoxyethyl modifications.




Another preferred additional or alternative modification of the oligonucleotides of the invention involves chemically linking to the oligonucleotide one or more lipophilic moieties which enhance the cellular uptake of the oligonucleotide. Such lipophilic moieties may be linked to an oligonucleotide at several different positions on the oligonucleotide. Some preferred positions include the 3′ position of the sugar of the 3′ terminal nucleotide, the 5′ position of the sugar of the 5′ terminal nucleotide, and the 2′ position of the sugar of any nucleotide. The N


6


position of a purine nucleobase may also be utilized to link a lipophilic moiety to an oligonucleotide of the invention (Gebeyehu, G., et al.,


Nucleic Acids Res


., 1987, 15, 4513). Such lipophilic moieties include but are not limited to a cholesteryl moiety [Letsinger et al.,


Proc. Natl. Acad. Sci. USA


., 86, 6553 (1989)], cholic acid [Manoharan et al.,


Bioorg. Med. Chem. Let


., 4, 1053 (1994)], a thioether, e.g., hexyl-S-tritylthiol [Manoharan et al.,


Ann. N.Y. Acad. Sci


., 660, 306 (1992); Manoharan et al.,


Bioorg. Med. Chem. Let


., 3, 2765 (1993)], a thiocholesterol [Oberhauser et al.,


Nucl. Acids Res


., 20, 533 (1992)], an aliphatic chain, e.g., dodecandiol or undecyl residues [Saison-Behmoaras et al.,


EMBO J


., 10, 111 (1991); Kabanov et al.,


FEBS Lett


., 259, 327 (1990); Svinarchuk et al.,


Biochimie


., 75, 49(1993)], a phospholipid, e.g., di-hexadecyl-rac-glycerol or triethylammonium 1,2-di-O-hexadecyl-rac-glycero-3-H-phosphonate [Manoharan et al.,


Tetrahedron Lett


., 36, 3651 (1995); Shea et al.,


Nucl. Acids Res


., 18, 3777 (1990)], a polyamine or a polyethylene glycol chain [Manoharan et al.,


Nucleosides


&


Nucleotides


, 14, 969 (1995)], or adamantane acetic acid [Manoharan et al.,


Tetrahedron Lett


., 36, 3651 (1995)], a palmityl moiety [Mishra et al.,


Biochim. Biophys. Acta


, 1264, 229 (1995)], or an octadecylamine or hexylamino-carbonyl-oxycholesterol moiety [Crooke et al.,


J. Pharmacol. Exp. Ther


., 277, 923 (1996)]. Oligonucleotides comprising lipophilic moieties, and methods for preparing such oligonucleotides, as disclosed in U.S. Pat. Nos. 5,138,045, 5,218,105 and 5,459,255, the contents of which are hereby incorporated by reference.




The present invention also includes oligonucleotides which are chimeric oligonucleotides. “Chimeric” oligonucleotides or “chimeras,” in the context of this invention, are oligonucleotides which contain two or more chemically distinct regions, each made up of at least one nucleotide. These oligonucleotides typically contain at least one region wherein the oligonucleotide is modified so as to confer upon the oligonucleotide increased resistance to nuclease degradation, increased cellular uptake, and/or increased binding affinity for the target nucleic acid. An additional region of the oligonucleotide may serve as a substrate for enzymes capable of cleaving RNA:DNA or RNA:RNA hybrids. By way of example, RNase H is a cellular endonuclease which cleaves the RNA strand of an RNA:DNA duplex. Activation of RNase H, therefore, results in cleavage of the RNA target, thereby greatly enhancing the efficiency of antisense inhibition of gene expression. Cleavage of the RNA target can be routinely detected by gel electrophoresis and, if necessary, associated nucleic acid hybridization techniques known in the art. This RNAse H-mediated cleavage of the RNA target is distinct from the use of ribozymes to cleave nucleic acids. Ribozymes are not comprehended by the present invention.




Examples of chimeric oligonucleotides include but are not limited to “gapmers,” in which three distinct regions are present, normally with a central region flanked by two regions which are chemically equivalent to each other but distinct from the gap. A preferred example of a gapmer is an oligonucleotide in which a central portion (the “gap”) of the oligonucleotide serves as a substrate for RNase H and is preferably composed of 2′-deoxynucleotides, while the flanking portions (the 5′ and 3′ “wings”) are modified to have greater affinity for the target RNA molecule but are unable to support nuclease activity (e.g., 2′-fluoro- or 2′-O-methoxyethyl-substituted). Other chimeras include “wingmers,” also known in the art as “hemimers,” that is, oligonucleotides with two distinct regions. In a preferred example of a wingmer, the 5′ portion of the oligonucleotide serves as a substrate for RNase H and is preferably composed of 2′-deoxynucleotides, whereas the 3′ portion is modified in such a fashion so as to have greater affinity for the target RNA molecule but is unable to support nuclease activity (e.g., 2′-fluoro- or 2′-O-methoxyethyl-substituted), or vice-versa. In one embodiment, the oligonucleotides of the present invention contain a 2′-O-methoxyethyl (2′-O—CH


2


CH


2


OCH


3


) modification on the sugar moiety of at least one nucleotide. This modification has been shown to increase both affinity of the oligonucleotide for its target and nuclease resistance of the oligonucleotide. According to the invention, one, a plurality, or all of the nucleotide subunits of the oligonucleotides of the invention may bear a 2′-O-methoxyethyl (—O—CH


2


CH


2


OCH


3


) modification. Oligonucleotides comprising a plurality of nucleotide subunits having a 2′-O-methoxyethyl modification can have such a modification on any of the nucleotide subunits within the oligonucleotide, and may be chimeric oligonucleotides. Aside from or in addition to 2′-O-methoxyethyl modifications, oligonucleotides containing other modifications which enhance antisense efficacy, potency or target affinity are also preferred. Chimeric oligonucleotides comprising one or more such modifications are presently preferred. Through use of such modifications, active oligonucleotides have been identified which are shorter than conventional “first generation” oligonucleotides active against mdm2. Oligonucleotides in accordance with this invention are from 5 to 50 nucleotides in length, preferably from about 8 to about 30. In the context of this invention it is understood that this encompasses non-naturally occurring oligomers as hereinbefore described, having from 5 to 50 monomers, preferably from about 8 to about 30.




The oligonucleotides used in accordance with this invention may be conveniently and routinely made through the well-known technique of solid phase synthesis. Equipment for such synthesis is sold by several vendors including Applied Biosystems. Any other means for such synthesis may also be employed; the actual synthesis of the oligonucleotides is well within the talents of the routineer. It is well known to use similar techniques to prepare oligonucleotides such as the phosphorothioates and 2′-alkoxy or 2′-alkoxyalkoxy derivatives, including 2′-O-methoxyethyl oligonucleotides [Martin, P.,


Helv. Chim. Acta


, 78, 486 (1995)]. It is also well known to use similar techniques and commercially available modified amidites and controlled-pore glass (CPG) products such as biotin, fluorescein, acridine or psoralen-modified amidites and/or CPG (available from Glen Research, Sterling Va.) to synthesize fluorescently labeled, biotinylated or other conjugated oligonucleotides.




The antisense compounds of the present invention include bioequivalent compounds, including pharmaceutically acceptable salts and prodrugs. This is intended to encompass any pharmaceutically acceptable salts, esters, or salts of such esters, or any other compound which, upon administration to an animal including a human, is capable of providing (directly or indirectly) the biologically active metabolite or residue thereof. Accordingly, for example, the disclosure is also drawn to pharmaceutically acceptable salts of the nucleic acids of the invention and prodrugs of such nucleic acids.




Pharmaceutically acceptable “salts” are physiologically and pharmaceutically acceptable salts of the nucleic acids of the invention: i.e., salts that retain the desired biological activity of the parent compound and do not impart undesired toxicological effects thereto [see, for example, Berge et al., “Pharmaceutical Salts,”


J. of Pharma Sci


., 66:1 (1977)].




For oligonucleotides, examples of pharmaceutically acceptable salts include but are not limited to (a) salts formed with cations such as sodium, potassium, ammonium, magnesium, calcium, polyamines such as spermine and spermidine, etc.; (b) acid addition salts formed with inorganic acids, for example hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid and the like; © salts formed with organic acids such as, for example, acetic acid, oxalic acid, tartaric acid, succinic acid, maleic acid, fumaric acid, gluconic acid, citric acid, malic acid, ascorbic acid, benzoic acid, tannic acid, palmitic acid, alginic acid, polyglutamic acid, naphthalenesulfonic acid, methanesulfonic acid, p-toluenesulfonic acid, naphthalenedisulfonic acid, polygalacturonic acid, and the like; and (d) salts formed from elemental anions such as chlorine, bromine, and iodine.




The oligonucleotides of the invention may additionally or alternatively be prepared to be delivered in a “prodrug” form. The term “prodrug” indicates a therapeutic agent that is prepared in an inactive form that is converted to an active form (i.e., drug) within the body or cells thereof by the action of endogenous enzymes or other chemicals and/or conditions. In particular, prodrug versions of the oligonucleotides of the invention are prepared as SATE [(S-acetyl-2-thioethyl) phosphate] derivatives according to the methods disclosed in WO 93/24510 to Gosselin et al., published Dec. 9, 1993.




For therapeutic or prophylactic treatment, oligonucleotides are administered in accordance with this invention. Oligonucleotide compounds of the invention may be formulated in a pharmaceutical composition, which may include pharmaceutically acceptable carriers, thickeners, diluents, buffers, preservatives, surface active agents, neutral or cationic lipids, lipid complexes, liposomes, penetration enhancers, carrier compounds and other pharmaceutically acceptable carriers or excipients and the like in addition to the oligonucleotide. Such compositions and formulations are comprehended by the present invention.




Pharmaceutical compositions comprising the oligonucleotides of the present invention may include penetration enhancers in order to enhance the alimentary delivery of the oligonucleotides. Penetration enhancers may be classified as belonging to one of five broad categories, i.e., fatty acids, bile salts, chelating agents, surfactants and non-surfactants (Lee et al.,


Critical Reviews in Therapeutic Drug Carrier Systems


, 1991, 8:91-192; Muranishi,


Critical Reviews in Therapeutic Drug Carrier Systems


, 1990, 7:1). One or more penetration enhancers from one or more of these broad categories may be included. Compositions comprising oligonucleotides and penetration enhancers are disclosed in co-pending U.S. patent application Ser. No. 08/886,829 to Teng et al., filed Jul. 1, 1997, which is herein incorporated by reference in its entirety.




The compositions of the present invention may additionally contain other adjunct components conventionally found in pharmaceutical compositions, at their art-established usage levels. Thus, for example, the compositions may contain additional compatible pharmaceutically-active materials such as, e.g., antipruritics, astringents, local anesthetics or anti-inflammatory agents, or may contain additional materials useful in physically formulating various dosage forms of the composition of present invention, such as dyes, flavoring agents, preservatives, antioxidants, opacifiers, thickening agents and stabilizers. However, such materials, when added, should not unduly interfere with the biological activities of the components of the compositions of the invention.




Regardless of the method by which the oligonucleotides of the invention are introduced into a patient, colloidal dispersion systems may be used as delivery vehicles to enhance the in vivo stability of the oligonucleotides and/or to target the oligonucleotides to a particular organ, tissue or cell type. Colloidal dispersion systems include, but are not limited to, macromolecule complexes, nanocapsules, microspheres, beads and lipid-based systems including oil-in-water emulsions, micelles, mixed micelles, liposomes and lipid:oligonucleotide complexes of uncharacterized structure. A preferred colloidal dispersion system is a plurality of liposomes. Liposomes are microscopic spheres having an aqueous core surrounded by one or more outer layers made up of lipids arranged in a bilayer configuration [see, generally, Chonn et al.,


Current Op. Biotech


., 6, 698 (1995)]. Liposomal antisense compositions are prepared according to the disclosure of co-pending U.S. patent application Ser. No. 08/961,469 to Hardee et al., filed Oct. 31, 1997, herein incorporated by reference in its entirety.




The pharmaceutical compositions of the present invention may be administered in a number of ways depending upon whether local or systemic treatment is desired and upon the area to be treated. Administration may be topical (including ophthalmic, vaginal, rectal, intranasal, epidermal and transdermal), oral or parenteral. Parenteral administration includes intravenous drip, subcutaneous, intraperitoneal or intramuscular injection, pulmonary administration, e.g., by inhalation or insufflation, or intracranial, e.g., intrathecal or intraventricular, administration. Oligonucleotides with at least one 2′-O-methoxyethyl modification are believed to be particularly useful for oral administration. Modes of administering oligonucleotides are disclosed in co-pending U.S. patent application Ser. No. 08/961,469 to Hardee et al., filed Oct. 31, 1997, herein incorporated by reference in its entirety.




Formulations for topical administration may include transdermal patches, ointments, lotions, creams, gels, drops, suppositories, sprays, liquids and powders. Conventional pharmaceutical carriers, aqueous, powder or oily bases, thickeners and the like may be necessary or desirable. Coated condoms, gloves and the like may also be useful.




Compositions for oral administration include powders or granules, suspensions or solutions in water or non-aqueous media, capsules, sachets or tablets. Thickeners, flavoring agents, diluents, emulsifiers, dispersing aids or binders may be desirable.




Compositions for parenteral administration may include sterile aqueous solutions which may also contain buffers, diluents and other suitable additives. In some cases it may be more effective to treat a patient with an oligonucleotide of the invention in conjunction with other traditional therapeutic modalities in order to increase the efficacy of a treatment regimen. In the context of the invention, the term “treatment regimen” is meant to encompass therapeutic, palliative and prophylactic modalities. For example, a patient may be treated with conventional chemotherapeutic agents, particularly those used for tumor and cancer treatment. Examples of such chemotherapeutic agents include but are not limited to daunorubicin, daunomycin, dactinomycin, doxorubicin, epirubicin, idarubicin, esorubicin, bleomycin, mafosfamide, ifosfamide, cytosine arabinoside, bis-chloroethylnitrosurea, busulfan, mitomycin C, actinomycin D, mithramycin, prednisone, hydroxyprogesterone, testosterone, tamoxifen, dacarbazine, procarbazine, hexamethylmelamine, pentamethylmelamine, mitoxantrone, amsacrine, chlorambucil, methylcyclohexylnitrosurea, nitrogen mustards, melphalan, cyclophosphamide, 6-mercaptopurine, 6-thioguanine, cytarabine (CA), 5-azacytidine, hydroxyurea, deoxycoformycin, 4-hydroxyperoxycyclophosphoramide, 5-fluorouracil (5-FU), 5-fluorodeoxyuridine (5-FUdR), methotrexate (MTX), colchicine,taxol,vincristine,vinblastine,etoposide, trimetrexate, teniposide, cisplatin and diethylstilbestrol (DES). See, generally,


The Merck Manual of Diagnosis and Therapy


, 15th Ed., pp. 1206-1228, Berkow et al., eds., Rahay, N.J., 1987). When used with the compounds of the invention, such chemotherapeutic agents may be used individually (e.g., 5-FU and oligonucleotide), sequentially (e.g., 5-FU and oligonucleotide for a period of time followed by MTX and oligonucleotide), or in combination with one or more other such chemotherapeutic agents (e.g., 5-FU, MTX and oligonucleotide, or 5-FU, radiotherapy and oligonucleotide).




The formulation of therapeutic compositions and their subsequent administration is believed to be within the skill of those in the art. Dosing is dependent on severity and responsiveness of the disease state to be treated, with the course of treatment lasting from several days to several months, or until a cure is effected or a diminution of the disease state is achieved. Optimal dosing schedules can be calculated from measurements of drug accumulation in the body of the patient. Persons of ordinary skill can easily determine optimum dosages, dosing methodologies and repetition rates. Optimum dosages may vary depending on the relative potency of individual oligonucleotides, and can generally be estimated based on EC


50


s found to be effective in in vitro and in vivo animal models. In general, dosage is from 0.01 μg to 100 g per kg of body weight, and may be given once or more daily, weekly, monthly or yearly, or even once every 2 to 20 years. Persons of ordinary skill in the art can easily estimate repetition rates for dosing based on measured residence times and concentrations of the drug in bodily fluids or tissues. Following successful treatment, it may be desirable to have the patient undergo maintenance therapy to prevent the recurrence of the disease state, wherein the oligonucleotide is administered in maintenance doses, ranging from 0.01 μg to 100 g per kg of body weight, once or more daily, to once every 20 years.




Thus, in the context of this invention, by “therapeutically effective amount” is meant the amount of the compound which is required to have a therapeutic effect on the treated mammal. This amount, which will be apparent to the skilled artisan, will depend upon the type of mammal, the age and weight of the mammal, the type of disease to be treated, perhaps even the gender of the mammal, and other factors which are routinely taken into consideration when treating a mammal with a disease. A therapeutic effect is assessed in the mammal by measuring the effect of the compound on the disease state in the animal. For example, if the disease to be treated is cancer, therapeutic effects are assessed by measuring the rate of growth or the size of the tumor, or by measuring the production of compounds such as cytokines, production of which is an indication of the progress or regression of the tumor.











The following examples illustrate the present invention and are not intended to limit the same.




EXAMPLES




Example 1




Synthesis of Oligonucleotides




Unmodified oligodeoxynucleotides are synthesized on an automated DNA synthesizer (Applied Biosystems model 380B) using standard phosphoramidite chemistry with oxidation by iodine. β-cyanoethyldiisopropyl-phosphoramidites are purchased from Applied Biosystems (Foster City, Calif.). For phosphorothioate oligonucleotides, the standard oxidation bottle was replaced by a 0.2 M solution of


3


H-1,2-benzodithiole-3-one 1,1-dioxide in acetonitrile for the stepwise thiation of the phosphite linkages. The thiation cycle wait step was increased to 68 seconds and was followed by the capping step.




2′-methoxy oligonucleotides are synthesized using 2′-methoxy β-cyanoethyldiisopropyl-phosphoramidites (Chemgenes, Needham, Mass.) and the standard cycle for unmodified oligonucleotides, except the wait step after pulse delivery of tetrazole and base was increased to 360 seconds. Other 2′-alkoxy oligonucleotides were synthesized by a modification of this method, using appropriate 2′-modified amidites such as those available from Glen Research, Inc., Sterling, Va.




2′-fluoro oligonucleotides were synthesized as described in Kawasaki et al.,


J. Med. Chem


., 36, 831 (1993). Briefly, the protected nucleoside N


6


-benzoyl-2′-deoxy-2′-fluoroadenosine was synthesized utilizing commercially available 9-β-D-arabinofuranosyladenine as starting material and by modifying literature procedures whereby the 2′-α-fluoro atom is introduced by a S


N


2-displacement of a 2′-β-O-trifyl group. Thus N


6


-benzoyl-9-β-D-arabinofuranosyladenine was selectively protected in moderate yield as the 3′,5′-ditetrahydropyranyl (THP) intermediate. Deprotection of the THP and N


6


-benzoyl groups was accomplished using standard methodologies and standard methods were used to obtain the 5′-dimethoxytrityl-(DMT) and 5′-DMT-3′-phosphoramidite intermediates.




The synthesis of 2′-deoxy-2′-fluoroguanosine was accomplished using tetraisopropyldisiloxanyl (TPDS) protected 9-β-D-arabinofuranosylguanine as starting material, and conversion to the intermediate diisobutyryl-arabinofuranosylguanosine. Deprotection of the TPDS group was followed by protection of the hydroxyl group with THP to give diisobutyryl di-THP protected arabinofuranosylguanine. Selective O-deacylation and triflation was followed by treatment of the crude product with fluoride, then deprotection of the THP groups. Standard methodologies were used to obtain the 5′-DMT- and 5′-DMT-3′-phosphoramidites.




Synthesis of 2′-deoxy-2′-fluorouridine was accomplished by the modification of a known procedure in which 2, 2′-anhydro-1-β-D-arabinofuranosyluracil was treated with 70% hydrogen fluoride-pyridine. Standard procedures were used to obtain the 5′-DMT and 5′-DMT-3′ phosphoramidites.




2′-deoxy-2′-fluorocytidine was synthesized via amination of 2′-deoxy-2′-fluorouridine, followed by selective protection to give N


4


-benzoyl-2′-deoxy-2′-fluorocytidine. Standard procedures were used to obtain the 5′-DMT and 5′-DMT-3′ phosphoramidites.




2′-(2-methoxyethyl)-modified amidites are synthesized according to Martin, P.,


Helv. Chim. Acta


, 78,486 (1995). For ease of synthesis, the last nucleotide was a deoxynucleotide. 2′-O—CH


2


CH


2


OCH


3


-cytosines may be 5-methyl cytosines.




Synthesis of 5-Methyl Cytosine Monomers




2,2′-Anhydro[1-(β-D-arabinofuranosyl)-5-methyluridine]:




5-Methyluridine (ribosylthymine, commercially available through Yamasa, Choshi, Japan) (72.0 g, 0.279 M), diphenylcarbonate (90.0 g, 0.420 M) and sodium bicarbonate (2.0 g, 0.024 M) were added to DMF (300 mL). The mixture was heated to reflux, with stirring, allowing the evolved carbon dioxide gas to be released in a controlled manner. After 1 hour, the slightly darkened solution was concentrated under reduced pressure. The resulting syrup was poured into diethylether (2.5 L), with stirring. The product formed a gum. The ether was decanted and the residue was dissolved in a minimum amount of methanol (ca. 400 mL). The solution was poured into fresh ether (2.5 L) to yield a stiff gum. The ether was decanted and the gum was dried in a vacuum oven (60° C. at 1 mm Hg for 24 hours) to give a solid which was crushed to a light tan powder (57 g, 85% crude yield). The material was used as is for further reactions.




2′-O-Methoxyethyl-5-methyluridine:




2,2′-Anhydro-5-methyluridine (195 g, 0.81 M), tris(2-methoxyethyl)borate (231 g, 0.98 M) and 2-methoxyethanol (1.2 L) were added to a 2 L stainless steel pressure vessel and placed in a pre-heated oil bath at 160° C. After heating for 48 hours at 155-160° C., the vessel was opened and the solution evaporated to dryness and triturated with MeOH (200 mL). The residue was suspended in hot acetone (1 L). The insoluble salts were filtered, washed with acetone (150 mL) and the filtrate evaporated. The residue (280 g) was dissolved in CH


3


CN (600 mL) and evaporated. A silica gel column (3 kg) was packed in CH


2


Cl


2


/acetone/MeOH (20:5:3) containing 0.5% Et


3


NH. The residue was dissolved in CH


2


Cl


2


(250 mL) and adsorbed onto silica (150 g) prior to loading onto the column. The product was eluted with the packing solvent to give 160 g (63%) of product.




2′-O-Methoxyethyl-5′-O-dimethoxytrityl-5-methyluridine:




2′-O-Methoxyethyl-5-methyluridine (160 g, 0.506 M) was co-evaporated with pyridine (250 mL) and the dried residue dissolved in pyridine (1.3 L). A first aliquot of dimethoxytrityl chloride (94.3 g, 0.278 M) was added and the mixture stirred at room temperature for one hour. A second aliquot of dimethoxytrityl chloride (94.3 g, 0.278 M) was added and the reaction stirred for an additional one hour. Methanol (170 mL) was then added to stop the reaction. HPLC showed the presence of approximately 70% product. The solvent was evaporated and triturated with CH


3


CN (200 mL). The residue was dissolved in CHCl


3


(1.5 L) and extracted with 2×500 mL of saturated NaHCO


3


and 2×500 mL of saturated NaCl. The organic phase was dried over Na


2


SO


4


, filtered and evaporated. 275 g of residue was obtained. The residue was purified on a 3.5 kg silica gel column, packed and eluted with EtOAc/Hexane/Acetone (5:5:1) containing 0.5% Et


3


NH. The pure fractions were evaporated to give 164 g of product. Approximately 20 g additional was obtained from the impure fractions to give a total yield of 183 g (57%).




3′-O-Acetyl-2′-O-methoxyethyl-5′-O-dimethoxytrityl-5-methyluridine:




2′-O-Methoxyethyl-5′-O-dimethoxytrityl-5-methyluridine (106 g, 0.167 M), DMF/pyridine (750 mL of a 3:1 mixture prepared from 562 mL of DMF and 188 mL of pyridine) and acetic anhydride (24.38 mL, 0.258 M) were combined and stirred at room temperature for 24 hours. The reaction was monitored by tlc by first quenching the tic sample with the addition of MeOH. Upon completion of the reaction, as judged by tlc, MeOH (50 mL) was added and the mixture evaporated at 35° C. The residue was dissolved in CHCl


3


(800 mL) and extracted with 2×200 mL of saturated sodium bicarbonate and 2×200 mL of saturated NaCl. The water layers were back extracted with 200 mL of CHCl


3


. The combined organics were dried with sodium sulfate and evaporated to give 122 g of residue (approx. 90% product). The residue was purified on a 3.5 kg silica gel column and eluted using EtOAc/Hexane(4:1). Pure product fractions were evaporated to yield 96 g (84%).




3′-O-Acetyl-2′-O-methoxyethyl-5′-O-dimethoxytrityl-5-methyl-4-triazoleuridine:




A first solution was prepared by dissolving 3′-O-acetyl-2′-O-methoxyethyl-5′-O-dimethoxytrityl-5-methyluridine (96 g, 0.144 M) in CH


3


CN (700 mL) and set aside. Triethylamine (189 mL, 1.44 M) was added to a solution of triazole (90 g, 1.3 M) in CH


3


CN (1 L), cooled to −5° C. and stirred for 0.5 h using an overhead stirrer. POCl


3


was added dropwise, over a 30 minute period, to the stirred solution maintained at 0-10° C., and the resulting mixture stirred for an additional 2 hours. The first solution was added dropwise, over a 45 minute period, to the later solution. The resulting reaction mixture was stored overnight in a cold room. Salts were filtered from the reaction mixture and the solution was evaporated. The residue was dissolved in EtOAc (1 L) and the insoluble solids were removed by filtration. The filtrate was washed with 1×300 mL of NaHCO


3


and 2×300 mL of saturated NaCl, dried over sodium sulfate and evaporated. The residue was triturated with EtOAc to give the title compound.




2′-O-Methoxyethyl-5′-O-dimethoxytrityl-5-methylcytidine:




A solution of 3′-O-acetyl-2′-O-methoxyethyl-5′-O-dimethoxytrityl-5-methyl-4-triazoleuridine (103 g, 0.141 M) in dioxane (500 mL) and NH


4


OH (30 mL) was stirred at room temperature for 2 hours. The dioxane solution was evaporated and the residue azeotroped with MeOH (2×200 mL). The residue was dissolved in MeOH (300 mL) and transferred to a 2 liter stainless steel pressure vessel. MeOH (400 mL) saturated with NH


3


gas was added and the vessel heated to 100° C. for 2 hours (tlc showed complete conversion). The vessel contents were evaporated to dryness and the residue was dissolved in EtOAc (500 mL) and washed once with saturated NaCl (200 mL). The organics were dried over sodium sulfate and the solvent was evaporated to give 85 g (95%) of the title compound.




N


4


-N-Benzoyl-2′-O-methoxyethyl-5′-O-dimethoxytrityl-5-methylcytidine:




2′-O-Methoxyethyl-5′-O-dimethoxytrityl-5-methylcytidine (85 g, 0.134 M) was dissolved in DMF (800 mL) and benzoic anhydride (37.2 g, 0.165 M) was added with stirring. After stirring for 3 hours, tlc showed the reaction to be approximately 95% complete. The solvent was evaporated and the residue azeotroped with MeOH (200 mL). The residue was dissolved in CHCl


3


(700 mL) and extracted with saturated NaHCO


3


(2×300 mL) and saturated NaCl (2×300 mL), dried over MgSO


4


and evaporated to give a residue (96 g). The residue was chromatographed on a 1.5 kg silica column using EtOAc/Hexane (1:1) containing 0.5% Et


3


NH as the eluting solvent. The pure product fractions were evaporated to give 90 g (90%) of the title compound.




N


4


-Benzoyl-2′-O-methoxyethyl-5′-O-dimethoxytrityl-5-methylcytidine-3′-amidite:




N


4


-Benzoyl-2′-O-methoxyethyl-5′-O-dimethoxytrityl-5-methylcytidine (74 g, 0.10 M) was dissolved in CH


2


Cl


2


(1 L). Tetrazole diisopropylamine (7.1 g) and 2-cyanoethoxy-tetra(isopropyl)phosphite (40.5 mL, 0.123 M) were added with stirring, under a nitrogen atmosphere. The resulting mixture was stirred for 20 hours at room temperature (tlc showed the reaction to be 95% complete). The reaction mixture was extracted with saturated NaHCO


3


(1×300 mL) and saturated NaCl (3×300 mL). The aqueous washes were back-extracted with CH


2


Cl


2


(300 mL), and the extracts were combined, dried over MgSO


4


and concentrated. The residue obtained was chromatographed on a 1.5 kg silica column using EtOAcHexane (3:1) as the eluting solvent. The pure fractions were combined to give 90.6 g (87%) of the title compound.




5-methyl-2′-deoxycytidine (5-me-C) containing oligonucleotides were synthesized according to published methods [Sanghvi et al.,


Nucl. Acids Res


., 21, 3197 (1993)] using commercially available phosphoramidites (Glen Research, Sterling Va. or ChemGenes, Needham Mass.).




2′-O-(dimethylaminooxyethyl) nucleoside amidites




2′-(Dimethylaminooxyethoxy) nucleoside amidites [also known in the art as 2′-O-(dimethylaminooxyethyl) nucleoside amidites] are prepared as described in the following paragraphs. Adenosine, cytidine and guanosine nucleoside amidites are prepared similarly to the thymidine (5-methyluridine) except the exocyclic amines are protected with a benzoyl moiety in the case of adenosine and cytidine and with isobutyryl in the case of guanosine.




5′-O-tert-Butyldiphenylsilyl-O


2


-2′-anhydro-5-methyluridine




O


2


-2′-anhydro-5-methyluridine (Pro. Bio. Sint., Varese, Italy, 100.0 g, 0.416 mmol), dimethylaminopyridine (0.66 g, 0.013 eq, 0.0054 mmol) were dissolved in dry pyridine (500 ml) at ambient temperature under an argon atmosphere and with mechanical stirring. tert-Butyldiphenylchlorosilane (125.8 g, 119.0 mL, 1.1 eq, 0.458 mmol) was added in one portion. The reaction was stirred for 16 h at ambient temperature. TLC (Rf 0.22, ethyl acetate) indicated a complete reaction. The solution was concentrated under reduced pressure to a thick oil. This was partitioned between dichloromethane (1 L) and saturated sodium bicarbonate (2×1 L) and brine (1 L). The organic layer was dried over sodium sulfate and concentrated under reduced pressure to a thick oil. The oil was dissolved in a 1:1 mixture of ethyl acetate and ethyl ether (600 mL) and the solution was cooled to −10° C. The resulting crystalline product was collected by filtration, washed with ethyl ether (3×200 mL) and dried (40° C., 1 mm Hg, 24 h) to 149 g (74.8%) of white solid. TLC and NMR were consistent with pure product.




5′-O-tert-Butyldiphenylsilyl-2′-O-(2-hydroxyethyl)-5-methyluridine




In a 2 L stainless steel, unstirred pressure reactor was added borane in tetrahydrofuran (1.0 M, 2.0 eq, 622 mL). In the fume hood and with manual stirring, ethylene glycol (350 mL, excess) was added cautiously at first until the evolution of hydrogen gas subsided. 5′-O-tert-Butyldiphenylsilyl-O


2


-2′-anhydro-5-methyluridine (149 g, 0.311 mol) and sodium bicarbonate (0.074 g, 0.003 eq) were added with manual stirring. The reactor was sealed and heated in an oil bath until an internal temperature of 160° C. was reached and then maintained for 16 h (pressure<100 psig). The reaction vessel was cooled to ambient and opened. TLC (Rf 0.67 for desired product and Rf 0.82 for ara-T side product, ethyl acetate) indicated about 70% conversion to the product. In order to avoid additional side product formation, the reaction was stopped, concentrated under reduced pressure (10 to 1 mm Hg) in a warm water bath (40-100° C.) with the more extreme conditions used to remove the ethylene glycol. [Alternatively, once the low boiling solvent is gone, the remaining solution can be partitioned between ethyl acetate and water. The product will be in the organic phase.] The residue was purified by column chromatography (2 kg silica gel, ethyl acetate-hexanes gradient 1:1 to 4:1). The appropriate fractions were combined, stripped and dried to product as a white crisp foam (84 g, 50%), contaminated starting material (17.4 g) and pure reusable starting material 20 g. The yield based on starting material less pure recovered starting material was 58%. TLC and NMR were consistent with 99% pure product.




2′-O-([2-phthalimidoxy)ethyl]-5′-t-butyldiphenylsilyl-5-methyluridine




5′-O-tert-Butyldiphenylsilyl-2′-O-(2-hydroxyethyl)-5-methyluridine (20 g, 36.98 mmol) was mixed with triphenylphosphine (11.63 g, 44.36 mmol) and N-hydroxyphthalimide (7.24 g, 44.36 mmol). It was then dried over P


2


O


5


under high vacuum for two days at 40° C. The reaction mixture was flushed with argon and dry THF (369.8 mL, Aldrich, sure seal bottle) was added to get a clear solution. Diethylazodicarboxylate (6.98 mL, 44.36 mmol) was added dropwise to the reaction mixture. The rate of addition is maintained such that resulting deep red coloration is just discharged before adding the next drop. After the addition was complete, the reaction was stirred for 4 hrs. By that time TLC showed the completion of the reaction (ethylacetate:hexane, 60:40). The solvent was evaporated in vacuum. Residue obtained was placed on a flash column and eluted with ethyl acetate:hexane (60:40), to get 2′-O-([2-phthalimidoxy)ethyl]-5′-t-butyldiphenylsilyl-5-methyluridine as white foam (21.819, 86%).




5′-O-tert-butyldiphenylsilyl-2′-O-[(2-formadoximinooxy)ethyl]-5-methyluridine




2′-O-([2-phthalimidoxy)ethyl]-5′-t-butyldiphenylsilyl-5-methyluridine (3.1 g, 4.5 mmol) was dissolved in dry CH


2


Cl


2


(4.5 mL) and methylhydrazine (300 mL, 4.64 mmol) was added dropwise at −10° C. to 0° C. After 1 hr the mixture was filtered, the filtrate was washed with ice cold CH


2


Cl


2


and the combined organic phase was washed with water, brine and dried over anhydrous Na


2


SO


4


. The solution was concentrated to get 2′-O-(aminooxyethyl) thymidine, which was then dissolved in MeOH (67.5 mL). To this formaldehyde (20% aqueous solution, w/w, 1.1 eg.) was added and the mixture for 1 hr. Solvent was removed under vacuum; residue chromatographed to get 5′-O-tert-butyldiphenylsilyl-2′-O-[(2-formadoximinooxy)ethyl]-5-methyluridine as white foam (1.95, 78%).




5′-O-tert-Butyldiphenylsilyl-2′-O-[N,N-dimethylaminooxyethyl]-5-methyluridine




5′-O-tert-butyldiphenylsilyl-2′-O-[(2-formadoximinooxy)ethyl]-5-methyluridine (1.77 g, 3.12 mmol) was dissolved in a solution of 1M pyridinium p-toluenesulfonate (PPTS) in dry MeOH (30.6 mL). Sodium cyanoborohydride (0.39 g, 6.13 mmol) was added to this solution at 10° C. under inert atmosphere. The reaction mixture was stirred for 10 minutes at 10° C. After that the reaction vessel was removed from the ice bath and stirred at room temperature for 2 hr, the reaction monitored by TLC (5% MeOH in CH


2


Cl


2


). Aqueous NaHCO


3


solution (5%, 10 mL) was added and extracted with ethyl acetate (2×20 mL). Ethyl acetate phase was dried over anhydrous Na


2


SO


4


, evaporated to dryness. Residue was dissolved in a solution of 1M PPTS in MeOH (30.6 mL). Formaldehyde (20% w/w, 30 mL, 3.37 mmol) was added and the reaction mixture was stirred at room temperature for 10 minutes. Reaction mixture cooled to 10° C. in an ice bath, sodium cyanoborohydride (0.39 g, 6.13 mmol) was added and reaction mixture stirred at 10° C. for 10 minutes. After 10 minutes, the reaction mixture was removed from the ice bath and stirred at room temperature for 2 hrs. To the reaction mixture 5% NaHCO


3


(25 mL) solution was added and extracted with ethyl acetate (2×25 mL). Ethyl acetate layer was dried over anhydrous Na


2


SO


4


and evaporated to dryness. The residue obtained was purified by flash column chromatography and eluted with 5% MeOH in CH


2


Cl


2


to get 5′-O-tert-butyldiphenylsilyl-2′-O-[N,N-dimethylaminooxyethyl]-5-methyluridine as a white foam (14.6 g, 80%).




2′-O-(dimethylaminooxyethyl)-5-methyluridine




Triethylamine trihydrofluoride (3.91 mL, 24.0 mmol) was dissolved in dry THF and triethylamine (1.67 mL, 12 mmol, dry, kept over KOH). This mixture of triethylamine-2HF was then added to 5′-O-tert-butyldiphenylsilyl-2′-O-[N,N-dimethylaminooxyethyl]-5-methyluridine (1.40 g, 2.4 mmol) and stirred at room temperature for 24 hrs. Reaction was monitored by TLC (5% MeOH in CH


2


Cl


2


). Solvent was removed under vacuum and the residue placed on a flash column and eluted with 10% MeOH in CH


2


Cl


2


to get 2′-O-(dimethylaminooxyethyl)-5-methyluridine (766 mg, 92.5%).




5′-O-DMT-2′-O-(dimethylaminooxyethyl)-5-methyluridine




2′-O-(dimethylaminooxyethyl)-5-methyluridine (750 mg, 2.17 mmol) was dried over P


2


O


5


under high vacuum overnight at 40° C. It was then co-evaporated with anhydrous pyridine (20 mL). The residue obtained was dissolved in pyridine (11 mL) under argon atmosphere. 4-dimethylaminopyridine (26.5 mg, 2.60 mmol), 4,4′-dimethoxytrityl chloride (880 mg, 2.60 mmol) was added to the mixture and the reaction mixture was stirred at room temperature until all of the starting material disappeared. Pyridine was removed under vacuum and the residue chromatographed and eluted with 10% MeOH in CH


2


Cl


2


(containing a few drops of pyridine) to get 5′-O-DMT-2′-O-(dimethylamino-oxyethyl)-5-methyluridine (1.13 g, 80%).




5′-O-DMT-2′-O-(2-N,N-dimethylaminooxyethyl)-5-methyluridine-3′-[(2-cyanoethyl)-N,N-diisopropylphosphoramidite]




5′-O-DMT-2′-O-(dimethylaminooxyethyl)-5-methyluridine (1.08 g, 1.67 mmol) was co-evaporated with toluene (20 mL). To the residue N,N-diisopropylamine tetrazonide (0.29 g, 1.67 mmol) was added and dried over P


2


O


5


under high vacuum overnight at 40° C. Then the reaction mixture was dissolved in anhydrous acetonitrile (8.4 mL) and 2-cyanoethyl-N,N,N


1


,N


1


-tetraisopropylphosphoramidite (2.12 mL, 6.08 mmol) was added. The reaction mixture was stirred at ambient temperature for 4 hrs under inert atmosphere. The progress of the reaction was monitored by TLC (hexane:ethyl acetate 1:1). The solvent was evaporated, then the residue was dissolved in ethyl acetate (70 mL) and washed with 5% aqueous NaHCO


3


(40 mL) Ethyl acetate layer was dried over anhydrous Na


2


SO


4


and concentrated. Residue obtained was chromatographed (ethyl acetate as eluent) to get 5′-O-DMT-2′-O-(2-N,N-dimethylaminooxyethyl)-5-methyluridine-3′-[(2-cyanoethyl)-N,N-diisopropylphosphoramidite] as a foam (1.04 g, 74.9%).




2′-(Aminooxyethoxy) nucleoside amidites




2′-(Aminooxyethoxy) nucleoside amidites [also known in the art as 2′-O-(aminooxyethyl) nucleoside amidites] are prepared as described in the following paragraphs. Adenosine, cytidine and thymidine nucleoside amidites are prepared similarly.




N2-isobutyryl-6-O-diphenylcarbamoyl-2′-O-(2-ethylacetyl)-5′-O-(4,4′-dimethoxytrityl)guanosine-3′-[(2-cyanoethyl)-N,N-diisopropylphosphoramidite]




The 2′-O-aminooxyethyl guanosine analog may be obtained by selective 2′-O-alkylation of diaminopurine riboside. Multigram quantities of diaminopurine riboside may be purchased from Schering AG (Berlin) to provide 2′-O-(2-ethylacetyl) diaminopurine riboside along with a minor amount of the 3′-O-isomer. 2′-O-(2-ethylacetyl) diaminopurine riboside may be resolved and converted to 2′-O-(2-ethylacetyl)guanosine by treatment with adenosine deaminase. (McGee, D. P. C., Cook, P. D., Guinosso, C. J., WO 94/02501 A1 940203.) Standard protection procedures should afford 2′-O-(2-ethylacetyl )-5′-O-(4,4′-dimethoxytrityl)guanosine and 2-N-isobutyryl-6-O-diphenylcarbamoyl-2′-O-(2-ethylacetyl)-5′-O-(4,4′-dimethoxy trityl)guanosine which may be reduced to provide 2-N-isobutyryl-6-O-diphenylcarbamoyl-2′-O-(2-ethylacetyl)-5′-O-(4,4′-dimethoxytrityl) guanosine. As before the hydroxyl group may be displaced by N-hydroxyphthalimide via a Mitsunobu reaction, and the protected nucleoside may phosphitylated as usual to yield 2-N-isobutyryl-6-O-diphenylcarbamoyl-2′-O-(2-ethylacetyl)-5′-O-(4,4′-dimethoxytrityl)guanosine-3′-[(2-cyanoethyl)-N,N-diisopropylphosphoramidite].




Oligonucleotides having methylene (methylimino) (MMI) backbones are synthesized according to U.S. Pat. No. 5,378,825, which is coassigned to the assignee of the present invention and is incorporated herein in its entirety. For ease of synthesis, various nucleoside dimers containing MMI linkages were synthesized and incorporated into oligonucleotides. Other nitrogen-containing backbones are synthesized according to WO 92/20823 which is also coassigned to the assignee of the present invention and incorporated herein in its entirety.




Oligonucleotides having amide backbones are synthesized according to De Mesmaeker et al.,


Acc. Chem. Res


., 28, 366 (1995). The amide moiety is readily accessible by simple and well-known synthetic methods and is compatible with the conditions required for solid phase synthesis of oligonucleotides.




Oligonucleotides with morpholino backbones are synthesized according to U.S. Pat. No. 5,034,506 (Summerton and Weller).




Peptide-nucleic acid (PNA) oligomers are synthesized according to P. E. Nielsen et al.,


Science


, 254, 1497 (1991).




After cleavage from the controlled pore glass column (Applied Biosystems) and deblocking in concentrated ammonium hydroxide at 55° C. for 18 hours, the oligonucleotides are purified by precipitation twice out of 0.5 M NaCl with 2.5 volumes ethanol. Synthesized oligonucleotides were analyzed by polyacrylamide gel electrophoresis on denaturing gels and judged to be at least 85% full length material. The relative amounts of phosphorothioate and phosphodiester linkages obtained in synthesis were periodically checked by


31


p nuclear magnetic resonance spectroscopy, and for some studies oligonucleotides were purified by HPLC, as described by Chiang et al.,


J. Biol. Chem


., 266, 18162 (1991). Results obtained with HPLC-purified material were similar to those obtained with non-HPLC purified material.




Example 2




Human mdm2 Oligonucleotide Sequences




The oligonucleotides tested are presented in Table 1. Sequence data are from the cDNA sequence published by Oliner, J. D., et al.,


Nature


, 358, 80 (1992); Genbank accession number Z12020, provided herein as SEQ ID NO: 1. Oligonucleotides were synthesized primarily as chimeric oligonucleotides having a centered deoxy gap of eight nucleotides flanked by 2′-O-methoxyethyl regions.




A549 human lung carcinoma cells (American Type Culture Collection, Manassas, Va.) were routinely passaged at 80-90% confluency in Dulbecco's modified Eagle's medium (DMEM) and 10% fetal bovine serum (Hyclone, Logan, Utah). JEG-3 cells, a human choriocarcinoma cell line (American Type Culture Collection, Manassas, Va.), were maintained in RPMI1640, supplemented with 10% fetal calf serum. All cell culture reagents, except as otherwise indicated, are obtained from Life Technologies (Rockville, Md.).




549 cells were treated with phosphorothioate oligonucleotides at 200 nM for four hours in the presence of 6 μg/ml LIPOFECTINT™, washed and allowed to recover for an additional 20 hours. Total RNA was extracted and 15-20 μg of each was resolved on 1% gels and transferred to nylon membranes. The blots were probed with a


32


p radiolabeled mdm2 cDNA probe and then stripped and reprobed with a radiolabeled G3PDH probe to confirm equal RNA loading. mdm2 transcripts were examined and quantified with a PhosphorImager (Molecular Dynamics, Sunnyvale, Calif.). Results are shown in Table 2. Oligonucleotides 16506 (SEQ ID NO: 3), 16507 (SEQ ID NO: 4), 16508 (SEQ ID NO: 5), 16510 (SEQ ID NO: 7), 16518 (SEQ ID NO: 15), 165020 (SEQ ID NO: 17), 16521 (SEQ ID NO: 18), 16522 (SEQ ID NO: 19) and 16524 (SEQ ID NO: 21) gave at least approximately 50% reduction of mdm2 mRNA levels. Oligonucleotides 16507 and 16518 gave better than 85% reduction of mdm2.












TABLE 1











Nucleotide Sequences of Human mdm2






Phosphorothioate Oligonucleotides


















TARGET GENE




GENE






ISIS




NUCLEOTIDE SEQUENCE


1






SEQ ID




NUCLEOTIDE




TARGET






NO.




(5′ → 3′)




NO:




CO-ORDINATES


2






REGION









16506






CAGCCAAGCTCGCG




CGGTGC






 3




0001-0020




5′-UTR






16507






TCTTT


CCGACACAC


AGGGCC






 4




0037-0056




5′-UTR






16508






CAGCAG


GATCTCGG


TCAGAG






 5




0095-0114




5′-UTR






16509






GGGCGC


TCGTACGC


ACTAAT






 6




0147-0166




5′-UTR






16510






TCGGGG


ATCATTCC


ACTCTC






 7




0181-0200




5′-UTR






16511






CGGGGT


TTTCGCGC


TTGGAG






 8




0273-0292




5′-UTR






16512






CATTTG


CCTGCTCC


TCACCA






 9




0295-0314




AUG






16513






GTATTG


CACATTTG


CCTGCT






10




0303-0322




AUG






16514






AGCACC


ATCAGTAG


GTACAG






11




0331-0350




ORF






16515






CTACCA


AGTTCCTG


TAGATC






12




0617-0636




ORF






16516






TCAACT


TCAAATTC


TACACT






13




1047-1066




ORF






16517






TTTACA


ATCAGGAA


CATCAA






14




1381-1400




ORF






16518






AGCTTC


TTTGCACA


TGTAAA






15




1695-1714




ORF






16519






CAGGTC


AACTAGGG


GAAATA






16




1776-1795




stop






16520






TCTTAT


AGACAGGT


CAACTA






17




1785-1804




stop






16521






TCCTAG


GGTTATAT


AGTTAG






18




1818-1837




3′-UTR






16522






AAGTAT


TCACTATT


CCACTA






19




1934-1953




3′-UTR






16523






CCAAGA


TCACCCAC


TGCACT






20




2132-2151




3′-UTR






16524






AGGTGT


GGTGGCAG


ATGACT






21




2224-2243




3′-UTR






16525






CCTGTC


TCTACTAA


AAGTAC






22




2256-2275




3′-UTR






17604






ACAAGC


CTTCGCTC


TACCGG






23




scrambled




16507









control






17605






TTCAGC


GCATTTGT


ACATAA






24




scrambled




16518









control






17615




TCTTTCCGACACACAGGGCC




25




0037-0056




5′-UTR






17616




AGCTTCTTTGCACATGTAAA




15




1695-1714




ORF






17755






AGC


TTCTTTGCACATGT


AAA






15




1695-1714




ORF






17756






AGCTTC


TTTATACA


TGTAAA






26




2-base




17616









mismatch






17757






AGCTTC


TTTACACA


TGTAAA






27




1-base




17616









mismatch













1


Emboldened residues, 2′-methoxyethoxy- residues (others are 2′-deoxy-) including “C” residues, 5-methyl-cytosines; all linkages are phosphorothioate linkages.












2


Co-ordinates from Genbank Accession No. Z12020, locus name “HSP53ASSG”, SEQ ID NO: 1. Oligonucleotides 16505-16511 are targeted to the 5′ UTR of the L-mdm2 transcript as described hereinabove [Landers et al., Cancer Res., 57, 3562 (1997)] Nucleotide coordinates on the Landers sequence [Landers et al., Cancer Res., 57, 3562 (1997) and Genbank accession no. U39736] are identical to those shown in Table 1 except for ISIS 16511, which maps to








# nucleotides 267-286 on the Landers sequence.



















TABLE 2











Activities of Phosphorothioate Oligonucleotides






Targeted to Human mdm2
















SEQ




GENE








ISIS




ID




TARGET




% mRNA




% mRNA






No:




NO:




REGION




EXPRESSION




INHIBITION









LIPOFECTIN ™














100% 




 0%






only






16506




 3




5′-UTR




45%




55%






16507




 4




5′-UTR




13%




87%






16508




 5




5′-UTR




38%




62%






16509




 6




5′-UTR




161% 











16510




 7




5′-UTR




46%




54%






16511




 8




5′-UTR




91%




 9%






16512




 9




AUG




89%




11%






16513




10




AUG




174% 











16514




11




Coding




92%




 8%






16515




12




Coding




155% 











16516




13




Coding




144% 











16517




14




Coding




94%




 6%






16518




15




Coding




 8%




92%






16519




16




stop




73%




27%






16520




17




stop




51%




49%






16521




18




3′-UTR




38%




62%






16522




19




3′-UTR




49%




51%






16523




20




3′-UTR




109% 











16524




21




3′-UTR




47%




53%






16525




22




3′-UTR




100% 



















Example 3




Dose Response of Antisense Oligonucleotide Effects on Human mdm2 mRNA Levels in A549 Cells




Oligonucleotides 16507 and 16518 were tested at different concentrations. A549 cells were grown, treated and processed as described in Example 2. LIPOFECTIN™ was added at a ratio of 3 μg/ml per 100 nM of oligonucleotide. The control included LIPOFECTIN™ at a concentration of 12 μg/ml. Oligonucleotide 17605, an oligonucleotide with different sequence but identical base composition to oligonucleotide 16518, was used as a negative control. Results are shown in Table 3. Oligonucleotides 16507 and 16518 gave approximately 90% inhibition at concentrations greater than 200 nM. No inhibition was seen with oligonucleotide 17605.












TABLE 3











Dose Response of A549 Cells to mdm2






Antisense Oligonucleotides (ASOs)

















SEQ











ID




ASO Gene





% mRNA




% mRNA






ISIS #




NO:




Target




Dose




Expression




Inhibition









control









LIPOFECTIN ™









100% 




 0%








only






16507




4




5′-UTR




 25 nM




55%




45%






16507




4









 50 nM




52%




48%






16507




4









100 nM




24%




76%






16507




4









200 nM




12%




88%






16518




15




Coding




 50 nM




18%




82%






16518




15









100 nM




14%




86%






16518




15









200 nM




 9%




91%






16518




15









400 nM




 8%




92%






17605




24




scrambled




400 nM




129% 



















Example 4




Time Course of Antisense Oligonucleotide Effects mdm2 mRNA Levels in A549 Cells




Oligonucleotides 16507 and 17605 were tested by treating for varying times. A549 cells were grown, treated for times indicated in Table 4 and processed as described in Example 2. Results are shown in Table 4. Oligonucleotide 16507 gave greater than 90% inhibition throughout the time course. No inhibition was seen with oligonucleotide 17605.












TABLE 4











Time Course of Response of Cells to






Human mdm2 Antisense Oligonucleotides (ASOs)

















SEQ




ASO Gene










ID




Target





% RNA




% RNA






ISIS #




NO:




Region




Time




Expression




Inhibition









basal









LIPOFECTIN ™




24 h




100%




 0%








only






basal









LIPOFECTIN ™




48 h




100%




 0%








only






basal









LIPOFECTIN ™




72 h




100%




 0%








only






16518




15




Coding




24 h




 3%




97%






16518




15









48 h




 6%




94%






16518




15









72 h




 5%




95%






17605




24




scrambled




24 h




195%











17605




24









48 h




100%











17605




24









72 h




102%



















Example 5




Effect of Antisense Oligonucleotides on Cell Proliferation in A549 Cells




49 cells were treated on day 0 for four hours with 400 nM oligonucleotide and 12 mg/ml LIPOFECTIN. After four hours, the medium was replaced. Twenty-four, forty-eight or seventy-two hours after initiation of oligonucleotide treatment, live cells were counted on a hemacytometer. Results are shown in Table 5.












TABLE 5











Antisense Inhibition of Cell Proliferation






in A549 cells

















SEQ











ID




ASO Gene





% Cell




% Growth






ISIS #




NO:




Target Region




Time




Growth




Inhibition









basal









LIPOFECTIN ™




24 h




100% 




0%








only






basal









LIPOFECTIN ™




48 h




100% 




0%








only






basal









LIPOFECTIN ™




72 h




100% 




0%








only






16518




15




Coding




24 h




53%




47% 






16518




15









48 h




27%




73% 






16518




15









72 h




17%




83% 






17605




24




scrambled




24 h




93%




7%






17605




24









48 h




76%




24% 






17605




24









72 h




95%




5%














Example 6




Effect of mdm2 Antisense Oligonucleotide on p53 Protein Levels




JEG3 cells were cultured and treated as described in Example 2, except that 300 nM oligonucleotide and 9 μg/ml of LIPOFECTIN™ was used.




For determination of p53 protein levels by western blot, cellular extracts were prepared using 300 μl of RIPA extraction buffer per 100-mm dish. The protein concentration was quantified by Bradford assay using the BioRad kit (BioRad, Hercules, Calif.). Equal amounts of protein were loaded on 10% or 12% SDS-PAGE mini-gel (Novex, San Diego, Calif.). Once transferred to PVDF membranes (Millipore, Bedford, Mass.), the membranes were then treated for a minimum of 2 h with specific primary antibody (p53 antibody, Transduction Laboratories, Lexington, Ky.) followed by incubation with secondary antibody conjugated to HRP. The results were visualized by ECL Plus Western Blotting Detection System (Amersham Pharmacia Biotech, Piscataway, N.J.). In some experiments, the blots were stripped in stripping buffer (2% SDS, 12.5 mM Tris, pH 6.8) for 30 min. at 50° C. After extensive washing, the blots were blocked and blotted with different primary antibody.




Results are shown in Table 6. Treatment with mdm2 antisense oligonucleotide results in the induction of p53 levels. An approximately three-fold increase in activity was seen under these conditions.












TABLE 6











Activity of ISIS 16518 on p53 Protein Levels


















GENE








ISIS




SEQ ID




TARGET




% protein







No:




NO:




REGION




EXPRESSION











LIPOFECTIN ™ only














100%







16518




15




coding




289%















Example 7




Effect of ISIS 16518 on Expression of p53 Mediated Genes




p53 is known to regulate the expression of a number of genes and to be involved in apoptosis. Representative genes known to be regulated by p53 include p21 (Deng, C., et al.,


Cell


, 1995, 82, 675), bax (Selvakumaran, M., et al.,


Oncogene


, 1994, 9, 1791-1798) and GADD45 (Carrier, F., et al.,


J. Biol. Chem


., 1994, 269, 32672-32677). The effect of an mdm2 antisense oligonucleotide on these genes is investigated by RPA analysis using the RIBOQUANT™ RPA kit, according to the manufacturer's instructions (Pharmingen, San Diego, Calif.), along with the hSTRESS-1 multi-probe template set. Included in this template set are bclx, p53, GADD45, c-fos, p21, bax, bcl2 and mcl1. The effect of mdm2 antisense oligonucleotides on p53-mediated apoptosis can readily be assessed using commercial kits based on apoptotic markers such as DNA fragmentation or caspase activity.




Example 8




Additional Human mdm2 Chimeric (deoxy gapped) Antisense Oligonucleotides




Additional oligonucleotides targeted to the 5′-untranslated region of human mdm2 MRNA were designed and synthesized. Sequence data are from the cDNA sequence published by Zauberman, A., et al.,


Nucleic Acids Res


., 23, 2584 (1995); Genbank accession number HSU28935. Oligonucleotides were synthesized primarily as chimeric oligonucleotides having a centered deoxy gap of eight nucleotides flanked by 2′-O-methoxyethyl regions. The oligonucleotide sequences are shown in Table 7. These oligonucleotides were tested in A549 cells as described in Example 2. Results are shown in Table 8.












TABLE 7











Nucleotide Sequences of additional Human mdm2






Chimeric (deoxy gapped) Phosphorothioate Oligonucleotides


















TARGET GENE




GENE






ISIS




NUCLEOTIDE SEQUENCE


1






SEQ ID




NUCLEOTIDE




TARGET






NO.




(5′ → 3′)




NO:




CO-ORDINATES


2






REGION









21926




CTACCCTCCAATCGCCACTG




28




0238-0257




coding






21927




GGTCTACCCTCCAATCGCCA




29




0241-0260




coding






21928




CGTGCCCACAGGTCTACCCT




30




0251-0270




coding






21929




AAGTGGCGTGCGTCCGTGCC




31




0265-0284




coding






21930




AAAGTGGCGTGCGTCCGTGC




32




0266-0285




coding













1


Emboldened residues, 2′-methoxyethoxy- residues (others are 2′-deoxy-); all 2′-methoxyethoxy-cytosine and 2′-deoxy-cytosine residues, 5-methyl-cytosines; all linkages are phosphorothioate linkages.












2


Co-ordinates from Genbank Accession No. U28935, locus name “HSU28935”, SEQ ID NO: 2.





















TABLE 8











Activities of Chimeric (deoxy gapped) Oligonucleotides






Targeted to Human mdm2
















SEQ




GENE








ISIS




ID




TARGET




% mRNA




% mRNA






No:




NO:




REGION




EXPRESSION




INHIBITION









LIPOFECTIN ™














100%




 0%






only






21926




28




coding




345%











21927




29




coding




500%











21928




30




coding




417%











21929




31




coding




 61%




39%






21930




32




coding




 69%




31%














These oligonucleotide sequences were also tested for their ability to reduce mdm2 protein levels. JEG3 cells were cultured and treated as described in Example 2, except that 300 nM oligonucleotide and 9 μg/ml of LIPOFECTIN™ was used. Mdm2 protein levels were assayed by Western blotting as described in Example 6, except an mouse anti-mdm2 monoclonal antibody (Santa Cruz Biotechnology, Santa Cruz, Calif.) was used. Results are shown in Table 9.












TABLE 9











Activities of Chimeric (deoxy gapped) Human mdm2 Antisense






Oligonucleotides on mdm2 Protein Levels
















SEQ




GENE








ISIS




ID




TARGET




% PROTEIN




% PROTEIN






No:




NO:




REGION




EXPRESSION




INHIBITION









LIPOFECTIN ™














100%




 0%






only






21926




28




coding




 30%




70%






21927




29




coding




 18%




82%






21928




30




coding




 43%




57%






21929




31




coding




 62%




33%






21930




32




coding




 56%




44%














Each oligonucleotide tested reduced mdm2 protein levels by greater than approximately 40%. Maximum inhibition was seen with oligonucleotide 21927 (SEQ ID NO. 29) which gave greater than 80% inhibition of mdm2 protein.




Example 9




Additional Human mdm2 Antisense Oligonucleotides




Additional oligonucleotides targeted to human mdm2 mRNA were designed and synthesized. Sequence data are from the cDNA sequence published by Zauberman, A., et al.,


Nucleic Acids Res


., 23, 2584 (1995); Genbank accession number HSU28935. Oligonucleotides were synthesized in 96 well plate format via solid phase P(III) phosphoramidite chemistry on an automated synthesizer capable of assembling 96 sequences simultaneously in a standard 96 well format. Phosphodiester internucleotide linkages were afforded by oxidation with aqueous iodine. Phosphorothioate internucleotide linkages were generated by sulfurization utilizing 3,H-1,2 benzodithiole-3-one 1,1 dioxide (Beaucage Reagent) in anhydrous acetonitrile. Standard base-protected beta-cyanoethyl-di-isopropyl phosphoramidites were purchased from commercial vendors (e.g. PE-Applied Biosystems, Foster City, Calif., or Pharmacia, Piscataway, N.J.). Non-standard nucleosides are synthesized as per published methods. They are utilized as base protected beta-cyanoethyldiisopropyl phosphoramidites.




Oligonucleotides were cleaved from support and deprotected with concentrated NH


4


OH at elevated temperature (55-60° C.) for 12-16 hours and the released product then dried in vacuo. The dried product was then re-suspended in sterile water to afford a master plate from which all analytical and test plate samples are then diluted utilizing robotic pipettors.




Two sets of oligonucleotides were synthesized; one as phosphorothioate oligodeoxynucleotides, the other as chimeric oligonucleotides having a centered deoxy gap of ten nucleotides flanked by regions of five 2′-O-methoxyethyl nucleotides. These oligonucleotides sequences are shown in Tables 10 and 11.




mRNA was isolated using the RNAEASY® kit (Qiagen, Santa Clarita, Calif.).












TABLE 10











Nucleotide Sequences of Human mdm2






Phosphorothioate Oligodeoxynucleotides















ISIS




NUCLEOTIDE SEQUENCE


1






SEQ ID




TARGET GENE NUCLEOTIDE




GENE TARGET






NO.




(5′ -> 3′)




NO:




CO-ORDINATES


2






REGION









31712




AAGCAGCCAAGCTCGCGCGG




 33




0004-0023




5′ UTR






31552




CAGGCCCCAGAAGCAGCCAA




 34




0014-0033




5′ UTR






31713




GCCACACAGGCCCCAGAAGC




 35




0020-0039




5′ UTR






31394




ACACACAGGGCCACACAGGC




 36




0029-0048




5′ UTR






31714




TTCCGACACACAGGGCCACA




 37




0034-0053




5′ UTR






31553




GCTCCATCTTTCCGACACAC




 38




0043-0062




5′ UTR






31715




GCTTCTTGCTCCATCTTTCC




 39




0050-0069




5′ UTR






31395




CCCTCGGGCTCGGCTTCTTG




 40




0062-0081




5′ UTR






31716




GCGGCCGCCCCTCGGGCTCG




 41




0070-0089




5′ UTR






31554




AAGCAGCAGGATCTCGGTCA




 42




0098-0107




5′ UTR






31717




GCTGCGAAAGCAGCAGGATC




 43




0105-0124




5′ UTR






31396




TGCTCCTGGCTGCGAAAGCA




 44




0113-0132




5′ UTR






31718




GGGACGGTGCTCCTGGCTGC




 45




0120-0139




5′ UTR






31555




ACTGGGCGCTCGTACGCACT




 46




0150-0169




5′ UTR






31719




GCCAGGGCACTGGGCGCTCG




 47




0158-0177




5′ UTR






31397




TCTCCGGGCCAGGGCACTGG




 48




0165-0184




5′ UTR






31720




TCATTCCACTCTCCGGGCCA




 49




0174-0193




5′ UTR






31556




GGAAGCACGACGCCCTGGGC




 50




0202-0221




5′ UTR






31721




TACTGCGGAAGCACGACGCC




 51




0208-0227




5′ UTR






31398




GGGACTGACTACTGCGGAAG




 52




0217-0236




5′ UTR






31722




TCAAGACTCCCCAGTTTCCT




 53




0242-0261




5′ UTR






31557




CCTGCTCCTCACCATCCGGG




 54




0289-0308




5′ UTR






31399




TTTGCCTGCTCCTCACCATC




 55




0293-0312




AUG






31400




ATTTGCCTGCTCCTCACCAT




 56




0294-0313




AUG






31401




CATTTGCCTGCTCCTCACCA




 9




0295-0314




AUG






31402




ACATTTGCCTGCTCCTCACC




 57




0296-0315




AUG






31403




CACATTTGCCTGCTCCTCAC




 58




0297-0316




AUG






31404




GCACATTTGCCTGCTCCTCA




 59




0298-0317




AUG






31405




TGCACATTTGCCTGCTCCTC




 60




0299-0318




AUG






31406




TTGCACATTTGCCTGCTCCT




 61




0300-0319




AUG






31407




ATTGCACATTTGCCTGCTCC




 62




0301-0320




AUG






31408




TATTGCACATTTGCCTGCTC




 63




0302-0321




AUG






31409




GTATTGCACATTTGCCTGCT




 10




0303-0322




AUG






31410




GGTATTGCACATTTGCCTGC




 64




0304-0323




AUG






31411




TGGTATTGCACATTTGCCTG




 65




0305-0324




AUG






31412




TTGGTATTGCACATTTGCCT




 66




0306-0325




AUG






31413




GTTGGTATTGCACATTTGCC




 67




0307-0326




AUG






31414




TGTTGGTATTGCACATTTGC




 68




0308-0327




AUG






31415




ATGTTGGTATTGCACATTTG




 69




0309-0328




AUG






31416




CATGTTGGTATTGCACATTT




 70




0310-0329




AUG






31417




ACATGTTGGTATTGCACATT




 71




0311-0330




AUG






31418




GACATGTTGGTATTGCACAT




 72




0312-0331




AUG






31419




AGACATGTTGGTATTGCACA




 73




0313-0332




AUG






31420




CAGACATGTTGGTATTGCAC




 74




0314-0333




AUG






31558




CAGTAGGTACAGACATGTTG




 75




0323-0342




coding






31723




TACAGCACCATCAGTAGGTA




 76




0334-0353




coding






31421




GGAATCTGTGAGGTGGTTAC




 77




0351-0370




coding






31559




TTCCGAAGCTGGAATCTGTG




 78




0361-0380




coding






31724




AGGGTCTCTTGTTCCGAAGC




 79




0372-0391




coding






31422




GCTTTGGTCTAACCAGGGTC




 80




0386-0405




coding






31560




GCAATGGCTTTGGTCTAACC




 81




0392-0411




coding






31725




TAACTTCAAAAGCAATGGCT




 82




0403-0422




coding






31423




GTGCACCAACAGACTTTAAT




 83




0422-0441




coding






31561




ACCTCTTTCATAGTATAAGT




 84




0450-0469




coding






31726




ATAATATACTGGCCAAGATA




 85




0477-0496




coding






31424




TAATCGTTTAGTCATAATAT




 86




0490-0509




coding






31727




ATCATATAATCGTTTAGTCA




 87




0496-0515




coding






31562




GCTTCTCATCATATAATCGT




 88




0503-0522




coding






31728




CAATATGTTGTTGCTTCTCA




 89




0515-0534




coding






31425




GAACAATATACAATATGTTG




 90




0525-0544




coding






31729




TCATTTGAACAATATACAAT




 91




0531-0550




coding






31563




TAGAAGATCATTTGAACAAT




 92




0538-0557




coding






31730




AACAAATCTCCTAGAAGATC




 93




0549-0568




coding






31426




TGGCACGCCAAACAAATCTC




 94




0559-0578




coding






31731




AGAAGCTTGGCACGCCAAAC




 95




0566-0585




coding






31564




CTTTCACAGAGAAGCTTGGC




 96




0575-0594




coding






31732




TTTTCCTGTGCTCTTTCACA




 97




0587-0606




coding






31427




TATATATTTTCCTGTGCTCT




 98




0593-0612




coding






31733




ATCATGGTATATATTTTCCT




 99




0600-0619




coding






31565




TTCCTGTAGATCATGGTATA




100




0609-0628




coding






31734




TACTACCAAGTTCCTGTAGA




101




0619-0638




coding






31428




TTCCTGCTGATTGACTACTA




102




0634-0653




coding






31566




TGAGTCCGATGATTCCTGCT




103




0646-0665




coding






31735




CAGATGTACCTGAGTCCGAT




104




0656-0675




coding






31429




CTGTTCTCACTCACAGATGT




105




0669-0688




coding






31567




TTCAAGGTGACACCTGTTCT




106




0682-0701




coding






31736




ACTCCCACCTTCAAGGTGAC




107




0691-0710




coding






31430




GGTCCTTTTGATCACTCCCA




108




0704-0723




coding






31568




AAGCTCTTGTACAAGGTCCT




109




0718-0737




coding






31737




CTCTTCCTGAAGCTCTTGTA




110




0727-0746




coding






31431




AAGATGAAGGTTTCTCTTCC




111




0740-0759




coding






31569




AAACCAAATGTGAAGATGAA




112




0752-0771




coding






31738




ATGGTCTAGAAACCAAATGT




113




0761-0780




coding






31432




CTAGATGAGGTAGATGGTCT




114




0774-0793




coding






31570




AATTGCTCTCCTTCTAGATG




115




0787-0806




coding






31739




TCTGTCTCACTAATTGCTCT




116




0798-0817




coding






31433




TCTGAATTTTCTTCTGTCTC




117




0810-0829




coding






31571




CACCAGATAATTCATCTGAA




118




0824-0843




coding






31740




TTTGTCGTTCACCAGATAAT




119




0833-0852




coding






31434




GTGGCGTTTTCTTTGTCGTT




120




0844-0863




coding






31572




TACTATCAGATTTGTGGCGT




121




0857-0876




coding






31741




GAAAGGGAAATACTATCAGA




122




0867-0886




coding






31435




GCTTTCATCAAAGGAAAGGG




123




0880-0899




coding






31573




TACACACAGAGCCAGGCTTT




124




0895-0914




coding






31742




CTCCCTTATTACACACAGAG




125




0904-0923




coding






31436




TCACAACATATCTCCCTTAT




126




0915-0934




coding






31574




CTACTGCTTCTTTCACAACA




127




0927-0946




coding






31743




GATTCACTGCTACTGCTTCT




128




0936-0955




coding






31437




TGGCGTCCCTGTAGATTCAC




129




0949-0968




coding






31575




AAGATCCGGATTCGATGGCG




130




0964-0983




coding






31744




CAGCATCAAGATCCGGATTC




131




0971-0990




coding






31438




GTTCACTTACACCAGCATCA




132




0983-1002




coding






31576




CAATCACCTGAATGTTCACT




133




0996-1015




coding






31745




CTGATCCAACCAATCACCTG




134




1006-1025




coding






31439




GAAACTGAATCCTGATCCAA




135




1017-1036




coding






31746




TGATCTGAAACTGAATCCTG




136




1023-1042




coding






31577




CTACACTAAACTGATCTGAA




137




1034-1053




coding






31747




CAACTTCAAATTCTACACTA




138




1046-1065




coding






31440




AGATTCAACTTCAAATTCTA




139




1051-1070




coding






31748




GAGTCGAGAGATTCAACTTC




140




1059-1078




coding






31578




TAATCTTCTGAGTCGAGAGA




141




1068-1087




coding






31749




CTAAGGCTATAATCTTCTGA




142




1077-1096




coding






31441




TTCTTCACTAAGGCTATAAT




143




1084-1103




coding






31750




TCTTGTCCTTCTTCACTAAG




144




1092-1111




coding






31579




CTGAGAGTTCTTGTCCTTCT




145




1100-1119




coding






31751




TTCATCTGAGAGTTCTTGTC




146




1105-1124




coding






31442




CCTCATCATCTTCATCTGAG




147




1115-1134




coding






31752




CTTGATATACCTCATCATCT




148




1124-1143




coding






31753




ATACACAGTAACTTGATATA




149




1135-1154




coding






31443




CTCTCCCCTGCCTGATACAC




150




1149-1168




coding






31580




GAATCTGTATCACTCTCCCC




151




1161-1180




coding






31754




TCTTCAAATGAATCTGTATC




152




1170-1189




coding






31444




AAATTTCAGGATCTTCTTCA




153




1184-1203




coding






31581




AGTCAGCTAAGGAAATTTCA




154




1196-1215




coding






31755




GCATTTCCAATAGTCAGCTA




155




1207-1226




coding






31445




CATTGCATGAAGTGCATTTC




156




1220-1239




coding






31756




TCATTTCATTGCATGAAGTG




157




1226-1245




coding






31582




CATCTGTTGCAATGTGATGG




158




1257-1276




coding






31757




GAAGGGCCCAACATCTGTTG




159




1268-1287




coding






31446




TTCTCACGAAGGGCCCAACA




160




1275-1294




coding






31758




GAAGCCAATTCTCACGAAGG




161




1283-1302




coding






31583




TATCTTCAGGAAGCCAATTC




162




1292-1311




coding






31759




CTTTCCCTTTATCTTCAGGA




163




1301-1320




coding






31447




TCCCCTTTATCTTTCCCTTT




164




1311-1330




coding






31584




CTTTCTCAGAGATTTCCCCT




165




1325-1344




coding






31760




CAGTTTGGCTTTCTCAGAGA




166




1333-1352




coding






31448




GTGTTGAGTTTTCCAGTTTG




167




1346-1365




coding






31585




CCTCTTCAGCTTGTGTTGAG




168




1358-1377




coding






31761




ACATCAAAGCCCTCTTCAGC




169




1368-1787




coding






31449




GAATCATTCACTATAGTTTT




170




1401-1420




coding






31586




ATGACTCTCTGGAATCATTC




171




1412-1431




coding






31762




CCTCAACACATGACTCTCTG




172




1421-1440




coding






31450




TTATCATCATTTTCCTCAAC




173




1434-1453




coding






31763




TAATTTTATCATCATTTTCC




174




1439-1458




coding






31587




GAAGCTTGTGTAATTTTATC




175




1449-1468




coding






31764




TGATTGTGAAGCTTGTGTAA




176




1456-1475




coding






31451




CACTTTCTTGTGATTGTGAA




177




1466-1485




coding






31588




GCTGAGAATAGTCTTCACTT




178




1481-1500




coding






31765




AGTTGATGGCTGAGAATAGT




179




1489-1508




coding






31452




TGCTACTAGAAGTTGATGGC




180




1499-1518




coding






31766




TAAATAATGCTACTAGAAGT




181




1506-1525




coding






31589




CTTGGCTGCTATAAATAATG




182




1517-1536




coding






31590




ATCTTCTTGGCTGCTATAAA




183




1522-1541




coding






31453




AACTCTTTCACATCTTCTTG




184




1533-1552




coding






31767




CCCTTTCAAACTCTTTCACA




185




1541-1560




coding






31591




GGGTTTCTTCCCTTTCAAAC




186




1550-1569




coding






31768




TCTTTGTCTTGGGTTTCTTC




187




1560-1579




coding






31454




CTCTCTTCTTTGTCTTGGGT




188




1566-1585




coding






31592




AACTAGATTC6ACACTCTCT




189




1580-1599




coding






31769




CAAGGTTCAATGGCATTAAG




190




1605-1624




coding






31455




TGACAAATCACACAAGGTTC




191




1617-1636




coding






31593




TCGACCTTGACAAATCACAC




192




1624-1643




coding






31594




ATGGACAATGCAACCATTTT




193




1648-1667




coding






31770




TGTTTTGCCATGGACAATGC




194




1657-1676




coding






31456




TAAGATGTCCTGTTTTGCCA




195




1667-1686




coding






31595




GCAGGCCATAAGATGTCCTG




196




1675-1694




coding






31596




ACATGTAAAGCAGGCCATAA




197




1684-1703




coding






31771




CTTTGCACATGTAAAGCAGG




198




1690-1709




coding






31457




TTTCTTTAGCTTCTTTGCAC




199




1702-1721




coding






31597




TTATTCCTTTTCTTTAGCTT




200




1710-1729




coding






31598




TGGGCAGGGCTTATTCCTTT




201




1720-1739




coding






31772




ACATACTGGGCAGGGCTTAT




202




1726-1745




coding






31458




TTGGTTGTCTACATACTGGG




203




1736-1755




coding






31599




TCATTTGAATTGGTTGTCTA




204




1745-1764




coding






31600




AAGTTAGCACAATCATTTGA




2os




1757-1776




coding






31601




TCTCTTATAGACAGGTCAAC




206




1787-1806




STOP






31459




AAATATATAATTCTCTTATA




207




1798-1817




3′ UTR






31602




AGTTAGAAATATATAATTCT




208




1804-1823




3′ UTR






31773




ATATAGTTAGAAATATATAA




209




1808-1827




3′ UTR






31603




CTAGGGTTATATAGTTAGAA




210




1816-1835




3′ UTR






31774




TAAATTCCTAGGGTTATATA




211




1823-1842




3′ UTR






31460




CAGGTTGTCTAAATTCCTAG




212




1832-1851




3′ UTR






31604




ATAAATTTCAGGTTGTCTAA




213




1840-1859




3′ UTR






31605




ATATATGTGAATAAATTTCA




214




1850-1869




3′ UTR






31606




CTTTGATATATGTGAATAAA




215




1855-1874




3′ UTR






31461




CATTTTCTCACTTTGATATA




216




1865-1884




3′ UTR






31607




ATTGAGGCATTTTCTCACTT




217




1872-1891




3′ UTR






31608




AATCTATGTGAATTGAGGCA




218




1883-1902




3′ UTR






31609




AGAAGAAATCTATGTGAATT




219




1889-1908




3′ UTR






31462




ATACTAAAGAGAAGAAATCT




220




1898-1917




3′ UTR






31610




GTCAATTATACTAAAGAGAA




221




1905-1924




3′ UTR






31775




TAGGTCAATTATACTAAAGA




222




1908-1927




3′ UTR






31611




CAAAGTAGGTCAATTATACT




223




1913-1932




3′ UTR






31776




CCACTACCAAAGTAGGTCAA




224




1920-1939




3′ UTR






31463




AGTATTCACTATTCCACTAC




225




1933-1952




3′ UTR






31612




TATACTAACTATTCACTATT




226




1940-1959




3′ UTR






31613




ACTCAAATTATACTAAGTAT




227




1948-1967




3′ UTR






31777




CATATTCAACTCAAATTATA




228




1956-1975




3′ UTR






31464




AAACCATCACCTACATATTC




229




1969-1988




3′ UTR






31778




CTCTAAACCATCACCTACAT




230




1973-1992




3′ UTR






31614




TACCACTTCCTCTAAACCAT




231




1982-2001




3′ UTR






31779




TTTAAAATTACCACTTCCTC




232




1990-2009




3′ UTR






31615




CAAATTATTTAAAATTACCA




233




1997-2016




3′ UTR






31465




CACACTACAAATTATTTAAA




234




2004-2023




3′ UTR






31616




CTCATTTAACACACACTACA




235




2015-2034




3′ UTR






31780




TACTTCTCATTTAACACACA




236




2020-2039




3′ UTR






31617




CATATACATATTTAACAAAA




237




2051-2070




3′ UTR






31466




TTAAATCTCATATACATATT




238




2059-2078




3′ UTR






31618




TAATAACTTACATTTAAATC




239




2072-2091




3′ UTR






31619




CTAACACACCAACACTCCCT




240




2103-2122




3′ UTR






31467




CACCCTCCCTAACACACCAA




241




2111-2130




3′ UTR






31781




CACTCCACCCTCCCTAACAC




242




2116-2135




3′ UTR






31620




CCCACTCCACTCCACCCTCC




243




2123-2142




3′ UTR






31782




CCCAACATCACCCACTCCAC




244




2133-2152




3′ UTR






31621




CCACTCACCCAACATCACCC




245




2140-2159




3′ UTR






31468




CACCTTCCACTCACCCAACA




246




2146-2165




3′ UTR






31783




CACCCCACACCTTCCACTCA




247




2153-2172




3′ UTR






31622




CACCACAATCCTCCCAACCC




248




2176-2195




3′ UTR






31623




ACCCTCACCCACCACAATCC




249




2185-2204




3′ UTR






31784




ATTCCCACCCTCACCCACCA




250




2191-2210




3′ UTR






31469




CAACCTAATTCCCACCCTCA




251




2198-2217




3′ UTR






31624




ACCCCAACCTAATTCCCACC




252




2202-2221




3′ UTR






31785




ATCACTCTACCCCAACCTAA




253




2210-2229




3′ UTR






31625




CACATCACTCTACCCCAACC




254




2213-2232




3′ UTR






31786




GGTGGCAGATGACTGTAGGC




255




2218-2237




3′ UTR






31626




AGGTGTGGTGGCAGATGACT




 21




2224-2243




3′ UTR






31470




AATTAGCCAGGTGTGGTGGC




256




2232-2251




3′ UTR






31627




GTCTCTACTAAAAGTACAAA




257




2253-2272




3′ UTR






31628




CGGTGAAACCCTGTCTCTAC




258




2265-2284




3′ UTR






31787




TGGCTAACACGGTGAAACCC




259




2274-2293




3′ UTR






31471




AGACCATCCTGGCTAACACG




260




2283-2302




3′ UTR






31788




GAGATCGAGACCATCCTGGC




261




2290-2309




3′ UTR






31629




GAGGTCAGGAGATCGAGACC




262




2298-2317




3′ UTR






31789




GCGGATCACGAGGTCAGGAG




263




2307-2326




3′ UTR






31472




AGGCCGAGGTGGGCGGATCA




264




2319-2338




3′ UTR






31790




TTTGGGAGGCCGAGGTGGGC




265




2325-2344




3′ UTR






31630




TCCCAGCACTTTGGGAGGCC




266




2334-2353




3′ UTR






31791




CCTGTAATCCCAGCACTTTG




267




2341-2360




3′ UTR






31631




GTGGCTCATGCCTGTAATCC




268




2351-2370




3′ UTR













1


All deoxy cytosines residues are 5-methyl-cytosines; all linkages are phosphorothioate linkages.












2


Co-ordinates from Genbank Accession No. Z12020, locus name “HSP53ASSG”, SEQ ID NO: 1.





















TABLE 11











Nucleotide Sequences of Human mdm2






Chimeric (deoxy gapped) Oligonucleotides















ISIS




NUCLEOTIDE SEQUENCE


1






SEQ ID




TARGET GENE NUCLEOTIDE




GENE TARGET






NO.




(5′ -> 3′)




NO:




CO-ORDINATES


2






REGION









31393




CAGCCAAGCTCGCGCGGTGC




 3




0001-0020




5′ UTR






31712




AAGCAGCCAAGCTCGCGCGG




 33




0004-0023




5′ UTR






31552




CAGGCCCCAGAAGCAGCCAA




 34




0014-0033




5′ UTR






31713




GCCACACAGGCCCCAGAAGC




 35




0020-0039




5′ UTR






31394




ACACACAGGGCCACACAGGC




 36




0029-0048




5′ UTR






31714




TTCCGACACACAGGGCCACA




 37




0034-0053




5′ UTR






31553




GCTCCATCTTTCCGACACAC




 38




0043-0062




5′ UTR






31715




GCTTCTTGCTCCATCTTTCC




 39




0050-0069




5′ UTR






31395




CCCTCGGGCTCGGCTTCTTG




 40




0062-0081




5′ UTR






31716




GCGGCCGCCCCTCGGGCTCG




 41




0070-0089




5′ UTR






31554




AAGCAGCAGGATCTCGGTCA




 42




0098-0107




5′ UTR






31717




GCTGCGAAAGCAGCAGGATC




 43




0105-0124




5′ UTR






31396




TGCTCCTGGCTGCGAAAGCA




 44




0113-0132




5′ UTR






31718




GGGACGGTGCTCCTGGCTGC




 45




0120-0139




5′ UTR






31555




ACTGGGCGCTCGTACGCACT




 46




0150-0169




5′ UTR






31719




GCCAGGGCACTGGGCGCTCG




 47




0158-0177




5′ UTR






31397




TCTCCGGGCCAGGGCACTGG




 48




0165-0184




5′ UTR






31720




TCATTCCACTCTCCGGGCCA




 49




0174-0193




5′ UTR






31556




GGAAGCACGACGCCCTGGGC




 50




0202-0221




5′ UTR






31721




TACTGCGGAAGCACGACGCC




 51




0208-0227




5′ UTR






31398




GGGACTGACTACTGCGGAAG




 52




0217-0236




5′ UTR






31722




TCAAGACTCCCCAGTTTCCT




 53




0242-0261




5′ UTR






31557




CCTGCTCCTCACCATCCGGG




 54




0289-0308




5′ UTR






31399




TTTGCCTGCTCCTCACCATC




 55




0293-0312




AUG






31400




ATTTGCCTGCTCCTCACCAT




 56




0294-0313




AUG






31401




CATTTGCCTGCTCCTCACCA




 9




0295-0314




AUG






31402




ACATTTGCCTGCTCCTCACC




 57




0296-0315




AUG






31403




CACATTTGCCTGCTCCTCAC




 58




0297-0316




AUG






31404




GCACATTTGCCTGCTCCTCA




 59




0298-0317




AUG






31405




TGCACATTTGCCTGCTCCTC




 60




0299-0318




AUG






31406




TTGCACATTTGCCTGCTCCT




 61




0300-0319




AUG






31407




ATTGCACATTTGCCTGCTCC




 62




0301-0320




AUG






31408




TATTGCACATTTGCCTGCTC




 63




0302-0321




AUG






31409




GTATTGCACATTTGCCTGCT




 10




0303-0322




AUG






31410




GGTATTGCACATTTGCCTGC




 64




0304-0323




AUG






31411




TGGTATTGCACATTTGCCTG




 65




0305-0324




AUG






31412




TTGGTATTGCACATTTGCCT




 66




0306-0325




AUG






31413




GTTGGTATTGCACATTTGCC




 67




0307-0326




AUG






31414




TGTTGGTATTGCACATTTGC




 68




0308-0327




AUG






31415




ATGTTGGTATTGCACATTTG




 69




0309-0328




AUG






31416




CATGTTGGTATTGCACATTT




 70




0310-0329




AUG






31417




ACATGTTGGTATTGCACATT




 71




0311-0330




AUG






31418




GACATGTTGGTATTGCACAT




 72




0312-0331




AUG






31419




AGACATGTTGGTATTGCACA




 73




0313-0332




AUG






31420




CAGACATGTTGGTATTGCAC




 74




0314-0333




AUG






31558




CAGTAGGTACAGACATGTTG




 75




0323-0342




coding






31723




TACAGCACCATCAGTAGGTA




 76




0334-0353




coding






31421




GGAATCTGTGAGGTGGTTAC




 77




0351-0370




coding






31559




TTCCGAAGCTGGAATCTGTG




 78




0361-0380




coding






31724




AGGGTCTCTTGTTCCGAAGC




 79




0372-0391




coding






31422




GCTTTGGTCTAACCAGGGTC




 80




0386-0405




coding






31560




GCAATGGCTTTGGTCTAACC




 81




0392-0411




coding






31725




TAACTTCAAAAGCAATGGCT




 82




0403-0422




coding






31423




GTGCACCAACAGACTTTAAT




 83




0422-0441




coding






31561




ACCTCTTTCATAGTATAAGT




 84




0450-0469




coding






31726




ATAATATACTGGCCAAGATA




 85




0477-0496




coding






31424




TAATCGTTTAGTCATAATAT




 86




0490-0509




coding






31727




ATCATATAATCGTTTAGTCA




 87




0496-0515




coding






31562




GCTTCTCATCATATAATCGT




 88




0503-0522




coding






31728




CAATATGTTGTTGCTTCTCA




 89




0515-0534




coding






31425




GAACAATATACAATATGTTG




 90




0525-0544




coding






31729




TCATTTGAACAATATACAAT




 91




0531-0550




coding






31563




TAGAAGATCATTTGAACAAT




 92




0538-0557




coding






31730




AACAAATCTCCTAGAAGATC




 93




0549-0568




coding






31426




TGGCACGCCAAACAAATCTC




 94




0559-0578




coding






31731




AGAAGCTTGGCACGCCAAAC




 95




0566-0585




coding






31564




CTTTCACAGAGAAGCTTGGC




 96




0575-0594




coding






31732




TTTTCCTGTGCTCTTTCACA




 97




0587-0606




coding






31427




TATATATTTTCCTGTGCTCT




 98




0593-0612




coding






31733




ATCATGGTATATATTTTCCT




 99




0600-0619




coding






31565




TTCCTGTAGATCATGGTATA




100




0609-0628




coding






31734




TACTACCAAGTTCCTGTAGA




101




0619-0638




coding






31428




TTCCTGCTGATTGACTACTA




102




0634-0653




coding






31566




TGAGTCCGATGATTCCTGCT




103




0646-0665




coding






31735




CAGATGTACCTGAGTCCGAT




104




0656-0675




coding






31429




CTGTTCTCACTCACAGATGT




105




0669-0688




coding






31567




TTCAAGGTGACACCTGTTCT




106




0682-0701




coding






31736




ACTCCCACCTTCAAGGTGAC




107




0691-0710




coding






31430




GGTCCTTTTGATCACTCCCA




108




0704-0723




coding






31568




AAGCTCTTGTACAAGGTCCT




109




0718-0737




coding






31737




CTCTTCCTGAAGCTCTTGTA




110




0727-0746




coding






31431




AAGATGAAGGTTTCTCTTCC




111




0740-0759




coding






31569




AAACCAAATGTGAAGATGAA




112




0752-0771




coding






31738




ATGGTCTAGAAACCAAATGT




113




0761-0780




coding






31432




CTAGATGAGGTAGATGGTCT




114




0774-0793




coding






31570




AATTGCTCTCCTTCTAGATG




115




0787-0806




coding






31739




TCTGTCTCACTAATTGCTCT




116




0798-0817




coding






31433




TCTGAATTTTCTTCTGTCTC




117




0810-0829




coding






31571




CACCAGATAATTCATCTGAA




118




0824-0843




coding






31740




TTTGTCGTTCACCAGATAAT




119




0833-0852




coding






31434




GTGGCGTTTTCTTTGTCGTT




120




0844-0863




coding






31572




TACTATCAGATTTGTGGCGT




121




0857-0876




coding






31741




GAAAGGGAAATACTATCAGA




122




0867-0336




coding






31435




GCTTTCATCAAAGGAAAGGG




123




0880-0899




coding






31573




TACACACAGAGCCAGGCTTT




124




0395-0914




coding






31742




CTCCCTTATTACACACAGAG




125




0904-0923




coding






31436




TCACAACATATCTCCCTTAT




126




0915-0934




coding






31574




CTACTGCTTCTTTCACAACA




127




0927-0946




coding






31743




GATTCACTGCTACTGCTTCT




128




0936-0955




coding






31437




TGGCGTCCCTGTAGATTCAC




129




0949-0968




coding






31575




AAGATCCGGATTCGATGGCG




130




0964-0983




coding






31744




CAGCATCAAGATCCGGATTC




131




0971-0990




coding






31438




GTTCACTTACACCAGCATCA




132




0983-1002




coding






31576




CAATCACCTGAATGTTCACT




133




0996-1015




ccding






31745




CTGATCCAACCAATCACCTG




134




1006-1025




coding






31439




GAAACTGAATCCTGATCCAA




135




1017-1036




coding






31746




TGATCTGAAACTGAATCCTG




136




1023-1042




coding






31577




CTACACTAAACTGATCTGAA




137




1034-1053




coding






31747




CAACTTCAAATTCTACACTA




138




1046-1065




coding






31440




AGATTCAACTTCAAATTCTA




139




1051-1070




coding






31748




GAGTCGAGAGATTCAACTTC




140




1059-1078




coding






31578




TAATCTTCTGAGTCGAGAGA




141




1068-1087




coding






31749




CTAAGGCTATAATCTTCTGA




142




1077-1096




coding






31441




TTCTTCACTAAGGCTATAAT




143




1084-1103




coding






31750




TCTTGTCCTTCTTCACTAAG




144




1092-1111




ccding






31579




CTGAGAGTTCTTGTCCTTCT




145




1100-1119




coding






31751




TTCATCTGAGAGTTCTTGTC




146




1105-1124




coding






31442




CCTCATCATCTTCATCTGAG




147




1115-1134




coding






31752




CTTGATATACCTCATCATCT




143




1124-1143




coding






31753




ATACACAGTAACTTGATATA




149




1135-1154




coding






31443




CTCTCCCCTGCCTGATACAC




150




1149-1168




coding






31580




GAATCTGTATCACTCTCCCC




151




1161-1180




coding






31754




TCTTCAAATGAATCTGTATC




152




1170-1189




coding






31444




AAATTTCAGGATCTTCTTCA




153




1184-1203




coding






31531




AGTCAGCTAAGGAAATTTCA




154




1196-1215




coding






31755




GCATTTCCAATAGTCAGCTA




155




1207-1226




coding






31445




CATTGCATGAAGTGCATTTC




156




1220-1239




coding






31756




TCATTTCATTGCATGAAGTG




157




1226-1245




coding






31582




CATCTGTTGCAATGTGATGG




158




1257-1276




coding






31757




GAAGGGCCCAACATCTGTTG




159




1268-1237




coding






31446




TTCTCACGAAGGGCCCAACA




160




1275-1294




coding






31758




GAAGCCAATTCTCACGAAGG




161




1283-1302




coding






31583




TATCTTCAGGAAGCCAATTC




162




1292-1311




coding






31759




CTTTCCCTTTATCTTCAGGA




163




1301-1320




coding






31447




TCCCCTTTATCTTTCCCTTT




164




1311-1330




coding






31584




CTTTCTCAGAGATTTCCCCT




165




1325-1344




coding






31760




CAGTTTGGCTTTCTCAGAGA




166




1333-1352




coding






31448




GTGTTGAGTTTTCCAGTTTG




167




1346-1365




coding






31585




CCTCTTCAGCTTGTGTTGAG




168




1358-1377




coding






31761




ACATCAAAGCCCTCTTCAGC




169




1368-1787




coding






31449




GAATCATTCACTATAGTTTT




170




1401-1420




coding






31586




ATGACTCTCTGGAATCATTC




171




1412-1431




coding






31762




CCTCAACACATGACTCTCTG




172




1421-1440




coding






31450




TTATCATCATTTTCCTCAAC




173




1434-1453




coding






31763




TAATTTTATCATCATTTTCC




174




1439-1458




coding






31587




GAAGCTTGTGTAATTTTATC




175




1449-1468




coding






31764




TGATTGTGAAGCTTGTGTAA




176




1456-1475




coding






31451




CACTTTCTTGTGATTGTGAA




177




1466-1485




coding






31588




GCTGAGAATAGTCTTCACTT




178




1481-1500




coding






31765




AGTTGATGGCTGAGAATAGT




179




14S9-150S




coding






31452




TGCTACTAGAAGTTGATGGC




180




1499-1518




coding






31766




TAAATAATGCTACTAGAAGT




181




1506-1525




coding






31589




CTTGGCTGCTATAAATAATG




182




1517-1536




coding






31590




ATCTTCTTGGCTGCTATAAA




183




1522-1541




coding






31453




AACTCTTTCACATCTTCTTG




1S4




1533-1552




coding






31767




CCCTTTCAAACTCTTTCACA




185




1541-1560




coding






31591




GGGTTTCTTCCCTTTCAAAC




186




1550-1569




coding






31768




TCTTTGTCTTGGGTTTCTTC




187




1560-1579




coding






31454




CTCTCTTCTTTGTCTTGGGT




188




1566-1585




coding






31592




AACTAGATTCCACACTCTCT




189




1580-1599




coding






31769




CAAGGTTCAATGGCATTAAG




190




1605-1624




coding






31455




TGACAAATCACACAAGGTTC




191




1617-1636




coding






31593




TCGACCTTGACAAATCACAC




192




1624-1643




coding






31594




ATGGACAATGCAACCATTTT




193




1648-1667




coding






31770




TGTTTTGCCATGGACAATGC




i94




1657-1676




coding






31456




TAAGATGTCCTGTTTTGCCA




195




1667-1686




coding






31595




GCAGGCCATAAGATGTCCTG




196




1675-1694




coding






31596




ACATGTAAAGCAGGCCATAA




197




1684-1703




coding






31771




CTTTGCACATGTAAAGCAGG




198




1690-1709




coding






31457




TTTCTTTAGCTTCTTTGCAC




199




1702-1721




coding






31597




TTATTCCTTTTCTTTAGCTT




200




1710-1729




coding






31598




TGGGCAGGGCTTATTCCTTT




201




1720-1739




coding






31772




ACATACTGGGCAGGGCTTAT




202




1726-1745




coding






31458




TTGGTTGTCTACATACTGGG




203




1736-1755




coding






31599




TCATTTGAATTGGTTGTCTA




204




1745-1764




coding






31600




AAGTTAGCACAATCATTTGA




205




1757-1776




coding






31601




TCTCTTATAGACAGGTCAAC




206




1787-1806




STOP






31459




AAATATATAATTCTCTTATA




207




1798-1817




3′ UTR






31602




AGTTAGAAATATATAATTCT




208




1804-1823




3′ UTR






31773




ATATAGTTAGAAATATATAA




209




1808-1827




3′ UTR






31603




CTAGGGTTATATAGTTAGAA




210




1816-1835




3′ UTR






31774




TAAATTCCTAGGGTTATATA




211




1823-1842




3′ UTR






31460




CAGGTTGTCTAAATTCCTAG




212




1832-1851




3′ UTR






31604




ATAAATTTCAGGTTGTCTAA




213




1340-1359




3′ UTR






31605




ATATATGTGAATAAATTTCA




214




1850-1869




3′ UTR






31606




CTTTGATATATGTGAATAAA




215




1855-1874




3′ UTR






31461




CATTTTCTCACTTTGATATA




216




1865-1884




3′ UTR






31607




ATTGAGGCATTTTCTCACTT




217




1872-1891




3′ UTR






31608




AATCTATGTGAATTGAGGCA




218




1883-1902




3′ UTR






31609




AGAAGAAATCTATGTGAATT




219




1889-1908




3′ UTR






31462




ATACTAAAGAGAAGAAATCT




220




1898-1917




3′ UTR






31610




GTCAATTATACTAAAGAGAA




221




1905-1924




3′ UTR






31775




TAGGTCAATTATACTAAAGA




222




1908-1927




3′ UTR






31611




CAAAGTAGGTCAATTATACT




223




1913-1932




3′ UTR






31776




CCACTACCAAAGTAGGTCAA




224




1920-1939




3′ UTR






31463




AGTATTCACTATTCCACTAC




225




1933-1952




3′ UTR






31612




TATAGTAAGTATTCACTATT




226




1940-1959




3′ UTR






31613




AGTCAAATTATAGTAAGTAT




227




1948-1967




3′ UTR






31777




CATATTCAAGTCAAATTATA




228




1956-1975




3′ UTR






31464




AAAGGATGAGCTACATATTC




229




1969-1988




3′ UTR






31778




GTGTAAAGGATGAGCTACAT




230




1973-1992




3′ UTR






31614




TAGGAGTTGGTGTAAAGGAT




231




1982-2001




3′ UTR






31779




TTTAAAATTAGGAGTTGGTG




232




1990-2009




3′ UTR






31615




GAAATTATTTAAAATTAGGA




233




1997-2016




3′ UTR






31465




CAGAGTAGAAATTATTTAAA




234




2004-2023




3′ UTR






31616




CTCATTTAAGACAGAGTAGA




235




2015-2034




3′ UTR






31780




TACTTCTCATTTAAGACAGA




236




2020-2039




3′ UTR






31617




CATATACATATTTAAGAAAA




237




2051-2070




3′ UTR






31466




TTAAATGTCATATACATATT




238




2059-2078




3′ UTR






31618




TAATAAGTTACATTTAAATG




239




2072-2091




3′ UTR






31619




GTAACAGAGCAAGACTCGGT




240




2103-2122




3′ UTR






31467




CAGCCTGGGTAACAGAGCAA




241




2111-2130




3′ UTR






31781




CACTCCAGCCTGGGTAACAG




242




2116-2135




3′ UTR






31620




CCCACTGCACTCCAGCCTGG




243




2123-2142




3′ UTR






31782




GCCAAGATCACCCACTGCAC




244




2133-2152




3′ UTR






31621




GCAGTGAGCCAAGATCACCC




245




2140-2159




3′ UTR






31468




GAGCTTGCAGTGAGCCAAGA




246




2146-2165




3′ UTR






31783




GAGGGCAGAGCTTGCAGTGA




247




2153-2172




3′ UTR






31622




CAGGAGAATGGTGCGAACCC




248




2176-2195




3′ UTR






31623




AGGCTGAGGCAGGAGAATGG




249




2185-2204




3′ UTR






31784




ATTGGGAGGCTGAGGCAGGA




250




2191-2210




3′ UTR






31469




CAAGCTAATTGGGAGGCTGA




251




2198-2217




3′ UTR






31624




AGGCCAAGCTAATTGGGAGG




252




2202-2221




3′ UTR






31785




ATGACTGTAGGCCAAGCTAA




253




2210-2229




3′ UTR






31625




CAGATGACTGTAGGCCAAGC




254




2213-2232




3′ UTR






31786




GGTGGCAGATGACTGTAGGC




255




2218-2237




3′ UTR






31626




AGGTGTGGTGGCAGATGACT




 21




2224-2243




3′ UTR






31470




AATTAGCCAGGTGTGGTGGC




256




2232-2251




3′ UTR






31627




GTCTCTACTAAAAGTACAAA




257




2253-2272




3′ UTR






31628




CGGTGAAACCCTGTCTCTAC




258




2265-2284




3′ UTR






31787




TGGCTAACACGGTGAAACCC




259




2274-2293




3′ UTR






31471




AGACCATCCTGGCTAACACG




260




2283-2302




3′ UTR






31788




GAGATCGAGACCATCCTGGC




261




2290-2309




3′ UTR






31629




GAGGTCAGGAGATCGAGACC




262




2298-2317




3′ UTR






31789




GCGGATCACGAGGTCAGGAG




263




2307-2326




3′ UTR






31472




AGGCCGAGGTGGGCGGATCA




264




2319-2338




3′ UTR






31790




TTTGGGAGGCCGAGGTGGGC




265




2325-2344




3′ UTR






31630




TCCCAGCACTTTGGGAGGCC




266




2334-2353




3′ UTR






31791




CCTGTAATCCCAGCACTTTG




267




2341-2360




3′ UTR






31631




GTGGCTCATGCCTGTAATCC




268




2351-2370




3′ UTR













1


All deoxy cytosines and 2′-MOE cytosine residues are 5-methyl-cytosines; all linkages are phosphorothioate linkages.












2


Co-ordinates from Genbank Accession No. Z12020, locus name “HSP53ASSG”, SEQ ID NO: 1.













Oligonucleotide activity was assayed by quantitation of mdm2 mRNA levels by real-time PCR (RT-PCR) using the ABI PRISM™ 7700 Sequence Detection System (PE-Applied Biosystems, Foster City, Calif.) according to manufacturer's instructions. This is a closed-tube, non-gel-based, fluorescence detection system which allows high-throughput quantitation of polymerase chain reaction (PCR) products in real-time. As opposed to standard PCR, in which amplification products are quantitated after the PCR is completed, products in RT-PCR are quantitated as they accumulate. This is accomplished by including in the PCR reaction an oligonucleotide probe that anneals specifically between the forward and reverse PCR primers, and contains two fluorescent dyes. The primers and probes used were:




Forward: 5′-GGCAAATGTGCAATACCAACA-3′ (SEQ ID NO. 269)




Reverse: 5′-TGCACCAACAGACTTTAATAACTTCA-3′ (SEQ ID NO. 270)




Probe: 5′-FAM-CCACCTCACAGATTCCAGCTTCGGA-TAMRA-3′ (SEQ ID NO. 271)




A reporter dye (e.g., JOE or FAM, PE-Applied Biosystems, Foster City, Calif.) was attached to the 5′ end of the probe and a quencher dye (e.g., TAMRA, PE-Applied Biosystems, Foster City, Calif.) was attached to the 3′ end of the probe. When the probe and dyes are intact, reporter dye emission is quenched by the proximity of the 3′ quencher dye. During amplification, annealing of the probe to the target sequence creates a substrate that can be cleaved by the 5′-exonuclease activity of Taq polymerase. During the extension phase of the PCR amplification cycle, cleavage of the probe by Taq polymerase releases the reporter dye from the remainder of the probe (and hence from the quencher moiety) and a sequence-specific fluorescent signal is generated. With each cycle, additional reporter dye molecules are cleaved from their respective probes, and the fluorescence intensity is monitored at regular (six-second) intervals by laser optics built into the ABI PRISM™ 7700 Sequence Detection System. In each assay, a series of parallel reactions containing serial dilutions of mRNA from untreated control samples generates a standard curve that is used to quantitate the percent inhibition after antisense oligonucleotide treatment of test samples.




RT-PCR reagents were obtained from PE-Applied Biosystems, Foster City, Calif. RT-PCR reactions were carried out by adding 25 μl PCR cocktail (1× TAQMAN® buffer A, 5.5 mM MgCl


2


, 300 μM each of dATP, dCTP and dGTP, 600 μM of dUTP, 100 nM each of forward primer, reverse primer, and probe, 20 U RNAse inhibitor, 1.25 units AMPLITAQ GOLD®, and 12.5 U MuLV reverse transcriptase) to 96 well plates containing 25 μl poly(A) mRNA solution. The RT reaction was carried out by incubation for 30 minutes at 48° C. Following a 10 minute incubation at 95° C. to activate the AMPLITAQ GOLD®, 40 cycles of a two-step PCR protocol were carried out: 95° C. for 15 seconds (denaturation) followed by 60° C. for 1.5 minutes (annealing/extension).




Results are shown in Table 12. Oligonucleotides 31394 (SEQ ID NO: 36), 31398 (SEQ ID NO: 52), 31400 (SEQ ID NO: 56), 31402 (SEQ ID NO: 57), 31405 (SEQ ID NO: 60), 31406 (SEQ ID NO: 61), 31415 (SEQ ID NO: 69), 31416 (SEQ ID NO: 70), 31418 (SEQ ID NO: 72), 31434 (SEQ ID NO: 60), 31436 (SEQ ID NO: 126), 31446 (SEQ ID NO: 160), 31451 (SEQ ID NO: 177), 31452 (SEQ ID NO: 180), 31456 (SEQ ID NO: 195), 31461 (SEQ ID NO: 216), 31468 (SEQ ID NO: 246), 31469 (SEQ ID NO: 251), 31471 (SEQ ID NO: 260), and 31472 (SEQ ID NO: 264) gave at least approximately 50% reduction of mdm2 mRNA levels.












TABLE 12











Activities of Phosphorothioate Oligodeoxynucleotides






Targeted to Human mdm2
















SEQ




GENE








ISIS




ID




TARGET




% mRNA




% mRNA






No:




NO:




REGION




EXPRESSION




INHIBITION









LIPOFECTIN ™














 100%




 0%






only






31393




3




5′ UTR




 59%




41%






31394




36




5′ UTR




 27%




73%






31395




40




5′ UTR




 96%




 4%






31396




44




5′ UTR




 99%




 1%






31397




48




5′ UTR




 76%




24%






31398




52




5′ UTR




 51%




49%






31399




55




AUG




 138%











31400




56




AUG




 22%




78%






31401




9




AUG




 69%




31%






31402




57




AUG




 47%




53%






31403




58




AUG




 77%




23%






31404




59




AUG




 60%




40%






31405




60




AUG




 35%




65%






31406




61




AUG




 45%




55%






31407




62




AUG




 65%




35%






31408




63




AUG




 71%




29%






31409




10




AUG




 849%











31410




64




AUG




 79%




21%






31411




65




AUG




 67%




33%






31412




66




AUG




 99%




 1%






31413




67




AUG




 68%




32%






31414




68




AUG




 64%




36%






31415




69




AUG




 48%




52%






31416




70




AUG




 36%




64%






31417




71




AUG




 77%




23%






31418




72




AUG




 53%




47%






31419




73




AUG




 122%











31420




74




AUG




 57%




43%






31421




77




coding




 111%











31422




80




coding




 85%




15%






31423




83




coding




 126%











31424




86




coding




 70%




30%






31425




90




coding




 95%




 5%






31426




94




coding




 69%




31%






31427




98




coding




9465%











31428




102




coding




 81%




19%






31429




105




coding




 138%











31430




108




coding




 114%











31431




111




coding




 77%




23%






31432




114




coding




 676%











31433




117




coding




 145%











31434




120




coding




 40%




60%






31435




123




coding




 193%











31436




126




coding




 49%




51%






31437




129




coding




 146%











31438




132




coding




 76%




24%






31439




135




coding




 104%











31440




139




coding




 95%




 5%






31441




143




coding




 324%











31442




147




coding




1840%











31443




150




coding




 369%











31444




153




coding




 193%











31445




156




coding




 106%











31446




160




coding




 29%




71%






31447




164




coding




 82%




18%






31448




167




coding




 117%











31449




170




coding




1769%











31450




173




coding




 84%




16%






31451




177




coding




 49%




51%






31452




180




coding




 33%




67%






31453




184




coding




 59%




41%






31454




188




coding




 171%











31455




191




coding




 61%




39%






31456




195




coding




 42%




58%






31457




199




coding




 70%




30%






31458




203




coding




 60%




40%






31459




207




3′ UTR




 149%











31460




212




3′ UTR




 71%




29%






31461




216




3′ UTR




 52%




48%






31462




220




3′ UTR




1113%











31463




225




3′ UTR




 78%




22%






31464




229




3′ UTR




 112%











31465




234




3′ UTR




 66%




34%






31466




238




3′ UTR




 212%











31467




241




3′ UTR




 77%




23%






31468




246




3′ UTR




 17%




83%






31469




251




3′ UTR




 36%




64%






31470




256




3′ UTR




 60%




40%






31471




260




3′ UTR




 43%




57%






31472




264




3′ UTR




 35%




65%














Example 10




Effect of mdm2 Antisense Oligonucleotides on the Growth of Human A549 Lung Tumor Cells in Nude Mice




200 μl of A549 cells (5×10


6


cells) are implanted subcutaneously in the inner thigh of nude mice. mdm2 antisense oligonucleotides are administered twice weekly for four weeks, beginning one week following tumor cell inoculation. Oligonucleotides are formulated with cationic lipids (LIPOFECTIN™) and given subcutaneously in the vicinity of the tumor. Oligonucleotide dosage was 5 mg/kg with 60 mg/kg cationic lipid. Tumor size is recorded weekly.




Activity of the oligonucleotides is measured by reduction in tumor size compared to controls.




Example 11




U-87 Human Glioblastoma Cell Culture and Subcutaneous Xenografts into Nude Mice




The U-87 human glioblastoma cell line is obtained from the ATCC (Manassas, Va.) and maintained in Iscove's DMEM medium supplemented with heat-inactivated 10% fetal calf serum (Yazaki, T., et al.,


Mol. Pharmacol


., 1996, 50, 236-242). Nude mice are injected subcutaneously with 2×10


7


cells. Mice are injected intraperitoneally with oligonucleotide at dosages of either 2 mg/kg or 20 mg/kg for 21 consecutive days beginning 7 days after xenografts were implanted. Tumor volumes are measured on days 14, 21, 24, 31 and 35. Activity is measure by a reduced tumor volume compared to saline or sense oligonucleotide controls.




Example 12




Intracerebral U-87 Glioblastoma Xenografts into Nude Mice




U-87 cells are implanted in the brains of nude mice (Yazaki, T., et al.,


Mol. Pharmacol


., 1996, 50, 236-242). Mice are treated via continuous intraperitoneal administration of antisense oligonucleotide (20 mg/kg), control sense oligonucleotide (20 mg/kg) or saline beginning on day 7 after xenograft implantation. Activity of the oligonucleotide is measured by an increased survival time compared to controls.







271





2372 base pairs


Nucleic Acid


Single


Unknown



No



unknown






J.D.
Kinzler,K.W.
Meltzer,P.S.
George,D.L.
Vogelstein,B.




Oliner






Amplification of a gene encoding a
p53-associated protein in human sarcomas




Nature


358


6381


80-83


02-JUL-1992



1
GCACCGCGCG AGCTTGGCTG CTTCTGGGGC CTGTGTGGCC CTGTGTGTCG 50
GAAAGATGGA GCAAGAAGCC GAGCCCGAGG GGCGGCCGCG ACCCCTCTGA 100
CCGAGATCCT GCTGCTTTCG CAGCCAGGAG CACCGTCCCT CCCCGGATTA 150
GTGCGTACGA GCGCCCAGTG CCCTGGCCCG GAGAGTGGAA TGATCCCCGA 200
GGCCCAGGGC GTCGTGCTTC CGCAGTAGTC AGTCCCCGTG AAGGAAACTG 250
GGGAGTCTTG AGGGACCCCC GACTCCAAGC GCGAAAACCC CGGATGGTGA 300
GGAGCAGGCA AATGTGCAAT ACCAACATGT CTGTACCTAC TGATGGTGCT 350
GTAACCACCT CACAGATTCC AGCTTCGGAA CAAGAGACCC TGGTTAGACC 400
AAAGCCATTG CTTTTGAAGT TATTAAAGTC TGTTGGTGCA CAAAAAGACA 450
CTTATACTAT GAAAGAGGTT CTTTTTTATC TTGGCCAGTA TATTATGACT 500
AAACGATTAT ATGATGAGAA GCAACAACAT ATTGTATATT GTTCAAATGA 550
TCTTCTAGGA GATTTGTTTG GCGTGCCAAG CTTCTCTGTG AAAGAGCACA 600
GGAAAATATA TACCATGATC TACAGGAACT TGGTAGTAGT CAATCAGCAG 650
GAATCATCGG ACTCAGGTAC ATCTGTGAGT GAGAACAGGT GTCACCTTGA 700
AGGTGGGAGT GATCAAAAGG ACCTTGTACA AGAGCTTCAG GAAGAGAAAC 750
CTTCATCTTC ACATTTGGTT TCTAGACCAT CTACCTCATC TAGAAGGAGA 800
GCAATTAGTG AGACAGAAGA AAATTCAGAT GAATTATCTG GTGAACGACA 850
AAGAAAACGC CACAAATCTG ATAGTATTTC CCTTTCCTTT GATGAAAGCC 900
TGGCTCTGTG TGTAATAAGG GAGATATGTT GTGAAAGAAG CAGTAGCAGT 950
GAATCTACAG GGACGCCATC GAATCCGGAT CTTGATGCTG GTGTAAGTGA 1000
ACATTCAGGT GATTGGTTGG ATCAGGATTC AGTTTCAGAT CAGTTTAGTG 1050
TAGAATTTGA AGTTGAATCT CTCGACTCAG AAGATTATAG CCTTAGTGAA 1100
GAAGGACAAG AACTCTCAGA TGAAGATGAT GAGGTATATC AAGTTACTGT 1150
GTATCAGGCA GGGGAGAGTG ATACAGATTC ATTTGAAGAA GATCCTGAAA 1200
TTTCCTTAGC TGACTATTGG AAATGCACTT CATGCAATGA AATGAATCCC 1250
CCCCTTCCAT CACATTGCAA CAGATGTTGG GCCCTTCGTG AGAATTGGCT 1300
TCCTGAAGAT AAAGGGAAAG ATAAAGGGGA AATCTCTGAG AAAGCCAAAC 1350
TGGAAAACTC AACACAAGCT GAAGAGGGCT TTGATGTTCC TGATTGTAAA 1400
AAAACTATAG TGAATGATTC CAGAGAGTCA TGTGTTGAGG AAAATGATGA 1450
TAAAATTACA CAAGCTTCAC AATCACAAGA AAGTGAAGAC TATTCTCAGC 1500
CATCAACTTC TAGTAGCATT ATTTATAGCA GCCAAGAAGA TGTGAAAGAG 1550
TTTGAAAGGG AAGAAACCCA AGACAAAGAA GAGAGTGTGG AATCTAGTTT 1600
GCCCCTTAAT GCCATTGAAC CTTGTGTGAT TTGTCAAGGT CGACCTAAAA 1650
ATGGTTGCAT TGTCCATGGC AAAACAGGAC ATCTTATGGC CTGCTTTACA 1700
TGTGCAAAGA AGCTAAAGAA AAGGAATAAG CCCTGCCCAG TATGTAGACA 1750
ACCAATTCAA ATGATTGTGC TAACTTATTT CCCCTAGTTG ACCTGTCTAT 1800
AAGAGAATTA TATATTTCTA ACTATATAAC CCTAGGAATT TAGACAACCT 1850
GAAATTTATT CACATATATC AAAGTGAGAA AATGCCTCAA TTCACATAGA 1900
TTTCTTCTCT TTAGTATAAT TGACCTACTT TGGTAGTGGA ATAGTGAATA 1950
CTTACTATAA TTTGACTTGA ATATGTAGCT CATCCTTTAC ACCAACTCCT 2000
AATTTTAAAT AATTTCTACT CTGTCTTAAA TGAGAAGTAC TTGGTTTTTT 2050
TTTTCTTAAA TATGTATATG ACATTTAAAT GTAACTTATT ATTTTTTTTG 2100
AGACCGAGTC TTGCTCTGTT ACCCAGGCTG GAGTGCAGTG GGTGATCTTG 2150
GCTCACTGCA AGCTCTGCCC TCCCCGGGTT CGCACCATTC TCCTGCCTCA 2200
GCCTCCCAAT TAGCTTGGCC TACAGTCATC TGCCACCACA CCTGGCTAAT 2250
TTTTTGTACT TTTAGTAGAG ACAGGGTTTC ACCGTGTTAG CCAGGATGGT 2300
CTCGATCTCC TGACCTCGTG ATCCGCCCAC CTCGGCCTCC CAAAGTGCTG 2350
GGATTACAGG CATGAGCCAC CG 2372






500 base pairs


Nucleic Acid


Single


Unknown



No



unknown






A.
Flusberg, D.
Haupt, Y.
Barak, Y.
Oren, M.




Zauberman






A functional p53-responsive intronic
promoter is contained within the human mdm2 gene




Nucleic Acids Res.


23


14


2584-2592


25-JUL-1995



2
GGCTGCGGGC CCCTGCGGCG CGGGAGGTCC GGATGATCGC AGGTGCCTGT 50
CGGGTCACTA GTGTGAACGC TGCGCGTAGT CTGGGCGGGA TTGGGCCGGT 100
TCAGTGGGCA GGTTGACTCA GCTTTTCCTC TTGAGCTGGT CAAGTTCAGA 150
CACGTTCCGA AACTGCAGTA AAAGGAGTTA AGTCCTGACT TGTCTCCAGC 200
TGGGGCTATT TAAACCATGC ATTTTCCCAG CTGTGTTCAG TGGCGATTGG 250
AGGGTAGACC TGTGGGCACG GACGCACGCC ACTTTTTCTC TGCTGATCCA 300
GGTAAGCACC GACTTGCTTG TAGCTTTAGT TTTAACTGTT GTTTATGTTC 350
TTTATATATG ATGTATTTTC CACAGATGTT TCATGATTTC CAGTTTTCAT 400
CGTGTCTTTT TTTTCCTTGT AGGCAAATGT GCAATACCAA CATGTCTGTA 450
CCTACTGATG GGGCTGTAAC CACCCCACAG ATTCCAGCTT CGGAACAAGA 500






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



3
CAGCCAAGCT CGCGCGGTGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



4
TCTTTCCGAC ACACAGGGCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



5
CAGCAGGATC TCGGTCAGAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



6
GGGCGCTCGT ACGCACTAAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



7
TCGGGGATCA TTCCACTCTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



8
CGGGGTTTTC GCGCTTGGAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



9
CATTTGCCTG CTCCTCACCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



10
GTATTGCACA TTTGCCTGCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



11
AGCACCATCA GTAGGTACAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



12
CTACCAAGTT CCTGTAGATC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



13
TCAACTTCAA ATTCTACACT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



14
TTTACAATCA GGAACATCAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



15
AGCTTCTTTG CACATGTAAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



16
CAGGTCAACT AGGGGAAATA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



17
TCTTATAGAC AGGTCAACTA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



18
TCCTAGGGTT ATATAGTTAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



19
AAGTATTCAC TATTCCACTA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



20
CCAAGATCAC CCACTGCACT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



21
AGGTGTGGTG GCAGATGACT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



22
CCTGTCTCTA CTAAAAGTAC 20






20 base pairs


Nucleic Acid


Single


Linear



No



unknown



23
ACAAGCCTTC GCTCTACCGG 20






20 base pairs


Nucleic Acid


Single


Linear



No



unknown



24
TTCAGCGCAT TTGTACATAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



25
TCTTTCCGAC ACACAGGGCC 20






20 base pairs


Nucleic Acid


Single


Linear



No



unknown



26
AGCTTCTTTA TACATGTAAA 20






20 base pairs


Nucleic Acid


Single


Linear



No



unknown



27
AGCTTCTTTA CACATGTAAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



28
CTACCCTCCA ATCGCCACTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



29
GGTCTACCCT CCAATCGCCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



30
CGTGCCCACA GGTCTACCCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



31
AAGTGGCGTG CGTCCGTGCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



32
AAAGTGGCGT GCGTCCGTGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



33
AAGCAGCCAA GCTCGCGCGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



34
CAGGCCCCAG AAGCAGCCAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



35
GCCACACAGG CCCCAGAAGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



36
ACACACAGGG CCACACAGGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



37
TTCCGACACA CAGGGCCACA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



38
GCTCCATCTT TCCGACACAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



39
GCTTCTTGCT CCATCTTTCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



40
CCCTCGGGCT CGGCTTCTTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



41
GCGGCCGCCC CTCGGGCTCG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



42
AAGCAGCAGG ATCTCGGTCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



43
GCTGCGAAAG CAGCAGGATC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



44
TGCTCCTGGC TGCGAAAGCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



45
GGGACGGTGC TCCTGGCTGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



46
ACTGGGCGCT CGTACGCACT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



47
GCCAGGGCAC TGGGCGCTCG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



48
TCTCCGGGCC AGGGCACTGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



49
TCATTCCACT CTCCGGGCCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



50
GGAAGCACGA CGCCCTGGGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



51
TACTGCGGAA GCACGACGCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



52
GGGACTGACT ACTGCGGAAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



53
TCAAGACTCC CCAGTTTCCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



54
CCTGCTCCTC ACCATCCGGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



55
TTTGCCTGCT CCTCACCATC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



56
ATTTGCCTGC TCCTCACCAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



57
ACATTTGCCT GCTCCTCACC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



58
CACATTTGCC TGCTCCTCAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



59
GCACATTTGC CTGCTCCTCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



60
TGCACATTTG CCTGCTCCTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



61
TTGCACATTT GCCTGCTCCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



62
ATTGCACATT TGCCTGCTCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



63
TATTGCACAT TTGCCTGCTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



64
GGTATTGCAC ATTTGCCTGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



65
TGGTATTGCA CATTTGCCTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



66
TTGGTATTGC ACATTTGCCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



67
GTTGGTATTG CACATTTGCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



68
TGTTGGTATT GCACATTTGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



69
ATGTTGGTAT TGCACATTTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



70
CATGTTGGTA TTGCACATTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



71
ACATGTTGGT ATTGCACATT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



72
GACATGTTGG TATTGCACAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



73
AGACATGTTG GTATTGCACA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



74
CAGACATGTT GGTATTGCAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



75
CAGTAGGTAC AGACATGTTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



76
TACAGCACCA TCAGTAGGTA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



77
GGAATCTGTG AGGTGGTTAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



78
TTCCGAAGCT GGAATCTGTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



79
AGGGTCTCTT GTTCCGAAGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



80
GCTTTGGTCT AACCAGGGTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



81
GCAATGGCTT TGGTCTAACC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



82
TAACTTCAAA AGCAATGGCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



83
GTGCACCAAC AGACTTTAAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



84
ACCTCTTTCA TAGTATAAGT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



85
ATAATATACT GGCCAAGATA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



86
TAATCGTTTA GTCATAATAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



87
ATCATATAAT CGTTTAGTCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



88
GCTTCTCATC ATATAATCGT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



89
CAATATGTTG TTGCTTCTCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



90
GAACAATATA CAATATGTTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



91
TCATTTGAAC AATATACAAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



92
TAGAAGATCA TTTGAACAAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



93
AACAAATCTC CTAGAAGATC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



94
TGGCACGCCA AACAAATCTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



95
AGAAGCTTGG CACGCCAAAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



96
CTTTCACAGA GAAGCTTGGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



97
TTTTCCTGTG CTCTTTCACA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



98
TATATATTTT CCTGTGCTCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



99
ATCATGGTAT ATATTTTCCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



100
TTCCTGTAGA TCATGGTATA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



101
TACTACCAAG TTCCTGTAGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



102
TTCCTGCTGA TTGACTACTA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



103
TGAGTCCGAT GATTCCTGCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



104
CAGATGTACC TGAGTCCGAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



105
CTGTTCTCAC TCACAGATGT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



106
TTCAAGGTGA CACCTGTTCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



107
ACTCCCACCT TCAAGGTGAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



108
GGTCCTTTTG ATCACTCCCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



109
AAGCTCTTGT ACAAGGTCCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



110
CTCTTCCTGA AGCTCTTGTA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



111
AAGATGAAGG TTTCTCTTCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



112
AAACCAAATG TGAAGATGAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



113
ATGGTCTAGA AACCAAATGT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



114
CTAGATGAGG TAGATGGTCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



115
AATTGCTCTC CTTCTAGATG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



116
TCTGTCTCAC TAATTGCTCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



117
TCTGAATTTT CTTCTGTCTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



118
CACCAGATAA TTCATCTGAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



119
TTTGTCGTTC ACCAGATAAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



120
GTGGCGTTTT CTTTGTCGTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



121
TACTATCAGA TTTGTGGCGT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



122
GAAAGGGAAA TACTATCAGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



123
GCTTTCATCA AAGGAAAGGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



124
TACACACAGA GCCAGGCTTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



125
CTCCCTTATT ACACACAGAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



126
TCACAACATA TCTCCCTTAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



127
CTACTGCTTC TTTCACAACA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



128
GATTCACTGC TACTGCTTCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



129
TGGCGTCCCT GTAGATTCAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



130
AAGATCCGGA TTCGATGGCG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



131
CAGCATCAAG ATCCGGATTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



132
GTTCACTTAC ACCAGCATCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



133
CAATCACCTG AATGTTCACT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



134
CTGATCCAAC CAATCACCTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



135
GAAACTGAAT CCTGATCCAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



136
TGATCTGAAA CTGAATCCTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



137
CTACACTAAA CTGATCTGAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



138
CAACTTCAAA TTCTACACTA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



139
AGATTCAACT TCAAATTCTA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



140
GAGTCGAGAG ATTCAACTTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



141
TAATCTTCTG AGTCGAGAGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



142
CTAAGGCTAT AATCTTCTGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



143
TTCTTCACTA AGGCTATAAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



144
TCTTGTCCTT CTTCACTAAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



145
CTGAGAGTTC TTGTCCTTCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



146
TTCATCTGAG AGTTCTTGTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



147
CCTCATCATC TTCATCTGAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



148
CTTGATATAC CTCATCATCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



149
ATACACAGTA ACTTGATATA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



150
CTCTCCCCTG CCTGATACAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



151
GAATCTGTAT CACTCTCCCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



152
TCTTCAAATG AATCTGTATC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



153
AAATTTCAGG ATCTTCTTCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



154
AGTCAGCTAA GGAAATTTCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



155
GCATTTCCAA TAGTCAGCTA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



156
CATTGCATGA AGTGCATTTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



157
TCATTTCATT GCATGAAGTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



158
CATCTGTTGC AATGTGATGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



159
GAAGGGCCCA ACATCTGTTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



160
TTCTCACGAA GGGCCCAACA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



161
GAAGCCAATT CTCACGAAGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



162
TATCTTCAGG AAGCCAATTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



163
CTTTCCCTTT ATCTTCAGGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



164
TCCCCTTTAT CTTTCCCTTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



165
CTTTCTCAGA GATTTCCCCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



166
CAGTTTGGCT TTCTCAGAGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



167
GTGTTGAGTT TTCCAGTTTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



168
CCTCTTCAGC TTGTGTTGAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



169
ACATCAAAGC CCTCTTCAGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



170
GAATCATTCA CTATAGTTTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



171
ATGACTCTCT GGAATCATTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



172
CCTCAACACA TGACTCTCTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



173
TTATCATCAT TTTCCTCAAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



174
TAATTTTATC ATCATTTTCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



175
GAAGCTTGTG TAATTTTATC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



176
TGATTGTGAA GCTTGTGTAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



177
CACTTTCTTG TGATTGTGAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



178
GCTGAGAATA GTCTTCACTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



179
AGTTGATGGC TGAGAATAGT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



180
TGCTACTAGA AGTTGATGGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



181
TAAATAATGC TACTAGAAGT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



182
CTTGGCTGCT ATAAATAATG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



183
ATCTTCTTGG CTGCTATAAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



184
AACTCTTTCA CATCTTCTTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



185
CCCTTTCAAA CTCTTTCACA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



186
GGGTTTCTTC CCTTTCAAAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



187
TCTTTGTCTT GGGTTTCTTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



188
CTCTCTTCTT TGTCTTGGGT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



189
AACTAGATTC CACACTCTCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



190
CAAGGTTCAA TGGCATTAAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



191
TGACAAATCA CACAAGGTTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



192
TCGACCTTGA CAAATCACAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



193
ATGGACAATG CAACCATTTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



194
TGTTTTGCCA TGGACAATGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



195
TAAGATGTCC TGTTTTGCCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



196
GCAGGCCATA AGATGTCCTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



197
ACATGTAAAG CAGGCCATAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



198
CTTTGCACAT GTAAAGCAGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



199
TTTCTTTAGC TTCTTTGCAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



200
TTATTCCTTT TCTTTAGCTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



201
TGGGCAGGGC TTATTCCTTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



202
ACATACTGGG CAGGGCTTAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



203
TTGGTTGTCT ACATACTGGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



204
TCATTTGAAT TGGTTGTCTA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



205
AAGTTAGCAC AATCATTTGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



206
TCTCTTATAG ACAGGTCAAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



207
AAATATATAA TTCTCTTATA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



208
AGTTAGAAAT ATATAATTCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



209
ATATAGTTAG AAATATATAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



210
CTAGGGTTAT ATAGTTAGAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



211
TAAATTCCTA GGGTTATATA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



212
CAGGTTGTCT AAATTCCTAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



213
ATAAATTTCA GGTTGTCTAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



214
ATATATGTGA ATAAATTTCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



215
CTTTGATATA TGTGAATAAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



216
CATTTTCTCA CTTTGATATA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



217
ATTGAGGCAT TTTCTCACTT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



218
AATCTATGTG AATTGAGGCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



219
AGAAGAAATC TATGTGAATT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



220
ATACTAAAGA GAAGAAATCT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



221
GTCAATTATA CTAAAGAGAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



222
TAGGTCAATT ATACTAAAGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



223
CAAAGTAGGT CAATTATACT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



224
CCACTACCAA AGTAGGTCAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



225
AGTATTCACT ATTCCACTAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



226
TATAGTAAGT ATTCACTATT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



227
AGTCAAATTA TAGTAAGTAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



228
CATATTCAAG TCAAATTATA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



229
AAAGGATGAG CTACATATTC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



230
GTGTAAAGGA TGAGCTACAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



231
TAGGAGTTGG TGTAAAGGAT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



232
TTTAAAATTA GGAGTTGGTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



233
GAAATTATTT AAAATTAGGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



234
CAGAGTAGAA ATTATTTAAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



235
CTCATTTAAG ACAGAGTAGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



236
TACTTCTCAT TTAAGACAGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



237
CATATACATA TTTAAGAAAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



238
TTAAATGTCA TATACATATT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



239
TAATAAGTTA CATTTAAATG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



240
GTAACAGAGC AAGACTCGGT 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



241
CAGCCTGGGT AACAGAGCAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



242
CACTCCAGCC TGGGTAACAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



243
CCCACTGCAC TCCAGCCTGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



244
GCCAAGATCA CCCACTGCAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



245
GCAGTGAGCC AAGATCACCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



246
GAGCTTGCAG TGAGCCAAGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



247
GAGGGCAGAG CTTGCAGTGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



248
CAGGAGAATG GTGCGAACCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



249
AGGCTGAGGC AGGAGAATGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



250
ATTGGGAGGC TGAGGCAGGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



251
CAAGCTAATT GGGAGGCTGA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



252
AGGCCAAGCT AATTGGGAGG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



253
ATGACTGTAG GCCAAGCTAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



254
CAGATGACTG TAGGCCAAGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



255
GGTGGCAGAT GACTGTAGGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



256
AATTAGCCAG GTGTGGTGGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



257
GTCTCTACTA AAAGTACAAA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



258
CGGTGAAACC CTGTCTCTAC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



259
TGGCTAACAC GGTGAAACCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



260
AGACCATCCT GGCTAACACG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



261
GAGATCGAGA CCATCCTGGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



262
GAGGTCAGGA GATCGAGACC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



263
GCGGATCACG AGGTCAGGAG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



264
AGGCCGAGGT GGGCGGATCA 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



265
TTTGGGAGGC CGAGGTGGGC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



266
TCCCAGCACT TTGGGAGGCC 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



267
CCTGTAATCC CAGCACTTTG 20






20 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



268
GTGGCTCATG CCTGTAATCC 20






21 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



269
GGCAAATGTG CAATACCAAC A 21






26 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



270
TGCACCAACA GACTTTAATA ACTTCA 26






25 base pairs


Nucleic Acid


Single


Linear



Yes



unknown



271
CCACCTCACA GATTCCAGCT TCGGA 25







Claims
  • 1. An antisense compound 8 to 30 nucleobases in length targeted to nucleobases 1-308 of the 5′ untranslated region, 1776-1806 of the translation termination codon region or 1818-2370 of the 3′ untranslated region of a nucleic acid molecule encoding human mdm2, wherein said antisense compound modulates the expression of human mdm2.
  • 2. The antisense compound of claim 1 wherein said antisense compound inhibits the expression of human mdm2.
  • 3. The antisense compound of claim 2 comprising SEQ ID NO: 4.
  • 4. A method of reducing hyperproliferation of human cells comprising contacting proliferating human cells in vitro with the antisense compound of claim 2 or a composition comprising said antisense compound.
  • 5. The antisense compound of claim 1 which is an antisense oligonucleotide.
  • 6. The antisense compound of claim 1 which contains at least one phosphorothioate intersugar linkage.
  • 7. The antisense compound of claim 1 which has at least one 2′-O-methoxyethyl modification.
  • 8. The antisense compound of claim 1 which contains at least one 5-methyl cytidine.
  • 9. The antisense compound of claim 7 in which every 2′-O-methoxyethyl modified residue is a 5-methyl cytidine.
  • 10. A method of modulating the expression of human mdm2 in human cells or tissues comprising contacting said cells or tissues in vitro with the antisense compound of claim 1.
  • 11. An antisense compound up to 30 nucleobases in length comprising at least an 8-nucleobase portion of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 21, SEQ ID NO: 36, SEQ ID NO: 52, SEQ ID NO: 216, SEQ ID NO: 246, SEQ ID NO: 251, SEQ ID NO: 260, or SEQ ID NO: 264 which inhibits the expression of human mdm2.
  • 12. An antisense compound up to 30 nucleobases in length targeted to a 5′ untranslated region of a nucleic acid molecule encoding a S-mdm2 transcript, wherein said antisense compound inhibits the expression of said S-mdm2 transcript and comprises at least an 8 nucleobase portion of SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5 or SEQ ID NO:7.
  • 13. An antisense compound up to 30 nucleobases in length comprising at least an 8-nucleobase portion of SEQ ID NO: 15, SEQ ID NO: 56, SEQ ID NO: 57, SEQ ID NO: 120, SEQ ID NO: 126, SEQ ID NO: 160, SEQ ID NO: 177, SEQ ID NO: 180, or SEQ ID NO: 195.
  • 14. The antisense compound of claim 13 which contains at least one phosphorothioate intersugar linkage.
  • 15. The antisense compound of claim 13 which has at least one 2′-O-methoxyethyl modification.
  • 16. The antisense compound of claim 13 which contains at least one 5-methyl cytidine.
  • 17. The antisense compound of claim 15 in which every 2′-O-methoxyethyl modified residue is a 5-methyl cytidine.
  • 18. A method of modulating the expression of human mdm2 in cells or tissues comprising contacting said cells or tissues in vitro with the antisense compound of claim 13.
  • 19. A method of reducing hyperproliferation of human cells comprising contacting proliferating human cells in vitro with the antisense compound of claim 13.
  • 20. An antisense compound consisting of SEQ ID NO: 60, 61, 69 or 70.
Parent Case Info

This application is a continuation in-part of applicaton Ser. No. 09/048,810 filed Mar. 26, 1998.

US Referenced Citations (3)
Number Name Date Kind
5652355 Metelev et al. Jul 1997
5856462 Agrawal Jan 1999
6013786 Chen et al. Jan 2000
Foreign Referenced Citations (3)
Number Date Country
0 635 068 B1 Nov 1997 EP
WO 9320238 Oct 1993 WO
WO 9910486 Mar 1999 WO
Non-Patent Literature Citations (5)
Entry
Andrea D. Branch, A good antisense molecule is hard to find, TIBS, 47-48, Feb. 1998.
Trisha Gura, Antisense Has Growing Pains, Science, pp. 575-577, Oct. 1995.
Stanley Crooke, Antisense '97: A roundtable on the state of the industry, Nature Biotechnology, p. 522, Jun. 1997.
Stanley Crooke, Antisense Research and Applications, Chapter 1, Basic Principles of Antisense Therapeutics, Springer-Verlag Press, Berlin, Heidelberg, New York, p. 3, Jul. 1998.
Kondo et al. MDM2 protein confers the resistance of a human gliobalstoma cell line to cisplatin-induced apoptosis, Oncogene, vol. 10, pp. 2001-2006, Apr. 1995.
Continuation in Parts (1)
Number Date Country
Parent 09/048810 Mar 1998 US
Child 09/280805 US